Query 007724
Match_columns 591
No_of_seqs 219 out of 1371
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 14:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 5E-223 1E-227 1757.2 49.8 558 32-590 10-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 7E-212 1E-216 1705.8 52.3 541 47-591 12-561 (563)
3 PLN03129 NADP-dependent malic 100.0 2E-211 4E-216 1707.2 54.2 543 49-591 39-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 1E-209 3E-214 1686.4 52.3 539 46-586 13-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 1E-118 2E-123 943.7 34.4 427 85-591 1-432 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 2E-110 4E-115 941.3 34.6 370 132-580 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 1E-109 2E-114 939.3 34.7 369 132-580 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 3E-108 6E-113 924.1 35.1 358 132-567 30-405 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 1.7E-99 4E-104 771.0 29.5 277 307-585 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 2.2E-96 5E-101 740.1 20.8 252 307-560 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.7E-93 3.8E-98 718.4 25.7 251 307-559 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 4E-84 8.7E-89 621.9 10.0 182 116-297 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.9E-58 4.1E-63 457.6 22.3 223 307-559 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 3.2E-08 7E-13 84.4 11.7 86 309-446 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.6 0.006 1.3E-07 67.2 20.9 159 252-449 105-302 (425)
16 PRK09414 glutamate dehydrogena 97.2 0.014 3.1E-07 64.6 18.0 188 253-461 138-357 (445)
17 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0017 3.7E-08 70.8 9.8 121 308-449 158-280 (417)
18 TIGR00936 ahcY adenosylhomocys 97.1 0.048 1E-06 59.9 20.1 127 299-459 156-293 (406)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0076 1.6E-07 60.6 12.7 130 310-461 2-140 (217)
20 PLN02477 glutamate dehydrogena 97.0 0.02 4.3E-07 62.9 16.0 186 253-461 112-324 (410)
21 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.004 8.6E-08 65.2 10.0 136 287-449 139-276 (311)
22 cd00401 AdoHcyase S-adenosyl-L 97.0 0.013 2.8E-07 64.4 14.2 129 299-461 163-302 (413)
23 PRK00045 hemA glutamyl-tRNA re 96.8 0.0046 9.9E-08 67.5 9.3 120 309-449 161-283 (423)
24 PRK14031 glutamate dehydrogena 96.8 0.045 9.8E-07 60.7 16.6 181 253-449 134-347 (444)
25 PLN02494 adenosylhomocysteinas 96.7 0.018 3.8E-07 64.3 13.0 130 299-462 215-355 (477)
26 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.014 3E-07 56.6 10.2 90 316-449 29-119 (168)
27 PRK14982 acyl-ACP reductase; P 96.6 0.015 3.3E-07 62.4 11.2 113 310-450 134-250 (340)
28 TIGR02853 spore_dpaA dipicolin 96.5 0.019 4.1E-07 59.9 11.1 138 308-474 128-265 (287)
29 PRK14030 glutamate dehydrogena 96.5 0.14 3E-06 57.0 17.8 189 253-461 134-357 (445)
30 PF01488 Shikimate_DH: Shikima 96.5 0.0042 9.2E-08 57.3 5.0 102 327-450 8-113 (135)
31 PTZ00079 NADP-specific glutama 96.4 0.21 4.5E-06 55.7 18.8 180 253-450 143-358 (454)
32 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.052 1.1E-06 54.9 11.4 123 308-449 8-140 (227)
33 PTZ00075 Adenosylhomocysteinas 96.0 0.12 2.5E-06 58.0 13.9 122 299-448 215-343 (476)
34 PRK08306 dipicolinate synthase 96.0 0.066 1.4E-06 56.0 11.5 127 314-474 135-266 (296)
35 PLN00203 glutamyl-tRNA reducta 95.9 0.035 7.7E-07 62.6 9.8 201 309-562 243-455 (519)
36 cd05313 NAD_bind_2_Glu_DH NAD( 95.9 0.16 3.4E-06 52.7 13.5 133 309-461 16-167 (254)
37 COG0373 HemA Glutamyl-tRNA red 95.8 0.047 1E-06 60.1 9.9 214 287-564 139-362 (414)
38 PRK14192 bifunctional 5,10-met 95.7 0.067 1.5E-06 56.0 9.9 108 309-460 137-249 (283)
39 PLN00106 malate dehydrogenase 95.6 0.063 1.4E-06 57.2 9.7 118 316-449 4-138 (323)
40 PRK13940 glutamyl-tRNA reducta 95.6 0.043 9.4E-07 60.2 8.6 210 288-562 143-359 (414)
41 PRK08293 3-hydroxybutyryl-CoA 95.6 0.17 3.6E-06 52.2 12.5 191 332-578 4-221 (287)
42 PRK14175 bifunctional 5,10-met 95.5 0.085 1.8E-06 55.5 10.1 95 309-447 136-231 (286)
43 cd01065 NAD_bind_Shikimate_DH 95.5 0.051 1.1E-06 49.9 7.5 108 316-449 4-120 (155)
44 PRK12549 shikimate 5-dehydroge 95.5 0.044 9.6E-07 57.0 7.8 90 316-422 112-203 (284)
45 cd01075 NAD_bind_Leu_Phe_Val_D 95.4 0.1 2.2E-06 51.6 9.9 123 309-461 4-129 (200)
46 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.11 2.5E-06 50.1 9.1 54 310-375 7-61 (194)
47 PRK00676 hemA glutamyl-tRNA re 94.5 0.2 4.2E-06 54.0 9.7 122 287-450 136-265 (338)
48 TIGR00518 alaDH alanine dehydr 94.5 0.14 3.1E-06 55.3 8.6 95 329-447 165-268 (370)
49 PF03807 F420_oxidored: NADP o 94.3 0.066 1.4E-06 45.6 4.6 95 333-448 1-96 (96)
50 TIGR01809 Shik-DH-AROM shikima 94.3 0.1 2.3E-06 54.1 6.8 102 300-429 100-208 (282)
51 cd05197 GH4_glycoside_hydrolas 94.2 0.099 2.2E-06 57.6 6.8 105 332-449 1-146 (425)
52 PF00670 AdoHcyase_NAD: S-aden 94.0 0.43 9.2E-06 46.6 9.9 120 308-461 3-123 (162)
53 PRK10792 bifunctional 5,10-met 93.9 0.57 1.2E-05 49.5 11.4 92 311-446 139-231 (285)
54 PF00208 ELFV_dehydrog: Glutam 93.9 0.15 3.2E-06 52.3 6.9 130 306-449 6-151 (244)
55 PRK05086 malate dehydrogenase; 93.4 0.44 9.6E-06 50.4 9.7 105 332-449 1-121 (312)
56 PF00056 Ldh_1_N: lactate/mala 93.2 0.069 1.5E-06 50.0 2.9 104 333-449 2-121 (141)
57 PRK06130 3-hydroxybutyryl-CoA 93.2 2.9 6.4E-05 43.3 15.2 121 332-478 5-142 (311)
58 TIGR02356 adenyl_thiF thiazole 93.1 0.17 3.6E-06 50.1 5.6 38 327-375 17-54 (202)
59 cd05296 GH4_P_beta_glucosidase 92.9 0.19 4.2E-06 55.3 6.2 128 332-473 1-168 (419)
60 cd00650 LDH_MDH_like NAD-depen 92.8 0.22 4.7E-06 50.8 6.2 125 334-472 1-144 (263)
61 PRK14191 bifunctional 5,10-met 92.7 0.43 9.4E-06 50.3 8.3 83 311-431 137-220 (285)
62 PRK08605 D-lactate dehydrogena 92.7 1.8 4E-05 46.0 13.1 153 263-447 59-237 (332)
63 PRK06129 3-hydroxyacyl-CoA deh 92.7 0.37 8E-06 50.2 7.7 38 485-522 184-221 (308)
64 PRK08328 hypothetical protein; 92.6 0.068 1.5E-06 53.9 2.1 120 293-450 7-131 (231)
65 cd05291 HicDH_like L-2-hydroxy 92.4 0.47 1E-05 49.6 8.1 126 333-474 2-144 (306)
66 PRK12749 quinate/shikimate deh 92.3 0.3 6.5E-06 51.1 6.5 49 316-375 109-157 (288)
67 PRK09424 pntA NAD(P) transhydr 92.1 1.2 2.5E-05 50.6 11.2 182 238-456 82-296 (509)
68 PRK07531 bifunctional 3-hydrox 92.0 2.2 4.7E-05 47.9 13.3 164 332-540 5-185 (495)
69 PTZ00325 malate dehydrogenase; 92.0 0.83 1.8E-05 48.8 9.4 107 329-449 6-128 (321)
70 PLN02928 oxidoreductase family 91.9 1.4 3E-05 47.3 11.1 139 308-470 120-284 (347)
71 PRK12548 shikimate 5-dehydroge 91.8 0.47 1E-05 49.4 7.2 58 299-375 102-159 (289)
72 PRK00257 erythronate-4-phospha 91.8 1.3 2.8E-05 48.5 10.8 169 298-507 80-263 (381)
73 COG0578 GlpA Glycerol-3-phosph 91.6 1 2.3E-05 51.3 10.1 162 330-564 11-179 (532)
74 PRK14027 quinate/shikimate deh 91.6 0.39 8.6E-06 50.2 6.4 49 316-375 112-160 (283)
75 cd05212 NAD_bind_m-THF_DH_Cycl 91.5 1.6 3.4E-05 41.5 9.8 82 312-431 9-91 (140)
76 PTZ00082 L-lactate dehydrogena 91.5 0.73 1.6E-05 49.0 8.4 104 331-449 6-131 (321)
77 PTZ00117 malate dehydrogenase; 91.5 0.79 1.7E-05 48.5 8.6 126 330-473 4-148 (319)
78 PRK08223 hypothetical protein; 91.3 0.37 8E-06 50.9 5.8 58 290-376 4-61 (287)
79 cd00704 MDH Malate dehydrogena 91.1 0.92 2E-05 48.3 8.7 110 333-449 2-129 (323)
80 PRK00066 ldh L-lactate dehydro 91.0 0.5 1.1E-05 50.0 6.6 126 331-473 6-148 (315)
81 PRK05600 thiamine biosynthesis 90.9 0.46 1E-05 51.5 6.3 102 327-444 37-162 (370)
82 cd01079 NAD_bind_m-THF_DH NAD 90.9 1.6 3.5E-05 43.9 9.7 103 312-431 34-147 (197)
83 PRK12475 thiamine/molybdopteri 90.8 0.55 1.2E-05 50.3 6.7 39 327-376 20-58 (338)
84 cd05298 GH4_GlvA_pagL_like Gly 90.7 0.6 1.3E-05 51.8 7.0 130 332-476 1-171 (437)
85 PRK14619 NAD(P)H-dependent gly 90.6 2 4.2E-05 44.9 10.5 33 331-375 4-36 (308)
86 PRK08762 molybdopterin biosynt 90.5 0.45 9.7E-06 51.3 5.8 38 327-375 131-168 (376)
87 PRK00258 aroE shikimate 5-dehy 90.2 0.68 1.5E-05 47.8 6.6 87 316-422 107-196 (278)
88 PRK14189 bifunctional 5,10-met 90.2 1.2 2.5E-05 47.2 8.3 83 311-431 138-221 (285)
89 PF00899 ThiF: ThiF family; I 90.0 0.55 1.2E-05 42.9 5.1 36 330-376 1-36 (135)
90 PRK14194 bifunctional 5,10-met 89.9 1.9 4.1E-05 46.0 9.7 92 311-446 139-231 (301)
91 PRK04346 tryptophan synthase s 89.8 5.9 0.00013 43.7 13.7 95 225-352 23-128 (397)
92 PF02826 2-Hacid_dh_C: D-isome 89.8 1.2 2.6E-05 43.0 7.4 115 322-468 27-147 (178)
93 PRK15438 erythronate-4-phospha 89.6 3.1 6.8E-05 45.5 11.3 116 309-460 94-217 (378)
94 PRK06035 3-hydroxyacyl-CoA deh 89.6 5.6 0.00012 41.0 12.7 32 332-375 4-35 (291)
95 COG0169 AroE Shikimate 5-dehyd 89.6 0.77 1.7E-05 48.3 6.4 47 317-374 110-158 (283)
96 PRK15076 alpha-galactosidase; 89.5 0.86 1.9E-05 50.4 7.0 129 332-476 2-174 (431)
97 PRK07688 thiamine/molybdopteri 89.2 0.46 9.9E-06 50.9 4.6 39 327-376 20-58 (339)
98 PRK14178 bifunctional 5,10-met 89.2 1.2 2.5E-05 47.1 7.4 84 310-431 131-215 (279)
99 PRK09260 3-hydroxybutyryl-CoA 89.2 0.76 1.7E-05 47.3 6.1 32 332-375 2-33 (288)
100 PRK14176 bifunctional 5,10-met 89.1 1.7 3.7E-05 46.0 8.6 84 310-431 143-227 (287)
101 PRK06223 malate dehydrogenase; 89.0 0.98 2.1E-05 46.9 6.7 119 332-475 3-147 (307)
102 cd05297 GH4_alpha_glucosidase_ 89.0 0.91 2E-05 49.9 6.7 127 333-475 2-171 (423)
103 COG0111 SerA Phosphoglycerate 88.7 2.7 5.8E-05 45.0 9.8 110 300-434 90-224 (324)
104 TIGR01763 MalateDH_bact malate 88.6 1 2.2E-05 47.5 6.5 124 332-473 2-144 (305)
105 COG0334 GdhA Glutamate dehydro 88.5 17 0.00037 40.5 15.9 186 252-461 111-325 (411)
106 TIGR02354 thiF_fam2 thiamine b 88.3 0.55 1.2E-05 46.6 4.1 107 327-453 17-126 (200)
107 TIGR02992 ectoine_eutC ectoine 88.0 3.1 6.7E-05 44.1 9.8 115 317-458 117-237 (326)
108 PF01210 NAD_Gly3P_dh_N: NAD-d 87.6 0.57 1.2E-05 44.3 3.6 85 333-437 1-93 (157)
109 COG1486 CelF Alpha-galactosida 87.4 0.4 8.6E-06 53.4 2.7 130 330-474 2-172 (442)
110 PF02056 Glyco_hydro_4: Family 87.4 0.88 1.9E-05 45.1 4.9 109 333-455 1-151 (183)
111 cd01336 MDH_cytoplasmic_cytoso 87.3 3.9 8.4E-05 43.6 10.0 121 333-463 4-142 (325)
112 PRK08374 homoserine dehydrogen 87.2 3.1 6.7E-05 44.5 9.3 157 332-503 3-179 (336)
113 TIGR01915 npdG NADPH-dependent 87.1 2.5 5.3E-05 42.0 7.9 96 333-451 2-106 (219)
114 PF01113 DapB_N: Dihydrodipico 87.1 3 6.6E-05 38.1 7.9 95 333-444 2-97 (124)
115 TIGR00872 gnd_rel 6-phosphoglu 87.0 2 4.3E-05 44.7 7.6 99 333-457 2-102 (298)
116 PRK14190 bifunctional 5,10-met 86.7 2.6 5.7E-05 44.5 8.2 83 311-431 138-221 (284)
117 PRK08644 thiamine biosynthesis 86.6 0.75 1.6E-05 46.1 4.0 38 327-375 24-61 (212)
118 PRK14851 hypothetical protein; 86.6 2.4 5.2E-05 49.7 8.6 123 327-465 39-194 (679)
119 PRK14184 bifunctional 5,10-met 86.4 2.3 5E-05 45.0 7.6 87 311-431 137-224 (286)
120 PRK07878 molybdopterin biosynt 86.3 1.9 4.1E-05 47.0 7.2 38 327-375 38-75 (392)
121 cd01337 MDH_glyoxysomal_mitoch 86.2 4.2 9.1E-05 43.3 9.5 102 333-449 2-120 (310)
122 PRK12550 shikimate 5-dehydroge 86.2 1.7 3.6E-05 45.4 6.4 48 316-375 108-155 (272)
123 PRK07634 pyrroline-5-carboxyla 86.1 1.8 3.8E-05 43.1 6.3 118 330-472 3-121 (245)
124 PRK13243 glyoxylate reductase; 86.0 6.2 0.00014 42.1 10.7 171 298-501 89-291 (333)
125 PRK14183 bifunctional 5,10-met 85.9 3.2 6.9E-05 43.9 8.3 84 310-431 136-220 (281)
126 PRK05597 molybdopterin biosynt 85.8 2.2 4.8E-05 45.9 7.3 38 327-375 24-61 (355)
127 cd00757 ThiF_MoeB_HesA_family 85.4 1 2.2E-05 45.2 4.3 104 327-449 17-123 (228)
128 PRK11880 pyrroline-5-carboxyla 85.4 3 6.4E-05 42.2 7.6 120 332-479 3-122 (267)
129 PRK14179 bifunctional 5,10-met 85.2 4.9 0.00011 42.5 9.3 83 311-431 138-221 (284)
130 PRK07411 hypothetical protein; 85.1 2.3 4.9E-05 46.5 7.1 38 327-375 34-71 (390)
131 PLN02306 hydroxypyruvate reduc 85.0 7.3 0.00016 42.7 10.9 174 297-501 107-323 (386)
132 cd01338 MDH_choloroplast_like 84.6 5.2 0.00011 42.7 9.3 110 332-449 3-131 (322)
133 TIGR02355 moeB molybdopterin s 84.6 1.1 2.4E-05 45.7 4.2 103 327-449 20-126 (240)
134 PRK07679 pyrroline-5-carboxyla 84.6 23 0.0005 36.4 13.8 108 331-463 3-111 (279)
135 PRK14172 bifunctional 5,10-met 84.3 6.2 0.00014 41.7 9.6 83 311-431 138-221 (278)
136 PRK14177 bifunctional 5,10-met 84.3 4.4 9.6E-05 42.9 8.5 82 312-431 140-222 (284)
137 PRK06436 glycerate dehydrogena 84.3 11 0.00023 40.1 11.4 92 326-449 117-212 (303)
138 PRK00094 gpsA NAD(P)H-dependen 84.2 1.8 3.9E-05 44.6 5.6 95 333-450 3-109 (325)
139 TIGR01772 MDH_euk_gproteo mala 84.2 6 0.00013 42.2 9.5 102 333-449 1-119 (312)
140 PRK09599 6-phosphogluconate de 83.8 5.4 0.00012 41.5 8.9 93 333-449 2-97 (301)
141 PRK14174 bifunctional 5,10-met 83.4 3.9 8.5E-05 43.5 7.7 86 312-431 140-226 (295)
142 cd01485 E1-1_like Ubiquitin ac 83.3 1.1 2.4E-05 44.3 3.5 39 327-376 15-53 (198)
143 PF01262 AlaDh_PNT_C: Alanine 83.3 0.4 8.6E-06 45.8 0.3 89 329-434 18-130 (168)
144 PRK14188 bifunctional 5,10-met 83.3 3.8 8.3E-05 43.5 7.6 81 311-429 138-219 (296)
145 cd01339 LDH-like_MDH L-lactate 82.7 2.6 5.6E-05 43.9 6.1 118 334-473 1-141 (300)
146 PRK07574 formate dehydrogenase 82.6 14 0.0003 40.7 11.8 116 326-472 187-308 (385)
147 PRK14618 NAD(P)H-dependent gly 82.5 1.8 3.9E-05 45.4 4.8 32 332-375 5-36 (328)
148 cd05294 LDH-like_MDH_nadp A la 82.5 6.3 0.00014 41.6 8.9 99 333-449 2-124 (309)
149 TIGR00561 pntA NAD(P) transhyd 82.5 7.7 0.00017 44.3 10.0 167 237-435 80-276 (511)
150 TIGR01285 nifN nitrogenase mol 82.5 2.3 4.9E-05 47.0 5.8 83 319-420 299-382 (432)
151 PRK05690 molybdopterin biosynt 82.5 1.7 3.7E-05 44.4 4.6 38 327-375 28-65 (245)
152 PF02882 THF_DHG_CYH_C: Tetrah 82.5 6.5 0.00014 38.2 8.2 83 311-431 16-99 (160)
153 PRK14187 bifunctional 5,10-met 82.2 8.4 0.00018 41.0 9.6 83 311-431 140-223 (294)
154 TIGR01759 MalateDH-SF1 malate 81.9 7.2 0.00016 41.7 9.1 122 332-463 4-143 (323)
155 PLN02516 methylenetetrahydrofo 81.9 6.1 0.00013 42.2 8.5 84 310-431 146-230 (299)
156 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.7 17 0.00036 41.3 12.3 36 486-521 186-221 (503)
157 PRK05808 3-hydroxybutyryl-CoA 81.7 26 0.00056 36.0 12.8 32 332-375 4-35 (282)
158 cd01487 E1_ThiF_like E1_ThiF_l 81.7 1.9 4.1E-05 41.8 4.3 32 333-375 1-32 (174)
159 PRK08291 ectoine utilization p 81.6 9 0.0002 40.7 9.7 116 317-458 120-240 (330)
160 PRK07066 3-hydroxybutyryl-CoA 81.6 3.3 7.2E-05 44.3 6.4 108 405-519 104-219 (321)
161 PRK14193 bifunctional 5,10-met 81.6 6 0.00013 41.9 8.2 85 311-431 138-223 (284)
162 PTZ00345 glycerol-3-phosphate 81.6 5 0.00011 43.7 7.9 23 330-352 10-32 (365)
163 PRK12921 2-dehydropantoate 2-r 81.4 3.4 7.4E-05 42.2 6.3 99 333-450 2-106 (305)
164 PRK14171 bifunctional 5,10-met 81.3 6.6 0.00014 41.7 8.4 85 309-431 137-222 (288)
165 cd01492 Aos1_SUMO Ubiquitin ac 81.3 1.4 3E-05 43.6 3.2 76 327-419 17-96 (197)
166 PRK08410 2-hydroxyacid dehydro 81.3 14 0.00031 39.1 11.0 136 297-468 84-252 (311)
167 cd05290 LDH_3 A subgroup of L- 81.3 4.3 9.2E-05 43.1 7.1 102 333-449 1-122 (307)
168 cd01483 E1_enzyme_family Super 81.2 2.1 4.6E-05 39.3 4.3 33 333-376 1-33 (143)
169 PRK14168 bifunctional 5,10-met 80.9 7.3 0.00016 41.6 8.6 89 309-431 139-228 (297)
170 PRK14166 bifunctional 5,10-met 80.8 7.2 0.00016 41.3 8.5 85 309-431 135-220 (282)
171 TIGR00507 aroE shikimate 5-deh 80.7 3.9 8.4E-05 42.0 6.4 48 316-375 102-149 (270)
172 PRK01710 murD UDP-N-acetylmura 80.5 11 0.00023 41.7 10.1 116 329-485 12-130 (458)
173 PRK14170 bifunctional 5,10-met 80.3 7.6 0.00016 41.2 8.5 84 310-431 136-220 (284)
174 PRK15116 sulfur acceptor prote 80.3 5.3 0.00011 41.9 7.2 107 327-451 26-135 (268)
175 PRK10886 DnaA initiator-associ 80.3 7.1 0.00015 39.0 7.9 91 329-434 39-130 (196)
176 PRK06522 2-dehydropantoate 2-r 80.0 5.3 0.00012 40.7 7.1 100 333-449 2-103 (304)
177 TIGR01381 E1_like_apg7 E1-like 80.0 1.8 3.9E-05 50.5 4.0 40 327-377 334-373 (664)
178 cd00755 YgdL_like Family of ac 79.9 2.1 4.5E-05 43.7 4.1 37 328-375 8-44 (231)
179 PRK05442 malate dehydrogenase; 79.8 12 0.00025 40.2 9.8 110 333-449 6-133 (326)
180 PRK12480 D-lactate dehydrogena 79.7 18 0.0004 38.7 11.2 120 297-447 90-235 (330)
181 PRK09310 aroDE bifunctional 3- 79.6 3.8 8.2E-05 46.0 6.3 47 316-374 317-363 (477)
182 PRK15469 ghrA bifunctional gly 79.5 7.7 0.00017 41.2 8.3 158 309-500 98-277 (312)
183 PRK06476 pyrroline-5-carboxyla 79.3 22 0.00048 36.0 11.2 95 333-449 2-96 (258)
184 TIGR01758 MDH_euk_cyt malate d 79.1 11 0.00023 40.4 9.3 135 333-477 1-155 (324)
185 cd05293 LDH_1 A subgroup of L- 79.0 6.1 0.00013 42.0 7.4 124 332-473 4-146 (312)
186 PRK14185 bifunctional 5,10-met 78.5 13 0.00028 39.6 9.6 87 311-431 137-224 (293)
187 PRK15317 alkyl hydroperoxide r 78.4 3.1 6.7E-05 46.6 5.2 85 279-375 148-243 (517)
188 TIGR01408 Ube1 ubiquitin-activ 78.0 1.1 2.3E-05 54.8 1.5 43 327-375 415-457 (1008)
189 TIGR03140 AhpF alkyl hydropero 77.5 3.5 7.7E-05 46.2 5.3 84 266-352 139-233 (515)
190 PF07992 Pyr_redox_2: Pyridine 77.3 3.9 8.4E-05 38.5 4.8 31 333-375 1-31 (201)
191 PRK02472 murD UDP-N-acetylmura 77.3 7.9 0.00017 42.0 7.8 35 329-375 3-37 (447)
192 COG0686 Ald Alanine dehydrogen 77.2 4 8.6E-05 44.2 5.3 109 329-458 166-290 (371)
193 PRK07680 late competence prote 77.1 5.2 0.00011 40.9 6.0 98 333-450 2-100 (273)
194 PRK06141 ornithine cyclodeamin 77.1 18 0.00039 38.2 10.2 105 329-458 123-232 (314)
195 KOG0029 Amine oxidase [Seconda 76.9 1.2 2.6E-05 50.4 1.4 25 329-353 13-37 (501)
196 PRK08268 3-hydroxy-acyl-CoA de 76.9 8.4 0.00018 43.6 8.1 102 410-520 112-222 (507)
197 PRK12490 6-phosphogluconate de 76.3 13 0.00028 38.7 8.8 93 333-449 2-97 (299)
198 PRK00141 murD UDP-N-acetylmura 76.3 12 0.00025 41.7 8.9 36 328-375 12-47 (473)
199 TIGR03366 HpnZ_proposed putati 76.3 23 0.00049 35.9 10.4 47 316-374 107-153 (280)
200 TIGR01327 PGDH D-3-phosphoglyc 76.2 21 0.00045 40.6 11.0 195 298-529 84-303 (525)
201 KOG0685 Flavin-containing amin 76.0 1.3 2.8E-05 49.8 1.4 26 327-352 17-42 (498)
202 PRK14169 bifunctional 5,10-met 75.5 19 0.0004 38.3 9.6 84 310-431 135-219 (282)
203 PLN02527 aspartate carbamoyltr 75.4 94 0.002 33.2 15.0 132 269-422 92-229 (306)
204 PRK14180 bifunctional 5,10-met 75.0 13 0.00028 39.4 8.4 85 309-431 136-221 (282)
205 PRK09880 L-idonate 5-dehydroge 75.0 31 0.00067 36.0 11.2 44 319-374 159-202 (343)
206 PRK14182 bifunctional 5,10-met 74.7 20 0.00044 38.0 9.7 83 311-431 137-220 (282)
207 PLN03139 formate dehydrogenase 74.6 26 0.00056 38.7 10.8 142 326-500 194-342 (386)
208 PRK14173 bifunctional 5,10-met 74.5 14 0.0003 39.3 8.4 83 311-431 135-218 (287)
209 PRK11790 D-3-phosphoglycerate 74.3 66 0.0014 35.6 13.9 199 290-529 89-318 (409)
210 PRK15409 bifunctional glyoxyla 74.0 20 0.00043 38.3 9.6 169 298-501 88-288 (323)
211 PRK13938 phosphoheptose isomer 73.9 12 0.00026 37.4 7.4 105 330-449 44-151 (196)
212 PLN02616 tetrahydrofolate dehy 73.9 13 0.00029 40.7 8.3 83 311-431 211-294 (364)
213 PRK13581 D-3-phosphoglycerate 73.8 46 0.00099 37.9 12.9 195 298-530 86-305 (526)
214 PF00070 Pyr_redox: Pyridine n 73.6 7.2 0.00016 32.4 5.0 35 333-379 1-35 (80)
215 KOG0069 Glyoxylate/hydroxypyru 73.5 19 0.00041 39.2 9.3 110 309-447 120-254 (336)
216 PRK14167 bifunctional 5,10-met 73.2 22 0.00047 38.1 9.5 87 311-431 137-224 (297)
217 PRK06487 glycerate dehydrogena 73.1 69 0.0015 34.1 13.3 186 298-527 88-308 (317)
218 COG0345 ProC Pyrroline-5-carbo 73.0 18 0.0004 38.0 8.8 105 332-463 2-107 (266)
219 PRK06270 homoserine dehydrogen 73.0 28 0.0006 37.3 10.4 106 332-444 3-124 (341)
220 PRK02842 light-independent pro 73.0 17 0.00037 40.1 9.1 88 317-419 276-368 (427)
221 cd05292 LDH_2 A subgroup of L- 72.6 11 0.00023 39.8 7.2 126 333-475 2-144 (308)
222 PRK14181 bifunctional 5,10-met 72.6 18 0.00039 38.5 8.7 88 310-431 132-220 (287)
223 cd01491 Ube1_repeat1 Ubiquitin 72.1 3.7 8E-05 43.4 3.5 38 327-375 15-52 (286)
224 PF02737 3HCDH_N: 3-hydroxyacy 72.1 5.6 0.00012 38.7 4.6 90 333-444 1-111 (180)
225 PRK07231 fabG 3-ketoacyl-(acyl 72.0 8.9 0.00019 37.2 6.0 36 328-375 2-38 (251)
226 PRK06153 hypothetical protein; 71.4 3.7 8E-05 45.3 3.4 101 327-449 172-278 (393)
227 KOG2337 Ubiquitin activating E 71.3 4.8 0.0001 46.0 4.3 165 329-506 338-522 (669)
228 TIGR02622 CDP_4_6_dhtase CDP-g 71.1 11 0.00024 39.4 6.8 102 329-446 2-127 (349)
229 cd01484 E1-2_like Ubiquitin ac 71.1 5.4 0.00012 40.9 4.4 32 333-375 1-32 (234)
230 PRK08229 2-dehydropantoate 2-r 70.9 8 0.00017 40.4 5.7 103 332-451 3-112 (341)
231 PRK06932 glycerate dehydrogena 70.7 39 0.00084 35.9 10.8 138 327-501 143-289 (314)
232 cd01486 Apg7 Apg7 is an E1-lik 70.5 5.5 0.00012 42.7 4.4 32 333-375 1-32 (307)
233 cd08237 ribitol-5-phosphate_DH 70.4 70 0.0015 33.5 12.6 35 330-374 163-197 (341)
234 TIGR00873 gnd 6-phosphoglucona 70.4 11 0.00023 42.5 6.9 95 333-447 1-99 (467)
235 PRK06407 ornithine cyclodeamin 70.3 26 0.00057 37.0 9.4 104 330-458 116-225 (301)
236 COG0190 FolD 5,10-methylene-te 70.2 18 0.00039 38.5 8.0 119 275-431 90-219 (283)
237 PTZ00142 6-phosphogluconate de 70.0 12 0.00026 42.2 7.1 97 333-449 3-104 (470)
238 PRK07502 cyclohexadienyl dehyd 69.5 27 0.00058 36.4 9.2 35 331-375 6-40 (307)
239 PF13738 Pyr_redox_3: Pyridine 69.5 5.4 0.00012 37.8 3.8 30 335-375 1-30 (203)
240 PLN02602 lactate dehydrogenase 69.4 15 0.00032 39.9 7.5 123 332-473 38-180 (350)
241 PLN02520 bifunctional 3-dehydr 69.3 10 0.00022 43.1 6.5 38 326-375 374-411 (529)
242 PRK07340 ornithine cyclodeamin 69.1 36 0.00077 35.9 10.1 104 329-458 123-230 (304)
243 PRK14186 bifunctional 5,10-met 68.7 24 0.00051 37.8 8.6 83 311-431 138-221 (297)
244 cd01488 Uba3_RUB Ubiquitin act 68.6 6.2 0.00013 41.8 4.3 32 333-375 1-32 (291)
245 PRK12439 NAD(P)H-dependent gly 68.4 7.3 0.00016 41.5 4.9 22 331-352 7-28 (341)
246 PRK09754 phenylpropionate diox 68.3 7.1 0.00015 41.9 4.8 36 330-375 2-37 (396)
247 PF01494 FAD_binding_3: FAD bi 68.2 7 0.00015 39.5 4.5 34 332-377 2-35 (356)
248 PLN02897 tetrahydrofolate dehy 68.1 21 0.00046 39.0 8.2 83 311-431 194-277 (345)
249 COG0039 Mdh Malate/lactate deh 68.0 15 0.00032 39.6 6.9 108 332-462 1-126 (313)
250 COG0476 ThiF Dinucleotide-util 67.2 7.4 0.00016 39.5 4.4 56 293-375 8-63 (254)
251 PLN02819 lysine-ketoglutarate 66.6 28 0.0006 43.1 9.7 101 330-435 202-326 (1042)
252 KOG1495 Lactate dehydrogenase 66.5 21 0.00046 38.2 7.6 113 327-462 16-145 (332)
253 PRK14620 NAD(P)H-dependent gly 66.5 14 0.0003 38.6 6.5 31 333-375 2-32 (326)
254 TIGR01771 L-LDH-NAD L-lactate 66.4 13 0.00028 39.3 6.1 123 336-473 1-139 (299)
255 PF03447 NAD_binding_3: Homose 66.1 9.6 0.00021 33.9 4.5 88 338-443 1-88 (117)
256 TIGR02371 ala_DH_arch alanine 65.3 40 0.00087 35.9 9.6 104 330-458 127-235 (325)
257 TIGR01214 rmlD dTDP-4-dehydror 64.6 27 0.00059 34.9 7.8 60 333-422 1-61 (287)
258 cd01489 Uba2_SUMO Ubiquitin ac 64.3 9.2 0.0002 40.9 4.6 32 333-375 1-32 (312)
259 PRK08618 ornithine cyclodeamin 64.1 60 0.0013 34.5 10.6 105 330-461 126-236 (325)
260 PLN02688 pyrroline-5-carboxyla 63.4 46 0.001 33.6 9.3 94 333-449 2-98 (266)
261 PRK12570 N-acetylmuramic acid- 63.2 27 0.0006 36.9 7.9 37 411-449 127-165 (296)
262 PF03446 NAD_binding_2: NAD bi 63.1 11 0.00024 35.6 4.5 102 332-461 2-107 (163)
263 KOG2304 3-hydroxyacyl-CoA dehy 62.9 6.7 0.00014 41.0 3.1 32 332-375 12-43 (298)
264 PRK07877 hypothetical protein; 62.8 18 0.0004 42.9 7.1 101 327-446 103-229 (722)
265 PF01408 GFO_IDH_MocA: Oxidore 62.6 5.1 0.00011 35.1 2.0 90 333-443 2-91 (120)
266 PRK01713 ornithine carbamoyltr 62.6 51 0.0011 35.6 9.8 131 270-419 98-233 (334)
267 PRK12429 3-hydroxybutyrate deh 62.1 30 0.00065 33.7 7.5 35 329-375 2-37 (258)
268 TIGR01292 TRX_reduct thioredox 61.8 9.5 0.00021 38.1 4.0 31 333-375 2-32 (300)
269 COG1179 Dinucleotide-utilizing 61.1 7.6 0.00017 40.7 3.2 42 328-380 27-68 (263)
270 PRK00536 speE spermidine synth 60.9 13 0.00028 38.9 4.9 101 332-475 74-175 (262)
271 PRK06046 alanine dehydrogenase 60.9 70 0.0015 34.0 10.4 103 330-458 128-236 (326)
272 COG5322 Predicted dehydrogenas 60.7 13 0.00028 39.7 4.8 47 306-352 142-189 (351)
273 TIGR00465 ilvC ketol-acid redu 60.6 32 0.00069 36.8 7.8 24 329-352 1-24 (314)
274 cd00300 LDH_like L-lactate deh 60.3 25 0.00055 36.9 7.0 102 334-449 1-118 (300)
275 PRK06719 precorrin-2 dehydroge 60.3 13 0.00028 35.6 4.5 36 328-375 10-45 (157)
276 cd05007 SIS_Etherase N-acetylm 60.1 15 0.00033 37.9 5.2 38 410-449 117-156 (257)
277 PRK06718 precorrin-2 dehydroge 60.0 13 0.00028 37.0 4.5 35 328-374 7-41 (202)
278 PF05834 Lycopene_cycl: Lycope 60.0 11 0.00024 40.3 4.4 35 334-378 2-36 (374)
279 PRK11883 protoporphyrinogen ox 59.8 5.9 0.00013 42.4 2.2 22 332-353 1-22 (451)
280 PRK12409 D-amino acid dehydrog 59.4 12 0.00026 40.0 4.4 33 332-376 2-34 (410)
281 COG1250 FadB 3-hydroxyacyl-CoA 59.3 2.3E+02 0.0051 30.5 14.0 140 403-561 101-249 (307)
282 PRK05866 short chain dehydroge 59.3 31 0.00068 35.4 7.4 39 326-375 35-73 (293)
283 PRK06823 ornithine cyclodeamin 58.8 66 0.0014 34.4 9.8 105 330-459 127-236 (315)
284 PRK15181 Vi polysaccharide bio 58.6 43 0.00092 35.2 8.4 105 325-446 9-141 (348)
285 PRK06928 pyrroline-5-carboxyla 58.5 39 0.00084 35.0 7.9 98 332-449 2-101 (277)
286 TIGR01470 cysG_Nterm siroheme 58.5 14 0.0003 36.9 4.5 36 328-375 6-41 (205)
287 PLN00112 malate dehydrogenase 58.2 38 0.00083 38.1 8.2 111 332-449 101-229 (444)
288 TIGR02028 ChlP geranylgeranyl 58.0 12 0.00025 40.6 4.1 31 333-375 2-32 (398)
289 TIGR03169 Nterm_to_SelD pyridi 57.6 6.9 0.00015 41.1 2.3 36 333-377 1-36 (364)
290 cd05006 SIS_GmhA Phosphoheptos 57.6 59 0.0013 31.0 8.5 22 411-434 101-122 (177)
291 PF13454 NAD_binding_9: FAD-NA 57.2 11 0.00024 35.4 3.4 36 335-377 1-36 (156)
292 PRK11199 tyrA bifunctional cho 57.1 49 0.0011 36.0 8.7 33 331-375 98-131 (374)
293 TIGR01283 nifE nitrogenase mol 57.1 23 0.00049 39.4 6.3 84 319-418 314-402 (456)
294 PF06690 DUF1188: Protein of u 56.9 22 0.00047 37.2 5.6 145 325-524 38-187 (252)
295 TIGR02023 BchP-ChlP geranylger 56.8 13 0.00028 39.7 4.2 31 333-375 2-32 (388)
296 PRK06249 2-dehydropantoate 2-r 56.7 29 0.00064 36.2 6.7 103 329-450 3-110 (313)
297 PRK06184 hypothetical protein; 56.1 14 0.00031 41.0 4.5 35 330-376 2-36 (502)
298 KOG0743 AAA+-type ATPase [Post 55.9 18 0.00039 40.8 5.2 104 199-339 241-345 (457)
299 TIGR00441 gmhA phosphoheptose 55.4 73 0.0016 30.0 8.6 37 411-449 79-117 (154)
300 COG1052 LdhA Lactate dehydroge 55.1 86 0.0019 33.8 10.0 94 324-447 139-237 (324)
301 PRK07819 3-hydroxybutyryl-CoA 55.0 16 0.00034 38.1 4.4 31 332-374 6-36 (286)
302 PRK01438 murD UDP-N-acetylmura 54.9 18 0.00039 39.9 5.0 29 324-352 9-37 (480)
303 PRK07236 hypothetical protein; 54.8 17 0.00037 38.6 4.7 24 329-352 4-27 (386)
304 PRK05479 ketol-acid reductoiso 54.8 44 0.00096 36.2 7.8 25 328-352 14-38 (330)
305 PRK06847 hypothetical protein; 54.7 16 0.00035 38.2 4.4 22 331-352 4-25 (375)
306 PF01266 DAO: FAD dependent ox 54.6 19 0.00042 36.3 4.9 33 333-377 1-33 (358)
307 PRK07530 3-hydroxybutyryl-CoA 54.5 17 0.00036 37.5 4.5 32 332-375 5-36 (292)
308 COG0240 GpsA Glycerol-3-phosph 54.4 24 0.00053 38.3 5.7 87 332-434 2-92 (329)
309 PRK13512 coenzyme A disulfide 54.3 12 0.00027 40.8 3.6 33 333-375 3-35 (438)
310 PRK13937 phosphoheptose isomer 54.3 47 0.001 32.4 7.3 37 411-449 106-144 (188)
311 PRK11730 fadB multifunctional 54.3 29 0.00063 41.0 6.9 107 405-520 413-527 (715)
312 PRK12771 putative glutamate sy 54.1 24 0.00052 40.0 6.0 36 328-375 134-169 (564)
313 PRK14106 murD UDP-N-acetylmura 53.7 18 0.00039 39.3 4.8 25 328-352 2-26 (450)
314 TIGR01505 tartro_sem_red 2-hyd 53.4 41 0.00089 34.6 7.1 31 333-375 1-31 (291)
315 TIGR03376 glycerol3P_DH glycer 53.4 24 0.00052 38.2 5.5 20 333-352 1-20 (342)
316 COG2072 TrkA Predicted flavopr 53.4 17 0.00038 40.2 4.6 36 330-376 7-42 (443)
317 TIGR01181 dTDP_gluc_dehyt dTDP 53.1 64 0.0014 32.3 8.2 78 333-422 1-84 (317)
318 PLN02240 UDP-glucose 4-epimera 53.0 29 0.00063 35.9 6.0 107 328-446 2-132 (352)
319 PRK12828 short chain dehydroge 53.0 23 0.0005 33.9 4.9 36 328-375 4-40 (239)
320 PRK05749 3-deoxy-D-manno-octul 53.0 41 0.00089 36.1 7.3 37 402-443 312-349 (425)
321 TIGR00274 N-acetylmuramic acid 52.9 24 0.00051 37.4 5.3 38 411-450 126-165 (291)
322 TIGR01316 gltA glutamate synth 52.8 19 0.00042 39.6 4.9 36 328-375 130-165 (449)
323 PRK09564 coenzyme A disulfide 52.7 20 0.00044 38.8 4.9 37 332-378 1-37 (444)
324 PRK06138 short chain dehydroge 52.5 49 0.0011 32.1 7.2 37 328-375 2-38 (252)
325 PRK07233 hypothetical protein; 52.5 15 0.00033 38.9 3.8 31 333-375 1-31 (434)
326 cd01968 Nitrogenase_NifE_I Nit 52.3 19 0.00042 39.2 4.7 86 319-420 275-365 (410)
327 PRK08163 salicylate hydroxylas 52.3 18 0.00038 38.3 4.3 22 331-352 4-25 (396)
328 PRK09987 dTDP-4-dehydrorhamnos 52.3 53 0.0012 33.8 7.7 86 333-446 2-104 (299)
329 cd01493 APPBP1_RUB Ubiquitin a 52.3 17 0.00036 40.6 4.2 38 327-375 16-53 (425)
330 COG0499 SAM1 S-adenosylhomocys 52.2 68 0.0015 35.7 8.6 126 304-463 185-315 (420)
331 PRK09126 hypothetical protein; 51.9 17 0.00038 38.3 4.2 22 331-352 3-24 (392)
332 PTZ00245 ubiquitin activating 51.8 15 0.00032 39.0 3.5 72 327-416 22-97 (287)
333 PRK12829 short chain dehydroge 51.8 50 0.0011 32.3 7.1 37 328-375 8-44 (264)
334 PLN02268 probable polyamine ox 51.7 7.6 0.00016 41.9 1.5 20 333-352 2-21 (435)
335 PRK00414 gmhA phosphoheptose i 51.7 63 0.0014 31.8 7.8 105 329-448 42-148 (192)
336 PRK05441 murQ N-acetylmuramic 51.6 28 0.00062 36.8 5.7 39 410-450 130-170 (299)
337 COG0644 FixC Dehydrogenases (f 51.4 19 0.00042 38.8 4.5 36 331-378 3-38 (396)
338 cd00529 RuvC_resolvase Hollida 51.3 1E+02 0.0023 29.2 9.0 112 192-344 1-118 (154)
339 PF03435 Saccharop_dh: Sacchar 51.3 7.2 0.00016 41.7 1.2 88 334-443 1-96 (386)
340 PRK06392 homoserine dehydrogen 50.9 64 0.0014 34.8 8.2 83 333-420 2-90 (326)
341 PRK04965 NADH:flavorubredoxin 50.8 15 0.00032 39.1 3.5 35 332-376 3-37 (377)
342 PRK12779 putative bifunctional 50.6 20 0.00044 43.7 4.9 40 329-380 304-347 (944)
343 TIGR03026 NDP-sugDHase nucleot 50.5 50 0.0011 36.0 7.5 31 333-375 2-32 (411)
344 PRK00683 murD UDP-N-acetylmura 50.3 76 0.0016 34.6 8.8 113 331-485 3-115 (418)
345 PRK07364 2-octaprenyl-6-methox 50.2 18 0.00038 38.6 3.9 22 331-352 18-39 (415)
346 PRK12769 putative oxidoreducta 50.2 20 0.00044 41.5 4.6 35 329-375 325-359 (654)
347 PRK09186 flagellin modificatio 50.1 39 0.00085 33.0 6.1 36 329-375 2-37 (256)
348 PRK06475 salicylate hydroxylas 50.1 18 0.00039 38.7 4.0 21 332-352 3-23 (400)
349 PRK12810 gltD glutamate syntha 50.1 22 0.00047 39.5 4.7 34 330-375 142-175 (471)
350 PRK11154 fadJ multifunctional 49.9 1.8E+02 0.0039 34.5 12.4 104 408-520 413-524 (708)
351 TIGR01790 carotene-cycl lycope 49.8 19 0.00041 38.0 4.1 31 334-376 2-32 (388)
352 PRK03369 murD UDP-N-acetylmura 49.8 89 0.0019 35.1 9.5 89 329-442 10-98 (488)
353 TIGR03693 ocin_ThiF_like putat 49.8 71 0.0015 37.6 8.8 64 291-377 101-164 (637)
354 PLN02172 flavin-containing mon 49.5 22 0.00048 39.7 4.7 25 328-352 7-31 (461)
355 PF13580 SIS_2: SIS domain; PD 49.5 12 0.00026 34.6 2.3 30 403-434 95-124 (138)
356 PRK04176 ribulose-1,5-biphosph 49.4 20 0.00044 36.8 4.1 35 330-376 24-58 (257)
357 PRK07334 threonine dehydratase 49.4 2.3E+02 0.0051 31.0 12.4 196 90-376 8-208 (403)
358 TIGR02440 FadJ fatty oxidation 49.1 1.9E+02 0.0041 34.3 12.4 155 404-580 404-567 (699)
359 PRK13394 3-hydroxybutyrate deh 49.0 46 0.00099 32.6 6.3 36 328-375 4-40 (262)
360 PLN02695 GDP-D-mannose-3',5'-e 48.9 56 0.0012 35.0 7.5 97 330-446 20-137 (370)
361 PRK05993 short chain dehydroge 48.8 37 0.00081 34.2 5.8 33 331-375 4-37 (277)
362 PF13450 NAD_binding_8: NAD(P) 48.8 26 0.00057 28.8 3.9 30 336-377 1-30 (68)
363 COG1087 GalE UDP-glucose 4-epi 48.7 34 0.00073 37.1 5.6 99 333-446 2-118 (329)
364 PRK00048 dihydrodipicolinate r 48.6 1E+02 0.0022 31.7 9.0 93 332-452 2-95 (257)
365 TIGR00031 UDP-GALP_mutase UDP- 48.3 23 0.00049 38.9 4.4 31 333-375 3-33 (377)
366 PRK12266 glpD glycerol-3-phosp 48.1 21 0.00046 40.1 4.3 33 332-376 7-39 (508)
367 PRK12491 pyrroline-5-carboxyla 48.0 39 0.00085 35.1 5.9 35 332-374 3-37 (272)
368 PRK10892 D-arabinose 5-phospha 47.9 97 0.0021 32.4 8.9 83 332-449 48-132 (326)
369 PRK07251 pyridine nucleotide-d 47.8 23 0.0005 38.5 4.4 34 331-376 3-36 (438)
370 KOG2018 Predicted dinucleotide 47.5 22 0.00049 38.7 4.1 40 327-377 70-109 (430)
371 TIGR02032 GG-red-SF geranylger 47.5 23 0.00051 35.0 4.1 33 333-377 2-34 (295)
372 PRK07045 putative monooxygenas 47.4 24 0.00051 37.5 4.3 21 332-352 6-26 (388)
373 PRK06753 hypothetical protein; 47.2 23 0.0005 37.1 4.2 20 333-352 2-21 (373)
374 COG1086 Predicted nucleoside-d 47.1 33 0.00071 39.9 5.6 75 328-420 247-334 (588)
375 PLN00093 geranylgeranyl diphos 47.1 22 0.00048 39.5 4.2 21 332-352 40-60 (450)
376 PRK11259 solA N-methyltryptoph 47.1 24 0.00053 36.8 4.3 34 331-376 3-36 (376)
377 PTZ00318 NADH dehydrogenase-li 46.7 16 0.00035 39.8 3.0 36 328-375 7-42 (424)
378 PLN02545 3-hydroxybutyryl-CoA 46.7 27 0.00058 36.1 4.5 32 332-375 5-36 (295)
379 PRK11559 garR tartronate semia 46.7 76 0.0017 32.6 7.8 32 332-375 3-34 (296)
380 PRK06124 gluconate 5-dehydroge 46.6 56 0.0012 32.1 6.6 39 326-375 6-44 (256)
381 PRK07831 short chain dehydroge 46.5 52 0.0011 32.5 6.4 36 328-375 14-51 (262)
382 PRK06416 dihydrolipoamide dehy 46.1 24 0.00051 38.7 4.2 33 332-376 5-37 (462)
383 PRK07608 ubiquinone biosynthes 46.0 23 0.0005 37.3 4.0 32 332-375 6-37 (388)
384 TIGR01082 murC UDP-N-acetylmur 46.0 40 0.00086 37.0 5.9 105 333-473 1-107 (448)
385 PRK07523 gluconate 5-dehydroge 46.0 59 0.0013 32.0 6.6 36 328-375 7-43 (255)
386 PF02423 OCD_Mu_crystall: Orni 45.9 47 0.001 35.2 6.3 103 331-458 128-237 (313)
387 COG2423 Predicted ornithine cy 45.9 92 0.002 33.8 8.5 122 314-461 115-241 (330)
388 cd01490 Ube1_repeat2 Ubiquitin 45.8 24 0.00053 39.5 4.3 37 333-375 1-37 (435)
389 TIGR02082 metH 5-methyltetrahy 45.4 2.2E+02 0.0048 36.1 12.7 89 346-451 487-589 (1178)
390 TIGR01179 galE UDP-glucose-4-e 45.4 87 0.0019 31.4 7.9 97 333-444 1-119 (328)
391 PRK06171 sorbitol-6-phosphate 45.4 88 0.0019 31.0 7.8 76 328-421 6-87 (266)
392 PRK05732 2-octaprenyl-6-methox 45.3 29 0.00062 36.5 4.6 36 331-375 3-38 (395)
393 cd01979 Pchlide_reductase_N Pc 45.2 50 0.0011 36.0 6.5 34 319-352 264-297 (396)
394 PRK07424 bifunctional sterol d 45.2 36 0.00077 37.7 5.4 56 294-375 156-211 (406)
395 TIGR01373 soxB sarcosine oxida 45.2 32 0.0007 36.7 5.0 38 330-377 29-66 (407)
396 TIGR00670 asp_carb_tr aspartat 45.2 4.1E+02 0.009 28.4 15.8 136 262-421 85-226 (301)
397 cd04951 GT1_WbdM_like This fam 44.9 1.8E+02 0.004 29.2 10.1 37 402-443 255-291 (360)
398 COG0654 UbiH 2-polyprenyl-6-me 44.9 27 0.00058 37.4 4.3 33 331-375 2-34 (387)
399 PLN02463 lycopene beta cyclase 44.8 25 0.00054 39.2 4.2 32 332-375 29-60 (447)
400 PLN02676 polyamine oxidase 44.7 56 0.0012 36.7 6.9 23 330-352 25-47 (487)
401 PRK06182 short chain dehydroge 44.7 53 0.0012 32.8 6.2 75 330-422 2-85 (273)
402 cd00377 ICL_PEPM Members of th 44.6 3.7E+02 0.008 27.6 16.2 35 426-462 184-218 (243)
403 PRK11749 dihydropyrimidine deh 44.5 29 0.00063 38.2 4.6 35 329-375 138-172 (457)
404 TIGR01377 soxA_mon sarcosine o 44.5 28 0.0006 36.4 4.3 33 333-377 2-34 (380)
405 PRK10157 putative oxidoreducta 44.3 25 0.00055 38.4 4.1 21 332-352 6-26 (428)
406 PRK12770 putative glutamate sy 43.9 35 0.00076 36.1 5.0 35 329-375 16-50 (352)
407 PRK14852 hypothetical protein; 43.9 23 0.0005 43.5 3.9 38 327-375 328-365 (989)
408 TIGR01984 UbiH 2-polyprenyl-6- 43.9 24 0.00051 37.1 3.6 20 334-353 2-21 (382)
409 PRK08849 2-octaprenyl-3-methyl 43.9 29 0.00064 36.9 4.4 33 331-375 3-35 (384)
410 COG0673 MviM Predicted dehydro 43.7 59 0.0013 33.6 6.5 94 331-443 3-102 (342)
411 COG0771 MurD UDP-N-acetylmuram 43.7 1.4E+02 0.0031 33.8 9.8 118 328-486 4-124 (448)
412 PLN02172 flavin-containing mon 43.6 29 0.00063 38.8 4.5 36 329-376 202-237 (461)
413 PRK12778 putative bifunctional 43.5 34 0.00073 40.4 5.2 36 328-375 428-463 (752)
414 TIGR03736 PRTRC_ThiF PRTRC sys 43.5 35 0.00077 35.4 4.8 42 330-376 10-55 (244)
415 TIGR01789 lycopene_cycl lycope 43.5 35 0.00076 36.8 4.9 36 334-379 2-37 (370)
416 PF01946 Thi4: Thi4 family; PD 43.5 35 0.00076 35.4 4.6 37 330-378 16-52 (230)
417 PRK12831 putative oxidoreducta 43.4 30 0.00066 38.4 4.6 35 329-375 138-172 (464)
418 PRK11101 glpA sn-glycerol-3-ph 43.4 29 0.00062 39.5 4.4 33 331-375 6-38 (546)
419 PRK09853 putative selenate red 43.3 29 0.00062 42.9 4.6 35 329-375 537-571 (1019)
420 TIGR02053 MerA mercuric reduct 43.3 28 0.00061 38.1 4.3 30 334-375 3-32 (463)
421 PF13241 NAD_binding_7: Putati 43.2 20 0.00044 31.6 2.6 37 328-376 4-40 (103)
422 PF13738 Pyr_redox_3: Pyridine 43.1 29 0.00062 32.8 3.8 36 328-375 164-199 (203)
423 COG1063 Tdh Threonine dehydrog 42.9 45 0.00097 35.7 5.6 96 306-420 144-247 (350)
424 PRK14806 bifunctional cyclohex 42.9 62 0.0013 37.9 7.2 93 332-446 4-97 (735)
425 PRK04663 murD UDP-N-acetylmura 42.9 92 0.002 34.2 8.1 117 329-485 4-121 (438)
426 PRK07589 ornithine cyclodeamin 42.8 2.6E+02 0.0056 30.5 11.3 103 331-458 129-238 (346)
427 PRK13369 glycerol-3-phosphate 42.7 27 0.00058 39.1 4.1 33 332-376 7-39 (502)
428 PRK03515 ornithine carbamoyltr 42.6 1.8E+02 0.0038 31.7 10.0 131 270-419 97-233 (336)
429 PRK08773 2-octaprenyl-3-methyl 42.4 27 0.00059 37.0 3.9 34 331-376 6-39 (392)
430 PLN02350 phosphogluconate dehy 42.4 66 0.0014 36.7 7.1 97 333-449 8-110 (493)
431 PRK01747 mnmC bifunctional tRN 42.2 31 0.00068 40.0 4.6 33 332-376 261-293 (662)
432 PRK09466 metL bifunctional asp 42.2 73 0.0016 38.5 7.7 107 331-444 458-571 (810)
433 PRK08020 ubiF 2-octaprenyl-3-m 42.2 28 0.0006 36.8 3.9 33 331-375 5-37 (391)
434 PRK12826 3-ketoacyl-(acyl-carr 42.1 75 0.0016 30.7 6.6 36 328-375 3-39 (251)
435 PRK07478 short chain dehydroge 42.1 74 0.0016 31.3 6.6 37 328-375 3-39 (254)
436 PRK07890 short chain dehydroge 42.1 65 0.0014 31.5 6.2 36 329-375 3-38 (258)
437 PRK07588 hypothetical protein; 42.1 31 0.00067 36.6 4.2 20 333-352 2-21 (391)
438 PRK12814 putative NADPH-depend 42.0 33 0.00072 39.9 4.8 34 330-375 192-225 (652)
439 PRK08244 hypothetical protein; 42.0 30 0.00064 38.3 4.2 21 332-352 3-23 (493)
440 TIGR01988 Ubi-OHases Ubiquinon 41.9 28 0.00062 36.2 3.9 31 334-376 2-32 (385)
441 PF02558 ApbA: Ketopantoate re 41.8 38 0.00083 30.9 4.3 31 334-376 1-31 (151)
442 PRK12416 protoporphyrinogen ox 41.8 16 0.00036 39.8 2.2 47 332-378 2-55 (463)
443 COG0562 Glf UDP-galactopyranos 41.8 30 0.00066 37.9 4.0 34 333-378 3-36 (374)
444 COG1252 Ndh NADH dehydrogenase 41.8 26 0.00056 39.0 3.7 35 331-375 3-37 (405)
445 PRK08013 oxidoreductase; Provi 41.7 31 0.00068 37.0 4.2 33 331-375 3-35 (400)
446 PRK06185 hypothetical protein; 41.7 30 0.00066 36.8 4.1 34 331-376 6-39 (407)
447 PRK05714 2-octaprenyl-3-methyl 41.6 26 0.00055 37.4 3.5 32 332-375 3-34 (405)
448 TIGR01350 lipoamide_DH dihydro 41.5 32 0.00069 37.5 4.3 30 333-374 3-32 (461)
449 cd01974 Nitrogenase_MoFe_beta 41.5 26 0.00057 38.6 3.7 103 320-449 292-405 (435)
450 PRK08219 short chain dehydroge 41.3 1.1E+02 0.0023 29.2 7.4 22 401-422 60-82 (227)
451 TIGR03589 PseB UDP-N-acetylglu 41.2 65 0.0014 33.6 6.4 106 329-446 2-125 (324)
452 cd05017 SIS_PGI_PMI_1 The memb 41.0 1.3E+02 0.0028 26.9 7.4 34 411-447 43-78 (119)
453 PRK06841 short chain dehydroge 41.0 48 0.001 32.5 5.1 36 328-375 12-48 (255)
454 PRK08339 short chain dehydroge 40.9 94 0.002 31.2 7.3 37 327-375 4-41 (263)
455 PRK07067 sorbitol dehydrogenas 40.9 27 0.00058 34.4 3.3 37 328-375 3-39 (257)
456 PRK00711 D-amino acid dehydrog 40.8 34 0.00074 36.4 4.3 31 333-375 2-32 (416)
457 PRK08243 4-hydroxybenzoate 3-m 40.7 35 0.00076 36.4 4.4 22 331-352 2-23 (392)
458 TIGR00292 thiazole biosynthesi 40.6 33 0.00071 35.3 4.0 37 330-378 20-56 (254)
459 PRK06912 acoL dihydrolipoamide 40.6 34 0.00073 37.7 4.3 31 333-375 2-32 (458)
460 PRK14694 putative mercuric red 40.5 36 0.00078 37.5 4.6 34 330-375 5-38 (468)
461 PLN02653 GDP-mannose 4,6-dehyd 40.5 1.1E+02 0.0023 31.8 7.8 82 328-421 3-93 (340)
462 PRK05976 dihydrolipoamide dehy 40.4 35 0.00077 37.6 4.5 33 331-375 4-36 (472)
463 CHL00076 chlB photochlorophyll 40.2 42 0.0009 38.2 5.1 79 327-419 301-382 (513)
464 COG0565 LasT rRNA methylase [T 40.2 74 0.0016 33.3 6.4 74 330-423 3-84 (242)
465 KOG3851 Sulfide:quinone oxidor 40.1 21 0.00046 39.2 2.6 138 330-474 38-230 (446)
466 TIGR02931 anfK_nitrog Fe-only 40.1 46 0.001 37.3 5.4 25 328-352 309-333 (461)
467 cd01715 ETF_alpha The electron 40.1 2.6E+02 0.0056 26.6 9.8 82 331-442 30-111 (168)
468 PRK06292 dihydrolipoamide dehy 40.0 37 0.0008 37.1 4.5 33 331-375 3-35 (460)
469 PRK08294 phenol 2-monooxygenas 39.9 29 0.00064 40.3 3.9 43 330-383 31-74 (634)
470 PF00743 FMO-like: Flavin-bind 39.9 25 0.00055 40.1 3.3 26 327-352 179-204 (531)
471 cd01976 Nitrogenase_MoFe_alpha 39.9 62 0.0013 35.8 6.2 87 318-420 287-378 (421)
472 cd01833 XynB_like SGNH_hydrola 39.8 1.4E+02 0.003 27.2 7.6 68 199-282 18-85 (157)
473 PLN02342 ornithine carbamoyltr 39.8 3.9E+02 0.0086 29.3 12.2 126 269-419 136-267 (348)
474 PRK04690 murD UDP-N-acetylmura 39.7 37 0.0008 37.8 4.5 24 329-352 6-29 (468)
475 TIGR00658 orni_carb_tr ornithi 39.7 2.5E+02 0.0055 29.9 10.5 114 288-419 106-224 (304)
476 TIGR01317 GOGAT_sm_gam glutama 39.7 38 0.00082 37.9 4.6 34 330-375 142-175 (485)
477 TIGR01408 Ube1 ubiquitin-activ 39.6 25 0.00055 43.3 3.5 39 327-376 20-58 (1008)
478 KOG2012 Ubiquitin activating e 39.5 17 0.00037 43.8 1.9 116 327-469 426-552 (1013)
479 PRK06834 hypothetical protein; 39.5 37 0.00081 38.0 4.5 35 330-376 2-36 (488)
480 PRK08850 2-octaprenyl-6-methox 39.5 36 0.00078 36.4 4.3 33 331-375 4-36 (405)
481 PRK07538 hypothetical protein; 39.4 35 0.00075 36.7 4.1 20 333-352 2-21 (413)
482 PF12831 FAD_oxidored: FAD dep 39.4 37 0.00081 37.2 4.5 33 334-378 2-34 (428)
483 PRK10262 thioredoxin reductase 39.4 29 0.00064 35.9 3.5 24 329-352 4-27 (321)
484 KOG2013 SMT3/SUMO-activating c 39.3 29 0.00063 39.7 3.6 82 327-425 8-92 (603)
485 TIGR03364 HpnW_proposed FAD de 39.3 35 0.00076 35.7 4.1 31 333-375 2-32 (365)
486 COG4017 Uncharacterized protei 39.3 90 0.002 32.2 6.6 150 327-526 41-190 (254)
487 PF00743 FMO-like: Flavin-bind 39.1 36 0.00077 38.9 4.3 21 332-352 2-22 (531)
488 PRK08010 pyridine nucleotide-d 39.1 37 0.00079 37.0 4.3 32 332-375 4-35 (441)
489 PLN02568 polyamine oxidase 39.1 19 0.00041 41.1 2.2 24 330-353 4-27 (539)
490 PF04320 DUF469: Protein with 39.0 26 0.00055 32.1 2.5 32 253-284 27-61 (101)
491 PRK06200 2,3-dihydroxy-2,3-dih 38.9 31 0.00067 34.2 3.4 37 328-375 3-39 (263)
492 PF13407 Peripla_BP_4: Peripla 38.9 85 0.0019 30.6 6.5 144 153-327 52-206 (257)
493 PRK11728 hydroxyglutarate oxid 38.8 39 0.00085 36.1 4.4 34 332-375 3-36 (393)
494 TIGR03088 stp2 sugar transfera 38.6 2.1E+02 0.0046 29.6 9.7 36 403-443 266-301 (374)
495 PRK13301 putative L-aspartate 38.3 75 0.0016 33.7 6.2 117 332-472 3-122 (267)
496 PLN02657 3,8-divinyl protochlo 38.3 1.6E+02 0.0035 32.0 9.0 108 325-444 54-180 (390)
497 PRK07494 2-octaprenyl-6-methox 38.2 38 0.00083 35.8 4.2 34 331-376 7-40 (388)
498 PF12227 DUF3603: Protein of u 38.2 14 0.00031 37.6 0.9 25 184-211 51-75 (214)
499 TIGR03315 Se_ygfK putative sel 38.2 36 0.00078 42.1 4.4 34 330-375 536-569 (1012)
500 PRK08220 2,3-dihydroxybenzoate 38.2 1.5E+02 0.0033 28.8 8.1 37 328-376 5-42 (252)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=4.9e-223 Score=1757.17 Aligned_cols=558 Identities=65% Similarity=1.042 Sum_probs=545.4
Q ss_pred cCcccccccccccc-ccccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHH
Q 007724 32 GEDRATEDQLVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYV 110 (591)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~ 110 (591)
++...+..+...+| +.++++|+++|+||++|||+|||.+||++|||||||||+|+|+|+|++||+.+|+++++||+||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~ 89 (582)
T KOG1257|consen 10 STAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYI 89 (582)
T ss_pred cCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHH
Confidence 33333333334444 66788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC
Q 007724 111 AMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG 190 (591)
Q Consensus 111 ~L~~L~~~Ne~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG 190 (591)
||++||+|||+|||++|++|++|+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||
T Consensus 90 ~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDG 169 (582)
T KOG1257|consen 90 YLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDG 169 (582)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHH
Q 007724 191 ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVK 270 (591)
Q Consensus 191 ~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~ 270 (591)
||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+||.
T Consensus 170 erILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~ 249 (582)
T KOG1257|consen 170 ERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVV 249 (582)
T ss_pred CceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeeeeeecCCCccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHH
Q 007724 271 QNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELI 350 (591)
Q Consensus 271 ~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll 350 (591)
++|||++|||||||+++|||++|+|||++||||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||
T Consensus 250 ~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~ 329 (582)
T KOG1257|consen 250 QRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLI 329 (582)
T ss_pred HHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 007724 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 430 (591)
Q Consensus 351 ~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 430 (591)
+.+|+++ |+|+|||+++|||||++|||+++|+.+++++|++|||++++.++|+|||+.||||||||+|++||+||||||
T Consensus 330 v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl 408 (582)
T KOG1257|consen 330 VMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVL 408 (582)
T ss_pred HHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHH
Confidence 9999996 999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcc
Q 007724 431 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIR 510 (591)
Q Consensus 431 ~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~ 510 (591)
|+|+++|||||||||||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||+++|++++
T Consensus 409 ~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~ 488 (582)
T KOG1257|consen 409 RAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARR 488 (582)
T ss_pred HHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCC
Q 007724 511 VHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 590 (591)
Q Consensus 511 Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~d~~~~i~~~~~~P~Y~~~ 590 (591)
|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+.+|++++||+|+|+++
T Consensus 489 i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 489 IPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYRNS 568 (582)
T ss_pred CCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-212 Score=1705.75 Aligned_cols=541 Identities=49% Similarity=0.847 Sum_probs=530.9
Q ss_pred cccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHHH
Q 007724 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (591)
Q Consensus 47 ~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~l 126 (591)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccc
Q 007724 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (591)
Q Consensus 127 l~~~~~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (591)
|++|++||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCC
Q 007724 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (591)
Q Consensus 207 ~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~ 286 (591)
|+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++||+|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007724 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (591)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (591)
+|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 599999999
Q ss_pred CeEEEEcCCCcccCCCcCCCchhhhhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 007724 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (591)
Q Consensus 367 ~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (591)
++|||||++|||+++|.+ |+++|++|||+.++. .+|+|+|+.+|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999975 999999999975443 6899999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHH
Q 007724 438 EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 517 (591)
Q Consensus 438 erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~ 517 (591)
||||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007724 518 AASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 591 (591)
Q Consensus 518 aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~d~~~~i~~~~~~P~Y~~~~ 591 (591)
+||++||+++++++++++.|||++++||+||.+||.||+++|+++|+|+. +.|+|+.+||+++||+|+|+|++
T Consensus 489 aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 489 AAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 99999999999999999999999999999999999999999999999984 67889999999999999999974
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.7e-211 Score=1707.23 Aligned_cols=543 Identities=76% Similarity=1.191 Sum_probs=535.7
Q ss_pred cccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHHHhh
Q 007724 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (591)
Q Consensus 49 ~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~ 128 (591)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCccccch
Q 007724 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (591)
Q Consensus 129 ~~~~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 208 (591)
+|++||||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCcc
Q 007724 209 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 288 (591)
Q Consensus 209 GKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~ 288 (591)
||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007724 289 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (591)
Q Consensus 289 Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (591)
||++|+|||+++|||||||||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 007724 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (591)
Q Consensus 369 i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (591)
|||||++|||+++|.++|+++|++||++.++..+|+|+|+.+|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007724 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 528 (591)
Q Consensus 449 t~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~ 528 (591)
|++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007724 529 EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 591 (591)
Q Consensus 529 ~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~d~~~~i~~~~~~P~Y~~~~ 591 (591)
++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+|++++||+|+|++++
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987777899999999999999999975
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.4e-209 Score=1686.36 Aligned_cols=539 Identities=50% Similarity=0.841 Sum_probs=526.7
Q ss_pred ccccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHH
Q 007724 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (591)
Q Consensus 46 ~~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ 125 (591)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCccc
Q 007724 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 205 (591)
Q Consensus 126 ll~~~~~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 205 (591)
+|++|+|||||||||||||+||++||++||+|||||||++|||+|.++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCC
Q 007724 206 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 285 (591)
Q Consensus 206 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~ 285 (591)
||+||++|||+||||||++|||||||||||||+||+||+||||||+|++|++|++|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007724 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (591)
Q Consensus 286 ~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA 365 (591)
++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCeEEEEcCCCcccCCCcCCCchhhhhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCc
Q 007724 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 440 (591)
Q Consensus 366 ~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erP 440 (591)
++||||||++|||+++|.++|+++|++|||+. .+ ..+|+|||+.+|||||||+|+++|+|||||||+|+++||||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999973 33 56999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007724 441 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 520 (591)
Q Consensus 441 IIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA 520 (591)
|||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA 490 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCccCC
Q 007724 521 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 586 (591)
Q Consensus 521 ~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~--~~~-~~d~~~~i~~~~~~P~ 586 (591)
++||+++++++++.|.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 491 ~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 491 ASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.1e-118 Score=943.68 Aligned_cols=427 Identities=37% Similarity=0.536 Sum_probs=382.3
Q ss_pred ccCHHHHHHHHHHHHhcCCC-chhHHHHhhhhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 007724 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (591)
Q Consensus 85 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis 163 (591)
++|+| |.+|.+.++....+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.|++++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57899 99999999999887 99999999 899999999999999999999999999999999999888875
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCC-CCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccC
Q 007724 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242 (591)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~D 242 (591)
.++.+++.|||||||||||||||+| .+||+||+||++|||+||||| +|||+||+|||||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 4556667999999999999999999 679999999999999999999 9999999999886
Q ss_pred cccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHH
Q 007724 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAAL 322 (591)
Q Consensus 243 p~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~ 322 (591)
+++||++++++||. ..+|||||..-|+.+.+.|||.++|||||||||||+|+||||+||+
T Consensus 131 -------------------i~~~Vkal~p~Fgg-inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnal 190 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG-INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNAL 190 (432)
T ss_pred -------------------HHHHHHHhhhcCCC-cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHH
Confidence 89999999999954 5555555544444455667778999999999999999999999999
Q ss_pred HHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcC-CCchhhhhhcc-ccCCC
Q 007724 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHEPV 400 (591)
Q Consensus 323 r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~-~l~~~k~~fA~-~~~~~ 400 (591)
|++|++|+|+||||+|||+||+||++||+.+|++ +++||+|||+|+|+++|.+ .++++|..+|. +....
T Consensus 191 k~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~ 261 (432)
T COG0281 191 KLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER 261 (432)
T ss_pred HHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccc
Confidence 9999999999999999999999999999987543 2899999999999999975 36777777775 43344
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccee
Q 007724 401 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 480 (591)
Q Consensus 401 ~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~ 480 (591)
.+ .+++ .+||||||+|++ |+||+|+|++|++ +|||||||||| +|++||||.+|++|++|+|||||
T Consensus 262 ~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma~---~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrs------ 326 (432)
T COG0281 262 TL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMAK---HPIIFALANPT--PEITPEDAKEWGDGAAIVATGRS------ 326 (432)
T ss_pred cc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhcc---CCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCC------
Confidence 42 3444 569999999998 8999999999985 49999999999 99999999999999999999975
Q ss_pred CCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHH
Q 007724 481 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAY 560 (591)
Q Consensus 481 ~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~ 560 (591)
++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++.. .+.|+|+++++|.+|. ||.||+++|+
T Consensus 327 ----d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~ 400 (432)
T COG0281 327 ----DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAM 400 (432)
T ss_pred ----CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHH
Confidence 566699999999999999999999999999999999999999887655 7899999999999998 9999999999
Q ss_pred HcCCCCCCCCc-hhHHHHHHhCCccCCCCCCC
Q 007724 561 ELGVATRLPRP-QNLVKCAESCMYTPVYRNYR 591 (591)
Q Consensus 561 ~~G~a~~~~~~-~d~~~~i~~~~~~P~Y~~~~ 591 (591)
++|+|+..+.+ +++.++++..+|.|.|.+++
T Consensus 401 ~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T COG0281 401 EEGVARRPIDDEEAYEQALEARLWKPEYRMKR 432 (432)
T ss_pred HcCCccCCCCCHHHHHHHHHHHhcCcccccCC
Confidence 99999865544 46899999999999998763
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.8e-110 Score=941.29 Aligned_cols=370 Identities=32% Similarity=0.494 Sum_probs=337.2
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-cccchhh
Q 007724 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (591)
Q Consensus 132 ~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (591)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 345999999999999999 899999997 5556666799999999999999999997 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHH
Q 007724 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 290 (591)
Q Consensus 211 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af 290 (591)
++|||+||||| ++|+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 45666666 577 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007724 291 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (591)
Q Consensus 291 ~lL~ryr~--~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (591)
+||+|||+ ++|||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999975 499854 9
Q ss_pred EEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 007724 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (591)
Q Consensus 369 i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (591)
|||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007724 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 528 (591)
Q Consensus 449 t~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~ 528 (591)
| |||+||||++ |+|+|||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 8999999999999999999999999999999999999999999999
Q ss_pred ccccC------------CCccc--CCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007724 529 EENFE------------KGLIY--PPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 580 (591)
Q Consensus 529 ~~~~~------------~g~l~--P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~d~~~~i~~ 580 (591)
+++++ .|.+| |+..+ ++||.+||.||+++|+++|+|+. +. +|+.+|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 87533 45555 95555 68999999999999999999985 32 566666554
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-109 Score=939.32 Aligned_cols=369 Identities=29% Similarity=0.455 Sum_probs=338.9
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-cccchhh
Q 007724 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (591)
Q Consensus 132 ~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (591)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|||||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 345999999999999999 789999988 7778888999999999999999999996 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCC-eeeeeecCCCccH
Q 007724 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 289 (591)
Q Consensus 211 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~-~lIqfEDf~~~~A 289 (591)
++|||+||||| ++|| ||||+ || ||||++|+.+| |+ ..||||||+++||
T Consensus 101 ~~l~~~~~gi~---~~~i----~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDI----ELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---cccc----ccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 5555 55565 55 88999999999 88 7899999999999
Q ss_pred HHHHHHHcCC--CeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007724 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (591)
Q Consensus 290 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (591)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 89999999999999999999999999999999999999999999999999987 39874 8
Q ss_pred eEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 368 ~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
||||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 45799999998 999999999 8999999999998 9999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007724 448 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 527 (591)
Q Consensus 448 Pt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v 527 (591)
|| |||||||||+||+| |||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 89999999999999 999999 799999999999999999999999999999999999999999999
Q ss_pred Cccc--------------cCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007724 528 TEEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 580 (591)
Q Consensus 528 ~~~~--------------~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~d~~~~i~~ 580 (591)
++++ +....|||+..+ ++||..||.+|+++|+++|+|+. + .+|+.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9873 344559996666 78999999999999999999985 3 3467777654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.8e-108 Score=924.06 Aligned_cols=358 Identities=32% Similarity=0.509 Sum_probs=333.6
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCC-ccccchhh
Q 007724 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (591)
Q Consensus 132 ~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 210 (591)
.+.|+++||||||++|+. |+++|+++| ++.+|| +.|+|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 345999999999999995 889999999 555555 459999999999999999999 89999999
Q ss_pred HHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCe-eeeeecCCCccH
Q 007724 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNA 289 (591)
Q Consensus 211 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~-lIqfEDf~~~~A 289 (591)
++|||+||||| ++ |+||||++ +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~~----~i~~~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VF----DIEVDEED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---cc----ccccCCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 55 55555653 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007724 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (591)
Q Consensus 290 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (591)
|++|+|||++ +|||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 79999999999999999999999999999999999999999999999999986 3987 78
Q ss_pred eEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 368 ~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
+||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 455799999998 999999999 8999999999997 7999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007724 448 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 527 (591)
Q Consensus 448 Pt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v 527 (591)
|| ||||||||++||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999999 899999999999999999999999999999999999999999999
Q ss_pred Ccc--------------ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC
Q 007724 528 TEE--------------NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR 567 (591)
Q Consensus 528 ~~~--------------~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~ 567 (591)
+++ ++....|+|+.++ ++|+..||.||+++|+++|+|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~ 405 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATR 405 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccC
Confidence 876 6888999999888 57999999999999999999985
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.7e-99 Score=770.99 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.1
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCC
Q 007724 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (591)
Q Consensus 307 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l 386 (591)
|||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999975 9
Q ss_pred chhhhhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC
Q 007724 387 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 464 (591)
Q Consensus 387 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~ 464 (591)
+++|++||++.. +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999766 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCc
Q 007724 465 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 544 (591)
Q Consensus 465 GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~i 544 (591)
|||||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..+.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccC
Q 007724 545 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 585 (591)
Q Consensus 545 r~vs~~VA~aVa~~A~~~G~a~~~~~~~d~~~~i~~~~~~P 585 (591)
|+||..||.+|+++|+++|+|+..++|+|+++||++.||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987676789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=2.2e-96 Score=740.11 Aligned_cols=252 Identities=54% Similarity=0.898 Sum_probs=229.8
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCC
Q 007724 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (591)
Q Consensus 307 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l 386 (591)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++|||+||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999986 9999999999999999999999995 59
Q ss_pred chhhhhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 007724 387 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (591)
Q Consensus 387 ~~~k~~fA~~~~~~---~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt 463 (591)
+++|++|||+..+. .+|+|+|+.+|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007724 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 543 (591)
Q Consensus 464 ~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ 543 (591)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q 007724 544 IRKISANIAANVAAKAY 560 (591)
Q Consensus 544 ir~vs~~VA~aVa~~A~ 560 (591)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.7e-93 Score=718.36 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.5
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCC
Q 007724 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (591)
Q Consensus 307 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l 386 (591)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||+|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999997 499999999999999999999999965 9
Q ss_pred chhhhh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 007724 387 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (591)
Q Consensus 387 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt 463 (591)
.++|++ |+++.++..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007724 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 543 (591)
Q Consensus 464 ~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ 543 (591)
+|||||||||||+||+|||++|+|+||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007724 544 IRKISANIAANVAAKA 559 (591)
Q Consensus 544 ir~vs~~VA~aVa~~A 559 (591)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=4e-84 Score=621.91 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.3
Q ss_pred hhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeec
Q 007724 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (591)
Q Consensus 116 ~~~Ne~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (591)
|++||+|||++|.+|++|+||||||||||+|||+||++||+|+|||+|++|+|+|.++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCC
Q 007724 196 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 275 (591)
Q Consensus 196 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp 275 (591)
|||||++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCCccHHHHHHHHc
Q 007724 276 KVLIQFEDFANHNAFELLAKYG 297 (591)
Q Consensus 276 ~~lIqfEDf~~~~Af~lL~ryr 297 (591)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1.9e-58 Score=457.64 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.6
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCC
Q 007724 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (591)
Q Consensus 307 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l 386 (591)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 6999999999999999999999999999999999999999999975 3886 679999999999999997679
Q ss_pred chhhhhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 007724 387 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (591)
Q Consensus 387 ~~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt 463 (591)
.++|++|+++. .+. .+|.|+++. ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999863 222 378899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred CCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007724 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 543 (591)
Q Consensus 464 ~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ 543 (591)
|..||+|| +++.|+||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 54599999 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007724 544 IRKISANIAANVAAKA 559 (591)
Q Consensus 544 ir~vs~~VA~aVa~~A 559 (591)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.86 E-value=3.2e-08 Score=84.39 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=76.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999988763 3 267999988
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (591)
|+||++++.++.|.++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 555557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.63 E-value=0.006 Score=67.16 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=104.4
Q ss_pred CCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHHH---------------------HHHHc-------CCCeee
Q 007724 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 303 (591)
Q Consensus 252 R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~l---------------------L~ryr-------~~~~~F 303 (591)
..+-++|...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 335678888777765 345566655 4444433332 13443 379999
Q ss_pred c----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEc
Q 007724 304 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (591)
Q Consensus 304 N----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD 373 (591)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6678888777666653 446778999999999999999999888642 53 588888
Q ss_pred CCCcccCCCcCCCchhhhhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 374 SKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 374 ~~GLv~~~r~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.+- .| ...|. ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+-+.
T Consensus 243 ~dp----~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VDP----IC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CCc----hh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 641 11 11111 11123468888875 89999988877788888888885 334555555444
No 16
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.25 E-value=0.014 Score=64.61 Aligned_cols=188 Identities=18% Similarity=0.180 Sum_probs=131.1
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHH---HHHHHcCC---C-ee------e----ccCCCchhHHHH
Q 007724 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGTT---H-LV------F----NDDIQGTASVVL 315 (591)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~~---~-~~------F----NDDiQGTaaV~L 315 (591)
.+..|-..|...|+.++.+.+||..=|-=+|++. +... +.+.|+.- . .+ . .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 4556888899999999999999988888888874 3333 56777631 1 11 1 123446888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-cCCCcccCCCcCCCchh-----
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF----- 389 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~r~~~l~~~----- 389 (591)
.++..+++..|.+|++.||+|.|-|..|...|++|.. .|. +++-+ |++|-|+...+ |+..
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~ 282 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEI 282 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHH
Confidence 8999999999999999999999999999999999854 363 45555 99999998753 4332
Q ss_pred hh-------hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 007724 390 KK-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (591)
Q Consensus 390 k~-------~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~ 460 (591)
|. .|... ....-+- +.+-.++.||||=+.. .+..|++-...+-. +.-.||.=-+| |+ -+| +++++
T Consensus 283 k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L 356 (445)
T PRK09414 283 KEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVF 356 (445)
T ss_pred HHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHH
Confidence 21 11110 0001122 2344568999996665 77999999998853 45789999998 76 233 44555
Q ss_pred c
Q 007724 461 T 461 (591)
Q Consensus 461 ~ 461 (591)
.
T Consensus 357 ~ 357 (445)
T PRK09414 357 L 357 (445)
T ss_pred H
Confidence 4
No 17
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.17 E-value=0.0017 Score=70.76 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=81.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 308 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
.+.-++..+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|+ .+++++|+.. +| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5566777777666666654 4889999999999999999888754 264 5788887741 11 11
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEEcCCCC
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 449 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt 449 (591)
...+.+....-+..++.+++.. .|++|-+++.+ .+++++.++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111122467788875 89999887544 578999999875433366 889999997
No 18
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.11 E-value=0.048 Score=59.92 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=87.2
Q ss_pred CCeeec----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007724 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (591)
Q Consensus 299 ~~~~FN----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (591)
.+|+|| |.-.||+--++-+++ |.++..+.+.+++|+|.|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 788887 667899977666654 566778999999999999999999997753 253 5
Q ss_pred EEEEcCCCcccCCCcCCCchhhhhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 369 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 369 i~lvD~~GLv~~~r~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
++++|.+- .| ...|+ +.-...++.|+++. .|++|-+++..++++.+.++.|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887641 11 11111 11122357788865 89999888877788888887775 4557766666
Q ss_pred CCCCCCCCHHHH
Q 007724 448 PTSQSECTAEEA 459 (591)
Q Consensus 448 Pt~~aEct~edA 459 (591)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 54 55555444
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.09 E-value=0.0076 Score=60.58 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 56667778888899999999999999999999999999999763 54 678899999988876 4 4332
Q ss_pred -hhhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 007724 390 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (591)
Q Consensus 390 -k~~fA~~~~~~~~-------L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~ 460 (591)
...+.++...... =.+.+..++.||||=++. .+..|++..+.+ .-++|..-+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 1222221100100 013444568899997766 669999999988 4789998888 7742 456666
Q ss_pred c
Q 007724 461 T 461 (591)
Q Consensus 461 ~ 461 (591)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 20
>PLN02477 glutamate dehydrogenase
Probab=97.01 E-value=0.02 Score=62.90 Aligned_cols=186 Identities=22% Similarity=0.245 Sum_probs=127.8
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHH--HHHHHcC----CCeee----------ccCCCchhHHHHH
Q 007724 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE--LLAKYGT----THLVF----------NDDIQGTASVVLA 316 (591)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~--lL~ryr~----~~~~F----------NDDiQGTaaV~LA 316 (591)
.+..|-..|...|+.++.+.-||..=|-=+|.+..-.-. +.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456778889999999999999986555567776532211 4567753 11111 2233458888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEcCCCcccCCCcCCCchhhh-hhc
Q 007724 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 394 (591)
Q Consensus 317 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~r~~~l~~~k~-~fA 394 (591)
++-.+++..|.+|++.||+|.|-|..|.+.|++|.+. |. ++. +.|++|-|+...+ |+..+. .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 9999999999999999999999999999999988652 63 555 8999999998753 543221 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 007724 395 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (591)
Q Consensus 395 ~~~------~~--~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 461 (591)
+.. +. .-+-.+.+. .+.||||=+. .++..|++.+..+ .-.||.--+| |+ -+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233343 4899999655 4779999999986 6889999999 65 344 445554
No 21
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.99 E-value=0.004 Score=65.22 Aligned_cols=136 Identities=23% Similarity=0.358 Sum_probs=85.4
Q ss_pred ccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007724 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (591)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (591)
.+||++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 46777777777654444 34456666665555555554 889999999999999988887754 243
Q ss_pred CeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEE
Q 007724 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 444 (591)
Q Consensus 367 ~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFa 444 (591)
++|+++|+. .+| .....+.|-.......++.+++.. .|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 111 112222221111112357777765 8999999887754 66666654322 2347778
Q ss_pred cCCCC
Q 007724 445 LSNPT 449 (591)
Q Consensus 445 LSNPt 449 (591)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 22
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.97 E-value=0.013 Score=64.41 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=93.3
Q ss_pred CCeeec----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007724 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (591)
Q Consensus 299 ~~~~FN----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (591)
.+|+|+ |.-.||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 667899998887776 566788999999999999999999987754 263 4
Q ss_pred EEEEcCCCcccCCCcCCCchhhhhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 369 i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
++++|.+ +.+..+|+. +-...++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777753 222233332 1112346788865 79999999888888888888885 4557766776
Q ss_pred CCCCCCCCHHHHhc
Q 007724 448 PTSQSECTAEEAYT 461 (591)
Q Consensus 448 Pt~~aEct~edA~~ 461 (591)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 7888877654
No 23
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.83 E-value=0.0046 Score=67.48 Aligned_cols=120 Identities=27% Similarity=0.408 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++++++|+.. .| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---HHH
Confidence 355666666544444433 6889999999999999999887753 264 6899887741 11 111
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEEcCCCC
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 449 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~--erPIIFaLSNPt 449 (591)
..+.|.....+..++.+++.. .|++|-+++.+ ..++++.++.+.+.. ...+|+=||+|.
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 222221111112356677764 89999988755 478999999875322 335888999997
No 24
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.78 E-value=0.045 Score=60.74 Aligned_cols=181 Identities=16% Similarity=0.108 Sum_probs=124.5
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHH--HHHHHcC---C-Ceee----------ccCCCchhHHHHH
Q 007724 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE--LLAKYGT---T-HLVF----------NDDIQGTASVVLA 316 (591)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~--lL~ryr~---~-~~~F----------NDDiQGTaaV~LA 316 (591)
.+-.|...|.-.||..+.+.+||+.-|--+|++..-.-. +.+.|+. . .-+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 456678889999999999999999988889987633222 6667752 1 2233 2334568888899
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc
Q 007724 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (591)
Q Consensus 317 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~ 396 (591)
++-.+++..|.+|+++||+|-|.|..|.-.|++|.+. |. +=+-+-|++|-|+... .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 9999999999999999999999999999999988753 64 3455689999888764 365544322110
Q ss_pred c-----C---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 007724 397 H-----E---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (591)
Q Consensus 397 ~-----~---------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (591)
. . .. -+-.+ +-.++.|+||=+.. .+..|++.++.+.... .-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCCCCC
Confidence 0 0 00 01111 22356888886555 6789999999885311 127777777 54
No 25
>PLN02494 adenosylhomocysteinase
Probab=96.74 E-value=0.018 Score=64.35 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=93.9
Q ss_pred CCeeec----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007724 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (591)
Q Consensus 299 ~~~~FN----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (591)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 446798888877777 667888999999999999999999998853 263 5
Q ss_pred EEEEcCCCcccCCCcCCCchhhhhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 369 i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
++++|.+.. +...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 787776421 1111111 1112368888875 89999877777788899999885 5678888887
Q ss_pred CCCCCCCCHHHHhcc
Q 007724 448 PTSQSECTAEEAYTW 462 (591)
Q Consensus 448 Pt~~aEct~edA~~w 462 (591)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 65 77877766654
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.66 E-value=0.014 Score=56.64 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhc
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA 394 (591)
.+.+-.++....+|++.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------- 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-------------------
Confidence 33344555556789999999999997 59889888864 242 58888863
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 395 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 395 ~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
..+|.+.++. .|++|..++.+..|+++.++ +.-+|+=|+.|-
T Consensus 78 -----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788886 99999999988899999764 346788888876
No 27
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.62 E-value=0.015 Score=62.36 Aligned_cols=113 Identities=20% Similarity=0.326 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
|+++...++--|.+..|..|++.+++|.|| |+.|--++++|... .|. ++++++++. .. .+..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~---rl~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QE---RLQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HH---HHHH
Confidence 678888888888999999999999999999 89999999888642 243 678888764 11 2333
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCC--CCHHHHHHHHcCCCCc-EEEEcCCCCC
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKP-LILALSNPTS 450 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Ft~evv~~Ma~~~erP-IIFaLSNPt~ 450 (591)
.+.++.. ....+|.+++.. +|+++=+++.+.. .+++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333421 123467788875 8999988776432 677655 344 5556899864
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.55 E-value=0.019 Score=59.91 Aligned_cols=138 Identities=19% Similarity=0.251 Sum_probs=89.9
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 308 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
..+-+++=.++.-+++..+..|.+.+++|+|+|.+|..+|+.+... |. +++++|++. +.+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~-------~~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS-------ADLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH-------HHHH
Confidence 3445565556667778888899999999999999999999988642 53 588888741 1111
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcE
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 467 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~Gra 467 (591)
..+ .+....-...+|.+.++. .|++|=+. ..+.++++.++.|. +.-+|+=+|..- -++.++.|-+ -+-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011122457777775 89999654 34578999988885 456888776522 4556644433 34478
Q ss_pred EEecCCC
Q 007724 468 IFASGSP 474 (591)
Q Consensus 468 ifAsGSP 474 (591)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888865
No 29
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.49 E-value=0.14 Score=57.01 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=130.3
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHH---HHHHHcC----CCeeecc---CC-------CchhHHHH
Q 007724 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVL 315 (591)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~----~~~~FND---Di-------QGTaaV~L 315 (591)
.+..|-..|.-.||..+.+..||+.=|-=.|++. ++.+ +++.|+. ...++.- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4555788899999999998889988777788873 4433 5667753 2223211 12 23888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhh---
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP--- 392 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~--- 392 (591)
-++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 89999999999999999999999999999999988653 64 5577789999998864 35543311
Q ss_pred ------------hccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 007724 393 ------------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (591)
Q Consensus 393 ------------fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~e 457 (591)
++...+.. -+-.+ +-.++.||||=+.. .+..|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 11010010 01122 23467899996665 67999999999854 35678998898 542 33 44
Q ss_pred HHhc
Q 007724 458 EAYT 461 (591)
Q Consensus 458 dA~~ 461 (591)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.45 E-value=0.0042 Score=57.34 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=66.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc---cCCCCCH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~---~~~~~~L 403 (591)
.++++.|++++|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 489999999999999998888877653 65 789999873 222 22333333110 1123456
Q ss_pred HHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 007724 404 LDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPLILALSNPTS 450 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (591)
.+.+.. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 666765 899999887663 7888887743211 249999999974
No 31
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.44 E-value=0.21 Score=55.74 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=126.7
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHH---HHHHHc---CCC-eeecc----------CCCchhHHHH
Q 007724 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYG---TTH-LVFND----------DIQGTASVVL 315 (591)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr---~~~-~~FND----------DiQGTaaV~L 315 (591)
.+..|-..|...||..+.+..||+.=|-=.|++. ++.+ +.+.|+ +.+ .|+-. --..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556678899999999999999999999999984 4433 455554 222 22211 1224888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEcCCCcccCCCcCCCchhhh---
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 391 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~r~~~l~~~k~--- 391 (591)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 89999999999999999999999999999999988653 63 455 999999999875 3554332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCC
Q 007724 392 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 450 (591)
Q Consensus 392 ------------~fA~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 450 (591)
.|+...+... +- +.+-.++.|||+=+.. .+..|++-.+.+-+ +.-.+|.=-+| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 2211000000 11 1222368899997776 57999999998853 34568888888 663
No 32
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.16 E-value=0.052 Score=54.93 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=89.9
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 308 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4578888888999999999999999999999999999999988653 54 44559999999988753 43
Q ss_pred hhhh-hhccccC------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 007724 388 HFKK-PWAHEHE------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (591)
Q Consensus 388 ~~k~-~fA~~~~------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (591)
.... .+.+... .. -+- +.+-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~-~~i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITN-EELLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCC-ccceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 3221 1111100 00 122 234445889999777 5779999999988 4889999999 55
No 33
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.97 E-value=0.12 Score=58.05 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=84.2
Q ss_pred CCeeeccCCCchhHHH-------HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 007724 299 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (591)
Q Consensus 299 ~~~~FNDDiQGTaaV~-------LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~l 371 (591)
.+|++|-+---|-++. ++.+-+.+|.++..|.+.+++|+|.|..|.++|..+.. .|. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899986655444433 44445557788899999999999999999999998864 263 5777
Q ss_pred EcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 007724 372 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (591)
Q Consensus 372 vD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (591)
+|++-. +. +.... +.-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 766411 10 11111 11122468888875 99999988888899999999996 45566655554
No 34
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.97 E-value=0.066 Score=56.03 Aligned_cols=127 Identities=22% Similarity=0.291 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhh
Q 007724 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (591)
Q Consensus 314 ~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~f 393 (591)
+-+++..+++..+.++.+.|++|+|+|.+|..++..+.. .| -+++++|++- .+..+
T Consensus 135 aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~------------~~~~~ 190 (296)
T PRK08306 135 AEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS------------AHLAR 190 (296)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH------------HHHHH
Confidence 334556677788889999999999999999999888754 25 2688888851 11111
Q ss_pred ccc----cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-cEE
Q 007724 394 AHE----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RAI 468 (591)
Q Consensus 394 A~~----~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G-rai 468 (591)
++. .....+|.+.++. .|++|-++. ...++++.++.|. +.-+|+=++... -.|..+.|.+ .| +++
T Consensus 191 ~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~ 260 (296)
T PRK08306 191 ITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKAL 260 (296)
T ss_pred HHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEE
Confidence 211 0112467777875 899998653 5578999998886 466777555433 2344443322 34 455
Q ss_pred EecCCC
Q 007724 469 FASGSP 474 (591)
Q Consensus 469 fAsGSP 474 (591)
.++|-|
T Consensus 261 ~~~~lp 266 (296)
T PRK08306 261 LAPGLP 266 (296)
T ss_pred EECCCC
Confidence 567654
No 35
>PLN00203 glutamyl-tRNA reductase
Probab=95.92 E-value=0.035 Score=62.64 Aligned_cols=201 Identities=19% Similarity=0.282 Sum_probs=113.6
Q ss_pred chhHHHHHHHHHHHHHhCC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
|--+|+-+++=-|.+.-|. +|.+.+|+|+|||..|..++..+.. .|. ++|+++++. .+| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 3344555555556666654 6999999999999999888877653 364 679998874 122 22
Q ss_pred hhhhhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CCc-EEEEcCCCCCCCCCCHHHH
Q 007724 388 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPTSQSECTAEEA 459 (591)
Q Consensus 388 ~~k~~fA~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~---erP-IIFaLSNPt~~aEct~edA 459 (591)
.....|-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~--- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS--- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc---
Confidence 22222210 01123467788875 89999876544 489999999974321 244 5667999963111111
Q ss_pred hcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHH-HcccC--ccccCCCc
Q 007724 460 YTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL-AKQVT--EENFEKGL 536 (591)
Q Consensus 460 ~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aL-A~~v~--~~~~~~g~ 536 (591)
...|+++|===-|-.+......-..+-... |+.+ .+.+. .+.+..-.
T Consensus 380 -----------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~-Ae~II~ee~~~F~~w~~~~~ 429 (519)
T PLN00203 380 -----------------------------ELESARVYNVDDLKEVVAANKEDRLRKAME-AQTIIREESKNFEAWRDSLE 429 (519)
T ss_pred -----------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 011222221111222222222111111222 2222 11111 11344567
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHHc
Q 007724 537 IYPPFSNIRKISANIAANVAAKAYEL 562 (591)
Q Consensus 537 l~P~~~~ir~vs~~VA~aVa~~A~~~ 562 (591)
+-|-+.++|+-...|..+=.+.+++.
T Consensus 430 ~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 430 TVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998888888865
No 36
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.86 E-value=0.16 Score=52.68 Aligned_cols=133 Identities=20% Similarity=0.143 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~r~~~l~ 387 (591)
.||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+ .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 47777788888899999999999999999999999999998865 263 455 999999998875 344
Q ss_pred hhhh---------------hhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 007724 388 HFKK---------------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (591)
Q Consensus 388 ~~k~---------------~fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (591)
..+. .|....+.. -+-.| +-.++.||||=+.. ++..|++.++.+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~-~~~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK-PWEVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcc-hhcCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 2211 110000000 12222 22457899996654 67999999999843 35789999998 76
Q ss_pred CCCCCCHHHHhc
Q 007724 450 SQSECTAEEAYT 461 (591)
Q Consensus 450 ~~aEct~edA~~ 461 (591)
+. .+++.+.
T Consensus 159 t~---~a~~~L~ 167 (254)
T cd05313 159 TA---EAIEVFR 167 (254)
T ss_pred CH---HHHHHHH
Confidence 32 2445544
No 37
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.80 E-value=0.047 Score=60.08 Aligned_cols=214 Identities=21% Similarity=0.308 Sum_probs=127.8
Q ss_pred ccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007724 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (591)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (591)
..||..=.|.|.+--. -.|--+|.-|++=-|-++.| +|++.+++|+|||..|..+|..|... |+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~-~L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFG-SLKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhc-ccccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 4566666777753210 12333444445555555554 49999999999999999998888753 65
Q ss_pred CeEEEEcCCCcccCCCcCCCchhhhhhcccc----CCCCCHHHHhcccCCcEEEec-cCCCCCCCHHHHHHHHcCCCCcE
Q 007724 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGS-SGVGRTFTKEVIEAMASFNEKPL 441 (591)
Q Consensus 367 ~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~----~~~~~L~e~V~~vkPtvLIG~-S~~~g~Ft~evv~~Ma~~~erPI 441 (591)
++|+++.+. ..| -+.+|+.- -....|.+.+.. .||+|-. |++.-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNRT----~er-------A~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANRT----LER-------AEELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcCC----HHH-------HHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 789888662 222 22233321 122456677766 8888855 44456889998887655444459
Q ss_pred EEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007724 442 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 521 (591)
Q Consensus 442 IFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~ 521 (591)
||=|+||-.- ++ ..+.-||+++|===-|-.+.-.-..-..+... +|+
T Consensus 270 ivDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~-~ae 316 (414)
T COG0373 270 IVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEAA-KAE 316 (414)
T ss_pred EEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHHH-HHH
Confidence 9999999831 11 12334566666444444443332222222222 222
Q ss_pred HH-----HcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCC
Q 007724 522 AL-----AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 564 (591)
Q Consensus 522 aL-----A~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~ 564 (591)
++ +.+. +.+..-.+-|.+..+|+-+..|...-.+.|.+.--
T Consensus 317 ~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~ 362 (414)
T COG0373 317 AIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKLP 362 (414)
T ss_pred HHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 2221 13445678899999999888888888888886543
No 38
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.65 E-value=0.067 Score=56.01 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
+.+-.|-.|++..++..+.+++++++|++|+|- +|-.||.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 346677799999999999999999999999997 99999998864 24 2 67888752
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc-CCCC---CCCCCCHHHHh
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAY 460 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt---~~aEct~edA~ 460 (591)
..+|.+.++ +.|++|-+++.++.|+.+.++ +.-+|+=. .||. -.-++.+|++.
T Consensus 193 ------------t~~L~~~~~--~aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~ 249 (283)
T PRK14192 193 ------------TQNLPELVK--QADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIE 249 (283)
T ss_pred ------------chhHHHHhc--cCCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhh
Confidence 124666666 499999999999989988764 44566544 3663 11245555554
No 39
>PLN00106 malate dehydrogenase
Probab=95.60 E-value=0.063 Score=57.18 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=80.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhc
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA 394 (591)
|.-|.|+|..|..-. .||+|+|| |..|.-+|..|+. .|+ .+.+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 445778898887665 59999999 9999999987753 254 35899999865 1111112332211 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 395 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 395 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
+-. ....++.++++. .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 133467888887 8888866665421 2457788889999999999999999
No 40
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.59 E-value=0.043 Score=60.23 Aligned_cols=210 Identities=14% Similarity=0.203 Sum_probs=111.8
Q ss_pred cHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007724 288 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (591)
Q Consensus 288 ~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (591)
.||+.=.|-|.+.-+ + .|--+|+-+++=-|-+.- .++++.|++|+|||.+|-.+|..+.. .|. +
T Consensus 143 ~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~ 206 (414)
T PRK13940 143 KVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------K 206 (414)
T ss_pred HHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------C
Confidence 455555555543211 0 122234444443333333 45889999999999999888887753 365 6
Q ss_pred eEEEEcCCCcccCCCcCCCchhhhhhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EEE
Q 007724 368 KICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILA 444 (591)
Q Consensus 368 ~i~lvD~~GLv~~~r~~~l~~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~erPI-IFa 444 (591)
+|+++.+. .+|. ......|. ....+..+|.+.+.. .|++|-+++.+. ++|.+.++ .+|. |+=
T Consensus 207 ~I~V~nRt----~~ra---~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT----IEKA---QKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFID 271 (414)
T ss_pred EEEEECCC----HHHH---HHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEE
Confidence 89988774 2221 12222221 111223456777775 999998887664 67866542 4665 467
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHH----
Q 007724 445 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS---- 520 (591)
Q Consensus 445 LSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA---- 520 (591)
|++|-.-- | . .+...|+++|===-|-.+......-..+....|-
T Consensus 272 LavPRdid---p--~---------------------------v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~ 319 (414)
T PRK13940 272 ISIPQALD---P--K---------------------------LGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIV 319 (414)
T ss_pred eCCCCCCC---c--c---------------------------ccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997211 0 0 0111222222111122222221111112122211
Q ss_pred HHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007724 521 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 562 (591)
Q Consensus 521 ~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 562 (591)
+.+.++. +.+..-.+-|-+.++|+-...|...-.+.+.+.
T Consensus 320 e~~~~f~--~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 320 KSLEEYL--EKEKAIISNSAIKELFQKADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222221 134456789999999998888888888888755
No 41
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.58 E-value=0.17 Score=52.18 Aligned_cols=191 Identities=18% Similarity=0.180 Sum_probs=101.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhh-------hhccc--------
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAHE-------- 396 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~-------~fA~~-------- 396 (591)
.||.|+|+|..|.+||..++.. | .+++++|.+- + .++..+. .+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999887643 5 3689998641 1 1111111 11000
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 007724 397 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 469 (591)
Q Consensus 397 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~Graif 469 (591)
.....++.++++. .|++|=+-...-.+.+++++.+.+......|++ ||.+++ .+.++.+.++-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccE
Confidence 0113578888876 788775432222356777777777666556663 565554 444444433211123
Q ss_pred ecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCc-cc-CCCCCchhh
Q 007724 470 ASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGL-IY-PPFSNIRKI 547 (591)
Q Consensus 470 AsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~-l~-P~~~~ir~v 547 (591)
....||.|+.... ..-| .....-+++.+ +.+..+...+. +.. ++ |... --|
T Consensus 139 vg~Hf~~p~~~~~---------lvev----------v~~~~t~~~~~-~~~~~~~~~~G-----k~pv~v~~d~p--gfi 191 (287)
T PRK08293 139 LALHFANEIWKNN---------TAEI----------MGHPGTDPEVF-DTVVAFAKAIG-----MVPIVLKKEQP--GYI 191 (287)
T ss_pred EEEcCCCCCCcCC---------eEEE----------eCCCCCCHHHH-HHHHHHHHHcC-----CeEEEecCCCC--CHh
Confidence 3356777754221 1122 22233355544 44555555443 222 22 2222 245
Q ss_pred HHHHHHHHHHHHH---HcCCCCCCCCchhHHHHH
Q 007724 548 SANIAANVAAKAY---ELGVATRLPRPQNLVKCA 578 (591)
Q Consensus 548 s~~VA~aVa~~A~---~~G~a~~~~~~~d~~~~i 578 (591)
..+|-.++...|. ++|+|+ |+|+....
T Consensus 192 ~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 192 LNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 5666666665554 589875 45555443
No 42
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.50 E-value=0.085 Score=55.52 Aligned_cols=95 Identities=17% Similarity=0.334 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
+-.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| -.+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445678889999999999999999999999988 99999998864 24 3577777631
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
.+|.+.+++ .|++|...+.++.|++++++ +.-+|+=++.
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi 231 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGN 231 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCC
Confidence 257788886 99999999999999998764 3445555544
No 43
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.49 E-value=0.051 Score=49.91 Aligned_cols=108 Identities=22% Similarity=0.317 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~ 395 (591)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.+. |. .+++++|++ .+ ......+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~---~~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LE---KAKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HH---HHHHHHHHHhh
Confidence 58899999988889999999999998888888777532 31 578888874 11 12222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEEcC-CCC
Q 007724 396 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 449 (591)
Q Consensus 396 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt 449 (591)
. .....++.++++. +|++|-+...+- .|.+.. ..+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 1 0123466666654 899997765432 133222 23566777775 454
No 44
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.46 E-value=0.044 Score=57.00 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch-hhhhhc
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 394 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~-~k~~fA 394 (591)
.|++.+++..+..++.++++++|||.||..|+..+.. .|+ ++|+++|+. ..|.+.|.. .+..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4677778766667888999999999999999888864 375 679999984 222222211 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 007724 395 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (591)
Q Consensus 395 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 422 (591)
. ......++.+.++. .|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 00112345555654 89999887655
No 45
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.44 E-value=0.1 Score=51.60 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=83.5
Q ss_pred chhHHHHHHHHHHHHHh--CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCC
Q 007724 309 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~--g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l 386 (591)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -++++.|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 46666777788888886 8899999999999999999999988653 6 3688888651 123
Q ss_pred chhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 007724 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (591)
Q Consensus 387 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 461 (591)
..++..|.- ... +..+... .+.|+++=++. +++.|++.++.| .-++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 111 2233333 37999995554 679999999999 3678988888 6632 33455554
No 46
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.16 E-value=0.11 Score=50.12 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+.+++.+..+++..|..+++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 777888888888888899999999999997 9888888877754 24 478888764
No 47
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.53 E-value=0.2 Score=54.02 Aligned_cols=122 Identities=11% Similarity=0.166 Sum_probs=71.4
Q ss_pred ccHHHHHHHHcCCCeeeccCCCchhHHHHHH--HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 007724 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (591)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAg--ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee 364 (591)
..||..=.|-|.+.-. |+++|.++. ...+ +.. .+|++.+++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 3455555566643211 444444443 2333 333 56999999999999998777776654 365
Q ss_pred hcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHH-HHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCC
Q 007724 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 438 (591)
Q Consensus 365 A~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~-e~V~-~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e 438 (591)
++|+++.+.-- + .+|.. +. +++. ..+.||+|=. +++.-..|.+.++.. .+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 68998887531 1 22321 10 1111 1358999964 333346677765532 22
Q ss_pred CcEEEEcCCCCC
Q 007724 439 KPLILALSNPTS 450 (591)
Q Consensus 439 rPIIFaLSNPt~ 450 (591)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
No 48
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.49 E-value=0.14 Score=55.26 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=63.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc----cCCCCCHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~----~~~~~~L~ 404 (591)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..| +......|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999887642 63 48888874 111 22222222211 11123578
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 405 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 405 e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
+.++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88874 8999987532 4568999999985 5678887774
No 49
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.31 E-value=0.066 Score=45.60 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=63.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-cCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+.+.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 789999999999999888753 54 34678855 553 122333333332110 01268899995
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (591)
+|++| ++-.+ ..-+++++.+....+..+|..++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 89888 66655 4566788888667788999988886
No 50
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.26 E-value=0.1 Score=54.10 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=61.6
Q ss_pred CeeeccCCCchhHHHHHHHHHHHHHhCC--CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 300 HLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 300 ~~~FNDDiQGTaaV~LAgll~A~r~~g~--~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
..=+|-|. .|++.+++..+. ++++++++++|||.||-.|+..|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC--
Confidence 44566664 356777776663 6889999999999998888776654 375 789999873
Q ss_pred ccCCCcCCCchhhhhhcccc--CCCC---CHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007724 378 IVSSRKDSLQHFKKPWAHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEV 429 (591)
Q Consensus 378 v~~~r~~~l~~~k~~fA~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ft~ev 429 (591)
.+|.+.|.+ .|.... .... .+.+++. ++|++|.++..+-.++.+.
T Consensus 159 --~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 159 --PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred --HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 222222221 121100 0111 2323343 4899999988775444433
No 51
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.19 E-value=0.099 Score=57.64 Aligned_cols=105 Identities=20% Similarity=0.352 Sum_probs=66.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCC-----CCCHH
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~-G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~-----~~~L~ 404 (591)
.||+|+||||+ -.-.|+..+.+.. .++ -+.|||+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444555444322 342 4789999975 33322122222222222 112 25799
Q ss_pred HHhcccCCcEEEe--------------------------ccCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 007724 405 DAVKVIKPTILIG--------------------------SSGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 405 e~V~~vkPtvLIG--------------------------~S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 449 (591)
||++. +|.+|- +.|.||.|. .++++.|.++|+..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~ 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH
Confidence 99987 777772 234445554 38889999999999999999998
No 52
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.98 E-value=0.43 Score=46.58 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=75.0
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 308 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
.||+--++-|++ |.++..|...++|++|-|--|-|+|+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 366666666666 5788999999999999999999999988653 5 367777653
Q ss_pred hhhhhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 007724 388 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (591)
Q Consensus 388 ~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~ 461 (591)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 22211121 22233579999986 99999999988899999999996 4555554443 236777665443
No 53
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.57 Score=49.45 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-+|++..++..+.+|++.+++++|-|. .|.-+|.||.. .| -.+.+++|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4678889999999999999999999999998 99999998864 24 356777653
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (591)
.++|.+.+++ .|++|-..|.++.|+.++|+ +.-+|+=..
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888887 99999999999999998887 566776555
No 54
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.89 E-value=0.15 Score=52.33 Aligned_cols=130 Identities=22% Similarity=0.298 Sum_probs=88.5
Q ss_pred CCCchhHHHHHHHHHHHHHhCCC-cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcC
Q 007724 306 DIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 384 (591)
Q Consensus 306 DiQGTaaV~LAgll~A~r~~g~~-l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~ 384 (591)
--+-||-=+..++-.+++..+.. +++.|++|-|.|..|...|+.+.+. |. +=+-+-|++|.|++..+-
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCc
Confidence 34568888888999999996666 9999999999999999999988763 53 445667888888865421
Q ss_pred CCchhhhhhccccCCCCCH-----------HH--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEEcCC-CC
Q 007724 385 SLQHFKKPWAHEHEPVNNL-----------LD--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-PT 449 (591)
Q Consensus 385 ~l~~~k~~fA~~~~~~~~L-----------~e--~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-Pt 449 (591)
+++.-.+...+.......+ .+ .+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 75 d~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 75 DVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred hHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 1111111111101101111 11 4555799999988 668899999998 664 24789999999 55
No 55
>PRK05086 malate dehydrogenase; Provisional
Probab=93.42 E-value=0.44 Score=50.35 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=66.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc-ccCCCCCHHHHhcc
Q 007724 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (591)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~-~~~~~~~L~e~V~~ 409 (591)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+. ..... ......++.+.++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999998877432 122 257889997522 11110012211 00000 00012467788876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.|++|=+.+.+ |. ..++++++|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 88888665543 21 4568999999999999999999998
No 56
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.19 E-value=0.069 Score=49.99 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=64.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC-CcccCCCcCCCchhhhhhccccCCCCCHHHHhccc
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (591)
||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-++..-..+..+.++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 55 3569999986 2111 10001222211111111111255677775
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 411 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 411 kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.|++|=+.+.+ |- +-+++.+.+++++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89988555443 21 2246777788899999999999997
No 57
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.17 E-value=2.9 Score=43.31 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=65.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc------c---------
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH------E--------- 396 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~------~--------- 396 (591)
++|.|+|+|..|.+||..++.. |. +++++|.+- +.++..+....+ +
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME-------GALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH-------HHHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5799999999999999988653 53 688888631 112222111000 0
Q ss_pred -cCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCC
Q 007724 397 -HEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 474 (591)
Q Consensus 397 -~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSP 474 (591)
.....++.++++. .|++| ++..... -.+++++.+......-.|+. ||..+. +.++.-++.....-|..+-|
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCDPDTIFA-TNTSGL---PITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCCCCcEEE-ECCCCC---CHHHHHhhcCCcccEEEEcc
Confidence 0112467777765 67766 4443321 25567777766555444443 443332 24455454433333444456
Q ss_pred CCcc
Q 007724 475 FDPF 478 (591)
Q Consensus 475 F~pv 478 (591)
|.|.
T Consensus 139 ~~p~ 142 (311)
T PRK06130 139 FTPA 142 (311)
T ss_pred CCCC
Confidence 6555
No 58
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.13 E-value=0.17 Score=50.07 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478899999999999999999988764 76 799999997
No 59
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.85 E-value=0.19 Score=55.33 Aligned_cols=128 Identities=16% Similarity=0.237 Sum_probs=73.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCC-----CCCHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 405 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~-----~~~L~e 405 (591)
.||+|+||||+ -.-+++...+.+...+ .-+.|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.|
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 38999999996 3334443333222233 237899999862 12211111111122221 111 257999
Q ss_pred HhcccCCcEEEeccCCCC--------------------------CC--------CHHHHHHHHcCCCCcEEEEcCCCCCC
Q 007724 406 AVKVIKPTILIGSSGVGR--------------------------TF--------TKEVIEAMASFNEKPLILALSNPTSQ 451 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g--------------------------~F--------t~evv~~Ma~~~erPIIFaLSNPt~~ 451 (591)
|++. +|.+|=.-.+|| .| =.++++.|.++|..-+|+=.|||..
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~- 148 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG- 148 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH-
Confidence 9987 787774433333 11 2378888899999999999999983
Q ss_pred CCCCHHHHhcccCCcEEEecCC
Q 007724 452 SECTAEEAYTWSKGRAIFASGS 473 (591)
Q Consensus 452 aEct~edA~~wt~GraifAsGS 473 (591)
...+-++++++-|+|=-+.+
T Consensus 149 --ivt~a~~k~~~~rviGlc~~ 168 (419)
T cd05296 149 --IVTEAVLRHTGDRVIGLCNV 168 (419)
T ss_pred --HHHHHHHHhccCCEEeeCCc
Confidence 44445566674454433333
No 60
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.85 E-value=0.22 Score=50.81 Aligned_cols=125 Identities=21% Similarity=0.314 Sum_probs=75.9
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc--cCCCCCHHHHhccc
Q 007724 334 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 410 (591)
Q Consensus 334 iv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~--~~~~~~L~e~V~~v 410 (591)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....+|.+...++ .. -....++.++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 579999 99999999887642 42 123689999986411111111133322222 11 1113467888877
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecC
Q 007724 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 472 (591)
Q Consensus 411 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraifAsG 472 (591)
.|++|=+.+.++. .-+++.+.|.++|...+++-.|||. .....-+++++ .-+=+|++|
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEee
Confidence 8888865554332 2468888999999999999999998 33344445553 122355555
No 61
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.72 E-value=0.43 Score=50.33 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-+|++.=++..+.++++++++++|.| ..|.-+|.++.. .|. .+.+++++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 356778888888999999999999999999 999999998864 253 35556442
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ .|++|...+.++.+++++|+
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1246788887 99999999999999999995
No 62
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.67 E-value=1.8 Score=46.04 Aligned_cols=153 Identities=10% Similarity=0.175 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeeccC-C--CchhHHHHHHHHHHHHH---------------
Q 007724 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-I--QGTASVVLAGVVAALKL--------------- 324 (591)
Q Consensus 263 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDD-i--QGTaaV~LAgll~A~r~--------------- 324 (591)
.|++++..+ .|-+ +|+.-=-+..| .++-.--+..+.+.|-- . +.+|=-+++.+|+.+|.
T Consensus 59 ~~~l~~~~~-~~lk-~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNE-LGIK-QIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhh-cCce-EEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 456655543 1111 25544333333 34433334677777742 2 34555678888876652
Q ss_pred ----hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCC
Q 007724 325 ----IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV 400 (591)
Q Consensus 325 ----~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~ 400 (591)
.|..|.+.+|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . . ....++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~----~~~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--A----KAATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--H----hHHhhc---ccc
Confidence 13458899999999999999999998533 253 688888742 0 0 011111 123
Q ss_pred CCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 401 NNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 401 ~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
.+|.|+++. .|+++=.. ...++|+++.++.|. +..++.=.|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 579999986 88888442 123577888888885 5667776666
No 63
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.66 E-value=0.37 Score=50.23 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=28.9
Q ss_pred eCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHH
Q 007724 485 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 522 (591)
Q Consensus 485 ~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~a 522 (591)
..||+..|-+.++.+.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35678888888898888888888777887777766543
No 64
>PRK08328 hypothetical protein; Provisional
Probab=92.56 E-value=0.068 Score=53.95 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=73.1
Q ss_pred HHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 007724 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (591)
Q Consensus 293 L~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv 372 (591)
++||..++..|..+. -.+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877766665421 2457788999999999999999999764 87 789999
Q ss_pred cCCCcccCCCcCCCchhhhhhccccCCC----CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-EcCC
Q 007724 373 DSKGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSN 447 (591)
Q Consensus 373 D~~GLv~~~r~~~l~~~k~~fA~~~~~~----~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSN 447 (591)
|.+= +.. .+|..+ --|-.+.-.. ....+.++...|++.|=... +-++++-+...-+ +.-+|| +.-|
T Consensus 58 D~D~-ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQT-PEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCCc-cCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCC
Confidence 9862 111 124321 1111111111 12345567788998876533 3467665554332 445666 5567
Q ss_pred CCC
Q 007724 448 PTS 450 (591)
Q Consensus 448 Pt~ 450 (591)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 653
No 65
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.39 E-value=0.47 Score=49.61 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=74.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc-CCCCCHHHHhcccC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~-~~~~~L~e~V~~vk 411 (591)
||.|+|+|.+|..+|..++. .|+ ..+|.++|.+-=..++-..+|.+......... -...+. +.++ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~--~ 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCK--D 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhC--C
Confidence 89999999999999998754 265 35799999852211111111221110000000 011233 3455 4
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEecCCC
Q 007724 412 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSP 474 (591)
Q Consensus 412 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G--raifAsGSP 474 (591)
.|++|=+++.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++= +-+|.+|.-
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999977776421 12567788889999999999999983 444444444211 236666644
No 66
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.32 E-value=0.3 Score=51.14 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4677888888888999999999999998877665543 375 789999984
No 67
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.10 E-value=1.2 Score=50.65 Aligned_cols=182 Identities=17% Similarity=0.217 Sum_probs=93.4
Q ss_pred hcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCC-ccHHHHHHHHcCCCeeeccCCCchhHHHHH
Q 007724 238 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN-HNAFELLAKYGTTHLVFNDDIQGTASVVLA 316 (591)
Q Consensus 238 ~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~-~~Af~lL~ryr~~~~~FNDDiQGTaaV~LA 316 (591)
.|.++-.++|+-|+-.. .++++.+.+ + .=.+|-+|.+-. .+|. +-+..--+-.|-|=-||..|
T Consensus 82 ~l~~g~~li~~l~p~~~----~~l~~~l~~----~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~a 145 (509)
T PRK09424 82 LLREGATLVSFIWPAQN----PELLEKLAA----R--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEA 145 (509)
T ss_pred hcCCCCEEEEEeCcccC----HHHHHHHHH----c--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHH
Confidence 45566677777776322 233333322 1 234566776542 1111 11222334455565555544
Q ss_pred HHHHHHHHhC-----CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcC---CC--
Q 007724 317 GVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL-- 386 (591)
Q Consensus 317 gll~A~r~~g-----~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~---~l-- 386 (591)
+-.-.--..| ......|++|+|||.+|.+.+..... .| | +++.+|.+- +|.+ .|
T Consensus 146 a~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~~----~rle~aeslGA 209 (509)
T PRK09424 146 AHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTRP----EVAEQVESMGA 209 (509)
T ss_pred HHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCCH----HHHHHHHHcCC
Confidence 4322111111 13458999999999999888765543 36 2 477777641 1100 00
Q ss_pred ----------chhhhhhccccCCCCCHHHHh-----cc-cCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEc
Q 007724 387 ----------QHFKKPWAHEHEPVNNLLDAV-----KV-IKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILAL 445 (591)
Q Consensus 387 ----------~~~k~~fA~~~~~~~~L~e~V-----~~-vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaL 445 (591)
......|++... .++.+.. +. -+.|++|.+++.+| +++++.++.|. ..-+|.=+
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdv 284 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDL 284 (509)
T ss_pred eEEEeccccccccccchhhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEE
Confidence 001112333211 1221211 11 14999999999876 67999999996 44566667
Q ss_pred CCCC-CCCCCCH
Q 007724 446 SNPT-SQSECTA 456 (591)
Q Consensus 446 SNPt-~~aEct~ 456 (591)
+.+. ..+|++.
T Consensus 285 g~~~GG~~e~t~ 296 (509)
T PRK09424 285 AAENGGNCELTV 296 (509)
T ss_pred ccCCCCCccccc
Confidence 7653 3345553
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.04 E-value=2.2 Score=47.88 Aligned_cols=164 Identities=13% Similarity=0.178 Sum_probs=85.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh------------hhhhccc--c
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 397 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~------------k~~fA~~--~ 397 (591)
.||-|+|+|..|.+||..++.+ |. +++++|..- +..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 3799999999999999998753 64 678888731 110011100 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCCC
Q 007724 398 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 474 (591)
Q Consensus 398 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraifAsGSP 474 (591)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +.+.-+.. .|+++.+ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578888876 78877 5544432 3555666666555545666544322 22 33333322 4455444 58
Q ss_pred CCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCC
Q 007724 475 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 540 (591)
Q Consensus 475 F~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~ 540 (591)
|.|+.+. | .+.+++....+++.+.. ++.+.+.+...-.--+...|.
T Consensus 140 ~nP~~~~---------------~----Lvevv~g~~t~~e~~~~-~~~~~~~lG~~~v~~~k~~~g 185 (495)
T PRK07531 140 YNPVYLL---------------P----LVELVGGGKTSPETIRR-AKEILREIGMKPVHIAKEIDA 185 (495)
T ss_pred CCCcccC---------------c----eEEEcCCCCCCHHHHHH-HHHHHHHcCCEEEeecCCCcc
Confidence 8877422 2 22344445556665544 555555544333333334443
No 69
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.99 E-value=0.83 Score=48.80 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=68.1
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhh-ccccCCCCCHHHH
Q 007724 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDA 406 (591)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~f-A~~~~~~~~L~e~ 406 (591)
++-.||+|+|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+....+ -+...+..+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 45569999999 9999999987752 243 3689999983 21 11111233211110 0111111234678
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 407 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
++. .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 887 8887755544322 4568899999999999999999999
No 70
>PLN02928 oxidoreductase family protein
Probab=91.88 E-value=1.4 Score=47.35 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=86.2
Q ss_pred CchhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 007724 308 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (591)
Q Consensus 308 QGTaaV~LAgll~A~r~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~l 371 (591)
+.+|--+++.+|+.+|. .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566667777776663 24579999999999999999999998643 64 6778
Q ss_pred EcCCCcccCCCcCCCchhh----hhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 372 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 372 vD~~GLv~~~r~~~l~~~k----~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-. ....++|+++.+..|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88741 000000000 00 0111111134689999987 8999854 2235799999999995 566777
Q ss_pred EcCCCCCCCCCCHHHHhc--ccCCcEEEe
Q 007724 444 ALSNPTSQSECTAEEAYT--WSKGRAIFA 470 (591)
Q Consensus 444 aLSNPt~~aEct~edA~~--wt~GraifA 470 (591)
=.|. .++--|+|+- -..|+.-.|
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 6665 4444444432 135665444
No 71
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.80 E-value=0.47 Score=49.41 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 299 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 299 ~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+..=+|-| -.|++.+++..+..+++++++|+|||-+|-+|+..+.. .|. ++|+++++.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 35566777 45677888877778889999999998666666555443 365 679999874
No 72
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.78 E-value=1.3 Score=48.49 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=102.5
Q ss_pred CCCeeeccCC---CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 298 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
..+.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3455555322 1234457899999999999999999999999999999999988643 75 5778886
Q ss_pred CCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEe---cc-----CCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 007724 375 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG---SS-----GVGRTFTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 375 ~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S-----~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (591)
.. .. . . ......+|.|+++. .|+++= ++ ...++|+++.+..|. +..++.=.|
T Consensus 148 ~~------~~-~-~-------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 PR------QE-A-E-------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred cc------cc-c-c-------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 31 00 0 0 01123579898886 787761 11 134799999999996 567877666
Q ss_pred CCCCCCCCCHHHHhcc--cCCcEEEecCCCC--CcceeCCeeeCcCCccccccchhhhHHHHHhC
Q 007724 447 NPTSQSECTAEEAYTW--SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISG 507 (591)
Q Consensus 447 NPt~~aEct~edA~~w--t~GraifAsGSPF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~ 507 (591)
. -++--++|+.. ..|+...|.=-=| +|. .+.... ..|+.+-|=++-....++
T Consensus 208 R----G~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 208 R----GAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGK 263 (381)
T ss_pred C----CcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHH
Confidence 5 44444444421 2454332211111 111 121111 137888887775555544
No 73
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.57 E-value=1 Score=51.28 Aligned_cols=162 Identities=22% Similarity=0.228 Sum_probs=108.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc--cCCCcCCCchhhhhhccccCCCCCHHHHh
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~r~~~l~~~k~~fA~~~~~~~~L~e~V 407 (591)
.+--++|+|.|..|+|||.-++. .|+ ++.||+++-+- |++|..+|-+--.+|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 56689999999999999997765 387 58899988776 466655676666666643 1222133555
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007724 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~ 485 (591)
+. .+++..+|-|+ +-|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 43 47788888765 445566655420
Q ss_pred CcCCccccccchhhhHHHHHhCC-ccc--CHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007724 486 VPGQANNAYIFPGFGLGLVISGA-IRV--HDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 562 (591)
Q Consensus 486 ~p~Q~NN~yiFPGlglG~~~s~a-~~I--td~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 562 (591)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++.+..+-.||.-.. .+ ++...++++.|.+.
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 0025778899999999993 333 22233335666666677766666888887663 32 26777889999888
Q ss_pred CC
Q 007724 563 GV 564 (591)
Q Consensus 563 G~ 564 (591)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 84
No 74
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.56 E-value=0.39 Score=50.18 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.|++.+++..+..+++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 4567777765557888999999999999988877754 365 789999874
No 75
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=91.54 E-value=1.6 Score=41.46 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhh
Q 007724 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (591)
Q Consensus 312 aV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k 390 (591)
-.+..|++.-++..|.+++.++++++|.+. .|--+|.+|. + .| -.+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~g-------atV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DG-------ATVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CC-------CEEEEeCCCC--------------
Confidence 357788899999999999999999999864 4444444443 3 35 3566676531
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 391 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
++|.+.+++ .|++|-..+.++.|+.++|+
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 267788987 99999999999999999987
No 76
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.52 E-value=0.73 Score=48.95 Aligned_cols=104 Identities=20% Similarity=0.336 Sum_probs=64.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc---cCCCCCHHHHh
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAV 407 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~---~~~~~~L~e~V 407 (591)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...++.-++.+. ..+... -....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999997653 365 23999997532211111012111 111111 1112456 567
Q ss_pred cccCCcEEEeccCCCCCC-------------------CHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 408 KVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~g~F-------------------t~evv~~Ma~~~erPIIFaLSNPt 449 (591)
+. .|++|=+.+.++.- -.++++.|.+++..-+++--|||.
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~ 131 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL 131 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 65 89998655554321 247788888899877999999998
No 77
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.47 E-value=0.79 Score=48.51 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=74.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc---CCCCCHHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~---~~~~~L~e~ 406 (591)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 44699999999999999987764 264 25999997521111110012221 1111100 1124565 6
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 007724 407 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraifA 470 (591)
++. .|++|=+.+.+.. .=+++.+.|.+++..-+++=.|||.. .....+.++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD---CMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH---HHHHHHHHhhCCCcccEEE
Confidence 665 8988866655431 23488899999999998888899982 23444555542 023666
Q ss_pred cCC
Q 007724 471 SGS 473 (591)
Q Consensus 471 sGS 473 (591)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 663
No 78
>PRK08223 hypothetical protein; Validated
Probab=91.26 E-value=0.37 Score=50.86 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007724 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (591)
Q Consensus 290 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i 369 (591)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 5566777666555543322 568899999999999999999988875 87 789
Q ss_pred EEEcCCC
Q 007724 370 CLVDSKG 376 (591)
Q Consensus 370 ~lvD~~G 376 (591)
.++|.+=
T Consensus 55 ~lvD~D~ 61 (287)
T PRK08223 55 TIADFDV 61 (287)
T ss_pred EEEeCCC
Confidence 9999873
No 79
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.12 E-value=0.92 Score=48.32 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=68.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc--ccCCCcCCCchhhhhhccccCCCCCHHHHhcc
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--v~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (591)
||.|.|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+.++.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532223347999998641 11111112443322332211111356788887
Q ss_pred cCCcEEEeccCC---CCC-----------CCHHHHHHHHcCC-CCcEEEEcCCCC
Q 007724 410 IKPTILIGSSGV---GRT-----------FTKEVIEAMASFN-EKPLILALSNPT 449 (591)
Q Consensus 410 vkPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (591)
.|++|=+.+. +|- .-+++++.|++++ +.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 8888744444 332 1256788888894 999999999998
No 80
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.05 E-value=0.5 Score=50.02 Aligned_cols=126 Identities=14% Similarity=0.260 Sum_probs=75.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCCCCCHHHHhcc
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 409 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~~~~L~e~V~~ 409 (591)
..||.|+|||..|..+|-+|+. .|+ .+.|.|+|.+-=..++-.-+|.+.. +|-+. .-...+. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 366 3679999974111111111132222 22111 0011344 45665
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 007724 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 473 (591)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraifAsGS 473 (591)
.|++|=+.+.+ |- .=+++++.|.+++...+|+-.|||. +....-+++++ .-+=+|.+|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 89988665553 21 1156788888899999999999998 33444555554 2223555654
No 81
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.95 E-value=0.46 Score=51.53 Aligned_cols=102 Identities=22% Similarity=0.266 Sum_probs=63.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCC-c-------CCCchhhhhhccc--
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 396 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r-~-------~~l~~~k~~fA~~-- 396 (591)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999998764 76 78999998732 2110 0 0111112111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 007724 397 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (591)
Q Consensus 397 ---~~---------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (591)
.+ .. .++.+.++. .|++|.++... =+.-.|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 00 01 135556654 78888766532 25556677777777888876
No 82
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=90.91 E-value=1.6 Score=43.88 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhC---------CCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCC
Q 007724 312 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 381 (591)
Q Consensus 312 aV~LAgll~A~r~~g---------~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~ 381 (591)
-+|-.|++.=++..+ .+++.++++++|-+ ..|.-+|.||.. .| -.++++|++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 345555566666554 48999999999986 467777777754 24 468899999988766
Q ss_pred CcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 007724 382 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 431 (591)
Q Consensus 382 r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~ 431 (591)
+...+.+.+.+. .....+|.|.+++ +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 543332111100 0111248898987 9999999999998 8999997
No 83
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.82 E-value=0.55 Score=50.29 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 478899999999999999999999875 76 7999999973
No 84
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.65 E-value=0.6 Score=51.85 Aligned_cols=130 Identities=17% Similarity=0.271 Sum_probs=76.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCC-----CCCHH
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~-~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~-----~~~L~ 404 (591)
.||+|+||||+ -+-.|+..+.+. ..++ -+.|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 38999999996 554555555432 2342 37899999863 3321122222222221 112 25788
Q ss_pred HHhcccCCcEEE---------------------ec-----cCCCCCC--------CHHHHHHHHcCCCCcEEEEcCCCCC
Q 007724 405 DAVKVIKPTILI---------------------GS-----SGVGRTF--------TKEVIEAMASFNEKPLILALSNPTS 450 (591)
Q Consensus 405 e~V~~vkPtvLI---------------------G~-----S~~~g~F--------t~evv~~Ma~~~erPIIFaLSNPt~ 450 (591)
||++. +|.+| |+ .|.||.| -.++++.|.+.|...+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99987 77776 22 1334433 257888899999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEecCCCCC
Q 007724 451 QSECTAEEAYTWSKGRAIFASGSPFD 476 (591)
Q Consensus 451 ~aEct~edA~~wt~GraifAsGSPF~ 476 (591)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322112344566555555554
No 85
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.64 E-value=2 Score=44.89 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777764
No 86
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.52 E-value=0.45 Score=51.30 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|++.||+++|+|..|.-||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 357889999999999999999999764 86 789999986
No 87
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.24 E-value=0.68 Score=47.77 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=53.3
Q ss_pred HHHHHHHHH-hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhc
Q 007724 316 AGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (591)
Q Consensus 316 Agll~A~r~-~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA 394 (591)
.|++++++. .+..+++.+++++|||.+|-.++..+.. .|+ .+++++++. .++ .......+.
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~~ 168 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLFG 168 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 456777764 5678999999999999888888777763 364 679999884 111 222222221
Q ss_pred ccc-CCC-CCHHHHhcccCCcEEEeccCCC
Q 007724 395 HEH-EPV-NNLLDAVKVIKPTILIGSSGVG 422 (591)
Q Consensus 395 ~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 422 (591)
... -.. .++.+.+. +.|++|-++..+
T Consensus 169 ~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 169 ALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hccceeecccchhccc--cCCEEEECCcCC
Confidence 110 011 12334444 389999887654
No 88
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.17 E-value=1.2 Score=47.18 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAGsA-g~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.-++..+.++++++++++|.|.- |.-+|.+|.. .|. .+.+++++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC--------------
Confidence 45677888999999999999999999999988 9999998864 243 45555432
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ .|++|-..+.++.|+.++++
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999998776
No 89
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.97 E-value=0.55 Score=42.93 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=31.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcc
Confidence 478999999999999999999875 87 8999999973
No 90
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.95 E-value=1.9 Score=45.96 Aligned_cols=92 Identities=14% Similarity=0.279 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..|.+++.++|+|+|.| ..|..+|.+|... | -.+++++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356778888889999999999999999996 9999999999753 5 356777653 0
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (591)
.++.|++++ .|++|=..+.++.+++++++ +.-||.=.|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168889987 89999988888888888754 555666666
No 91
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=89.85 E-value=5.9 Score=43.66 Aligned_cols=95 Identities=25% Similarity=0.417 Sum_probs=57.0
Q ss_pred eeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHH---------HHHHhh-CCCeeeeeecCCCccHHHHHH
Q 007724 225 CLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMS---------AVKQNY-GEKVLIQFEDFANHNAFELLA 294 (591)
Q Consensus 225 ~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~---------av~~~f-Gp~~lIqfEDf~~~~Af~lL~ 294 (591)
.+|.+.+.-..=+++.+||-+. +||+.++.+++- .+.+.+ |.+..+-.||+....+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~-- 91 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKI-- 91 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHH--
Confidence 4444444444556777788652 566666666542 355566 5677888888887777765
Q ss_pred HHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEE-eCcChHHHHHHHHHHH
Q 007724 295 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELIAL 352 (591)
Q Consensus 295 ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~-~GAGsAg~GIA~ll~~ 352 (591)
| .++.-++.| +..|+ .+++. .|||..|+++|-....
T Consensus 92 r-----------------~al~~~l~A-~~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 92 N-----------------NVLGQALLA-KRMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred H-----------------HHHHHHHHH-HHcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 1 123333333 33343 35666 6999988888775543
No 92
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.76 E-value=1.2 Score=42.96 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=73.4
Q ss_pred HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCC
Q 007724 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (591)
Q Consensus 322 ~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~ 401 (591)
.+..+..|.++++.|+|.|..|.-||+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567789999999999999999999998743 64 7888888521 111 1111111235
Q ss_pred CHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc-c-cCCcEE
Q 007724 402 NLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAI 468 (591)
Q Consensus 402 ~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~-w-t~Grai 468 (591)
+|.|+++. .|+++=. ....+.|+++.++.|. +.-++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 8888743 1224899999999996 5567776655 4444444432 1 356654
No 93
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.62 E-value=3.1 Score=45.54 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
..|=-+++.+++..|..|..|.+.++.|+|.|..|.-+|+.+... |+ ++..+|.. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 455567889999888889999999999999999999999988643 75 67778852 111 00
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEE---eccC-----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILI---GSSG-----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 460 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLI---G~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~ 460 (591)
......+|.|+++. .|+++ -++. .-++|+++.++.|. +..|++=.|. -+.-=|+|+
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~AL 217 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTAL 217 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHHH
Confidence 00123579999876 88887 1222 34789999999996 6678876655 445555554
No 94
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.62 E-value=5.6 Score=41.05 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 63 68889874
No 95
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.58 E-value=0.77 Score=48.34 Aligned_cols=47 Identities=38% Similarity=0.523 Sum_probs=38.4
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 317 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 317 gll~A~r~~g--~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
|+..+++..+ ...+++++|++|||-|+.+|+-.|.+. |. ++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 5677788766 456689999999999999998877663 75 78999988
No 96
>PRK15076 alpha-galactosidase; Provisional
Probab=89.50 E-value=0.86 Score=50.44 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=71.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcC---C-Cchhhhhhccc--cCCCCCHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---S-LQHFKKPWAHE--HEPVNNLLD 405 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~---~-l~~~k~~fA~~--~~~~~~L~e 405 (591)
.||.|+|||+.| .+..++..+....++ +-..++|+|.+- +|.+ . +.......... -.-..++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999985 343343333322233 235899999752 2210 0 01100011000 011247788
Q ss_pred HhcccCCcEEEeccCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEEcCCC
Q 007724 406 AVKVIKPTILIGSSGVGRTF-------------------------------------TKEVIEAMASFNEKPLILALSNP 448 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~F-------------------------------------t~evv~~Ma~~~erPIIFaLSNP 448 (591)
+++. .|++|=..+++|.- =.++++.|.++|...+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8876 77777554444211 14677888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecC-CCCC
Q 007724 449 TSQSECTAEEAYTWSKGRAIFASG-SPFD 476 (591)
Q Consensus 449 t~~aEct~edA~~wt~GraifAsG-SPF~ 476 (591)
.. +..+-++.+++ .-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 82 11222234533 3467776 5643
No 97
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.23 E-value=0.46 Score=50.92 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
.+|+..||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 568899999999999999999988764 87 7899999963
No 98
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.23 E-value=1.2 Score=47.07 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
=.-+|-.|++.=++..+.++++.+++++|-+ .-|--+|.++... | ..+..++++
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-------------
Confidence 3466778888889999999999999999999 8888888877542 4 346666542
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.++. .|++|+.-+.++.+|+++|+
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1368889986 99999999999999999984
No 99
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.23 E-value=0.76 Score=47.31 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+||.|+|+|..|.+||..+... | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988653 5 358888874
No 100
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.07 E-value=1.7 Score=45.99 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
=.-+|-.|++..++..+.+|++.+++++|.+. -|--+|.+|.. .| -.+.+++++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc-------------
Confidence 34678889999999999999999999999998 99999998864 24 246666642
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ .|++|-..|.++.++.++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257788876 99999999999999999876
No 101
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.00 E-value=0.98 Score=46.89 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=70.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc----c-----CCCCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----H-----EPVNN 402 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~----~-----~~~~~ 402 (591)
.||.|+|||..|.++|..++. .|+ . .++|+|.+ .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 2 79999983 111 11111111111 0 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC---
Q 007724 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 465 (591)
Q Consensus 403 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G--- 465 (591)
. ++++. .|++|=+.+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 45665 88888333322 2 12356777788889999888889998 12222334444 3
Q ss_pred cEEEecCCCC
Q 007724 466 RAIFASGSPF 475 (591)
Q Consensus 466 raifAsGSPF 475 (591)
+-+|++|.-.
T Consensus 138 ~~viG~gt~l 147 (307)
T PRK06223 138 NRVIGMAGVL 147 (307)
T ss_pred ccEEEeCCCc
Confidence 4588887543
No 102
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=88.97 E-value=0.91 Score=49.95 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=70.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc------CCCCCHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 406 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~------~~~~~L~e~ 406 (591)
||.|+|||+.|.+.+- +..+..... .+-.+++|+|.+- ++-+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 111111101 1235899999752 21111111111111111 113578899
Q ss_pred hcccCCcEEEeccCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEEcCCCCC
Q 007724 407 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPTS 450 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~erPIIFaLSNPt~ 450 (591)
++. .|++|=.-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 886 78777443321 2221 26777777888999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEecC-CCC
Q 007724 451 QSECTAEEAYTWSKGRAIFASG-SPF 475 (591)
Q Consensus 451 ~aEct~edA~~wt~GraifAsG-SPF 475 (591)
..+| +-+++.++ .=++.+| +|+
T Consensus 149 -~i~t-~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 149 -AELT-WALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred -HHHH-HHHHHhCC-CCEEEECCcHH
Confidence 2222 23346665 4466666 443
No 103
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.70 E-value=2.7 Score=45.04 Aligned_cols=110 Identities=23% Similarity=0.198 Sum_probs=74.6
Q ss_pred CeeeccCC---CchhHHHHHHHHHHHH------------------HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhc
Q 007724 300 HLVFNDDI---QGTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 358 (591)
Q Consensus 300 ~~~FNDDi---QGTaaV~LAgll~A~r------------------~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~ 358 (591)
+.|+|-.- +..|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 90 i~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af----- 164 (324)
T COG0111 90 ILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF----- 164 (324)
T ss_pred CEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----
Confidence 44454443 2334456888888877 567788999999999999999999988664
Q ss_pred CCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHH
Q 007724 359 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMA 434 (591)
Q Consensus 359 G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma 434 (591)
|+ ++..+|+. ..+. ... ........+|.+.++. .|+|.-. ...-|.++++-+..|.
T Consensus 165 gm-------~v~~~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 165 GM-------KVIGYDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred CC-------eEEEECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 65 67788873 1110 000 0112234679999987 8988854 2334789999999994
No 104
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.56 E-value=1 Score=47.46 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=70.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc-c--cCCCCCHHHHhc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVK 408 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~-~--~~~~~~L~e~V~ 408 (591)
.||.|+|+|..|.++|-.++.. |+ + ++.++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 3899999999999999987642 54 2 599999832222111000110 000000 0 011246766 55
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEecC
Q 007724 409 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 472 (591)
Q Consensus 409 ~vkPtvLIG~S~~~---g-~------Ft----~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraifAsG 472 (591)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .....-++++++ -+=+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78877444432 2 1 23 44666688889999999999998 344445555531 12266666
Q ss_pred C
Q 007724 473 S 473 (591)
Q Consensus 473 S 473 (591)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 3
No 105
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.50 E-value=17 Score=40.53 Aligned_cols=186 Identities=23% Similarity=0.252 Sum_probs=124.3
Q ss_pred CCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHH---HHHHHcCC-----Ceee----------ccCCCchhHH
Q 007724 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGTT-----HLVF----------NDDIQGTASV 313 (591)
Q Consensus 252 R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~~-----~~~F----------NDDiQGTaaV 313 (591)
..+..|-.+|...|++++.+.-||+.-|-=+|++.. ... +.+.|+.- .++| .+----||-=
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~-~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTN-PQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCC-HHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 356778889999999999999999999999999853 222 45666531 2222 1222235443
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhh
Q 007724 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (591)
Q Consensus 314 ~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~f 393 (591)
+.-+.-.|++..|.+|++.||.|-|-|.+|.=.|+.+.+. |. |=+-+=|++|-|++.. .|+..+...
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~ 256 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLE 256 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHH
Confidence 4444458888899889999999999999998888877642 63 5567778999888763 355333221
Q ss_pred ccc----------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 007724 394 AHE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (591)
Q Consensus 394 A~~----------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 461 (591)
.++ .+...+ |.+-.+..||||=+.. ++..|++-.+.+.+. +|.=-+| |++ + .+++.+.
T Consensus 257 ~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t-~--eA~~i~~ 325 (411)
T COG0334 257 LKERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT-P--EADEILL 325 (411)
T ss_pred HhhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC-H--HHHHHHH
Confidence 111 111112 3344567899996655 668999988888532 8888888 763 3 3444444
No 106
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.26 E-value=0.55 Score=46.62 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=66.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc-C-CCCCHH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E-PVNNLL 404 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~-~-~~~~L~ 404 (591)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ .. .+|..+ ..+..+- . ....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999764 76 78999999732 22 235442 2121111 0 112466
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-EcCCCCCCCC
Q 007724 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSE 453 (591)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~aE 453 (591)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~ 126 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAM 126 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHH
Confidence 77777888865432 233467666655432 233554 5567665444
No 107
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.03 E-value=3.1 Score=44.13 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc
Q 007724 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (591)
Q Consensus 317 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~ 396 (591)
|.+++...... ...+++|+|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999998888877543 244 678888773 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 007724 397 ----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (591)
Q Consensus 397 ----~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 458 (591)
.....++.++++. .|++|-+++.. .+|+.+.++ +.-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678889975 99999765432 356666654 222444444322 256777654
No 108
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.65 E-value=0.57 Score=44.26 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=50.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhh--hhccc---cCC---CCCHH
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 404 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~--~fA~~---~~~---~~~L~ 404 (591)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .+..... .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999988753 5 56777776531111 1111111 11110 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 007724 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (591)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (591)
++++. .|++| +.. |-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 67665 333 2245789999998744
No 109
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=87.43 E-value=0.4 Score=53.39 Aligned_cols=130 Identities=18% Similarity=0.350 Sum_probs=84.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCCC-----CCH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPV-----NNL 403 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~~-----~~L 403 (591)
+..||+|+||||. .-.+++...+.+...++. ..|||+|-+ .+|.+.....-+.+.+. ..+. .++
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 4579999999998 567888887777666653 789999974 44422111112222222 1222 589
Q ss_pred HHHhcccCCcEEE---------------------e-----ccCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 007724 404 LDAVKVIKPTILI---------------------G-----SSGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 404 ~e~V~~vkPtvLI---------------------G-----~S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.||++. +|.+| | +.++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999987 66666 1 133444443 48899999999999999999999
Q ss_pred CCCCCCHHHHhcccCC-cEEEecCCC
Q 007724 450 SQSECTAEEAYTWSKG-RAIFASGSP 474 (591)
Q Consensus 450 ~~aEct~edA~~wt~G-raifAsGSP 474 (591)
+++|- -.++|+.. |.|=-+=+|
T Consensus 150 --~~vTe-Av~r~~~~~K~VGlCh~~ 172 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIVGLCHGP 172 (442)
T ss_pred --HHHHH-HHHHhCCCCcEEeeCCch
Confidence 77774 34555554 554434333
No 110
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=87.41 E-value=0.88 Score=45.15 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=68.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCC-----CCCHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLDA 406 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~-----~~~L~e~ 406 (591)
||+|+||||+-. ..++...+.+...++ .+.|+|+|.+ .+|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999854 455665555444553 4689999986 23311111222333332 112 2589999
Q ss_pred hcccCCcEEE---------------------eccC-------CCCCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 007724 407 VKVIKPTILI---------------------GSSG-------VGRTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (591)
Q Consensus 407 V~~vkPtvLI---------------------G~S~-------~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (591)
++. .|.+| |+-+ .||.|. .|+.+.|.+.|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 88888 3322 334432 58899999999999999999998
Q ss_pred CCCCC
Q 007724 451 QSECT 455 (591)
Q Consensus 451 ~aEct 455 (591)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 111
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.29 E-value=3.9 Score=43.63 Aligned_cols=121 Identities=20% Similarity=0.214 Sum_probs=71.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc--cCCCcCCCchhhhhhccccCCCCCHHHHhcc
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (591)
||+|.|| |..|..+|..|+.. |+--.+....+.++|.+.-. ..+..-++.+..-++..+.....++.++++.
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC
Confidence 6999999 99999999987642 44100112379999985411 1111001222111221111112578888886
Q ss_pred cCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 007724 410 IKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (591)
Q Consensus 410 vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wt 463 (591)
+|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++
T Consensus 79 --aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~ 142 (325)
T cd01336 79 --VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYA 142 (325)
T ss_pred --CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 9998855555421 23 56777888885 689999999997 33444455544
No 112
>PRK08374 homoserine dehydrogenase; Provisional
Probab=87.20 E-value=3.1 Score=44.54 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=84.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc---hhhhhhcccc------C-
Q 007724 332 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HFKKPWAHEH------E- 398 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~---~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~---~~k~~fA~~~------~- 398 (591)
-+|.++|-|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+.-++. .+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999977 3333345321 224456999888765531122 2222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHH---hcccCCcEEEec----
Q 007724 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA---YTWSKGRAIFAS---- 471 (591)
Q Consensus 399 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA---~~wt~GraifAs---- 471 (591)
..-++.|.++...+||+|-+++.. ..-+-+.+.+. +.+++|.+=--|- ++ ..++. -+-.+.+..|.+
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVtanK~~l--a~-~~~el~~la~~~~~~~~~ea~v~~ 152 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVTSNKPPI--AF-HYDELLDLANERNLPYLFEATVMA 152 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEECCHHHH--Hh-CHHHHHHHHHHcCCeEEEeccccc
Confidence 012688888878899999998632 33333334444 4678886322233 21 22222 222333455433
Q ss_pred CCCCCcceeCCeeeCcCCccccccchhhhHHH
Q 007724 472 GSPFDPFEYNGKVFVPGQANNAYIFPGFGLGL 503 (591)
Q Consensus 472 GSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~ 503 (591)
|-|.=..- +... -+|+..=|=||.-|.
T Consensus 153 GiPii~~l---~~~l--~g~~i~~i~GIlnGT 179 (336)
T PRK08374 153 GTPIIGLL---RENL--LGDTVKRIEAVVNAT 179 (336)
T ss_pred cCCchHHH---Hhhc--cccceEEEEEEEech
Confidence 54432211 1112 245666677777665
No 113
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.08 E-value=2.5 Score=42.00 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=59.0
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhc---cc-c----CCCCCH
Q 007724 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 403 (591)
Q Consensus 333 riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA---~~-~----~~~~~L 403 (591)
||.|+| +|..|..+|..+.+. | .+++++|+. .+ .+......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~---~~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE---KAEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH---HHHHHHHHHHhhccccCCCceEEEeCh
Confidence 699997 899999999988652 4 467777663 11 1222111111 00 0 011356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 007724 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (591)
.++++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 778775 78766 44433 3457888888654344799999999854
No 114
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=87.05 E-value=3 Score=38.06 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=48.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
||+++|+ |-.|-.|++.+.+. .|+ +=.+.+|++.=-..+. ++.+.-.......+-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999988762 344 4467788876111111 1111100000001112467777776
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (591)
+||+|=.|.+. -..+.++...++ ..|+|..
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 77777666432 233444444443 4555553
No 115
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.04 E-value=2 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=62.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc-C
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 411 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v-k 411 (591)
+|-|+|.|..|..+|..+... | .++.++|+. . +..+..+.. ......++.|.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~---~~~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----Q---DAVKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----H---HHHHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988652 5 356667763 1 112222211 112234666666543 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHH
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 457 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~aEct~e 457 (591)
||++| ++...+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi-~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVW-VMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEE-EEcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 88887 444455 889999888765 4568999999865 444444
No 116
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.72 E-value=2.6 Score=44.54 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.-++..|.++++++++++|.+ ..|.-+|.||.. .| ..+.+++++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 456778888999999999999999999975 578888888854 24 346666542
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
..+|.+.+++ +|++|...+.++.|+.++|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888987 99999999999999999996
No 117
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.62 E-value=0.75 Score=46.05 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|+..||+++|+|..|..||+.|+.+ |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999764 87 789999987
No 118
>PRK14851 hypothetical protein; Provisional
Probab=86.59 E-value=2.4 Score=49.74 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCc-------CCCchhhhhhccc---
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 396 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~-------~~l~~~k~~fA~~--- 396 (591)
++|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|-+=+-.++-. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578899999999999999999988765 87 79999998733222110 1122222222211
Q ss_pred --c---------CCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC----------CCCCCCC
Q 007724 397 --H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS----------NPTSQSE 453 (591)
Q Consensus 397 --~---------~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS----------NPt~~aE 453 (591)
. ..+ .++.+.++. .|++|-...-...-++..|...|..+..|+|++-. +|. .
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~---~ 182 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ---G 182 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---C
Confidence 0 111 246666765 89988544321111344677778888999999754 676 5
Q ss_pred CCHHHHhcccCC
Q 007724 454 CTAEEAYTWSKG 465 (591)
Q Consensus 454 ct~edA~~wt~G 465 (591)
...++.|.+.++
T Consensus 183 ~~~~~~~~~~~~ 194 (679)
T PRK14851 183 MGFDDYFNIGGK 194 (679)
T ss_pred CCHhHhccCCCC
Confidence 778888888777
No 119
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.38 E-value=2.3 Score=45.01 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-+|++.=++..+.+++.+++|++|.+ ..|.-+|.||... |. .+ .-.+..++++
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~-------------- 194 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSR-------------- 194 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCC--------------
Confidence 466778889999999999999999999986 5788888877531 10 00 1245555542
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
..+|.+.++. +|++|+..+.++.|++++|+
T Consensus 195 ----------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 ----------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358889987 99999999999999999994
No 120
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=86.31 E-value=1.9 Score=46.99 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 567899999999999999999999864 87 789999986
No 121
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.22 E-value=4.2 Score=43.33 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=66.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccC--CCCCHHHHhcc
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~--~~~~L~e~V~~ 409 (591)
||.|+|| |..|..+|-+|+. .|+ -+.+.|+|.+ + .++-.-+|.+.. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 3689999998 3 222211244432 1111110 11346677876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.|++|=+.+.+ |- .-+++++.+.+++...+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 88887555543 32 1246777788899999999999998
No 122
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.21 E-value=1.7 Score=45.38 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.|++.+++..|.+. +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677777666653 4699999999999888877754 365 679999874
No 123
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.10 E-value=1.8 Score=43.08 Aligned_cols=118 Identities=12% Similarity=0.177 Sum_probs=68.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcc
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (591)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+..|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999998887642 310 11346666542 0 111333333331 1123567788875
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC-CcEEEecC
Q 007724 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 472 (591)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~-GraifAsG 472 (591)
.|++| ++..+. .-+++++.++.+-...+|+.++.-.+ .++.-+|.+ +..++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC
Confidence 77776 555454 45889998886544457777776653 334444443 34455565
No 124
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.99 E-value=6.2 Score=42.13 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=97.5
Q ss_pred CCCeeeccCC---CchhHHHHHHHHHHHHH-------------------------hCCCcccceEEEeCcChHHHHHHHH
Q 007724 298 TTHLVFNDDI---QGTASVVLAGVVAALKL-------------------------IGGTLAEHRFLFLGAGEAGTGIAEL 349 (591)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~A~r~-------------------------~g~~l~d~riv~~GAGsAg~GIA~l 349 (591)
..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 4566666321 22444467777776654 2456899999999999999999998
Q ss_pred HHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCC
Q 007724 350 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTF 425 (591)
Q Consensus 350 l~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~F 425 (591)
+... |+ +++.+|+.. + . .. ...+. ....+|.|+++. .|+++=.- ..-++|
T Consensus 169 l~~~-----G~-------~V~~~d~~~-----~-~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 AKGF-----GM-------RILYYSRTR-----K-P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred HHHC-----CC-------EEEEECCCC-----C-h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 8643 64 577888741 1 1 11 11111 123479999886 88887432 123689
Q ss_pred CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhH
Q 007724 426 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGL 501 (591)
Q Consensus 426 t~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlgl 501 (591)
+++.+..|. +..++.=.|.=.---|-.-.+|+ ..|+.-.|.=-=|++=-..+.. -=+..|+.+-|=+|-
T Consensus 223 ~~~~~~~mk---~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gAaLDV~~~EP~~~~p--L~~~~nvilTPHia~ 291 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTARGKVVDTKALVKAL--KEGWIAGAGLDVFEEEPYYNEE--LFSLKNVVLAPHIGS 291 (333)
T ss_pred CHHHHhcCC---CCeEEEECcCchhcCHHHHHHHH--HcCCeEEEEeccCCCCCCCCch--hhcCCCEEECCcCCc
Confidence 999999985 56677766653322222222333 4566544321111100000111 123468899998874
No 125
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.88 E-value=3.2 Score=43.91 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
-.-+|-+|++.=++..+.+++++++|++|-+ ..|.-+|.+|.. .|. .+.+++++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~------------- 190 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF------------- 190 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 3466788888889999999999999999998 889999988854 242 34444432
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ .|++|-..+.++.|+.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 -----------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -----------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1246778886 99999999999999999997
No 126
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.77 E-value=2.2 Score=45.94 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467889999999999999999988764 87 789999997
No 127
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.43 E-value=1 Score=45.18 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=61.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc---CCCCCH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNL 403 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~---~~~~~L 403 (591)
.+|++.||+|+|+|..|.-||+.|+.+ |+ ++|.++|.+= |.. .+|..+- -|..+. .....+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~---sNL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VEL---SNLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcC---ccccccc-ccChhhCCChHHHHH
Confidence 468899999999999999999999764 86 8999999972 222 1343221 121111 111346
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.+.++.+.|++=|=.. ..-++++-+...-+.. .=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~--~~~i~~~~~~~~~~~~-DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAY--NERLDAENAEELIAGY-DLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEe--cceeCHHHHHHHHhCC-CEEEEcCCCHH
Confidence 6777777777544222 2234554444332211 22444666665
No 128
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.35 E-value=3 Score=42.17 Aligned_cols=120 Identities=11% Similarity=0.160 Sum_probs=69.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999887643 43 125678887631 1122222222 11122466677754
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcce
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFE 479 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~ 479 (591)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=++..-|..|..
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~ 122 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPAL 122 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHH
Confidence 77766 44433 45788888887654 358899999773 344445544222222345555543
No 129
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.17 E-value=4.9 Score=42.53 Aligned_cols=83 Identities=23% Similarity=0.364 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-+|++.=++..|.+++.++++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------------- 191 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------------- 191 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC--------------
Confidence 45677788888899999999999999999 99999999999753 53 34444221
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
..+|.+.+++ .|++|-.-+.++.+++++++
T Consensus 192 ----------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 ----------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1268888987 99999999999999988754
No 130
>PRK07411 hypothetical protein; Validated
Probab=85.12 E-value=2.3 Score=46.47 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|++.||+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 568899999999999999999999875 87 799999987
No 131
>PLN02306 hydroxypyruvate reductase
Probab=84.95 E-value=7.3 Score=42.74 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=100.2
Q ss_pred cCCCeeeccCC---CchhHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcChHHHHHHHHHHH
Q 007724 297 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 297 r~~~~~FNDDi---QGTaaV~LAgll~A~r~~---------------------g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
+..+.+.|--- ..+|=-+++-+|+.+|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 45677777532 234444567777665431 345889999999999999999999864
Q ss_pred HHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc--------c--cCCCCCHHHHhcccCCcEEEec----
Q 007724 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 418 (591)
Q Consensus 353 ~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~--------~--~~~~~~L~e~V~~vkPtvLIG~---- 418 (591)
+| |+ +++.+|+..- +.+..+...+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS------TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc------hhhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 6888887421 001111011100 0 0112489999987 8998863
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEEEecCC-CC--CcceeCCeeeCcCCcccc
Q 007724 419 SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGS-PF--DPFEYNGKVFVPGQANNA 493 (591)
Q Consensus 419 S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w--t~GraifAsGS-PF--~pv~~~G~~~~p~Q~NN~ 493 (591)
....|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+.-.| |. =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~gA-aLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMFRV-GLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCeeEE-EEeCCCCCCC-Ccc---hHhhCCCE
Confidence 2334799999999996 455666555 355555544422 24554332 21 01 111 011 11245688
Q ss_pred ccchhhhH
Q 007724 494 YIFPGFGL 501 (591)
Q Consensus 494 yiFPGlgl 501 (591)
.+-|=+|-
T Consensus 316 ilTPHiag 323 (386)
T PLN02306 316 VVVPHIAS 323 (386)
T ss_pred EECCcccc
Confidence 88888773
No 132
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.63 E-value=5.2 Score=42.71 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=65.6
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc--cCCCcCCCchhhhhhccccCCCCCHHHHhc
Q 007724 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (591)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (591)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. .++..-+|.+...+|.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887654 254100011379999985322 111111244333233221111134557777
Q ss_pred ccCCcEEEeccCC---CCCCC------------HHHHHHHHcCC-CCcEEEEcCCCC
Q 007724 409 VIKPTILIGSSGV---GRTFT------------KEVIEAMASFN-EKPLILALSNPT 449 (591)
Q Consensus 409 ~vkPtvLIG~S~~---~g~Ft------------~evv~~Ma~~~-erPIIFaLSNPt 449 (591)
+ .|++|=+.+. +| .| +++.+.+.+++ +.-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 6 8988855444 33 23 45677778888 499999999998
No 133
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.63 E-value=1.1 Score=45.68 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=59.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc--c-CCCCCH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--H-EPVNNL 403 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~--~-~~~~~L 403 (591)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|..+ .-|... + .....+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL---SNLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc---cCcccc-eeeeHhhCCCcHHHHH
Confidence 468889999999999999999999764 87 79999999722 21 134321 111111 0 111245
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-EcCCCC
Q 007724 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPT 449 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt 449 (591)
.+.++...|++-|-.-. .-++++-+...-+ +--+|+ +.-||.
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~ 126 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVE 126 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHH
Confidence 56666667776654332 2345443333211 222444 555654
No 134
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.57 E-value=23 Score=36.40 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=59.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (591)
..||.|+|+|.-|..||+.+... |.- ...+++++|+. . .+.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 45899999999999999988643 410 11456766642 0 011222222221 1122466677764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhccc
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWS 463 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~aEct~edA~~wt 463 (591)
.|++| ++..+ -..+++++.+... .+..+|..+++-+ ++++.-+|.
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi-----~~~~l~~~~ 111 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV-----STHSIRNLL 111 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC-----CHHHHHHHc
Confidence 66655 44333 2355666666543 3456777776654 344444444
No 135
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.35 E-value=6.2 Score=41.67 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-+|++.=++..+.++++++++++|-+ ..|.-+|.||.. .| -.+.+++|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456788888889999999999999999975 578888888853 24 246666542
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 136
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.32 E-value=4.4 Score=42.91 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhh
Q 007724 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (591)
Q Consensus 312 aV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k 390 (591)
-+|-.|++.=++..+.+++++++|++|.+ ..|--+|.||.. .| ..+.+++|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 44667777788889999999999999975 578888888853 24 346666543
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 391 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 137
>PRK06436 glycerate dehydrogenase; Provisional
Probab=84.28 E-value=11 Score=40.10 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHH
Q 007724 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (591)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e 405 (591)
+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+... .+.. . ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~~~-----~~~~--------~--~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRSYV-----NDGI--------S--SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCCCc-----ccCc--------c--cccCCHHH
Confidence 35799999999999999999998664 32 64 6888887521 0101 0 01247889
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 406 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 406 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
+++. .|+++=. ...-++|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8876 8888732 1224689999999996 567888777644
No 138
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.21 E-value=1.8 Score=44.61 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=57.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhh-----hcc------ccCCCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WAH------EHEPVN 401 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~-----fA~------~~~~~~ 401 (591)
||.|+|+|..|..+|..|... | ..++++|+..-. ++..++. +.. ......
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQ-------AAEINADRENPRYLPGIKLPDNLRATT 63 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHH-------HHHHHHcCcccccCCCCcCCCCeEEeC
Confidence 799999999999999988653 4 357778774211 1111100 000 001124
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 007724 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (591)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (591)
++.++++. +|++| ++... ...+++++.+..+ .+.-+|+.++|-..
T Consensus 64 ~~~~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 64 DLAEALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CHHHHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 67777765 67766 33322 3578888887764 34568888887443
No 139
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=84.20 E-value=6 Score=42.18 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=65.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc--CCCCCHHHHhcc
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 409 (591)
||.|+|| |..|..+|-+|+. .|+ -+.+.|+|.+. ..+-.-+|.+... ..+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 254 26899999876 2221112444221 01100 011246678877
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.|++|=+.+.+ |- .=+++.+.+.+++..-||+-.|||.
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 88887555543 21 1145677778899999999999998
No 140
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.83 E-value=5.4 Score=41.50 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=56.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCCCCCHHHHhccc-
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 410 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~~~~L~e~V~~v- 410 (591)
||.|+|.|..|..+|..|... | .+++++|+.. . ..+ .++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~---~~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----E---AVE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----H---HHH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999988653 5 3577777741 1 111 22221 11235777887765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (591)
+||++|=+ -..+...+++++.+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~-v~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLM-VPAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEE-ecCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 37665532 2233356677665543 34667888887733
No 141
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.43 E-value=3.9 Score=43.46 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhh
Q 007724 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (591)
Q Consensus 312 aV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k 390 (591)
-+|-.|++.=++..+.+++++++|++|.+ ..|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 45666778888999999999999999986 5788888888643211 12 244444432
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 391 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
..+|.+.+++ .|++|+..+.++.|++++|+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358888987 99999999999999999995
No 142
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.33 E-value=1.1 Score=44.25 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 468899999999999999999999765 87 7899999973
No 143
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=83.30 E-value=0.4 Score=45.81 Aligned_cols=89 Identities=24% Similarity=0.380 Sum_probs=49.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC-------------CcccCCCcCCCchhhhhhcc
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 395 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-------------GLv~~~r~~~l~~~k~~fA~ 395 (591)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5568999999999999999988653 53 34444432 0101 00000000 00222
Q ss_pred c------cCCCCCHHHHhcccCCcEEEec-----cCCCCCCCHHHHHHHH
Q 007724 396 E------HEPVNNLLDAVKVIKPTILIGS-----SGVGRTFTKEVIEAMA 434 (591)
Q Consensus 396 ~------~~~~~~L~e~V~~vkPtvLIG~-----S~~~g~Ft~evv~~Ma 434 (591)
. ......|.+.++. .|++|+. ...|-+||++.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 1111368888876 7999974 3445689999999996
No 144
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.29 E-value=3.8 Score=43.50 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..+.++++++++|+| .|..|..+|.+|... |. .+++++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4566778888888899999999999999 999999999999752 53 45665432 11
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEV 429 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~ev 429 (591)
+|.|++++ .|++|-.-+.++.+++++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchhe
Confidence 36788876 899998888777777665
No 145
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=82.74 E-value=2.6 Score=43.89 Aligned_cols=118 Identities=19% Similarity=0.367 Sum_probs=68.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcC----CCchhhhhhccc--cCCCCCHHHHh
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHE--HEPVNNLLDAV 407 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~----~l~~~k~~fA~~--~~~~~~L~e~V 407 (591)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.. ++.+........ -....+. +++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAAPILGSDTKVTGTNDY-EDI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHh
Confidence 5799999999999987754 255 1 79999986 22110 011110000000 0011344 456
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCc---EEEe
Q 007724 408 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR---AIFA 470 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~Gr---aifA 470 (591)
+. .|++|=+.+.+ |- .-+++++.|.+++...+|+-.|||. ......+++++ |. -+|+
T Consensus 65 ~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rviG 138 (300)
T cd01339 65 AG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVIG 138 (300)
T ss_pred CC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEEE
Confidence 65 78888333322 20 1247888899999999999999998 23333444544 22 3677
Q ss_pred cCC
Q 007724 471 SGS 473 (591)
Q Consensus 471 sGS 473 (591)
+|+
T Consensus 139 lgt 141 (300)
T cd01339 139 MAG 141 (300)
T ss_pred ecc
Confidence 774
No 146
>PRK07574 formate dehydrogenase; Provisional
Probab=82.60 E-value=14 Score=40.65 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=73.9
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHH
Q 007724 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (591)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e 405 (591)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+...- . +..+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~-----~---~~~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP-----E---EVEQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc-----h---hhHhhc--CceecCCHHH
Confidence 3458999999999999999999988653 64 57888875320 0 000111 1112357999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc--ccCCcEEEecC
Q 007724 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASG 472 (591)
Q Consensus 406 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wt~GraifAsG 472 (591)
+++. .|+++=.- ..-++|+++.+..|. +..++.=.|. .++.-++|+. -..|+.-.|..
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9986 89887332 123689999999996 5667776665 4444444441 23566655544
No 147
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.52 E-value=1.8 Score=45.38 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=25.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 3799999999999999988753 5 347777763
No 148
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=82.52 E-value=6.3 Score=41.62 Aligned_cols=99 Identities=24% Similarity=0.368 Sum_probs=62.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc----cc--CC---CCC
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH--EP---VNN 402 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~----~~--~~---~~~ 402 (591)
||.|+|| |..|..+|..++. .|+ ...++++|++--+ +.+..++.++.+ .. .. ..+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 9999999998765 265 2479999984211 112222222111 00 01 124
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 403 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
. +.++. .|++|=+.+.+ | .+-+++++.|.+++...+|+-.+||.
T Consensus 67 ~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 67 L-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred H-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 3 45665 88887554432 2 23567788888899999999999997
No 149
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=82.52 E-value=7.7 Score=44.25 Aligned_cols=167 Identities=14% Similarity=0.208 Sum_probs=85.6
Q ss_pred hhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHHHHHHHcCCCeee--ccCCCchhHHH
Q 007724 237 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVF--NDDIQGTASVV 314 (591)
Q Consensus 237 e~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~F--NDDiQGTaaV~ 314 (591)
+.|.++-.++|+-|+-.. .++++.+. ++ .-.+|-+|.+-. + +|- .+..+| +.-|.|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~~ll~~l~----~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----PELMEKLA----AK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----HHHHHHHH----Hc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 445566777777775432 23333332 22 234566775531 0 111 122222 23455666665
Q ss_pred HHHHHHHHHHhC-----CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch-
Q 007724 315 LAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH- 388 (591)
Q Consensus 315 LAgll~A~r~~g-----~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~- 388 (591)
.|+-.-.-..+| ......|++|+|+|.+|+..+..+... |. ++.++|.+.-.. .+-..+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rl-e~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVK-EQVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHH-HHHHHcCCe
Confidence 554332222222 134568999999999999887766542 52 377777654210 00000000
Q ss_pred -----------hhhhhccccCC------CCCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHc
Q 007724 389 -----------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMAS 435 (591)
Q Consensus 389 -----------~k~~fA~~~~~------~~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~ 435 (591)
...-||+...+ ..-+.+.++. .|++|++.-++| +.|+++++.|..
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 00112221100 0114455554 999999983333 589999999974
No 150
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=82.51 E-value=2.3 Score=47.03 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=47.6
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC-CcccCCCcCCCchhhhhhcccc
Q 007724 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH 397 (591)
Q Consensus 319 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~r~~~l~~~k~~fA~~~ 397 (591)
+.++.-....|.+.|++++|-+.-..|+++.+.+ .|+... .+. .+.+ ... ..+... .-+.
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v~----~~~-~~~~~~~~-----~~~~~~-~~~~--- 359 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQIV----AAV-TTTGSPLL-----QKLPVE-TVVI--- 359 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEEE----EEE-eCCCCHHH-----HhCCcC-cEEe---
Confidence 3444444456778999999988888999998754 377321 111 1111 000 001110 0011
Q ss_pred CCCCCHHHHhcccCCcEEEeccC
Q 007724 398 EPVNNLLDAVKVIKPTILIGSSG 420 (591)
Q Consensus 398 ~~~~~L~e~V~~vkPtvLIG~S~ 420 (591)
.+...|++.++..+||++||-|-
T Consensus 360 ~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 360 GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CCHHHHHHHHhhcCCCEEEECcc
Confidence 22246788898899999998664
No 151
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.51 E-value=1.7 Score=44.36 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999764 86 799999997
No 152
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=82.47 E-value=6.5 Score=38.22 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
--+|-.|++.-++..+.++++.+++++|.+. -|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC--------------
Confidence 3567788889999999999999999999984 888888887642 42 34445442
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..++++.++.++|+
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1457777875 99999999999999999886
No 153
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.25 E-value=8.4 Score=41.05 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.-++..+.+++.+++|++|.+ ..|--+|.||.. .| ..+.+++|+
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC--------------
Confidence 456778888889999999999999999986 578888888753 24 346666553
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 194 ----------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ----------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 154
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=81.89 E-value=7.2 Score=41.73 Aligned_cols=122 Identities=17% Similarity=0.103 Sum_probs=70.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc--cCCCcCCCchhhhhhccccCCCCCHHHHhc
Q 007724 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (591)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (591)
-||.|+|| |..|..+|-.|+. .|+-.-+-...+.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 38999998 9999999987764 255110111279999985311 111111233322222221111134557777
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhccc
Q 007724 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 463 (591)
Q Consensus 409 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt~~aEct~edA~~wt 463 (591)
+ .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||- ....--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 6 89888454443 31 12457778888987 99999999997 33333444444
No 155
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=81.88 E-value=6.1 Score=42.15 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
-.-+|-+|++.=++..|.+++.+++|++|-+ ..|.-+|.||.. .| -.+.+++|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3456777788888999999999999999986 568888887753 24 356667553
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ .|++|-..|.++.|+.++|+
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 156
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.71 E-value=17 Score=41.28 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=29.0
Q ss_pred CcCCccccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007724 486 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 521 (591)
Q Consensus 486 ~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~ 521 (591)
.||..+|-..+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 478899999999998888888777678887777654
No 157
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.70 E-value=26 Score=35.96 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988643 64 68888853
No 158
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.68 E-value=1.9 Score=41.76 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999987
No 159
>PRK08291 ectoine utilization protein EutC; Validated
Probab=81.61 E-value=9 Score=40.68 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=64.8
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc
Q 007724 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (591)
Q Consensus 317 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~ 396 (591)
|++++..... -..++++|+|+|..|..++..+... .++ +++.++++. .+ +...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~---~a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA---KAEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH---HHHHHHHHHhhc
Confidence 4455544432 2347999999999987777766432 243 678888763 11 223333333211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHH
Q 007724 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEE 458 (591)
Q Consensus 397 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~ed 458 (591)
.....++.++++. .|++|-++.. .-+|+.+.++. ...|+.--|+-..+-|+.++-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~-----g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP-----GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC-----CceEEeeCCCCCCcccCCHHH
Confidence 1123678899975 8999866433 33566665542 122332224433456888765
No 160
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.61 E-value=3.3 Score=44.29 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=57.1
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC---C-----CCCCHHHHhcccCCcEEEecCCCCC
Q 007724 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---Q-----SECTAEEAYTWSKGRAIFASGSPFD 476 (591)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~-----aEct~edA~~wt~GraifAsGSPF~ 476 (591)
++-+..+|+++|..|+. ++-..++-+.+ ++-+|=|+.=.-||-. . .+-|.++++++... |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS-~l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~---f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTS-GLLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMG---IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCC-ccCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcCCE
Confidence 44466789999988886 34333333322 3445557877888863 2 23344454443211 11111123
Q ss_pred cceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHH
Q 007724 477 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (591)
Q Consensus 477 pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aA 519 (591)
||..+ ...||-.=|-..+|-+-=++-+..---.|.+-+-+|
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a 219 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDA 219 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44331 245777777777776665555554444455555544
No 161
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.60 E-value=6 Score=41.92 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.-++..|.++++++++++|.+ ..|.-+|.||... ..| ..+.++.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 456778888889999999999999999985 5788888887531 013 235555442
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888987 99999999999999999997
No 162
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.57 E-value=5 Score=43.74 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
...||.|+|||+-|+.+|..+..
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh
Confidence 45799999999999999999875
No 163
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.43 E-value=3.4 Score=42.23 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=55.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCC-CcCCCch---hhhhhccccCCCCCHHHHhc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH---FKKPWAHEHEPVNNLLDAVK 408 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-r~~~l~~---~k~~fA~~~~~~~~L~e~V~ 408 (591)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+. +...+.- ...... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999988653 4 46788876 210000 0000100 000000 0011234555544
Q ss_pred ccCCcEEE-eccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 007724 409 VIKPTILI-GSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (591)
Q Consensus 409 ~vkPtvLI-G~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (591)
. +|++| .+.+ ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 ~--~d~vilavk~---~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 P--FDLVILAVKA---YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred C--CCEEEEEecc---cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 3 67655 3333 2479999988763 45668888999863
No 164
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.32 E-value=6.6 Score=41.72 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
+=.-+|-+|++.=++..+.+++..++|++|.+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~------------ 192 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK------------ 192 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 34567788889999999999999999999975 578888888754 242 35555542
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 193 ------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 ------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1357888887 99999999999999999997
No 165
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.30 E-value=1.4 Score=43.64 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=52.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc---c-CCCCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---H-EPVNN 402 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~---~-~~~~~ 402 (591)
++|++.||+|+|+|.-|.=+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... + +....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999764 87 8999999973 2221 2332 112221 1 11235
Q ss_pred HHHHhcccCCcEEEecc
Q 007724 403 LLDAVKVIKPTILIGSS 419 (591)
Q Consensus 403 L~e~V~~vkPtvLIG~S 419 (591)
+.+.++...|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888899999877543
No 166
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=81.27 E-value=14 Score=39.06 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=88.3
Q ss_pred cCCCeeeccCC---CchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcChHHHHHHHH
Q 007724 297 GTTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAEL 349 (591)
Q Consensus 297 r~~~~~FNDDi---QGTaaV~LAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~l 349 (591)
+..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|--+|++
T Consensus 84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~ 163 (311)
T PRK08410 84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI 163 (311)
T ss_pred hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHH
Confidence 34566666421 335556677777776632 246899999999999999999998
Q ss_pred HHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCC
Q 007724 350 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTF 425 (591)
Q Consensus 350 l~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~F 425 (591)
+... |+ +|+.+|+.+- . . . ..| ...+|.|+++. .|+++=. ...-++|
T Consensus 164 ~~~f-----gm-------~V~~~d~~~~---~--~---~--~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li 214 (311)
T PRK08410 164 AQAF-----GA-------KVVYYSTSGK---N--K---N--EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLI 214 (311)
T ss_pred Hhhc-----CC-------EEEEECCCcc---c--c---c--cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhccc
Confidence 8542 64 6888888531 0 0 0 011 12479999987 8888732 2334799
Q ss_pred CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEE
Q 007724 426 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 468 (591)
Q Consensus 426 t~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w--t~Grai 468 (591)
+++.++.|. +..++.=.|. .++-=|+|+.. ..|+.-
T Consensus 215 ~~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 215 AYKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred CHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 999999996 5667765554 55555554422 467654
No 167
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.26 E-value=4.3 Score=43.07 Aligned_cols=102 Identities=16% Similarity=0.320 Sum_probs=64.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc--ccC-CCCCHHHHhcc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~--~~~-~~~~L~e~V~~ 409 (591)
||.|+|||..|.-+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. +.. ...+ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998764 255 3689999973111111111233211 2211 100 0123 356666
Q ss_pred cCCcEEEeccCC---CCCCC--------------HHHHHHHHcCCCCcEEEEcCCCC
Q 007724 410 IKPTILIGSSGV---GRTFT--------------KEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 410 vkPtvLIG~S~~---~g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.|++|=+.+. +| -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 8888855554 34 23 57788888999999999999997
No 168
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.18 E-value=2.1 Score=39.31 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=28.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
||+++|+|.-|.-+|+.|+.. |+ ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999764 76 7999999873
No 169
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.93 E-value=7.3 Score=41.56 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
+-.-+|-.|++.=++..|.++++++++++|.+ ..|.-+|.||.. .|+. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 33456778888888999999999999999975 578888887753 2321 01345555443
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 170
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.81 E-value=7.2 Score=41.31 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
+=.-+|-+|++.=++..|.+++.++++++|-+ ..|--+|.||.. .| ..+.+|+|+
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~------------ 190 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK------------ 190 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 44567788888889999999999999999976 578888888753 24 245555543
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 191 ------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 ------------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 171
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.67 E-value=3.9 Score=41.97 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.|++.+++..+...+..+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3455666654555667899999999877777776653 24 368888763
No 172
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.49 E-value=11 Score=41.69 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=63.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc---CCCCCHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 405 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~---~~~~~L~e 405 (591)
+..+||+|+|.|-.|.++|++|.. .|. .+.+.|.+-- ....+.-..+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999998865 363 5778886420 01111000111100 00011223
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007724 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~ 485 (591)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++.+.+.+.|-.||| ||||-
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC-------CCHHH
Confidence 343 478766444443 22455555543 346775 2222 3445445678889997 67654
No 173
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.32 E-value=7.6 Score=41.18 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
=.-+|-+|++.=++..|.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+++|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3466778888888999999999999999986 568888887753 24 245555442
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788887 99999999999999999997
No 174
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.29 E-value=5.3 Score=41.87 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc---CCCCCH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNL 403 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~---~~~~~L 403 (591)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=.-.. +|+. |..+-.+. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999988764 87 78999998744332 2442 21111110 011246
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 007724 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (591)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 6667777777765432 234455544443321223356666666543
No 175
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=80.29 E-value=7.1 Score=38.99 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=51.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHh
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee-A~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V 407 (591)
..++||.|+|.|..+ .+|.-+...|.. ++..+- +..-+.+.|..-+++.-- +-..+-..|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa-~~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSA-ANAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHH-HHHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 457899999999887 478877776643 110000 112222333322222110 112334445542 32222
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHH
Q 007724 408 KVIKPTILIGSSGVGRTFTKEVIEAMA 434 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma 434 (591)
-+-|++|+.|..|. |+++++.+.
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH
Confidence 35799999999887 899999874
No 176
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.99 E-value=5.3 Score=40.67 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=55.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCC-CcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
||.|+|+|+.|..+|..+.+. | .+++++|+++=-.+. +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888653 5 468888874211000 0000100000000000112345443 3 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (591)
+|++| ++... .-++++++.++... +.-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78776 44433 34799999998653 334677799975
No 177
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=79.99 E-value=1.8 Score=50.53 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
.+|++.||+++|||.-|+-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 87 79999998643
No 178
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.88 E-value=2.1 Score=43.69 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=32.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999764 87 799999987
No 179
>PRK05442 malate dehydrogenase; Provisional
Probab=79.81 E-value=12 Score=40.20 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=64.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc--cCCCcCCCchhhhhhccccCCCCCHHHHhcc
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (591)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.=. .++..-+|.+...++-+...-..+..+.++.
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998876653 33100001389999985311 1111112444332332211111345677776
Q ss_pred cCCcEEEeccCC---CCC-----------CCHHHHHHHHcCC-CCcEEEEcCCCC
Q 007724 410 IKPTILIGSSGV---GRT-----------FTKEVIEAMASFN-EKPLILALSNPT 449 (591)
Q Consensus 410 vkPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (591)
.|++|=+.+. +|- .=+++.+.+.+++ ...||+-.|||-
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 8888744443 331 1245667777766 699999999997
No 180
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.66 E-value=18 Score=38.67 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=73.7
Q ss_pred cCCCeeecc-CC--CchhHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcChHHHHHHHHHHHHH
Q 007724 297 GTTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 354 (591)
Q Consensus 297 r~~~~~FND-Di--QGTaaV~LAgll~A~r~-------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~ 354 (591)
+..+.+.|- +. +.+|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+...
T Consensus 90 ~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~- 168 (330)
T PRK12480 90 KHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF- 168 (330)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-
Confidence 345555553 22 23444567777766653 13468899999999999999999988642
Q ss_pred HHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEec-cCC---CCCCCHHHH
Q 007724 355 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS-SGV---GRTFTKEVI 430 (591)
Q Consensus 355 ~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~-S~~---~g~Ft~evv 430 (591)
|. +++.+|+.. + ... .+.+ ...+|.|+++. .|+++=. ... -+.|.++++
T Consensus 169 ----G~-------~V~~~d~~~----~---~~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 169 ----GA-------TITAYDAYP----N---KDL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred ----CC-------EEEEEeCCh----h---Hhh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHH
Confidence 63 688888641 1 000 1111 23478888886 7876622 222 156777788
Q ss_pred HHHHcCCCCcEEEEcCC
Q 007724 431 EAMASFNEKPLILALSN 447 (591)
Q Consensus 431 ~~Ma~~~erPIIFaLSN 447 (591)
..|. +..++.-.|.
T Consensus 222 ~~mk---~gavlIN~aR 235 (330)
T PRK12480 222 DHVK---KGAILVNAAR 235 (330)
T ss_pred hcCC---CCcEEEEcCC
Confidence 8775 4556665554
No 181
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.57 E-value=3.8 Score=45.95 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
.|++.+++..|.++++.+++|+|+|.+|..++..+.. .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 4778888888889999999999999777777766653 252 5777775
No 182
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=79.49 E-value=7.7 Score=41.21 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=92.2
Q ss_pred chhHHHHHHHHHHHHHh----------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 007724 309 GTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv 372 (591)
..|--+++-+|+..|.. +..++++++.|+|-|..|..||+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666654422 3468899999999999999999998753 65 57777
Q ss_pred cCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 007724 373 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNP 448 (591)
Q Consensus 373 D~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (591)
|+.. .. .+... .+ ....+|.|+++. .|+++=+- ..-++|+++.++.|. +..++.=.|.
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR- 227 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLAR- 227 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECCC-
Confidence 7631 11 11111 11 123579999987 88887321 122678888888885 4556665554
Q ss_pred CCCCCCCHHHHh--cccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhh
Q 007724 449 TSQSECTAEEAY--TWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 500 (591)
Q Consensus 449 t~~aEct~edA~--~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlg 500 (591)
.++--|+|+ +-..|+.-.|.--=|.+--.... ..-=+..|+++-|=+|
T Consensus 228 ---G~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 228 ---GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred ---ccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCC
Confidence 666666555 23466655443222321111100 0012446888888776
No 183
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.26 E-value=22 Score=35.99 Aligned_cols=95 Identities=12% Similarity=0.193 Sum_probs=52.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 412 (591)
||.|+|+|..|..+++-|... |.. .+.+++.|+. .+........+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~-------~~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN-------AQIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC-------HHHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 689999999999999988642 532 2456666642 111222222221 01123467777765 5
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 413 TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
|++| ++..+.. -+++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6555 3333322 366666652 33456777766655
No 184
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=79.09 E-value=11 Score=40.38 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=77.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc--cCCCcCCCchhhhhhccccCCCCCHHHHhcc
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (591)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .+...-+|.+...++........+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999877642 44100000169999974221 1111112443332332111111245677776
Q ss_pred cCCcEEEeccCCC---CC-C----------CHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEecC
Q 007724 410 IKPTILIGSSGVG---RT-F----------TKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 472 (591)
Q Consensus 410 vkPtvLIG~S~~~---g~-F----------t~evv~~Ma~~-~erPIIFaLSNPt~~aEct~edA~~wt~G--raifAsG 472 (591)
.|++|=+.+.+ |- . =+++++.|+++ +..-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 88888555554 21 1 24677888888 4899999999997 3444445555532 2277787
Q ss_pred CCCCc
Q 007724 473 SPFDP 477 (591)
Q Consensus 473 SPF~p 477 (591)
+=.+.
T Consensus 151 t~LDs 155 (324)
T TIGR01758 151 TRLDH 155 (324)
T ss_pred eehHH
Confidence 65443
No 185
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.04 E-value=6.1 Score=41.95 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=73.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc--CCCCCHHHHhcc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 409 (591)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=...+-.-+|.+.. +|.... ....+.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887753 255 4789999974111111001233222 232211 11134544 665
Q ss_pred cCCcEEEeccCC---CCCCCH------------HHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecC
Q 007724 410 IKPTILIGSSGV---GRTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 472 (591)
Q Consensus 410 vkPtvLIG~S~~---~g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraifAsG 472 (591)
.|++|=+.+. +| -|. ++++.|.+++..-+|+-.|||.. ....-+++++ .-+=+|.+|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecC
Confidence 8888744443 33 233 67788889999999999999983 4444455543 112366665
Q ss_pred C
Q 007724 473 S 473 (591)
Q Consensus 473 S 473 (591)
.
T Consensus 146 t 146 (312)
T cd05293 146 C 146 (312)
T ss_pred c
Confidence 4
No 186
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.54 E-value=13 Score=39.61 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..+.+++++++|++|.+ ..|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 356777888888999999999999999986 578888887753 23210 0124444332
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1468888886 99999999999999999997
No 187
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=78.43 E-value=3.1 Score=46.57 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred eeeecCCCccHHHHHHHHcC-CCe--eeccCCCchhHHHHHHHHHHHHHhCC--------CcccceEEEeCcChHHHHHH
Q 007724 279 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 347 (591)
Q Consensus 279 IqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~A~r~~g~--------~l~d~riv~~GAGsAg~GIA 347 (591)
|.+|=+....-.++.++|.- ..| ++|++....|....+-++..++.... ...+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66666667777889999973 343 46887788888888888888875322 23456899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 348 ELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 348 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88854 374 56666654
No 188
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=77.96 E-value=1.1 Score=54.79 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|++.||+++|+|..|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 467889999999999999999999875 65211 13689999987
No 189
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.50 E-value=3.5 Score=46.16 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=58.6
Q ss_pred HHHHHHhhCCCeeeeeecCCCccHHHHHHHHcC-CCe--eeccCCCchhHHHHHHHHHHHHHh--------CCCcccceE
Q 007724 266 MSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEHRF 334 (591)
Q Consensus 266 v~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~A~r~~--------g~~l~d~ri 334 (591)
+..+.... |+ |..|=+....-.++.++|.- .+| ++|++..+.+....+-+++.++.. ...-.+.++
T Consensus 139 ~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dV 215 (515)
T TIGR03140 139 LNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDV 215 (515)
T ss_pred HHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCE
Confidence 33344444 54 44554666777788899974 444 458888888888888888877654 122446789
Q ss_pred EEeCcChHHHHHHHHHHH
Q 007724 335 LFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 335 v~~GAGsAg~GIA~ll~~ 352 (591)
||+|||+||+..|..+..
T Consensus 216 vIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 216 LVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred EEECCCHHHHHHHHHHHH
Confidence 999999999999887654
No 190
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=77.32 E-value=3.9 Score=38.52 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=25.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+|||+|+|.||+..|..+.. .| .+++++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEecc
Confidence 69999999999999999872 24 578888664
No 191
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.26 E-value=7.9 Score=42.05 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=27.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+++.+++|+|+|..|.++|+.+.+ .|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 567899999999999998888765 363 68888864
No 192
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=77.25 E-value=4 Score=44.20 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=72.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc----cCCCCCHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~----~~~~~~L~ 404 (591)
...-+++++|.|-+|+--|+..+ |+. -++.++|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999888654 442 467777764 222 33333344432 12234689
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHcCC-------CCcEEEEcCCCCCCCCCCHHH
Q 007724 405 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFN-------EKPLILALSNPTSQSECTAEE 458 (591)
Q Consensus 405 e~V~~vkPtvLIG~-----S~~~g~Ft~evv~~Ma~~~-------erPIIFaLSNPt~~aEct~ed 458 (591)
|+|++ .|.+||. +..|.+.|+|+++.|.... +.==+|-=|.||++++-|.+.
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9988886 4556789999999996421 222346667888777777654
No 193
>PRK07680 late competence protein ComER; Validated
Probab=77.14 E-value=5.2 Score=40.92 Aligned_cols=98 Identities=12% Similarity=0.244 Sum_probs=58.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 412 (591)
+|.|+|+|..|..+|..+... |.- ...+++++|++ . +........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999887643 420 12467877763 1 11111111110 01112467777764 7
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 007724 413 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (591)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (591)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7775 33333 3467888887654 34568889998763
No 194
>PRK06141 ornithine cyclodeaminase; Validated
Probab=77.10 E-value=18 Score=38.23 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=63.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc---cCCCCCHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLD 405 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~---~~~~~~L~e 405 (591)
....+++|+|+|..|..++..+... .++ ++|+++|+. .+ +...+...+.+. .....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~---~a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA---KAEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH---HHHHHHHHHHhcCCceEEeCCHHH
Confidence 3568999999999999998766542 233 688888763 11 123333333221 112367888
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 007724 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 458 (591)
+++. .|++|-+++.. .+|+.+.++ +.-.|-+. |++..+-|+.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 9975 89998766533 245655543 12244433 4566677888753
No 195
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.91 E-value=1.2 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~ 353 (591)
.+..+|+|+|||-||+..|++|.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3455899999999999999999886
No 196
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=76.89 E-value=8.4 Score=43.63 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=53.8
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC---CCC-----CCHHHHhcccCCcEEE-ecCCCCCccee
Q 007724 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QSE-----CTAEEAYTWSKGRAIF-ASGSPFDPFEY 480 (591)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~aE-----ct~edA~~wt~Graif-AsGSPF~pv~~ 480 (591)
.+|+.+|...+. .++.+-+..-.++-+|=+-+-.-||-. ..| -|.++++++.. .++ .-|. .||..
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lgk--~pv~v 185 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWGK--TPVRA 185 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcCC--ceEEe
Confidence 478888874332 233443333333334446777777643 222 23444444321 000 0111 12222
Q ss_pred CCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007724 481 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 520 (591)
Q Consensus 481 ~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA 520 (591)
+ ..||-.+|-.++|.+.=+..+...--++.+-+..+-
T Consensus 186 ~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 186 K---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred c---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 236789999999988888777766656666666554
No 197
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.30 E-value=13 Score=38.72 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=56.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCCCCCHHHHhcccC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~~~~L~e~V~~vk 411 (591)
+|.|+|.|..|..+|.-+... |. +++++|++. ++ .+. ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999988652 53 577777631 11 111 2111 122357778887643
Q ss_pred -CcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 007724 412 -PTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (591)
Q Consensus 412 -PtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (591)
++++|= +.......+++++.+.. ..+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566652 33233356677666544 34567888887743
No 198
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.27 E-value=12 Score=41.73 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+...||+|+|+|-+|.++|+.+.. .|. .+.+.|++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~ 47 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN 47 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC
Confidence 3566899999999999999998864 363 57888864
No 199
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.26 E-value=23 Score=35.93 Aligned_cols=47 Identities=34% Similarity=0.435 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 316 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
+..+.|++..+. ..+.+++|+|+|+.|.-.+.+. . ..|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k----~~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-A----AAGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-H----HcCC------CEEEEECC
Confidence 334556655544 3788999999987665544433 2 2364 56887764
No 200
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=76.22 E-value=21 Score=40.60 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=109.0
Q ss_pred CCCeeeccCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 007724 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (591)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (591)
..+++.|--- +.+|=-+++.+|+..|. .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666321 23455567777766552 24568999999999999999999988642
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHH
Q 007724 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEA 432 (591)
Q Consensus 357 ~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~ 432 (591)
|+ +++.+|+.. ... .. ..+ ......+|.|+++. .|+++=. ...-++|+++.+..
T Consensus 161 --G~-------~V~~~d~~~--~~~------~~-~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPE------RA-EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--Chh------HH-Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 64 688888741 110 00 001 11112478898876 7877721 12346899999998
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccC
Q 007724 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 512 (591)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~It 512 (591)
|. +..++.=.|.-.---|..--+|++ .|+.-.|.=-=|++=-.... .--+..|+.+-|=+|-....+ .
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 85 566777666644333333334443 66654442111110000011 112456888999887433322 2
Q ss_pred HHHHHHHHHHHHcccCc
Q 007724 513 DDMLLAASEALAKQVTE 529 (591)
Q Consensus 513 d~m~~aAA~aLA~~v~~ 529 (591)
..|...+++.+-+....
T Consensus 287 ~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 287 ENVATQVAEQVLDALKG 303 (525)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33444455555554443
No 201
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=75.98 E-value=1.3 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
+...+.||||+|||.||++-|.-|.+
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999884
No 202
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.45 E-value=19 Score=38.28 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
=.-+|-.|++.=++..+.+++++++|++|.+ ..|--+|.||.. .|. .+.++.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------------
Confidence 3466778888888999999999999999975 578888888753 242 35555442
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
..+|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 190 -----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 -----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 203
>PLN02527 aspartate carbamoyltransferase
Probab=75.39 E-value=94 Score=33.17 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=80.4
Q ss_pred HHHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeec--cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHH
Q 007724 269 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGI 346 (591)
Q Consensus 269 v~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GI 346 (591)
+-.+| .++++ .-.+......+ +.+| .++||.| |+...-=.=+||=++.-.+..| ++++.||+++|.+.=+ -+
T Consensus 92 vls~y-~D~iv-iR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv 165 (306)
T PLN02527 92 TVEGY-SDIIV-LRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RT 165 (306)
T ss_pred HHHHh-CcEEE-EECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hh
Confidence 33456 44433 44454444333 3454 4789999 4455666677888887777666 5999999999988422 24
Q ss_pred HHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc-C---CCCCHHHHhcccCCcEEEeccCCC
Q 007724 347 AELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTILIGSSGVG 422 (591)
Q Consensus 347 A~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~-~---~~~~L~e~V~~vkPtvLIG~S~~~ 422 (591)
++-++.++.+-.|+ .|.++-.+|+- +++....++++. . ...++.|+|+. .||+.-.+.+.
T Consensus 166 ~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q~ 229 (306)
T PLN02527 166 VRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQR 229 (306)
T ss_pred HHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcch
Confidence 55554444332253 68888777761 222222333321 1 12589999997 99999876553
No 204
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.03 E-value=13 Score=39.39 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc
Q 007724 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~ 387 (591)
+-.-+|-.|++.=++..|.+|++.++|++|.+ ..|--+|.||.. .|. .+.+++++
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 34567888888889999999999999999986 578888888853 242 45555442
Q ss_pred hhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1256677776 99999999999999999997
No 205
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=74.98 E-value=31 Score=36.00 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=28.0
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 319 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeC
Confidence 555554443 36889999999877765544332 2 364 57887765
No 206
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.65 E-value=20 Score=38.03 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..+.++++++++++|-+ ..|.-+|.||.. .| -.+.++.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456778888889999999999999999976 568888887753 23 245555332
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 207
>PLN03139 formate dehydrogenase; Provisional
Probab=74.59 E-value=26 Score=38.67 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=84.1
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHH
Q 007724 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (591)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e 405 (591)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ ..+ .. ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~---~~~-~~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE---LEK-ET--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh---hHh-hc--CceecCCHHH
Confidence 4568999999999999999999998653 64 5777887532 0 00 011 00 0112347999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCCCCCcce
Q 007724 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFE 479 (591)
Q Consensus 406 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~-~w-t~GraifAsGSPF~pv~ 479 (591)
+++. .|+++=.. ..-++|+++.+..|. +.-+++=.|. .++--|+|+ +. ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 88877321 113689999999996 4556665554 444444443 22 36766656554332211
Q ss_pred e-CCeeeCcCCccccccchhhh
Q 007724 480 Y-NGKVFVPGQANNAYIFPGFG 500 (591)
Q Consensus 480 ~-~G~~~~p~Q~NN~yiFPGlg 500 (591)
. ... .--+..|+.+-|=++
T Consensus 323 lp~d~--pL~~~pNvilTPHia 342 (386)
T PLN03139 323 APKDH--PWRYMPNHAMTPHIS 342 (386)
T ss_pred CCCCC--hhhcCCCeEEccccc
Confidence 1 000 011335888888776
No 208
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.52 E-value=14 Score=39.30 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..|.+++..++|++|.+ ..|.-+|.||.. .| ..+.++.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 356777888888999999999999999975 678888888853 24 245555432
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1257788887 99999999999999999997
No 209
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=74.34 E-value=66 Score=35.57 Aligned_cols=199 Identities=16% Similarity=0.179 Sum_probs=115.6
Q ss_pred HHHHHHHcCCCeeeccCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHH
Q 007724 290 FELLAKYGTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAE 348 (591)
Q Consensus 290 f~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ 348 (591)
.++-.--+..++++|--- +.+|=-+++.+|+.+|- .|..|.+.++.|+|-|..|.-+|+
T Consensus 89 id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~ 168 (409)
T PRK11790 89 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSV 168 (409)
T ss_pred ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHH
Confidence 333333346889998532 23455578888887763 245689999999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEec----cCCCCC
Q 007724 349 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRT 424 (591)
Q Consensus 349 ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~ 424 (591)
.+... |+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=. ...-++
T Consensus 169 ~~~~f-----Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~l 220 (409)
T PRK11790 169 LAESL-----GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNM 220 (409)
T ss_pred HHHHC-----CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhc
Confidence 88643 65 678888631 0 0010 01 123479999986 8887632 112368
Q ss_pred CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc--ccCCcEEEecCCC-C--CcceeCCeee-CcCCccccccchh
Q 007724 425 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSP-F--DPFEYNGKVF-VPGQANNAYIFPG 498 (591)
Q Consensus 425 Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wt~GraifAsGSP-F--~pv~~~G~~~-~p~Q~NN~yiFPG 498 (591)
|+++.+..|. +.-+++-.|. .++-=|+|+. -..|+ |.+.|.- | +|..-+.... .--+..|+++-|=
T Consensus 221 i~~~~l~~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPH 292 (409)
T PRK11790 221 IGAEELALMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292 (409)
T ss_pred cCHHHHhcCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCc
Confidence 9999999996 4556666554 4444444431 13566 3332221 2 2221110000 1123468999998
Q ss_pred hhHHHHHhCCcccCHHHHHHHHHHHHcccCc
Q 007724 499 FGLGLVISGAIRVHDDMLLAASEALAKQVTE 529 (591)
Q Consensus 499 lglG~~~s~a~~Itd~m~~aAA~aLA~~v~~ 529 (591)
+|-...-+ ...|...+++.+......
T Consensus 293 ia~~t~ea-----~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 293 IGGSTQEA-----QENIGLEVAGKLVKYSDN 318 (409)
T ss_pred CCCCHHHH-----HHHHHHHHHHHHHHHHcC
Confidence 88543222 244555566666665543
No 210
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=73.97 E-value=20 Score=38.30 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=94.6
Q ss_pred CCCeeeccCC---CchhHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcChHHHHHHHHHHHH
Q 007724 298 TTHLVFNDDI---QGTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 353 (591)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~ 353 (591)
..+++.|--- ..+|=-+++.+|+.+|- .|..|.++++.|+|-|..|..||+.+..+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 4555555322 23455567777766653 24568999999999999999999987523
Q ss_pred HHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHH
Q 007724 354 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEV 429 (591)
Q Consensus 354 ~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~ev 429 (591)
+ |+ ++...|+.. . . .....+ .....+|.|+++. .|+++=. ....|+|+++.
T Consensus 168 f----gm-------~V~~~~~~~----~--~---~~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 168 F----NM-------PILYNARRH----H--K---EAEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred C----CC-------EEEEECCCC----c--h---hhHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHH
Confidence 2 54 455566521 0 0 000111 1122479999986 8887621 12237899999
Q ss_pred HHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc--ccCCcEEEecCCCCC--cceeCCeeeCcCCccccccchhhhH
Q 007724 430 IEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--PFEYNGKVFVPGQANNAYIFPGFGL 501 (591)
Q Consensus 430 v~~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wt~GraifAsGSPF~--pv~~~G~~~~p~Q~NN~yiFPGlgl 501 (591)
++.|. +.-++.=.|. .++--|+|+- -.+|+.-.|.=-=|+ |...+. . -=...|+.+-|=+|-
T Consensus 223 l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~-p--L~~~~nvilTPHia~ 288 (323)
T PRK15409 223 FAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDS-P--LLSLPNVVAVPHIGS 288 (323)
T ss_pred HhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCc-h--hhcCCCEEEcCcCCC
Confidence 99996 4556665444 5555454432 146665443211111 110010 0 113458888887763
No 211
>PRK13938 phosphoheptose isomerase; Provisional
Probab=73.93 E-value=12 Score=37.38 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=54.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhc
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee-A~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (591)
.+.||.|+|.|..| -+|..+...|.. +++.+- +-..+-+......++.- .+ =..+-..|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-AN-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-hc-cccHHHHHHHH------HHhcC-
Confidence 57899999999988 677777766642 221110 01112222221111100 00 01122223321 22222
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 007724 409 VIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (591)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (591)
-+-|++|++|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35789999999875 999999874 344445554444443
No 212
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=73.87 E-value=13 Score=40.74 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..+.+++.+++|++|-+ -.|.-+|.||.. .| -.+.++.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC--------------
Confidence 456677788888999999999999999975 567788887754 24 245555432
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357788886 99999999999999999997
No 213
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=73.75 E-value=46 Score=37.94 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=111.2
Q ss_pred CCCeeeccCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 007724 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (591)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (591)
..+++.|-.- +.+|=-+++-+|+..|. .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 22455567777777654 24568899999999999999999988643
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 007724 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (591)
Q Consensus 357 ~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~ 432 (591)
|+ +++.+|+.. .+ + .. ..+ .. ...+|.|+++. .|+++=.- ..-++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~---~~-~~~--g~-~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-E---RA-AQL--GV-ELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-h---HH-Hhc--CC-EEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 688888742 11 0 00 001 00 11278898886 78876322 2237899999999
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccC
Q 007724 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 512 (591)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~It 512 (591)
|. +..++.-.|.-..--|..--+|++ .|+.-.|.=-=|.+--..... --+..|+.+-|=+|-...-+ .
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t~e~-----~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGASTAEA-----Q 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccchHHH-----H
Confidence 96 567777776644333333334443 566543321111100000111 12345899999887433322 2
Q ss_pred HHHHHHHHHHHHcccCcc
Q 007724 513 DDMLLAASEALAKQVTEE 530 (591)
Q Consensus 513 d~m~~aAA~aLA~~v~~~ 530 (591)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 445555666666655433
No 214
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.63 E-value=7.2 Score=32.38 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCccc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~ 379 (591)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988542 4 6899999887766
No 215
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=73.50 E-value=19 Score=39.18 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007724 309 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (591)
Q Consensus 309 GTaaV~LAgll~A~r~~--------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (591)
-||-.+++-+|.++|-. |..+.++||.|+|.|+.|.-||+.|..+ | ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57778888888887742 3468899999999999999999988763 2 12
Q ss_pred EEEEcCCCcccCCCcC-CCchhhhhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 369 ICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 369 i~lvD~~GLv~~~r~~-~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
|. +.+|.. .....+..++. .-++.|...+ .|+|+=.. ..-++|+++.+..|. +.=+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 333321 12233444443 2467777765 78877332 112689999999995 444554
Q ss_pred EcCC
Q 007724 444 ALSN 447 (591)
Q Consensus 444 aLSN 447 (591)
-.+.
T Consensus 251 N~aR 254 (336)
T KOG0069|consen 251 NTAR 254 (336)
T ss_pred eccc
Confidence 4443
No 216
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.21 E-value=22 Score=38.07 Aligned_cols=87 Identities=14% Similarity=0.258 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..+.++++++++++|.+ .-|--+|.||... +.. ....+.++.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 346778888888999999999999999986 5688888887531 110 00234444332
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 217
>PRK06487 glycerate dehydrogenase; Provisional
Probab=73.06 E-value=69 Score=34.08 Aligned_cols=186 Identities=16% Similarity=0.100 Sum_probs=107.8
Q ss_pred CCCeeeccCC---CchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcChHHHHHHHHH
Q 007724 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (591)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 350 (591)
..+.+.|--- +.+|=-+++-+|+..|-. +..|.++++.|+|-|..|--||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666322 345556677777765532 2358899999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 007724 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 426 (591)
Q Consensus 351 ~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 426 (591)
... |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ....|.|+
T Consensus 168 ~~f-----gm-------~V~~~~~~~-----~~~---~----~-----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EAF-----GM-------RVLIGQLPG-----RPA---R----P-----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hhC-----CC-------EEEEECCCC-----Ccc---c----c-----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 532 64 577777642 100 0 0 12379999986 8988732 23357999
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh--cccCCcEEEecCCCCC--cceeCCeeeCcCCccccccchhhhHH
Q 007724 427 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAY--TWSKGRAIFASGSPFD--PFEYNGKVFVPGQANNAYIFPGFGLG 502 (591)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~--~wt~GraifAsGSPF~--pv~~~G~~~~p~Q~NN~yiFPGlglG 502 (591)
++.+..|. +..++.=.|. .++--|+|+ +-.+|+.-.|.=-=|. |.. .+..+.--+..|+.+-|=+|-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccC
Confidence 99999996 5667765554 444444444 2236766544221111 111 1111110035689999988732
Q ss_pred HHHhCCcccCHHHHHHHHHHHHccc
Q 007724 503 LVISGAIRVHDDMLLAASEALAKQV 527 (591)
Q Consensus 503 ~~~s~a~~Itd~m~~aAA~aLA~~v 527 (591)
. ..-...|...+++.|....
T Consensus 289 t-----~e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 289 S-----REARQRIVGQLAENARAFF 308 (317)
T ss_pred C-----HHHHHHHHHHHHHHHHHHH
Confidence 2 1223344555555555444
No 218
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=72.99 E-value=18 Score=37.96 Aligned_cols=105 Identities=13% Similarity=0.232 Sum_probs=58.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (591)
.||.|+|+|..|-.|+.-|... | +. .++|++.|+. .+........|--. -..+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~--~~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVV--TTTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCc--ccCcHHHHHhh-
Confidence 5899999999998888877653 5 32 3678877663 11122233344211 13455566654
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt 463 (591)
.|+++ ++-.|- .=++|++.+....+..+|..+.=.. +.++.-.|.
T Consensus 63 -advv~-LavKPq-~~~~vl~~l~~~~~~~lvISiaAGv-----~~~~l~~~l 107 (266)
T COG0345 63 -ADVVF-LAVKPQ-DLEEVLSKLKPLTKDKLVISIAAGV-----SIETLERLL 107 (266)
T ss_pred -CCEEE-EEeChH-hHHHHHHHhhcccCCCEEEEEeCCC-----CHHHHHHHc
Confidence 66666 555442 2345666555444555555554333 444555553
No 219
>PRK06270 homoserine dehydrogenase; Provisional
Probab=72.97 E-value=28 Score=37.34 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=64.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccC---------C
Q 007724 332 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---------P 399 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~---~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~---------~ 399 (591)
-||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.++-++... ..|+.+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 4899999999999999998753 22222331 122456799998887653122211 22222111 1
Q ss_pred CCCHHHHhcccCCcEEEeccCC---CCCCCHHH-HHHHHcCCCCcEEEE
Q 007724 400 VNNLLDAVKVIKPTILIGSSGV---GRTFTKEV-IEAMASFNEKPLILA 444 (591)
Q Consensus 400 ~~~L~e~V~~vkPtvLIG~S~~---~g~Ft~ev-v~~Ma~~~erPIIFa 444 (591)
..++.|+++...+||+|=++.. ++-...++ .+++. +.++||.+
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVta 124 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVTS 124 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEcC
Confidence 2378999988889999977653 12222455 44454 35788873
No 220
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=72.96 E-value=17 Score=40.05 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc-
Q 007724 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH- 395 (591)
Q Consensus 317 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~- 395 (591)
-+..++......|++.|++|+|-+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+.+..+.+..
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3455566666778899999999988899999998763 37632 111110 0111 101111111111
Q ss_pred ----ccCCCCCHHHHhcccCCcEEEecc
Q 007724 396 ----EHEPVNNLLDAVKVIKPTILIGSS 419 (591)
Q Consensus 396 ----~~~~~~~L~e~V~~vkPtvLIG~S 419 (591)
+..+...+.+.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112223568899999999999976
No 221
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.64 E-value=11 Score=39.75 Aligned_cols=126 Identities=21% Similarity=0.325 Sum_probs=70.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccC-CCCCHHHHhcccC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~-~~~~L~e~V~~vk 411 (591)
||.|+|+|..|..+|-.++. .|+ .+.++++|.+-=...+...++.+. .+|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999887764 265 368999997410000000012211 11111100 01344 45665
Q ss_pred CcEEEeccCCCCC----C----------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEecCCCC
Q 007724 412 PTILIGSSGVGRT----F----------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 475 (591)
Q Consensus 412 PtvLIG~S~~~g~----F----------t~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraifAsGSPF 475 (591)
.|+.|=+.+.+.. . =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|.+|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 6777644443311 1 136777888889999999999996 444445555441 12366666443
No 222
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.55 E-value=18 Score=38.52 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch
Q 007724 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (591)
Q Consensus 310 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~ 388 (591)
=.-+|-.|++.=++..|.+++.+++|++|-+ ..|.-+|.||.. .|... ...+.++.|+
T Consensus 132 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------- 190 (287)
T PRK14181 132 FIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------- 190 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC-------------
Confidence 3466778888889999999999999999976 568888887754 22111 1234444331
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 -----------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 223
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=72.14 E-value=3.7 Score=43.38 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
++|++.+|+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 467889999999999999999999875 87 899999987
No 224
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=72.14 E-value=5.6 Score=38.71 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=50.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhh----hc---ccc--------
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP----WA---HEH-------- 397 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~----fA---~~~-------- 397 (591)
+|.|+|||..|.|||-+++.+ |. ++.++|.+-- .++..++. +. +..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~-------~l~~~~~~i~~~l~~~~~~~~~~~~~~~ 61 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPE-------ALERARKRIERLLDRLVRKGRLSQEEAD 61 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHH-------HHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChH-------HHHhhhhHHHHHHhhhhhhccchhhhhh
Confidence 689999999999999998764 64 7888988521 12111111 11 100
Q ss_pred ------CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 007724 398 ------EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (591)
Q Consensus 398 ------~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (591)
.-..+|.+++ . .|.+|=.-.-.--..+++.+.+.+.+..=.||+
T Consensus 62 ~~~~~i~~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 62 AALARISFTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp HHHHTEEEESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred hhhhhcccccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE
Confidence 1114676666 3 677776543333356778888877765444443
No 225
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.99 E-value=8.9 Score=37.20 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=23.5
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+++.+++|.|| |..|..+++.++ + .|. +++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467789999998 444544555443 3 363 58888875
No 226
>PRK06153 hypothetical protein; Provisional
Probab=71.37 E-value=3.7 Score=45.34 Aligned_cols=101 Identities=14% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc-----CCCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-----EPVN 401 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~-----~~~~ 401 (591)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+=+ .. .+|...---|-.+. ....
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~---SNLnRQ~gaf~~~DvGk~~~KVe 236 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQ---HNAFRSPGAASIEELREAPKKVD 236 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-cc---cccccccccCCHhHcCCcchHHH
Confidence 578899999999999999999998864 86 79999999722 22 12432210111110 1112
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-EcCCCC
Q 007724 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPT 449 (591)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt 449 (591)
-+.+.+....|.+ ......++++-+..+. +-.+|| ++=|..
T Consensus 237 vaa~rl~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 237 YFKSRYSNMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred HHHHHHHHhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 4666677677754 2334456888777653 445665 444444
No 227
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=71.33 E-value=4.8 Score=46.02 Aligned_cols=165 Identities=19% Similarity=0.289 Sum_probs=82.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCC-cCCCchhhhhhccccCCCCCHHHHh
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-KDSLQHFKKPWAHEHEPVNNLLDAV 407 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r-~~~l~~~k~~fA~~~~~~~~L~e~V 407 (591)
++..|.+++|||+-|++||+-|+.. |+ ++|.+||.--.-+.+- ..+|-.|..--++..+....-...+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 3568999999999999999999886 76 7899999853333221 0122222211111111112334445
Q ss_pred cccCCcEE-----EeccCCCCCCCHHHHHH-------HHc-CCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCC
Q 007724 408 KVIKPTIL-----IGSSGVGRTFTKEVIEA-------MAS-FNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 474 (591)
Q Consensus 408 ~~vkPtvL-----IG~S~~~g~Ft~evv~~-------Ma~-~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSP 474 (591)
+.+-|.+- +-.--.|--..++-++. +.+ ..++-+||=|.--- -+---|.- +...+-+.++-+--=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsR-ESRWLPtl-l~a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSR-ESRWLPTL-LAAAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccc-hhhhhHHH-HHhhhcceEeeeecc
Confidence 55555432 11221222233332221 111 23677999875421 11112211 112234554433333
Q ss_pred CCccee--CCeee----CcCCccccccchhhhHHHHHh
Q 007724 475 FDPFEY--NGKVF----VPGQANNAYIFPGFGLGLVIS 506 (591)
Q Consensus 475 F~pv~~--~G~~~----~p~Q~NN~yiFPGlglG~~~s 506 (591)
|+...+ .|-.. --+|.-+.-..||==||+..|
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 776543 34322 225666666777777777544
No 228
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=71.12 E-value=11 Score=39.42 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=58.5
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch-h----hhhhcc-ccCCCC
Q 007724 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-F----KKPWAH-EHEPVN 401 (591)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~-~----k~~fA~-~~~~~~ 401 (591)
++..+|+|.|| |-.|..+++.|++ .| .+++.+|++.- .. ....+ . +..+.. +..+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHH
Confidence 35678999996 7777777776664 25 36777776521 10 00100 0 001111 212224
Q ss_pred CHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 007724 402 NLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 446 (591)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 446 (591)
++.++++..+||++|=+.+.... .+..+++++...+ .+.+||.=|
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 67788888899999977764311 1345567766554 457888655
No 229
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.10 E-value=5.4 Score=40.87 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 87 789999987
No 230
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=70.93 E-value=8 Score=40.45 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=56.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCc-----hhhhhhccc-cCCCCCHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 405 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~-----~~k~~fA~~-~~~~~~L~e 405 (591)
.||.|+|+|..|..+|..+.++ | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999988763 5 368888874211000000000 000000000 0001233 4
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCC
Q 007724 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQ 451 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~ 451 (591)
+++ ++|++|=+.... ..+++++.+..+ .+..+|..++|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 444 478777443322 358888888764 455788888886643
No 231
>PRK06932 glycerate dehydrogenase; Provisional
Probab=70.67 E-value=39 Score=35.91 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~ 406 (591)
..|.++++.|+|-|..|--+|+++... |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 468899999999999999999987532 65 4666665310 000 0 113479999
Q ss_pred hcccCCcEEEe----ccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc--ccCCcEEEecCCCCC--cc
Q 007724 407 VKVIKPTILIG----SSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--PF 478 (591)
Q Consensus 407 V~~vkPtvLIG----~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wt~GraifAsGSPF~--pv 478 (591)
++. .|+++= +....|.|+++.+..|. +..++.=.|. .++-=|+|+. -.+|+.-.|.--=|. |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 898883 22334799999999995 5667776555 4444444442 235665444322221 11
Q ss_pred eeCCeeeC-cCCccccccchhhhH
Q 007724 479 EYNGKVFV-PGQANNAYIFPGFGL 501 (591)
Q Consensus 479 ~~~G~~~~-p~Q~NN~yiFPGlgl 501 (591)
..+.--.. --+..|+++-|=+|-
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCChhhHhhcCCCCEEECCcccc
Confidence 11110000 013568888887763
No 232
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=70.47 E-value=5.5 Score=42.69 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999775 87 799999986
No 233
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=70.42 E-value=70 Score=33.52 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=23.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
.+++++++|+|..|...+.++... .|- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 578999999998776655555432 132 46887775
No 234
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=70.39 E-value=11 Score=42.46 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=61.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc--cCCCCCHHHHhccc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 410 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~--~~~~~~L~e~V~~v 410 (591)
.|-|+|.|..|..+|..|... |. +++++|+. .+ ..+..++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999988653 63 57777763 11 122222221111 12335788888654
Q ss_pred -CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 007724 411 -KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 447 (591)
Q Consensus 411 -kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 447 (591)
+|+++| ++-++|...++|++.+..+ .+.-||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444566788898887654 56789999998
No 235
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=70.31 E-value=26 Score=37.01 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=66.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc----cCCCCCHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~----~~~~~~L~e 405 (591)
.-+++.|+|+|.=|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999887777666553 233 788888763 22 233444444321 122468999
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 007724 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 458 (591)
+++. .||++-+++. ..+|..++++ +.--|-++ |+--.+.|+.++-
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~------pg~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLG------DEYHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcC------CCceEEecCCCCCCcccCCHHH
Confidence 9987 9999976432 3477888776 22345554 3333579999874
No 236
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=70.18 E-value=18 Score=38.51 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=82.3
Q ss_pred CCeeeeeecCCCccHHHHHHHHc--CCCeeecc--------CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HH
Q 007724 275 EKVLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AG 343 (591)
Q Consensus 275 p~~lIqfEDf~~~~Af~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag 343 (591)
-..+|||==...-++-.+|+.-. +++==||- ...+--.+|-+|++.-++..+.+|.+.++|++|.+. -|
T Consensus 90 ~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVG 169 (283)
T COG0190 90 DGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVG 169 (283)
T ss_pred cEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCc
Confidence 33567775555555556665532 11111111 133445778899999999999999999999999975 57
Q ss_pred HHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEeccCCCC
Q 007724 344 TGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGR 423 (591)
Q Consensus 344 ~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g 423 (591)
--+|.+|..+ +. .+.++.|+ .++|.+.+++ +|++|-.-|.++
T Consensus 170 kPla~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~ 211 (283)
T COG0190 170 KPLALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPH 211 (283)
T ss_pred HHHHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcc
Confidence 7788877652 32 34555442 1457788886 999999999999
Q ss_pred CCCHHHHH
Q 007724 424 TFTKEVIE 431 (591)
Q Consensus 424 ~Ft~evv~ 431 (591)
.|+.++|+
T Consensus 212 ~i~~d~vk 219 (283)
T COG0190 212 FIKADMVK 219 (283)
T ss_pred cccccccc
Confidence 99998887
No 237
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=69.96 E-value=12 Score=42.20 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=63.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc---cCCCCCHHHHhcc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAVKV 409 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~---~~~~~~L~e~V~~ 409 (591)
+|-|+|.|..|..+|..|... |. +++++|++ .++ .++....-.+. .....++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999988753 64 58888773 221 22221110000 1134689999976
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 007724 410 I-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (591)
Q Consensus 410 v-kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (591)
. +|+++| +.-.++...++|++.+.. ..+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 588555 344455678888887764 35678999999843
No 238
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=69.47 E-value=27 Score=36.38 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=26.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 36899999999999999887643 53 1468888874
No 239
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=69.45 E-value=5.4 Score=37.77 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+|+|||.||+..|-.|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 375 448889986
No 240
>PLN02602 lactate dehydrogenase
Probab=69.44 E-value=15 Score=39.86 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=73.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCC---CCHHHHhc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 408 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~---~~L~e~V~ 408 (591)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|..-=...+-.-+|.+.. +|-.. ... .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999997764 265 3689999973111111111233222 22211 111 24444 66
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEec
Q 007724 409 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 471 (591)
Q Consensus 409 ~vkPtvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraifAs 471 (591)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-++++++ =+-+|.+
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 5 88888554443 3 233 6788888999999999999997 334444555542 1235666
Q ss_pred CC
Q 007724 472 GS 473 (591)
Q Consensus 472 GS 473 (591)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 53
No 241
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.26 E-value=10 Score=43.13 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=27.6
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+..+++.+++|+|||.+|-+|+..+.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 456888999999999777666665543 35 2 68888763
No 242
>PRK07340 ornithine cyclodeaminase; Validated
Probab=69.10 E-value=36 Score=35.94 Aligned_cols=104 Identities=9% Similarity=0.093 Sum_probs=63.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCC--CCCHHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 406 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~--~~~L~e~ 406 (591)
....+++|+|+|..|...++.+... .++ ++|+++|+. .++ ...+...+.....+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888877653 243 578888774 111 22222223211111 3578899
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCC-CCCCCCCHHH
Q 007724 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNP-TSQSECTAEE 458 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNP-t~~aEct~ed 458 (591)
++. .|++|-++... .+|..+ ++ +.--|-++.-. ..+.|+.+|-
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~~------~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-AR------AGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-CC------CCCEEEecCCCCCCcccCCHHH
Confidence 975 99999776533 355542 22 44456666542 2468888763
No 243
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.69 E-value=24 Score=37.78 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..|.+++++++|++|.+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 356778888888999999999999999976 578888888854 243 34555332
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 244
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.58 E-value=6.2 Score=41.84 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 87 799999987
No 245
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.40 E-value=7.3 Score=41.49 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.5
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007724 331 EHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (591)
..||.|+|||+-|+.+|..+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998864
No 246
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=68.26 E-value=7.1 Score=41.90 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=28.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 467899999999999999988753 42 2368888764
No 247
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=68.24 E-value=7 Score=39.48 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
-+|+|+|||.||+-.|..|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhccc
Confidence 4799999999999999888753 75 4778887644
No 248
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=68.10 E-value=21 Score=38.96 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh
Q 007724 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (591)
Q Consensus 311 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~ 389 (591)
.-+|-.|++.=++..|.+++++++|++|-+ ..|.-+|.||.. .|. .+.++.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC--------------
Confidence 456777888888999999999999999975 567788877754 242 34555442
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007724 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (591)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (591)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 248 ----------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 248 ----------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 249
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=68.01 E-value=15 Score=39.61 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=67.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC-CcccCCCcCCCchhhhhhc-ccc--CCCCCHHHHh
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWA-HEH--EPVNNLLDAV 407 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~r~~~l~~~k~~fA-~~~--~~~~~L~e~V 407 (591)
.||.++|||..|...|-+|+. .++. +.+.|+|.. +...-... +|.+-. .+. .+. ....+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~-DL~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVAL-DLSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhc-chhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999988888733 2552 479999987 22211111 233211 111 110 00022 3556
Q ss_pred cccCCcEEE---eccCCCCC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 007724 408 KVIKPTILI---GSSGVGRT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 462 (591)
Q Consensus 408 ~~vkPtvLI---G~S~~~g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w 462 (591)
+. .|+.+ |....+|- .-+++.+++++++...||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 65 77776 33444451 3467888899999999999999999 77766
No 250
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=67.19 E-value=7.4 Score=39.48 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=42.3
Q ss_pred HHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 007724 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (591)
Q Consensus 293 L~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv 372 (591)
++||..++....-.. +- -++|++-|++++|+|.-|.-+++.++.+ |+ ++++++
T Consensus 8 ~~ry~Rqi~l~~~~~---------------~~-q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~ 60 (254)
T COG0476 8 IERYSRQILLPGIGG---------------EG-QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIV 60 (254)
T ss_pred HHhhcceeeecccCH---------------HH-HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEE
Confidence 457766666654332 11 3578899999999999999999988775 76 669999
Q ss_pred cCC
Q 007724 373 DSK 375 (591)
Q Consensus 373 D~~ 375 (591)
|.+
T Consensus 61 D~d 63 (254)
T COG0476 61 DFD 63 (254)
T ss_pred cCC
Confidence 986
No 251
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=66.57 E-value=28 Score=43.13 Aligned_cols=101 Identities=14% Similarity=0.208 Sum_probs=52.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc------------Ce---EEE--EcCCCccc-CCCcCCCchhhh
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL--VDSKGLIV-SSRKDSLQHFKK 391 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~------------~~---i~l--vD~~GLv~-~~r~~~l~~~k~ 391 (591)
.--+|||.|+|..|.|-++.+...=.+ =++.++-+ ++ +|- +.+.-.+. ++..... +.+.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f-~~~~ 278 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQF-DKAD 278 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCcccc-chhh
Confidence 357999999999999999987643111 02222211 11 221 11111111 1100001 1123
Q ss_pred hhccccCCCCCHH-HHhcccCCcEEEecc----CCCCCCCHH-HHHHHHc
Q 007724 392 PWAHEHEPVNNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 435 (591)
Q Consensus 392 ~fA~~~~~~~~L~-e~V~~vkPtvLIG~S----~~~g~Ft~e-vv~~Ma~ 435 (591)
.|+|+..=...+. +++.. .|+|||.- ..|.++|++ +++.|.+
T Consensus 279 y~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred hccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 3444322224454 67776 99999983 345679999 8888874
No 252
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=66.54 E-value=21 Score=38.22 Aligned_cols=113 Identities=19% Similarity=0.352 Sum_probs=70.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC-CcccCCCcCCCchhhhhhccccC--CCCCH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHE--PVNNL 403 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~r~~~l~~~k~~fA~~~~--~~~~L 403 (591)
.+.+..||.++|+|..|+.+|-.|..- |++ +++.++|-. +.+--.++| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 456688999999999999999888653 774 678899964 212222222 44 3344544311 11233
Q ss_pred HHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 007724 404 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 462 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w 462 (591)
.. -. ..++.|=+.+..+. .=+.+|..+.++.+.-|++-.|||. |.++|
T Consensus 84 ~~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTY 145 (332)
T KOG1495|consen 84 SV-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTY 145 (332)
T ss_pred cc-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHH
Confidence 21 11 24555544443322 1245677778899999999999999 77765
No 253
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.54 E-value=14 Score=38.65 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||.|+|||+.|+.+|..+.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999988653 4 456677764
No 254
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=66.36 E-value=13 Score=39.28 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=71.2
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEE
Q 007724 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 415 (591)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvL 415 (591)
|+|||..|..+|-+|+. .|+ .+.|.|+|.+-=..++-.-+|.+..-.+.++..-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998764 265 36899999842111111112333221111110001122466776 8998
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEecCC
Q 007724 416 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGS 473 (591)
Q Consensus 416 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G--raifAsGS 473 (591)
|=+.+.+ |- .=+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccc
Confidence 8665553 21 11457778888999999999999983 444455554411 22666653
No 255
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=66.13 E-value=9.6 Score=33.85 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=49.4
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCCcEEEe
Q 007724 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 417 (591)
Q Consensus 338 GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 417 (591)
|.|..|.+++++|...-.. -++ +=..++|+++++... +...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~~------~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-IDL------EVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CEE------EEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CCE------EEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 011 346677877444332 1112122233468999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 418 SSGVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 418 ~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
+++ ....++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 954 3344444455554 2345553
No 256
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=65.32 E-value=40 Score=35.90 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=65.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc---CCCCCHHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~---~~~~~L~e~ 406 (591)
.-.++.|+|+|.-|-..++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655444321 1 2 3789988873 222 223333222211 224689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 007724 407 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (591)
Q Consensus 407 V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 458 (591)
++. .|++|-++ +....|..+.++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 975 89998654 333478877775 566788887544 378999864
No 257
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=64.60 E-value=27 Score=34.92 Aligned_cols=60 Identities=18% Similarity=0.376 Sum_probs=41.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
||+|.|| |-.|-.+++.+.+ .| .+++.+++. .. ++. ...++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~-d~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QL-DLT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------cc-CCC-----------CHHHHHHHHHhCC
Confidence 6899997 8888888877754 25 367777763 11 121 1245778888889
Q ss_pred CcEEEeccCCC
Q 007724 412 PTILIGSSGVG 422 (591)
Q Consensus 412 PtvLIG~S~~~ 422 (591)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999877643
No 258
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.27 E-value=9.2 Score=40.95 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+++|+|.-|+-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 87 899999987
No 259
>PRK08618 ornithine cyclodeaminase; Validated
Probab=64.06 E-value=60 Score=34.45 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=60.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc----cCCCCCHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~----~~~~~~L~e 405 (591)
...++.|+|+|..|-.++..+... .++ +++.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999987777655432 244 789988874 222 22333323211 112467888
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHHHhc
Q 007724 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEAYT 461 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~aEct~edA~~ 461 (591)
+++. .|++|-++..+ ..|+ +.++ +.--|.++- +--.+.|+.+ +.+.
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~-~~~~ 236 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPS-EAIA 236 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCH-HHHh
Confidence 8875 89988665433 2333 3332 344465653 3225678887 4443
No 260
>PLN02688 pyrroline-5-carboxylate reductase
Probab=63.44 E-value=46 Score=33.59 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=54.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-cCCCcccCCCcCCCchhhhhhcccc-CCCCCHHHHhccc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 410 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~r~~~l~~~k~~fA~~~-~~~~~L~e~V~~v 410 (591)
||.|+|.|..|..||+-|++. |.- -..+|+++ |+. .++ . +.+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 689999999999999988653 420 02467776 542 111 1 1222111 122467777764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (591)
.|++| ++..+ ...+++++.+... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 66665 33333 4477887777543 3445666665544
No 261
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=63.17 E-value=27 Score=36.93 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=26.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCC--CcEEEEcCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASFNE--KPLILALSNPT 449 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e--rPIIFaLSNPt 449 (591)
+-|++||+|..|. |+++++.+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999887 9999998854333 35544444555
No 262
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=63.09 E-value=11 Score=35.63 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=55.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cCCCCCHHHHhccc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~~~~~L~e~V~~v 410 (591)
.||-|+|.|..|.+||+.|... |. +++.+|+. . +..+ .+... .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~---~~~~----~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----P---EKAE----ALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----H---HHHH----HHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----h---hhhh----hhHHhhhhhhhhhhhHhhc-
Confidence 4899999999999999998643 63 68888753 1 1122 23222 2234689999988
Q ss_pred CCcEEEeccCCCCCCCHHHHHH--H-HcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 007724 411 KPTILIGSSGVGRTFTKEVIEA--M-ASFNEKPLILALSNPTSQSECTAEEAYT 461 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~--M-a~~~erPIIFaLSNPt~~aEct~edA~~ 461 (591)
.+++|=+-.-+ .=.++++.. + +...+..||.=+|+-. +|.+-+-+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 57776432211 113444444 2 3345666777777755 5555544433
No 263
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=62.86 E-value=6.7 Score=40.97 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..+-|+|||-.|.|||+..+.+ |+ ++||+|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999987764 75 79999985
No 264
>PRK07877 hypothetical protein; Provisional
Probab=62.83 E-value=18 Score=42.93 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch----------hhhhhccc
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 396 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~----------~k~~fA~~ 396 (591)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|-+=+=.+ +|+. .|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~s----NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELS----NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEccc----ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 888899888764 63 268999998733211 2333 12111110
Q ss_pred -----cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 007724 397 -----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 397 -----~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (591)
.+. + .++.+.++. .|++|-++-- .=++-.|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 1 245556654 6777766552 23666777777777888888775
No 265
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=62.59 E-value=5.1 Score=35.07 Aligned_cols=90 Identities=11% Similarity=0.165 Sum_probs=51.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 412 (591)
||.|+|+|..|......+... ..+. +=..++|++ .+......+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~-------~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPD-------PERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSS-------HHHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCC-------HHHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 799999999977765544332 0121 334566663 1112222223321 245789999998889
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 413 TILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
|+++ +++.. ....++++...+... ||+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 55544 456666666554333 5554
No 266
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=62.58 E-value=51 Score=35.63 Aligned_cols=131 Identities=18% Similarity=0.253 Sum_probs=81.9
Q ss_pred HHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeecc-CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHH
Q 007724 270 KQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAE 348 (591)
Q Consensus 270 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ 348 (591)
-.+| .++++ +-.+. +.+.+.+.+| .++||+|- |-.---.=+|+=++.-.+..|+++++.||.++|-+.- ++++
T Consensus 98 ls~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~v~~ 171 (334)
T PRK01713 98 LGRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--NMGN 171 (334)
T ss_pred HHHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--CHHH
Confidence 3446 55544 33333 3334444454 46899993 3334455678888887777787899999999998743 4788
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-c---CCCCCHHHHhcccCCcEEEecc
Q 007724 349 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (591)
Q Consensus 349 ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG~S 419 (591)
-++.++.+ .|+ +|.++-.+++.-.+ .+-+.-+.+++. + ....++.++++. .||+.-.+
T Consensus 172 Sl~~~~~~-~g~-------~v~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt~~ 233 (334)
T PRK01713 172 SLLLIGAK-LGM-------DVRICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHTDV 233 (334)
T ss_pred HHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcc
Confidence 77776665 475 68888888773321 111111233332 1 123689999997 99998653
No 267
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.08 E-value=30 Score=33.68 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=23.5
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+++++++|.|+ |..|..+|+.+.+ .| -+++++++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 56789999996 5566666665543 25 367887764
No 268
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=61.79 E-value=9.5 Score=38.06 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+++|+|||.||+..|..+.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999987754 253 58899975
No 269
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=61.13 E-value=7.6 Score=40.66 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=33.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 380 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~ 380 (591)
+|++++|+++|.|-.|-=+++.|+. .|+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999888777776654 487 89999999866443
No 270
>PRK00536 speE spermidine synthase; Provisional
Probab=60.86 E-value=13 Score=38.89 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=59.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCC-CCHHHHhccc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~-~~L~e~V~~v 410 (591)
.||+|+|+|-.| +++-++.. + +++.|||-++-|++--++.++.....|..+.-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999984 55555432 1 3899999999777543334665555442211111 1121111 12
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF 475 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF 475 (591)
+=||+|-=|+ |+++-.+.+. .+++ -+|-.+.-|||||
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcCC----CChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 5788886553 6666655443 2333 3677777789997
No 271
>PRK06046 alanine dehydrogenase; Validated
Probab=60.86 E-value=70 Score=34.04 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=63.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc----cCCCCCHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~----~~~~~~L~e 405 (591)
.-.++.|+|+|..|...++.+... .++ ++++++|++- + ..+.+...+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~---~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----S---SAEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----H---HHHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999987777666432 233 7899998851 1 122333333211 112357888
Q ss_pred HhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 007724 406 AVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 458 (591)
+++ .|+++-++. ...+|..+.++ +.-.|-++ |+-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 788886653 33477777775 33346666 4544689999874
No 272
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=60.73 E-value=13 Score=39.73 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=42.8
Q ss_pred CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHH
Q 007724 306 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 352 (591)
Q Consensus 306 DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~ 352 (591)
---+||-++.-+++.+....|..|++..+-|+|| |..|.+||+.|..
T Consensus 142 gns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 142 GNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 3347999999999999999999999999999998 9999999999865
No 273
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=60.58 E-value=32 Score=36.76 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
|++.+|.|+|+|.-|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999998865
No 274
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=60.28 E-value=25 Score=36.87 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=61.1
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC-CcccCCCcCCCchhhhhhcccc-CCCCCHHHHhcccC
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~r~~~l~~~k~~fA~~~-~~~~~L~e~V~~vk 411 (591)
|.|+|||..|..+|-.++. .|+. ..+.++|.+ .++..-. .+|.+...++.... ....+ .+.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5799999999999876654 3662 579999973 2211111 12444332221100 00133 356665
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 412 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 412 PtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
.|++|=+.+.+ |- .=+++.+.+.+++..-+|+-.|||.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~ 118 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH
Confidence 78777444432 21 1145777788899999999999998
No 275
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=60.28 E-value=13 Score=35.58 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=28.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+|++.++||+|+|..|.-.+++|.++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999888888753 4 467777543
No 276
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=60.14 E-value=15 Score=37.88 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=28.9
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 007724 410 IKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (591)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (591)
-+-|++||+|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 117 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 36799999999886 999999874 444557776667776
No 277
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.99 E-value=13 Score=37.01 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888877653 4 47888864
No 278
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=59.96 E-value=11 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=26.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (591)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999988443 123 578999986443
No 279
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=59.84 E-value=5.9 Score=42.39 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIALE 353 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (591)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999988764
No 280
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=59.43 E-value=12 Score=40.03 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
.+|+|+|||-+|+.+|-.|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988752 5 4688999864
No 281
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=59.28 E-value=2.3e+02 Score=30.53 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=82.2
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC--------CCCCCHHHHhcccCCcEEEec-CC
Q 007724 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFAS-GS 473 (591)
Q Consensus 403 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~aEct~edA~~wt~GraifAs-GS 473 (591)
+.++=+.+||+++|+.++.+ +.-.-+.+=.++-||=|.+=.-||-. ..+.|.+++++-+- .+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~--~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVV--EFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHH--HHHHHcCC
Confidence 33444556799999987743 33333333225556668888999973 45778777765321 11112 31
Q ss_pred CCCcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHH
Q 007724 474 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAA 553 (591)
Q Consensus 474 PF~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~ 553 (591)
.||. ....||-.=|-..+|.+.-+..+..---.|.+.+-++.+.-+.+ . +-|+.-.+-+...+..
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~------p----mGpf~l~D~~GlD~~~ 241 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL------P----MGPFELADLIGLDVML 241 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC------C----ccHHHHHHHHhHHHHH
Confidence 1122 24568888899899988888877776667888887776653322 1 2233334444455555
Q ss_pred HHHHHHHH
Q 007724 554 NVAAKAYE 561 (591)
Q Consensus 554 aVa~~A~~ 561 (591)
.|++..++
T Consensus 242 ~i~~~~~~ 249 (307)
T COG1250 242 HIMKVLNE 249 (307)
T ss_pred HHHHHHHH
Confidence 55555553
No 282
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.25 E-value=31 Score=35.44 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=25.7
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+..+++.+++|.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4557788999999843 445555555544 36 368888775
No 283
>PRK06823 ornithine cyclodeaminase; Validated
Probab=58.81 E-value=66 Score=34.35 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=66.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc---cCCCCCHHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~---~~~~~~L~e~ 406 (591)
.-.++.++|+|.-+-..++.++.. ..+ ++|+++|+. .++ .+.+...+.+. .....+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999988887776553 133 788888773 222 22233222111 1123689999
Q ss_pred hcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 007724 407 VKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (591)
Q Consensus 407 V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~edA 459 (591)
++. .||++-+++ ...+|..+.++ +.-.|.+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 986 999987543 33478888776 455677775432 4789988654
No 284
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=58.64 E-value=43 Score=35.24 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=62.4
Q ss_pred hCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh----------hhhh
Q 007724 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 393 (591)
Q Consensus 325 ~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~----------k~~f 393 (591)
++..++..||+|.|| |-.|.-+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 345577789999997 99998888877642 5 257777753 11110111111 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 007724 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 394 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (591)
-. |-.+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 21122356677774 9999988775432 2457888887765568998754
No 285
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=58.49 E-value=39 Score=34.95 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=51.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (591)
+||.|+|+|..|..+|..+... | ++ ..+++++|++.- +.+...+..+. ......+..++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~~------~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSKN------EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCcH------HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999987653 4 21 246777776310 00111111110 00112355566653
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (591)
+|++| ++..+ ...+++++.+..+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66665 44433 3355666665432 2333555566544
No 286
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.47 E-value=14 Score=36.88 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+|+++|+||+|+|..|..-++.|+.+ | -+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999988888763 5 368888774
No 287
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=58.19 E-value=38 Score=38.12 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=64.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHH-HH-HhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhc
Q 007724 332 HRFLFLGA-GEAGTGIAELIALE-IS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (591)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~-~~-~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (591)
-||.|+|| |..|..+|-.|+.. +. ..+|+ -..+.++|.+-=..++-.-+|.+-.-++-++..-..+-.+..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 69999999 99999999987652 00 00133 2478889874211111111133322222221110112346666
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHc-CCCCcEEEEcCCCC
Q 007724 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPT 449 (591)
Q Consensus 409 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (591)
. .|++|=+.+.+ |- .=+++.+.+.+ .+..-||+-.|||-
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 6 88888555553 21 12467777778 58999999999997
No 288
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=58.01 E-value=12 Score=40.61 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=23.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 364 46666654
No 289
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=57.65 E-value=6.9 Score=41.10 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=26.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
+|||+|+|.||+-.|+.+.... ...-+|.|+|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---------~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---------LPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---------CCCCEEEEECCCCC
Confidence 5899999999998888775321 01357999997654
No 290
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=57.63 E-value=59 Score=31.05 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMA 434 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma 434 (591)
+-|++|++|..|. |+++++.+.
T Consensus 101 ~~Dv~I~iS~SG~--t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSGN--SPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHH
Confidence 4799999998775 999999985
No 291
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=57.20 E-value=11 Score=35.38 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.1
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998764 1123468999999655
No 292
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.10 E-value=49 Score=35.96 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.7
Q ss_pred cceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..+|.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 47899999 999999999988653 53 48888874
No 293
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=57.07 E-value=23 Score=39.39 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhc----
Q 007724 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 394 (591)
Q Consensus 319 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA---- 394 (591)
..++.-....|++.|+++++.+.-..++++++.+ .|+. +..+.+. .... ++....+....
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~-~d~~~l~~~~~~~~~ 377 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTE-EDYARIRELMGEGTV 377 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCH-HHHHHHHHHcCCCeE
Confidence 4444445567889999999888888999998754 4872 2222111 1111 10001101110
Q ss_pred -cccCCCCCHHHHhcccCCcEEEec
Q 007724 395 -HEHEPVNNLLDAVKVIKPTILIGS 418 (591)
Q Consensus 395 -~~~~~~~~L~e~V~~vkPtvLIG~ 418 (591)
.+..+...+.+.++..+||++||-
T Consensus 378 v~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 378 MLDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011122457888899999999984
No 294
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=56.91 E-value=22 Score=37.20 Aligned_cols=145 Identities=19% Similarity=0.278 Sum_probs=84.8
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCC-CH
Q 007724 325 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN-NL 403 (591)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~-~L 403 (591)
-|..++ +++|+||=--|.+||+.|... + +|+++|.+ +|-+.+-.+.-... .+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 899999999999999877432 2 79999874 34333432111111 11
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCe
Q 007724 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGK 483 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~ 483 (591)
.+ . .++||++|=++|-||+ +++.++.. + |=+|=.=||. ++-.=...++..+ .
T Consensus 91 ~~-~-~~~~DlIID~TGlGGv-~~~~Ls~~---~--p~v~IVEdP~--~~~sD~~I~~~~n------------------t 142 (252)
T PF06690_consen 91 NG-L-EGNPDLIIDTTGLGGV-DPDFLSKF---N--PKVFIVEDPK--GDGSDKTIYEINN------------------T 142 (252)
T ss_pred CC-C-CCCCCEEEECCCCCCC-CHHHHhcc---C--CCEEEEECCC--ccCcchhhhhccc------------------H
Confidence 11 1 2479999999999996 99888765 3 6677778888 4443333332211 1
Q ss_pred eeCcC--Cccccccchhh--hHHHHHhCCcccCHHHHHHHHHHHH
Q 007724 484 VFVPG--QANNAYIFPGF--GLGLVISGAIRVHDDMLLAASEALA 524 (591)
Q Consensus 484 ~~~p~--Q~NN~yiFPGl--glG~~~s~a~~Itd~m~~aAA~aLA 524 (591)
.-.+. -+.+..+.=-- |+.+=.||--.+|=+.+..|+..+=
T Consensus 143 ~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 143 EERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred HHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 11111 11222222223 4555567777788777777666553
No 295
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=56.77 E-value=13 Score=39.73 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=23.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.|+|+|||.||...|..+.+. |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999877643 54 45666665
No 296
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.68 E-value=29 Score=36.24 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=54.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch----hhhhhccccCCCCCHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----FKKPWAHEHEPVNNLL 404 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~----~k~~fA~~~~~~~~L~ 404 (591)
....||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.- ....+ ....-..+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~-~~~~~~~~~- 67 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHL-PPVQAYRSA- 67 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeee-cCceEEcch-
Confidence 3456899999999999999888653 4 34555554321 1100001100 00000 000001122
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 007724 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (591)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (591)
+.+. .+|++| ++... .-++++++.+... .+..+|+.|-|=-.
T Consensus 68 ~~~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 68 EDMP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hhcC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 2233 367766 44433 3478888888653 35678888988664
No 297
>PRK06184 hypothetical protein; Provisional
Probab=56.07 E-value=14 Score=40.96 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 46789999999999999988765 375 467777653
No 298
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.90 E-value=18 Score=40.77 Aligned_cols=104 Identities=17% Similarity=0.303 Sum_probs=65.0
Q ss_pred CCCCccccchhhHHHHHHhcCCCCCceeeEEe-ecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCe
Q 007724 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 277 (591)
Q Consensus 199 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~L-DvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~ 277 (591)
.|+-|. ||.++-.|.|+-=--...-+.| .|+.| .+ +...+ ..+= ++-
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL---~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLL---LATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHH---HhCC-CCc
Confidence 466553 7999999999865333566666 56643 22 23333 3333 788
Q ss_pred eeeeecCCCccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 007724 278 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (591)
Q Consensus 278 lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GA 339 (591)
+|-.|||.. +|.+=++-..+-.-|.+ .-.-|+|.||||++--.-..-.+.||+|+=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 999999964 45543343333333333 4667999999999765444555678888754
No 299
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=55.38 E-value=73 Score=30.04 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (591)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 4999998864 344455555444444
No 300
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=55.15 E-value=86 Score=33.79 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=62.1
Q ss_pred HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhh-ccccCCCCC
Q 007724 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 402 (591)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~f-A~~~~~~~~ 402 (591)
..|..+...++-|+|.|..|..||+.+. ++ |+ +|...|++.. +...+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 3456788999999999999999999887 43 54 4555665432 1111111 22 123
Q ss_pred HHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 007724 403 LLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 447 (591)
Q Consensus 403 L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (591)
|.|.++. .|+|+-.. ...++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8888886 89888432 223789999999996 4455554444
No 301
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.99 E-value=16 Score=38.12 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=24.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
.||.|+|||..|.|||.+++.+ |. +++++|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~ 36 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFET 36 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEEC
Confidence 4899999999999999988754 63 5666665
No 302
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.88 E-value=18 Score=39.92 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.1
Q ss_pred HhCCCcccceEEEeCcChHHHHHHHHHHH
Q 007724 324 LIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
..|..++.++++|+|+|.+|+.+|+.+.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34556788899999999999999988764
No 303
>PRK07236 hypothetical protein; Provisional
Probab=54.81 E-value=17 Score=38.59 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
.+..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456899999999999999998876
No 304
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=54.80 E-value=44 Score=36.19 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999998865
No 305
>PRK06847 hypothetical protein; Provisional
Probab=54.72 E-value=16 Score=38.21 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.1
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007724 331 EHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (591)
..+|+|+|||.||+..|..|..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999988764
No 306
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=54.60 E-value=19 Score=36.32 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999998876 36 48999999833
No 307
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.52 E-value=17 Score=37.54 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988653 53 68888864
No 308
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=54.41 E-value=24 Score=38.27 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=47.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc--ccCCCcC--CCchhhhhhccccCCCCCHHHHh
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKD--SLQHFKKPWAHEHEPVNNLLDAV 407 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--v~~~r~~--~l~~~k~~fA~~~~~~~~L~e~V 407 (591)
.+|.++|||+=|+.+|..+.+. |- .=++|..|.+=. |-.+|.+ .|+.. .+-..-.-..+|.+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~N~~yLp~i--~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRENPKYLPGI--LLPPNLKATTDLAEAL 69 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCcCccccCCc--cCCcccccccCHHHHH
Confidence 5899999999999999998763 41 236777654300 1112211 11110 0100011124787877
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHH
Q 007724 408 KVIKPTILIGSSGVGRTFTKEVIEAMA 434 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma 434 (591)
+. ---+|++++++ |..++++.|.
T Consensus 70 ~~-ad~iv~avPs~---~~r~v~~~l~ 92 (329)
T COG0240 70 DG-ADIIVIAVPSQ---ALREVLRQLK 92 (329)
T ss_pred hc-CCEEEEECChH---HHHHHHHHHh
Confidence 75 12345555553 4667777764
No 309
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=54.34 E-value=12 Score=40.84 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||||+|+|.||+..|+.|.+. +- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 11 1367888775
No 310
>PRK13937 phosphoheptose isomerase; Provisional
Probab=54.34 E-value=47 Score=32.44 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=24.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (591)
+-|++|++|..|. |+++++.+. +.+.-|+|.=-+||.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4699999999775 999998874 333344444333333
No 311
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=54.26 E-value=29 Score=41.00 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=62.5
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC--------CCCCCHHHHhcccCCcEEEecCCCCC
Q 007724 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFD 476 (591)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~aEct~edA~~wt~GraifAsGSPF~ 476 (591)
++=+.++|+++|..++.. +.-.-+....++-+|=|.+=..||.. ..+-|.++.+++... |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 333557899999877743 55444444444555668888999963 244455444443211 11212245
Q ss_pred cceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007724 477 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 520 (591)
Q Consensus 477 pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA 520 (591)
||..+ ..||-.=|-..+|-+--++.+...- .|.+.+-+|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 66553 6788888888888766555444433 5666666654
No 312
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.14 E-value=24 Score=40.03 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+-.+.+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3467899999999999999887754 363 47888864
No 313
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.70 E-value=18 Score=39.32 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=21.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
.+++.+++|+|+|.+|.++|+.+..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~ 26 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKK 26 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH
Confidence 3678899999999999999988875
No 314
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=53.45 E-value=41 Score=34.61 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||.|+|.|..|..+|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988753 53 57777764
No 315
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=53.42 E-value=24 Score=38.17 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (591)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999865
No 316
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=53.37 E-value=17 Score=40.25 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
+.-+++|+|||.+|+++|.-|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 456899999999999999988764 763 377888764
No 317
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=53.07 E-value=64 Score=32.32 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=43.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh----hhhhcc-ccCCCCCHHHH
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 406 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~----k~~fA~-~~~~~~~L~e~ 406 (591)
+|+|.|| |..|--+++.|+.. |- ..+++.+|+... ..+.+.+... ...+-. +..+..++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888887 77777777766542 31 136777775211 0111111111 011111 22233467888
Q ss_pred hcccCCcEEEeccCCC
Q 007724 407 VKVIKPTILIGSSGVG 422 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~ 422 (591)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 318
>PLN02240 UDP-glucose 4-epimerase
Probab=53.00 E-value=29 Score=35.87 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=58.4
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCch------hhhhhcc-ccCC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 399 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~------~k~~fA~-~~~~ 399 (591)
.|+..+|+|.|| |--|..+++.|.+ .| .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 7777777777654 25 3688887542100000000000 0011111 1122
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 007724 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 400 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (591)
..++.++++..+||++|=+.+.... -+..++++|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2356677777789999977664321 1335667776665567887543
No 319
>PRK12828 short chain dehydrogenase; Provisional
Probab=52.96 E-value=23 Score=33.86 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=23.3
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+++.+++|.|| |..|..+++.++ + .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA----A-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 466789999997 445555555443 3 263 58888874
No 320
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=52.95 E-value=41 Score=36.14 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=26.0
Q ss_pred CHHHHhcccCCcE-EEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 402 NLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 402 ~L~e~V~~vkPtv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
.|.+.... .|+ ++|.|-..+ |...++|+|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45555655 777 677665443 5666999998 6889997
No 321
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=52.92 E-value=24 Score=37.38 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=28.6
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc--CCCCcEEEEcCCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPTS 450 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt~ 450 (591)
+-|++||+|..|. |+++++.+.. ...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999876 9999998854 333477776677773
No 322
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=52.77 E-value=19 Score=39.63 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988854 25 368888874
No 323
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=52.66 E-value=20 Score=38.78 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=27.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (591)
.||||+|+|.||+..|..|.+. |- .-+|.|+|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999987542 21 1378999987543
No 324
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.52 E-value=49 Score=32.15 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=22.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.|++.+++|.||.+ ||...|+..+.+ .| -++++++++
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CC-------CeEEEecCC
Confidence 36778999999831 444445554444 25 367877764
No 325
>PRK07233 hypothetical protein; Provisional
Probab=52.52 E-value=15 Score=38.92 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999877653 6 367888776
No 326
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.34 E-value=19 Score=39.19 Aligned_cols=86 Identities=9% Similarity=0.129 Sum_probs=47.1
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhc----
Q 007724 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 394 (591)
Q Consensus 319 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA---- 394 (591)
..++......|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+.
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456778999999988888999987643 4873 2223111 1111 11111111110
Q ss_pred -cccCCCCCHHHHhcccCCcEEEeccC
Q 007724 395 -HEHEPVNNLLDAVKVIKPTILIGSSG 420 (591)
Q Consensus 395 -~~~~~~~~L~e~V~~vkPtvLIG~S~ 420 (591)
....+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 00111124668889999999999754
No 327
>PRK08163 salicylate hydroxylase; Provisional
Probab=52.32 E-value=18 Score=38.31 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007724 331 EHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (591)
..+|+|+|||.||+-.|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999987764
No 328
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=52.27 E-value=53 Score=33.82 Aligned_cols=86 Identities=12% Similarity=0.252 Sum_probs=50.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
||+|.|| |-.|.-+++.|.+ .| +++.+|+..-. +.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888776643 13 35666653110 0011122235777888888
Q ss_pred CcEEEeccCCCCC---C-------------CHHHHHHHHcCCCCcEEEEcC
Q 007724 412 PTILIGSSGVGRT---F-------------TKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 412 PtvLIG~S~~~g~---F-------------t~evv~~Ma~~~erPIIFaLS 446 (591)
||++|=+.+..+. . |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 9999966654322 1 334556555554 46887644
No 329
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=52.26 E-value=17 Score=40.61 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..|++-+|+++|+|..|+=+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999988764 87 799999986
No 330
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=52.15 E-value=68 Score=35.70 Aligned_cols=126 Identities=22% Similarity=0.225 Sum_probs=86.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCc
Q 007724 304 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (591)
Q Consensus 304 NDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~ 383 (591)
.|.-.||+--++-|++. .|..-+....+|+.|=|--|-|||..+.. .| -++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------ARVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CC-------CeEEEEec---------
Confidence 36678999999999874 56677899999999999999999987743 24 23443322
Q ss_pred CCCchhhhhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHH----
Q 007724 384 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEE---- 458 (591)
Q Consensus 384 ~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~ed---- 458 (591)
+|.+.-=|. ++=..-++.||++. .|++|=++|.-++.+.|.++.|. .-.|.+=+-- -.-|+..+.
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~N~GH-Fd~EI~~~~L~~~ 310 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILANAGH-FDVEIDVAGLEEL 310 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEecccc-cceeccHHHHHHh
Confidence 122111111 22234578999987 89999999999999999999995 3445433221 235666654
Q ss_pred Hhccc
Q 007724 459 AYTWS 463 (591)
Q Consensus 459 A~~wt 463 (591)
+.+|.
T Consensus 311 ~~~~~ 315 (420)
T COG0499 311 AVEKR 315 (420)
T ss_pred hhhHh
Confidence 45554
No 331
>PRK09126 hypothetical protein; Provisional
Probab=51.87 E-value=17 Score=38.27 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.1
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007724 331 EHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (591)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999988865
No 332
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=51.83 E-value=15 Score=38.99 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=48.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCC----CCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP----VNN 402 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~----~~~ 402 (591)
++|..-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +|. ..|-.+.+. ...
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 568899999999999999999988775 87 79999998732 211 132 222221111 124
Q ss_pred HHHHhcccCCcEEE
Q 007724 403 LLDAVKVIKPTILI 416 (591)
Q Consensus 403 L~e~V~~vkPtvLI 416 (591)
..+-++...|+|-|
T Consensus 84 Aa~~L~eLNP~V~V 97 (287)
T PTZ00245 84 ALGALQRLNPHVSV 97 (287)
T ss_pred HHHHHHHHCCCcEE
Confidence 56667777788877
No 333
>PRK12829 short chain dehydrogenase; Provisional
Probab=51.81 E-value=50 Score=32.34 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=23.4
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+++.+++|.||. . ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~-g--~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGA-S--GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCC-C--cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 3788999999984 1 344444444443 363 58888753
No 334
>PLN02268 probable polyamine oxidase
Probab=51.72 E-value=7.6 Score=41.91 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.5
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (591)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999998876
No 335
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=51.70 E-value=63 Score=31.85 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=51.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhc
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (591)
.++.||.|+|.|..+ -+|..+...|..+.++.. --.+++..+....+.. -. +-..+...|++. + .+.
T Consensus 42 ~~~~rI~i~G~G~S~-~~A~~~a~~l~~~~~~~r--~g~~~~~~~d~~~~~~-~~-~d~~~~~~~~~~------~-~~~- 108 (192)
T PRK00414 42 KAGGKVLSCGNGGSH-CDAMHFAEELTGRYRENR--PGYPAIAISDVSHLSC-VS-NDFGYDYVFSRY------V-EAV- 108 (192)
T ss_pred HCCCEEEEEeCcHHH-HHHHHHHHHhcccccCCC--CCceEEecCcHHHHhh-hh-ccCCHHHHHHHH------H-HHh-
Confidence 457899999999987 667777665542112110 0122222211101100 00 001111122211 1 111
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCC
Q 007724 409 VIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNP 448 (591)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNP 448 (591)
.-+-|++|++|..|. |+++++.+. +...-|+|-=-+|+
T Consensus 109 ~~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 109 GREGDVLLGISTSGN--SGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 124699999999774 999998874 33344555444443
No 336
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=51.64 E-value=28 Score=36.80 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=28.4
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHc--CCCCcEEEEcCCCCC
Q 007724 410 IKPTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPTS 450 (591)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt~ 450 (591)
-+-|++||+|..|. |+++++++.. ...-|+|.=-+||.+
T Consensus 130 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 130 TAKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 35799999999876 9999999853 334466665566763
No 337
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=51.40 E-value=19 Score=38.76 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=26.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (591)
+-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 34689999999999999988764 54 45666665444
No 338
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=51.33 E-value=1e+02 Score=29.25 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=61.2
Q ss_pred eeecCCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHH
Q 007724 192 RILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQ 271 (591)
Q Consensus 192 rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~ 271 (591)
||||+ |.|....|..+-.. ..--|-.+|.|+=.- ..+....+....+.+++.+ +..
T Consensus 1 rILGI-DPGl~~~G~av~~~-----------~~~~~~~~~~g~i~t-----------~~~~~~~~rl~~I~~~l~~-~i~ 56 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQ-----------EGRKLIYLASGVIRT-----------SSDAPLPSRLKTIYDGLNE-VID 56 (154)
T ss_pred CEEEE-ccCcCceEEEEEEe-----------eCCeEEEEEeeEEEC-----------CCCCCHHHHHHHHHHHHHH-HHH
Confidence 56776 77776555554221 012356677775321 1222234555554444444 445
Q ss_pred hhCCCeeeeeec-CCCccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcc-----cceEEEeCcChHHH
Q 007724 272 NYGEKVLIQFED-FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLA-----EHRFLFLGAGEAGT 344 (591)
Q Consensus 272 ~fGp~~lIqfED-f~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~-----d~riv~~GAGsAg~ 344 (591)
.|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++. .-|-.+.|.|.|.-
T Consensus 57 ~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 57 QFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 78786 566898 334443222110 1134556667777777754 45777889998875
No 339
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=51.31 E-value=7.2 Score=41.72 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=50.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhh-------hhcc-ccCCCCCHHH
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAH-EHEPVNNLLD 405 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~-------~fA~-~~~~~~~L~e 405 (591)
|+|+|+|..|-.+++.|.+. ... .++.+.|++ .++ +..... .+.+ +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 78999999999999988653 111 278888875 111 111111 1111 1222235888
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
.++. .|++|-+++.. ++..++++-.+. ..+.|=
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8887 69999988755 788888875542 334444
No 340
>PRK06392 homoserine dehydrogenase; Provisional
Probab=50.95 E-value=64 Score=34.77 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=49.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc---ccCCCC--CHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVN--NLLDA 406 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~-~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~---~~~~~~--~L~e~ 406 (591)
||.++|-|..|-+++++|.+.-. ++.|+. -+=+-+.|++|-+...++=++.+....-.+ ...... ++.+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 79999999999999999876210 112321 122556799998887653223222111110 001112 56666
Q ss_pred hcccCCcEEEeccC
Q 007724 407 VKVIKPTILIGSSG 420 (591)
Q Consensus 407 V~~vkPtvLIG~S~ 420 (591)
++ .+|||+|=+++
T Consensus 78 l~-~~~DVvVE~t~ 90 (326)
T PRK06392 78 FE-IKPDVIVDVTP 90 (326)
T ss_pred hc-CCCCEEEECCC
Confidence 65 58999998874
No 341
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=50.79 E-value=15 Score=39.09 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
.+|||+|+|.||+..|+.|... + ..-+|.+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988542 1 124688887654
No 342
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=50.60 E-value=20 Score=43.73 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC----CcccC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 380 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~----GLv~~ 380 (591)
-.+.||+|+|||.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 4589999999999999999988753 64 57888875 66543
No 343
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=50.50 E-value=50 Score=36.00 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||.|+|+|..|..+|..+... |. +++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G~-------~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----GH-------EVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----CC-------eEEEEECC
Confidence 689999999999999988653 53 57888864
No 344
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.29 E-value=76 Score=34.63 Aligned_cols=113 Identities=25% Similarity=0.332 Sum_probs=61.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (591)
.++|+|+|.|-.|..+|+.+.+ .|. +++..|.+- ..+.. ..+..+. ......+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~-------~~~~~--~~~~~~~-~~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL-------EALQS--CPYIHER-YLENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc-------cccch--hHHHhhh-hcCCcHHHhc--
Confidence 4689999999999888777653 363 588888641 11211 1111110 0011222223
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~ 485 (591)
+++++|-..+.+ .-.+.+.++..+. -||| |++. . +-++..+.+.+.|-.||| +|||-
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378888887776 4466666666543 3432 3321 1 112222335567888997 67654
No 345
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=50.16 E-value=18 Score=38.56 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.3
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007724 331 EHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (591)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999988865
No 346
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=50.15 E-value=20 Score=41.52 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=28.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-++.+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 357899999999999999988865 263 47888874
No 347
>PRK09186 flagellin modification protein A; Provisional
Probab=50.12 E-value=39 Score=33.02 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=21.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+++.+++|.||+. ||...++..+.+ .|. ++.+++++
T Consensus 2 ~~~k~vlItGas~---giG~~~a~~l~~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGG---LIGSALVKAILE-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCc---hHHHHHHHHHHH-CCC-------EEEEEecC
Confidence 4678999999843 344444444443 363 56666653
No 348
>PRK06475 salicylate hydroxylase; Provisional
Probab=50.12 E-value=18 Score=38.74 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (591)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999877754
No 349
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.11 E-value=22 Score=39.47 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=27.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+.+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 46799999999999999887754 25 368889875
No 350
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=49.94 E-value=1.8e+02 Score=34.50 Aligned_cols=104 Identities=16% Similarity=0.039 Sum_probs=56.8
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC--------CCCCHHHHhcccCCcEEEecCCCCCcce
Q 007724 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 479 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------aEct~edA~~wt~GraifAsGSPF~pv~ 479 (591)
+.++|+++|..++.+ +.-.-+.....+-+|=|.+=.-||... .+-|-++..++... |+..-=..||.
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~---~~~~~gk~pv~ 487 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA---LAKKQGKTPIV 487 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH---HHHHcCCceEE
Confidence 457899999877743 444444444445566688889998752 23343444332110 11111134554
Q ss_pred eCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007724 480 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 520 (591)
Q Consensus 480 ~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA 520 (591)
. ...||..=|-..+|-+--++.+...- ++.+-+-.|.
T Consensus 488 v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 488 V---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred E---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 4 24677777777777666555554432 4555555443
No 351
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=49.83 E-value=19 Score=38.03 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 263 688899764
No 352
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.81 E-value=89 Score=35.06 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=49.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhc
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (591)
+.++|++|+|.|..|+..++++.. .|. ++++.|.+ ..+ +...++.-++- .......+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~~g~~~-~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAERGVAT-VSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHhCCCEE-EcCcchHhHhh
Confidence 356899999999999999976653 363 57778853 111 11111100000 01112234454
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 007724 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (591)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (591)
. .|++|=.++.+ .-++++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 3 68888666766 34566555544 356776
No 353
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=49.78 E-value=71 Score=37.64 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE
Q 007724 291 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 370 (591)
Q Consensus 291 ~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~ 370 (591)
.+++||..++=-|+-... .++.|- ...++.||+++|.|.-|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF--~~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKF--ELSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhh--hhhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 111222 12389999999999887776665554 487 7898
Q ss_pred EEcCCCc
Q 007724 371 LVDSKGL 377 (591)
Q Consensus 371 lvD~~GL 377 (591)
.+|.+=.
T Consensus 158 ~vd~D~v 164 (637)
T TIGR03693 158 AIVTDAE 164 (637)
T ss_pred EEecccc
Confidence 8876644
No 354
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=49.51 E-value=22 Score=39.68 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456799999999999999888765
No 355
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=49.47 E-value=12 Score=34.63 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHH
Q 007724 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 434 (591)
Q Consensus 403 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma 434 (591)
+.+..+--+-|+||+.|+.|+ |+-+|+++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 444433345799999999987 899998874
No 356
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=49.43 E-value=20 Score=36.79 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
.+..++|+|||.||+-.|-.+.. .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 35689999999999998887654 364 688888764
No 357
>PRK07334 threonine dehydratase; Provisional
Probab=49.41 E-value=2.3e+02 Score=30.99 Aligned_cols=196 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcC--CCchhHHHHhhhhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCc
Q 007724 90 LQEKKLMNSIRQY--EVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK 167 (591)
Q Consensus 90 ~Q~~R~~~~~~~~--~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~ 167 (591)
+|++.+...+... .|||-+..-|...-..| ||.|+ .+.+|-|-| +||
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~--l~~K~--------------------------E~~nptGS~---KdR 56 (403)
T PRK07334 8 ADIRAAAARLAGQVLRTPCVHSRTLSQITGAE--VWLKF--------------------------ENLQFTASF---KER 56 (403)
T ss_pred HHHHHHHHHHhCCCCCCCccchHHHHHhhCCe--EEEEe--------------------------ccCCCCCCc---hHH
Q ss_pred chHHHHHh-cCCCCCeeEEEEecCceeecCCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccc
Q 007724 168 GKILEVLK-NWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYI 246 (591)
Q Consensus 168 g~i~~~l~-nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~Yl 246 (591)
+-...+.+ .-....-.|+..|.|.-=.+ ++.|.+..|+. |. |+++-++...++
T Consensus 57 ~a~~~i~~~~~~~~~~~vv~aSsGN~g~a---------------lA~~a~~~G~~---~~-iv~p~~~~~~k~------- 110 (403)
T PRK07334 57 GALNKLLLLTEEERARGVIAMSAGNHAQG---------------VAYHAQRLGIP---AT-IVMPRFTPTVKV------- 110 (403)
T ss_pred HHHHHHHhcCHHHhCCcEEEECCcHHHHH---------------HHHHHHHcCCC---EE-EEECCCCCHHHH-------
Q ss_pred cccccCCChhhhHHHHHHHHHHHHHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeeccCCCchhHHHHHHHHHHHHHhC
Q 007724 247 GLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIG 326 (591)
Q Consensus 247 G~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g 326 (591)
..-+.||.++.+. +-....|.+..+++..+--.|--+.-+.-....+---.|..+..
T Consensus 111 ---------------------~~~~~~GA~v~~~--~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 167 (403)
T PRK07334 111 ---------------------ERTRGFGAEVVLH--GETLDEARAHARELAEEEGLTFVHPYDDPAVIAGQGTVALEMLE 167 (403)
T ss_pred ---------------------HHHHHcCCEEEEE--CcCHHHHHHHHHHHHHhcCCEecCCCCCHHHHHhHHHHHHHHHh
Q ss_pred CCcccceEEEeCcChHH--HHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 327 GTLAEHRFLFLGAGEAG--TGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg--~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
. +.+-..+|++.|+.| .||+.-+...--. -+||.|+..|
T Consensus 168 q-~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~----------~~vi~ve~~~ 208 (403)
T PRK07334 168 D-APDLDTLVVPIGGGGLISGMATAAKALKPD----------IEIIGVQTEL 208 (403)
T ss_pred c-CCCCCEEEEecCHHHHHHHHHHHHHHhCCC----------CEEEEEEECC
No 358
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=49.12 E-value=1.9e+02 Score=34.32 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=84.9
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC--------CCCCHHHHhcccCCcEEEecCCCC
Q 007724 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPF 475 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------aEct~edA~~wt~GraifAsGSPF 475 (591)
.++-+.++|+++|..++.+ +.-.-+.+-.++-+|=|.+=.-||... .+-|.++.+++... |+..-=.
T Consensus 404 ~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~gk 478 (699)
T TIGR02440 404 KDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQGK 478 (699)
T ss_pred HHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcCC
Confidence 3444567899999887743 444434333356677788888999742 34455666554321 2221224
Q ss_pred CcceeCCeeeCcCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHH
Q 007724 476 DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANV 555 (591)
Q Consensus 476 ~pv~~~G~~~~p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aV 555 (591)
.||..+ ..||-.=|-.++|-+-=++.+..-- ++.+-+-.|.+.+ |.-..|+.-+..+-..+...+
T Consensus 479 ~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-----------G~p~GPf~l~D~vGld~~~~i 543 (699)
T TIGR02440 479 TPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-----------GFPVGPITLLDEVGIDVGAKI 543 (699)
T ss_pred eEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-----------CCCcCHHHHHHHhchHHHHHH
Confidence 566653 4688888888888777666555533 5777777665421 111234443344445555555
Q ss_pred HHHHHHc-CCCCCCCCchhHHHHHHh
Q 007724 556 AAKAYEL-GVATRLPRPQNLVKCAES 580 (591)
Q Consensus 556 a~~A~~~-G~a~~~~~~~d~~~~i~~ 580 (591)
.+..+++ |- ....|+-+.+++++
T Consensus 544 ~~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 544 SPILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHHhcCC--CCCCcHHHHHHHHC
Confidence 5544432 22 12223445566655
No 359
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.03 E-value=46 Score=32.59 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=22.9
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.++..+++|.|| |..|..+++.++ + .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELA----R-AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 356778999998 555555555543 3 363 57777764
No 360
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=48.89 E-value=56 Score=34.96 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=57.1
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchh--hhhhcc-ccCCCCCHHH
Q 007724 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 405 (591)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~--k~~fA~-~~~~~~~L~e 405 (591)
+++||+|.|+ |-.|..+++.|.+ .| -+++.+|+..- ..+... ...+-. |..+..++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999888888765 25 36888886431 001110 111111 1111223445
Q ss_pred HhcccCCcEEEeccCCCC--C---------------CCHHHHHHHHcCCCCcEEEEcC
Q 007724 406 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIFaLS 446 (591)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 554 5899997765321 1 2356778777776678998654
No 361
>PRK05993 short chain dehydrogenase; Provisional
Probab=48.80 E-value=37 Score=34.20 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=20.0
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..+++|.|| |..|..+|+.+ .+ .| -++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l----~~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARAL----QS-DG-------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHH----HH-CC-------CEEEEEECC
Confidence 357999998 44444444444 33 36 368888764
No 362
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=48.79 E-value=26 Score=28.77 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.1
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
|+|||.+|+..|-.|.+. | .++.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999888652 4 58999998643
No 363
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.69 E-value=34 Score=37.13 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=64.3
Q ss_pred eEEEe-CcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc-ccCCCCCHHHHhccc
Q 007724 333 RFLFL-GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (591)
Q Consensus 333 riv~~-GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~-~~~~~~~L~e~V~~v 410 (591)
+|++. |||-.|.-.+.+|+++ | .++.++|. |-+..+ +.+...+-+|-. +..+..-|.++++..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~-----G-------~~vvV~DN--L~~g~~-~~v~~~~~~f~~gDi~D~~~L~~vf~~~ 66 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKT-----G-------HEVVVLDN--LSNGHK-IALLKLQFKFYEGDLLDRALLTAVFEEN 66 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHC-----C-------CeEEEEec--CCCCCH-HHhhhccCceEEeccccHHHHHHHHHhc
Confidence 45555 5788888888877653 5 57888987 434333 334332223322 222224588999999
Q ss_pred CCcEEEecc---CCC------------CCC-CHHHHHHHHcCCCCcEEEEcC
Q 007724 411 KPTILIGSS---GVG------------RTF-TKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 411 kPtvLIG~S---~~~------------g~F-t~evv~~Ma~~~erPIIFaLS 446 (591)
||+++|=.. .+| ++. |-..|++|.+++-+.|||.=|
T Consensus 67 ~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSSt 118 (329)
T COG1087 67 KIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSST 118 (329)
T ss_pred CCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecc
Confidence 999998443 333 111 667899999999999999654
No 364
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.64 E-value=1e+02 Score=31.66 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=55.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc
Q 007724 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (591)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (591)
-||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ +.....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 38999999 99998888766431 232 3455677652 111101 111 1122367888876
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 452 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~a 452 (591)
+||++|=+|.+. ...++++...+. ..|+|.. ||...
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig---ttG~s 95 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG---TTGFT 95 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE---CCCCC
Confidence 599999888643 236666665543 5788865 45444
No 365
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=48.29 E-value=23 Score=38.87 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.++|+|||.||+.+|..+.+ .| .++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999987764 25 468888874
No 366
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=48.07 E-value=21 Score=40.12 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
-.|||+|+|.+|++||..+.. .|+ ++.|+|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999987765 375 588888763
No 367
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=48.04 E-value=39 Score=35.08 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
.||.|+|+|..|-.||.-|++ .|.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 379999999999999988764 2531 2356888876
No 368
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=47.91 E-value=97 Score=32.44 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=50.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
+||.|+|.|+.+. +|+.+...|.+ .| ++.++++.... . +. .... + -+
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~---------~-------~~--~~~~----~--~~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEA---------A-------HG--DLGM----V--TP 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHh---------h-------cc--cccc----C--CC
Confidence 6899999998775 77777666654 34 34444322100 0 00 0000 1 14
Q ss_pred CcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (591)
.|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999775 899998874 445557766555555
No 369
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=47.78 E-value=23 Score=38.52 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=27.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
+-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999987765 26 5799999864
No 370
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=47.53 E-value=22 Score=38.72 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
.++++|=||++|||..|.=++++|+.. |+ .+|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 467899999999999999999998764 76 78888887644
No 371
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=47.51 E-value=23 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
.|+|+|||.||+-.|-.+.+ .|+ ++.++|++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999877653 364 5778887643
No 372
>PRK07045 putative monooxygenase; Reviewed
Probab=47.39 E-value=24 Score=37.47 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (591)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999987765
No 373
>PRK06753 hypothetical protein; Provisional
Probab=47.21 E-value=23 Score=37.08 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.5
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (591)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888765
No 374
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=47.11 E-value=33 Score=39.87 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc-----------
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----------- 395 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~----------- 395 (591)
-+++++|++-|| ||.|-.++++|++. + .++|.++|++=. ++..-.+++.+
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~i 308 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYI 308 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEe
Confidence 367899999998 58888888888764 3 388999987411 12222222322
Q ss_pred -ccCCCCCHHHHhcccCCcEEEeccC
Q 007724 396 -EHEPVNNLLDAVKVIKPTILIGSSG 420 (591)
Q Consensus 396 -~~~~~~~L~e~V~~vkPtvLIG~S~ 420 (591)
+-.+...+.++++..|||+++=..+
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhh
Confidence 1122346899999999999997654
No 375
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=47.09 E-value=22 Score=39.50 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.2
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (591)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999987764
No 376
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=47.08 E-value=24 Score=36.82 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 35699999999999999877652 5 4788998764
No 377
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=46.72 E-value=16 Score=39.76 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..+..||||+|+|.||+..|+.|. + . .-+|.|+|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 355679999999999998876552 1 1 2368888875
No 378
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=46.71 E-value=27 Score=36.09 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999988753 5 368888863
No 379
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=46.67 E-value=76 Score=32.62 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 379999999999999998864 253 56777764
No 380
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.62 E-value=56 Score=32.07 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=26.2
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..++++.+++|.||++ ||...++..+.+ .|. +++++|++
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568899999999732 445555555544 363 68888875
No 381
>PRK07831 short chain dehydrogenase; Provisional
Probab=46.52 E-value=52 Score=32.55 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=22.6
Q ss_pred CcccceEEEeCc-Ch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGA-GE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GA-Gs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+++.+++|.|+ |+ .|..+|+.++ + .|. +++++|+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~----~-~G~-------~V~~~~~~ 51 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRAL----E-EGA-------RVVISDIH 51 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHH----H-cCC-------EEEEEeCC
Confidence 456789999998 43 5555555443 3 364 47777753
No 382
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.08 E-value=24 Score=38.67 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999998877652 5 4789999864
No 383
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=46.04 E-value=23 Score=37.26 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=24.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977754 364 57777765
No 384
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=46.03 E-value=40 Score=37.05 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=57.5
Q ss_pred eEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 333 RFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 333 riv~~GAGsAg~G-IA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- +.+.|......+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5899999999998 8988865 374 57778864210 1011211110110 01 11 12343 3
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc-CCcEEEecCC
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGS 473 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt-~GraifAsGS 473 (591)
+|.+|=.++.+ --++++.++.. ...||+ +.+|. ++.+. +.+.|-.|||
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT 107 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT 107 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC
Confidence 78888666665 35677777664 356665 33333 22332 3467777886
No 385
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=46.01 E-value=59 Score=31.98 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=23.6
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
++++++++|.|| |..|..+|+.++ + .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~----~-~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA----Q-AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH----H-cCC-------EEEEEeCC
Confidence 577899999997 455555555543 3 363 57777764
No 386
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=45.95 E-value=47 Score=35.19 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=54.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc---ccCCCCCHHHHh
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 407 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~---~~~~~~~L~e~V 407 (591)
-.++.|+|+|.-|.--++.+... .++ ++|+++|+. .. ....+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~---~~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE---RAEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH---HHHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh---HHHHHHHhhccccccceeccchhhhc
Confidence 36999999999888777766654 244 789988874 11 12333333333 112236899999
Q ss_pred cccCCcEEEeccCCCC---CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 007724 408 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~g---~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 458 (591)
+. .|+++-++.... +|..+.++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 899998764432 57777766 344566665322 345666643
No 387
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=45.90 E-value=92 Score=33.82 Aligned_cols=122 Identities=13% Similarity=0.137 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhh
Q 007724 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (591)
Q Consensus 314 ~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~f 393 (591)
+.|+.++|=.+..+.. -++.|+|+|.-+-... +++.+..++ ++|++.|+. .+....+...+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~ql----~a~~~v~~~------~~I~i~~r~-------~~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQARTQL----EALKAVRDI------REIRVYSRD-------PEAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHHHH----HHHHhhCCc------cEEEEEcCC-------HHHHHHHHHHH
Confidence 3445566655555532 4788999997655444 444433344 678877763 11122222222
Q ss_pred ccc----cCCCCCHHHHhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 007724 394 AHE----HEPVNNLLDAVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (591)
Q Consensus 394 A~~----~~~~~~L~e~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~ 461 (591)
.+. .....+++++|+. .|+++.++. ..-+|..++|+. .--|.-.=||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999997 999998753 234788888871 222333345777889999976543
No 388
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=45.76 E-value=24 Score=39.55 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
||+++|||..|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652211 2689999987
No 389
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=45.44 E-value=2.2e+02 Score=36.06 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc-----CCcEEEeccC
Q 007724 346 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----KPTILIGSSG 420 (591)
Q Consensus 346 IA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v-----kPtvLIG~S~ 420 (591)
|++.++..+.++.|++. ++|| +|. |..+-+-. .+ .+..++. . -.|+|+.+ ..-+++|+|.
T Consensus 487 i~~~~~~~~~~~~Gi~~----edIi-~DP-~i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~pg~~~~~GlSN 551 (1178)
T TIGR02082 487 ICKRAYNILTEKVGFPP----EDII-FDP-NILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEELPDAKISGGVSN 551 (1178)
T ss_pred HHHHHHHHHHHHcCCCH----HHEE-EeC-CccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhCCCCceEEEecc
Confidence 88888888775479974 5665 776 23222111 11 1112222 2 23666666 4568999998
Q ss_pred CCCCCC-----HHHHHH----HHcCCCCcEEEEcCCCCCC
Q 007724 421 VGRTFT-----KEVIEA----MASFNEKPLILALSNPTSQ 451 (591)
Q Consensus 421 ~~g~Ft-----~evv~~----Ma~~~erPIIFaLSNPt~~ 451 (591)
..=-|. .+++.. || -..=.=+|+.||...
T Consensus 552 ~SFglp~~~~~R~~ln~~FL~~a--~~~Gld~aIvnp~~~ 589 (1178)
T TIGR02082 552 VSFSFRGNPAAREAMHSVFLYHA--IRAGMDMGIVNAGKI 589 (1178)
T ss_pred cccCCCCCchHHHHHHHHHHHHH--HHcCCchhhcChhhh
Confidence 874453 344332 11 123344566788754
No 390
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=45.39 E-value=87 Score=31.43 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=50.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhh----hhhcc-ccCCCCCHHHH
Q 007724 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (591)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k----~~fA~-~~~~~~~L~e~ 406 (591)
||+|.|| |..|..+++.+.+ .| .+++++|+. .......+.... ..+.. +..+..++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788876 7677777666653 25 356677642 111001111110 01111 22223457777
Q ss_pred hcccCCcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEE
Q 007724 407 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILA 444 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFa 444 (591)
++..++|++|=+.+....+ +..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999555432111 2456677776655677773
No 391
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=45.36 E-value=88 Score=30.96 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=40.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhh-hhccccCCCCCHHHH
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWAHEHEPVNNLLDA 406 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~-~fA~~~~~~~~L~e~ 406 (591)
.|++.+++|.|+++ ||...++..+.+ .|. +++++|++.- .+...+. .+.-|..+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G~-------~v~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NGA-------NVVNADIHGG-------DGQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCCcc-------ccccCceEEEEccCCCHHHHHHH
Confidence 47788999999753 555566666654 363 6777776421 1111111 111122222345555
Q ss_pred hccc-----CCcEEEeccCC
Q 007724 407 VKVI-----KPTILIGSSGV 421 (591)
Q Consensus 407 V~~v-----kPtvLIG~S~~ 421 (591)
++.+ ++|+||=..+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999876654
No 392
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=45.34 E-value=29 Score=36.54 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=26.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.-+|+|+|||.||...|-+|...- +.|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 457999999999999988876520 1154 57777773
No 393
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=45.23 E-value=50 Score=36.02 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHH
Q 007724 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 319 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
..++......|++.|++|+|-+.-..++++.+.+
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 4444555566778899999999889999998876
No 394
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=45.22 E-value=36 Score=37.72 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=37.3
Q ss_pred HHHcCCCeeeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEc
Q 007724 294 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (591)
Q Consensus 294 ~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD 373 (591)
++|....+.+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 356677889999888988 256778999999733 444444444444 353 567776
Q ss_pred CC
Q 007724 374 SK 375 (591)
Q Consensus 374 ~~ 375 (591)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 54
No 395
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=45.20 E-value=32 Score=36.71 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999887652 253 47889988643
No 396
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=45.18 E-value=4.1e+02 Score=28.35 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeecc--CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 007724 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND--DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (591)
Q Consensus 262 idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND--DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GA 339 (591)
+.+.+..+ .+| .++++ +-.+.. ...+.+.+| .++||.|- +..--=.=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~vl-s~y-~D~iv-iR~~~~-~~~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTL-SGY-SDAIV-IRHPLE-GAARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHH-HHh-CCEEE-EECCch-hHHHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 34444433 456 44444 444443 333444555 47999995 333444556777777666666 699999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-cC---CCCCHHHHhcccCCcEE
Q 007724 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTIL 415 (591)
Q Consensus 340 GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~~---~~~~L~e~V~~vkPtvL 415 (591)
|.=+ -+++-++.++.+ .|+ ++.++-.+|+- +++.....++. +. -..++.++++. .||+
T Consensus 159 ~~~~-~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKYG-RTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCCC-cHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 6311 345555555554 475 57888777661 22222223322 11 13689999997 9999
Q ss_pred EeccCC
Q 007724 416 IGSSGV 421 (591)
Q Consensus 416 IG~S~~ 421 (591)
.-.+-+
T Consensus 221 yt~~~~ 226 (301)
T TIGR00670 221 YVTRIQ 226 (301)
T ss_pred EECCcc
Confidence 987754
No 397
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=44.94 E-value=1.8e+02 Score=29.17 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=28.2
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
.+.+.++. .|++|..|... .|.-.++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 45566665 78889887754 48889999998 4778885
No 398
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=44.93 E-value=27 Score=37.41 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=26.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
...|+|+|||.||+-.|-+|.. .|+ ++.++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 4579999999999988887765 375 57777776
No 399
>PLN02463 lycopene beta cyclase
Probab=44.76 E-value=25 Score=39.23 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999987754 364 57777764
No 400
>PLN02676 polyamine oxidase
Probab=44.74 E-value=56 Score=36.73 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
...+++|+|||.+|+..|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35579999999999999998875
No 401
>PRK06182 short chain dehydrogenase; Validated
Probab=44.66 E-value=53 Score=32.79 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=38.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhh---hh-hccccCCCCCHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---KP-WAHEHEPVNNLLD 405 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k---~~-fA~~~~~~~~L~e 405 (591)
+..+++|.||++ ||...++..+.+ .| -++++++++- +.+.+.. .. +.-|..+..++.+
T Consensus 2 ~~k~vlItGasg---giG~~la~~l~~-~G-------~~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~~ 63 (273)
T PRK06182 2 QKKVALVTGASS---GIGKATARRLAA-QG-------YTVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIKA 63 (273)
T ss_pred CCCEEEEECCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHHH
Confidence 457899999732 333344444443 36 3677776531 1121111 11 1112222235556
Q ss_pred Hhccc-----CCcEEEeccCCC
Q 007724 406 AVKVI-----KPTILIGSSGVG 422 (591)
Q Consensus 406 ~V~~v-----kPtvLIG~S~~~ 422 (591)
+++.+ ++|+||=..+..
T Consensus 64 ~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 64 AVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHhcCCCCEEEECCCcC
Confidence 66644 799999777653
No 402
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=44.59 E-value=3.7e+02 Score=27.60 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=27.4
Q ss_pred CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 007724 426 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 462 (591)
Q Consensus 426 t~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w 462 (591)
+++.++.+++..+.|+++-++.... +.++++.-++
T Consensus 184 ~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l 218 (243)
T cd00377 184 DPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL 218 (243)
T ss_pred CHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC
Confidence 7788888888888999887655442 6889988876
No 403
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=44.50 E-value=29 Score=38.16 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=27.3
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 345799999999999998887753 25 368888875
No 404
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=44.48 E-value=28 Score=36.44 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (591)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999987764 25 36888888654
No 405
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=44.28 E-value=25 Score=38.42 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (591)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 479999999999999988764
No 406
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=43.94 E-value=35 Score=36.05 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-..++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345799999999999998887764 25 468889875
No 407
>PRK14852 hypothetical protein; Provisional
Probab=43.91 E-value=23 Score=43.54 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 478999999999998888888888764 87 799999987
No 408
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=43.88 E-value=24 Score=37.09 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.7
Q ss_pred EEEeCcChHHHHHHHHHHHH
Q 007724 334 FLFLGAGEAGTGIAELIALE 353 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~ 353 (591)
|+|+|||.||+..|-.|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999888753
No 409
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=43.86 E-value=29 Score=36.89 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=25.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999877654 375 56777754
No 410
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=43.74 E-value=59 Score=33.56 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=49.5
Q ss_pred cceEEEeCcChHHHHHHHH-HHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcc
Q 007724 331 EHRFLFLGAGEAGTGIAEL-IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~l-l~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (591)
--||.|+|+| |++.. ...++.+..+. ..-+.++|++ .+......+.|--. .-..++.|.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~-------~~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD-------PERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC-------HHHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 3589999998 44432 33333321110 1334455553 11122333333211 245789999999
Q ss_pred cCCcEEEeccCCCCCCCHHHHHH-HHc----CCCCcEEE
Q 007724 410 IKPTILIGSSGVGRTFTKEVIEA-MAS----FNEKPLIL 443 (591)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~-Ma~----~~erPIIF 443 (591)
-++|+++ ..++. .+.-+++.+ +.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7788877 44533 456666543 432 56787654
No 411
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=43.73 E-value=1.4e+02 Score=33.78 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=63.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc--CCCCCHHH
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLD 405 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~--~~~~~L~e 405 (591)
.+.++||+++|-|-.|+++|+.|.+. | -++++.|.+=. ......++...+. -......+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~~~-------~~~~~~~~~~~~~i~~~~g~~~~ 64 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDRPA-------PEGLAAQPLLLEGIEVELGSHDD 64 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCCCC-------ccchhhhhhhccCceeecCccch
Confidence 34589999999999999999988753 6 46888886411 1111111111110 01111111
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc-CCcEEEecCCCCCcceeCCee
Q 007724 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNGKV 484 (591)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt-~GraifAsGSPF~pv~~~G~~ 484 (591)
...-..|++|=--|.+ .-++.|.++-+. .-||| +.-|-++... ....|-.||| ||||
T Consensus 65 -~~~~~~d~vV~SPGi~-~~~p~v~~A~~~--gi~i~-----------~dieL~~r~~~~~p~vaITGT-------NGKT 122 (448)
T COG0771 65 -EDLAEFDLVVKSPGIP-PTHPLVEAAKAA--GIEII-----------GDIELFYRLSGEAPIVAITGT-------NGKT 122 (448)
T ss_pred -hccccCCEEEECCCCC-CCCHHHHHHHHc--CCcEE-----------eHHHHHHHhcCCCCEEEEECC-------CchH
Confidence 2223367777554555 245555555443 33333 3344555543 4566667886 7775
Q ss_pred eC
Q 007724 485 FV 486 (591)
Q Consensus 485 ~~ 486 (591)
-+
T Consensus 123 TT 124 (448)
T COG0771 123 TT 124 (448)
T ss_pred HH
Confidence 43
No 412
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=43.64 E-value=29 Score=38.80 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
+++++|||+|+|..|+-||..|... .++++++.+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 6899999999999999999887653 26788876654
No 413
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.53 E-value=34 Score=40.39 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=29.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+-.+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 34678999999999999999988653 63 68889874
No 414
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=43.50 E-value=35 Score=35.37 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=30.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-h---cCeEEEEcCCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-T---RKKICLVDSKG 376 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee-A---~~~i~lvD~~G 376 (591)
+..||+++|+|.-|.-+++.|+.. |+...+ . --+|.++|.+=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-----G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-----HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-----cccccccCCCCCCEEEEECCCE
Confidence 467999999999999999999875 321100 0 02899999873
No 415
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=43.48 E-value=35 Score=36.75 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=25.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCccc
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~ 379 (591)
|+|+|||.||+.+|-.|.+. ..| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCCC
Confidence 79999999999999877643 124 3577777754333
No 416
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=43.45 E-value=35 Score=35.37 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=25.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (591)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 345789999999999999877664 64 68888876333
No 417
>PRK12831 putative oxidoreductase; Provisional
Probab=43.43 E-value=30 Score=38.45 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=27.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-...+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 3567999999999999999888753 6 367888864
No 418
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=43.42 E-value=29 Score=39.48 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=26.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+-.|+|+|+|..|++||..+... |+ ++.|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999988752 64 67888875
No 419
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=43.27 E-value=29 Score=42.94 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-+.+||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4578999999999999999988652 63 57888865
No 420
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=43.25 E-value=28 Score=38.13 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999887765 36 478899975
No 421
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=43.21 E-value=20 Score=31.56 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=26.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
+|++.++|++|+|..|.-=+++|+++ | -++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999998777777542 4 4788777753
No 422
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=43.06 E-value=29 Score=32.85 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=25.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+++++|+|+|+|..|+-+|..|... | +++.++-++
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~-----g-------~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKA-----G-------KSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTT-----C-------SEEEEEESS
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhh-----C-------CEEEEEecC
Confidence 67789999999999999888776542 3 577766543
No 423
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=42.92 E-value=45 Score=35.69 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=49.1
Q ss_pred CCCchhHHHHHHHHHH-HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcC
Q 007724 306 DIQGTASVVLAGVVAA-LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 384 (591)
Q Consensus 306 DiQGTaaV~LAgll~A-~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~ 384 (591)
+..+.-+=-+|.-+.+ ....+.+..+ +++|+|+|+.|+..+.+. +..|. ++|+++|.. .+|
T Consensus 144 ~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 144 EEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred hhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCCC----HHH--
Confidence 3344333344444334 2223333333 999999999997663322 22464 789988763 222
Q ss_pred CCchhhhhhccc--cCCCC-CHHHHh----cccCCcEEEeccC
Q 007724 385 SLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSG 420 (591)
Q Consensus 385 ~l~~~k~~fA~~--~~~~~-~L~e~V----~~vkPtvLIG~S~ 420 (591)
|+-.++.++-+ ..... ...+.+ ..-..|+.|=+|+
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 33333323221 01111 222333 2235899999998
No 424
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.92 E-value=62 Score=37.94 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=51.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
.||.|+|+|..|..+|..+... |. ..+++.+|++ .+ .+...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~---~~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AK---SLELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hh---HHHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 2468888874 11 1111110 10000122356666653
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcC
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 446 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLS 446 (591)
+|++| ++..+ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44433 24667777776542 333444343
No 425
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.87 E-value=92 Score=34.19 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=63.2
Q ss_pred ccc-ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHh
Q 007724 329 LAE-HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (591)
Q Consensus 329 l~d-~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V 407 (591)
++. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+...+ .+. +.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~~-~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WNL-EWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CCh-HHh
Confidence 344 6899999999999999988753 22 025777886421 000001211 11111110 011 234
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007724 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~ 485 (591)
. ++|.+|=.++.+ --++++.++.. ..-||+ +.+|. ++.+.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777555665 34666666654 346764 33333 333445678888997 67654
No 426
>PRK07589 ornithine cyclodeaminase; Validated
Probab=42.80 E-value=2.6e+02 Score=30.51 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=64.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc---CCCCCHHHHh
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 407 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~---~~~~~L~e~V 407 (591)
-.++.|+|+|.-+.--++.++.. ..+ ++|+++|+. .+ ..+.+...+.+.. ....++++++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~---~a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PA---ATAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HH---HHHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 47899999999887776666553 133 788888663 11 1223333332211 1236899999
Q ss_pred cccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 007724 408 KVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (591)
Q Consensus 408 ~~vkPtvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 458 (591)
+. .||++-++... -+|..+.++. .--|-++ |+--.+-|+.++-
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 87 99999876422 3688887752 2235554 4544678999874
No 427
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.72 E-value=27 Score=39.06 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
..|||+|+|.+|+++|..+.. .|+ ++.|++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 479999999999999998865 375 588898763
No 428
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=42.65 E-value=1.8e+02 Score=31.67 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=81.0
Q ss_pred HHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeecc-CCCchhHHHHHHHHHHHHHhC-CCcccceEEEeCcChHHHHHH
Q 007724 270 KQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIA 347 (591)
Q Consensus 270 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~A~r~~g-~~l~d~riv~~GAGsAg~GIA 347 (591)
-.+| .++++ +-.+. +-+.+.+.+| .++||+|- |-..--.=+||=++.-.+..| +++++.+|.++|-+.- +++
T Consensus 97 ls~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~ 170 (336)
T PRK03515 97 LGRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMG 170 (336)
T ss_pred HHHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHH
Confidence 3456 45444 33333 3334444454 47899993 334455667888888877776 4799999999998633 477
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-c---CCCCCHHHHhcccCCcEEEecc
Q 007724 348 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (591)
Q Consensus 348 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG~S 419 (591)
+-++.++.+ .|+ ++.++-.+|+.-.. .+-..-+.+++. + .-..++.|+++. .||+.-.+
T Consensus 171 ~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 171 NSLLEAAAL-TGL-------DLRLVAPKACWPEA---ALVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred HHHHHHHHH-cCC-------EEEEECCchhcCcH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecC
Confidence 777776655 474 68888887773321 111111233332 1 123689999997 99999764
No 429
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=42.45 E-value=27 Score=37.04 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977653 364 578888753
No 430
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=42.42 E-value=66 Score=36.69 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=62.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc-C---CCCCHHHHhc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVK 408 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~-~---~~~~L~e~V~ 408 (591)
+|-|+|-|..|.++|.-|+.. |. ++++.|+. .++ .+++...++... . ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 699999999999999998753 64 67777763 221 223322222211 1 3468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 007724 409 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (591)
Q Consensus 409 ~v-kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (591)
.+ +|+++| ++=..+.-.++|+..+... .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 54 588888 4444555566776554433 4677999999854
No 431
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=42.23 E-value=31 Score=39.97 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 589999999999999998865 363 699999874
No 432
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=42.22 E-value=73 Score=38.52 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=64.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc--cCCCCCHHH
Q 007724 331 EHRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLD 405 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~---~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~--~~~~~~L~e 405 (591)
..+|.++|-|..|.|++++|.+. +.++.|+.. +=.-+.|++|.+.+.+.-++..+...|... ..+...+.|
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e 533 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFL 533 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHH
Confidence 46899999999999999999874 222234321 113457998888776632223333333321 122345667
Q ss_pred HhcccCCc--EEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 007724 406 AVKVIKPT--ILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (591)
Q Consensus 406 ~V~~vkPt--vLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (591)
.+....++ |+|=+++.. -....+.+++. +...+|-|
T Consensus 534 ~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVta 571 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVISA 571 (810)
T ss_pred HHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEcC
Confidence 77766665 888888632 24455667776 35666654
No 433
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=42.17 E-value=28 Score=36.81 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877653 364 58888875
No 434
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=42.14 E-value=75 Score=30.69 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=23.9
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+...+++|.|| |..|..+++.+.+ .| -+++++++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356779999996 5566666665543 25 268888764
No 435
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.12 E-value=74 Score=31.26 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=23.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+++.+++|.||++ ||...++..+.+ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~---giG~~ia~~l~~-~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASS---GIGRAAAKLFAR-EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 46778999999853 344444444444 363 57877764
No 436
>PRK07890 short chain dehydrogenase; Provisional
Probab=42.07 E-value=65 Score=31.51 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=24.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+++.+++|.||++ ||...|+..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999844 555556665554 363 68888863
No 437
>PRK07588 hypothetical protein; Provisional
Probab=42.06 E-value=31 Score=36.64 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (591)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999987764
No 438
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=42.01 E-value=33 Score=39.95 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
...||+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45799999999999999988864 253 57778764
No 439
>PRK08244 hypothetical protein; Provisional
Probab=41.99 E-value=30 Score=38.31 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (591)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 469999999999999988765
No 440
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=41.95 E-value=28 Score=36.21 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=23.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999987764 364 566777663
No 441
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=41.83 E-value=38 Score=30.92 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888652 4 4688888765
No 442
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=41.82 E-value=16 Score=39.75 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh---cCCChhhhcC----eEEEEcCCCcc
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQ---TKAPVEETRK----KICLVDSKGLI 378 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~---~G~s~eeA~~----~i~lvD~~GLv 378 (591)
++|+|+|||-||+..|..|.++-... .-++.=||+. +++-+...|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999987642100 0245566665 35544444543
No 443
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=41.81 E-value=30 Score=37.87 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (591)
.++|+|||-+|.=||+.+.+ .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994432 35 788888876443
No 444
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=41.81 E-value=26 Score=39.01 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999998886532 1 2368889885
No 445
>PRK08013 oxidoreductase; Provisional
Probab=41.73 E-value=31 Score=36.95 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=24.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+-.|+|+|||.+|.-.|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3579999999999999877654 375 46677764
No 446
>PRK06185 hypothetical protein; Provisional
Probab=41.69 E-value=30 Score=36.76 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
+..|+|+|||.+|...|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999877654 365 567777753
No 447
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=41.58 E-value=26 Score=37.43 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999987754 365 57777765
No 448
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=41.55 E-value=32 Score=37.52 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (591)
.++|+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999887642 6 47889998
No 449
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.52 E-value=26 Score=38.63 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=57.1
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc----
Q 007724 320 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 395 (591)
Q Consensus 320 ~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~---- 395 (591)
.++.-....|+..|+.|+|-..-.+++++.|.+ .|+.. ..+ ++........+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~~------~~~~~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VHV------LTGNGGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EEE------EeCCCCHHHHHHHHHHHhhcCC
Confidence 334344456788999999988899999998874 38732 111 111111101111111111
Q ss_pred -------ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 007724 396 -------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (591)
Q Consensus 396 -------~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (591)
...+...+++.++..+||++||-|. . +.+|+...-|.| ..+.|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~-----~----~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY-----G----KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECcc-----H----HHHHHHhCCCEE-EeeCCc
Confidence 1122345788889999999999774 1 233433355653 555554
No 450
>PRK08219 short chain dehydrogenase; Provisional
Probab=41.25 E-value=1.1e+02 Score=29.24 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCHHHHhccc-CCcEEEeccCCC
Q 007724 401 NNLLDAVKVI-KPTILIGSSGVG 422 (591)
Q Consensus 401 ~~L~e~V~~v-kPtvLIG~S~~~ 422 (591)
.++.++++.+ ++|++|-+.+..
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 60 EAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 4566666654 689999887764
No 451
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=41.20 E-value=65 Score=33.64 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=55.0
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcc-ccCCCCCHHHH
Q 007724 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (591)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~-~~~~~~~L~e~ 406 (591)
+++.+|+|.|| |..|..+++.|++. |- -.+++++|++..-.......+...+..|.. |-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 66676676666542 31 136888876422100000001000111111 22222457777
Q ss_pred hcccCCcEEEeccCCCCC----C------------CHHHHHHHHcCCCCcEEEEcC
Q 007724 407 VKVIKPTILIGSSGVGRT----F------------TKEVIEAMASFNEKPLILALS 446 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~g~----F------------t~evv~~Ma~~~erPIIFaLS 446 (591)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 765 8999977654321 1 235666776655567888544
No 452
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=41.01 E-value=1.3e+02 Score=26.91 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCC
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSN 447 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSN 447 (591)
+.|++|++|-.|. |+|+++.+. +...-||| ++++
T Consensus 43 ~~dl~I~iS~SG~--t~e~i~~~~~a~~~g~~iI-~IT~ 78 (119)
T cd05017 43 RKTLVIAVSYSGN--TEETLSAVEQAKERGAKIV-AITS 78 (119)
T ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4689999999775 999998864 33344555 5554
No 453
>PRK06841 short chain dehydrogenase; Provisional
Probab=40.95 E-value=48 Score=32.47 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=23.2
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
++++.+++|.|| |..|..+|+.+ .+ .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l----~~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELF----AA-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 467889999998 44444455544 33 363 57777764
No 454
>PRK08339 short chain dehydrogenase; Provisional
Probab=40.94 E-value=94 Score=31.19 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 327 GTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 327 ~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+|++++++|.||++ .|..+|+.+ .+ .|. ++.++|++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l----~~-~G~-------~V~~~~r~ 41 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVL----AR-AGA-------DVILLSRN 41 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 357888999999853 444444444 43 363 57888764
No 455
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=40.90 E-value=27 Score=34.41 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=22.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+.+.+++|.||.+ ||...|+..+.+ .|. ++.++|++
T Consensus 3 ~l~~~~vlItGas~---~iG~~ia~~l~~-~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAAS---GIGEAVAERYLA-EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-cCC-------EEEEEcCC
Confidence 46788999999732 334444444444 363 57788764
No 456
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=40.80 E-value=34 Score=36.40 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+|+|+|||-+|+.+|..+.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999987754 25 368888885
No 457
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.72 E-value=35 Score=36.45 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.7
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007724 331 EHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (591)
..+|+|+|||.||+-.|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 3679999999999999887754
No 458
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=40.62 E-value=33 Score=35.33 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (591)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999877653 25 468888887543
No 459
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=40.59 E-value=34 Score=37.67 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=25.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
|++|+|+|+||...|..+.+ .| .++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999887765 26 479999975
No 460
>PRK14694 putative mercuric reductase; Provisional
Probab=40.52 E-value=36 Score=37.55 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999887653 5 478899974
No 461
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=40.46 E-value=1.1e+02 Score=31.83 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=46.6
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc-cCCCcCCCch------hhhhhcc-ccC
Q 007724 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQH------FKKPWAH-EHE 398 (591)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv-~~~r~~~l~~------~k~~fA~-~~~ 398 (591)
.++..+++|.|| |-.|..+++.|.. .|. +++.+|+..-- ...+-..+.. .+..|-. +..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 466789999997 7778777777764 263 57777654210 0000000100 0111111 222
Q ss_pred CCCCHHHHhcccCCcEEEeccCC
Q 007724 399 PVNNLLDAVKVIKPTILIGSSGV 421 (591)
Q Consensus 399 ~~~~L~e~V~~vkPtvLIG~S~~ 421 (591)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888899999988775
No 462
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=40.37 E-value=35 Score=37.59 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.-.+||+|+|+||...|..+.+. | .++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34799999999999998877652 6 579999975
No 463
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.20 E-value=42 Score=38.23 Aligned_cols=79 Identities=10% Similarity=0.260 Sum_probs=47.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc---cCCCCCH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~---~~~~~~L 403 (591)
..|...|++|+|-++-..|+++.+... .|+. +..++.. .....+.+.+.-+.+... .++...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 678899999999999999999988765 3873 2233321 000000011111111110 1222457
Q ss_pred HHHhcccCCcEEEecc
Q 007724 404 LDAVKVIKPTILIGSS 419 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S 419 (591)
.+.|+..+|+++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 7889999999999966
No 464
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=40.20 E-value=74 Score=33.30 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=47.3
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc-------CCCC
Q 007724 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-------EPVN 401 (591)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~-------~~~~ 401 (591)
..-+||++.. ++.++|-+- .+|.. .|+ +++++|+.+ . .+++.-..+|... .-..
T Consensus 3 ~~i~iVLVep~~~gNIG~vA---RaMKN-fGl------~eL~LV~Pr-------~-~~~eeA~a~A~gA~dile~A~i~~ 64 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSVA---RAMKN-FGL------SELRLVNPR-------A-GLDEEARALAAGARDILENAKIVD 64 (242)
T ss_pred CccEEEEEcCCCCccHHHHH---HHHHh-CCc------ceEEEECCC-------C-CCCHHHHHHhccchhhhccCeeec
Confidence 3456777754 556666543 44443 598 569998875 2 2445554555321 2236
Q ss_pred CHHHHhcccCCcEEEeccCCCC
Q 007724 402 NLLDAVKVIKPTILIGSSGVGR 423 (591)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g 423 (591)
||.|+|.. .+.+||+|+-..
T Consensus 65 tL~eAl~d--~~~v~aTtar~r 84 (242)
T COG0565 65 TLEEALAD--CDLVVATTARSR 84 (242)
T ss_pred CHHHHhcC--CCEEEEeccccC
Confidence 99999997 999999997554
No 465
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=40.13 E-value=21 Score=39.15 Aligned_cols=138 Identities=19% Similarity=0.312 Sum_probs=74.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh-----cCeEEEEcCCCccc--CCCc--CCCchhhhhhccc----
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET-----RKKICLVDSKGLIV--SSRK--DSLQHFKKPWAHE---- 396 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA-----~~~i~lvD~~GLv~--~~r~--~~l~~~k~~fA~~---- 396 (591)
+..+++++|.|++|+|+|..+..-+-+. .+-.-|- .+-.|-+=--||-. ++|. .+|-+-...|-++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCC-ceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHh
Confidence 5789999999999999999987755331 1111111 12234333345432 2222 1233333333221
Q ss_pred ------------c------------------CCCCCHHHHhcccCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEEc
Q 007724 397 ------------H------------------EPVNNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILAL 445 (591)
Q Consensus 397 ------------~------------------~~~~~L~e~V~~vkPtvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaL 445 (591)
+ ..++.|.|+++. | |+.+.-.-| -+.+-++.-..++.-.||..
T Consensus 117 f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~t--P----~VcSnYSpkyvdk~y~~~~~fk~GNAIfTf 190 (446)
T KOG3851|consen 117 FNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDT--P----GVCSNYSPKYVDKVYKELMNFKKGNAIFTF 190 (446)
T ss_pred cCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccC--C----CcccccChHHHHHHHHHHHhccCCceEEec
Confidence 0 112378888887 6 333321112 23444555567788899999
Q ss_pred CCCCCCCCCCHHHHh-------cc----cCCcEEEecCCC
Q 007724 446 SNPTSQSECTAEEAY-------TW----SKGRAIFASGSP 474 (591)
Q Consensus 446 SNPt~~aEct~edA~-------~w----t~GraifAsGSP 474 (591)
-|-.-||---|+-+. .. ++-..||+|+-|
T Consensus 191 PntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~ 230 (446)
T KOG3851|consen 191 PNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLP 230 (446)
T ss_pred CCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcc
Confidence 884434443443322 11 344679999866
No 466
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=40.12 E-value=46 Score=37.30 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
.|.+.|++|+|-++-.+|+++.+.+
T Consensus 309 ~l~Gkrvai~~~~~~~~~l~~~l~e 333 (461)
T TIGR02931 309 FLADKRVAIYGNPDLVIGLAEFCLD 333 (461)
T ss_pred HhCCCeEEEEeCHHHHHHHHHHHHH
Confidence 4678999999999999999998874
No 467
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=40.11 E-value=2.6e+02 Score=26.58 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=48.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhccc
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (591)
...++++|...... ++.+.. .|. +++|++|...+-.. + -..|+ .-|.+++++.
T Consensus 30 ~v~~v~~G~~~~~~--~~~~~~-----~Ga------d~v~~~~~~~~~~~------~--~~~~a------~al~~~i~~~ 82 (168)
T cd01715 30 EVTALVIGSGAEAV--AAALKA-----YGA------DKVLVAEDPALAHY------L--AEPYA------PALVALAKKE 82 (168)
T ss_pred CEEEEEECCChHHH--HHHHHh-----cCC------CEEEEecChhhccc------C--hHHHH------HHHHHHHHhc
Confidence 35778888876653 333322 375 78998865433110 0 11232 3488889988
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 007724 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (591)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (591)
+|++++.-++. +..++--.+|..-.-|++
T Consensus 83 ~p~~Vl~~~t~---~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 83 KPSHILAGATS---FGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred CCCEEEECCCc---cccchHHHHHHHhCCCce
Confidence 99988866653 455666666654455554
No 468
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=39.97 E-value=37 Score=37.08 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999877642 5 578889983
No 469
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=39.88 E-value=29 Score=40.31 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=29.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC-cccCCCc
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRK 383 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G-Lv~~~r~ 383 (591)
++..|+|+|||.||+-.|-.|... .|+ ++.++|++- ....+|.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA 74 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQA 74 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCee
Confidence 356899999999999998887641 265 467788763 3333443
No 470
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=39.87 E-value=25 Score=40.11 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
..++++||||+|.|..|+-||..|..
T Consensus 179 ~~f~gKrVlVVG~g~Sg~DIa~el~~ 204 (531)
T PF00743_consen 179 EPFKGKRVLVVGGGNSGADIAVELSR 204 (531)
T ss_dssp GGGTTSEEEEESSSHHHHHHHHHHTT
T ss_pred hhcCCCEEEEEeCCHhHHHHHHHHHH
Confidence 45678999999999999999987754
No 471
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.86 E-value=62 Score=35.76 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhh-----
Q 007724 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP----- 392 (591)
Q Consensus 318 ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~----- 392 (591)
+..++.-....|++.|++++|.++-.-.++.++ ++.|+.. ..+ |.-... .++....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~-~~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAH-RDDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCC-HHHHhhHHhhcCCce
Confidence 455666667889999999998776555666533 3358732 111 000000 0001111100
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccC
Q 007724 393 WAHEHEPVNNLLDAVKVIKPTILIGSSG 420 (591)
Q Consensus 393 fA~~~~~~~~L~e~V~~vkPtvLIG~S~ 420 (591)
..-+..+...+++.++..+||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 1011122346888999999999998765
No 472
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.84 E-value=1.4e+02 Score=27.18 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=44.0
Q ss_pred CCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCee
Q 007724 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 278 (591)
Q Consensus 199 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~l 278 (591)
.|..|-...--+..+-......+|+. |+|-+|||. .++ +.+-++|.+-+.+|++.++..+ |++.
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~ND------~~~------~~~~~~~~~~~~~~i~~i~~~~-p~~~ 81 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTND------LVL------NRDPDTAPDRLRALIDQMRAAN-PDVK 81 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCcc------ccc------CCCHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 34444444444444434455566654 678889973 332 2567899999999999999988 8776
Q ss_pred eeee
Q 007724 279 IQFE 282 (591)
Q Consensus 279 IqfE 282 (591)
|-|-
T Consensus 82 ii~~ 85 (157)
T cd01833 82 IIVA 85 (157)
T ss_pred EEEE
Confidence 6553
No 473
>PLN02342 ornithine carbamoyltransferase
Probab=39.75 E-value=3.9e+02 Score=29.27 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=80.6
Q ss_pred HHHhhCCCeeeeeecCCCccHHHHHHHHcCCCeeecc-CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHH
Q 007724 269 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 347 (591)
Q Consensus 269 v~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA 347 (591)
+-.+| .++++ +-.+ .+.+.+.+.+| .++||.|- |-..-=.=+|+=++.-.+..| ++++.||+++|-+. -++
T Consensus 136 vLs~y-~D~Iv-iR~~-~~~~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~---nva 207 (348)
T PLN02342 136 VLSRY-NDIIM-ARVF-AHQDVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGN---NIV 207 (348)
T ss_pred HHHHh-CCEEE-EeCC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCc---hhH
Confidence 34556 55555 2222 23344555555 47899993 333455667888777766666 69999999999874 388
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccc-----cCCCCCHHHHhcccCCcEEEecc
Q 007724 348 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----HEPVNNLLDAVKVIKPTILIGSS 419 (591)
Q Consensus 348 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-----~~~~~~L~e~V~~vkPtvLIG~S 419 (591)
+-++.++.+ .|+ ++.++-.+|+.-. +.....+++ -....++.|+|+. .||+.-.+
T Consensus 208 ~Sli~~~~~-~G~-------~v~~~~P~~~~~~-------~~~~~~a~~~g~~~~~~~~d~~eav~~--aDVvy~~~ 267 (348)
T PLN02342 208 HSWLLLAAV-LPF-------HFVCACPKGYEPD-------AKTVEKARAAGISKIEITNDPAEAVKG--ADVVYTDV 267 (348)
T ss_pred HHHHHHHHH-cCC-------EEEEECCcccccC-------HHHHHHHHHhCCCcEEEEcCHHHHhCC--CCEEEECC
Confidence 888777765 475 5888888877322 111112221 1123689999997 99999875
No 474
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.74 E-value=37 Score=37.85 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
++++||+|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 475
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=39.71 E-value=2.5e+02 Score=29.88 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=73.1
Q ss_pred cHHHHHHHHcCCCeeecc-CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007724 288 NAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (591)
Q Consensus 288 ~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (591)
.+.+.+.+| .++|++|- |-..--.=+|+=++.-.+..| .+++.||.++|-.+ -+++-++.++.+ .|+
T Consensus 106 ~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------ 173 (304)
T TIGR00658 106 EDVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------ 173 (304)
T ss_pred HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC------
Confidence 344455555 46899994 333344557777777766666 49999999999863 478888777765 464
Q ss_pred CeEEEEcCCCcccCCCcCCCchhhhhhccc-c---CCCCCHHHHhcccCCcEEEecc
Q 007724 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (591)
Q Consensus 367 ~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG~S 419 (591)
++.++-.+++.-.. .+.+.-+.+++. + ....++.++++. .||+.-.+
T Consensus 174 -~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 -DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred -EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 111112233332 1 123689999997 99998754
No 476
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=39.66 E-value=38 Score=37.93 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
...+++|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 45799999999999999988764 253 58888865
No 477
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=39.61 E-value=25 Score=43.30 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
++|++.+|+|+|+|.-|+=||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 467889999999999999999999875 87 8999999873
No 478
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.52 E-value=17 Score=43.76 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=69.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhcccc--CC--CCC
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP--VNN 402 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~--~~--~~~ 402 (591)
++|.++++.++|||+.||-.-+-++.. |+.--+- ..|.+.|-+ +|.++ +|+. |--| |+. .. ...
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTDmD-~IEkS---NLnR-QFLF-R~~dVgk~KSe~ 493 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTDMD-HIEKS---NLNR-QFLF-RPWDVGKPKSEV 493 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEeccc-hhhhc---cccc-eeec-cccccCchHHHH
Confidence 678999999999999998666655432 6532211 246666654 33332 2442 2122 221 11 124
Q ss_pred HHHHhcccCCcEEE-------eccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 007724 403 LLDAVKVIKPTILI-------GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 469 (591)
Q Consensus 403 L~e~V~~vkPtvLI-------G~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~Graif 469 (591)
-.+|+....|++.| |-.+ -++|+.+--+.+- =++=||=|= ||-.|-|+||+|
T Consensus 494 AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 494 AAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHHhhcch---------hhhhhhhhhhhh
Confidence 67889999999987 3333 3578887766552 123344442 577788888887
No 479
>PRK06834 hypothetical protein; Provisional
Probab=39.51 E-value=37 Score=38.00 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
.+..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 46789999999999999988765 375 467777653
No 480
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=39.49 E-value=36 Score=36.44 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3579999999999999977644 375 46777764
No 481
>PRK07538 hypothetical protein; Provisional
Probab=39.43 E-value=35 Score=36.74 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.2
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007724 333 RFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (591)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999999888877654
No 482
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=39.43 E-value=37 Score=37.19 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=22.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcc
Q 007724 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (591)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (591)
|||+|+|.||+.-|-..+. .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888765544 37 478999998865
No 483
>PRK10262 thioredoxin reductase; Provisional
Probab=39.41 E-value=29 Score=35.87 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007724 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (591)
-+..+|+|+|||.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999887764
No 484
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.33 E-value=29 Score=39.68 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=50.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCC---CCCH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNL 403 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~---~~~L 403 (591)
..+++-||+++|||-.|+-.-+.|+. .|+ +.|.++|.+-+=.+ +|+ .|--|-+++-. ...-
T Consensus 8 eai~~~riLvVGaGGIGCELLKnLal-----~gf------~~IhiIDlDTIDlS----NLN-RQFLFrkkhVgqsKA~vA 71 (603)
T KOG2013|consen 8 EAIKSGRILVVGAGGIGCELLKNLAL-----TGF------EEIHIIDLDTIDLS----NLN-RQFLFRKKHVGQSKATVA 71 (603)
T ss_pred HHhccCeEEEEecCcccHHHHHHHHH-----hcC------CeeEEEeccceecc----chh-hhheeehhhcCchHHHHH
Confidence 34578999999999888776666654 376 78999999743111 233 23233333211 1346
Q ss_pred HHHhcccCCcEEEeccCCCCCC
Q 007724 404 LDAVKVIKPTILIGSSGVGRTF 425 (591)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~F 425 (591)
.++|++..|.+=| ++=++.++
T Consensus 72 ~~~v~~Fnpn~~l-~~yhanI~ 92 (603)
T KOG2013|consen 72 AKAVKQFNPNIKL-VPYHANIK 92 (603)
T ss_pred HHHHHHhCCCCce-Eecccccc
Confidence 6888888887765 33334343
No 485
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=39.33 E-value=35 Score=35.72 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 48999999999999988864 25 358888875
No 486
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.27 E-value=90 Score=32.16 Aligned_cols=150 Identities=17% Similarity=0.286 Sum_probs=84.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHH
Q 007724 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (591)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~ 406 (591)
.-.+-.++||+|+=--|.-+|++|..+ .+++++|-+ ++.+.|-...-....+.--
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~~-------------~~vtv~Di~------------p~~r~~lp~~v~Fr~~~~~ 95 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSKA-------------DKVTVVDIH------------PFMRGFLPNNVKFRNLLKF 95 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhccc-------------ceEEEecCC------------HHHHhcCCCCccHhhhcCC
Confidence 345567999999999998888877432 679999864 2222232211111111111
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeC
Q 007724 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 486 (591)
Q Consensus 407 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraifAsGSPF~pv~~~G~~~~ 486 (591)
++. .-|++|-++|-|| .++++++.. .|=+|-.-||++ -..-++.|.+.+ |---..+++-+=+
T Consensus 96 ~~G-~~DlivDlTGlGG-~~Pe~L~~f-----np~vfiVEdP~g--n~~D~~I~eyn~------T~eRlea~ee~~k--- 157 (254)
T COG4017 96 IRG-EVDLIVDLTGLGG-IEPEFLAKF-----NPKVFIVEDPKG--NVFDVDIYEYNN------TYERLEAFEEKAK--- 157 (254)
T ss_pred CCC-ceeEEEeccccCC-CCHHHHhcc-----CCceEEEECCCC--CCCccchhhcCC------HHHHHHhhHhhhh---
Confidence 111 2377888999887 688888754 467788889984 222223333211 0000000000000
Q ss_pred cCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcc
Q 007724 487 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQ 526 (591)
Q Consensus 487 p~Q~NN~yiFPGlglG~~~s~a~~Itd~m~~aAA~aLA~~ 526 (591)
+-+ =-.+++|=.|+--.+|-+.+..||.+|-+.
T Consensus 158 ------~~l-~~~~~~AKTSGTmTLtv~tir~aa~~le~~ 190 (254)
T COG4017 158 ------VGL-LKTYRKAKTSGTMTLTVDTIRDAARELESL 190 (254)
T ss_pred ------hhh-hhccccccccceEEEEhHHHHHHHHHHhhh
Confidence 000 113566777888889999999999999654
No 487
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=39.14 E-value=36 Score=38.95 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007724 332 HRFLFLGAGEAGTGIAELIAL 352 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (591)
.||+|+|||.+|+..|+.+.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
Confidence 589999999999999998865
No 488
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=39.09 E-value=37 Score=37.03 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999888652 5 468999975
No 489
>PLN02568 polyamine oxidase
Probab=39.06 E-value=19 Score=41.08 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALE 353 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~ 353 (591)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999998764
No 490
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=38.97 E-value=26 Score=32.07 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=24.4
Q ss_pred CChhhhHHHHHHHHHHHHH---hhCCCeeeeeecC
Q 007724 253 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDF 284 (591)
Q Consensus 253 ~~g~~Y~~~idefv~av~~---~fGp~~lIqfEDf 284 (591)
.+.++||.|+|+|+..|.+ .||.....+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 4678999999999998887 4655555666655
No 491
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=38.94 E-value=31 Score=34.18 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=24.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
.+++.++||.||.+ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36788999999753 444455555544 363 58888764
No 492
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=38.88 E-value=85 Score=30.58 Aligned_cols=144 Identities=16% Similarity=0.211 Sum_probs=86.6
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC--ceeecCCCCCCC--ccccchhhHHHHHHhcCCCCCceeeE
Q 007724 153 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 228 (591)
Q Consensus 153 i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPI 228 (591)
+-+++.|+-++..|.....+.++.+...+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 45679999999999998889998888888988887555 111122223332 36666677776666654 345
Q ss_pred EeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCe-eee---eecCCCccHHHHHHHHcCC---Ce
Q 007724 229 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQ---FEDFANHNAFELLAKYGTT---HL 301 (591)
Q Consensus 229 ~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~-lIq---fEDf~~~~Af~lL~ryr~~---~~ 301 (591)
++=.|..+ .....+.++-|.+++++ ++ ++ ++. +.++....+.+.++++-.. -.
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 185 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YP-GVEIVDEYEYTDWDPEDARQAIENLLQANPVDA 185 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CT-TEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cc-eeeeeeeeeccCCCHHHHHHHHHHhhhcCCceE
Confidence 54444221 12333457778888888 63 43 222 2367777777655554322 13
Q ss_pred eeccCCCchhHHHHHHHHHHHHHhCC
Q 007724 302 VFNDDIQGTASVVLAGVVAALKLIGG 327 (591)
Q Consensus 302 ~FNDDiQGTaaV~LAgll~A~r~~g~ 327 (591)
+|. +....+-|++.|++..|+
T Consensus 186 i~~-----~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIA-----CNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEE-----SSHHHHHHHHHHHHHTTC
T ss_pred EEe-----CCChHHHHHHHHHHHcCC
Confidence 332 223344477888888887
No 493
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=38.85 E-value=39 Score=36.06 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
..|+|+|||-+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478899886
No 494
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=38.62 E-value=2.1e+02 Score=29.63 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=27.7
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007724 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (591)
Q Consensus 403 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (591)
+.+.++. .|++|-.|... .|.-.++++|+ +..|||.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 4455655 78888777654 58999999999 6789987
No 495
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=38.35 E-value=75 Score=33.67 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=65.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCCcCCCchhhhhhccccCCCCCHHHHhcccC
Q 007724 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (591)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (591)
+||.++|-|..|--|++.|... +. +..+-.++.|+.. +..+.++...+.+.+|.+.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~-----------~~~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA-----------DLPPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH-----------HHHHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987532 11 1123345555531 112223333345578888653 47
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE---EcCCCCCCCCCCHHHHhcccCCcEEEecC
Q 007724 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL---ALSNPTSQSECTAEEAYTWSKGRAIFASG 472 (591)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF---aLSNPt~~aEct~edA~~wt~GraifAsG 472 (591)
||+++=+.++. ++.+-..+.+.+. ..=+|+ ||+++. =+-.-.++-+-..++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~g-~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTAG-LDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhcC-CCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988854 4444444444322 222222 244443 122223344445678888887
No 496
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=38.32 E-value=1.6e+02 Score=31.96 Aligned_cols=108 Identities=12% Similarity=0.153 Sum_probs=57.4
Q ss_pred hCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCCcccCCC--cCCCch-h-hhhhcc-ccC
Q 007724 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--KDSLQH-F-KKPWAH-EHE 398 (591)
Q Consensus 325 ~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~r--~~~l~~-~-k~~fA~-~~~ 398 (591)
.++..+++||+|.|| |-.|..+++.|++ .|. +++.+++..--.... ...+.. . ...+.. |..
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 121 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVR-----RGY-------NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVT 121 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEEechhhccccchhhHHhhhcCCceEEEeeCC
Confidence 456678899999997 7778777777754 253 577776642100000 000000 0 001111 222
Q ss_pred CCCCHHHHhccc--CCcEEEeccCCC--C---CC------CHHHHHHHHcCCCCcEEEE
Q 007724 399 PVNNLLDAVKVI--KPTILIGSSGVG--R---TF------TKEVIEAMASFNEKPLILA 444 (591)
Q Consensus 399 ~~~~L~e~V~~v--kPtvLIG~S~~~--g---~F------t~evv~~Ma~~~erPIIFa 444 (591)
+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+.
T Consensus 122 d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 122 DADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 234677777765 699998543321 1 11 3456777765554556663
No 497
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.22 E-value=38 Score=35.75 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
...|+|+|||.+|+-.|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999876643 364 577888764
No 498
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=38.20 E-value=14 Score=37.55 Aligned_cols=25 Identities=48% Similarity=0.838 Sum_probs=17.5
Q ss_pred EEEEecCceeecCCCCCCCccccchhhH
Q 007724 184 VIVVTDGERILGLGDLGCQGMGIPVGKL 211 (591)
Q Consensus 184 viVVTDG~rILGLGDlG~~GmgI~iGKl 211 (591)
++|||||+|||-.--. |-.|||-|.
T Consensus 51 ~fi~TDg~~IlavDt~---gy~ipiRKS 75 (214)
T PF12227_consen 51 CFIVTDGERILAVDTI---GYKIPIRKS 75 (214)
T ss_pred eEEEecCCceEEEEec---CCCceeeec
Confidence 8999999999974333 345666554
No 499
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=38.19 E-value=36 Score=42.07 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCC
Q 007724 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (591)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (591)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999988864 263 58888865
No 500
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=38.16 E-value=1.5e+02 Score=28.82 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=24.0
Q ss_pred CcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcCCC
Q 007724 328 TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (591)
Q Consensus 328 ~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (591)
.+++.+++|.||++ .|..+|+.+ .+ .|. ++.++|++-
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l----~~-~G~-------~v~~~~~~~ 42 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAF----VE-AGA-------KVIGFDQAF 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH----HH-CCC-------EEEEEecch
Confidence 47788999999854 454555544 33 363 677777754
Done!