Query 007725
Match_columns 591
No_of_seqs 459 out of 2568
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 14:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.8 1.3E-21 2.9E-26 196.7 6.5 122 99-229 77-198 (304)
2 KOG0543 FKBP-type peptidyl-pro 99.6 6.6E-17 1.4E-21 168.9 0.4 134 99-232 204-343 (397)
3 KOG4626 O-linked N-acetylgluco 99.6 6.4E-16 1.4E-20 166.5 3.3 162 83-254 232-393 (966)
4 KOG4234 TPR repeat-containing 99.6 4E-16 8.6E-21 148.6 -0.2 125 99-227 91-215 (271)
5 KOG0548 Molecular co-chaperone 99.5 4.1E-15 9E-20 159.1 4.5 134 85-227 340-473 (539)
6 KOG0550 Molecular chaperone (D 99.5 9.7E-15 2.1E-19 151.9 5.5 144 83-232 217-372 (486)
7 PRK15359 type III secretion sy 99.5 6.4E-15 1.4E-19 137.3 1.0 114 106-228 27-140 (144)
8 KOG0545 Aryl-hydrocarbon recep 99.5 1.2E-14 2.6E-19 142.3 1.8 161 51-228 143-313 (329)
9 KOG4626 O-linked N-acetylgluco 99.5 1.2E-14 2.6E-19 156.7 0.8 149 83-240 334-482 (966)
10 KOG4648 Uncharacterized conser 99.4 2.1E-14 4.6E-19 146.1 1.9 117 100-225 94-210 (536)
11 KOG0547 Translocase of outer m 99.4 7.5E-14 1.6E-18 147.7 3.2 120 99-227 111-231 (606)
12 PLN03088 SGT1, suppressor of 99.4 5.4E-14 1.2E-18 150.1 1.4 117 105-230 4-120 (356)
13 KOG1308 Hsp70-interacting prot 99.4 1.7E-13 3.7E-18 140.2 3.2 243 97-354 108-370 (377)
14 KOG0548 Molecular co-chaperone 99.4 2.6E-13 5.6E-18 145.5 2.9 112 104-224 3-114 (539)
15 PRK10370 formate-dependent nit 99.3 6.1E-13 1.3E-17 130.6 4.3 132 82-222 52-186 (198)
16 TIGR02552 LcrH_SycD type III s 99.3 3.7E-13 8E-18 122.5 1.3 127 92-227 6-132 (135)
17 KOG0551 Hsp90 co-chaperone CNS 99.3 6.9E-13 1.5E-17 135.0 1.4 109 101-214 79-187 (390)
18 KOG0553 TPR repeat-containing 99.3 1.7E-12 3.8E-17 131.2 4.0 91 151-241 86-176 (304)
19 KOG0624 dsRNA-activated protei 99.3 3.1E-11 6.8E-16 123.3 11.4 115 112-231 278-392 (504)
20 TIGR00990 3a0801s09 mitochondr 99.3 1E-12 2.2E-17 149.9 0.7 150 83-241 345-494 (615)
21 PRK15363 pathogenicity island 99.2 2.8E-12 6E-17 119.9 0.8 116 100-224 32-147 (157)
22 KOG1126 DNA-binding cell divis 99.2 5.4E-12 1.2E-16 138.3 3.0 137 96-241 414-550 (638)
23 PRK09782 bacteriophage N4 rece 99.2 3.7E-12 8E-17 151.0 1.8 141 83-233 590-730 (987)
24 PRK09782 bacteriophage N4 rece 99.2 7.9E-12 1.7E-16 148.2 4.4 184 48-241 521-704 (987)
25 TIGR00990 3a0801s09 mitochondr 99.2 2.9E-12 6.3E-17 146.3 0.4 149 84-241 309-460 (615)
26 PRK11189 lipoprotein NlpI; Pro 99.2 9.8E-12 2.1E-16 129.5 2.6 105 101-214 62-166 (296)
27 KOG0376 Serine-threonine phosp 99.1 2.1E-11 4.5E-16 130.1 3.8 119 103-230 4-122 (476)
28 PRK12370 invasion protein regu 99.1 1E-11 2.3E-16 140.1 1.1 186 43-237 265-464 (553)
29 PRK12370 invasion protein regu 99.1 1.4E-11 3.1E-16 138.9 1.4 145 77-230 269-422 (553)
30 KOG4642 Chaperone-dependent E3 99.1 3.9E-11 8.4E-16 117.6 2.4 116 102-226 9-129 (284)
31 TIGR02521 type_IV_pilW type IV 99.1 3.4E-11 7.4E-16 116.6 2.1 181 43-230 38-219 (234)
32 PRK15174 Vi polysaccharide exp 99.1 3.2E-11 6.9E-16 138.7 1.6 124 107-239 216-343 (656)
33 PRK15174 Vi polysaccharide exp 99.1 4.2E-11 9.1E-16 137.7 1.6 150 83-241 226-379 (656)
34 KOG1126 DNA-binding cell divis 99.0 8.3E-11 1.8E-15 129.1 2.8 147 83-238 469-615 (638)
35 COG3063 PilF Tfp pilus assembl 99.0 1.3E-10 2.9E-15 113.7 3.8 180 43-229 42-222 (250)
36 PRK15359 type III secretion sy 99.0 2.9E-11 6.3E-16 112.7 -1.0 108 122-241 12-119 (144)
37 TIGR02521 type_IV_pilW type IV 99.0 3.9E-11 8.5E-16 116.2 -0.4 147 83-238 45-193 (234)
38 PRK15179 Vi polysaccharide bio 99.0 4.9E-11 1.1E-15 136.7 0.2 141 93-242 76-216 (694)
39 KOG1125 TPR repeat-containing 99.0 1.3E-10 2.8E-15 125.9 2.0 206 36-241 285-525 (579)
40 PRK11189 lipoprotein NlpI; Pro 99.0 1.6E-10 3.6E-15 120.3 2.4 86 86-180 81-166 (296)
41 KOG1125 TPR repeat-containing 98.9 2.2E-10 4.7E-15 124.2 1.8 135 86-229 411-557 (579)
42 PRK11447 cellulose synthase su 98.9 2.1E-10 4.5E-15 140.0 0.8 181 47-236 280-517 (1157)
43 PRK10370 formate-dependent nit 98.9 9.9E-11 2.1E-15 115.0 -2.1 121 114-243 50-173 (198)
44 KOG0550 Molecular chaperone (D 98.9 1.9E-10 4E-15 120.4 -0.6 158 84-241 184-348 (486)
45 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.1E-10 4.5E-15 101.1 -0.4 111 103-219 2-115 (119)
46 COG3063 PilF Tfp pilus assembl 98.9 9.5E-10 2.1E-14 107.8 3.8 144 81-233 47-192 (250)
47 PF13429 TPR_15: Tetratricopep 98.9 1.3E-10 2.7E-15 119.6 -2.5 134 99-241 142-275 (280)
48 KOG1155 Anaphase-promoting com 98.9 6.1E-10 1.3E-14 117.9 2.4 147 87-242 348-494 (559)
49 TIGR02917 PEP_TPR_lipo putativ 98.9 5.2E-10 1.1E-14 129.9 1.5 139 85-233 752-890 (899)
50 PRK11447 cellulose synthase su 98.9 7.7E-10 1.7E-14 135.1 2.1 144 83-226 365-541 (1157)
51 PF13414 TPR_11: TPR repeat; P 98.8 1.4E-10 3E-15 93.5 -3.1 64 148-211 5-69 (69)
52 KOG1173 Anaphase-promoting com 98.8 1.2E-09 2.5E-14 118.2 2.2 140 85-226 396-535 (611)
53 KOG1155 Anaphase-promoting com 98.8 5.4E-10 1.2E-14 118.3 -0.6 130 103-241 330-459 (559)
54 KOG0547 Translocase of outer m 98.8 1.5E-09 3.2E-14 115.6 2.6 211 22-241 345-564 (606)
55 KOG0624 dsRNA-activated protei 98.8 1.2E-09 2.6E-14 112.0 1.5 119 99-226 34-155 (504)
56 PRK02603 photosystem I assembl 98.8 6.7E-10 1.4E-14 106.3 -0.3 109 99-213 31-153 (172)
57 PLN02789 farnesyltranstransfer 98.8 1.9E-09 4.1E-14 113.4 3.0 136 84-228 52-190 (320)
58 cd00189 TPR Tetratricopeptide 98.8 6.2E-10 1.4E-14 90.7 -0.7 99 105-212 2-100 (100)
59 KOG2003 TPR repeat-containing 98.8 2.7E-09 5.8E-14 112.4 3.7 182 41-231 424-609 (840)
60 TIGR02917 PEP_TPR_lipo putativ 98.8 4.6E-09 1E-13 122.0 5.8 182 43-233 63-246 (899)
61 PF13414 TPR_11: TPR repeat; P 98.8 3.5E-10 7.7E-15 91.1 -2.8 67 102-177 2-69 (69)
62 TIGR03302 OM_YfiO outer membra 98.8 8E-10 1.7E-14 110.3 -1.7 146 84-235 48-224 (235)
63 PF12895 Apc3: Anaphase-promot 98.7 7.9E-10 1.7E-14 93.0 -1.8 83 116-206 2-84 (84)
64 PLN02789 farnesyltranstransfer 98.7 3.5E-09 7.6E-14 111.4 2.4 168 50-226 51-229 (320)
65 PRK15179 Vi polysaccharide bio 98.7 6.3E-09 1.4E-13 119.5 4.6 124 84-216 101-224 (694)
66 PRK11788 tetratricopeptide rep 98.7 2.7E-09 5.8E-14 114.1 1.4 122 104-234 108-234 (389)
67 CHL00033 ycf3 photosystem I as 98.7 2.3E-09 5E-14 102.0 -0.2 109 99-213 31-153 (168)
68 TIGR02552 LcrH_SycD type III s 98.7 1.5E-09 3.3E-14 98.6 -1.7 107 124-239 4-110 (135)
69 COG4235 Cytochrome c biogenesi 98.7 6.8E-09 1.5E-13 105.8 2.7 140 78-226 131-273 (287)
70 COG5010 TadD Flp pilus assembl 98.7 5.5E-09 1.2E-13 104.2 1.8 128 96-232 93-220 (257)
71 PRK11788 tetratricopeptide rep 98.7 5.6E-09 1.2E-13 111.6 1.8 141 84-228 122-263 (389)
72 TIGR03302 OM_YfiO outer membra 98.7 3.9E-09 8.4E-14 105.4 0.2 118 99-222 29-157 (235)
73 PRK10049 pgaA outer membrane p 98.6 6.8E-09 1.5E-13 121.7 1.2 133 87-229 33-165 (765)
74 PRK15331 chaperone protein Sic 98.6 4.8E-09 1E-13 98.7 -0.1 120 99-228 33-152 (165)
75 PF13432 TPR_16: Tetratricopep 98.6 2.6E-09 5.6E-14 85.1 -2.7 64 151-214 2-65 (65)
76 PRK10049 pgaA outer membrane p 98.6 2.4E-08 5.2E-13 117.1 4.1 104 104-216 360-463 (765)
77 KOG1129 TPR repeat-containing 98.6 2.4E-08 5.2E-13 102.0 2.6 141 83-232 304-447 (478)
78 PRK15363 pathogenicity island 98.5 1.2E-08 2.6E-13 95.6 -1.6 95 148-242 37-131 (157)
79 KOG4555 TPR repeat-containing 98.5 3.2E-08 6.9E-13 89.1 0.2 102 102-212 42-147 (175)
80 KOG2002 TPR-containing nuclear 98.5 9.6E-08 2.1E-12 108.9 3.9 139 84-231 627-767 (1018)
81 PLN03088 SGT1, suppressor of 98.5 3.3E-08 7.1E-13 105.8 -0.1 104 83-195 16-119 (356)
82 PF13429 TPR_15: Tetratricopep 98.4 7.4E-09 1.6E-13 106.5 -5.1 181 51-241 59-241 (280)
83 PF13371 TPR_9: Tetratricopept 98.4 4.1E-08 8.8E-13 79.8 -0.2 69 153-221 2-70 (73)
84 COG4783 Putative Zn-dependent 98.4 6E-08 1.3E-12 104.0 0.6 123 101-232 304-426 (484)
85 PF13432 TPR_16: Tetratricopep 98.4 1.7E-08 3.6E-13 80.4 -2.8 64 108-180 2-65 (65)
86 PF09976 TPR_21: Tetratricopep 98.4 1.8E-07 4E-12 86.9 3.6 100 101-207 46-145 (145)
87 PRK10803 tol-pal system protei 98.4 7E-08 1.5E-12 98.9 0.7 109 103-217 142-254 (263)
88 PF14559 TPR_19: Tetratricopep 98.4 7.3E-08 1.6E-12 77.1 0.3 66 157-222 2-67 (68)
89 COG4783 Putative Zn-dependent 98.4 7.9E-08 1.7E-12 103.1 0.4 134 86-228 323-456 (484)
90 KOG4648 Uncharacterized conser 98.4 5.4E-08 1.2E-12 99.9 -0.8 92 150-241 101-192 (536)
91 KOG0546 HSP90 co-chaperone CPR 98.4 2.6E-07 5.6E-12 95.7 4.1 134 99-232 218-361 (372)
92 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.7E-07 3.7E-12 100.8 0.6 69 141-209 70-141 (453)
93 cd05804 StaR_like StaR_like; a 98.3 3.4E-07 7.4E-12 96.7 2.4 161 43-212 50-218 (355)
94 PRK14574 hmsH outer membrane p 98.3 4.6E-07 9.9E-12 106.2 3.5 178 42-229 40-218 (822)
95 CHL00033 ycf3 photosystem I as 98.2 2E-07 4.3E-12 88.6 -0.3 114 109-229 5-121 (168)
96 TIGR00540 hemY_coli hemY prote 98.2 7.2E-07 1.6E-11 97.2 3.6 133 101-241 261-397 (409)
97 cd00189 TPR Tetratricopeptide 98.2 1.3E-07 2.7E-12 76.8 -1.8 85 148-232 2-86 (100)
98 KOG1840 Kinesin light chain [C 98.2 2E-07 4.2E-12 103.1 -1.1 149 99-248 237-401 (508)
99 KOG1128 Uncharacterized conser 98.2 2.2E-07 4.8E-12 103.4 -0.7 129 99-236 481-609 (777)
100 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 4.2E-07 9E-12 97.9 1.3 72 98-175 70-141 (453)
101 KOG2002 TPR-containing nuclear 98.2 4.7E-07 1E-11 103.4 1.8 171 52-228 215-390 (1018)
102 PF14559 TPR_19: Tetratricopep 98.2 1.8E-07 4E-12 74.8 -1.1 66 113-187 1-66 (68)
103 PRK10153 DNA-binding transcrip 98.2 1.9E-06 4E-11 96.5 6.4 129 77-215 350-488 (517)
104 KOG4162 Predicted calmodulin-b 98.2 4.2E-07 9.1E-12 101.7 1.0 115 92-215 673-789 (799)
105 PF13371 TPR_9: Tetratricopept 98.2 2.5E-07 5.3E-12 75.1 -0.6 69 110-187 2-70 (73)
106 KOG2076 RNA polymerase III tra 98.2 3.8E-07 8.2E-12 103.6 0.4 119 84-211 154-272 (895)
107 cd05804 StaR_like StaR_like; a 98.2 2.6E-07 5.6E-12 97.7 -1.5 144 83-233 57-205 (355)
108 PF13512 TPR_18: Tetratricopep 98.1 3.7E-07 8E-12 84.3 -0.6 108 103-216 10-135 (142)
109 PRK14574 hmsH outer membrane p 98.1 4.2E-07 9.1E-12 106.5 -0.4 127 81-216 46-172 (822)
110 PRK10866 outer membrane biogen 98.1 4.8E-07 1E-11 91.7 0.0 123 102-230 31-177 (243)
111 PF12688 TPR_5: Tetratrico pep 98.1 2.7E-07 5.8E-12 83.4 -2.0 99 104-208 2-103 (120)
112 KOG2076 RNA polymerase III tra 98.1 1.5E-06 3.3E-11 98.7 3.2 121 102-231 138-258 (895)
113 PF06552 TOM20_plant: Plant sp 98.1 4.1E-07 8.9E-12 86.6 -1.3 98 119-225 7-125 (186)
114 PF13525 YfiO: Outer membrane 98.1 6.1E-07 1.3E-11 88.4 -0.4 122 102-229 4-142 (203)
115 COG5010 TadD Flp pilus assembl 98.1 2.3E-06 5E-11 85.7 3.7 156 43-207 73-229 (257)
116 KOG1308 Hsp70-interacting prot 98.1 2.2E-06 4.7E-11 88.6 3.5 77 157-233 125-201 (377)
117 KOG1173 Anaphase-promoting com 98.1 1.3E-06 2.8E-11 95.1 1.9 120 110-238 387-513 (611)
118 PRK02603 photosystem I assembl 98.1 6.2E-07 1.3E-11 85.8 -0.6 91 146-236 35-128 (172)
119 KOG1129 TPR repeat-containing 98.1 6.6E-07 1.4E-11 91.7 -0.6 132 86-223 341-472 (478)
120 KOG3060 Uncharacterized conser 98.1 2.3E-06 5.1E-11 85.2 3.1 121 100-229 83-203 (289)
121 COG4785 NlpI Lipoprotein NlpI, 98.0 3.1E-06 6.6E-11 82.6 3.2 119 99-226 61-179 (297)
122 PRK10747 putative protoheme IX 98.0 5.8E-06 1.3E-10 89.8 4.8 131 98-241 258-388 (398)
123 TIGR02795 tol_pal_ybgF tol-pal 98.0 5.6E-07 1.2E-11 79.0 -2.6 94 148-241 4-103 (119)
124 KOG1174 Anaphase-promoting com 97.9 1.4E-06 3.1E-11 91.7 -0.8 145 85-239 316-496 (564)
125 COG1729 Uncharacterized protei 97.9 2.4E-06 5.2E-11 86.4 0.2 109 104-218 142-253 (262)
126 KOG1310 WD40 repeat protein [G 97.9 3.8E-06 8.2E-11 90.7 1.4 114 96-218 367-483 (758)
127 PF13424 TPR_12: Tetratricopep 97.9 3.4E-07 7.3E-12 75.5 -5.2 64 146-209 5-75 (78)
128 PRK14720 transcript cleavage f 97.9 3.2E-06 6.9E-11 98.7 0.8 146 62-210 23-179 (906)
129 PRK14720 transcript cleavage f 97.9 2.3E-06 5E-11 99.9 -0.3 135 97-233 25-168 (906)
130 KOG3060 Uncharacterized conser 97.9 1.7E-05 3.7E-10 79.2 5.1 137 84-229 101-240 (289)
131 KOG1156 N-terminal acetyltrans 97.9 1.1E-05 2.3E-10 89.2 4.0 146 78-232 16-161 (700)
132 PF13424 TPR_12: Tetratricopep 97.8 5.8E-07 1.3E-11 74.1 -4.6 75 100-176 2-76 (78)
133 KOG1156 N-terminal acetyltrans 97.8 1.1E-05 2.4E-10 89.2 3.5 119 105-232 9-127 (700)
134 COG2956 Predicted N-acetylgluc 97.8 3.4E-06 7.4E-11 86.6 -0.5 126 102-231 140-266 (389)
135 PRK11906 transcriptional regul 97.8 9.9E-06 2.2E-10 87.5 3.0 129 77-214 266-406 (458)
136 PF09976 TPR_21: Tetratricopep 97.8 1.8E-06 3.9E-11 80.2 -2.3 129 103-238 11-142 (145)
137 KOG4234 TPR repeat-containing 97.8 4E-06 8.7E-11 80.9 -0.4 89 153-241 102-195 (271)
138 KOG1840 Kinesin light chain [C 97.8 4.5E-06 9.7E-11 92.5 -0.1 142 99-241 321-477 (508)
139 KOG2003 TPR repeat-containing 97.7 3E-05 6.6E-10 82.4 5.0 125 99-223 554-703 (840)
140 KOG0543 FKBP-type peptidyl-pro 97.7 1.1E-05 2.5E-10 85.3 1.8 99 103-210 257-356 (397)
141 KOG4162 Predicted calmodulin-b 97.7 4.7E-06 1E-10 93.5 -1.4 128 105-241 652-781 (799)
142 KOG1127 TPR repeat-containing 97.7 1.8E-05 3.8E-10 90.9 2.9 161 81-241 470-657 (1238)
143 KOG1174 Anaphase-promoting com 97.7 1.7E-05 3.8E-10 83.6 1.7 134 99-232 228-386 (564)
144 PF12895 Apc3: Anaphase-promot 97.7 6.5E-06 1.4E-10 69.1 -1.2 74 159-233 2-77 (84)
145 PF12569 NARP1: NMDA receptor- 97.6 1E-05 2.3E-10 90.3 -0.1 78 147-224 195-272 (517)
146 KOG1128 Uncharacterized conser 97.6 1.4E-05 3.1E-10 89.4 0.7 122 82-212 498-619 (777)
147 PRK10153 DNA-binding transcrip 97.6 1.5E-05 3.2E-10 89.3 -0.0 130 102-241 338-480 (517)
148 PF13431 TPR_17: Tetratricopep 97.6 1.7E-05 3.7E-10 55.3 0.1 34 168-201 1-34 (34)
149 PRK10803 tol-pal system protei 97.6 6.3E-06 1.4E-10 84.5 -3.0 96 148-243 144-246 (263)
150 TIGR00540 hemY_coli hemY prote 97.5 3.6E-05 7.8E-10 83.9 2.4 125 81-213 96-220 (409)
151 COG2956 Predicted N-acetylgluc 97.5 0.00018 3.8E-09 74.3 6.5 124 82-214 154-283 (389)
152 KOG1130 Predicted G-alpha GTPa 97.5 2.8E-05 6E-10 82.1 0.0 108 99-209 131-264 (639)
153 KOG4642 Chaperone-dependent E3 97.5 3.2E-05 6.9E-10 76.6 0.4 77 152-228 16-92 (284)
154 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 5.1E-05 1.1E-09 82.0 1.9 125 85-221 185-309 (395)
155 PRK10747 putative protoheme IX 97.4 3E-05 6.5E-10 84.3 0.0 196 43-241 124-355 (398)
156 PF00515 TPR_1: Tetratricopept 97.4 3.9E-05 8.5E-10 52.9 0.3 34 180-213 1-34 (34)
157 KOG0495 HAT repeat protein [RN 97.4 0.00012 2.5E-09 81.3 3.9 136 84-229 599-734 (913)
158 COG4235 Cytochrome c biogenesi 97.4 5E-05 1.1E-09 77.8 0.5 107 118-233 137-246 (287)
159 PRK11906 transcriptional regul 97.3 2.8E-05 6.1E-10 84.1 -1.6 117 107-232 259-390 (458)
160 PRK15331 chaperone protein Sic 97.3 0.0001 2.2E-09 69.7 2.3 108 62-179 29-137 (165)
161 PF14938 SNAP: Soluble NSF att 97.3 4.4E-05 9.6E-10 79.0 -0.3 113 100-215 111-231 (282)
162 PF13428 TPR_14: Tetratricopep 97.3 8.1E-05 1.8E-09 54.8 0.8 42 181-222 2-43 (44)
163 PF04733 Coatomer_E: Coatomer 97.3 0.0001 2.2E-09 76.8 1.6 109 110-229 138-250 (290)
164 KOG2376 Signal recognition par 97.3 0.0002 4.4E-09 78.7 3.8 156 40-208 16-203 (652)
165 PF12688 TPR_5: Tetratrico pep 97.3 4.1E-05 8.8E-10 69.2 -1.4 86 148-233 3-94 (120)
166 PF07719 TPR_2: Tetratricopept 97.2 0.00014 2.9E-09 49.8 0.9 34 180-213 1-34 (34)
167 KOG1130 Predicted G-alpha GTPa 97.1 5.4E-05 1.2E-09 80.0 -2.1 107 102-211 194-306 (639)
168 KOG1127 TPR repeat-containing 97.1 0.00028 6.1E-09 81.4 2.9 135 92-235 442-617 (1238)
169 PF06552 TOM20_plant: Plant sp 97.0 0.0001 2.2E-09 70.5 -1.0 88 85-181 7-115 (186)
170 PF04733 Coatomer_E: Coatomer 97.0 0.00046 1E-08 71.9 3.3 126 84-218 146-274 (290)
171 PRK10866 outer membrane biogen 97.0 0.0014 3E-08 66.6 6.5 124 100-229 66-227 (243)
172 KOG0495 HAT repeat protein [RN 96.9 0.00073 1.6E-08 75.1 4.3 120 103-231 651-770 (913)
173 KOG2376 Signal recognition par 96.9 0.00077 1.7E-08 74.3 4.4 122 81-215 24-145 (652)
174 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.00025 5.5E-09 76.6 0.1 109 113-233 179-287 (395)
175 PF13428 TPR_14: Tetratricopep 96.9 0.00011 2.3E-09 54.1 -2.0 42 148-189 3-44 (44)
176 PF13525 YfiO: Outer membrane 96.8 0.00069 1.5E-08 66.7 2.7 126 98-229 37-193 (203)
177 KOG0551 Hsp90 co-chaperone CNS 96.8 0.0005 1.1E-08 71.2 1.2 81 149-229 84-168 (390)
178 KOG2471 TPR repeat-containing 96.7 0.0011 2.3E-08 71.8 3.5 139 87-226 224-381 (696)
179 COG4700 Uncharacterized protei 96.7 0.00036 7.7E-09 67.1 -0.3 124 103-236 89-215 (251)
180 COG1729 Uncharacterized protei 96.7 0.00013 2.8E-09 74.0 -3.4 96 149-244 144-245 (262)
181 COG4105 ComL DNA uptake lipopr 96.7 0.00065 1.4E-08 68.5 1.2 124 102-231 33-170 (254)
182 KOG4555 TPR repeat-containing 96.7 0.0003 6.4E-09 63.9 -1.1 61 153-213 50-110 (175)
183 PF00515 TPR_1: Tetratricopept 96.6 0.0011 2.5E-08 45.4 1.7 34 103-136 1-34 (34)
184 KOG4151 Myosin assembly protei 96.5 0.0013 2.7E-08 75.0 2.6 125 99-228 49-175 (748)
185 COG3071 HemY Uncharacterized e 96.5 0.0027 5.7E-08 67.3 4.8 122 103-237 263-384 (400)
186 PF07719 TPR_2: Tetratricopept 96.5 0.0015 3.2E-08 44.6 2.0 34 103-136 1-34 (34)
187 PF13431 TPR_17: Tetratricopep 96.5 0.00026 5.7E-09 49.3 -2.0 34 125-167 1-34 (34)
188 PF12968 DUF3856: Domain of Un 96.5 0.00025 5.4E-09 63.2 -2.7 103 106-208 12-128 (144)
189 PF03704 BTAD: Bacterial trans 96.5 0.00033 7.2E-09 64.7 -2.1 101 107-207 10-123 (146)
190 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.0023 4.9E-08 49.3 2.5 49 181-229 2-50 (53)
191 COG4785 NlpI Lipoprotein NlpI, 96.4 0.0053 1.2E-07 60.5 5.4 90 84-182 80-169 (297)
192 KOG2796 Uncharacterized conser 96.4 0.0029 6.3E-08 63.8 3.6 112 100-214 209-320 (366)
193 KOG3785 Uncharacterized conser 96.4 0.00065 1.4E-08 70.8 -1.1 111 107-227 61-198 (557)
194 PF14938 SNAP: Soluble NSF att 96.3 0.00026 5.6E-09 73.3 -4.4 128 102-233 34-174 (282)
195 PF13512 TPR_18: Tetratricopep 96.3 0.0022 4.7E-08 59.5 2.1 83 93-181 37-134 (142)
196 KOG4340 Uncharacterized conser 96.2 0.0055 1.2E-07 62.8 4.9 65 101-174 142-206 (459)
197 PRK10941 hypothetical protein; 96.2 0.0011 2.5E-08 68.1 -0.2 77 143-219 178-254 (269)
198 COG0457 NrfG FOG: TPR repeat [ 96.1 0.004 8.6E-08 57.5 3.1 122 98-228 90-216 (291)
199 PF13181 TPR_8: Tetratricopept 96.1 0.0014 2.9E-08 44.9 -0.1 34 180-213 1-34 (34)
200 KOG4340 Uncharacterized conser 95.9 0.0077 1.7E-07 61.8 4.0 124 83-206 58-204 (459)
201 KOG0376 Serine-threonine phosp 95.9 0.0029 6.2E-08 68.7 0.9 110 82-200 17-128 (476)
202 PF15015 NYD-SP12_N: Spermatog 95.9 0.0016 3.6E-08 69.2 -0.9 103 104-206 177-288 (569)
203 KOG4507 Uncharacterized conser 95.8 0.0028 6.1E-08 69.8 0.7 110 108-225 612-721 (886)
204 PF12569 NARP1: NMDA receptor- 95.6 0.0043 9.3E-08 69.6 0.9 130 103-241 194-332 (517)
205 PLN03081 pentatricopeptide (PP 95.6 0.0061 1.3E-07 71.1 2.1 88 107-205 466-553 (697)
206 KOG3785 Uncharacterized conser 95.6 0.004 8.7E-08 65.1 0.5 103 113-227 32-134 (557)
207 COG0457 NrfG FOG: TPR repeat [ 95.4 0.0053 1.2E-07 56.6 0.9 102 112-220 139-242 (291)
208 smart00028 TPR Tetratricopepti 95.4 0.0082 1.8E-07 38.5 1.3 33 181-213 2-34 (34)
209 PF10300 DUF3808: Protein of u 95.3 0.0028 6E-08 70.5 -2.0 118 84-206 248-373 (468)
210 COG3898 Uncharacterized membra 95.1 0.019 4.1E-07 60.9 3.7 182 35-219 116-301 (531)
211 COG3071 HemY Uncharacterized e 94.7 0.013 2.9E-07 62.1 1.4 125 36-173 262-388 (400)
212 PF13174 TPR_6: Tetratricopept 94.6 0.013 2.8E-07 39.4 0.8 33 181-213 1-33 (33)
213 KOG3824 Huntingtin interacting 94.6 0.02 4.4E-07 59.0 2.4 115 102-225 115-234 (472)
214 COG2976 Uncharacterized protei 94.6 0.037 8E-07 53.8 3.9 105 100-212 86-191 (207)
215 PF04184 ST7: ST7 protein; In 94.5 0.049 1.1E-06 59.7 5.1 125 90-216 189-332 (539)
216 KOG2053 Mitochondrial inherita 94.4 0.023 5.1E-07 65.6 2.5 148 78-235 18-166 (932)
217 KOG2610 Uncharacterized conser 94.4 0.087 1.9E-06 55.1 6.4 113 104-225 104-220 (491)
218 COG4976 Predicted methyltransf 94.4 0.017 3.6E-07 57.5 1.1 60 155-214 4-63 (287)
219 PF13176 TPR_7: Tetratricopept 94.3 0.0067 1.5E-07 42.5 -1.3 28 182-209 1-28 (36)
220 PLN03081 pentatricopeptide (PP 94.2 0.034 7.3E-07 64.9 3.5 117 105-230 428-544 (697)
221 PRK04841 transcriptional regul 94.2 0.0081 1.7E-07 71.8 -1.7 106 103-211 491-604 (903)
222 KOG1941 Acetylcholine receptor 94.2 0.0067 1.5E-07 63.7 -2.1 104 104-210 123-236 (518)
223 PF13176 TPR_7: Tetratricopept 94.2 0.024 5.2E-07 39.7 1.3 30 105-134 1-30 (36)
224 PF13181 TPR_8: Tetratricopept 94.2 0.027 5.8E-07 38.3 1.5 32 104-135 2-33 (34)
225 KOG1586 Protein required for f 94.1 0.023 5E-07 56.7 1.4 156 46-216 64-231 (288)
226 PLN03077 Protein ECB2; Provisi 93.9 0.031 6.6E-07 66.8 2.2 92 103-205 625-716 (857)
227 KOG3364 Membrane protein invol 93.5 0.021 4.6E-07 52.3 -0.0 82 148-229 34-120 (149)
228 PF05843 Suf: Suppressor of fo 93.5 0.022 4.8E-07 59.0 0.1 114 106-228 4-121 (280)
229 KOG4814 Uncharacterized conser 93.4 0.013 2.8E-07 65.4 -1.8 103 104-209 355-457 (872)
230 COG3118 Thioredoxin domain-con 93.4 0.05 1.1E-06 56.1 2.5 113 107-228 138-286 (304)
231 COG4700 Uncharacterized protei 93.3 0.022 4.7E-07 55.1 -0.2 112 118-239 71-185 (251)
232 KOG0545 Aryl-hydrocarbon recep 93.1 0.016 3.5E-07 58.1 -1.5 85 148-232 180-282 (329)
233 PF14561 TPR_20: Tetratricopep 92.6 0.079 1.7E-06 45.4 2.3 65 165-229 7-73 (90)
234 KOG3824 Huntingtin interacting 92.4 0.066 1.4E-06 55.4 1.8 72 151-222 121-192 (472)
235 PLN03218 maturation of RBCL 1; 92.3 0.066 1.4E-06 65.2 1.9 92 105-206 616-710 (1060)
236 KOG4507 Uncharacterized conser 92.2 0.049 1.1E-06 60.4 0.7 111 97-214 207-317 (886)
237 KOG2053 Mitochondrial inherita 92.2 0.074 1.6E-06 61.6 2.0 91 113-212 19-109 (932)
238 PF14853 Fis1_TPR_C: Fis1 C-te 91.7 0.017 3.7E-07 44.5 -2.6 39 148-186 3-41 (53)
239 PF13174 TPR_6: Tetratricopept 91.5 0.11 2.4E-06 34.7 1.5 32 104-135 1-32 (33)
240 KOG3081 Vesicle coat complex C 91.5 0.17 3.7E-06 51.6 3.4 121 84-215 152-277 (299)
241 smart00028 TPR Tetratricopepti 91.4 0.1 2.2E-06 33.0 1.3 32 104-135 2-33 (34)
242 KOG3081 Vesicle coat complex C 91.3 0.075 1.6E-06 54.0 0.7 112 111-229 145-256 (299)
243 PF09986 DUF2225: Uncharacteri 91.2 0.067 1.5E-06 53.3 0.3 98 112-211 86-196 (214)
244 PF04184 ST7: ST7 protein; In 91.0 0.062 1.3E-06 58.9 -0.2 107 103-216 259-382 (539)
245 PRK04841 transcriptional regul 90.9 0.039 8.4E-07 66.0 -2.1 108 103-211 531-643 (903)
246 COG4976 Predicted methyltransf 90.9 0.084 1.8E-06 52.6 0.6 61 111-180 3-63 (287)
247 PF10602 RPN7: 26S proteasome 90.8 0.073 1.6E-06 51.4 0.1 103 100-208 33-141 (177)
248 KOG1070 rRNA processing protei 90.7 0.096 2.1E-06 63.2 1.0 136 84-232 1473-1618(1710)
249 KOG1070 rRNA processing protei 90.7 0.12 2.6E-06 62.4 1.8 131 88-228 1516-1648(1710)
250 PLN03077 Protein ECB2; Provisi 90.5 0.097 2.1E-06 62.6 0.8 113 84-212 539-656 (857)
251 PLN03218 maturation of RBCL 1; 90.3 0.11 2.3E-06 63.5 0.9 113 103-226 507-626 (1060)
252 PRK10941 hypothetical protein; 90.3 0.073 1.6E-06 54.9 -0.4 77 103-188 181-257 (269)
253 PF05843 Suf: Suppressor of fo 90.1 0.11 2.3E-06 53.9 0.6 128 85-221 17-148 (280)
254 KOG2471 TPR repeat-containing 90.0 0.077 1.7E-06 57.9 -0.5 91 102-192 282-381 (696)
255 KOG1915 Cell cycle control pro 90.0 0.21 4.5E-06 54.5 2.7 115 90-213 60-174 (677)
256 COG2912 Uncharacterized conser 89.9 0.061 1.3E-06 55.0 -1.3 75 143-217 178-252 (269)
257 KOG2796 Uncharacterized conser 89.9 0.15 3.3E-06 51.8 1.4 90 81-179 224-319 (366)
258 PF04781 DUF627: Protein of un 88.1 0.12 2.5E-06 46.0 -0.7 96 109-210 2-108 (111)
259 KOG1941 Acetylcholine receptor 87.5 0.11 2.4E-06 54.9 -1.3 147 84-233 21-181 (518)
260 PF13374 TPR_10: Tetratricopep 87.4 0.36 7.8E-06 33.9 1.7 32 103-134 2-33 (42)
261 KOG2610 Uncharacterized conser 87.2 0.24 5.2E-06 52.0 0.8 112 90-207 124-236 (491)
262 PF13374 TPR_10: Tetratricopep 86.3 0.25 5.4E-06 34.7 0.3 30 180-209 2-31 (42)
263 KOG2396 HAT (Half-A-TPR) repea 86.1 0.29 6.3E-06 53.7 0.8 94 120-222 88-182 (568)
264 PF03704 BTAD: Bacterial trans 85.8 0.25 5.4E-06 45.4 0.1 74 177-250 59-132 (146)
265 KOG3364 Membrane protein invol 85.7 0.41 8.8E-06 44.1 1.4 75 102-184 31-109 (149)
266 COG4105 ComL DNA uptake lipopr 85.6 1.5 3.3E-05 44.6 5.6 123 98-226 66-213 (254)
267 KOG1915 Cell cycle control pro 83.9 1.1 2.3E-05 49.2 3.8 99 102-210 403-501 (677)
268 COG2912 Uncharacterized conser 83.2 0.62 1.3E-05 47.8 1.7 79 102-189 180-258 (269)
269 smart00727 STI1 Heat shock cha 82.2 2.1 4.5E-05 30.7 3.7 31 483-515 3-33 (41)
270 PF11116 DUF2624: Protein of u 81.6 2.8 6E-05 35.5 4.6 43 492-534 3-45 (85)
271 PF10516 SHNi-TPR: SHNi-TPR; 80.3 0.51 1.1E-05 33.8 -0.1 29 181-209 2-30 (38)
272 PF07721 TPR_4: Tetratricopept 80.0 0.99 2.1E-05 29.1 1.2 25 181-205 2-26 (26)
273 KOG1586 Protein required for f 79.8 0.3 6.4E-06 49.0 -2.0 105 104-212 35-146 (288)
274 PF12862 Apc5: Anaphase-promot 78.8 0.18 3.8E-06 43.4 -3.5 66 113-212 8-73 (94)
275 KOG1310 WD40 repeat protein [G 78.7 0.87 1.9E-05 50.4 1.0 77 159-235 387-466 (758)
276 PRK13184 pknD serine/threonine 78.6 0.62 1.4E-05 55.8 -0.2 113 110-229 482-601 (932)
277 PF08631 SPO22: Meiosis protei 78.4 0.72 1.6E-05 47.7 0.2 112 99-211 31-152 (278)
278 KOG1585 Protein required for f 77.8 0.99 2.2E-05 45.6 1.0 109 99-210 106-220 (308)
279 PF14561 TPR_20: Tetratricopep 77.6 0.41 8.8E-06 41.0 -1.6 49 122-179 7-55 (90)
280 PF02259 FAT: FAT domain; Int 77.1 1 2.2E-05 47.2 1.0 126 99-229 142-307 (352)
281 PF03672 UPF0154: Uncharacteri 77.0 3.6 7.7E-05 32.9 3.7 36 499-534 25-62 (64)
282 PF10373 EST1_DNA_bind: Est1 D 76.7 1.1 2.5E-05 45.4 1.1 62 165-226 1-62 (278)
283 COG3914 Spy Predicted O-linked 76.1 1.9 4.1E-05 48.5 2.6 109 109-226 73-188 (620)
284 PF02259 FAT: FAT domain; Int 76.0 0.39 8.5E-06 50.4 -2.6 111 102-212 183-341 (352)
285 PF10579 Rapsyn_N: Rapsyn N-te 75.9 0.55 1.2E-05 39.2 -1.2 61 103-169 6-66 (80)
286 PF09613 HrpB1_HrpK: Bacterial 75.5 1.9 4.1E-05 40.9 2.2 78 152-229 16-93 (160)
287 PF10300 DUF3808: Protein of u 75.0 1.2 2.5E-05 49.8 0.7 93 116-217 246-342 (468)
288 KOG0686 COP9 signalosome, subu 74.8 1 2.3E-05 48.4 0.3 100 103-208 150-257 (466)
289 PF07079 DUF1347: Protein of u 74.4 1.5 3.2E-05 47.9 1.3 72 153-228 469-544 (549)
290 KOG1550 Extracellular protein 73.8 1.3 2.7E-05 50.6 0.6 103 106-223 291-405 (552)
291 PRK00523 hypothetical protein; 72.6 7.9 0.00017 31.7 4.7 31 504-534 40-70 (72)
292 PHA02537 M terminase endonucle 70.7 4.9 0.00011 40.5 3.9 105 113-228 93-225 (230)
293 PF12862 Apc5: Anaphase-promot 69.8 1 2.2E-05 38.6 -1.0 18 158-175 10-27 (94)
294 COG3898 Uncharacterized membra 67.9 3.5 7.6E-05 44.4 2.3 125 87-226 247-374 (531)
295 PF09613 HrpB1_HrpK: Bacterial 67.8 2.2 4.8E-05 40.5 0.7 86 102-196 9-94 (160)
296 COG3914 Spy Predicted O-linked 67.2 3 6.4E-05 47.0 1.7 92 122-220 50-142 (620)
297 COG5346 Predicted membrane pro 67.2 3.9 8.4E-05 36.7 2.1 60 529-588 44-106 (136)
298 PRK01844 hypothetical protein; 66.8 12 0.00027 30.6 4.7 35 499-533 32-68 (72)
299 COG3947 Response regulator con 65.7 6.1 0.00013 41.1 3.4 54 152-205 285-338 (361)
300 COG5191 Uncharacterized conser 64.8 0.9 2E-05 47.3 -2.7 89 126-223 96-185 (435)
301 COG0790 FOG: TPR repeat, SEL1 64.5 3.4 7.3E-05 42.5 1.4 108 102-221 108-230 (292)
302 PF15015 NYD-SP12_N: Spermatog 63.1 4.9 0.00011 43.7 2.2 76 158-233 195-281 (569)
303 PF07720 TPR_3: Tetratricopept 61.6 3.8 8.3E-05 28.9 0.8 33 181-213 2-36 (36)
304 KOG2047 mRNA splicing factor [ 61.1 3 6.5E-05 47.4 0.3 121 85-209 493-615 (835)
305 PF11207 DUF2989: Protein of u 60.9 5.2 0.00011 39.4 1.9 63 97-165 135-197 (203)
306 PF07720 TPR_3: Tetratricopept 60.7 6.6 0.00014 27.7 1.9 32 104-135 2-35 (36)
307 PF10516 SHNi-TPR: SHNi-TPR; 60.2 4.5 9.8E-05 28.9 1.0 31 104-134 2-32 (38)
308 PF13281 DUF4071: Domain of un 58.8 8.7 0.00019 41.5 3.3 104 106-214 144-260 (374)
309 KOG4814 Uncharacterized conser 58.6 2.2 4.7E-05 48.4 -1.3 69 148-216 356-430 (872)
310 COG3118 Thioredoxin domain-con 57.6 4.4 9.5E-05 42.2 0.8 85 84-177 149-267 (304)
311 KOG1585 Protein required for f 57.5 2.4 5.2E-05 43.0 -1.1 101 103-207 71-177 (308)
312 COG3629 DnrI DNA-binding trans 57.2 1.1 2.3E-05 46.5 -3.7 66 144-209 151-216 (280)
313 KOG3617 WD40 and TPR repeat-co 57.1 16 0.00034 43.0 5.1 83 105-209 914-996 (1416)
314 KOG2300 Uncharacterized conser 55.5 6.3 0.00014 43.6 1.5 103 99-210 363-475 (629)
315 smart00727 STI1 Heat shock cha 54.9 12 0.00025 26.8 2.4 24 385-410 10-33 (41)
316 PF10373 EST1_DNA_bind: Est1 D 54.2 3.1 6.6E-05 42.2 -1.0 62 122-192 1-62 (278)
317 TIGR02561 HrpB1_HrpK type III 52.7 8 0.00017 36.4 1.6 72 158-229 22-93 (153)
318 PF04910 Tcf25: Transcriptiona 51.5 3.6 7.9E-05 44.3 -1.0 106 99-212 99-225 (360)
319 COG2976 Uncharacterized protei 51.4 12 0.00027 36.7 2.7 87 82-179 102-192 (207)
320 cd02682 MIT_AAA_Arch MIT: doma 51.2 11 0.00024 31.2 2.0 30 103-132 6-35 (75)
321 PRK09687 putative lyase; Provi 50.1 1.1E+02 0.0024 31.7 9.7 29 13-42 42-72 (280)
322 PF04910 Tcf25: Transcriptiona 49.6 12 0.00026 40.3 2.6 103 97-215 34-139 (360)
323 PF10255 Paf67: RNA polymerase 49.3 4.6 0.0001 44.0 -0.6 109 111-220 130-241 (404)
324 PF12968 DUF3856: Domain of Un 49.3 1.9 4.1E-05 39.0 -3.0 71 104-174 56-128 (144)
325 KOG0985 Vesicle coat protein c 49.1 51 0.0011 39.9 7.5 106 104-226 1195-1325(1666)
326 KOG2047 mRNA splicing factor [ 48.3 90 0.002 36.1 9.1 128 83-211 401-542 (835)
327 KOG1550 Extracellular protein 48.3 12 0.00026 42.7 2.4 105 114-226 260-372 (552)
328 KOG0530 Protein farnesyltransf 48.1 5.7 0.00012 40.7 -0.1 109 113-230 53-163 (318)
329 PF01004 Flavi_M: Flavivirus e 47.5 12 0.00027 30.9 1.7 24 554-577 26-49 (75)
330 KOG0985 Vesicle coat protein c 47.4 42 0.00091 40.6 6.5 40 179-223 1219-1258(1666)
331 PF09986 DUF2225: Uncharacteri 47.0 3.2 7E-05 41.3 -2.1 72 101-175 123-194 (214)
332 COG4649 Uncharacterized protei 47.0 79 0.0017 30.8 7.3 139 70-215 62-201 (221)
333 PF13281 DUF4071: Domain of un 46.7 8.8 0.00019 41.5 1.0 82 148-229 143-232 (374)
334 PF04212 MIT: MIT (microtubule 46.6 13 0.00028 29.8 1.7 30 103-132 5-34 (69)
335 KOG2758 Translation initiation 46.2 84 0.0018 33.4 7.9 146 22-173 33-194 (432)
336 COG5191 Uncharacterized conser 45.9 10 0.00022 39.8 1.3 78 98-184 102-180 (435)
337 COG4941 Predicted RNA polymera 45.7 9.4 0.0002 40.4 1.0 96 117-222 310-407 (415)
338 PF11304 DUF3106: Protein of u 45.5 49 0.0011 29.2 5.4 18 14-31 34-51 (107)
339 KOG2396 HAT (Half-A-TPR) repea 45.0 9.3 0.0002 42.4 0.9 73 102-183 104-177 (568)
340 cd02681 MIT_calpain7_1 MIT: do 44.4 15 0.00033 30.4 1.9 30 103-132 6-35 (76)
341 PF08631 SPO22: Meiosis protei 43.7 4.8 0.0001 41.5 -1.5 103 113-217 3-124 (278)
342 cd02683 MIT_1 MIT: domain cont 43.3 16 0.00034 30.4 1.8 30 103-132 6-35 (77)
343 PF11817 Foie-gras_1: Foie gra 43.2 5.3 0.00011 40.6 -1.3 83 86-172 162-244 (247)
344 COG2909 MalT ATP-dependent tra 43.1 29 0.00064 41.1 4.5 108 104-211 416-528 (894)
345 PRK15180 Vi polysaccharide bio 43.0 5.5 0.00012 43.9 -1.2 20 483-502 657-676 (831)
346 COG3763 Uncharacterized protei 42.5 55 0.0012 26.7 4.6 34 493-526 26-61 (71)
347 PF11351 DUF3154: Protein of u 42.0 34 0.00074 31.0 3.9 58 520-580 12-75 (123)
348 PF09125 COX2-transmemb: Cytoc 41.8 15 0.00032 25.9 1.2 17 567-583 14-30 (38)
349 PF08424 NRDE-2: NRDE-2, neces 40.9 7 0.00015 41.3 -0.8 58 119-185 47-104 (321)
350 PF10579 Rapsyn_N: Rapsyn N-te 40.9 12 0.00026 31.3 0.8 49 157-205 17-68 (80)
351 cd02680 MIT_calpain7_2 MIT: do 40.6 19 0.00041 29.9 1.8 31 102-132 5-35 (75)
352 PF08424 NRDE-2: NRDE-2, neces 40.5 8.9 0.00019 40.5 -0.1 61 162-222 47-107 (321)
353 KOG2300 Uncharacterized conser 40.1 16 0.00034 40.6 1.6 124 81-206 21-153 (629)
354 TIGR03504 FimV_Cterm FimV C-te 39.7 17 0.00038 26.8 1.4 25 184-208 3-27 (44)
355 KOG2041 WD40 repeat protein [G 39.7 9.9 0.00022 43.7 0.1 81 102-203 795-875 (1189)
356 KOG0530 Protein farnesyltransf 39.1 20 0.00044 36.9 2.1 126 92-226 101-233 (318)
357 PF14863 Alkyl_sulf_dimr: Alky 38.7 23 0.0005 33.0 2.3 54 179-232 69-122 (141)
358 PF11212 DUF2999: Protein of u 38.6 61 0.0013 26.5 4.3 28 21-48 41-68 (82)
359 PF06957 COPI_C: Coatomer (COP 38.5 5.8 0.00013 43.5 -1.9 112 102-214 203-334 (422)
360 TIGR02561 HrpB1_HrpK type III 38.1 23 0.00049 33.4 2.2 82 105-195 12-93 (153)
361 COG4455 ImpE Protein of avirul 37.9 15 0.00033 36.8 1.0 63 156-218 11-73 (273)
362 KOG0546 HSP90 co-chaperone CPR 37.7 6.3 0.00014 41.9 -1.7 81 105-194 277-357 (372)
363 KOG3915 Transcription regulato 36.4 91 0.002 34.4 6.5 29 359-387 67-97 (641)
364 cd02678 MIT_VPS4 MIT: domain c 36.0 23 0.00051 28.9 1.7 31 102-132 5-35 (75)
365 COG3947 Response regulator con 36.0 30 0.00065 36.2 2.8 62 180-241 279-340 (361)
366 TIGR03798 ocin_TIGR03798 bacte 34.4 80 0.0017 25.0 4.5 54 484-543 8-61 (64)
367 smart00745 MIT Microtubule Int 33.8 28 0.00061 28.3 1.9 30 103-132 8-37 (77)
368 PF10345 Cohesin_load: Cohesin 33.7 25 0.00053 40.6 2.1 122 102-227 58-188 (608)
369 PF13646 HEAT_2: HEAT repeats; 33.4 63 0.0014 26.2 4.0 54 7-61 13-69 (88)
370 cd02684 MIT_2 MIT: domain cont 32.9 28 0.0006 28.7 1.7 31 102-132 5-35 (75)
371 COG0790 FOG: TPR repeat, SEL1 31.8 21 0.00046 36.5 1.0 62 119-194 171-236 (292)
372 PRK15180 Vi polysaccharide bio 31.7 25 0.00055 39.0 1.6 94 113-215 299-392 (831)
373 smart00386 HAT HAT (Half-A-TPR 31.6 30 0.00065 22.1 1.4 28 195-222 2-29 (33)
374 KOG3616 Selective LIM binding 31.3 47 0.001 38.7 3.6 56 144-207 763-818 (1636)
375 cd02682 MIT_AAA_Arch MIT: doma 31.2 24 0.00053 29.2 1.1 22 196-217 29-50 (75)
376 cd02656 MIT MIT: domain contai 31.1 31 0.00068 28.0 1.7 30 103-132 6-35 (75)
377 COG3629 DnrI DNA-binding trans 30.6 26 0.00056 36.4 1.4 64 178-241 151-214 (280)
378 KOG0529 Protein geranylgeranyl 29.1 20 0.00043 39.0 0.3 101 118-227 90-196 (421)
379 TIGR03042 PS_II_psbQ_bact phot 29.1 1.2E+02 0.0026 28.3 5.3 13 20-32 29-41 (142)
380 PF10602 RPN7: 26S proteasome 28.5 9.2 0.0002 36.8 -2.2 64 148-211 38-104 (177)
381 PRK13184 pknD serine/threonine 28.5 34 0.00074 41.5 2.1 99 106-214 522-625 (932)
382 KOG2114 Vacuolar assembly/sort 28.5 34 0.00074 40.3 2.0 36 99-134 364-399 (933)
383 KOG1839 Uncharacterized protei 28.4 11 0.00024 46.2 -2.0 111 99-210 969-1087(1236)
384 KOG0010 Ubiquitin-like protein 28.2 2.1E+02 0.0046 32.0 7.8 25 484-511 347-371 (493)
385 PF10255 Paf67: RNA polymerase 28.1 16 0.00036 39.9 -0.6 56 151-207 127-191 (404)
386 COG5546 Small integral membran 28.0 43 0.00094 27.5 1.9 30 561-590 2-33 (80)
387 PF07023 DUF1315: Protein of u 27.9 71 0.0015 27.6 3.3 34 498-531 2-42 (93)
388 KOG3617 WD40 and TPR repeat-co 27.8 61 0.0013 38.5 3.8 26 181-206 913-938 (1416)
389 KOG0860 Synaptobrevin/VAMP-lik 27.4 37 0.00081 30.5 1.6 21 540-560 59-79 (116)
390 PF08113 CoxIIa: Cytochrome c 27.4 65 0.0014 22.4 2.4 21 567-587 4-25 (34)
391 PF11137 DUF2909: Protein of u 27.3 34 0.00074 27.4 1.2 20 570-589 41-60 (63)
392 PF04781 DUF627: Protein of un 27.2 17 0.00037 32.4 -0.5 63 152-214 2-78 (111)
393 PF04348 LppC: LppC putative l 26.6 22 0.00047 40.5 0.0 102 102-211 23-129 (536)
394 PF14863 Alkyl_sulf_dimr: Alky 26.5 11 0.00023 35.2 -2.0 48 151-198 75-122 (141)
395 cd02677 MIT_SNX15 MIT: domain 26.5 41 0.00089 27.7 1.6 30 103-132 6-35 (75)
396 cd02679 MIT_spastin MIT: domai 25.7 57 0.0012 27.3 2.4 34 101-134 6-39 (79)
397 PF07079 DUF1347: Protein of u 25.6 22 0.00048 39.2 -0.1 60 103-172 462-521 (549)
398 KOG1924 RhoA GTPase effector D 25.5 4.5E+02 0.0096 31.4 9.9 20 115-134 377-396 (1102)
399 PRK11103 PTS system mannose-sp 25.2 48 0.001 34.5 2.2 28 563-590 253-282 (282)
400 PRK09687 putative lyase; Provi 24.7 6.8E+02 0.015 25.8 10.7 14 121-134 252-265 (280)
401 KOG3807 Predicted membrane pro 24.1 56 0.0012 34.8 2.4 60 147-206 276-337 (556)
402 PF05297 Herpes_LMP1: Herpesvi 23.7 26 0.00057 36.2 0.0 17 570-586 146-164 (381)
403 KOG2581 26S proteasome regulat 23.5 39 0.00085 36.8 1.2 63 152-214 215-281 (493)
404 KOG4459 Membrane-associated pr 21.6 51 0.0011 36.4 1.6 123 103-230 31-183 (471)
405 COG3716 ManZ Phosphotransferas 21.5 72 0.0016 32.8 2.6 54 523-589 214-269 (269)
406 PF04531 Phage_holin_1: Bacter 21.3 64 0.0014 27.2 1.9 21 567-587 10-30 (84)
407 PF08621 RPAP1_N: RPAP1-like, 21.2 1.1E+02 0.0024 23.2 2.9 27 16-42 10-38 (49)
408 PRK11619 lytic murein transgly 21.1 2.5E+02 0.0054 32.8 7.3 52 157-208 323-374 (644)
409 PRK10132 hypothetical protein; 20.5 81 0.0018 28.0 2.4 65 521-586 39-103 (108)
410 KOG4563 Cell cycle-regulated h 20.5 1E+02 0.0022 33.3 3.5 71 100-205 38-108 (400)
411 KOG0529 Protein geranylgeranyl 20.2 54 0.0012 35.7 1.5 119 93-220 99-235 (421)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.3e-21 Score=196.69 Aligned_cols=122 Identities=28% Similarity=0.367 Sum_probs=116.6
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
....++.+|..||.+.+.++|.+|+.+|.+||+++|.++. +|.||+.+|.++|.|+.||++|+.||.+||.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---------yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ 147 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---------YYCNRAAAYSKLGEYEDAVKDCESALSIDPH 147 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---------HHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence 4557889999999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+.++|.|+|.+|+.+|+|++|++.|++||+++|++...++.|..++.++.+
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999888853
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.6e-17 Score=168.86 Aligned_cols=134 Identities=37% Similarity=0.542 Sum_probs=122.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeeccccceeeeccccchhhhhhccee
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A 172 (591)
..+.+...+..||.||+.|+|..|+..|++|+...+.+.. .....++..|++|++.||+++++|.+|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 5566788999999999999999999999999998775432 2355678889999999999999999999999999
Q ss_pred eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
|+++|+|++++||+|.||..+++|+.|+.+|+++++++|.|..+...|..+..+++.+..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877654
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=6.4e-16 Score=166.47 Aligned_cols=162 Identities=19% Similarity=0.118 Sum_probs=146.1
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
+++-.+...|.++++..+.-..++.++||+|...+.|++|+.+|.+|+.+.|.... ++.|+|.+|+.+|..
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~---------a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV---------AHGNLACIYYEQGLL 302 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh---------hccceEEEEeccccH
Confidence 35566778889999999999999999999999999999999999999999998755 899999999999999
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 242 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~ 242 (591)
+-||..|+++|+++|+.+.+|+|+|.++.+.|+..||+.+|.+||.+.|+++++..+|+.++...+..+.+..-|.+.+
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al- 381 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL- 381 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877766666655
Q ss_pred HHHHhhhccccC
Q 007725 243 EITEEVGAVSSG 254 (591)
Q Consensus 243 e~~e~~~~~~~~ 254 (591)
++.++..++.+.
T Consensus 382 ~v~p~~aaa~nN 393 (966)
T KOG4626|consen 382 EVFPEFAAAHNN 393 (966)
T ss_pred hhChhhhhhhhh
Confidence 566666555443
No 4
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=4e-16 Score=148.64 Aligned_cols=125 Identities=24% Similarity=0.358 Sum_probs=114.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
+...+..++..||.+|+.|+|.+|...|.+||.++|..+. +++..||.|||.|++++++++.||.+|+++|+|+|.
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 4567889999999999999999999999999999988764 567789999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+.+++.||+.+|..+.+|++|+.+|++.++++|....+...+.++...+
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999999877777666654444
No 5
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.1e-15 Score=159.12 Aligned_cols=134 Identities=22% Similarity=0.348 Sum_probs=124.9
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
.+.+..+.......+++.+...+..||.+|+.|+|..|+.+|++||..+|+++. +|.||+.||.+++.|..
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------LYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------HHHHHHHHHHHHhhHHH
Confidence 455666666666678888999999999999999999999999999999999976 89999999999999999
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
|+.+|..+|+++|++.++|+|.|.|+..+.+|++|++.|++++++||++.++...+.+|...+
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987776
No 6
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.7e-15 Score=151.91 Aligned_cols=144 Identities=22% Similarity=0.249 Sum_probs=127.2
Q ss_pred HHHHHHHHhhhhccc------------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecc
Q 007725 83 EEIATMRARIDAQMN------------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL 150 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~------------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~ 150 (591)
.+.+.+.+.+++.+. ..++..+.++..||.+|+.|+|.+|.++|.++|.++|.+.. ..+.||.
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----~naklY~ 291 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----TNAKLYG 291 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----hhHHHHH
Confidence 344555566666555 35567788999999999999999999999999999998753 4677999
Q ss_pred ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
|||.++.++|+.++||.+|+.|++|||.+.++|.+||.||..+++|++|++||++|+++.-+ .+++..|.++...|++.
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999877 88999999999998876
Q ss_pred cC
Q 007725 231 DG 232 (591)
Q Consensus 231 ~~ 232 (591)
+.
T Consensus 371 kR 372 (486)
T KOG0550|consen 371 KR 372 (486)
T ss_pred hh
Confidence 54
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.48 E-value=6.4e-15 Score=137.28 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=108.2
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHH
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~ 185 (591)
+...|..++..|+|++|+.+|.+++.++|.++. +|.++|.++.++|+|++|+..|+++++++|+++.++++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---------AHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 556799999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 186 rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
+|.+|..+|++++|+..|+++++++|+++..+..++.++..+.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877664
No 8
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.2e-14 Score=142.28 Aligned_cols=161 Identities=29% Similarity=0.376 Sum_probs=133.7
Q ss_pred CCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhh
Q 007725 51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAK 130 (591)
Q Consensus 51 ~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL 130 (591)
.|..+..+++.|....|+++....| +.+.++ ..+.+..+...||.+|+.|+|.+|+.+|..||
T Consensus 143 nPqpL~FviellqVe~P~qYq~e~W---qlsdde--------------Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 143 NPQPLVFVIELLQVEAPSQYQRETW---QLSDDE--------------KMKAVPVLHQEGNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred CCCceEeehhhhhccCchhhccccc---cCCchH--------------hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHH
Confidence 4677777889999889998887665 333334 45567789999999999999999999999998
Q ss_pred hcc--------cccccc-ccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 131 KNL--------QGIHSS-EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 131 ~l~--------p~~~~~-e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
-.. |.+|.| ++.....++++|.++|++..++|.++++.|..+|+.+|+|.++||+||.|+...-+.++|.+
T Consensus 206 ~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 206 ICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred HHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 754 344432 35556778999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCCh-HHHHHhHHHHHhh
Q 007725 202 DLSNAHEVSPDDGT-IADVLRDAKEILM 228 (591)
Q Consensus 202 ~lekAl~l~P~~~~-a~~~L~~a~~~l~ 228 (591)
||.++|+++|.-.. +...|..++.+..
T Consensus 286 D~~~vL~ldpslasvVsrElr~le~r~~ 313 (329)
T KOG0545|consen 286 DLQKVLELDPSLASVVSRELRLLENRMA 313 (329)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 99999999998654 4556666655553
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=1.2e-14 Score=156.75 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=108.2
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
+.+.++...|.+.+.+.+..++++.++||.+...|.+++|+.+|.++++..|.... ++.|+|.+|.++|++
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa---------a~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA---------AHNNLASIYKQQGNL 404 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh---------hhhhHHHHHHhcccH
Confidence 34555666677777777777777777777777777777777777777777666543 677777777777777
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~ 240 (591)
++|+.+|.+||+|+|..+++|.|+|.+|.++|+..+|+.+|.+|+.++|...+++.+|+.+.+..+....+...|+..
T Consensus 405 ~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777776666555555554443
No 10
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.45 E-value=2.1e-14 Score=146.10 Aligned_cols=117 Identities=24% Similarity=0.326 Sum_probs=107.3
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
++....++..||.||++|+|++||.||.+++.+.|.+|- +|.||+.+|+++++|..|..+|+.||.+|-.+
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---------YHINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---------chhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 444556899999999999999999999999999998875 79999999999999999999999999999999
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
.++|.||+.+...+|...||.++|+.+|++.|++.+....+..+..
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998777666665533
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=7.5e-14 Score=147.74 Aligned_cols=120 Identities=21% Similarity=0.343 Sum_probs=103.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
..+.+..++++||.+|+.|+|++||.+|.+||.++|+.|. .|.||+.||..+|+|++.+++|++||+++|+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi---------FYsNraAcY~~lgd~~~Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI---------FYSNRAACYESLGDWEKVIEDCTKALELNPD 181 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch---------hhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence 4567889999999999999999999999999999999865 7999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCC-CCChHHHHHhHHHHHh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-DDGTIADVLRDAKEIL 227 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P-~~~~a~~~L~~a~~~l 227 (591)
++++++||+.++-.+|++++|+.|+.-..-++- ++..+.-.+.++..++
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence 999999999999999999999999885443332 3444555555554444
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.40 E-value=5.4e-14 Score=150.10 Aligned_cols=117 Identities=17% Similarity=0.295 Sum_probs=111.6
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.++..|+.+|..|+|.+|+.+|.++|.++|.++. +|+++|.||+++|+|++|+.+|+++|.++|+++.+|+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~ 74 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 4778899999999999999999999999999866 8999999999999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
++|.+|..+|+|++|+.+|+++++++|++..+...+..|...+...
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988543
No 13
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-13 Score=140.17 Aligned_cols=243 Identities=19% Similarity=0.170 Sum_probs=153.4
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (591)
Q Consensus 97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld 176 (591)
....+.+.-.+..+...+..|.+++||+.|..+|.++|.... +|.+|+.+|++++++..||++|..||+|+
T Consensus 108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~---------l~~kr~sv~lkl~kp~~airD~d~A~ein 178 (377)
T KOG1308|consen 108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI---------LYAKRASVFLKLKKPNAAIRDCDFAIEIN 178 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh---------hcccccceeeeccCCchhhhhhhhhhccC
Confidence 344555667778888899999999999999999999998755 89999999999999999999999999999
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHH--hhhcc-cc
Q 007725 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITE--EVGAV-SS 253 (591)
Q Consensus 177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e~~e--~~~~~-~~ 253 (591)
|+.++.|-.||.++..+|+|++|..+|+.+++++.+ ..+-..|.++....+..++....++...++... ..... ..
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~ 257 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYA 257 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999999865 333444444444333322221111111111000 00000 00
Q ss_pred CCcCCc-chhhhhhhcCCCCCcccccCCCCCCCCCCCCC----------CCCCChH------hHHHHHhhhhccCCcchh
Q 007725 254 GSHRSS-GTEYLAREKADPSKSEHSANGRGSSTKPEFLP----------DLKDDPE------SIRSFQNFISNANPDSFA 316 (591)
Q Consensus 254 ~~~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------al~~~Pe------~~~a~~~~i~~~dpe~l~ 316 (591)
...... ..+... ..........+.++.++.++...+ ....++- .+= +.+.++ |||.++
T Consensus 258 r~~~e~~~~e~~k--~~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~g-i~ki~~--dpev~a 332 (377)
T KOG1308|consen 258 REPEEMANPEEFK--RMLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIG-ISKILS--DPEVAA 332 (377)
T ss_pred cchhhhcChhhhh--hhhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCccccCCCccc-HhhhcC--chHHHH
Confidence 000000 000000 000001111122222222221111 1111111 111 334433 788888
Q ss_pred hccCCCcccCCchhhhHHHHHhcCCCHHHHHHHHHHhh
Q 007725 317 ALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIAS 354 (591)
Q Consensus 317 ~m~~~~~g~~~pdm~K~a~~mm~~mspeel~~m~~~as 354 (591)
+++.+...-.-+|.+|...+|+++.+..++-.++.+-+
T Consensus 333 Afqdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~ 370 (377)
T KOG1308|consen 333 AFQDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLS 370 (377)
T ss_pred hhcChHHHhhhhhcccChHHHHHhccChHHHHHHHHHH
Confidence 88776666677899999999999999999999988644
No 14
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.6e-13 Score=145.49 Aligned_cols=112 Identities=24% Similarity=0.318 Sum_probs=107.4
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~ 183 (591)
..++.+||.+|..|+|+.|+.+|..+|.++|.+.- +|.||..||..+++|.+|+++..+.++++|+++++|
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv---------lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy 73 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV---------LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGY 73 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc---------hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHH
Confidence 45789999999999999999999999999999754 899999999999999999999999999999999999
Q ss_pred HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725 184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (591)
Q Consensus 184 ~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~ 224 (591)
+++|.++..+|+|++|+..|.+.|+++|++......|..+.
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999999999998887
No 15
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=6.1e-13 Score=130.61 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=118.4
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee-eccc
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTK 160 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y-~~lg 160 (591)
.++.+.+...++..++.+++.++.|..+|..+...|+|++|+.+|.+++.+.|+++. +++++|.|+ +..|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------~~~~lA~aL~~~~g 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------LYAALATVLYYQAG 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcC
Confidence 345667777888889999999999999999999999999999999999999999876 789999985 6778
Q ss_pred c--chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 161 Q--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 161 ~--y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
+ +++|++.++++++++|+++.+++++|.++..+|+|++|+.+|+++++++|.+..-...++.
T Consensus 123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 7 5999999999999999999999999999999999999999999999999987654444433
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=3.7e-13 Score=122.50 Aligned_cols=127 Identities=18% Similarity=0.293 Sum_probs=115.0
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcce
Q 007725 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (591)
Q Consensus 92 ~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~ 171 (591)
++..+...++....+..+|..++..|+|++|+..|++++.+.|.++. +|.++|.||++.|+|.+|+..|++
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------YWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777888999999999999999999999999999988866 799999999999999999999999
Q ss_pred eeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 172 AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+++++|+++..++++|.+|...|++++|+..|+++++++|++.........+...+
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988777777665544
No 17
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.9e-13 Score=135.04 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=99.9
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
+.++.++..||.||+..+|..|+.+|.++|...-.+++ +.+.+|.||++|.+-+|+|+.||.+|.+|+.++|.+.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 36889999999999999999999999999998766654 5688999999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
++|||=+.|++++.++.+|+.+++..+.++-+..
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999999999999999999999999888764443
No 18
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.7e-12 Score=131.19 Aligned_cols=91 Identities=24% Similarity=0.264 Sum_probs=80.6
Q ss_pred ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
+-|.=+.+-++|++|+..|++||+++|.++.+|++|+.||.++|+|+.||+++++|+.+||++.++|.+|+.++..++++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 45555678899999999999999999999999999999999999999999999999999999999999999998888766
Q ss_pred cCCCCCccchH
Q 007725 231 DGHHGPRGLLI 241 (591)
Q Consensus 231 ~~a~~~~~~~i 241 (591)
..+...|++.+
T Consensus 166 ~~A~~aykKaL 176 (304)
T KOG0553|consen 166 EEAIEAYKKAL 176 (304)
T ss_pred HHHHHHHHhhh
Confidence 55555555444
No 19
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=3.1e-11 Score=123.34 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=97.2
Q ss_pred cccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725 112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (591)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~ 191 (591)
.....++|.++++.|++.++.+|..+. +....+.-++.||..-+++.+||+.|.++|.++|+++.+++.|+.+|.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~-----ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETM-----IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccc-----eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 345566666677777777666665432 344455668999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 192 ~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
.-..|++|+.+|++|++++++|..+...+..+++...+.+
T Consensus 353 ~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988776654
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.25 E-value=1e-12 Score=149.94 Aligned_cols=150 Identities=9% Similarity=0.003 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.+...++..+...+.....+..+|..++..|+|++|+..|.++++++|.++. +|+++|.+|+..|+|
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLHFIKGEF 415 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence 34556777777877778888888888888888888888888888888888887765 788888888888888
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++|+.+|+++++++|++..+|+++|.++..+|++++|+..|++++.+.|+++.++..++.+....++..++...++..+
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888887776666655555444
No 21
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=2.8e-12 Score=119.87 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=101.9
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
.+.-+.++..|..++..|+|++|+..|+-...++|.+.. .|+|+|.|+..+|+|.+||..|.+|+.++|++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344567899999999999999999999999999999876 89999999999999999999999999999999
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~ 224 (591)
+.++++.|.||+.+|+.+.|.+.|+.|+.+.-.+++-.....+++
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAE 147 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 999999999999999999999999999998744443333333333
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=5.4e-12 Score=138.30 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=122.0
Q ss_pred ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725 96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (591)
Q Consensus 96 l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l 175 (591)
....+..++.|...||++--+++++.||++|++||+++|++ .++|.-+|.=+....+|+.|..+|+.||.+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f---------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF---------AYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc---------chhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 33577788899999999999999999999999999998886 458888999999999999999999999999
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 176 dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+|++..|||-+|.+|.++++++.|.-.|++|++++|.+..+...++.++.++++.+++..-+++.+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888887776655444433
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.20 E-value=3.7e-12 Score=150.96 Aligned_cols=141 Identities=4% Similarity=-0.081 Sum_probs=119.9
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.|...+++.+...+. +..+.++|.++.+.|++++|+.+|.+++.+.|+++. ++.|+|.++...|++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------YQAALGYALWDSGDI 659 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCH
Confidence 3455677777777877886 788899999999999999999999999999888875 788999999999999
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+.......+++
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888887777776655544443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.20 E-value=7.9e-12 Score=148.18 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=144.8
Q ss_pred ccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHH
Q 007725 48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL 127 (591)
Q Consensus 48 ~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~ 127 (591)
...+.++....++++...+|........-......+++..+...+++.++..+.....+..++..+...|+|++|+..|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45556666666665544433322211111112233455667777777777666666666666666677799999999999
Q ss_pred HhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 128 kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
++++++|. +. +|+++|.++.++|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++
T Consensus 601 ~AL~l~P~-~~---------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 601 RSLNIAPS-AN---------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHhCCC-HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999986 44 789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 208 EVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 208 ~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+++|+++.++..++.+...+++...+...++..+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999988877666666555
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.19 E-value=2.9e-12 Score=146.29 Aligned_cols=149 Identities=13% Similarity=0.030 Sum_probs=131.0
Q ss_pred HHHHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 84 EIATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 84 e~~~a~~~~~~~l~~---~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
.++.+...++..+.. .+..+..+..+|.+++..|+|++|+..|.++|.++|.++. +|+++|.+|..+|
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---------~~~~la~~~~~~g 379 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ---------SYIKRASMNLELG 379 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHCC
Confidence 455566666666543 4677889999999999999999999999999999988765 7899999999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~ 240 (591)
+|++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+...+++...+...++..
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888776655555444
Q ss_pred H
Q 007725 241 I 241 (591)
Q Consensus 241 i 241 (591)
+
T Consensus 460 l 460 (615)
T TIGR00990 460 K 460 (615)
T ss_pred H
Confidence 4
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=9.8e-12 Score=129.46 Aligned_cols=105 Identities=21% Similarity=0.114 Sum_probs=100.7
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
..+..++.+|..+...|++.+|+..|.++++++|+++. +|+++|.+|...|+|++|+..|+++|+++|++.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 44778999999999999999999999999999999876 899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
.+|+++|.++...|++++|+.+|+++++++|+++
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999987
No 27
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.14 E-value=2.1e-11 Score=130.11 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=113.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
++.++++++.+++...|+.|+..|.+||+++|++.. +|.||+.+|++.++|..|+.++.+||+++|.+.++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---------~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~ 74 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---------YFANRALAHLKVESFGGALHDALKAIELDPTYIKA 74 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee---------eechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence 567899999999999999999999999999998854 89999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
|+++|.++..++++.+|+.+|++...+.|+++.+...+.+|.....++
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887653
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=1e-11 Score=140.07 Aligned_cols=186 Identities=10% Similarity=-0.007 Sum_probs=146.1
Q ss_pred hhhhhccCCCchhhh---hhhhhcCCChhHHHHHHHHhh----------cCChHHHHHHHHhhhhcccccchHHHHHHHh
Q 007725 43 ATENMKNMRPEDLKC---AAEQLTHTPPEEVAEIGEKLA----------NASPEEIATMRARIDAQMNYEFNAAKMLKKQ 109 (591)
Q Consensus 43 A~e~m~~~~pe~~~~---a~e~l~~~~pee~~a~~~k~~----------~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~ 109 (591)
+...+...+++++.. .+++.....|........... .....++..+...+++.+...++.+.++..+
T Consensus 265 g~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~l 344 (553)
T PRK12370 265 GKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLL 344 (553)
T ss_pred hHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333344445554443 344445566665544322211 1123457788888999999999999999999
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189 (591)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a 189 (591)
|..+...|+|++|+.+|+++++++|+++. +|+++|.+|...|++++|+..|+++++++|.++.+++.++.+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISAD---------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999999999876 789999999999999999999999999999999888888888
Q ss_pred hhhhhhHHHHhhhcccccccC-CCCChHHHHHhHHHHHhhhccCCCCCc
Q 007725 190 YKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILMKEDGHHGPR 237 (591)
Q Consensus 190 l~~lg~~eeAl~~lekAl~l~-P~~~~a~~~L~~a~~~l~~~~~a~~~~ 237 (591)
++..|++++|+..+++++... |+++.++..++.+...+++.+++....
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888999999999999998875 778888888998888777766554443
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=1.4e-11 Score=138.92 Aligned_cols=145 Identities=10% Similarity=-0.037 Sum_probs=124.7
Q ss_pred hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccc---------ccccchhHHHHHHHhhhccccccccccceeeee
Q 007725 77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY---------SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA 147 (591)
Q Consensus 77 ~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~---------~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~ 147 (591)
+....++.++.+...+++.+...++.+.++..+|.+++ ..+++++|+..|+++++++|+++.
T Consensus 269 ~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~--------- 339 (553)
T PRK12370 269 LNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ--------- 339 (553)
T ss_pred HHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---------
Confidence 33446677888999999999999999988888887654 345689999999999999999876
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+|..+|.++...|+|++|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|.+..+...+..+....
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999887655544444444
Q ss_pred hhc
Q 007725 228 MKE 230 (591)
Q Consensus 228 ~~~ 230 (591)
+++
T Consensus 420 g~~ 422 (553)
T PRK12370 420 TGI 422 (553)
T ss_pred cCH
Confidence 433
No 30
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.9e-11 Score=117.63 Aligned_cols=116 Identities=29% Similarity=0.306 Sum_probs=103.6
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+..++..||.+|...+|..||.+|.+||.++|..+. +|.|++.||+++++|+.+.++|.+|+.++|+.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---------Y~tnralchlk~~~~~~v~~dcrralql~~N~vk 79 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---------YYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch---------hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence 4567899999999999999999999999999998755 8999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCC-----CCChHHHHHhHHHHH
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-----DDGTIADVLRDAKEI 226 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P-----~~~~a~~~L~~a~~~ 226 (591)
++|-+|.++.....|++|+..+.+|+.+-- .-.++...|..+++.
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 999999999999999999999999965532 234677777777553
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=3.4e-11 Score=116.63 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=133.1
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e 121 (591)
+...+...+.++....+++.....|+........ ......++++.+...+...+...+.....+..+|..++..|+|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHH
Confidence 4444555666666665555555555544433332 111223455667777777777777778888899999999999999
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
|+..|.+++...+. +. ....+.++|.||...|++++|+..|.++++++|++..+++.+|.++...|++++|+.
T Consensus 118 A~~~~~~~~~~~~~-~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 118 AMQQFEQAIEDPLY-PQ------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHHHhcccc-cc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999875321 11 123678889999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 202 DLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
.+++++.+.|.+...+..+..+....++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDV 219 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 99999988887777766666666555443
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.07 E-value=3.2e-11 Score=138.74 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=93.3
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh----hhhhcceeeeccccchHH
Q 007725 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE----CIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e----Ai~~~~~AL~ldP~~~~a 182 (591)
...+..++..|+|++|+..|.+++...|.++. +++++|.+|...|++++ |+..|+++++++|+++.+
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a 286 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAA---------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI 286 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34466677778888888888888887777654 67778888888888775 678888888888888888
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
++.+|.+|...|++++|+..|++++.++|++..++..++.+....++..++...+..
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888888888888888888888888877777777777777666655444443
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.05 E-value=4.2e-11 Score=137.72 Aligned_cols=150 Identities=12% Similarity=0.044 Sum_probs=130.9
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh----HHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN----ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e----Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~ 158 (591)
.+++.+...+.+.+...++.+..+..+|..++..|+|++ |+..|++++.+.|.++. ++.++|.+|.+
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~ 296 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---------IVTLYADALIR 296 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHH
Confidence 345567777888888888899999999999999999986 89999999999998765 78999999999
Q ss_pred cccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
.|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++..+|++..++..++.+...+++.+++...++
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987766667777777777666555555
Q ss_pred chH
Q 007725 239 LLI 241 (591)
Q Consensus 239 ~~i 241 (591)
..+
T Consensus 377 ~al 379 (656)
T PRK15174 377 HYI 379 (656)
T ss_pred HHH
Confidence 444
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=8.3e-11 Score=129.13 Aligned_cols=147 Identities=15% Similarity=0.121 Sum_probs=103.8
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.+...|..++...++.-.+|+-+|.+|.++++|+.|.-+|.+|++++|.+.. +..-+|..|.++|+.
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---------i~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---------ILCHIGRIQHQLKRK 539 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---------HHhhhhHHHHHhhhh
Confidence 45666667777777777777777777777777777777777777777777766532 445566677777777
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
++|+..|++|+.+||.++-..|.+|.+++.+++|++|+..|++.-++.|++..++..++++...+++..-+...+.
T Consensus 540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 7777777777777777777777777777777777777777777777777777777777777777766655544433
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.3e-10 Score=113.72 Aligned_cols=180 Identities=16% Similarity=0.039 Sum_probs=122.1
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e 121 (591)
+.+.|.+.+......-.+.....+|..+.++.-+ ...+.-.+.+.+...|++++...++..+.+.|.|..++.+|+|++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 6666666666666666666666666666654443 223334456667777777777777777777777877777777777
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
|...|++|+. +|..+. ....|.|+|.|.++.|+++.|..+|+++|++||+++....-++..+++.|+|..|..
T Consensus 122 A~q~F~~Al~-~P~Y~~------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 122 AMQQFERALA-DPAYGE------PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred HHHHHHHHHh-CCCCCC------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8777777776 344333 344677777777777888778777888888788777777777777777777777777
Q ss_pred hcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 202 DLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
.+++...--+-..+......++.+.+++
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 7777666555444444444444444443
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.03 E-value=2.9e-11 Score=112.67 Aligned_cols=108 Identities=6% Similarity=-0.119 Sum_probs=99.8
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
-..+|+++++++|.+ ++++|.++...|+|++|+..|++++.++|.+..+|+++|.++..+|++++|+.
T Consensus 12 ~~~~~~~al~~~p~~------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 12 PEDILKQLLSVDPET------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHHcCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 456799999998775 45789999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 202 DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
.|++++.++|+++.++..++.+...+++..++...+...+
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998888877777665
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.02 E-value=3.9e-11 Score=116.21 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=127.0
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.+...+.+.+...+.....+..+|..++..|++++|+..|.+++++.|.++. ++.+++.+|...|+|
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---------VLNNYGTFLCQQGKY 115 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcccH
Confidence 34556777777777777888899999999999999999999999999999887754 788999999999999
Q ss_pred hhhhhhcceeeecc--ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 163 DECIKVGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 163 ~eAi~~~~~AL~ld--P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
++|+..|.+++... +.....++++|.++...|++++|+..|++++..+|++..++..++.+....++...+....+
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999753 56778999999999999999999999999999999999999999988888776655444333
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.02 E-value=4.9e-11 Score=136.69 Aligned_cols=141 Identities=6% Similarity=-0.070 Sum_probs=125.1
Q ss_pred hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhccee
Q 007725 93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (591)
Q Consensus 93 ~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A 172 (591)
..-....++.++++..+|......|+|++|+..|..++++.|++.. ++.+++.++.+.+++++|+..|+++
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------AFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333446667889999999999999999999999999999998865 8899999999999999999999999
Q ss_pred eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725 173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 242 (591)
Q Consensus 173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~ 242 (591)
+..+|+++.+++.+|.++..+|+|++|++.|++++..+|+++.++-.++.+....++.+.+...++..++
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888877666666653
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.3e-10 Score=125.94 Aligned_cols=206 Identities=14% Similarity=0.053 Sum_probs=167.0
Q ss_pred ChhHHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccc
Q 007725 36 NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY 114 (591)
Q Consensus 36 ~p~l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~ 114 (591)
.|+-+......|+++...+..-++|......|++++++.+. +....-+.-..+...+.+.++..+.+-+++..++..|.
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 35666778888999888888889999999999999998886 22222233335666677788889999999999999999
Q ss_pred ccccchhHHHHHHHhhhccccccc----------------------------------cccceeeeeeccccceeeeccc
Q 007725 115 SEGRFSNALQKYLLAKKNLQGIHS----------------------------------SEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l~p~~~~----------------------------------~e~~~l~~~~~~Nla~~y~~lg 160 (591)
..|.-.+|+.++.+=|...|.... ......-..++.-||.+|+-.+
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888888888887776665542211 0011123346778999999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~ 240 (591)
+|++|+.+|+.||..+|++...|.++|.++..-.+.+|||..|++|++|.|.+..++.+|+...-.++.++++.+.+-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877665554
Q ss_pred H
Q 007725 241 I 241 (591)
Q Consensus 241 i 241 (591)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=1.6e-10 Score=120.27 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=46.3
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
..+...+++.+..+++.+..+..+|..+...|+|++|+..|.++++++|++.. +|.|+|.+|+..|+|++|
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHH
Confidence 34444455555555555555555555555555555555555555555555433 455555555555555555
Q ss_pred hhhcceeeeccccch
Q 007725 166 IKVGSEVLAYDAKNV 180 (591)
Q Consensus 166 i~~~~~AL~ldP~~~ 180 (591)
+++|+++++++|+++
T Consensus 152 ~~~~~~al~~~P~~~ 166 (296)
T PRK11189 152 QDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHhCCCCH
Confidence 555555555555443
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=2.2e-10 Score=124.17 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=115.2
Q ss_pred HHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 86 ATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 86 ~~a~~~~~~~l~~~~--~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
...+..|-......+ ..++....+|..|+-.|+|++|+.||+.||...|.+.. +|+.+|..+....++.
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---------lWNRLGAtLAN~~~s~ 481 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---------LWNRLGATLANGNRSE 481 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---------HHHHhhHHhcCCcccH
Confidence 333344444434444 56788889999999999999999999999999999865 8999999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC----------ChHHHHHhHHHHHhhh
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----------GTIADVLRDAKEILMK 229 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~----------~~a~~~L~~a~~~l~~ 229 (591)
+||..|++||+|.|.+++++||+|.++..+|.|.||+++|-.||.+.++. ..+|..|+.+.....+
T Consensus 482 EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 482 EAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999998761 2488888876665543
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.93 E-value=2.1e-10 Score=139.99 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=109.0
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHH--------------HHHHHhcc
Q 007725 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAA--------------KMLKKQGN 111 (591)
Q Consensus 47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a--------------~~lk~~Gn 111 (591)
+...+.++....+++.....|+......... .....++++.|...+.+.++..++.. ..+..+|.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 3344455555555555555555444433321 11122344455555555554443321 12234466
Q ss_pred cccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc--
Q 007725 112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA-- 189 (591)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a-- 189 (591)
.+++.|++++|+.+|++++.+.|.++. +++++|.||...|++++|++.|+++++++|++..++..++.+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~---------a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSY---------AVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 666777777777777777777666543 567777777777888888888888877777776665544433
Q ss_pred ----------------------------------------hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 190 ----------------------------------------YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 190 ----------------------------------------l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+...|++++|+..|+++++++|+++.++..++.+....++
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3345777777777788877777777777777777666666
Q ss_pred ccCCCCC
Q 007725 230 EDGHHGP 236 (591)
Q Consensus 230 ~~~a~~~ 236 (591)
.+++...
T Consensus 511 ~~~A~~~ 517 (1157)
T PRK11447 511 RSQADAL 517 (1157)
T ss_pred HHHHHHH
Confidence 5554333
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=9.9e-11 Score=114.97 Aligned_cols=121 Identities=11% Similarity=0.004 Sum_probs=110.8
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch-hh
Q 007725 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KD 192 (591)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al-~~ 192 (591)
...++.++++..|.++++.+|+++. .|.++|.+|...|+|++|+..|+++++++|+++..++.+|.++ ..
T Consensus 50 ~~~~~~~~~i~~l~~~L~~~P~~~~---------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 50 ASQQTPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ 120 (198)
T ss_pred cCchhHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3478889999999999999999976 8999999999999999999999999999999999999999986 67
Q ss_pred hhh--HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHH
Q 007725 193 IGR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE 243 (591)
Q Consensus 193 lg~--~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e 243 (591)
.|+ +++|+..|+++++++|++..++..++.+....++++++...++..++-
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 787 599999999999999999999999999999999988887777776643
No 44
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-10 Score=120.35 Aligned_cols=158 Identities=17% Similarity=0.114 Sum_probs=134.2
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc---cceeeeeeccccceeeeccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~Nla~~y~~lg 160 (591)
+...++.+....++.....+++++..|.+++-..+.+.|+.+|.++|.++|++.... ...-....+.++|.-.++.|
T Consensus 184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 455677788888888999999999999999999999999999999999999875411 00111225678888889999
Q ss_pred cchhhhhhcceeeecccc----chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007725 161 QYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~ 236 (591)
+|.+|.+.|+++|.+||+ +++.|++|+.++.++|+..+|+.+++.|+.|||.+-+++.+.+.|+..+++.+++.+.
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 4778999999999999999999999999999999999999999998888887766555
Q ss_pred ccchH
Q 007725 237 RGLLI 241 (591)
Q Consensus 237 ~~~~i 241 (591)
++..+
T Consensus 344 ~~~a~ 348 (486)
T KOG0550|consen 344 YEKAM 348 (486)
T ss_pred HHHHH
Confidence 55544
No 45
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.90 E-value=2.1e-10 Score=101.07 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=98.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 179 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--- 179 (591)
++.++.+|..+++.|+|++|+..|.+++...|+++. ...+++++|.||++.++|++|+..|.+++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 356889999999999999999999999998877642 23368889999999999999999999999999885
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~ 219 (591)
+.+++.+|.++..++++++|+..|++++...|++..+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 6789999999999999999999999999999998765443
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=9.5e-10 Score=107.79 Aligned_cols=144 Identities=13% Similarity=-0.010 Sum_probs=129.0
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
.-++...|+..++++++..+....++..++..|.+.|..+.|-+.|++|+.+.|++.+ +++|.|..+...|
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------VLNNYG~FLC~qg 117 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------VLNNYGAFLCAQG 117 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---------hhhhhhHHHHhCC
Confidence 3456778999999999999999999999999999999999999999999999999876 8999999999999
Q ss_pred cchhhhhhcceeeec--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 161 QYDECIKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 161 ~y~eAi~~~~~AL~l--dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
+|++|...|++|+.. -+...+.|-|+|.|-.+.|+++.|.++|+++++++|+++.....+...+..-+++-.+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999863 2456789999999999999999999999999999999998888887777766655443
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.89 E-value=1.3e-10 Score=119.61 Aligned_cols=134 Identities=20% Similarity=0.143 Sum_probs=103.7
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
....+..+...|..+.+.|++++|+++|+++|++.|+++. +...++.++...|+++++.+.+....+..|+
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 3467788999999999999999999999999999999876 6778899999999999988888888888899
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++..+..+|.+|..+|++++|+.+|+++++.+|+|+.++..++.+....++.+.+..-+....
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999998888766655544
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.1e-10 Score=117.90 Aligned_cols=147 Identities=14% Similarity=0.055 Sum_probs=104.3
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi 166 (591)
.+...++++++.+++...+|--.|..|....+...||+.|++|++++|.|-. +|+.+|++|--++-+.=|+
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---------AWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---------AWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---------HHhhhhHHHHHhcchHHHH
Confidence 4555566666667777777777777777777777777777777777776644 6777777777777666777
Q ss_pred hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 242 (591)
Q Consensus 167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~ 242 (591)
-+|++|+++.|.+...|..+|.||.++++.++|+++|.+|+...-.+..++-.|+.+.+.+++.+++...+++.++
T Consensus 419 yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 419 YYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777776666667777777777777777776666666664
No 49
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.87 E-value=5.2e-10 Score=129.85 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=110.1
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
+..+...+...+...+.....+..+|..+...|++++|+..|+++++..|.++. ++.+++.+|...|+ .+
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV---------VLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCc-HH
Confidence 445555566666667777788888888888888888888888888888777654 67788888888888 77
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
|+..+++++.+.|+++..+..+|.++...|++++|+.+|+++++++|.++.++..+..+..+.++..++
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888888888888888888888888888888888877776654443
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.85 E-value=7.7e-10 Score=135.07 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=120.8
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc---------------------
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG--------------------- 141 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~--------------------- 141 (591)
.+++.|...+++.+...+..+..+..+|.++...|+|++|+++|++++++.|.+.....
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 35667888888888889999999999999999999999999999999999988653100
Q ss_pred ------------ceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 142 ------------RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 142 ------------~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
..+...++.+++.+|...|++++|++.|+++++++|+++.+++.+|.+|..+|++++|+..|++++++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 00111234456777888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHH
Q 007725 210 SPDDGTIADVLRDAKEI 226 (591)
Q Consensus 210 ~P~~~~a~~~L~~a~~~ 226 (591)
+|+++.++..++.....
T Consensus 525 ~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999887766654433
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=1.4e-10 Score=93.49 Aligned_cols=64 Identities=30% Similarity=0.512 Sum_probs=62.4
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh-hHHHHhhhcccccccCC
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-~~eeAl~~lekAl~l~P 211 (591)
.|.++|.+|+..++|++|+..|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 68899999999999999999999999999999999999999999999 89999999999999998
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-09 Score=118.21 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=120.5
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
+.-+..-+..++...|..+-.+..+|.++|..+.|.+|+.+|.+++...+.... +.. ...+.+.|+|.+|+++++|++
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~-~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKI-FWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-ccc-chhHHHHhHHHHHHHHhhHHH
Confidence 444555666667778888999999999999999999999999999965444322 111 235578999999999999999
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
||..|+++|.+.|.++.+|...|.+|..+|+++.|++.|.+||.++|++..+...|+.+.+.
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888888877655
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.4e-10 Score=118.31 Aligned_cols=130 Identities=18% Similarity=0.084 Sum_probs=121.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
++...-.||.|.-++++++|+.+|++||+++|.... +|.-.|.=|..+++-..||+.|++|++++|.+-++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~---------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS---------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 456677899999999999999999999999998754 89999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
||-+|++|.-++-+.=|+-+|++|+++.|+|+.+|..|++|..++.+..++...+..++
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888877766
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.5e-09 Score=115.63 Aligned_cols=211 Identities=13% Similarity=0.080 Sum_probs=175.0
Q ss_pred CcchHHHHHHHHhhChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhccccc
Q 007725 22 SPDDFARIQQQMMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYE 99 (591)
Q Consensus 22 ~p~~l~r~~~~~~~~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~ 99 (591)
+.+||.....---.++. +|+.|+-.++...++....-+......+|+.....+.|. ...-.++++.|..++++.+..+
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445443331123445 888888888888899888888888888888777766652 2234568999999999999999
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK- 178 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~- 178 (591)
++.+..+..++..+++++++.++...|+.++...|..++ +|.-.+.++...++|+.|++.|+.||++.|.
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---------vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---------VYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---------HHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999988 8888999999999999999999999999999
Q ss_pred -----chHHHHHhccchhh-hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 179 -----NVKALYRRGQAYKD-IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 179 -----~~~a~~~rg~al~~-lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++-.+.+.|.++.+ .+++..|+..+++|+++||.-..++..|+.++-+.++..++.+-+++.+
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888887776653 4789999999999999999999999999998888777766665555544
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=1.2e-09 Score=111.96 Aligned_cols=119 Identities=22% Similarity=0.263 Sum_probs=107.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.+..++.++.+|+.++.+|+|.+|+..|..|++.+|++-. +++.|+.+|+.+|+-..|+.+++++|++.|+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---------aifrRaT~yLAmGksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---------AIFRRATVYLAMGKSKAALQDLSRVLELKPD 104 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---------HHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence 4556788999999999999999999999999999998754 7899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHH
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEI 226 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~ 226 (591)
..-+...||.++.+.|++++|..+|+..|..+|.+. ++++.|..+.+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999653 556666655443
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=6.7e-10 Score=106.27 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=96.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.+..+..++.+|..+...|+|++|+.+|.+++.+.++.+. ...++.++|.||.++|+|++|+..|.+++.++|.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------RSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5566788999999999999999999999999998765432 1347899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhh--------------HHHHhhhcccccccCCCC
Q 007725 179 NVKALYRRGQAYKDIGR--------------LEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~--------------~eeAl~~lekAl~l~P~~ 213 (591)
+..+++.+|.+|..+|+ +++|+..+++++.++|++
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999998887 677888888888888876
No 57
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1.9e-09 Score=113.39 Aligned_cols=136 Identities=10% Similarity=-0.061 Sum_probs=122.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
..+.+...+...+..+++...++..+|.++...+ ++.+++..|.+++..+|.+.. +|.+|+.++.+++++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---------aW~~R~~~l~~l~~~ 122 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---------IWHHRRWLAEKLGPD 122 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---------HhHHHHHHHHHcCch
Confidence 3446777777888889999999999999999988 689999999999999998865 799999999888874
Q ss_pred --hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 163 --DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 163 --~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
.+++.+++++|++||+|..+|+.|+.++..+|+|++|++++.++++++|.|..+|.....+...++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 788999999999999999999999999999999999999999999999999999999998876653
No 58
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.80 E-value=6.2e-10 Score=90.70 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=91.4
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.++.+|..++..|+|.+|+..|.++++..|.++. ++++++.||...+++++|++.|++++.+.|.+...++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 72 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---------AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence 4677888999999999999999999999887653 6889999999999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCC
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
.+|.++...|++++|...+++++.++|+
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999988874
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=2.7e-09 Score=112.36 Aligned_cols=182 Identities=18% Similarity=0.155 Sum_probs=144.1
Q ss_pred HHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc----CChHHHHHHHHhhhhcccccchHHHHHHHhccccccc
Q 007725 41 RIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN----ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE 116 (591)
Q Consensus 41 r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~----~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~ 116 (591)
..|.+.|++.+.+....+...+...+.....+....+.. +...++..++...+.++....-++.++.++||..|..
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN 503 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec
Confidence 347777777777666665555544333332222222111 1233566666666666666666788999999999999
Q ss_pred ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhH
Q 007725 117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 196 (591)
Q Consensus 117 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ 196 (591)
|+|++|++.|++||..+..+.. +++|+|..+..+|+.++|+++|-+...+--+++..++.++.+|..+.+.
T Consensus 504 gd~dka~~~ykeal~ndasc~e---------alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTE---------ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHH---------HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 9999999999999998777655 7899999999999999999999988888889999999999999999999
Q ss_pred HHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 197 EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 197 eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
..|+++|-++..+-|+++.++..|+.+..+-++..
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 99999999999999999999999999877655543
No 60
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.79 E-value=4.6e-09 Score=121.97 Aligned_cols=182 Identities=15% Similarity=0.078 Sum_probs=128.8
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcc-cccchHHHHHHHhcccccccccch
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQM-NYEFNAAKMLKKQGNELYSEGRFS 120 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l-~~~~~~a~~lk~~Gn~~~~~g~y~ 120 (591)
+.-.+...+.++.....+++....|+......... .....+.++.+...+.... ...+..+..+..+|..++..|+|+
T Consensus 63 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (899)
T TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLE 142 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHH
Confidence 33344455566665555555554444322211110 0111123334444444332 234556778888899999999999
Q ss_pred hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh
Q 007725 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200 (591)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl 200 (591)
+|+..|.+++...|.++. +++.++.+++..|+|++|+..++++++.+|.+..+++.+|.++...|++++|+
T Consensus 143 ~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 213 (899)
T TIGR02917 143 LAQKSYEQALAIDPRSLY---------AKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL 213 (899)
T ss_pred HHHHHHHHHHhcCCCChh---------hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 999999999998887654 68888999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 201 SDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 201 ~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
.+|++++.++|++..++..+..+....++..++
T Consensus 214 ~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 214 AAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999998888887777776665554443
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.78 E-value=3.5e-10 Score=91.06 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=63.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDA 177 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP 177 (591)
.+..+..+|..++..|+|++|+.+|.++|+++|.++. +|+|+|.||.++| +|.+|+++|+++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4678999999999999999999999999999999876 8999999999999 89999999999999998
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=8e-10 Score=110.33 Aligned_cols=146 Identities=12% Similarity=-0.012 Sum_probs=117.4
Q ss_pred HHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-
Q 007725 84 EIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT- 159 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~---a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l- 159 (591)
+++.+...++..+...+.. ..+++.+|..++..|+|++|+..|.++++..|+++. ...+++++|.||...
T Consensus 48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~~g~~~~~~~ 121 (235)
T TIGR03302 48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD------ADYAYYLRGLSNYNQI 121 (235)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------hHHHHHHHHHHHHHhc
Confidence 4445666666655555543 467899999999999999999999999999998764 122467777777765
Q ss_pred -------ccchhhhhhcceeeeccccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC--
Q 007725 160 -------KQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-- 213 (591)
Q Consensus 160 -------g~y~eAi~~~~~AL~ldP~~~~a~-----------------~~rg~al~~lg~~eeAl~~lekAl~l~P~~-- 213 (591)
+++++|++.|+++++.+|++..++ +.+|.+|...|++.+|+..|++++...|++
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 899999999999999999986542 467888999999999999999999998765
Q ss_pred -ChHHHHHhHHHHHhhhccCCCC
Q 007725 214 -GTIADVLRDAKEILMKEDGHHG 235 (591)
Q Consensus 214 -~~a~~~L~~a~~~l~~~~~a~~ 235 (591)
.+++..++.+...+++..++..
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHH
Confidence 4788999999999887666544
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.75 E-value=7.9e-10 Score=92.97 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=72.8
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhh
Q 007725 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (591)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~ 195 (591)
.|+|++|+..|++++...|.++. ..+++++|.||++.|+|++|+..+++ +++++.+...++.+|.|+..+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~-------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN-------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH-------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChh-------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 58999999999999999885321 22678899999999999999999999 99999999999999999999999
Q ss_pred HHHHhhhcccc
Q 007725 196 LEEAVSDLSNA 206 (591)
Q Consensus 196 ~eeAl~~lekA 206 (591)
|++|+..|++|
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 64
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=3.5e-09 Score=111.41 Aligned_cols=168 Identities=10% Similarity=-0.042 Sum_probs=138.6
Q ss_pred CCCchhhhhhhhhcCCChhHHHHHHHHhh--cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc--hhHHHH
Q 007725 50 MRPEDLKCAAEQLTHTPPEEVAEIGEKLA--NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF--SNALQK 125 (591)
Q Consensus 50 ~~pe~~~~a~e~l~~~~pee~~a~~~k~~--~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y--~eAi~~ 125 (591)
-..++......++....|+....+..+.. ..-...++.+...+...+..+++....+..++..+.+.+++ .+++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 35556666677777788888887766521 11122456677778888888999999999999888777764 788999
Q ss_pred HHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh---hhH----HH
Q 007725 126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRL----EE 198 (591)
Q Consensus 126 Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l---g~~----ee 198 (591)
+.++|+.+|.+.. +|.+|+.++..+++|++++++|+++|++||.|..+|+.|+.++..+ +.+ ++
T Consensus 131 ~~kal~~dpkNy~---------AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 131 TRKILSLDAKNYH---------AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHhCcccHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 9999999998866 8999999999999999999999999999999999999999998776 333 57
Q ss_pred HhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 199 AVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 199 Al~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
++.++.+++.++|+|..+|..++-+...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 8999999999999999999999888654
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=6.3e-09 Score=119.52 Aligned_cols=124 Identities=8% Similarity=-0.106 Sum_probs=115.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
.++.+...++..+...|+.+.++.+.+..+++.+++++|+..+++++...|+++. .++++|.|+.++|+|+
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---------~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---------EILLEAKSWDEIGQSE 171 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHhcchH
Confidence 3556778888888999999999999999999999999999999999999999876 7899999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a 216 (591)
+|+..|++++..+|++++++..+|.++...|+.++|+..|++|+++..+....
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 99999999999999999999999999999999999999999999998765543
No 66
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.74 E-value=2.7e-09 Score=114.12 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=72.7
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch---
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--- 180 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~--- 180 (591)
..+..+|..++..|+|++|+..|.++++..|.+.. ++.+++.+|.+.|+|++|++.+.++++.+|.+.
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEG---------ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHH---------HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 44556666666666666666666666665444322 455666666666666666666666666555432
Q ss_pred --HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725 181 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 234 (591)
Q Consensus 181 --~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~ 234 (591)
..++.+|.++...|++++|+..|+++++++|++..++..++.+....++.+++.
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 244556666666666666666666666666666556666665555555444433
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=2.3e-09 Score=102.03 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=91.9
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
....+..+...|..++..|+|++|+..|.+++.+.++... ...+|.|+|.||...|++++|+..|++++.++|.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 4446788999999999999999999999999998665321 2347999999999999999999999999999999
Q ss_pred chHHHHHhccchh-------hhhhHH-------HHhhhcccccccCCCC
Q 007725 179 NVKALYRRGQAYK-------DIGRLE-------EAVSDLSNAHEVSPDD 213 (591)
Q Consensus 179 ~~~a~~~rg~al~-------~lg~~e-------eAl~~lekAl~l~P~~ 213 (591)
+...++++|.++. .+|+++ +|+..|++++..+|.+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999998 666666 5666666777788764
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=1.5e-09 Score=98.57 Aligned_cols=107 Identities=16% Similarity=0.055 Sum_probs=96.3
Q ss_pred HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (591)
Q Consensus 124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l 203 (591)
+.|.+++...|.+.. .++.++.+|+..|+|++|+..+++++.++|.++.+++++|.++...|++++|+.+|
T Consensus 4 ~~~~~~l~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE---------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCChhhHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999888754 67899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 204 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
++++.++|++...+..++.+....++.+.+...++.
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999988776665544443
No 69
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.8e-09 Score=105.83 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=119.8
Q ss_pred hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 78 ~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
....+++.+.....++..++.+|..++.|.-+|..|...|++..|...|.+|+++.|++++ .+.-++.+++
T Consensus 131 ~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------~~~g~aeaL~ 201 (287)
T COG4235 131 QPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------ILLGLAEALY 201 (287)
T ss_pred cCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH
Confidence 3345566777888888899999999999999999999999999999999999999999987 4555666555
Q ss_pred cc---ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 158 KT---KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 158 ~l---g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
.. ..-.++...++++|++||.++.+++.+|..++..|+|.+|+..++..+.+.|.+..-...+......
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 43 3467888999999999999999999999999999999999999999999999887766666554333
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=5.5e-09 Score=104.24 Aligned_cols=128 Identities=15% Similarity=0.039 Sum_probs=117.7
Q ss_pred ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725 96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (591)
Q Consensus 96 l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l 175 (591)
..+.++....+..+|..++..|+|.+|+..+.++..+.|++.. +|.-+|.||.+.|++++|...|.+++++
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------AWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------hhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 4456667778888999999999999999999999999999976 8999999999999999999999999999
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 176 dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
.|..+.++.|+|..|+-.|+++.|...+.++...-+.+..+..+|..+....++...
T Consensus 164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999999999999999998888899999999998887766544
No 71
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.68 E-value=5.6e-09 Score=111.62 Aligned_cols=141 Identities=14% Similarity=0.027 Sum_probs=79.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+...+.....+..++..+.+.|+|++|++.|.+++...|..... ....+|.+++.+|++.++++
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHHhCCCHH
Confidence 34455555555555455555566666666666666666666666666655443210 01123455666666666666
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC-ChHHHHHhHHHHHhh
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILM 228 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~-~~a~~~L~~a~~~l~ 228 (591)
+|+..|+++++++|++..+++.+|.+|...|++++|+..|++++..+|.+ ..++..+..+....+
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 66666666666666666666666666666666666666666666665554 233444444443333
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=3.9e-09 Score=105.39 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=103.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
....+..++.+|..++..|+|++|+..|.+++...|.++. ...+++++|.+|++.++|++|+..|+++++.+|+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 3456778999999999999999999999999999888753 2236789999999999999999999999999998
Q ss_pred chH---HHHHhccchhhh--------hhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 179 NVK---ALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 179 ~~~---a~~~rg~al~~l--------g~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
++. +++.+|.++... |++++|+..|++++..+|++..++..+..
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 877 799999999876 89999999999999999998766554443
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.64 E-value=6.8e-09 Score=121.68 Aligned_cols=133 Identities=12% Similarity=0.045 Sum_probs=117.0
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi 166 (591)
.+...+.......+..+..+..+|..+...|++.+|+.+|+++|.+.|.++. ++.+++.++...|++++|+
T Consensus 33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------YQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHH
Confidence 3445555555455666778999999999999999999999999999998876 6789999999999999999
Q ss_pred hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
..++++++.+|+++. ++.+|.++...|++++|+..|+++++++|++..++..++.+....+.
T Consensus 104 ~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 104 VKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999 99999999999999999999999999999999998888877654433
No 74
>PRK15331 chaperone protein SicA; Provisional
Probab=98.64 E-value=4.8e-09 Score=98.70 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=104.8
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
..+.-+.++..|-.++..|+|++|...|+-...+++.++. .+..+|.|+..+++|++|+..|..+..++++
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------YTMGLAAVCQLKKQFQKACDLYAVAFTLLKN 103 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 3445567888899999999999999999999999998876 7899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
++..+|+.|.||..+|+.++|+.+|+.++. .|.+..++..-......+.
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 5776666555555444443
No 75
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.60 E-value=2.6e-09 Score=85.10 Aligned_cols=64 Identities=28% Similarity=0.394 Sum_probs=59.2
Q ss_pred ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
.+|..|++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677889999999999999999999999999999999999999999999999999999999874
No 76
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.60 E-value=2.4e-08 Score=117.09 Aligned_cols=104 Identities=8% Similarity=-0.035 Sum_probs=70.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~ 183 (591)
..+..++..+...|++++|+.+|.+++...|.++. +++++|.++...|++++|++.|+++++++|++..++
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 44555666666667777777777777766666654 566677777777777777777777777777777777
Q ss_pred HHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725 184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 184 ~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a 216 (591)
+.+|.++..+++|++|+..++++++.+|+++.+
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777777777777777777777777766644
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=2.4e-08 Score=102.01 Aligned_cols=141 Identities=13% Similarity=0.018 Sum_probs=124.4
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++.+.+..-|...++..+..++++-..|.-||-.++.+-|+.+|++.|++--..|+ +++|+|.|.+-.++|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---------Lf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---------LFCNIGLCCLYAQQI 374 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH---------HHhhHHHHHHhhcch
Confidence 45666777888888888888999999999999999999999999999998777776 899999999999999
Q ss_pred hhhhhhcceeeecc--c-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 163 DECIKVGSEVLAYD--A-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 163 ~eAi~~~~~AL~ld--P-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
+-++..+.+|+..- | .-++.|||+|.+.+..|++.-|..+|+-|+..||++.+++.+|+.++.+-++..+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 99999999998763 3 4578999999999999999999999999999999999999999998766554433
No 78
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.50 E-value=1.2e-08 Score=95.60 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=88.3
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
..+.+|..++..|+|++|+..|+.+..+||.++.+|+++|.|+..+|+|++|+..|.+|+.++|+++..+..++.|...+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34557777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccchHH
Q 007725 228 MKEDGHHGPRGLLIE 242 (591)
Q Consensus 228 ~~~~~a~~~~~~~i~ 242 (591)
++...+...++.+|.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 998888888877773
No 79
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.47 E-value=3.2e-08 Score=89.13 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=90.6
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 179 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-- 179 (591)
....+--+|..+...|+.+.|++.|.++|.+.|..+. +|+||+.+|+-.|+.++|++++++|+++.-+.
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERAS---------AYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH---------hhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 3445666788899999999999999999999999876 89999999999999999999999999986543
Q ss_pred --hHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 180 --VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 180 --~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
-.+|..||..|..+|+.+.|..+|+.|.++-..
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 457899999999999999999999999887544
No 80
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.46 E-value=9.6e-08 Score=108.91 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=125.4
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
.+..|...|.+.++..|++..+-.-.|.++...|+|.+|+..|.++.+-...++. +|+|+|.||+.+|+|.
T Consensus 627 ~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d---------v~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED---------VWLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc---------eeeeHHHHHHHHHHHH
Confidence 4667888899999999999999999999999999999999999999886554443 8999999999999999
Q ss_pred hhhhhcceeeec--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 164 ECIKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 164 eAi~~~~~AL~l--dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
.||+.|+.+++- .-++...+..+|.++++.|.|.+|..++.+|+.+.|.++.+..+++.+.+++...-
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 999999999874 34678899999999999999999999999999999999999999999988886653
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.45 E-value=3.3e-08 Score=105.80 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
+++..|...|.+.+...+..+..+.++|.+++..|+|++|+..|.++|.++|.++. +|+++|.+|+.+|+|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~---------a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK---------AYLRKGTACMKLEEY 86 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHhCCH
Confidence 35666777777888888888999999999999999999999999999999998865 799999999999999
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhh
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~ 195 (591)
++|+.+|+++++++|++..++..++.|...+..
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998888776643
No 82
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.45 E-value=7.4e-09 Score=106.49 Aligned_cols=181 Identities=14% Similarity=0.058 Sum_probs=97.7
Q ss_pred CCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhh
Q 007725 51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAK 130 (591)
Q Consensus 51 ~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL 130 (591)
+.++...+++++...++.......+.+.-....++..+..-+....+. ......+......+...++++++...+.++.
T Consensus 59 ~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555544433222222211112223333344333333322 2345556666677888999999999998877
Q ss_pred hcc--ccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 131 KNL--QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 131 ~l~--p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
... +.+ ..+|.-+|.||.+.|++++|+++|++||+++|++..++..++.++...|+++++...++...+
T Consensus 138 ~~~~~~~~---------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 138 ELPAAPDS---------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp H-T---T----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hccCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 543 223 337888999999999999999999999999999999999999999999999998888888888
Q ss_pred cCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 209 VSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 209 l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
..|+++.++..++.+...+++.+.+...++..+
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 889999999999999999988776655555443
No 83
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.42 E-value=4.1e-08 Score=79.79 Aligned_cols=69 Identities=30% Similarity=0.497 Sum_probs=63.5
Q ss_pred ceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (591)
Q Consensus 153 a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~ 221 (591)
..+|++.++|++|++.+++++.++|+++..|+.+|.+|..+|+|++|+.+|+++++++|++..+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999887655443
No 84
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=6e-08 Score=103.99 Aligned_cols=123 Identities=18% Similarity=0.087 Sum_probs=78.5
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
.....++..+..++..|++++|+..+...+...|+++. ++.-++.++++.+++.+|++.+++++.++|+..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---------~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---------YLELAGDILLEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence 44445566666666666666666666666666666543 344466666666666666666666666666666
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
-..+++|.+|...|++.+|+..+++.+.-+|+|+..|..|..+...+++..+
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 6666666666666666666666666666666666666666666666655443
No 85
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.40 E-value=1.7e-08 Score=80.38 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=58.6
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
.+|..++..|+|++|+.+|+++++..|.++. +++.+|.||..+|+|++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE---------AWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5788999999999999999999999999876 899999999999999999999999999999875
No 86
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=1.8e-07 Score=86.89 Aligned_cols=100 Identities=22% Similarity=0.195 Sum_probs=84.6
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
-...+.+.+|..++..|+|++|+..|.+++...++.. +...+.++++.|++..|+|++|+..++. +.-.+-.+
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~ 118 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKA 118 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHH
Confidence 3466788899999999999999999999999764432 2344788899999999999999999966 44455677
Q ss_pred HHHHHhccchhhhhhHHHHhhhccccc
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
.++..+|.+|...|++++|+..|++|+
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 889999999999999999999999885
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.39 E-value=7e-08 Score=98.87 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=94.4
Q ss_pred HHHHHHhcccc-cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc---
Q 007725 103 AKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--- 178 (591)
Q Consensus 103 a~~lk~~Gn~~-~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--- 178 (591)
....+..+..+ ++.|+|++|+..|.+.+...|+.+. ...+++-+|.+|+..|+|++|+..|.++++..|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 35566677665 6789999999999999999888742 2337889999999999999999999999988776
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHH
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~ 217 (591)
.+.+++.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 588999999999999999999999999999999876543
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.38 E-value=7.3e-08 Score=77.15 Aligned_cols=66 Identities=27% Similarity=0.361 Sum_probs=60.7
Q ss_pred eccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
++.|+|++|++.|++++..+|++..+++.++.||...|++++|...+++++..+|+++.++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 467999999999999999999999999999999999999999999999999999998877776654
No 89
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=7.9e-08 Score=103.10 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=119.7
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
..+.+.++.-+...|+++..+--.+..+++.+++.+|++.|++++.+.|..+- +++|+|.+|++.|++.+|
T Consensus 323 d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------l~~~~a~all~~g~~~ea 393 (484)
T COG4783 323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---------LQLNLAQALLKGGKPQEA 393 (484)
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------HHHHHHHHHHhcCChHHH
Confidence 34445555555678889999999999999999999999999999999998754 789999999999999999
Q ss_pred hhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 166 i~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
|..+.+.+.-+|+++..|..++.+|..+|+..+|+..+...+.+.-+...++..+..++++.+
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998888888888887777664
No 90
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.37 E-value=5.4e-08 Score=99.93 Aligned_cols=92 Identities=18% Similarity=0.106 Sum_probs=86.0
Q ss_pred cccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 150 ~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
.-+|.-|+++|+|++||.+|.+++.++|.|+..|.||+.+|+++++|..|..+|+.|+.++-.+..++.+.+.+++.|+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccchH
Q 007725 230 EDGHHGPRGLLI 241 (591)
Q Consensus 230 ~~~a~~~~~~~i 241 (591)
..++.+.++.++
T Consensus 181 ~~EAKkD~E~vL 192 (536)
T KOG4648|consen 181 NMEAKKDCETVL 192 (536)
T ss_pred HHHHHHhHHHHH
Confidence 888777666655
No 91
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.6e-07 Score=95.74 Aligned_cols=134 Identities=28% Similarity=0.347 Sum_probs=117.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc----------cccceeeeeeccccceeeeccccchhhhhh
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRTLLLACSLNSMSCYLKTKQYDECIKV 168 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~ 168 (591)
.....+..++.|+..++.++|..|...|.+++.+....+. ..+..+...++.|++.|-++.+.|..|+..
T Consensus 218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~ 297 (372)
T KOG0546|consen 218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR 297 (372)
T ss_pred hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence 4455678889999999999999999999999987652111 124556777899999999999999999999
Q ss_pred cceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 169 ~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
+..+++.++...++||+++.++..+.++++|+.+++.+....|++..+...+..+...+.+++.
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888887765543
No 92
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.29 E-value=1.7e-07 Score=100.80 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=63.9
Q ss_pred cceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH---HHHhccchhhhhhHHHHhhhccccccc
Q 007725 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA---LYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 141 ~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a---~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
..+....+|+|+|.+|+++|+|++|+..|++||+++|+++.+ |||+|.||..+|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344456689999999999999999999999999999999965 999999999999999999999999997
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.27 E-value=3.4e-07 Score=96.71 Aligned_cols=161 Identities=11% Similarity=-0.048 Sum_probs=113.8
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHH---HHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIG---EKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 118 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~---~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~ 118 (591)
+.-.....+.++....++++....|.+..... ...... ..+....+...+.......+.....+..+|..+...|+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 33334445566666666665555565554322 110000 01111112222222334566667777888999999999
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc----hHHHHHhccchhhhh
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----VKALYRRGQAYKDIG 194 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~----~~a~~~rg~al~~lg 194 (591)
|++|+..|++++++.|+++. ++..++.+|+..|++++|+..+++++.+.|.. ...|+.++.++...|
T Consensus 130 ~~~A~~~~~~al~~~p~~~~---------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 130 YDRAEEAARRALELNPDDAW---------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcH---------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 99999999999999998864 78899999999999999999999999987743 245778999999999
Q ss_pred hHHHHhhhcccccccCCC
Q 007725 195 RLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 195 ~~eeAl~~lekAl~l~P~ 212 (591)
++++|+..|++++...|.
T Consensus 201 ~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 201 DYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CHHHHHHHHHHHhccccC
Confidence 999999999999877764
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.26 E-value=4.6e-07 Score=106.17 Aligned_cols=178 Identities=8% Similarity=-0.034 Sum_probs=134.0
Q ss_pred HhhhhhccCCCchhhhhhhhhcCCChhHHHHH-HHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccch
Q 007725 42 IATENMKNMRPEDLKCAAEQLTHTPPEEVAEI-GEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120 (591)
Q Consensus 42 ~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~-~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~ 120 (591)
+++...++.+.++....++++....|...... ..........+...+...+++.+...+.....+..+|..+...|+|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 36777777888887777787777777763221 11111111244556677677766555556677777788999999999
Q ss_pred hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh
Q 007725 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200 (591)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl 200 (591)
+|++.|+++++.+|.++. ++.-++.+|...+++++|++.+.+++.++|.+... ..++.++...+++.+|+
T Consensus 120 ~Aiely~kaL~~dP~n~~---------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL 189 (822)
T PRK14574 120 QALALWQSSLKKDPTNPD---------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHHHHHHHhhCCCCHH---------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence 999999999999999976 56677899999999999999999999999985554 44455555577777799
Q ss_pred hhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 201 SDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 201 ~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
..|+++++++|++.++...+-.+...++-
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999988877776655544
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.23 E-value=2e-07 Score=88.65 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=94.6
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc---chHHHHH
Q 007725 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYR 185 (591)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~---~~~a~~~ 185 (591)
..+.+|-...|..+...+.+.++....+. ...+|+++|.++...++|++|+..|++++.+.|+ .+.+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~ 77 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEK-------EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYN 77 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 34566777778888887766655444432 2558899999999999999999999999988776 3458999
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 186 rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+|.+|...|++++|+.+|++++.++|.+...+..++.+...+++
T Consensus 78 lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 78 IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999988888888885553
No 96
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.22 E-value=7.2e-07 Score=97.16 Aligned_cols=133 Identities=14% Similarity=-0.009 Sum_probs=108.3
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
+.+..+...+..+...|++++|++.+.++++..|++... . ...-+...++..++...+++.++++++.+|+++
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~------~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI------S-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc------h-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 467888889999999999999999999999998887530 0 011223333455788899999999999999999
Q ss_pred --HHHHHhccchhhhhhHHHHhhhcc--cccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 181 --KALYRRGQAYKDIGRLEEAVSDLS--NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 181 --~a~~~rg~al~~lg~~eeAl~~le--kAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
..+..+|.++++.|+|++|.++|+ ++++.+|++.. +..++.+..++++.+++...+++.+
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888899999999999999999999 68888898765 5589999999988777766666544
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=1.3e-07 Score=76.85 Aligned_cols=85 Identities=32% Similarity=0.385 Sum_probs=77.8
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+++++|.+|+..|++++|+..+++++++.|.+..+++.+|.++...+++++|+.+|++++.+.|.+..++..++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999988888888887777
Q ss_pred hhccC
Q 007725 228 MKEDG 232 (591)
Q Consensus 228 ~~~~~ 232 (591)
++...
T Consensus 82 ~~~~~ 86 (100)
T cd00189 82 GKYEE 86 (100)
T ss_pred HhHHH
Confidence 66444
No 98
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.21 E-value=2e-07 Score=103.12 Aligned_cols=149 Identities=18% Similarity=0.130 Sum_probs=122.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--- 175 (591)
.+..+..++.+|..|...++|.+|+..|.+||.+....- .+.++-.+.++.|++.+|.+.|+|++|..+|++|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 667777888899999999999999999999999765221 1223335668999999999999999999999999986
Q ss_pred -----cccchHHHHHhccchhhhhhHHHHhhhcccccccCC-----CC---ChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725 176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-----DD---GTIADVLRDAKEILMKEDGHHGPRGLLIE 242 (591)
Q Consensus 176 -----dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P-----~~---~~a~~~L~~a~~~l~~~~~a~~~~~~~i~ 242 (591)
.|.-+..+.+++.++...+++++|+.+|++++++.- ++ +.++.+|+.+....++++++..-++..|+
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 355677899999999999999999999999988742 23 46788999999999999988888887775
Q ss_pred HHHHhh
Q 007725 243 EITEEV 248 (591)
Q Consensus 243 e~~e~~ 248 (591)
...+..
T Consensus 396 ~~~~~~ 401 (508)
T KOG1840|consen 396 ILRELL 401 (508)
T ss_pred HHHhcc
Confidence 544433
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=2.2e-07 Score=103.40 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=112.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
+...+.+...+|+..+..++|.++.++++..++++|-... .|+++|.|+++++++..|+++|.+.+.++|+
T Consensus 481 n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 481 NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 3445567777888888899999999999999999887655 7999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~ 236 (591)
+..+|.|++.+|..+++-.+|...+++|++.+..+-.+|++.-.+...++..+.+...
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence 9999999999999999999999999999999988888888887776666655544333
No 100
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.20 E-value=4.2e-07 Score=97.90 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l 175 (591)
..++.+..+.++|..|++.|+|++|+.+|+++|+++|+++. ...+|+|+|.||..+|++++|+.++++||++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999999999999864 0135999999999999999999999999997
No 101
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.20 E-value=4.7e-07 Score=103.41 Aligned_cols=171 Identities=17% Similarity=0.112 Sum_probs=134.9
Q ss_pred CchhhhhhhhhcCCChhHHHHHHHH----hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHH
Q 007725 52 PEDLKCAAEQLTHTPPEEVAEIGEK----LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL 127 (591)
Q Consensus 52 pe~~~~a~e~l~~~~pee~~a~~~k----~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~ 127 (591)
++.+..+++......|..+.++... ......+-+..+...+.++...+...+..+..+++-+|-.|+|..+..++.
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 3344445555555666555544332 223344555566677777788888899999999999999999999999999
Q ss_pred Hhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-hHHHHHhccchhhhhhHHHHhhhcccc
Q 007725 128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 128 kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-~~a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
.++....+.+. ..-.|+++|.+|..+|+|++|..+|-+++..+|++ .-.++.+|+.|...|++++++.+|++.
T Consensus 295 ~ai~~t~~~~~------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 295 HAIKNTENKSI------KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHhhhhhHH------HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 99987544332 33458899999999999999999999999999988 888999999999999999999999999
Q ss_pred cccCCCCChHHHHHhHHHHHhh
Q 007725 207 HEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 207 l~l~P~~~~a~~~L~~a~~~l~ 228 (591)
++..|++.+....|+.+.....
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhh
Confidence 9999999999988888776663
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=1.8e-07 Score=74.79 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=59.0
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg 187 (591)
+++.|+|++|+..|++++...|.++. +++.++.||++.|++++|...+.+++..+|+++.++.-++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE---------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH---------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 35789999999999999999999876 7889999999999999999999999999999987776554
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.20 E-value=1.9e-06 Score=96.48 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=100.4
Q ss_pred hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc--------ccchhHHHHHHHhhhc--cccccccccceeee
Q 007725 77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE--------GRFSNALQKYLLAKKN--LQGIHSSEGRTLLL 146 (591)
Q Consensus 77 ~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~--------g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~ 146 (591)
+.....+++..+...++++++..|+.+.++-.++.+++.. .+...+.+...+++.+ ++.++.
T Consensus 350 ~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~-------- 421 (517)
T PRK10153 350 LNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR-------- 421 (517)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH--------
Confidence 3334566777888888888888888777777666555333 2344555666666554 333332
Q ss_pred eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
+|.-++..+...|++++|+..+++|+.++| ++.+|+.+|.++...|++++|++.|++|+.++|.++.
T Consensus 422 -~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 422 -IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 566677788888999999999999999999 5889999999999999999999999999999999874
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.19 E-value=4.2e-07 Score=101.71 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=96.1
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh--hc
Q 007725 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK--VG 169 (591)
Q Consensus 92 ~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~--~~ 169 (591)
+...-...+-.+..++..|..+..+|++.+|.+.|..|+.++|+++. +..-+|.||.+.|+..-|.. .+
T Consensus 673 L~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 673 LLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------SMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred HHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------HHHHHHHHHHHhCCcchHHHHHHH
Confidence 33333445666778888889999999999999999999999888854 67778899999998777777 88
Q ss_pred ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 170 ~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
..++++||.+.++||.+|.++..+|+.+.|.++|..|+++++.++.
T Consensus 744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999999999999999887763
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.19 E-value=2.5e-07 Score=75.13 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=62.9
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (591)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg 187 (591)
.+.|++.++|++|++++++++.++|.++. +|..+|.||.++|+|.+|+++|+++++++|++..+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE---------LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch---------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45688999999999999999999999876 8999999999999999999999999999999988776554
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.18 E-value=3.8e-07 Score=103.55 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.|..-+...++..+..+.+++.+|.+|-.+|+..+++..+..|-.++|.++. .|..++....++|.+.
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------LWKRLADLSEQLGNIN 224 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------HHHHHHHHHHhcccHH
Confidence 3444555555555556666666666666666666666666666666666666554 5666666666666666
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
.|+-+|++||..+|.+.+.++++...|.+.|++..|...|.+.+.++|
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 666666666666666666666666666666666666666666666666
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.16 E-value=2.6e-07 Score=97.68 Aligned_cols=144 Identities=10% Similarity=-0.032 Sum_probs=102.1
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeeccccceeeecccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
++++.+...+++.+...|.....+.. +..++..|++..+...+.+++.. .+.++. ...++.+++.++...|+
T Consensus 57 g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 57 GDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD------YWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC------cHHHHHHHHHHHHHcCC
Confidence 44556666677777777777766664 54555555544444444444432 122222 23356678899999999
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH----HHHHhHHHHHhhhccCC
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI----ADVLRDAKEILMKEDGH 233 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a----~~~L~~a~~~l~~~~~a 233 (591)
|++|+..|+++++++|+++.+++.+|.+|...|++++|+..+++++.+.|.+... +..+..+....++..++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999998864432 33455555555554443
No 108
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.14 E-value=3.7e-07 Score=84.27 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=92.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH-
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK- 181 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~- 181 (591)
+..++..|...++.|+|.+|++.|+......|..+. -..+.+.++.+|++.++|++|+..+++-|+++|.+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 457889999999999999999999999888776543 2447789999999999999999999999999998865
Q ss_pred --HHHHhccchhhhhh---------------HHHHhhhcccccccCCCCChH
Q 007725 182 --ALYRRGQAYKDIGR---------------LEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 182 --a~~~rg~al~~lg~---------------~eeAl~~lekAl~l~P~~~~a 216 (591)
++|.+|.+++.+.. ..+|+.+|++.+..-|+..-+
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 79999999999877 777888888888888876543
No 109
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.14 E-value=4.2e-07 Score=106.47 Aligned_cols=127 Identities=13% Similarity=0.040 Sum_probs=103.4
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
..+++..|...+++.++..+..+..+..+...+...|++++|+.++++++ .|.+.. ...+..+|.+|...|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-------~~~llalA~ly~~~g 116 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-------SRGLASAARAYRNEK 116 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-------HHHHHHHHHHHHHcC
Confidence 34456678888888888888875444466677777899999999999999 333321 123344477999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a 216 (591)
+|++|++.|+++++++|+++.+++-++.+|...++.++|+..+++++..+|.+...
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 99999999999999999999999999999999999999999999999999985543
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=4.8e-07 Score=91.74 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=101.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 179 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-- 179 (591)
.+..++..|..++..|+|++|++.|++.+...|..+. ...+.+++|.+|++.++|.+|+..+++.|+++|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 4566888999999999999999999999999887653 23356899999999999999999999999999876
Q ss_pred -hHHHHHhccchhhhh------------------hHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhc
Q 007725 180 -VKALYRRGQAYKDIG------------------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKE 230 (591)
Q Consensus 180 -~~a~~~rg~al~~lg------------------~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~~ 230 (591)
+.++|.+|.++..++ ...+|+..|++.+...|+.. ++...+..++.++.+.
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 457899998865443 24678999999999999864 5677777777777543
No 111
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=2.7e-07 Score=83.40 Aligned_cols=99 Identities=21% Similarity=0.085 Sum_probs=86.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc---ch
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NV 180 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~---~~ 180 (591)
..+++.+..+-..|+.++|+.+|++++......+. ...+++++|.+|+.+|++++|+..+++++...|+ +.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH
Confidence 46788889999999999999999999997544432 3458899999999999999999999999998788 88
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
...+.++.++..+|++++|+..+-.++.
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888899999999999999999987764
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.10 E-value=1.5e-06 Score=98.71 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=107.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+..+..++|.+|.+|++++|++.+.++|..+|..+. +|+.+|.||..+|+.++|..++..|-.++|.+..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE 208 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH
Confidence 4778999999999999999999999999999998876 8999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
.|.+++.....+|+++.|+-+|.+|++.+|.+-+.+.+...+.++.++..
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence 99999999999999999999999999999998665555555555444443
No 113
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.09 E-value=4.1e-07 Score=86.64 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=78.2
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc----------cchhhhhhcceeeeccccchHHHHHhcc
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----------QYDECIKVGSEVLAYDAKNVKALYRRGQ 188 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg----------~y~eAi~~~~~AL~ldP~~~~a~~~rg~ 188 (591)
|+.|.+.|+.....+|.+++ .++|-|.+++.+. -+++||..|++||.|+|+...++|++|.
T Consensus 7 FE~ark~aea~y~~nP~Dad---------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD---------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH---------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 67788999999999999876 5677777776653 4578999999999999999999999999
Q ss_pred chhhhhh-----------HHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 189 AYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 189 al~~lg~-----------~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
||..++. |++|..+|++|+.++|++...+.-|+.+.+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9988765 888999999999999999988888877644
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.08 E-value=6.1e-07 Score=88.40 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=96.6
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch-
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV- 180 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~- 180 (591)
.++.++..|..++..|+|.+|+..|++.+...|..+. ...+.+.++.+|++.++|.+|+..+++.++..|+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3567899999999999999999999999999887664 244678999999999999999999999999999764
Q ss_pred --HHHHHhccchhhhh-----------hHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhh
Q 007725 181 --KALYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMK 229 (591)
Q Consensus 181 --~a~~~rg~al~~lg-----------~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~ 229 (591)
.++|.+|.+++.+. ...+|+..|+..+..-|+.. ++...+..+...+.+
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~ 142 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHH
Confidence 58999999976654 34589999999999999975 455666677666644
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=2.3e-06 Score=85.67 Aligned_cols=156 Identities=12% Similarity=0.001 Sum_probs=125.4
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e 121 (591)
+....-..+.++...+..++....|.+........ ....-+++..+...+++.....+...+.|..+|..|-+.|++++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhH
Confidence 33333344455555556666655555543332221 11223567778899999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
|...|.+++++.+.+|. ++.|++..|+-.|+++.|..++.++...-+.+.....|++.+....|++++|..
T Consensus 153 Ar~ay~qAl~L~~~~p~---------~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 153 ARRAYRQALELAPNEPS---------IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHHHHhccCCch---------hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999999987 799999999999999999999999988888899999999999999999999987
Q ss_pred hccccc
Q 007725 202 DLSNAH 207 (591)
Q Consensus 202 ~lekAl 207 (591)
...+-+
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 766543
No 116
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.08 E-value=2.2e-06 Score=88.64 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=68.8
Q ss_pred eccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
+..|.+++||+.|+.+|+++|..+..|-.|+.++++++++..|+.+|..|++++|+...-+...+.++..++....+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 35577999999999999999999999999999999999999999999999999999887777777777777765543
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.3e-06 Score=95.08 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=94.3
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc-------ccchHH
Q 007725 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKA 182 (591)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld-------P~~~~a 182 (591)
|.+|.+.+++.-|...|..|+.+.|.+|- .+.-+|.+++..+.|.+|+..|..++..- +.+...
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dpl---------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPL---------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcch---------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 33444444555555555566666666654 67789999999999999999999998321 235567
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
+.|+|.++.+++++++|+..|+++|.+.|.+..++.-++.+.-.+++...+...+.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988776544433
No 118
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.07 E-value=6.2e-07 Score=85.75 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=79.6
Q ss_pred eeeccccceeeeccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 146 ~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
..+++++|.+|...|+|++|+.+|++++++.|+. +.+++++|.+|..+|++++|+..|++++.++|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4478999999999999999999999999987763 5799999999999999999999999999999999999888988
Q ss_pred HHHHhhhccCCCCC
Q 007725 223 AKEILMKEDGHHGP 236 (591)
Q Consensus 223 a~~~l~~~~~a~~~ 236 (591)
+...+++...+...
T Consensus 115 ~~~~~g~~~~a~~~ 128 (172)
T PRK02603 115 IYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHcCChHhHhhC
Confidence 88877665443333
No 119
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=6.6e-07 Score=91.72 Aligned_cols=132 Identities=14% Similarity=0.026 Sum_probs=115.6
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
+-+...|.+.+.--...++.+.++|-+++-.++|+-++.+|.+|+........ ...+|+|++.+..-.|++.-|
T Consensus 341 E~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~------aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ------AADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch------hhhhhhccceeEEeccchHHH
Confidence 34666777777777777889999999999999999999999999987654322 345899999999999999999
Q ss_pred hhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 166 i~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
.++|+-+|.-||++..+|.|+|..-.+.|+.++|...|..|-.+.|+-.+...+|+.+
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999999999999999999999999999999877776666543
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.3e-06 Score=85.24 Aligned_cols=121 Identities=15% Similarity=0.045 Sum_probs=93.6
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
+......+-.|..+-..|+|++|+++|...|+-+|.+.. .|...-.+...+|+-.+||+....-++.-+.+
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v---------~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D 153 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV---------IRKRKLAILKAQGKNLEAIKELNEYLDKFMND 153 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence 555566677788888899999999999999988777643 45544555556777778888888878878888
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
.++|+-++..|+..|+|++|.-+|+..+-+.|.++-...+|+++.+-++.
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888777777777776654
No 121
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=3.1e-06 Score=82.64 Aligned_cols=119 Identities=19% Similarity=0.062 Sum_probs=105.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
....+..++..|+.|=..|-+.-|.-.|.++|.+.|.-|. +++.+|..+...|+|+.|.+.|+.++++||.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------HHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 3445778999999999999999999999999999999887 7888999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+--++.|||.+++..|+|.-|..++.+-..-||+|+--.-.|-..+.+
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k 179 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK 179 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 999999999999999999999999999999999987433333333333
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.98 E-value=5.8e-06 Score=89.82 Aligned_cols=131 Identities=19% Similarity=0.044 Sum_probs=107.7
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP 177 (591)
..++.+..+...+..+...|++++|.....++++. +.++. +..-++.+ ..++++++++.+++.++.+|
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------l~~l~~~l--~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------LVLLIPRL--KTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------HHHHHhhc--cCCChHHHHHHHHHHHhhCC
Confidence 34556778888999999999999999999999994 44432 11122222 44899999999999999999
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+++..++.+|.++...++|++|.++|+++++++|++.. +..+..+.++.++.+++...|+..+
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754 5679999999888777766666544
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=5.6e-07 Score=79.00 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=79.8
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR 221 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~---~~a~~~L~ 221 (591)
.++++|.++.+.|+|++|++.|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 57789999999999999999999999999876 6799999999999999999999999999999986 46788888
Q ss_pred HHHHHhhhccCCCCCccchH
Q 007725 222 DAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 222 ~a~~~l~~~~~a~~~~~~~i 241 (591)
.+...+++...+...+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 88887766655554444433
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.4e-06 Score=91.66 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=103.6
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
++.|..-..+.++.++..+.++.-+|+.+...++..+|+-.|+.|+.+.|++-. +|-.+-.||+..|++.+
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---------~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---------IYRGLFHSYLAQKRFKE 386 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---------HHHHHHHHHHhhchHHH
Confidence 445566666677778889999999999999999999999999999999988754 56666666666666544
Q ss_pred ------------------------------------hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 165 ------------------------------------CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 165 ------------------------------------Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
|.++|+++|+++|.+..+...++..+...|++.+++..+++++.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 56666777777777777777777777777777777777777776
Q ss_pred cCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 209 VSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 209 l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
..|+. ..+..|+.+.......+++...|.+
T Consensus 467 ~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 467 IFPDV-NLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hcccc-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66553 3455555555544444444333333
No 125
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=2.4e-06 Score=86.41 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=97.2
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---h
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V 180 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~ 180 (591)
+.+++.+..+++.|+|.+|+..|..-|+..|+.+. ...+++=||.||+.+|+|++|...|..+++-.|++ +
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence 44889999999999999999999999999888764 34578889999999999999999999999987765 5
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~ 218 (591)
++++.+|.++.++|+.++|...|++.++.-|+...+..
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 67999999999999999999999999999998776544
No 126
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=3.8e-06 Score=90.65 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=99.7
Q ss_pred ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc---ccchhhhhhccee
Q 007725 96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT---KQYDECIKVGSEV 172 (591)
Q Consensus 96 l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l---g~y~eAi~~~~~A 172 (591)
...-+..++..+..||..|..+.+..||..|.+++...|.. ..+|.|++.+|++. ++.-.|+.+|..|
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------~~~l~nraa~lmkRkW~~d~~~AlrDch~A 437 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------IYLLENRAAALMKRKWRGDSYLALRDCHVA 437 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------hHHHHhHHHHHHhhhccccHHHHHHhHHhh
Confidence 34567788999999999999999999999999999997775 44899999999875 4677899999999
Q ss_pred eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007725 173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (591)
Q Consensus 173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~ 218 (591)
|++||...++||+++.++..++++.+|+.+...+....|.+.....
T Consensus 438 lrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 438 LRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQN 483 (758)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhh
Confidence 9999999999999999999999999999999888888886554333
No 127
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.90 E-value=3.4e-07 Score=75.49 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=56.5
Q ss_pred eeeccccceeeeccccchhhhhhcceeeecc-------ccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 146 ~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld-------P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
..+|.|+|.+|+.+|+|++|+..|++++++. |..+.+++++|.+|..+|++++|+.++++|+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4478999999999999999999999999762 345889999999999999999999999999865
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.89 E-value=3.2e-06 Score=98.74 Aligned_cols=146 Identities=10% Similarity=0.020 Sum_probs=111.6
Q ss_pred hcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007725 62 LTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE 140 (591)
Q Consensus 62 l~~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e 140 (591)
+.+.+|....++...+... ...+++.+..-....+.+.++....++-.|-.++..+++.++... .++...+.+..+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 4567777777777665555 455666777777788888888888888888888888888888777 7777766654332
Q ss_pred cceeee----------eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 141 GRTLLL----------ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 141 ~~~l~~----------~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
.-+.+. .+++.+|.||.++|++++|...|+++|++||+|+.++.++|..|... ++++|+..+.+|+...
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 222222 46677888888888888888888888888888888888888888888 8888888888887764
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.89 E-value=2.3e-06 Score=99.89 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=107.8
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc---------ccceeeeeeccccceeeeccccchhhhh
Q 007725 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------EGRTLLLACSLNSMSCYLKTKQYDECIK 167 (591)
Q Consensus 97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~---------e~~~l~~~~~~Nla~~y~~lg~y~eAi~ 167 (591)
.|.+....++..+...+...+++++|++.+..++...|..... ......-.+.+++........++ .+++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence 4778888999999999999999999999999999999886541 11112222334556666666677 6677
Q ss_pred hcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 168 ~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
++...+...+.+-.+++.+|.||-.+|++++|...|+++++++|+|+.+..+++...... +.+++
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 776666668999999999999999999999999999999999999999999988876665 54443
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=1.7e-05 Score=79.17 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=118.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
.+..|...|..-+..++...-.++.+-..+..+|+-.+||+...+.++..+.|++ +|.-++..|+..|+|+
T Consensus 101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---------AW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---------AWHELAEIYLSEGDFE 171 (289)
T ss_pred chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHhHhHHH
Confidence 3445666677777777777777777777788889999999999999999999987 8999999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhh---hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg---~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
.|+-+|++.+-+.|.++-++-++|.+++.+| +++-|.++|+++++++|.+..++..+-.+-..+.+
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765 56779999999999999888888888777777653
No 131
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.85 E-value=1.1e-05 Score=89.24 Aligned_cols=146 Identities=16% Similarity=0.067 Sum_probs=124.0
Q ss_pred hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 78 ~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
......++..-.+-.++.++..++..+.+--+|-.+...|+-++|..+...++..++..+- ||.-+|.+++
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v---------CwHv~gl~~R 86 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV---------CWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch---------hHHHHHHHHh
Confidence 3333445566666667777778888899999999999999999999999999998777654 9999999999
Q ss_pred ccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
..++|++||++|+.||.++|+|...|+-++.....+++|+-....-.+.+++.|.+-.-|..+..+...++.+..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988777777777766665543
No 132
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.85 E-value=5.8e-07 Score=74.05 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=61.0
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld 176 (591)
+..+..+.++|.+++..|+|++|+.+|++++.+....+. .....+.++.|+|.||..+|++++|++.+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456778999999999999999999999999988432221 122346789999999999999999999999998753
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.83 E-value=1.1e-05 Score=89.19 Aligned_cols=119 Identities=14% Similarity=0.053 Sum_probs=108.4
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.++......|..++|...+......|.-.|.+++ .+.-.|..+..+|+-++|...+..+++.|+.+..+|+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwH 79 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------hHHhccchhhcccchHHHHHHHHHHhccCcccchhHH
Confidence 4566666788999999999999999998888876 4555788888999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
.+|..+..-++|++|+++|+.|+.++|+|..++.-|..++.+++++++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999988775
No 134
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=3.4e-06 Score=86.57 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=106.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
...++..+-+.|....+|++||+.-++...+.+..-. -.++.+|.-++..+....+++.|+..+.+|+..||+++.
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR 215 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR 215 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence 4457777788899999999999998888887665432 224557777888888888999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCC-ChHHHHHhHHHHHhhhcc
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKED 231 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~-~~a~~~L~~a~~~l~~~~ 231 (591)
+-.-+|.++...|+|+.|++.|+++++.||++ +++...|.+|...+++..
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999987 578888888888887654
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=97.82 E-value=9.9e-06 Score=87.55 Aligned_cols=129 Identities=12% Similarity=-0.055 Sum_probs=110.1
Q ss_pred hhcCChHHHHHHHHhhhhcc---cccchHHHHHHHhcccccc---------cccchhHHHHHHHhhhcccccccccccee
Q 007725 77 LANASPEEIATMRARIDAQM---NYEFNAAKMLKKQGNELYS---------EGRFSNALQKYLLAKKNLQGIHSSEGRTL 144 (591)
Q Consensus 77 ~~~~~~~e~~~a~~~~~~~l---~~~~~~a~~lk~~Gn~~~~---------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l 144 (591)
+....++.++.|..-+.+.+ ...+..+.++.-++.+++. ...-.+|+++-++|+++++.|+.
T Consensus 266 ~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------ 339 (458)
T PRK11906 266 LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------ 339 (458)
T ss_pred hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH------
Confidence 55556777788888888887 7777777777666665543 34557889999999999999976
Q ss_pred eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 145 ~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
++..+|.++.-.++++.|+..+++|+.++|+.+.+||.+|.++...|+.++|++.+++|++++|...
T Consensus 340 ---a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 340 ---ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred ---HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 7788888888889999999999999999999999999999999999999999999999999999754
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=1.8e-06 Score=80.19 Aligned_cols=129 Identities=17% Similarity=0.084 Sum_probs=100.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 179 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--- 179 (591)
+...+......+..+++..+...|.+.+.-.|..+. -..+++.++.+++..|+|++|+..|+.++...|+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY------AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 334455555556788899888889999888777632 23467789999999999999999999999977654
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
..+.++++.+++..|+|++|+..++.. .-.+-.+.++..++.+....++..++...|+
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 568999999999999999999999773 3334456788888999888887776655554
No 137
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=4e-06 Score=80.92 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=78.1
Q ss_pred ceeeeccccchhhhhhcceeeeccccc-----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 153 MSCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 153 a~~y~~lg~y~eAi~~~~~AL~ldP~~-----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
|.-+++.|+|++|...|.+||.+.|.. ...|.|||.|+.+++.|+.|+.++.+|++|+|.+..++.+...++.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 444678899999999999999999864 458999999999999999999999999999999999999989998888
Q ss_pred hhccCCCCCccchH
Q 007725 228 MKEDGHHGPRGLLI 241 (591)
Q Consensus 228 ~~~~~a~~~~~~~i 241 (591)
..+..+..-|.+++
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777776544
No 138
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.79 E-value=4.5e-06 Score=92.48 Aligned_cols=142 Identities=19% Similarity=0.143 Sum_probs=109.6
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--- 175 (591)
.++.+..+.+++..+...++|++|+.+|++++++..+.+. +.+......|.|+|.+|+.+|+|.+|.+.|.+||.+
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g-~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG-EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 4556677777888888888888888888888876552221 222235568899999999999999999999999976
Q ss_pred -----cccchHHHHHhccchhhhhhHHHHhhhcccccccC----CCC---ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS----PDD---GTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 176 -----dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~----P~~---~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++.....+.++|.+|.+.+++.+|...|.+++.+- |++ ...+.+|+.+...+++++.+.+-.+.++
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35567889999999999999999988888887663 333 4578899999999998877665555444
No 139
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=3e-05 Score=82.38 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=74.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc----------ccc---------eeeeeeccc------cc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----------EGR---------TLLLACSLN------SM 153 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~----------e~~---------~l~~~~~~N------la 153 (591)
....++.+..+++.|-...+...||++|.++..+.|.+|.. |.. +...+.-.| ++
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 34456666677777777777777777777777777777640 000 000000111 34
Q ss_pred eeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 154 ~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
..|+..+=++++|.++++|--+.|+..+-....+.|+.+.|+|..|++.|+..+..-|.+.+.+..|-++
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4555555566666666666666666666666666666666666666666666666666666555555444
No 140
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.1e-05 Score=85.28 Aligned_cols=99 Identities=11% Similarity=-0.037 Sum_probs=83.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
...+.|++.++.+.++|.+|+.++.++|.+.|++.. +++.+|.||+.+++|+.|+.+|.+|++++|.|-.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K---------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK---------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 456888999999999999999999999999999865 89999999999999999999999999999999888
Q ss_pred HHHhccchhhhhhHHHH-hhhcccccccC
Q 007725 183 LYRRGQAYKDIGRLEEA-VSDLSNAHEVS 210 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeA-l~~lekAl~l~ 210 (591)
..-+..+..+..++.+. .+.|.+.+..-
T Consensus 328 ~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 328 RAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77777777666665554 55555555443
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.72 E-value=4.7e-06 Score=93.52 Aligned_cols=128 Identities=16% Similarity=-0.012 Sum_probs=111.4
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.|.-.+..+.+.+.-++|..|..++-.++|..+. .|+-+|.++...|++.+|.+.|..|+.+||+++....
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~---------~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~ 722 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS---------VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH---------HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH
Confidence 3444555666777778888899999998877654 7889999999999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhh--hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 185 RRGQAYKDIGRLEEAVS--DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~--~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
.+|.+|.+.|+-.-|.. .+..++++||.+.++|..|+.+.+++|+.+.+...+...+
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999999999888887 9999999999999999999999999998877666655544
No 142
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.71 E-value=1.8e-05 Score=90.89 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=131.6
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------------c------
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------------E------ 140 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------------e------ 140 (591)
...+.+-+...+.++++..+..+.++-.+|..|..--+...|-.||.+|.++++.+... +
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 33446667777888888888888899999998888888889999999999998876541 0
Q ss_pred -------cceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 141 -------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 141 -------~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
........|..||..|++-+++..||..++.|++.+|.+..+|.-+|.+|.+.|+|..|++.|.+|..++|.+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 0011223466799999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 214 GTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 214 ~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
.-+.......+...++++++....+..+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777777777777776655555544
No 143
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.7e-05 Score=83.63 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=109.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc----------c---------------cceeeeeeccccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----------E---------------GRTLLLACSLNSM 153 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~----------e---------------~~~l~~~~~~Nla 153 (591)
-+.+...+-.+|.+++..|++.+|+-.|+++.-++|..... + ..+-...-|+--+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 45667788899999999999999999999999998865320 0 0001111233344
Q ss_pred eeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 154 ~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
..++..++|+.|+.+.+++|.++|++..+|.-.|.++..++++++|+-.|+.|..+.|-+-+++..|-++.-..++.++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 5566789999999999999999999999999999999999999999999999999999988888888887666665544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=6.5e-06 Score=69.05 Aligned_cols=74 Identities=27% Similarity=0.351 Sum_probs=64.8
Q ss_pred cccchhhhhhcceeeecccc--chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 159 TKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
.++|+.|+..|+++++.+|. +...++.+|.||+..|+|++|+..+++ +.++|.+..++..++.+...+++++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57899999999999999995 577888899999999999999999999 889998888888899999998876554
No 145
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.65 E-value=1e-05 Score=90.26 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=69.9
Q ss_pred eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (591)
Q Consensus 147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~ 224 (591)
.+++.++++|...|+|++|++++++||...|..++.|+.+|.+|.+.|++.+|..+++.|-.+|+.|.-+........
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 366889999999999999999999999999999999999999999999999999999999999998876555544433
No 146
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.64 E-value=1.4e-05 Score=89.37 Aligned_cols=122 Identities=9% Similarity=0.071 Sum_probs=115.1
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
..+++.+...++.++..++-....|+..|.++.+.+++..|+.+|.+++.+.|++.. .|+|++.+|.+.++
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e---------aWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE---------AWNNLSTAYIRLKK 568 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh---------hhhhhhHHHHHHhh
Confidence 457889999999999999999999999999999999999999999999999999866 89999999999999
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
-.+|...+.+|++.+-.+++.|-|.-.+....|+|++|+..|.+.+.+.-+
T Consensus 569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999998877544
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=1.5e-05 Score=89.32 Aligned_cols=130 Identities=12% Similarity=-0.047 Sum_probs=98.7
Q ss_pred HHHHHHHhccccccc---ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc--------ccchhhhhhcc
Q 007725 102 AAKMLKKQGNELYSE---GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGS 170 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~---g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l--------g~y~eAi~~~~ 170 (591)
.+..++-.|..++.+ +.+..|+.+|++|++++|++.. +|.-++.||... .+...+.+...
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---------AQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344556667666544 4488999999999999999854 444555555433 23445566666
Q ss_pred eeeec--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 171 EVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 171 ~AL~l--dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+++.+ +|..+.+|..+|..+...|++++|...|++|+.++| +..++..++.+....++.+++...+...+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76664 788889999999999999999999999999999999 47889999999999888777666655544
No 148
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.57 E-value=1.7e-05 Score=55.28 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.8
Q ss_pred hcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 168 ~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999974
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.57 E-value=6.3e-06 Score=84.54 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=80.8
Q ss_pred eccccceee-eccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHH
Q 007725 148 CSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVL 220 (591)
Q Consensus 148 ~~~Nla~~y-~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~---~~a~~~L 220 (591)
.+++.+.++ ++.|+|++|+..|+..|+..|++ +.++|.+|.+|+..|+|++|+..|++++...|++ ++++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 456666665 56799999999999999999988 5899999999999999999999999999998886 4677777
Q ss_pred hHHHHHhhhccCCCCCccchHHH
Q 007725 221 RDAKEILMKEDGHHGPRGLLIEE 243 (591)
Q Consensus 221 ~~a~~~l~~~~~a~~~~~~~i~e 243 (591)
+.+...+++..++...++.++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888777777777766644
No 150
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.55 E-value=3.6e-05 Score=83.88 Aligned_cols=125 Identities=13% Similarity=0.050 Sum_probs=102.7
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
..++++.+.+.+.+..+..+.....+.-.|..+..+|+++.|..+|.++.+..|.... .+...++..++..|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l--------~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI--------LVEIARTRILLAQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch--------HHHHHHHHHHHHCC
Confidence 3345666666666666666666677778889999999999999999999988766531 12334588888999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
+|+.|+..+++.++..|+++.+++.++.+|...|+|++|+..+++.++....+
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999998775443
No 151
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.00018 Score=74.28 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=104.5
Q ss_pred hHHHHHHHHhhhhc-----ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725 82 PEEIATMRARIDAQ-----MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156 (591)
Q Consensus 82 ~~e~~~a~~~~~~~-----l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y 156 (591)
..+++.|.+-..+- ..+....+..+..++..+....+++.|+..+.+|++-+|.+.. +-.-+|.++
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---------Asi~lG~v~ 224 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---------ASIILGRVE 224 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---------hhhhhhHHH
Confidence 34555555433322 3467888999999999999999999999999999999988854 566799999
Q ss_pred eccccchhhhhhcceeeeccccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~-~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
...|+|..|++.++.+++.||++ +...-.+-.||..+|+.++.+..+.++.+..+...
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 99999999999999999999987 45677789999999999999999999998887644
No 152
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=2.8e-05 Score=82.05 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=84.5
Q ss_pred cchHHHHHHHhccccccccc--------------------chhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725 99 EFNAAKMLKKQGNELYSEGR--------------------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~--------------------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~ 158 (591)
..-...+++++||+|..+|+ +..|+++|.+-|++.....+ .-....||-|+|..|+.
T Consensus 131 rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD---r~aqGRa~GnLGNTyYl 207 (639)
T KOG1130|consen 131 RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD---RLAQGRAYGNLGNTYYL 207 (639)
T ss_pred HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh---HHhhcchhcccCceeee
Confidence 33456889999999987775 35567777777776544322 12235589999999999
Q ss_pred cccchhhhhhcceeeecccc------chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 159 TKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
+|+|+.||.+-..-|+|.-. -..+|.|+|.||.-+|+++.|+++|++.+.+
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 99999999988877777543 3568999999999999999999999997765
No 153
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.2e-05 Score=76.61 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=70.0
Q ss_pred cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 152 la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
-|.+|+.-++|..||..|.+||.++|..+.+|-+|+.||+++++|+.+..++++|++++|+....+..|+.+.-...
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 46677788999999999999999999999999999999999999999999999999999998888888877755543
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.45 E-value=5.1e-05 Score=81.99 Aligned_cols=125 Identities=10% Similarity=0.073 Sum_probs=91.3
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
++.+.+-+++-....++ ...-++..++..++..+|++...++|...|.+.. ++.-.+.++++.++|+.
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---------LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---------LLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHH
Confidence 33444444443333433 3334566666777788899999999988777754 56667888889999999
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~ 221 (591)
|+..+++++++.|++.+.|+.++.+|..+|+|++|+..+..+--+.+++...+..+.
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~~ 309 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLKRPV 309 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhhcCC
Confidence 999999999999999999999999999999999999888877655444444444333
No 155
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.44 E-value=3e-05 Score=84.26 Aligned_cols=196 Identities=10% Similarity=0.004 Sum_probs=137.8
Q ss_pred hhhh-hccCCCchhhhhhhhhcCCChhHH-HH-HHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc
Q 007725 43 ATEN-MKNMRPEDLKCAAEQLTHTPPEEV-AE-IGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF 119 (591)
Q Consensus 43 A~e~-m~~~~pe~~~~a~e~l~~~~pee~-~a-~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y 119 (591)
+++. .+..+++......++.....|+.. .. ...--......+++.+...++...+..|+....++.++..|.+.|+|
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 4444 667778888888877777766653 22 11111222334566788888888888999999999999999999999
Q ss_pred hhHHHHHHHhhhcccccccc---------------------------------ccceeeeeeccccceeeeccccchhhh
Q 007725 120 SNALQKYLLAKKNLQGIHSS---------------------------------EGRTLLLACSLNSMSCYLKTKQYDECI 166 (591)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~---------------------------------e~~~l~~~~~~Nla~~y~~lg~y~eAi 166 (591)
++|++.|.+..+....++.. ........++..++..+...|++++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99997777666543322110 000012224556688888999999999
Q ss_pred hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+.++++++. |.+......++.+ ..++++++++.+++.++.+|+++..+..++.+....++..++...++..+
T Consensus 284 ~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 284 QIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999984 4455544444444 33889999999999999999999999999998888877777666666554
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.41 E-value=3.9e-05 Score=52.85 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=29.2
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
+++|+++|.+|..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4688999999999999999999999999999874
No 157
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.40 E-value=0.00012 Score=81.26 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=110.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
++.++..-+..++.+++..-+.++..-...+....|+.|..+|.++....+.. .+|+.-+...+.++..+
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----------Rv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----------RVWMKSANLERYLDNVE 668 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----------hhhHHHhHHHHHhhhHH
Confidence 34456666666677777777777777777777777888888888777755543 25777777778889999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+|+++|+++|+.-|++.+.|..+|+++...++.+.|.+.|...++..|+....|-.|..++++.++
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999899988888777654
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=5e-05 Score=77.84 Aligned_cols=107 Identities=11% Similarity=-0.029 Sum_probs=95.2
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh---
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG--- 194 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg--- 194 (591)
..+.-+...+..|..+|++.+ -|.-+|.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~e---------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAE---------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ 207 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCch---------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc
Confidence 356677788999999999976 68899999999999999999999999999999999999999987553
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
...++...|++++.+||.|..+...|+...+.-++++.+
T Consensus 208 ~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A 246 (287)
T COG4235 208 MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA 246 (287)
T ss_pred ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 367899999999999999999999999998888777654
No 159
>PRK11906 transcriptional regulator; Provisional
Probab=97.34 E-value=2.8e-05 Score=84.11 Aligned_cols=117 Identities=11% Similarity=-0.052 Sum_probs=94.0
Q ss_pred HHhcccccccc---cchhHHHHHHHhh---hccccccccccceeeeeeccccceeeecc---------ccchhhhhhcce
Q 007725 107 KKQGNELYSEG---RFSNALQKYLLAK---KNLQGIHSSEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGSE 171 (591)
Q Consensus 107 k~~Gn~~~~~g---~y~eAi~~Y~kAL---~l~p~~~~~e~~~l~~~~~~Nla~~y~~l---------g~y~eAi~~~~~ 171 (591)
+-.|...+.++ ....|+.+|.+|+ .++|.... +|.-++.||... .+-.+|++..++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~---------a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE---------CYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH---------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 44454443332 4577899999999 77766644 777788887654 244678899999
Q ss_pred eeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 172 AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
|+++||.++.+++.+|.++...++++.|+..|++|+.++|+.+.++...+.+...-++...
T Consensus 330 Aveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 330 VSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999988887666655443
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0001 Score=69.70 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=81.4
Q ss_pred hcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007725 62 LTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE 140 (591)
Q Consensus 62 l~~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e 140 (591)
+.+.+.++++..+..+-.. ..+.+..|..-++--..+.+-..+++..+|.++...++|++|+..|..+..+.+++|.
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~-- 106 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR-- 106 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--
Confidence 3445555555544432211 2233445555555555566667889999999999999999999999999999999987
Q ss_pred cceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 141 ~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
.++..|.||+.+|+...|+..|..|+. .|.+
T Consensus 107 -------p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 107 -------PVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred -------ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 588999999999999999999999987 3443
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=4.4e-05 Score=79.03 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=87.8
Q ss_pred chHHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-
Q 007725 100 FNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA- 177 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP- 177 (591)
...+..+..+|..|... |++++|+++|.+|+++...+.. ......++.+++.++.++++|++|++.|++++...-
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 34578899999999999 9999999999999998665432 112344788999999999999999999999876421
Q ss_pred -----cch-HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 178 -----KNV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 178 -----~~~-~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
.++ +.++..+.|++..|++..|...|++...++|....
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 123 35678888999999999999999999999997654
No 162
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.29 E-value=8.1e-05 Score=54.76 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=34.5
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
.+++.+|.+|..+|++++|++.|+++++.+|++..++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888888888888888888888888888888888877764
No 163
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.27 E-value=0.0001 Score=76.83 Aligned_cols=109 Identities=18% Similarity=0.078 Sum_probs=56.7
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec--c--ccchhhhhhcceeeeccccchHHHHH
Q 007725 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--T--KQYDECIKVGSEVLAYDAKNVKALYR 185 (591)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~--l--g~y~eAi~~~~~AL~ldP~~~~a~~~ 185 (591)
-.++++.+|++.|.+.++...+.+.+. ...+++.++.. . .+|.+|...|++.....+.++..+..
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng 206 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDS-----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNG 206 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCH-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 335556666666666666655554333 22333332222 2 24666666666655555555666666
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 186 rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
++.|+..+|+|++|...++.|+..+|+++++..++..+...+++
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 66666666666666666666666666666655555555444443
No 164
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0002 Score=78.68 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=106.0
Q ss_pred HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725 40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 118 (591)
Q Consensus 40 ~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~ 118 (591)
+-..-...++...+++.+.+.++....|++..+.+.++-++ +.+.|+.+.+....-. .........+.++.++|+.++
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~-~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG-ALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-hhhhcchhhHHHHHHHHHccc
Confidence 33344445566667777777778777788888888885444 4556666663222211 111111222678888899999
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-----------------------
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----------------------- 175 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l----------------------- 175 (591)
.++|+.+|. .++ +.++. +..-++++++++++|++|+..|+..++-
T Consensus 95 ~Dealk~~~-~~~--~~~~~---------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 95 LDEALKTLK-GLD--RLDDK---------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHHHh-ccc--ccchH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 999999988 222 22211 3445788888999999999888877432
Q ss_pred -------cc-cchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 176 -------DA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 176 -------dP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
.| +....+||.+.++...|+|.+|++.+++|+.
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 12 2566899999999999999999999999933
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=4.1e-05 Score=69.25 Aligned_cols=86 Identities=21% Similarity=0.177 Sum_probs=73.2
Q ss_pred eccccceeeeccccchhhhhhcceeeeccc---cchHHHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLR 221 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP---~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~---~~~a~~~L~ 221 (591)
+.++++.+|-.+|+.++|+..|+++|...+ .-..+++.+|.+|..+|++++|+..+++++...|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 567899999999999999999999998754 34779999999999999999999999999999888 666777777
Q ss_pred HHHHHhhhccCC
Q 007725 222 DAKEILMKEDGH 233 (591)
Q Consensus 222 ~a~~~l~~~~~a 233 (591)
.+...+++.+++
T Consensus 83 l~L~~~gr~~eA 94 (120)
T PF12688_consen 83 LALYNLGRPKEA 94 (120)
T ss_pred HHHHHCCCHHHH
Confidence 777777665543
No 166
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.18 E-value=0.00014 Score=49.81 Aligned_cols=34 Identities=38% Similarity=0.650 Sum_probs=30.2
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
+++|+.+|.++..+|++++|+.+|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.14 E-value=5.4e-05 Score=79.96 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=85.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc----
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA---- 177 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP---- 177 (591)
.-.++-++||.||-.|+|+.||..-+.-|.+.....+ +.....+|.|+|.||.-+|+|+.|+++|.+++.+.-
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 4467788999999999999999987777776554332 111234799999999999999999999998865431
Q ss_pred --cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 178 --KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 178 --~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
-.+...|-+|.+|.-+++++.||.++.+-+.+.-
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466789999999999999999999998777654
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.09 E-value=0.00028 Score=81.37 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=105.4
Q ss_pred hhhcccccchHHHHHHHhcccc-----cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh
Q 007725 92 IDAQMNYEFNAAKMLKKQGNEL-----YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (591)
Q Consensus 92 ~~~~l~~~~~~a~~lk~~Gn~~-----~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi 166 (591)
+.+.+....+.+..+...++.+ +-+.+-..|+..|-+++++++.. .++|..+|..|+.--+...|.
T Consensus 442 ~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~---------apaf~~LG~iYrd~~Dm~RA~ 512 (1238)
T KOG1127|consen 442 LPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSL---------APAFAFLGQIYRDSDDMKRAK 512 (1238)
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccch---------hHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443 23445788999999999997775 458899999999999999999
Q ss_pred hhcceeeeccccchH------------------------------------HHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 167 KVGSEVLAYDAKNVK------------------------------------ALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 167 ~~~~~AL~ldP~~~~------------------------------------a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
.+|++|.++|+.++. .|.+||..|.+-+++..|+.+|+.|++.+
T Consensus 513 kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d 592 (1238)
T KOG1127|consen 513 KCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD 592 (1238)
T ss_pred HHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC
Confidence 999999999986644 35568999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHhhhccCCCC
Q 007725 211 PDDGTIADVLRDAKEILMKEDGHHG 235 (591)
Q Consensus 211 P~~~~a~~~L~~a~~~l~~~~~a~~ 235 (591)
|++...|..|+++.-.-+.+..+..
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHH
Confidence 9999999999999888777665433
No 169
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.04 E-value=0.0001 Score=70.48 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=65.9
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccc----------cchhHHHHHHHhhhccccccccccceeeeeeccccce
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEG----------RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS 154 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g----------~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~ 154 (591)
++.+.+.+......+|..++.|.+-|..+.... -+++|+..|++||.++|+... ++.|+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---------Alw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---------ALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---------HHHHHHH
Confidence 556677777777778888998888888775443 457899999999999999876 7899999
Q ss_pred eeecccc-----------chhhhhhcceeeeccccchH
Q 007725 155 CYLKTKQ-----------YDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 155 ~y~~lg~-----------y~eAi~~~~~AL~ldP~~~~ 181 (591)
+|..++. |++|..+|++|..++|+|..
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9987653 78888888888888998764
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.01 E-value=0.00046 Score=71.89 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=96.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
.++.|.+.+....+...+..-.....+.+.+..| +|.+|.-.|++..+..+..+. .++.++.|++.+|+
T Consensus 146 R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~---------~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 146 RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK---------LLNGLAVCHLQLGH 216 (290)
T ss_dssp -HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH---------HHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH---------HHHHHHHHHHHhCC
Confidence 3445666666666666666666666665655555 699999999998776554433 67789999999999
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhhhhH-HHHhhhcccccccCCCCChHHH
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-EEAVSDLSNAHEVSPDDGTIAD 218 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~-eeAl~~lekAl~l~P~~~~a~~ 218 (591)
|++|.+.+.+++..+|+++.++.|+..+...+|+. +.+.+++.+....+|+++-+..
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999999999998 6677788888888999875543
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.0014 Score=66.57 Aligned_cols=124 Identities=9% Similarity=-0.049 Sum_probs=92.6
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc------------------c
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK------------------Q 161 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg------------------~ 161 (591)
+-...+.+.+|..+++.++|.+|+..|++.++..|+++. ...+++.+|.|+..++ .
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~ 139 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQH 139 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHH
Confidence 334556789999999999999999999999999999986 3456777887764443 1
Q ss_pred chhhhhhcceeeeccccchH---H--------------HHHhccchhhhhhHHHHhhhcccccccCCCCCh---HHHHHh
Q 007725 162 YDECIKVGSEVLAYDAKNVK---A--------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT---IADVLR 221 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~---a--------------~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~---a~~~L~ 221 (591)
-.+|+..+++.|+.-|+..- + -+..|.-|.+.|+|..|+.-++..++.-|+.+. +...+.
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~ 219 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME 219 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 35788999999999886522 2 223566688889999999999999998887654 444555
Q ss_pred HHHHHhhh
Q 007725 222 DAKEILMK 229 (591)
Q Consensus 222 ~a~~~l~~ 229 (591)
++...++.
T Consensus 220 ~ay~~lg~ 227 (243)
T PRK10866 220 NAYRQLQL 227 (243)
T ss_pred HHHHHcCC
Confidence 55555443
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.94 E-value=0.00073 Score=75.15 Aligned_cols=120 Identities=13% Similarity=-0.035 Sum_probs=103.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
...+....+.....++.++|+++++++|+..|.++. +|.-+|++|-+.++.+.|.+.|...++..|...-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K---------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK---------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH---------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 445566667777788889999999999999888866 89999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
|..++..--..|+...|...|+++.-.+|++...|-..-..+.+.+...
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999888777666666655443
No 173
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.00077 Score=74.27 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=96.5
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
..++++.+.....+.+...++...+++..-.++.+.++|++|+..-+ ..+.+.. .....+-.+.|+++++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik----k~~~~~~------~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK----KNGALLV------INSFFFEKAYCEYRLN 93 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH----hcchhhh------cchhhHHHHHHHHHcc
Confidence 34577778877778888888889999999999999999999984333 2222110 0112257899999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
+.++|+.+++ .+++...+.+..+|++++++++|++|+..|+..++.+-++.+
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 9999999999 557888889999999999999999999999998877666543
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.88 E-value=0.00025 Score=76.63 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=97.9
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~ 192 (591)
+...++|+.|+..|++....+|.. ..-++.+|+..++..+|++.+.++|+.+|.+...+...+..+..
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pev------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPEV------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCcH------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344678999999999988876543 44588888889999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 193 lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
.++++.|+..++++..+.|.+...|..|.++.-.+++++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999887764
No 175
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.87 E-value=0.00011 Score=54.15 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=39.0
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a 189 (591)
+|+.+|.+|..+|++++|++.|+++|+.+|+++.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 577899999999999999999999999999999999998864
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.00069 Score=66.73 Aligned_cols=126 Identities=16% Similarity=0.058 Sum_probs=93.9
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-----------ccchhhh
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----------KQYDECI 166 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-----------g~y~eAi 166 (591)
..+-...+++.+|..+++.|+|.+|+..|++.+...|.++. ...+++.+|.|++.. +...+|+
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------hhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 34455678899999999999999999999999999999875 244677788876554 4456899
Q ss_pred hhcceeeeccccchHH-----------------HHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHH
Q 007725 167 KVGSEVLAYDAKNVKA-----------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEI 226 (591)
Q Consensus 167 ~~~~~AL~ldP~~~~a-----------------~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~ 226 (591)
..|+..|+.-|++..+ -+..|.-|.+.|+|..|+..++.+++.-|+.. +++..+.++..+
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 9999999998875322 23468888999999999999999999999865 455566666666
Q ss_pred hhh
Q 007725 227 LMK 229 (591)
Q Consensus 227 l~~ 229 (591)
++.
T Consensus 191 l~~ 193 (203)
T PF13525_consen 191 LGL 193 (203)
T ss_dssp TT-
T ss_pred hCC
Confidence 653
No 177
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0005 Score=71.22 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=69.9
Q ss_pred ccccceeeeccccchhhhhhcceeeecccc----chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (591)
Q Consensus 149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~ 224 (591)
|.--|.-|++.++|..|+..|+++|+.... ++..|+||+.|.+.+|+|..|+.|+.+|+.++|.+..++.+=..|.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 344567788999999999999999987543 6778999999999999999999999999999999988877777776
Q ss_pred HHhhh
Q 007725 225 EILMK 229 (591)
Q Consensus 225 ~~l~~ 229 (591)
..|..
T Consensus 164 ~eLe~ 168 (390)
T KOG0551|consen 164 LELER 168 (390)
T ss_pred HHHHH
Confidence 66665
No 178
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.0011 Score=71.76 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=104.3
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHh-hhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA-KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kA-L~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
.++.+..-......+.+.++.-+.+.+|-.|+|..|.+..... |...+... ....-....+|+|+|.++++++.|..+
T Consensus 224 ~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~-~T~q~~~cif~NNlGcIh~~~~~y~~~ 302 (696)
T KOG2471|consen 224 LAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT-ITPQLSSCIFNNNLGCIHYQLGCYQAS 302 (696)
T ss_pred HHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc-ccchhhhheeecCcceEeeehhhHHHH
Confidence 3333333333344566778888899999999999999886643 22111100 011123456789999999999999999
Q ss_pred hhhcceeee-c--------cc---------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 166 IKVGSEVLA-Y--------DA---------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 166 i~~~~~AL~-l--------dP---------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+.+|.+||+ . .| ..-..+||.|..|...|+.-+|..+|.++.+.--.++.+|-+|.+|.-.
T Consensus 303 ~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 303 SVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999995 1 11 3466899999999999999999999999999998999999999998543
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.71 E-value=0.00036 Score=67.06 Aligned_cols=124 Identities=12% Similarity=0.114 Sum_probs=98.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc--c
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N 179 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--~ 179 (591)
+...+.+|+.+...|+|.+|..+|.+++.- .-.++ ..++.++.+.+..+++..|...++...+.+|. .
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 456788999999999999999999999873 22333 26788999999999999999999999999884 5
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~ 236 (591)
++.....|.+|..+|++++|...|+.++...|+. .+...+.+-..+.++..++...
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHH
Confidence 7788888999999999999999999999888763 3444555544444443333333
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.00013 Score=74.00 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=82.7
Q ss_pred ccccceeeeccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhH
Q 007725 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRD 222 (591)
Q Consensus 149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~ 222 (591)
+||.+.-+++.|+|.+|...|..-|+..|+. +.++|++|.+++.+|+|++|...|..+++-.|+++ +....|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5788888899999999999999999988864 77999999999999999999999999999988764 66788888
Q ss_pred HHHHhhhccCCCCCccchHHHH
Q 007725 223 AKEILMKEDGHHGPRGLLIEEI 244 (591)
Q Consensus 223 a~~~l~~~~~a~~~~~~~i~e~ 244 (591)
+...+++...+...++.++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHC
Confidence 8888888777776666666443
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.67 E-value=0.00065 Score=68.50 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=99.9
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
-+..|++.|...++.|+|.+|++.|++.....|..+. ...+.+.++.++++.++|++|+...++=|++.|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999999999988777654 2446778999999999999999999999999997754
Q ss_pred ---HHHHhccchhh--------hhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhcc
Q 007725 182 ---ALYRRGQAYKD--------IGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKED 231 (591)
Q Consensus 182 ---a~~~rg~al~~--------lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~~~ 231 (591)
++|-+|.+++. ...-.+|+..++..+..-|+.. ++...+..+...+..++
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 67778877654 3445678999999999999863 56666666666665443
No 182
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.66 E-value=0.0003 Score=63.92 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=55.8
Q ss_pred ceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 153 a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
|.++...|+.+.|++.|.++|.+.|.++.+|.||+.+|.-.|+.++|+.++++|+++.-+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 3445578999999999999999999999999999999999999999999999999997654
No 183
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.59 E-value=0.0011 Score=45.40 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 136 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~ 136 (591)
++.+.++|..++..|+|++|+.+|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999998863
No 184
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0013 Score=74.97 Aligned_cols=125 Identities=26% Similarity=0.427 Sum_probs=108.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec--cccchhhhhhcceeeecc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--TKQYDECIKVGSEVLAYD 176 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~--lg~y~eAi~~~~~AL~ld 176 (591)
....+..++..||.+|..++|.+|.-.|..++.+.|.+.. ....+..|.+.||.. +++|..++..|+-++...
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----VVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 4445667899999999999999999999999999996532 356678899988865 569999999999999999
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
|...++++.|+.+|..+++++-|++++.-....+|.+..+...+.+++..+.
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~ 175 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE 175 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887776666666663
No 185
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.55 E-value=0.0027 Score=67.33 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=95.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
+......+..+...|++++|.+....+++..-+.. ++.+-- .++.+++..-++..++.++..|+++..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----------L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----------LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----------HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 44455566678889999999999999988643321 111111 247789999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR 237 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~ 237 (591)
++.+|..+++.+.|.+|..+|+.|++..|.. ..+..++.+..++++...+.+.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999999999999999999998864 45788888888887655444333
No 186
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.54 E-value=0.0015 Score=44.55 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 136 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~ 136 (591)
++.+..+|..++..|+|++|+++|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999998864
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.51 E-value=0.00026 Score=49.27 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725 125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (591)
Q Consensus 125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~ 167 (591)
+|++||+++|+++. +|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~---------a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE---------AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH---------HHHHHHHHHHHCcCHHhhcC
Confidence 48999999999977 89999999999999999974
No 188
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.48 E-value=0.00025 Score=63.19 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=78.2
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccc---eeeeeeccccceeeeccccchhhhhhcceeeec-------
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGR---TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------- 175 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~---~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l------- 175 (591)
....|...+..|-|++|...|.+|.+.....|..|.- -.-..|+.-++.++..+|+|++++...+++|.+
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 3445566778899999999999999988877753322 233557888999999999999999999888864
Q ss_pred cc----cchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 176 DA----KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 176 dP----~~~~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
+. -+..+.|+|+.++..+|+.++|+..|+.+.+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 22 3577889999999999999999999987754
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.48 E-value=0.00033 Score=64.75 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHhcccccccccchhHHHHHHHhhhcccccccc-------------ccceeeeeeccccceeeeccccchhhhhhcceee
Q 007725 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173 (591)
Q Consensus 107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL 173 (591)
...|......++...++..|.+++.+..++.-. .....+..++..++.++...|+|++|+..|++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 333444455556666666666666655433210 0112233355567777778888888888888888
Q ss_pred eccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 174 ~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
.++|.+-.+|..+-.+|...|++.+|+..|+++.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8888888888888888888888888888887663
No 190
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.41 E-value=0.0023 Score=49.31 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+.+|.++.+++++|+|++|..+++.+|+++|+|..+......++.++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999988888887754
No 191
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.38 E-value=0.0053 Score=60.47 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=80.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
-..-|..++.+.+..+|+.+..+.-+|..+...|+|+.|.+.|.-.++++|... ++..|||..++-.|+|.
T Consensus 80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---------Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------YAHLNRGIALYYGGRYK 150 (297)
T ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---------HHHhccceeeeecCchH
Confidence 345677888999999999999999999999999999999999999999988864 47899999999999999
Q ss_pred hhhhhcceeeeccccchHH
Q 007725 164 ECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a 182 (591)
-|.+++.+--.-||+++--
T Consensus 151 LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred hhHHHHHHHHhcCCCChHH
Confidence 9999998888888887643
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.0029 Score=63.84 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=89.6
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
+..+.....+|....+-|+.+.|..+|++.-+....... -........|.+.+|+-.++|..|...|++.+..||.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~---~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG---LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN 285 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc---cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc
Confidence 556667777888888888888888887744322111100 00123467789999999999999999999999999999
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
+.+..+.+.|+..+|+..+|++.++.++.++|...
T Consensus 286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999753
No 193
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00065 Score=70.80 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=80.1
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch------
Q 007725 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV------ 180 (591)
Q Consensus 107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~------ 180 (591)
.-+|.++|+.|+|++|+..|+-+-+.+..+ ..+++|++.|++-+|.|.+|.....++-+- |-..
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~---------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-pL~~RLlfhl 130 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAP---------AELGVNLACCKFYLGQYIEAKSIAEKAPKT-PLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCC---------cccchhHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHH
Confidence 346788999999999999999887743333 238999999999999999998877766431 1111
Q ss_pred ---------------------HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 181 ---------------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 181 ---------------------~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+-...++.+++-.-+|.+|++.|++.+.-+|++-.+.-.+..|..++
T Consensus 131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl 198 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL 198 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc
Confidence 11223455566667889999999999988888766656666665554
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.30 E-value=0.00026 Score=73.31 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=89.7
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc-----
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD----- 176 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld----- 176 (591)
.+..+..-|+.+...++|.+|..+|.++..+...... ...-..+|.+.+.||.+. ++.+|+..|++|+.+-
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 4567777888888999999999999999886543211 111234677888888666 9999999999999873
Q ss_pred c-cchHHHHHhccchhhh-hhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCC
Q 007725 177 A-KNVKALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 177 P-~~~~a~~~rg~al~~l-g~~eeAl~~lekAl~l~P~~~------~a~~~L~~a~~~l~~~~~a 233 (591)
+ .-++++.++|.+|... +++++|+++|++|+.+--... .+...++.+...++++.++
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 2 3477899999999998 999999999999998743222 2344444555555444433
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.28 E-value=0.0022 Score=59.47 Aligned_cols=83 Identities=8% Similarity=0.048 Sum_probs=67.5
Q ss_pred hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-----------
Q 007725 93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------- 161 (591)
Q Consensus 93 ~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~----------- 161 (591)
+....+.+-...+.+.++..+|+.++|.+|+..|++-|++.|.++. ...+++-+|.|++++..
T Consensus 37 ~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------vdYa~Y~~gL~~~~~~~~~~~~~~~~dr 110 (142)
T PF13512_consen 37 DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------VDYAYYMRGLSYYEQDEGSLQSFFRSDR 110 (142)
T ss_pred HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------ccHHHHHHHHHHHHHhhhHHhhhccccc
Confidence 3334445556678899999999999999999999999999999986 46688889999988876
Q ss_pred ----chhhhhhcceeeeccccchH
Q 007725 162 ----YDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 162 ----y~eAi~~~~~AL~ldP~~~~ 181 (591)
...|..+|+++|+.-|++.-
T Consensus 111 D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 111 DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred CcHHHHHHHHHHHHHHHHCcCChh
Confidence 77788888888877776643
No 196
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0055 Score=62.83 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=56.9
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 174 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ 174 (591)
..+..+.+.|..+|+.|+|++|++.|..|++..-..|. +-+|++.|+++.++|..|++...+.|+
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------lAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------LAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------hHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998666654 678999999999999999988777664
No 197
>PRK10941 hypothetical protein; Provisional
Probab=96.22 E-value=0.0011 Score=68.10 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=70.3
Q ss_pred eeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725 143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (591)
Q Consensus 143 ~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~ 219 (591)
.++.....|+-.+|.+.++|+.|+.++++.+.++|+++.-+--||.+|.++|.+..|+.||+..++..|+++.+...
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555778999999999999999999999999999999999999999999999999999999999999998865443
No 198
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.14 E-value=0.004 Score=57.46 Aligned_cols=122 Identities=23% Similarity=0.180 Sum_probs=88.4
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccce-eeeccccchhhhhhcceeeecc
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYD 176 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~-~y~~lg~y~eAi~~~~~AL~ld 176 (591)
........+...+..+...++|..++..+.+++...+.... ....... +|...++++.|+..+.+++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 160 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---------AEALLALGALYELGDYEEALELYEKALELD 160 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45556667777788888888888888888888876555421 1222333 7888888888888888887777
Q ss_pred c---cchHHHHHhccchhhhhhHHHHhhhcccccccCCC-CChHHHHHhHHHHHhh
Q 007725 177 A---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGTIADVLRDAKEILM 228 (591)
Q Consensus 177 P---~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~-~~~a~~~L~~a~~~l~ 228 (591)
| .....++.++..+...+++++|+..+.+++...+. ...++..+..+....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 6 46677777777777888888888888888888887 4666666666655544
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.12 E-value=0.0014 Score=44.91 Aligned_cols=34 Identities=35% Similarity=0.677 Sum_probs=28.8
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
+++|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3678999999999999999999999999988853
No 200
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0077 Score=61.81 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=83.8
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHH----------------HHhhhccccccc-------c
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY----------------LLAKKNLQGIHS-------S 139 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y----------------~kAL~l~p~~~~-------~ 139 (591)
.++..+...|.+-....|+..++..-.+..+++.+.|.+|++.. +.||.+..++-. .
T Consensus 58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh
Confidence 34555555555555556666666666666677777777776653 223332222110 0
Q ss_pred ccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007725 140 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 140 e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
-..+--+....|.|-..++.|+|++|++.|..|++..--++-.-|+.+.|+++.++|+.|+++....
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0111224467889999999999999999999999998888888999999999999999998765443
No 201
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.87 E-value=0.0029 Score=68.66 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=95.0
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
...+..|..-|.++++..+..+.++-+.+..+++.++|..|+.-..+||+++|.. ..+|+.+|.++.++++
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~---------~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY---------IKAYVRRGTAVMALGE 87 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh---------hheeeeccHHHHhHHH
Confidence 3567888888999999999999999999999999999999999999999998776 4499999999999999
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhhh--hHHHHh
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG--RLEEAV 200 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg--~~eeAl 200 (591)
|.+|..+|+....+.|+.+++.--...|-.... +|+.|+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999988777766654333 355444
No 202
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.87 E-value=0.0016 Score=69.20 Aligned_cols=103 Identities=13% Similarity=0.227 Sum_probs=79.2
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccc---------cccceeeeeeccccceeeeccccchhhhhhcceeee
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 174 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~---------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ 174 (591)
+.....+..+|++++|..|+-.|..+|+++..-.. .+...+...+-..+..||+++++.+.|+....+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34445566778888888888888888887653211 011122223445688999999999999999999999
Q ss_pred ccccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007725 175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 175 ldP~~~~a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
++|.+..-|.+.+.|+..+.+|.+|...+-.|
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766554
No 203
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.83 E-value=0.0028 Score=69.80 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=96.9
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (591)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg 187 (591)
..|-.+...|+...|+.|+..|+...|.... .-.+|++.++++-+-..+|-.++.++|.++-..+-.+|.+|
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 3445566789999999999999998876543 24689999999999999999999999999988899999999
Q ss_pred cchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 188 ~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
.+|..+.+.+.|++.|+.|++++|++.++.+-|..+..
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999888877655
No 204
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.58 E-value=0.0043 Score=69.59 Aligned_cols=130 Identities=12% Similarity=-0.045 Sum_probs=102.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
...++-++..|-..|+|++|+.+..+||...|..++ +|+-.|.+|-..|++.+|.+..+.|-.+|+.+--.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 356677888888999999999999999999999876 89999999999999999999999999999988888
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccC--CCC-----ChHHHHH--hHHHHHhhhccCCCCCccchH
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVS--PDD-----GTIADVL--RDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~--P~~-----~~a~~~L--~~a~~~l~~~~~a~~~~~~~i 241 (591)
....+..+.+.|++++|...+..-..-+ |.. .-+|..+ +.+..+.+++..+...+..+.
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888899999999999888765544 211 1134433 444555555555555554443
No 205
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.56 E-value=0.0061 Score=71.08 Aligned_cols=88 Identities=13% Similarity=0.016 Sum_probs=47.9
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHh
Q 007725 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR 186 (591)
Q Consensus 107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~r 186 (591)
..+...|.+.|++++|.+.|.+. |..|. ...|..+-.++...|+++.|...+++.++++|++...|..+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~----~~~p~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA----PFKPT-------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC----CCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 33444455555555555555442 11111 11344455555556666666666666666666666666666
Q ss_pred ccchhhhhhHHHHhhhccc
Q 007725 187 GQAYKDIGRLEEAVSDLSN 205 (591)
Q Consensus 187 g~al~~lg~~eeAl~~lek 205 (591)
..+|...|+|++|.+.++.
T Consensus 535 ~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 6666666666666665543
No 206
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.004 Score=65.09 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=79.6
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~ 192 (591)
+....+|..|+.+.+-.+.+.....+ .+-.=+|.||+.+|+|++|+..|+.+..-+.-+.+.+.+++.|++.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~--------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEED--------SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY 103 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhH--------HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH
Confidence 45678899999998887765433221 1233478999999999999999999998888889999999999999
Q ss_pred hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 193 lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+|.|.+|....++| |+.+.-...+-.+--++
T Consensus 104 Lg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence 99999999888877 56655444444444444
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.43 E-value=0.0053 Score=56.59 Aligned_cols=102 Identities=25% Similarity=0.324 Sum_probs=73.7
Q ss_pred cccccccchhHHHHHHHhhhcccc-ccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-chHHHHHhccc
Q 007725 112 ELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-NVKALYRRGQA 189 (591)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-~~~a~~~rg~a 189 (591)
.++..|++..|+..|.+++...+. .. ....+..++..+...+++..++..+.+++...+. ....++.++.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE-------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence 788888888888888888775552 11 1223445555577778888888888888888888 68888888888
Q ss_pred hhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007725 190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (591)
Q Consensus 190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L 220 (591)
+...+++++|+..+.+++...|........+
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 242 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELDPDNAEALYNL 242 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhCcccHHHHhhH
Confidence 8888888888888888888887643333333
No 208
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.35 E-value=0.0082 Score=38.51 Aligned_cols=33 Identities=36% Similarity=0.665 Sum_probs=28.4
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
.+|+++|.++...+++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578889999999999999999999998888753
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.26 E-value=0.0028 Score=70.48 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=92.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
.+..+..-+.......|+.+-.+...|..+..+|+.++|++.|.+++...... ..+...|+..++.||.-+.+|+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHH
Confidence 44556666666677788999999999999999999999999999998543322 3455678999999999999999
Q ss_pred hhhhhcceeeeccc-cchHHHHHhccchhhhhhH-------HHHhhhcccc
Q 007725 164 ECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRL-------EEAVSDLSNA 206 (591)
Q Consensus 164 eAi~~~~~AL~ldP-~~~~a~~~rg~al~~lg~~-------eeAl~~lekA 206 (591)
+|.+++.+.++.+. ..+-++|-.|.||..+++. ++|.+.++++
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 99999999988644 3556677788899999988 5555555444
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.07 E-value=0.019 Score=60.94 Aligned_cols=182 Identities=13% Similarity=0.042 Sum_probs=119.9
Q ss_pred hChh-HHHH--hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhc
Q 007725 35 ANPE-LMRI--ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQG 110 (591)
Q Consensus 35 ~~p~-l~r~--A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~G 110 (591)
+|.+ ||+. |...+-..+.++.++.++.+..-+..-...++-. +.++..++.+++...........+....+....=
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 3444 7776 4444667788999988888876432222222222 3333444556666666666666666666766666
Q ss_pred ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725 111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (591)
Q Consensus 111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al 190 (591)
...+..|+|+.|+++........--.+. ..+..+..++.-.+...+ --+...|..+..+++++.|+.+.+-..-+.+|
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~-~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKD-VAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 6789999999999997655442111111 011111222222222222 23577899999999999999999999999999
Q ss_pred hhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725 191 KDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (591)
Q Consensus 191 ~~lg~~eeAl~~lekAl~l~P~~~~a~~~ 219 (591)
++.|+..++-..++.+-+.+|+ ++++..
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePH-P~ia~l 301 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPH-PDIALL 301 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence 9999999999999999999885 334333
No 211
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.68 E-value=0.013 Score=62.13 Aligned_cols=125 Identities=13% Similarity=0.080 Sum_probs=89.8
Q ss_pred ChhHHHH-hhhhhccCCCchhhhhhhh-hcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccc
Q 007725 36 NPELMRI-ATENMKNMRPEDLKCAAEQ-LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL 113 (591)
Q Consensus 36 ~p~l~r~-A~e~m~~~~pe~~~~a~e~-l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~ 113 (591)
+|+++-. |...+.-...++...+.++ +++.-.+. ....+....+.+....++.++..++..++.+..+..+|..+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 4663333 4444444444444443333 33322222 33335555666666777888888888999999999999999
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceee
Q 007725 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173 (591)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL 173 (591)
++.+.|.+|-.+|+.||.+-|... .|.-+|.+|.++|+..+|.+.+++++
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~~----------~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSAS----------DYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999877764 47778999999999999988888876
No 212
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.64 E-value=0.013 Score=39.38 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=28.8
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
.++|++|.++..+|++++|+..|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478899999999999999999999999888863
No 213
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.62 E-value=0.02 Score=58.99 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=83.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+....+.+....+.|+.++|...|..|+.+.|.+|. ++...|.....-++.-+|-.+|.+||.++|.|.+
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------ILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3444455566778899999999999999999999987 6677777777777888899999999999999999
Q ss_pred HHHHhccchhhhh----hHHHHhhhcccccccCCCC-ChHHHHHhHHHH
Q 007725 182 ALYRRGQAYKDIG----RLEEAVSDLSNAHEVSPDD-GTIADVLRDAKE 225 (591)
Q Consensus 182 a~~~rg~al~~lg----~~eeAl~~lekAl~l~P~~-~~a~~~L~~a~~ 225 (591)
++.+|+...--.. ++-+.+.+....+..-+.. ........+..+
T Consensus 186 ALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf 234 (472)
T KOG3824|consen 186 ALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYF 234 (472)
T ss_pred HHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 9999988764332 3334555555555544543 333444444433
No 214
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=0.037 Score=53.85 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=82.2
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
.-.+.....++..++..+++++|+..+..++..-.+. .+...+-.+++.+.+.+|+|++|+..++..- ++.+
T Consensus 86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w 157 (207)
T COG2976 86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE------NLKALAALRLARVQLQQKKADAALKTLDTIK--EESW 157 (207)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccH
Confidence 3345567778888999999999999999998753332 1234456789999999999999999887764 2222
Q ss_pred -hHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 180 -VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 180 -~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
+..-..+|.+|...|+-++|+..|++|+..++.
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 334567999999999999999999999998743
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.50 E-value=0.049 Score=59.68 Aligned_cols=125 Identities=16% Similarity=0.096 Sum_probs=89.0
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-----------cc-----cceeeeeeccccc
Q 007725 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-----------SE-----GRTLLLACSLNSM 153 (591)
Q Consensus 90 ~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-----------~e-----~~~l~~~~~~Nla 153 (591)
+-.++++..+++.+.++.-++..... -..+|+++|+++++..+..-. .+ ....+..+...++
T Consensus 189 kaA~eALei~pdCAdAYILLAEEeA~--Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLA 266 (539)
T PF04184_consen 189 KAAKEALEINPDCADAYILLAEEEAS--TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLA 266 (539)
T ss_pred HHHHHHHHhhhhhhHHHhhccccccc--CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHH
Confidence 44556677788888888776654322 246677777777764432110 01 1223455667899
Q ss_pred eeeeccccchhhhhhcceeeecccc--chHHHHHhccchhhhhhHHHHhhhccccccc-CCCCChH
Q 007725 154 SCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDDGTI 216 (591)
Q Consensus 154 ~~y~~lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-~P~~~~a 216 (591)
.|.+++|+.+|||+.+...++..|. +...++++-.+|..+++|.++...+.+.-.+ -|+...+
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 9999999999999999999988774 6779999999999999999999999886433 2444443
No 216
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.40 E-value=0.023 Score=65.59 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=109.8
Q ss_pred hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 78 ~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
+..+..++..|.+...+-++..|+..-+..-+|-.+++.|++++|..+. +++...+.+.+ ..+--+-.||+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~--------~tLq~l~~~y~ 88 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYGLKGTDD--------LTLQFLQNVYR 88 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhccCCCCch--------HHHHHHHHHHH
Confidence 4455678888999999999999988888777888999999999999554 45544443321 13445788999
Q ss_pred ccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhccCCCC
Q 007725 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDGHHG 235 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~-~a~~~L~~a~~~l~~~~~a~~ 235 (591)
.++++++|+.+|++++..+|. -+.++.+=.||.+.+.|.+=.+.--+..+.-|+++ ..|..+..+...+...+....
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc
Confidence 999999999999999999999 88888888899998888763333333334567765 457777777666655544433
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.087 Score=55.11 Aligned_cols=113 Identities=10% Similarity=-0.002 Sum_probs=66.9
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-cccchHH
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVKA 182 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-dP~~~~a 182 (591)
+.+...+..++.+|++.+|...+.+.|+-.|.+-. ++...-.+|+-.|+...-...++++|-. +++-+-+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll---------a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~ 174 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL---------AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY 174 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhh---------hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH
Confidence 34455566778889999999999999988777632 2222333344455555555555555544 4443333
Q ss_pred HHH---hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 183 LYR---RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 183 ~~~---rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
.|. .+.++.+.|-|++|.+..+++++++|.+.=+...+..+.+
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle 220 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLE 220 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence 222 3445666677777777777777777766544444444433
No 218
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.37 E-value=0.017 Score=57.45 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=56.1
Q ss_pred eeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 155 ~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
...+.++++.|.+.|.+++++-|.+...||++|.-..+.|+++.|...|++.++++|.+-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345778999999999999999999999999999999999999999999999999999864
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.28 E-value=0.0067 Score=42.54 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=20.1
Q ss_pred HHHHhccchhhhhhHHHHhhhccccccc
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
+|.++|.+|..+|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677788888888888888888875544
No 220
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.23 E-value=0.034 Score=64.87 Aligned_cols=117 Identities=9% Similarity=-0.067 Sum_probs=85.8
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.+..+-..+.+.|++++|.++|....+.....|. ...|..+..+|.+.|++++|.+.+++.- ..| +...|.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~ 498 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWA 498 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHH
Confidence 3455556677888888888888877653333332 2257778888889999999999887652 334 455688
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
.+..++...|+++.|...+++.++++|++...+..|..+....++.
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 8888888999999999999999999998877777777766655543
No 221
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.23 E-value=0.0081 Score=71.83 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=80.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc----
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---- 178 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~---- 178 (591)
...+..+|..+...|++++|+..|.+++........ ......++.+++.+++..|++++|...+++++.+...
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 345667788889999999999999999986553221 0111235678899999999999999999998876321
Q ss_pred ----chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 179 ----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 179 ----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
....++.+|.++...|++++|...+++++.+..
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 233466788899999999999999999987643
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.22 E-value=0.0067 Score=63.68 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=85.5
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-----
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----- 178 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----- 178 (591)
..+...|+.+...+.|+++++.|++|+++...+.+ .-+...++..++..|-++++|++|+-+..+|.++--.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD---AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC---ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 56677899999999999999999999998655433 2344567889999999999999999999999876321
Q ss_pred -----chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 179 -----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 179 -----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
..-++|+++.+|..+|++-+|.++++.|-++.
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 23467889999999999999999999987764
No 223
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.19 E-value=0.024 Score=39.70 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccc
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQ 134 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p 134 (591)
++.++|+.|.+.|+|++|+++|+++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 477899999999999999999999776543
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.15 E-value=0.027 Score=38.31 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=29.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (591)
+.+..+|..+...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57889999999999999999999999999873
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.023 Score=56.65 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=101.4
Q ss_pred hhccCCCchhhh----hhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-ccch
Q 007725 46 NMKNMRPEDLKC----AAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFS 120 (591)
Q Consensus 46 ~m~~~~pe~~~~----a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~-g~y~ 120 (591)
.++..+..|... +..-.+...|++..... +.+..-|....++.. .+..+..+|..|-.. .+++
T Consensus 64 h~k~~skhDaat~YveA~~cykk~~~~eAv~cL-----------~~aieIyt~~Grf~~-aAk~~~~iaEiyEsdl~d~e 131 (288)
T KOG1586|consen 64 HLKAGSKHDAATTYVEAANCYKKVDPEEAVNCL-----------EKAIEIYTDMGRFTM-AAKHHIEIAEIYESDLQDFE 131 (288)
T ss_pred HHhcCCchhHHHHHHHHHHHhhccChHHHHHHH-----------HHHHHHHHhhhHHHH-HHhhhhhHHHHHhhhHHHHH
Confidence 345555444432 44445555666554432 223333333333222 255666777777665 8999
Q ss_pred hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc------hH-HHHHhccchhhh
Q 007725 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN------VK-ALYRRGQAYKDI 193 (591)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~------~~-a~~~rg~al~~l 193 (591)
.||.+|+.+-+....+.. ...--.|++..+..--.+++|.+||..|+++.+-.-+| ++ .++.-|.||+..
T Consensus 132 kaI~~YE~Aae~yk~ees---~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 132 KAIAHYEQAAEYYKGEES---VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHcchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 999999999987665432 22233466667777777899999999999887654443 33 455678889888
Q ss_pred hhHHHHhhhcccccccCCCCChH
Q 007725 194 GRLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 194 g~~eeAl~~lekAl~l~P~~~~a 216 (591)
.+.-.+...+++...++|.....
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 88888999999999999987654
No 226
>PLN03077 Protein ECB2; Provisional
Probab=93.85 E-value=0.031 Score=66.82 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
...+..+...+.+.|++++|.+.+++. .+.|+. ..|..+-.++...++.+.+....+++++++|++...
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~----------~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP----------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH----------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 456677777888888888888888764 222322 134444444566777888888888888899999999
Q ss_pred HHHhccchhhhhhHHHHhhhccc
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSN 205 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lek 205 (591)
|..++.+|...|+|++|.+..+.
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999999998876643
No 227
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.49 E-value=0.021 Score=52.31 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=66.4
Q ss_pred eccccceeeeccc---cchhhhhhcceeee-ccc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 148 CSLNSMSCYLKTK---QYDECIKVGSEVLA-YDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 148 ~~~Nla~~y~~lg---~y~eAi~~~~~AL~-ldP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
+.+|++.|+.+.. +..+.|..++..++ -.| ...+++|.++..++++++|+.++.++...++.+|+|..+...-..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4556666665543 55677888888875 444 457789999999999999999999999999999999999988888
Q ss_pred HHHHhhh
Q 007725 223 AKEILMK 229 (591)
Q Consensus 223 a~~~l~~ 229 (591)
++.++.+
T Consensus 114 ied~itk 120 (149)
T KOG3364|consen 114 IEDKITK 120 (149)
T ss_pred HHHHHhh
Confidence 8888754
No 228
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.46 E-value=0.022 Score=59.02 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=78.4
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-cccchhhhhhcceeeeccccchHHHH
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~-lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
|..+.+...+.+..+.|...|.+|++..+...+ +|...|...++ .++.+.|...|+++++.-|.+...|.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~---------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH---------VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH---------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 334445555556678888888888864443333 56677777455 45566689999999988888888888
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhh
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILM 228 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~ 228 (591)
....-+..+++.+.|...|++++..-|... .+|.....-+...+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 888888888899999999999988877654 45555555555444
No 229
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.013 Score=65.40 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=86.1
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~ 183 (591)
..+-+.+..+|+..+|..+++.|...+...|.|. ....+.....+++.||+++.+.+.|++.+.+|-+.||.++-.-
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 4567788889999999999999999999877763 3455677888999999999999999999999999999988777
Q ss_pred HHhccchhhhhhHHHHhhhccccccc
Q 007725 184 YRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 184 ~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
+..-.+....+.-++|+..+.+....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 77777777778888888777655443
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.05 Score=56.08 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=71.7
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhc-----------------
Q 007725 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG----------------- 169 (591)
Q Consensus 107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~----------------- 169 (591)
...+..+...|++.+|...|..++...|.... +..-++.||+..|++++|...+
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a 208 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSE---------AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA 208 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccch---------HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence 33444555555556666656665555555432 3444555555555554433322
Q ss_pred -----------------ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhh
Q 007725 170 -----------------SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILM 228 (591)
Q Consensus 170 -----------------~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~l~ 228 (591)
.+.+..||++..+-+.++..|...|++++|++.|-..++.+-. +..++..|-.+...++
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2223448889999999999999999999999888888777654 4567777777666665
No 231
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.35 E-value=0.022 Score=55.09 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=86.7
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee-ccccchHHHHHhccchhhhhhH
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-YDAKNVKALYRRGQAYKDIGRL 196 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~-ldP~~~~a~~~rg~al~~lg~~ 196 (591)
+.+..++.-.+.+...|.... .+.++..+.++|+|.||+..|.+++. +--+++..+.-++++.+.++++
T Consensus 71 dP~R~~Rea~~~~~~ApTvqn----------r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 71 DPERHLREATEELAIAPTVQN----------RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHH----------HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 445555555666666666543 67899999999999999999999875 5668889999999999999999
Q ss_pred HHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 197 EEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 197 eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
.+|...+++..+.+|.. ++-.-.++++....+++..+....+.
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence 99999999999999874 55666777777777665544444333
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.016 Score=58.06 Aligned_cols=85 Identities=13% Similarity=0.012 Sum_probs=70.2
Q ss_pred eccccceeeeccccchhhhhhcceeeec--------cc----------cchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAY--------DA----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~l--------dP----------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
++...|.-++++|+|.+|+..|..||.. .| .....+.|..+|+...|+|-++++.+...|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 5566888899999999999999999753 22 33447899999999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHhhhccC
Q 007725 210 SPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 210 ~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
+|.+.+++...++++...=+..+
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~e 282 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAE 282 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHH
Confidence 99999999888887665544333
No 233
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.60 E-value=0.079 Score=45.38 Aligned_cols=65 Identities=25% Similarity=0.202 Sum_probs=53.0
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhh
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMK 229 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~ 229 (591)
.+..++++++.+|++..+.|.++.++...|++++|++.|-..+..++++ ..++..+-.+...++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3566778888999999999999999999999999999999999999876 5677777777777754
No 234
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.43 E-value=0.066 Score=55.36 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=62.8
Q ss_pred ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
+.+.-.++.|+.++|...|+.|+.++|+++.++...|.....-++.-+|-.+|-+|+.++|.+.++.-+..+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334445678999999999999999999999999999999988899999999999999999999877655443
No 235
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.28 E-value=0.066 Score=65.20 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=51.9
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc-ccchH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVK 181 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld-P~~~~ 181 (591)
.+..+...|.+.|++++|+..|.+.... .|+ ...|..+..+|.+.|++++|++.+.+.++.. +.+..
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 3444444555666666666666655542 121 1235555556666666666666666655433 23455
Q ss_pred HHHHhccchhhhhhHHHHhhhcccc
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
.|..+..+|.+.|++++|+..|++.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666666666666666666666654
No 236
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.24 E-value=0.049 Score=60.39 Aligned_cols=111 Identities=11% Similarity=0.007 Sum_probs=90.7
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (591)
Q Consensus 97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld 176 (591)
+.+......+..-.-.+.-+|+..+|+.||..++.+.+++.. -..++.+|.++.+.|...+|--.+..|+.-.
T Consensus 207 q~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------di~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 207 QKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------DIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred hcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------cchhhhHHHHHHHcccccchhheeehhccCC
Confidence 334444444443334445688999999999999999887643 3467889999999999999999999999888
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
|....-||.++.+|..++.|...+-+|..+.+.+|...
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 88788899999999999999999999999999999753
No 237
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.21 E-value=0.074 Score=61.61 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=77.5
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~ 192 (591)
....++|.+|+....+.++..|+.+. +..--|..+.++|++++|..+++..-..-+++...+-.+-.||.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~---------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALY---------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD 89 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence 45678899999999999998777643 445567788999999999976666656667788888899999999
Q ss_pred hhhHHHHhhhcccccccCCC
Q 007725 193 IGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 193 lg~~eeAl~~lekAl~l~P~ 212 (591)
++++++|+..|++++..+|.
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCc
Confidence 99999999999999999998
No 238
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.74 E-value=0.017 Score=44.49 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=32.3
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR 186 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~r 186 (591)
|++.+|..++++|+|.+|.++++.+|+++|+|..+..-+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 566788899999999999999999999999998876443
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.48 E-value=0.11 Score=34.69 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (591)
++++.+|.++++.|++++|++.|++.+...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788999999999999999999999998775
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=0.17 Score=51.57 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=77.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccc----cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~----~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l 159 (591)
.++.+.+++.+.+....+. .+..+++.| -..+++.+|.-.|++.-+..+..+. +....+.|++.+
T Consensus 152 r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~---------llnG~Av~~l~~ 220 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPL---------LLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChH---------HHccHHHHHHHh
Confidence 3445555555555443332 222222222 2344578888888877664333332 566788888888
Q ss_pred ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc-ccccccCCCCCh
Q 007725 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL-SNAHEVSPDDGT 215 (591)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l-ekAl~l~P~~~~ 215 (591)
++|++|...++.+|.-+++++..+.|+-.+-..+|.-.++...+ .+....+|.++-
T Consensus 221 ~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 88888888888888888888888888888888888876665544 444445666553
No 241
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.42 E-value=0.1 Score=33.04 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=28.3
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (591)
..+..+|..++..++|++|+..|.+++.+.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35788899999999999999999999988664
No 242
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=0.075 Score=54.04 Aligned_cols=112 Identities=17% Similarity=0.059 Sum_probs=81.0
Q ss_pred ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725 111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (591)
Q Consensus 111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al 190 (591)
+++.+..+++-|....++..+++.+.... -++.+|++++.- ..++.+|.-.|++--+..|..+..+.-.+.|+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLt----QLA~awv~la~g---gek~qdAfyifeE~s~k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLT----QLAQAWVKLATG---GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHH----HHHHHHHHHhcc---chhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence 34556666666666666666654443110 012233333322 35688888888888877777888888999999
Q ss_pred hhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 191 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 191 ~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
..+++|++|...++.||.-++++++...++-.+-..++.
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999888887666654
No 243
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.24 E-value=0.067 Score=53.30 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=71.3
Q ss_pred cccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch-------hhhhhcceeeeccc------c
Q 007725 112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD-------ECIKVGSEVLAYDA------K 178 (591)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~-------eAi~~~~~AL~ldP------~ 178 (591)
.+.....+++|++.|..||-...-.. +-....+.+++.+|-+|+.+++.+ .|++.|.++++... +
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~--~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKK--EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 56677888999999998887532111 111134567888999999998854 45555655554332 3
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
....+|.+|..+.++|++++|+.+|.+.+..--
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999986543
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.00 E-value=0.062 Score=58.94 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=79.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-cccchH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVK 181 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-dP~~~~ 181 (591)
+.....++.++.+.|+.++||+.|+..++..|.... ..++.|+-.||+.+++|.++...+.+-=++ -|..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence 445567889999999999999999999988776432 347889999999999999998877665333 266777
Q ss_pred HHHHhccchhh-hhh---------------HHHHhhhcccccccCCCCChH
Q 007725 182 ALYRRGQAYKD-IGR---------------LEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 182 a~~~rg~al~~-lg~---------------~eeAl~~lekAl~l~P~~~~a 216 (591)
..|..+....+ .++ -..|++.+++|++.+|+-++.
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 77777665433 222 134778899999999986543
No 245
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.88 E-value=0.039 Score=66.01 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=82.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-----
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----- 177 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP----- 177 (591)
+..+..+|..++..|++++|..++.+++.+....... .......++.+++.+++..|++++|...+.+++.+..
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 4466778889999999999999999999875442110 0011122355788889999999999999999987532
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
....++..+|.++...|++++|...+++++.+..
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2466777899999999999999999999977643
No 246
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.87 E-value=0.084 Score=52.64 Aligned_cols=61 Identities=18% Similarity=0.085 Sum_probs=55.1
Q ss_pred ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
..+.+.++++.|.+.|.+++.+.|.+.. .|..+|....+.|+++.|.+.|+++|++||.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~---------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAA---------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhh---------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3467889999999999999999998755 799999999999999999999999999999763
No 247
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.75 E-value=0.073 Score=51.41 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=76.4
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc--
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-- 177 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP-- 177 (591)
...-..+..+|+.|++.|++++|+++|.++..+...... .+..++++-.+.+..++|..+.....++-.+--
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~------~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH------KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 334578899999999999999999999999887544332 234667777777888999998888888755422
Q ss_pred cc----hHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 178 KN----VKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 178 ~~----~~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
.+ .+.....|.++...++|.+|...|-.++.
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22 22344467777888999999988877653
No 248
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.75 E-value=0.096 Score=63.21 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=91.3
Q ss_pred HHHHHHHhhhhcccc--------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee
Q 007725 84 EIATMRARIDAQMNY--------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC 155 (591)
Q Consensus 84 e~~~a~~~~~~~l~~--------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~ 155 (591)
+++.|.+-+++++.. .++..-++.|+-|.|- .-+.-.+.|++|.+++... ..|..|+-.
T Consensus 1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd~~----------~V~~~L~~i 1539 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYCDAY----------TVHLKLLGI 1539 (1710)
T ss_pred hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcchH----------HHHHHHHHH
Confidence 455555555555441 2223344444444433 3344556677777764332 256777888
Q ss_pred eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhhhccC
Q 007725 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~l~~~~~ 232 (591)
|.+..+|++|.+.++.-++.--...+.|...+..+++..+-++|...+.+|++.-|. |.++......++++.++.+.
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence 888888888888888877766677778888888888888888888888888888887 66677777777777766554
No 249
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.72 E-value=0.12 Score=62.41 Aligned_cols=131 Identities=12% Similarity=0.015 Sum_probs=107.2
Q ss_pred HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (591)
Q Consensus 88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~ 167 (591)
.+.=++++.+|.. .-..+..+...|-+.++|++|.++|+.-++...... ..|.-.+..+++..+-++|..
T Consensus 1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~---------~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR---------KVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh---------hHHHHHHHHHhcccHHHHHHH
Confidence 3333444444433 244566677789999999999999999998766433 378999999999999999999
Q ss_pred hcceeeecccc--chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 168 VGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 168 ~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
.+.+||+.-|. +.+....-+..-++.|+-+.+...|+..+.-+|...++|..+.+.+.+.+
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence 99999999998 88888889999999999999999999999999999999998877665543
No 250
>PLN03077 Protein ECB2; Provisional
Probab=90.48 E-value=0.097 Score=62.57 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=68.0
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeeccccceeeecccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
.++.|...++.. ......|..+...|.+.|++++|++.|++.++. .|+.. .|..+-.+|.+.|.
T Consensus 539 ~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----------T~~~ll~a~~~~g~ 604 (857)
T PLN03077 539 RMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----------TFISLLCACSRSGM 604 (857)
T ss_pred CHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----------cHHHHHHHHhhcCh
Confidence 444555555443 344556777777788888888888888876652 23321 34444445566677
Q ss_pred chhhhhhcceeeec---cccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 162 YDECIKVGSEVLAY---DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 162 y~eAi~~~~~AL~l---dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
+++|.+.|+...+. .| +...|..+..+|.+.|++++|.+.+++. .+.|+
T Consensus 605 v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 77777777666522 23 3355666666777777777777776654 24444
No 251
>PLN03218 maturation of RBCL 1; Provisional
Probab=90.31 E-value=0.11 Score=63.48 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=67.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeeccccceeeeccccchhhhhhcceeee----cc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----YD 176 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~----ld 176 (591)
...+..+-..|.+.|++++|++.|.+.... .|+ ...|..+-.+|.+.|++++|.+.+.+... +.
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD----------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD----------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 445555666677777777777777766442 122 12466666666777777777777766643 34
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccC-CCCChHHHHHhHHHHH
Q 007725 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEI 226 (591)
Q Consensus 177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~-P~~~~a~~~L~~a~~~ 226 (591)
|+ ...|..+-.+|.+.|++++|++.|+...+.. +.+...+..+-....+
T Consensus 577 PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 577 PD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 43 3455556666777777777777777666554 2233444444443333
No 252
>PRK10941 hypothetical protein; Provisional
Probab=90.30 E-value=0.073 Score=54.87 Aligned_cols=77 Identities=13% Similarity=-0.068 Sum_probs=66.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
...+.++-..|.+.++|+.|+.+.+..+.+.|++|. -+.-||.+|.+++.+..|+.+++.-|+..|+.+.+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 355667777899999999999999999999999975 46669999999999999999999999999999887
Q ss_pred HHHhcc
Q 007725 183 LYRRGQ 188 (591)
Q Consensus 183 ~~~rg~ 188 (591)
..-+-.
T Consensus 252 ~~ik~q 257 (269)
T PRK10941 252 EMIRAQ 257 (269)
T ss_pred HHHHHH
Confidence 654433
No 253
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.10 E-value=0.11 Score=53.93 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=89.0
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccc-cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYS-EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~-~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
++.+..-+.++.+...-....+...+..-++ .++.+.|...|+.+++..|.++. +|+.....+.+.++.+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------~~~~Y~~~l~~~~d~~ 87 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------FWLEYLDFLIKLNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHTT-HH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhCcHH
Confidence 5556655666555444455666666766455 67777799999999999998876 5666667888999999
Q ss_pred hhhhhcceeeeccccch---HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725 164 ECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~---~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~ 221 (591)
.|...|++++..-|... ..|-....--...|+++......+++.++-|.+..+.....
T Consensus 88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 88 NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998766544 34444455556778899999999999988888665544443
No 254
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.05 E-value=0.077 Score=57.87 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=71.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhh-ccccccc--------cccceeeeeeccccceeeeccccchhhhhhccee
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGIHS--------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~-l~p~~~~--------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A 172 (591)
....+.++|..+|+.|.|.-++.+|.+||+ .+..... .-...-..-+.||.|..|+..|+...|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 345678999999999999999999999996 2111000 0011112336799999999999999999999999
Q ss_pred eeccccchHHHHHhccchhh
Q 007725 173 LAYDAKNVKALYRRGQAYKD 192 (591)
Q Consensus 173 L~ldP~~~~a~~~rg~al~~ 192 (591)
...--.++..|.|++.|...
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999998763
No 255
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.03 E-value=0.21 Score=54.53 Aligned_cols=115 Identities=14% Similarity=0.037 Sum_probs=94.7
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhc
Q 007725 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (591)
Q Consensus 90 ~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~ 169 (591)
.+++..++.+.-....+...|.--..++++..|...|++||..+-.+ +.+|+..+.|-++.+....|...+
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------itLWlkYae~Emknk~vNhARNv~ 130 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------ITLWLKYAEFEMKNKQVNHARNVW 130 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------chHHHHHHHHHHhhhhHhHHHHHH
Confidence 44555555555566677777777788899999999999999986554 558999999999999999999999
Q ss_pred ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 170 ~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
++|+.+-|.--+.||..-..--.+|+..-|...|++=+...|+.
T Consensus 131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e 174 (677)
T KOG1915|consen 131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE 174 (677)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence 99999999999999888777778888888888888888888864
No 256
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.061 Score=54.98 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=67.9
Q ss_pred eeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHH
Q 007725 143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217 (591)
Q Consensus 143 ~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~ 217 (591)
+++.....|+-..|.+.++++.|..+.++.|.++|.++..+--||.+|.++|.+.-|+.+++..++..|+++.+.
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 344556778888999999999999999999999999999999999999999999999999999999999987643
No 257
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=0.15 Score=51.81 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=71.8
Q ss_pred ChHHHHHHHHhhhhccc------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccce
Q 007725 81 SPEEIATMRARIDAQMN------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS 154 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~ 154 (591)
+.++++.+...++...+ ..-.....+++.+-.+....+|.+|...|.+.+..++.++. +-+|.+.
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~---------a~NnKAL 294 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV---------ANNNKAL 294 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh---------hhchHHH
Confidence 44556666655553322 22234556788888899999999999999999999888865 6788999
Q ss_pred eeeccccchhhhhhcceeeeccccc
Q 007725 155 CYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 155 ~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
|++-+|+..+|++..+.++.++|..
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999964
No 258
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.11 E-value=0.12 Score=45.96 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=71.7
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-----------cchhhhhhcceeeeccc
Q 007725 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-----------QYDECIKVGSEVLAYDA 177 (591)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-----------~y~eAi~~~~~AL~ldP 177 (591)
++..++.+|++-+|++.-+..+...+++... +.++.--|.+++++. -...+++.|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 3456889999999999999999877665430 112233344443322 23468899999999999
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
..+..+|.+|.=+-....|++++.-.+++|.+.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999998888888999999998888764
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.53 E-value=0.11 Score=54.86 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=97.6
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhc---ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQG---NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~G---n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
+.+.+.+.+.+.+....+.-..+..+| .++...|+|++++.+---.|...... +....+..+|.|++..|.++-
T Consensus 21 ~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~---~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 21 QTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL---EDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 445566655555554444333344333 46778889988876643333322211 111223447899999999999
Q ss_pred cchhhhhhcceeeeccccc-----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhh
Q 007725 161 QYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMK 229 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~-----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~------~a~~~L~~a~~~l~~ 229 (591)
+|.+++.++..-+.+-... ..++..+|.++..++.|+.+++.|++|+.+.-++. .+.-.|+...-.+++
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 9999999998888764322 35677799999999999999999999998865443 245556666666666
Q ss_pred ccCC
Q 007725 230 EDGH 233 (591)
Q Consensus 230 ~~~a 233 (591)
+.++
T Consensus 178 ~~Ka 181 (518)
T KOG1941|consen 178 YEKA 181 (518)
T ss_pred hhHH
Confidence 6554
No 260
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.40 E-value=0.36 Score=33.87 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 134 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p 134 (591)
+..+.++|..|...|+|++|+.+|.+++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 45788999999999999999999999998643
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.17 E-value=0.24 Score=51.97 Aligned_cols=112 Identities=10% Similarity=-0.027 Sum_probs=88.4
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeeccccceeeeccccchhhhhh
Q 007725 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 168 (591)
Q Consensus 90 ~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~ 168 (591)
-+.++-++..|....+++.--..+|..|+...-...+++.|-. +++.|. ..++.--++.|+...|-|++|.+.
T Consensus 124 ~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~------~sYv~GmyaFgL~E~g~y~dAEk~ 197 (491)
T KOG2610|consen 124 IEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC------YSYVHGMYAFGLEECGIYDDAEKQ 197 (491)
T ss_pred HHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH------HHHHHHHHHhhHHHhccchhHHHH
Confidence 3445556667777777777777888888888888888888766 555542 122233378899999999999999
Q ss_pred cceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 169 ~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
.+++++|++.+.=+.+.++.++.-.+++.++++...+--
T Consensus 198 A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 198 ADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 999999999999999999999999999999998877653
No 262
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.32 E-value=0.25 Score=34.71 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=23.5
Q ss_pred hHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
+.++.++|.+|...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888888889999998888888754
No 263
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.11 E-value=0.29 Score=53.75 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=78.3
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhh-HHH
Q 007725 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEE 198 (591)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~-~ee 198 (591)
..-+..|++|+...+.|+. +|.+......+.+.|.+....|.++|.++|+++..|..-+.-.++.+. .+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~---------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVK---------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 3445679999999888765 666665555566669999999999999999999999999998888777 999
Q ss_pred HhhhcccccccCCCCChHHHHHhH
Q 007725 199 AVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 199 Al~~lekAl~l~P~~~~a~~~L~~ 222 (591)
|...+.++|..+|+.+.+|..+-+
T Consensus 159 aRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHH
Confidence 999999999999999988775544
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.84 E-value=0.25 Score=45.43 Aligned_cols=74 Identities=23% Similarity=0.188 Sum_probs=59.1
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhhhc
Q 007725 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGA 250 (591)
Q Consensus 177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e~~e~~~~ 250 (591)
.....++..++.++...|++++|+..+++++.++|-+..++..+-.+....++...+...|........++...
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 34566777888899999999999999999999999999999999999999999888877777776655555443
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.69 E-value=0.41 Score=44.09 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=56.4
Q ss_pred HHHHHHHhccccccccc---chhHHHHHHHhhh-ccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725 102 AAKMLKKQGNELYSEGR---FSNALQKYLLAKK-NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~---y~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP 177 (591)
..+..++++.++.+..+ -.+.|..++..+. -.|.. ...|.+.++..|+++++|+.++.+++..|+.+|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--------RRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 44566777777766544 4667888888876 22222 234778899999999999999999999999999
Q ss_pred cchHHHH
Q 007725 178 KNVKALY 184 (591)
Q Consensus 178 ~~~~a~~ 184 (591)
+|..+.-
T Consensus 103 ~n~Qa~~ 109 (149)
T KOG3364|consen 103 NNRQALE 109 (149)
T ss_pred CcHHHHH
Confidence 9988753
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.64 E-value=1.5 Score=44.62 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=87.5
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee--------ccccchhhhhhc
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL--------KTKQYDECIKVG 169 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~--------~lg~y~eAi~~~ 169 (591)
+.+-.-++...++-.+++.++|++|+...++-+.+.|.+++. ..+++-+|.+++ ....-.+|+..+
T Consensus 66 ~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f 139 (254)
T COG4105 66 FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAF 139 (254)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh------hHHHHHHHHHHhccCCccccCHHHHHHHHHHH
Confidence 344456788889999999999999999999999999999862 334444454443 334456788888
Q ss_pred ceeeeccccch-----H----------HH--HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 170 SEVLAYDAKNV-----K----------AL--YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 170 ~~AL~ldP~~~-----~----------a~--~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
...|..-|+.. + +. ...|.-|.+.|.|..|+..++..++--|+...+...|....+.
T Consensus 140 ~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea 213 (254)
T COG4105 140 KELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEA 213 (254)
T ss_pred HHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 89888877541 1 11 2246667788889999999999998877766555544444333
No 267
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.91 E-value=1.1 Score=49.24 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=75.3
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
-++.+.-.+....++.+...|.+..-.||-.+|.+.. +...-..-+++++++.|...|++-|+..|.+..
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl----------Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL----------FKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH----------HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 4556666666777788888888888888888777642 222223345678888888888888888888888
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
+|...|..-..+|+.+.|...|+-|+...
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 88888888888888888888888887653
No 268
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=0.62 Score=47.75 Aligned_cols=79 Identities=14% Similarity=-0.033 Sum_probs=66.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
....+.++=+.+...++++.|..+-.+.+.++|.+|. -+.-+|.+|.++|.+.-|+++++..++..|+.+.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY---------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3445555666788999999999999999999999985 3667999999999999999999999999999888
Q ss_pred HHHHhccc
Q 007725 182 ALYRRGQA 189 (591)
Q Consensus 182 a~~~rg~a 189 (591)
+-+-+...
T Consensus 251 a~~ir~~l 258 (269)
T COG2912 251 AEMIRAQL 258 (269)
T ss_pred HHHHHHHH
Confidence 76655543
No 269
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=82.16 E-value=2.1 Score=30.73 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=26.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCHHHHhhhhhh
Q 007725 483 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQ 515 (591)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~ 515 (591)
.+..+|+||.+++++..|+.| |+.+..|-++
T Consensus 3 ~~~~~l~~P~~~~~l~~~~~n--P~~~~~~~~~ 33 (41)
T smart00727 3 EMALRLQNPQVQSLLQDMQQN--PDMLAQMLQE 33 (41)
T ss_pred HHHHHHcCHHHHHHHHHHHHC--HHHHHHHHHh
Confidence 577888999999999999999 9988887764
No 270
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=81.62 E-value=2.8 Score=35.50 Aligned_cols=43 Identities=14% Similarity=0.425 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhcCCHHHHhhhhhhhccccChhhHHHHHHHhcc
Q 007725 492 AMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSS 534 (591)
Q Consensus 492 ~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~~~~~~~~~~~ 534 (591)
=++++...=++++|++.+-.-|+|+|+.++++||++-.+-|+.
T Consensus 3 i~qqiVn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 3 IIQQIVNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 3567777779999999999999999999999999999998874
No 271
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.35 E-value=0.51 Score=33.75 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=25.6
Q ss_pred HHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
..|..+|.+-...++|+.|+.+|++|+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56788999999999999999999999865
No 272
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.05 E-value=0.99 Score=29.10 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=20.7
Q ss_pred HHHHHhccchhhhhhHHHHhhhccc
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSN 205 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lek 205 (591)
.+++.+|.+|...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678889999999999999887763
No 273
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.84 E-value=0.3 Score=49.00 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=63.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-----
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----- 178 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----- 178 (591)
+.+..-||.|--..+|..|=..|.++-.+.-... .......+|.--+.||.+. +..+|+.+++++|+|--+
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~---skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG---SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444445555555555555544321110 0111234566667777554 888899999988887553
Q ss_pred -chHHHHHhccchh-hhhhHHHHhhhcccccccCCC
Q 007725 179 -NVKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 179 -~~~a~~~rg~al~-~lg~~eeAl~~lekAl~l~P~ 212 (591)
-++.+.-+|..|- .+.+++.||.+|+.|.+.-..
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 2445667788775 568999999999998776443
No 274
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.77 E-value=0.18 Score=43.35 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=40.1
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~ 192 (591)
..+.++|.+|++.+.+.+.......... . .-....++.+++.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~-----------~-----------------------~~~~~~all~lA~~~~~ 53 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSS-----------S-----------------------NSGLAYALLNLAELHRR 53 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccch-----------h-----------------------hHHHHHHHHHHHHHHHH
Confidence 4578899999999888887644332100 0 11233445566666666
Q ss_pred hhhHHHHhhhcccccccCCC
Q 007725 193 IGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 193 lg~~eeAl~~lekAl~l~P~ 212 (591)
.|++++|+..+++|+.+...
T Consensus 54 ~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 54 FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 66666666666666666443
No 275
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.69 E-value=0.87 Score=50.42 Aligned_cols=77 Identities=17% Similarity=0.020 Sum_probs=66.5
Q ss_pred cccchhhhhhcceeeeccccchHHHHHhccchhhhh---hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG 235 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg---~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~ 235 (591)
...+..+|.+|.+++..-|.....|.+|+.++.+.+ +.-.|+.++..|+.++|-..+++..|.++...+++..++..
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 355677999999999999999999999999998754 45569999999999999999999999999999988776543
No 276
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=78.62 E-value=0.62 Score=55.82 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=82.5
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-------ccchhhhhhcceeeeccccchHH
Q 007725 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-------KQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-------g~y~eAi~~~~~AL~ldP~~~~a 182 (591)
.+++.....|+.|+..|++.-.-.|+..+ +++ +.+..|..++.. ..|.+|+..|++.. -.|.-+--
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 554 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKE--GYE----AQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLE 554 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCccc--chH----HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchH
Confidence 33456788999999999999888887643 111 334455555432 25666776666532 35677778
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
|.-.+.+|.++|+|+|-+++|.-|++.-|+++++-.....+-+++.+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999877666666555543
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.40 E-value=0.72 Score=47.67 Aligned_cols=112 Identities=17% Similarity=0.097 Sum_probs=81.6
Q ss_pred cchHHHHHHHhcccccccc-cchhHHHHHHHhhhcccc----cc-ccccceeeeeeccccceeeeccccchhhhhhccee
Q 007725 99 EFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQG----IH-SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~----~~-~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A 172 (591)
....+..+++.|..++..+ +|++|+..+++++++.+. .. ..+..+++..++..++.+|+..+.++...+ |.++
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~ 109 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHH
Confidence 3445778999999999999 999999999999998533 11 234556778888999999999887754333 4444
Q ss_pred ee----ccccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 173 LA----YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 173 L~----ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
++ -.|+.+..++-.=.++.+.++.+++.+.+.+.+.--+
T Consensus 110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 33 3477777775555555557888888888888876544
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.84 E-value=0.99 Score=45.64 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=76.9
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee----
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---- 174 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~---- 174 (591)
.++.+..-..++....+.-+.++|++.|++++.+...+.. ...-..+|...+.+|.++.+|.+|-..+.+-..
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr---~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR---DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 4555555666666778888999999999999998766542 011122566788899999999998766655432
Q ss_pred cc--ccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 175 YD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 175 ld--P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
.+ ++..+++...-.+|....+|..|..+|+....+.
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 22 3444555555566677779999999999987764
No 279
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.61 E-value=0.41 Score=41.01 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=41.1
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
.+..+++++..+|++.. +.+.++.+|...|+|++|++.+-++++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~---------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD---------ARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HH---------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 46678899999999876 78899999999999999999999999999876
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.11 E-value=1 Score=47.18 Aligned_cols=126 Identities=16% Similarity=0.069 Sum_probs=92.5
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--- 175 (591)
....+..+...+..+.+.|+|..|.....++..+.+.... ....+.+-.+..+...|+..+|+..+...+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-----~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-----LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 4456778888999999999999999999998886532211 01223444566666777777777766555541
Q ss_pred -------------------------------cccchHHHHHhccchhhh------hhHHHHhhhcccccccCCCCChHHH
Q 007725 176 -------------------------------DAKNVKALYRRGQAYKDI------GRLEEAVSDLSNAHEVSPDDGTIAD 218 (591)
Q Consensus 176 -------------------------------dP~~~~a~~~rg~al~~l------g~~eeAl~~lekAl~l~P~~~~a~~ 218 (591)
....+++++.+|.-...+ +.+++++..|+++++++|....++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 012356777788877777 8899999999999999999999999
Q ss_pred HHhHHHHHhhh
Q 007725 219 VLRDAKEILMK 229 (591)
Q Consensus 219 ~L~~a~~~l~~ 229 (591)
.++.....+-.
T Consensus 297 ~~a~~~~~~~~ 307 (352)
T PF02259_consen 297 SWALFNDKLLE 307 (352)
T ss_pred HHHHHHHHHHH
Confidence 88888776643
No 281
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=76.98 E-value=3.6 Score=32.94 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=29.2
Q ss_pred HHhhc--CCHHHHhhhhhhhccccChhhHHHHHHHhcc
Q 007725 499 SMVKN--MSPEMMANMSEQFGIKLSREDTEKFQQTMSS 534 (591)
Q Consensus 499 ~mmk~--m~p~~~~~m~~~~g~~~~~~~~~~~~~~~~~ 534 (591)
.+.+| ++++|+..|..|+|.|.|..+-.+..++|++
T Consensus 25 ~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 25 QLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred HHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 44455 6679999999999999999988887777754
No 282
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.72 E-value=1.1 Score=45.41 Aligned_cols=62 Identities=11% Similarity=-0.083 Sum_probs=52.9
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
|+.+|.+|+.+.|++...|+.+|..+...|++-+|+=+|-|++...-.++.+..+|..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998776678888888887666
No 283
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=76.06 E-value=1.9 Score=48.49 Aligned_cols=109 Identities=15% Similarity=0.007 Sum_probs=85.3
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh-hhcceeeeccccchHHHHHh-
Q 007725 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI-KVGSEVLAYDAKNVKALYRR- 186 (591)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi-~~~~~AL~ldP~~~~a~~~r- 186 (591)
+...+...++...++.....++..+|... .++.|++.+....|....++ ..+..+..+.|++......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENC---------PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccc---------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence 45566777888888888999999877764 48899998887777655555 45555888999998888777
Q ss_pred -----ccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 187 -----GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 187 -----g~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+..+..+++.+++..+++++..+.|.++.+...+-...+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 8888899999999999999999999997666555554333
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.98 E-value=0.39 Score=50.38 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=74.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhh-cccccc------------------------ccccceeeeeeccccceee
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGIH------------------------SSEGRTLLLACSLNSMSCY 156 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~-l~p~~~------------------------~~e~~~l~~~~~~Nla~~y 156 (591)
.+......+..+...|+..+|+......+. ...... ..+.......+++-+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 455666677778888999999999888887 222110 0111122333444455544
Q ss_pred ecc------ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHH-----------------HHhhhcccccccCCC
Q 007725 157 LKT------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE-----------------EAVSDLSNAHEVSPD 212 (591)
Q Consensus 157 ~~l------g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~e-----------------eAl~~lekAl~l~P~ 212 (591)
... +.+++++..|.++++++|.+.++|+..|..+..+=+.+ .|+..|-+|+.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 455 77888999999999999999999999998876653322 366666666666655
No 285
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.85 E-value=0.55 Score=39.16 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~ 169 (591)
+......|..+|...+..+|+..++++|+..++.+. ...++..+..+|...|+|++.+++.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~------rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED------RFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999999999999997666432 2223344455555666666655544
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.50 E-value=1.9 Score=40.92 Aligned_cols=78 Identities=14% Similarity=0.007 Sum_probs=67.1
Q ss_pred cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 152 la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+..+-++.++.+++...+...--+.|..+..-.--|..++..|+|.+|+..|+....-.|..+.+...+..|.+.+++
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334445566888888888887788999999999999999999999999999999999899999999999999887765
No 287
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=75.01 E-value=1.2 Score=49.78 Aligned_cols=93 Identities=9% Similarity=-0.100 Sum_probs=73.2
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc----chHHHHHhccchh
Q 007725 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYK 191 (591)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----~~~a~~~rg~al~ 191 (591)
......|.+...+.....|+..- .++..|.+++..|+.++|++.+++++..... ..-.+|-++.++.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~l---------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSAL---------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 44556677778888887776543 5788999999999999999999999864433 3447889999999
Q ss_pred hhhhHHHHhhhcccccccCCCCChHH
Q 007725 192 DIGRLEEAVSDLSNAHEVSPDDGTIA 217 (591)
Q Consensus 192 ~lg~~eeAl~~lekAl~l~P~~~~a~ 217 (591)
-+.+|++|..++.+.++.+.-...++
T Consensus 317 ~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred HHchHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999988655433333
No 288
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.75 E-value=1 Score=48.39 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=75.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc------
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 176 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld------ 176 (591)
-.++..+|.-|..-|+++.|+++|.++-.++..-.. .+..|.|+-.+-..+++|-....+..+|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 456788899999999999999999998777554332 23356777777777888887777776665431
Q ss_pred --ccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 177 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 177 --P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
--.++..+.-|.++..+++|..|..++-.+..
T Consensus 224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 12356788889999999999999998876643
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.38 E-value=1.5 Score=47.95 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=58.5
Q ss_pred ceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC----CChHHHHHhHHHHHhh
Q 007725 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD----DGTIADVLRDAKEILM 228 (591)
Q Consensus 153 a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~----~~~a~~~L~~a~~~l~ 228 (591)
|..++..|+|.+|.-++.=..+++| ++.+|--+|.|++..++|+||..++... -|+ +..+...+..|.+.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhhh
Confidence 3445678999999999999999999 9999999999999999999999999855 333 3456666666666653
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.78 E-value=1.3 Score=50.57 Aligned_cols=103 Identities=19% Similarity=0.117 Sum_probs=75.5
Q ss_pred HHHhccccccc----c-cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc---cchhhhhhcceeeeccc
Q 007725 106 LKKQGNELYSE----G-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYDA 177 (591)
Q Consensus 106 lk~~Gn~~~~~----g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg---~y~eAi~~~~~AL~ldP 177 (591)
...+|..|++. . ++..|+.+|.++-.+...+ +.+++|.||.... ++..|.++|..|. .-
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa--~~ 357 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------AQYLLGVLYETGTKERDYRRAFEYYSLAA--KA 357 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHcCCccccHHHHHHHHHHHH--Hc
Confidence 44555555553 2 7888999999998875444 5778888887665 5788999998886 34
Q ss_pred cchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 178 KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 178 ~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
.+..++++++.||.. .-+.+.|+.+++++.+.. ++.+...++..
T Consensus 358 G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 358 GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 788999999998863 346888999999998887 34444444444
No 291
>PRK00523 hypothetical protein; Provisional
Probab=72.62 E-value=7.9 Score=31.65 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=26.8
Q ss_pred CCHHHHhhhhhhhccccChhhHHHHHHHhcc
Q 007725 504 MSPEMMANMSEQFGIKLSREDTEKFQQTMSS 534 (591)
Q Consensus 504 m~p~~~~~m~~~~g~~~~~~~~~~~~~~~~~ 534 (591)
.+++|+..|..|+|.|.|..+-.+.-++|++
T Consensus 40 ine~mir~M~~QMGqKPSekki~Q~m~~mk~ 70 (72)
T PRK00523 40 ITENMIRAMYMQMGRKPSESQIKQVMRSVKN 70 (72)
T ss_pred CCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 7899999999999999999888777777643
No 292
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.74 E-value=4.9 Score=40.52 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=62.3
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee-------------ecccc-chhh----hhhcceeee
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-------------LKTKQ-YDEC----IKVGSEVLA 174 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y-------------~~lg~-y~eA----i~~~~~AL~ 174 (591)
+|.-|+|+.|++....||+..-.-|+ .+++-... +..|+ ++-. ....+.-..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd----------~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~d 162 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPD----------QFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWD 162 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCc----------cccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCC
Confidence 47899999999999999998766664 11111111 11111 1110 000100011
Q ss_pred c-cccchHHHHHhccch---------hhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 175 Y-DAKNVKALYRRGQAY---------KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 175 l-dP~~~~a~~~rg~al---------~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
+ |.-.++.|-..|.++ ...++...|+.+|++|+.++|+- -+...+..+...++
T Consensus 163 mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 163 MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 1 122355566667766 35678899999999999999763 35666677666664
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.78 E-value=1 Score=38.63 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=10.4
Q ss_pred ccccchhhhhhcceeeec
Q 007725 158 KTKQYDECIKVGSEVLAY 175 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~l 175 (591)
+.++|.+|++.+.+.+..
T Consensus 10 ~~~dy~~A~d~L~~~fD~ 27 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDY 27 (94)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 456666666655555543
No 294
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=67.86 E-value=3.5 Score=44.37 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=93.0
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi 166 (591)
.+........+..++.+.....-+..+|+.|+..++-...+.+.+..|. |. ++.+|....--+.++
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~-------------ia~lY~~ar~gdta~ 312 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PD-------------IALLYVRARSGDTAL 312 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hH-------------HHHHHHHhcCCCcHH
Confidence 3445555566667777777777788899999999999999999987664 32 444555554444555
Q ss_pred hhccee---eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 167 KVGSEV---LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 167 ~~~~~A---L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
.-+.++ -.+.|+|.+..+.++.+-+.-|+|..|....+.+...+|.. .++-.+..+++.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeA 374 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEA 374 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhh
Confidence 444444 34679999999999999999999999999999999999874 356666666554
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.79 E-value=2.2 Score=40.48 Aligned_cols=86 Identities=9% Similarity=-0.101 Sum_probs=65.7
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+..+..........++.+++...+...-.+.|..+. +-.--+..|+..|+|.+|+..++.+.+-.|..+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e---------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE---------LDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 4556777777777888888888888877777777765 4455677788889999999999998888887776
Q ss_pred HHHHhccchhhhhhH
Q 007725 182 ALYRRGQAYKDIGRL 196 (591)
Q Consensus 182 a~~~rg~al~~lg~~ 196 (591)
+---++.|+..+++.
T Consensus 80 ~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 80 AKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHHHcCCh
Confidence 666677777777663
No 296
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=67.22 E-value=3 Score=46.97 Aligned_cols=92 Identities=20% Similarity=0.097 Sum_probs=70.9
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
++..|...+.+++.++. +...+. +...+..+++...++-..+.++..+|.+..++.+++.++...|....++.
T Consensus 50 ~~~a~~~~~~~~~~~~~------llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 50 AIYALLLGIAINDVNPE------LLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred HHHHHHccCccCCCCHH------HHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHH
Confidence 66667777777676664 112222 67777788888888888999999999999999999999988887666665
Q ss_pred hccc-ccccCCCCChHHHHH
Q 007725 202 DLSN-AHEVSPDDGTIADVL 220 (591)
Q Consensus 202 ~lek-Al~l~P~~~~a~~~L 220 (591)
.+.. +....|++..+...+
T Consensus 123 ~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 123 DISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHHHHhcCcchHHHHhhH
Confidence 5554 999999998776666
No 297
>COG5346 Predicted membrane protein [Function unknown]
Probab=67.21 E-value=3.9 Score=36.74 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHhccCCccchhhHHHhHHHHhhhccccccccccccCC---CchHHHHHHHHHHHHHhhhcc
Q 007725 529 QQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGK---PGMILAICMLILAVILHRLGF 588 (591)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~~~~~l~~a~~l~~~~~ 588 (591)
.++-.|+=|.+++|+|..|.+-|.-......----+..+ .+-+-.||.||.+|-|-|.+|
T Consensus 44 l~qYnsI~pnt~~rimaMAekEQahrH~~~~k~~~~q~r~~~~~~~tril~liFgi~LVvsi~ 106 (136)
T COG5346 44 LSQYNSIYPNTLQRIMAMAEKEQAHRHAIDLKNLKIQRRGQLYAKLTRILLLIFGIFLVVSIF 106 (136)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999987532222111111222 234455666666665555555
No 298
>PRK01844 hypothetical protein; Provisional
Probab=66.80 E-value=12 Score=30.58 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.5
Q ss_pred HHhhc--CCHHHHhhhhhhhccccChhhHHHHHHHhc
Q 007725 499 SMVKN--MSPEMMANMSEQFGIKLSREDTEKFQQTMS 533 (591)
Q Consensus 499 ~mmk~--m~p~~~~~m~~~~g~~~~~~~~~~~~~~~~ 533 (591)
.+-+| .+++|+..|..|+|.|.|..+-.+.-++|+
T Consensus 32 ~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 32 YLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 34444 789999999999999999988777776664
No 299
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.68 E-value=6.1 Score=41.08 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=34.2
Q ss_pred cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccc
Q 007725 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 205 (591)
Q Consensus 152 la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lek 205 (591)
.+..|...|.|.+|++.|++++.+||-+-..+.-+=..|..+|+--++++.|++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 455556666666666666666666666666666666666666665555555544
No 300
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=64.84 E-value=0.9 Score=47.34 Aligned_cols=89 Identities=12% Similarity=0.027 Sum_probs=70.7
Q ss_pred HHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHH-hccchhhhhhHHHHhhhcc
Q 007725 126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR-RGQAYKDIGRLEEAVSDLS 204 (591)
Q Consensus 126 Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~-rg~al~~lg~~eeAl~~le 204 (591)
|.++-...+.++. +|.-.+....+.+-|.+-...|.+++..+|.|++.|.. .+.-|...++++.+...+.
T Consensus 96 ~~R~tnkff~D~k---------~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~ 166 (435)
T COG5191 96 LYRSTNKFFNDPK---------IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL 166 (435)
T ss_pred eehhhhcCCCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH
Confidence 5555555666665 45555555567788999999999999999999999877 4556778899999999999
Q ss_pred cccccCCCCChHHHHHhHH
Q 007725 205 NAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 205 kAl~l~P~~~~a~~~L~~a 223 (591)
+++.++|+.+.+|...-+.
T Consensus 167 ~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 167 KGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred hhhccCCCCchHHHHHHHH
Confidence 9999999999888765443
No 301
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.54 E-value=3.4 Score=42.46 Aligned_cols=108 Identities=19% Similarity=0.067 Sum_probs=74.8
Q ss_pred HHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-------cchhhhhhcc
Q 007725 102 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-------QYDECIKVGS 170 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-------~y~eAi~~~~ 170 (591)
.+...+.+|..+.. ..++.+|...|.+|....-... ..+.++++.+|.... +...|+..|.
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 34456667776655 5599999999999988633321 112566777776542 2336788887
Q ss_pred eeeeccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725 171 EVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (591)
Q Consensus 171 ~AL~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~ 221 (591)
++-... +..+.+++|.+|.. ..++.+|+.+|++|.+... ......++
T Consensus 180 ~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 180 KAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 776543 88889999988753 4479999999999998765 45555555
No 302
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=63.06 E-value=4.9 Score=43.67 Aligned_cols=76 Identities=8% Similarity=-0.008 Sum_probs=54.9
Q ss_pred ccccchhhhhhcceeeeccc-cch-----H-----HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 158 KTKQYDECIKVGSEVLAYDA-KNV-----K-----ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP-~~~-----~-----a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
..|+|..|+++|.+.-.+.- ..+ . .--.+..||.++++.+.|+....+.+.++|.+.--+.+-+.+.+.
T Consensus 195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~ 274 (569)
T PF15015_consen 195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR 274 (569)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence 34677777777777655432 111 1 123478899999999999999999999999988777777777777
Q ss_pred hhhccCC
Q 007725 227 LMKEDGH 233 (591)
Q Consensus 227 l~~~~~a 233 (591)
|.++.++
T Consensus 275 LeRy~eA 281 (569)
T PF15015_consen 275 LERYSEA 281 (569)
T ss_pred HHHHHHH
Confidence 7766543
No 303
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.64 E-value=3.8 Score=28.87 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHhccchhhhhhHHHHhhh--cccccccCCCC
Q 007725 181 KALYRRGQAYKDIGRLEEAVSD--LSNAHEVSPDD 213 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~--lekAl~l~P~~ 213 (591)
+.++.+|..+...|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5677788888899999999998 44777676653
No 304
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=61.07 E-value=3 Score=47.40 Aligned_cols=121 Identities=11% Similarity=0.076 Sum_probs=82.1
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
++..++-|++.+...+..+....|.|..+-...-|+++-+.|++.|.+.+.-.. -.+...|+-....-+...+.+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v----~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV----YDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH----HHHHHHHHHHHHHHhcCCCHHH
Confidence 445567777777778888888888888888888889999999999988764221 0122234444444445567888
Q ss_pred hhhhcceeeeccc-cchHHHHHhccch-hhhhhHHHHhhhccccccc
Q 007725 165 CIKVGSEVLAYDA-KNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 165 Ai~~~~~AL~ldP-~~~~a~~~rg~al-~~lg~~eeAl~~lekAl~l 209 (591)
|...|++||+..| .+++.+|.+-..+ -+-|--..|+..|++|..-
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 8999999998776 4556555443322 3456667788888887544
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.86 E-value=5.2 Score=39.42 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=44.4
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
....+.++....+|..|. ..+..+|+.+|.++|++...+.. +....+.-++.+|+++++|+.|
T Consensus 135 ~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-----~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 135 TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-----FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHhcchhhh
Confidence 346677888888887665 67889999999999998766521 1233555667777777776665
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.69 E-value=6.6 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHhcccccccccchhHHHH--HHHhhhcccc
Q 007725 104 KMLKKQGNELYSEGRFSNALQK--YLLAKKNLQG 135 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~--Y~kAL~l~p~ 135 (591)
+.++.+|..++..|+|++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577889999999999999999 5577666543
No 307
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=60.21 E-value=4.5 Score=28.91 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=26.7
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccc
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 134 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p 134 (591)
+.+..+|......++|.+|+.-|.++|++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999998743
No 308
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=58.84 E-value=8.7 Score=41.52 Aligned_cols=104 Identities=11% Similarity=0.096 Sum_probs=69.8
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec---cccchhhhhhcce-eeeccccchH
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSE-VLAYDAKNVK 181 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~---lg~y~eAi~~~~~-AL~ldP~~~~ 181 (591)
+.++=-.|-.-.+|+.=|++++.. ...|.+.... ...+...+|.++.+ .|+.++|+..+.. .....+.+++
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l-~~~p~~~~~~----~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETL-EALPTCDVAN----QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHh-hccCccchhc----chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 334334566777787766666544 3333322100 01122345566666 8999999999988 5566778899
Q ss_pred HHHHhccchhhh---------hhHHHHhhhcccccccCCCCC
Q 007725 182 ALYRRGQAYKDI---------GRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 182 a~~~rg~al~~l---------g~~eeAl~~lekAl~l~P~~~ 214 (591)
.|+.+|.+|..+ ..+++|+.+|.++.+++|+.-
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 999999988653 347889999999999998653
No 309
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.57 E-value=2.2 Score=48.39 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=59.3
Q ss_pred eccccceeeeccccchhhhhhcceeeeccc------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a 216 (591)
++-|-|.-+++.++|..+++.|...++.-| +.++...++..||..+.+++.|+++++.|-+.+|.++-.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 445677778899999999999999987654 457888899999999999999999999999999987643
No 310
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=4.4 Score=42.16 Aligned_cols=85 Identities=7% Similarity=-0.041 Sum_probs=50.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHH----------------------------------HHh
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY----------------------------------LLA 129 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y----------------------------------~kA 129 (591)
++..+...+...+...++..+....++.+|...|+++.|...| .+.
T Consensus 149 ~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~ 228 (304)
T COG3118 149 DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRR 228 (304)
T ss_pred chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3444444455555555555555666666666666665544443 222
Q ss_pred hhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725 130 KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (591)
Q Consensus 130 L~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP 177 (591)
+.-+|++.. +.+-++..|...|++++|.+.+-..++.|-
T Consensus 229 ~aadPdd~~---------aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 229 LAADPDDVE---------AALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 223344433 567788888899999999888776666544
No 311
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.53 E-value=2.4 Score=42.99 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=61.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc----
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---- 178 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~---- 178 (591)
++.+-..+..+.....+.+++.+|++|..+.-.+.. ..-...-+-++.=.++..+.++|+.+|++++.+--.
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs----pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS----PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH
Confidence 444444555556677788888888888776433221 001112223333344566788899999888765321
Q ss_pred --chHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 179 --NVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 179 --~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
-...+-..+.+|+++.+|+||-..+.+-.
T Consensus 147 ~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 147 QMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 23345556778888899988877766543
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=57.16 E-value=1.1 Score=46.50 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=57.4
Q ss_pred eeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 144 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 144 l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
++..++..++..+...++++.++..+++.+.++|.+-..|+++=.+|...|+...|+..|++.-.+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345577778888888999999999999999999999999999999999999999999988877553
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=57.11 E-value=16 Score=43.00 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=63.5
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.|+--|..+-..|+.+.|+.+|..|-.+ +.+-.++.-+|+.++|....++ ..+..+.|
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D~-----------------fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcY 971 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKDY-----------------FSMVRIKCIQGKTDKAARIAEE-----SGDKAACY 971 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhh-----------------hhheeeEeeccCchHHHHHHHh-----cccHHHHH
Confidence 3444566677899999999999988653 3333334457888888776655 46788999
Q ss_pred HhccchhhhhhHHHHhhhccccccc
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
.+|.-|...|++.+|+..|.+|-..
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887543
No 314
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.46 E-value=6.3 Score=43.57 Aligned_cols=103 Identities=21% Similarity=0.184 Sum_probs=78.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
....+..+.-+|-....-+.|+.|...|..|.++.... ++.+.|-.|+|..|++.++-+.--+..+.. .|.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~ 433 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI------DLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPL 433 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH------HHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCC
Confidence 33456677778888889999999999999999875443 235667889999999988655443333332 333
Q ss_pred ----------chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 179 ----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 179 ----------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
....+|..|.-.+..+++.||...+++.++..
T Consensus 434 nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 434 NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 24578889999999999999999999999886
No 315
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=54.93 E-value=12 Score=26.79 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.2
Q ss_pred ChhhhchhHHHhhhcChHHHHHHHHH
Q 007725 385 RPDMLKTASDVMSKMSSEDLQKMFEM 410 (591)
Q Consensus 385 ~P~m~~~a~~mm~nm~pe~~~~m~~m 410 (591)
||.+..+.++|++| |+.+..|++.
T Consensus 10 ~P~~~~~l~~~~~n--P~~~~~~~~~ 33 (41)
T smart00727 10 NPQVQSLLQDMQQN--PDMLAQMLQE 33 (41)
T ss_pred CHHHHHHHHHHHHC--HHHHHHHHHh
Confidence 89999999999999 9999998864
No 316
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=54.17 E-value=3.1 Score=42.23 Aligned_cols=62 Identities=11% Similarity=-0.134 Sum_probs=50.4
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~ 192 (591)
|+.+|.+|+.+.|.... .|+.+|.++...+++-.|+-+|-|++-..--++.+.-|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~---------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN---------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH---------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC---------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999865 799999999999999999999999987766667788777777766
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.68 E-value=8 Score=36.37 Aligned_cols=72 Identities=8% Similarity=-0.088 Sum_probs=61.2
Q ss_pred ccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
...+++++...++..--+.|+.+....--|..++..|+|.+|+..|+....-.+..+-....+..|.+.+++
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 466777777777776677899999999999999999999999999999988888878788888888887765
No 318
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.51 E-value=3.6 Score=44.29 Aligned_cols=106 Identities=19% Similarity=0.013 Sum_probs=79.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhcccc-ccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP 177 (591)
|..--.++......+.++|-|..|++..+-.+.++|. ||.. +.+-+=...++.++|+--++.++.......
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g--------~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG--------VLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch--------hHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 4445566777777889999999999999999999999 7641 333344445677888888888877654212
Q ss_pred c-----chHHHHHhccchhhhhhH---------------HHHhhhcccccccCCC
Q 007725 178 K-----NVKALYRRGQAYKDIGRL---------------EEAVSDLSNAHEVSPD 212 (591)
Q Consensus 178 ~-----~~~a~~~rg~al~~lg~~---------------eeAl~~lekAl~l~P~ 212 (591)
. -+..-|.++.|+..+++- ++|...+.+|+...|.
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1 235667888899888888 8899999999887774
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.39 E-value=12 Score=36.69 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhhhcccc----cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 82 PEEIATMRARIDAQMNY----EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~----~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
..+++.+..++...+.+ +.+ .-.-.+++.+.+..|.|++|+........- .+ .....--+|.+++
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk-~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-----~w-----~~~~~elrGDill 170 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLK-ALAALRLARVQLQQKKADAALKTLDTIKEE-----SW-----AAIVAELRGDILL 170 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHH-HHHHHHHHHHHHHhhhHHHHHHHHhccccc-----cH-----HHHHHHHhhhHHH
Confidence 34566666666655532 222 233456788899999999998877643321 00 0111234899999
Q ss_pred ccccchhhhhhcceeeeccccc
Q 007725 158 KTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
..|+-.+|+..|.+++..+++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 9999999999999999887544
No 320
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.22 E-value=11 Score=31.22 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=23.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...+..+=+.|+|.+|+.+|.++|++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455666777888899999999999887774
No 321
>PRK09687 putative lyase; Provisional
Probab=50.05 E-value=1.1e+02 Score=31.70 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=13.1
Q ss_pred HHHHHhhcCC-cchHHHHHHHHhhChh-HHHH
Q 007725 13 LAQEQMNRMS-PDDFARIQQQMMANPE-LMRI 42 (591)
Q Consensus 13 ~A~e~m~~m~-p~~l~r~~~~~~~~p~-l~r~ 42 (591)
.|+..+...+ ++.+..+.. ++.+++ .+|.
T Consensus 42 ~A~~aL~~~~~~~~~~~l~~-ll~~~d~~vR~ 72 (280)
T PRK09687 42 SSIRVLQLRGGQDVFRLAIE-LCSSKNPIERD 72 (280)
T ss_pred HHHHHHHhcCcchHHHHHHH-HHhCCCHHHHH
Confidence 5555555553 333333333 455444 4444
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.59 E-value=12 Score=40.30 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=68.7
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeee--ccccceeeeccccchhhhhhcceeee
Q 007725 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLAC--SLNSMSCYLKTKQYDECIKVGSEVLA 174 (591)
Q Consensus 97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~--~~Nla~~y~~lg~y~eAi~~~~~AL~ 174 (591)
+.+|-.++.+..++.++..+|++..|.++.++||-.....-.. .+..+ -...|.|.+.-..++
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~----~F~~~~~~~~~g~~rL~~~~~e----------- 98 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP----SFSPFRSNLTSGNCRLDYRRPE----------- 98 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH----HhhhhhcccccCccccCCcccc-----------
Confidence 3466668899999999999999999999999998765543110 01001 112223332211111
Q ss_pred ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC-CCh
Q 007725 175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGT 215 (591)
Q Consensus 175 ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~-~~~ 215 (591)
|-....++++....+.+.|.|.-|+++++-.+.+||. |+-
T Consensus 99 -NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 99 -NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred -chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 2234667788888888888899999999888899888 553
No 323
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.33 E-value=4.6 Score=44.03 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=66.9
Q ss_pred ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725 111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (591)
Q Consensus 111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al 190 (591)
..+.-.|+|..|++..+- |++....--+.+..-.+.+|+.+|.||+-+++|.+|++.+...|-.--.....++.+..-+
T Consensus 130 Rvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~ 208 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQY 208 (404)
T ss_pred HHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchh
Confidence 346678999999887542 2222211111223335678899999999999999999999888743222222233333333
Q ss_pred hh-hhhHHHHhhhcccccccCCC--CChHHHHH
Q 007725 191 KD-IGRLEEAVSDLSNAHEVSPD--DGTIADVL 220 (591)
Q Consensus 191 ~~-lg~~eeAl~~lekAl~l~P~--~~~a~~~L 220 (591)
-. .+..|.....+--++.+.|. +..+...+
T Consensus 209 d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~l 241 (404)
T PF10255_consen 209 DQINKKNEQMYALLAICLSLCPQRLDESISSQL 241 (404)
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 22 35577777778888888886 33344433
No 324
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.25 E-value=1.9 Score=39.02 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=49.4
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccc--cccceeeeeeccccceeeeccccchhhhhhcceeee
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS--SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 174 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~--~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ 174 (591)
-.+-.+...+...|+|++++..-.++|.+.....+ .+...+.+.+.++++.++-.+|+.++|+..|+.+-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34455666788899999999988888887654321 112234455678899999999999999998887643
No 325
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.08 E-value=51 Score=39.92 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=72.5
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc------
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA------ 177 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP------ 177 (591)
..+...|+.+|..+.|+.|.-+|.-.- -|..++..+..+|+|..|+...++|-...-
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vS-----------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVS-----------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 345678999999999999988888542 256788888999999999999888853210
Q ss_pred -------------------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 178 -------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 178 -------------------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
-+++-+--+-.-|...|.|+|-+..++.++.+...+--...+|+.+..+
T Consensus 1258 aCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 0111122233345567788888888888888877665555555554333
No 326
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=48.33 E-value=90 Score=36.10 Aligned_cols=128 Identities=9% Similarity=0.004 Sum_probs=93.7
Q ss_pred HHHHHHHHhhhhccc----ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc----cceee------eee
Q 007725 83 EEIATMRARIDAQMN----YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE----GRTLL------LAC 148 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~----~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e----~~~l~------~~~ 148 (591)
++++.+..-++++.+ +..+.+..|.+-|..-.+..+++.|+++..+|... |..+..+ ..+.. ..+
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHH
Confidence 355666666666655 34456778888888888999999999999999874 4332200 00110 113
Q ss_pred ccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
|.-.+...-..|-++.....|++.|.+.--.+....|.|.-+-+-..++++.+.|++.+.+-+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 444455555667888888999999999888899999999999999999999999999999864
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.25 E-value=12 Score=42.75 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=73.4
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-----cchhhhhhcceeeeccccchHHHHHhcc
Q 007725 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-----QYDECIKVGSEVLAYDAKNVKALYRRGQ 188 (591)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-----~y~eAi~~~~~AL~ldP~~~~a~~~rg~ 188 (591)
-..++.+.|+.+|.++..-..... ......+.+.+|.||.+.. ++..|+..|.++-. -+++.+.|++|.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a----~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--~g~~~a~~~lg~ 333 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAA----TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE--LGNPDAQYLLGV 333 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH----hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh--cCCchHHHHHHH
Confidence 356789999999999877100000 0001236778888888753 67789999988864 478889999999
Q ss_pred chhhhh---hHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 189 AYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 189 al~~lg---~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+|..-. ++..|+.+|..|... .+..+...|..+...
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 997544 578999999998643 456677777776443
No 328
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=5.7 Score=40.72 Aligned_cols=109 Identities=8% Similarity=-0.076 Sum_probs=82.6
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccccchHHHHHhccchh
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~ 191 (591)
+++..+-..|+++-..+|.++|.+-. +|..|-.|+..++ +..+-++.+++.++-+|.|...|+.|-.+..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYT---------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive 123 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYT---------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVE 123 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccch---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 44555667788899999999887744 6666777777665 4566678888888889999999999988888
Q ss_pred hhhhHH-HHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 192 DIGRLE-EAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 192 ~lg~~e-eAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
.+|+.. .-++..+..+..|.+|-.+|....-+.+..+..
T Consensus 124 ~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 124 LLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence 888877 778888888888888777776665555554443
No 329
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=47.45 E-value=12 Score=30.93 Aligned_cols=24 Identities=29% Similarity=0.654 Sum_probs=18.5
Q ss_pred ccccccccccccCCCchHHHHHHH
Q 007725 554 VQGVKKTKNWLLGKPGMILAICML 577 (591)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~l 577 (591)
.+...|+-+|+++||++.++++++
T Consensus 26 ~~hl~rvE~WilrNp~~al~a~~l 49 (75)
T PF01004_consen 26 WKHLTRVESWILRNPGYALAAVAL 49 (75)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHH
Confidence 345556899999999988777665
No 330
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.36 E-value=42 Score=40.59 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=30.0
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
+..-|.+++.+++.+|+|..|+...++| ++...|.....+
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFA 1258 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHH
Confidence 3445677889999999999999998888 344566666554
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=47.04 E-value=3.2 Score=41.34 Aligned_cols=72 Identities=18% Similarity=0.030 Sum_probs=48.1
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l 175 (591)
+.+..+..+++......-+..|++.|.+++..... +..... ...+.+-+|.+++++|++++|++.+.++|..
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~-~~~~~~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF-PIEGMD--EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC-CCCCch--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34444455555444455567888888888875433 110111 1235667999999999999999999999864
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.01 E-value=79 Score=30.83 Aligned_cols=139 Identities=9% Similarity=-0.004 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeec
Q 007725 70 VAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS 149 (591)
Q Consensus 70 ~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~ 149 (591)
+.+....+....+++--++..+++........ .-++...+..+..+|+...|+..|.++-...+ .|. ..+-.+.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~----~~rd~AR 135 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQ----IGRDLAR 135 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-Ccc----hhhHHHH
Confidence 33333333333444433344444444332222 44566778889999999999999998766432 222 0112234
Q ss_pred cccceeeeccccchhhhhhccee-eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 150 LNSMSCYLKTKQYDECIKVGSEV-LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 150 ~Nla~~y~~lg~y~eAi~~~~~A-L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
+.-+.++...|.|+....-.+.. -.-+|-...+.-.+|.+-++.|+|..|..+|..... |-.-+.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcH
Confidence 55566677888898876655432 233455566667789999999999999999998765 433333
No 333
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=46.74 E-value=8.8 Score=41.49 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=66.8
Q ss_pred eccccceeeeccccchhhhhhcceeeec----cccchHHHHHhccchhh---hhhHHHHhhhccc-ccccCCCCChHHHH
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAY----DAKNVKALYRRGQAYKD---IGRLEEAVSDLSN-AHEVSPDDGTIADV 219 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~l----dP~~~~a~~~rg~al~~---lg~~eeAl~~lek-Al~l~P~~~~a~~~ 219 (591)
...|+=.+|+..++|+.-|+..+..-.+ -++.....+.+|.|+.+ .|+.++|+..+.. .....+.+++.+..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 4567888899999999999888776655 45567777888888888 9999999999999 44556678899999
Q ss_pred HhHHHHHhhh
Q 007725 220 LRDAKEILMK 229 (591)
Q Consensus 220 L~~a~~~l~~ 229 (591)
++.+.+.+-.
T Consensus 223 ~GRIyKD~~~ 232 (374)
T PF13281_consen 223 LGRIYKDLFL 232 (374)
T ss_pred HHHHHHHHHH
Confidence 9999887744
No 334
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.59 E-value=13 Score=29.78 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...|..+=+.|+|.+|+.+|.+++++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445666777777899999999999999885
No 335
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=46.21 E-value=84 Score=33.39 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=75.9
Q ss_pred CcchHHHHHHHHhhChhHHHHhhhhhccC-CCchhhhhhhhhcCCChhHHHHHHHHhh-----cCChHHHHHH-------
Q 007725 22 SPDDFARIQQQMMANPELMRIATENMKNM-RPEDLKCAAEQLTHTPPEEVAEIGEKLA-----NASPEEIATM------- 88 (591)
Q Consensus 22 ~p~~l~r~~~~~~~~p~l~r~A~e~m~~~-~pe~~~~a~e~l~~~~pee~~a~~~k~~-----~~~~~e~~~a------- 88 (591)
.+..|-+.--+++++..++.-++...++. ..+++-.+..+=+..-..++..+...++ -..|+-++..
T Consensus 33 ~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le~Pd~~~~~~~~k~~~ 112 (432)
T KOG2758|consen 33 DEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPNALVEKRTEVLAELKELEEEVAPIVKVLENPDLIAALRSDKDRV 112 (432)
T ss_pred CHHHHHHHHHHHHcccchHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhHH
Confidence 66667666667888888998898888887 3344433221111110111111111100 0122222222
Q ss_pred --HHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccc-ccccccceeeeeeccccceeeeccccchhh
Q 007725 89 --RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 89 --~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
.+.+++...+.++..+.++..+...|.-|+|..|..+.-....+.+. ++. .+..+|..+|.- .-+.+|+.|
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n-----~lsalwGKlASE-IL~qnWd~A 186 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN-----YLSALWGKLASE-ILTQNWDGA 186 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh-----hHHHHHHHHHHH-HHHhhHHHH
Confidence 23334444567888899999999999999999988763332222221 110 011223333221 234677777
Q ss_pred hhhcceee
Q 007725 166 IKVGSEVL 173 (591)
Q Consensus 166 i~~~~~AL 173 (591)
.+++.+.-
T Consensus 187 ~edL~rLr 194 (432)
T KOG2758|consen 187 LEDLTRLR 194 (432)
T ss_pred HHHHHHHH
Confidence 77776653
No 336
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.89 E-value=10 Score=39.78 Aligned_cols=78 Identities=5% Similarity=-0.031 Sum_probs=62.2
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccc-cceeeeccccchhhhhhcceeeecc
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN-SMSCYLKTKQYDECIKVGSEVLAYD 176 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N-la~~y~~lg~y~eAi~~~~~AL~ld 176 (591)
+.+..+..|....+...+.+-|.+--..|.+++...|.+.+ +|.- .+.-|...++++.+...+.++|+.+
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd---------lWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD---------LWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce---------eeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 45556777777777778888899988999999999888865 4544 3334556789999999999999999
Q ss_pred ccchHHHH
Q 007725 177 AKNVKALY 184 (591)
Q Consensus 177 P~~~~a~~ 184 (591)
|++++.|+
T Consensus 173 ~~~p~iw~ 180 (435)
T COG5191 173 SRSPRIWI 180 (435)
T ss_pred CCCchHHH
Confidence 99988764
No 337
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.68 E-value=9.4 Score=40.44 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--cccchHHHHHhccchhhhh
Q 007725 117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--DAKNVKALYRRGQAYKDIG 194 (591)
Q Consensus 117 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--dP~~~~a~~~rg~al~~lg 194 (591)
=+|..=..+|.-...+.| .|- +-+|++.+.-+..-...++...+....- -.++-.+|..+|-.+.++|
T Consensus 310 tDW~~I~aLYdaL~~~ap-SPv---------V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLg 379 (415)
T COG4941 310 TDWPAIDALYDALEQAAP-SPV---------VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLG 379 (415)
T ss_pred CChHHHHHHHHHHHHhCC-CCe---------EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhC
Confidence 344444444554444433 332 5679988876666566666555443332 1246667788999999999
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 195 RLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
+.++|...|++|+.+.++..+....+..
T Consensus 380 r~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 380 RVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999999999887665444433
No 338
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=45.53 E-value=49 Score=29.23 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=12.7
Q ss_pred HHHHhhcCCcchHHHHHH
Q 007725 14 AQEQMNRMSPDDFARIQQ 31 (591)
Q Consensus 14 A~e~m~~m~p~~l~r~~~ 31 (591)
..+....|+|++-.+++.
T Consensus 34 ~a~r~~~mspeqq~r~~~ 51 (107)
T PF11304_consen 34 IAERWPSMSPEQQQRLRE 51 (107)
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 455667778888777666
No 339
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.98 E-value=9.3 Score=42.44 Aligned_cols=73 Identities=4% Similarity=-0.058 Sum_probs=58.9
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-chhhhhhcceeeeccccch
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~-y~eAi~~~~~AL~ldP~~~ 180 (591)
.+..|....+...+.+.|.+--..|.++|.+.|++++ +|.--|.-.+.-+. .+.|...+.++|+.+|+++
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d---------LWI~aA~wefe~n~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD---------LWIYAAKWEFEINLNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch---------hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence 4566666666666677788888999999999999987 67766766666665 8889999999999999998
Q ss_pred HHH
Q 007725 181 KAL 183 (591)
Q Consensus 181 ~a~ 183 (591)
+.|
T Consensus 175 ~Lw 177 (568)
T KOG2396|consen 175 KLW 177 (568)
T ss_pred HHH
Confidence 865
No 340
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.44 E-value=15 Score=30.43 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...+..+=+.|+|.+|+.+|.++|++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666777888899999999999999986
No 341
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=43.73 E-value=4.8 Score=41.54 Aligned_cols=103 Identities=18% Similarity=0.120 Sum_probs=69.5
Q ss_pred ccccccchhHHHHHHHhhhcc-ccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeecc----c---c-----
Q 007725 113 LYSEGRFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYD----A---K----- 178 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ld----P---~----- 178 (591)
..++|+++.|..+|.|+-.+. ..+|. ..+.++..++|.|...+..+ +|++|+..+++++++- . .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~--~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPD--MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcH--HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 457899999999999998766 22322 22345567889999999999 9999999999998872 1 1
Q ss_pred --chHHHHHhccchhhhhhHHH---HhhhcccccccCCCCChHH
Q 007725 179 --NVKALYRRGQAYKDIGRLEE---AVSDLSNAHEVSPDDGTIA 217 (591)
Q Consensus 179 --~~~a~~~rg~al~~lg~~ee---Al~~lekAl~l~P~~~~a~ 217 (591)
....+..++.+|...+.++. |+..++.+-.-.|+.+.+.
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 23456667777777665543 4444444434445555544
No 342
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.32 E-value=16 Score=30.37 Aligned_cols=30 Identities=40% Similarity=0.398 Sum_probs=24.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...|..+=+.|+|.+|+.+|.++|++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445667778888899999999999998885
No 343
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.21 E-value=5.3 Score=40.58 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=53.3
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
..|..++..... ..-........|..|+..|+|++|+++|+.+......+.- ..+...+...+..|+.++|+.+..
T Consensus 162 ~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 162 EKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---WSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344444444333 2223445568899999999999999999999665333221 122334566778888888888887
Q ss_pred hhhccee
Q 007725 166 IKVGSEV 172 (591)
Q Consensus 166 i~~~~~A 172 (591)
+..+-+.
T Consensus 238 l~~~leL 244 (247)
T PF11817_consen 238 LTTSLEL 244 (247)
T ss_pred HHHHHHH
Confidence 7665443
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.13 E-value=29 Score=41.12 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=76.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-----
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----- 178 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----- 178 (591)
....-.+-.+....+|.+|..+..++....+.-...-...++.....-++.+.+..+++++|++.++.++..-|.
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 344445556677888888888877766554431111112222223334677777889999999999999987664
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
...+++..|.+..-.|++++|+.+...+.+..-
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 366888999999999999999999998887743
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.02 E-value=5.5 Score=43.88 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=12.0
Q ss_pred HHHHhcCCHHHHHHHHHHhh
Q 007725 483 QMRNQMNDPAMKQMFSSMVK 502 (591)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk 502 (591)
..+-+=|=|-+-....+.|.
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~ 676 (831)
T PRK15180 657 SIRHINNIPFLIDLIANVMS 676 (831)
T ss_pred HHhhhcCchhHHHHHHHhHh
Confidence 45555566766666666553
No 346
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.51 E-value=55 Score=26.69 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=26.7
Q ss_pred HHHHHHHHhhc--CCHHHHhhhhhhhccccChhhHH
Q 007725 493 MKQMFSSMVKN--MSPEMMANMSEQFGIKLSREDTE 526 (591)
Q Consensus 493 m~~m~~~mmk~--m~p~~~~~m~~~~g~~~~~~~~~ 526 (591)
.++|...+.+| .++|++.-|..|+|.|-|..+--
T Consensus 26 rk~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI~ 61 (71)
T COG3763 26 RKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKIN 61 (71)
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHHH
Confidence 35556666777 88999999999999999976543
No 347
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=41.97 E-value=34 Score=31.02 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=37.4
Q ss_pred cChhhHHHHHHHhccCCccc-hhhHHH----hHHHHhhhccccccccccccC-CCchHHHHHHHHHH
Q 007725 520 LSREDTEKFQQTMSSLSLND-LDRMML----WADRVQRGVQGVKKTKNWLLG-KPGMILAICMLILA 580 (591)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~-l~~~~~----~~~~~q~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a 580 (591)
-|+|+..+++..+..+.-++ ++.+-. |.+++|.+++..-. |+.| ||.+++..+.+|+.
T Consensus 12 ~~~e~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~eln~~~a---fv~rwRP~~~~~~~~~~~~ 75 (123)
T PF11351_consen 12 PDPEERAQAKAELQQAALEQFAAEFEAARRARFDRMQAELNRADA---FVRRWRPALGWVCLLLFAW 75 (123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc---cccccccHHHHHHHHHHHH
Confidence 36677777777776666554 233333 67777776665544 8888 88777776666555
No 348
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=41.81 E-value=15 Score=25.94 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=13.3
Q ss_pred CCchHHHHHHHHHHHHH
Q 007725 567 KPGMILAICMLILAVIL 583 (591)
Q Consensus 567 ~~~~~~~~~~l~~a~~l 583 (591)
|.+++++++|++|.++|
T Consensus 14 r~Wi~F~l~mi~vFi~l 30 (38)
T PF09125_consen 14 RGWIAFALAMILVFIAL 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 45678899998888775
No 349
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.94 E-value=7 Score=41.33 Aligned_cols=58 Identities=14% Similarity=-0.064 Sum_probs=39.2
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHH
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~ 185 (591)
.+.-+..|++||+.+|++.. +++.+-.++.+.-+-++..+.+++++..+|++...|..
T Consensus 47 ~E~klsilerAL~~np~~~~---------L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~ 104 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER---------LLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWRE 104 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 35567779999999886654 22223333345556677778888899888888776643
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.94 E-value=12 Score=31.31 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=34.2
Q ss_pred eccccchhhhhhcceeeeccccchHHHHH---hccchhhhhhHHHHhhhccc
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKNVKALYR---RGQAYKDIGRLEEAVSDLSN 205 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~---rg~al~~lg~~eeAl~~lek 205 (591)
+...+.++|+..++++|+..++....+.. +..||.+.|+|.+.+++.-+
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888876665554444 45577888888887766543
No 351
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.61 E-value=19 Score=29.85 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...|...=..|+|++|+.+|..+|++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 4556777777788899999999999999986
No 352
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.55 E-value=8.9 Score=40.53 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=52.0
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
.+.-+..|++||+.+|++.+.+..+=.+..+....++...-+++++..+|++..+|..+-.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4567789999999999999998888888888888888899999999999998887765544
No 353
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.11 E-value=16 Score=40.59 Aligned_cols=124 Identities=12% Similarity=0.020 Sum_probs=88.1
Q ss_pred ChHHHHHHHHhhhhcccccch---HHHHHHHhcccc-cccccchhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725 81 SPEEIATMRARIDAQMNYEFN---AAKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~---~a~~lk~~Gn~~-~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y 156 (591)
.|..+..+.+.+++.+.+.+. .+.....+|..+ +...+++.|..+.++|+.+....|.. +++...++.-++.||
T Consensus 21 ~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--ydvKf~a~SlLa~lh 98 (629)
T KOG2300|consen 21 GPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--YDVKFQAASLLAHLH 98 (629)
T ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--HhhhhHHHHHHHHHH
Confidence 334444455555554443322 355667777765 45778899999999999988777752 244555677789999
Q ss_pred eccc-cchhhhhhcceeeeccccch----HHHHHhccchhhhhhHHHHhhhcccc
Q 007725 157 LKTK-QYDECIKVGSEVLAYDAKNV----KALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 157 ~~lg-~y~eAi~~~~~AL~ldP~~~----~a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
.... .+..+...++++|++.-.++ +..+.+++.+.-.++|..|++.+.-.
T Consensus 99 ~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 99 HQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG 153 (629)
T ss_pred HHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence 8887 78888899999999876554 45666788888888999998886543
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.70 E-value=17 Score=26.79 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHhccchhhhhhHHHHhhhcccccc
Q 007725 184 YRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 184 ~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
+.++.+|...|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677788888888888888887773
No 355
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=39.69 E-value=9.9 Score=43.74 Aligned_cols=81 Identities=12% Similarity=0.264 Sum_probs=52.6
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.-.++++.|..+.....|++|.++|.+.-. .-|...||+++..|++-..+.... |++.+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----------------~e~~~ecly~le~f~~LE~la~~L----pe~s~ 853 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----------------TENQIECLYRLELFGELEVLARTL----PEDSE 853 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------hHhHHHHHHHHHhhhhHHHHHHhc----Ccccc
Confidence 346778888888889999999999986532 347888999999988866554443 44444
Q ss_pred HHHHhccchhhhhhHHHHhhhc
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDL 203 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~l 203 (591)
.+-.+|..+...|--++|++.|
T Consensus 854 llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHH
Confidence 4444444444444444444433
No 356
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.12 E-value=20 Score=36.89 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=90.1
Q ss_pred hhhcccccchHHHHHHHhcccccccccch-hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcc
Q 007725 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFS-NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS 170 (591)
Q Consensus 92 ~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~-eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~ 170 (591)
+......++++-+.+...-...-..|++. .-++..++.|..+..+-+ +|.-|--|.+..+.|+.-+.++.
T Consensus 101 l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH---------aWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 101 LDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH---------AWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh---------hhHHHHHHHHHHhhHHHHHHHHH
Confidence 33444445555555544444444455555 566777777776555543 67888888888999999999999
Q ss_pred eeeeccccchHHHHHhccchhhh------hhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 171 EVLAYDAKNVKALYRRGQAYKDI------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 171 ~AL~ldP~~~~a~~~rg~al~~l------g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+.|+.|-.|-.+|..|-.+.... -..+.-+.+..+.+.+.|+|..+|..|.-+.+.
T Consensus 172 ~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 99999988888888877666542 345566778888899999999999988776554
No 357
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=38.71 E-value=23 Score=32.95 Aligned_cols=54 Identities=22% Similarity=0.175 Sum_probs=39.8
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
-......++...+..|+|.-|...+..++..+|+|.+++..+..+.++++....
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 445566677777788888889888888888899888888888888888876443
No 358
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.63 E-value=61 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=24.1
Q ss_pred CCcchHHHHHHHHhhChhHHHHhhhhhc
Q 007725 21 MSPDDFARIQQQMMANPELMRIATENMK 48 (591)
Q Consensus 21 m~p~~l~r~~~~~~~~p~l~r~A~e~m~ 48 (591)
++||-|..+..+.+.||.++++|++-++
T Consensus 41 ip~eKLQ~lm~~VMqnP~LikeAv~ELg 68 (82)
T PF11212_consen 41 IPQEKLQQLMAQVMQNPALIKEAVEELG 68 (82)
T ss_pred CCHHHHHHHHHHHhcChHHHHHHHHHhC
Confidence 5889998888888999999999988654
No 359
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.48 E-value=5.8 Score=43.47 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=63.3
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeeccccceeeeccccc-------------
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQY------------- 162 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~Nla~~y~~lg~y------------- 162 (591)
......+.|..++..|+|.+|+..|+..|...|-..- .+.++++..|.-.+-.+.+.+.+-
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 3445566788899999999999999999987553321 122223222221111111111110
Q ss_pred hhhhhhcceeeeccccchHHHHHhccch-hhhhhHHHHhhhcccccccCCCCC
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al-~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
-|-..+|+ -.++.|.|...-.+.|... ++.++|.-|....++.|++.|...
T Consensus 283 lELAAYFT-hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 283 LELAAYFT-HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHC-CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 11122222 2456677766666666644 689999999999999999998754
No 360
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.07 E-value=23 Score=33.39 Aligned_cols=82 Identities=10% Similarity=-0.055 Sum_probs=52.6
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.+.+.........++.++.......--+-|+.+. +-.--+..|...|+|.+|+..++++.+-.+..+-+--
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 3333344444477777777766666566666654 3445666777888888888888887776666554444
Q ss_pred Hhccchhhhhh
Q 007725 185 RRGQAYKDIGR 195 (591)
Q Consensus 185 ~rg~al~~lg~ 195 (591)
-++.|+.-+|+
T Consensus 83 L~A~CL~al~D 93 (153)
T TIGR02561 83 LLALCLNAKGD 93 (153)
T ss_pred HHHHHHHhcCC
Confidence 56666666655
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=37.92 E-value=15 Score=36.84 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=55.0
Q ss_pred eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007725 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (591)
Q Consensus 156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~ 218 (591)
+++-+...++|.....-++-.|.+....+-+=..|+-.|+|++|..-++-+..++|++..-.+
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ 73 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGAS 73 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHH
Confidence 456678889999999999999999998888888999999999999999999999999864333
No 362
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=37.75 E-value=6.3 Score=41.92 Aligned_cols=81 Identities=9% Similarity=-0.052 Sum_probs=60.8
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
...+.+.+.++.+.|..|+..-..++..++.. ..+|+.++..|..+.+|++|++++..+....|++.....
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~---------tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSK---------TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhh---------CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 34456666778888888887777777744433 458999999999999999999999999999999876555
Q ss_pred Hhccchhhhh
Q 007725 185 RRGQAYKDIG 194 (591)
Q Consensus 185 ~rg~al~~lg 194 (591)
.+..+-....
T Consensus 348 ~~~~~~~~~~ 357 (372)
T KOG0546|consen 348 ELENVRQKKK 357 (372)
T ss_pred HHHHhhhHHH
Confidence 5444444333
No 363
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=36.38 E-value=91 Score=34.40 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=14.7
Q ss_pred CCCCCCCCccccccCccCCCCCCCC--CChh
Q 007725 359 ENPHANGDSIETNFNGFRPGSTPPN--MRPD 387 (591)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~P~ 387 (591)
+++++.++++..+.+|+++|++.++ .||.
T Consensus 67 ~~g~~s~~g~~s~~~gg~~~~~g~gsscnP~ 97 (641)
T KOG3915|consen 67 GGGGGSGGGGGSSGNGGGGGGGGGGSSCNPN 97 (641)
T ss_pred CCCCCCCCCccccCCCCCCCCCCCccccCCc
Confidence 3334444555555666665444333 3776
No 364
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.04 E-value=23 Score=28.93 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...|...=..|+|++|+.+|..++++
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556777778888899999999999988875
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.02 E-value=30 Score=36.16 Aligned_cols=62 Identities=19% Similarity=0.099 Sum_probs=51.7
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
-+.+...+..|.+.|.+.+|+...++++.+||-+...+..|-.+...+++.-.+..+|+...
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455567788899999999999999999999999999999999999988777666666544
No 366
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=34.39 E-value=80 Score=24.96 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=43.7
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCHHHHhhhhhhhccccChhhHHHHHHHhccCCccchhhH
Q 007725 484 MRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRM 543 (591)
Q Consensus 484 m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (591)
+..+-+||.+++-... --+|+.+-.+....|...|.++-.++ -..||++.|+..
T Consensus 8 l~~~~~d~~L~~~l~~---~~~~e~~~~lA~~~Gf~ft~~el~~~---~~elsd~eL~~v 61 (64)
T TIGR03798 8 LEKVKTDPDLREKLKA---AEDPEDRVAIAKEAGFEFTGEDLKEA---GEELSDEELEAV 61 (64)
T ss_pred HHHHHcCHHHHHHHHH---cCCHHHHHHHHHHcCCCCCHHHHHHH---HhhCCHHHHHhh
Confidence 4566789999865444 46799999999999999999998874 668999988753
No 367
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=33.82 E-value=28 Score=28.29 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=23.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...|..+=..|+|++|+.+|..+++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444566667777789999999999988875
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=33.74 E-value=25 Score=40.62 Aligned_cols=122 Identities=12% Similarity=0.069 Sum_probs=83.1
Q ss_pred HHHHHHHhccccc-ccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc--
Q 007725 102 AAKMLKKQGNELY-SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-- 178 (591)
Q Consensus 102 ~a~~lk~~Gn~~~-~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-- 178 (591)
.+...+.+|..++ ...++++|..+..|++.+.... ...++...+.+-++.+|.+.+... |...+++.|+..-.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERH---RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 5678888999887 7889999999999999887652 123333334455678887777766 99999998876544
Q ss_pred --chHHHHHhccch-h-hhhhHHHHhhhcccccccC--CCCChHHHHHhHHHHHh
Q 007725 179 --NVKALYRRGQAY-K-DIGRLEEAVSDLSNAHEVS--PDDGTIADVLRDAKEIL 227 (591)
Q Consensus 179 --~~~a~~~rg~al-~-~lg~~eeAl~~lekAl~l~--P~~~~a~~~L~~a~~~l 227 (591)
.+..+|++-.+. . ..+++..|+..++....+. ..+..+.-.+...+..+
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 455556654332 2 2268999999999888776 35555444444444433
No 369
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=33.39 E-value=63 Score=26.22 Aligned_cols=54 Identities=13% Similarity=0.313 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHhhcC-CcchHHHHHHHHhhChh-HHHH-hhhhhccCCCchhhhhhhh
Q 007725 7 DPEMIRLAQEQMNRM-SPDDFARIQQQMMANPE-LMRI-ATENMKNMRPEDLKCAAEQ 61 (591)
Q Consensus 7 ~P~i~r~A~e~m~~m-~p~~l~r~~~~~~~~p~-l~r~-A~e~m~~~~pe~~~~a~e~ 61 (591)
+|.+.+.|.+.+.++ +++.+..+.+ ++.|++ .+|. |...+..+..++.......
T Consensus 13 ~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~ 69 (88)
T PF13646_consen 13 DPQVRAEAARALGELGDPEAIPALIE-LLKDEDPMVRRAAARALGRIGDPEAIPALIK 69 (88)
T ss_dssp SHHHHHHHHHHHHCCTHHHHHHHHHH-HHTSSSHHHHHHHHHHHHCCHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHH-HHcCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 566666999999999 4555555555 667776 6666 7777877755554444333
No 370
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.90 E-value=28 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.127 Sum_probs=25.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...|...=..|+|++|+.+|..+|++
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3556677778888899999999999999885
No 371
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.75 E-value=21 Score=36.52 Aligned_cols=62 Identities=18% Similarity=0.037 Sum_probs=47.3
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeecc----ccchhhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 194 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l----g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg 194 (591)
+..|+..|.++-...-. .+.++++.||... .++.+|+..|.+|-+... ..++++++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~~~-----------~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELGNP-----------DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhcCH-----------HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 34799999998876422 2677888888653 488999999999987766 88888888 666555
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.66 E-value=25 Score=38.97 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=65.5
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~ 192 (591)
....|+...|-+....+|...|.+|. ...-++.++..+|+|+.+..+..-+-.+-..-.++.--+-..+..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~---------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV---------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch---------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc
Confidence 34567777777778888888888875 233467777889999999888777655545555555556667778
Q ss_pred hhhHHHHhhhcccccccCCCCCh
Q 007725 193 IGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 193 lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
+++|++|....+-.+.-.-.+++
T Consensus 370 l~r~~~a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIEDEE 392 (831)
T ss_pred hhhHHHHHHHHHHHhccccCChh
Confidence 88999988777666554434433
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.64 E-value=30 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=18.1
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 195 RLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
+++.|...|++++...|.+..+|..+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4566677777777777766666655544
No 374
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=31.32 E-value=47 Score=38.73 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=38.9
Q ss_pred eeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 144 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 144 l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
....+|--++.-|...|+|+-|.+.|.++=..+ .+ -..|.+.|+|+.|.+..+++.
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~----da----i~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEADLFK----DA----IDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcchhH----HH----HHHHhccccHHHHHHHHHHhc
Confidence 345577788999999999999999998873211 11 123456678888877766664
No 375
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=31.20 E-value=24 Score=29.21 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=12.2
Q ss_pred HHHHhhhcccccccCCCCChHH
Q 007725 196 LEEAVSDLSNAHEVSPDDGTIA 217 (591)
Q Consensus 196 ~eeAl~~lekAl~l~P~~~~a~ 217 (591)
|.+|++.|.+++...|+++.-.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHH
Confidence 4444455555566677766533
No 376
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.13 E-value=31 Score=27.97 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=22.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...|...=..|+|++|+.+|..+++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666779999999999988875
No 377
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=30.62 E-value=26 Score=36.43 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=54.3
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
.+.++|..++.++...++++.++..+++.+.++|-+..++..+-.+...-+....+...|+...
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4677888899999999999999999999999999999999999988888777666665555443
No 378
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.13 E-value=20 Score=39.00 Aligned_cols=101 Identities=12% Similarity=-0.020 Sum_probs=78.3
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc--cchhhhhhcceeeeccccchHHHHHhccchhhhhh
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg--~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~ 195 (591)
-.++-+.+-..+|..+|.... +|+-|..|+.+.. ++..=++.|+++|++||.|..+|..|-.+......
T Consensus 90 ~ld~eL~~~~~~L~~npksY~---------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYG---------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHH---------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 556677778888999888754 7888888887665 36778899999999999999998887766654333
Q ss_pred ----HHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 196 ----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 196 ----~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
..+-+++..+++.-++.|-.+|.....+...+
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 56778888888888888878887777665555
No 379
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=29.05 E-value=1.2e+02 Score=28.33 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=10.7
Q ss_pred cCCcchHHHHHHH
Q 007725 20 RMSPDDFARIQQQ 32 (591)
Q Consensus 20 ~m~p~~l~r~~~~ 32 (591)
.++|+++.+++.+
T Consensus 29 tysp~~l~~i~~~ 41 (142)
T TIGR03042 29 TYSPAQLAQIQRQ 41 (142)
T ss_pred CCCHHHHHHHHHH
Confidence 5789999998884
No 380
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=28.54 E-value=9.2 Score=36.85 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred eccccceeeeccccchhhhhhcceeeeccc---cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP---~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
++..+|..|.+.|++++|++.|.++..... .....+++.-.+.+..++|.....++.++-.+--
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 567788899999999999999999887653 2456778888888889999999999888876643
No 381
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=28.50 E-value=34 Score=41.46 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=65.4
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHH
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~ 185 (591)
+..++...-....|.+|+..|++.-. .+.-|. -|+..|.+|.++++|++-+++|.-|++..|.++..-..
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 522 LLEKASEQGDPRDFTQALSEFSYLHG-GVGAPL---------EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhcC-CCCCch---------HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 33344444444678888888887543 344443 48889999999999999999999999999988765444
Q ss_pred hccchhhh-----hhHHHHhhhcccccccCCCCC
Q 007725 186 RGQAYKDI-----GRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 186 rg~al~~l-----g~~eeAl~~lekAl~l~P~~~ 214 (591)
+-.+.+++ .+...|+...--++.+.|...
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 592 RDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 44333333 123345444555666677644
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.48 E-value=34 Score=40.35 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=30.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 134 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p 134 (591)
.......++..|+.+|++|+|++|...|-++|....
T Consensus 364 ~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 364 EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 344566788899999999999999999999988644
No 383
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.39 E-value=11 Score=46.19 Aligned_cols=111 Identities=10% Similarity=-0.027 Sum_probs=83.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--- 175 (591)
.++.+..+..++..+.+.+++++|+..-.++.-+....-. ....-....|.|++...+..+....|+..+.+++.+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g-~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG-KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc-CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 5667788899999999999999999997777665443211 001112336788888888888888888877777654
Q ss_pred -----cccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725 176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (591)
Q Consensus 176 -----dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~ 210 (591)
.|.-+....+++..+..+++++-|+.+++.|+.+.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45555666788888999999999999999998854
No 384
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=28.25 E-value=2.1e+02 Score=32.00 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=16.2
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCHHHHhh
Q 007725 484 MRNQMNDPAMKQMFSSMVKNMSPEMMAN 511 (591)
Q Consensus 484 m~~~m~~p~m~~m~~~mmk~m~p~~~~~ 511 (591)
|.++.+ |.++.|+.++-.+ |...+.
T Consensus 347 ~~~l~s-~~~~~m~~~~s~~--P~~a~~ 371 (493)
T KOG0010|consen 347 LQQLLS-PYIRSMFQSASQN--PLQAAQ 371 (493)
T ss_pred hhhccc-hhhHHHHhhhccC--chhhhc
Confidence 444455 7777777777766 666554
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.11 E-value=16 Score=39.86 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=43.8
Q ss_pred ccceeeeccccchhhhhhcceeeec---------cccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAY---------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~l---------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
-+..++.-+|+|..|++..+-. ++ -+-+...+|..|.||.-++||.+|+..|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666789999999875442 22 34577889999999999999999999998765
No 386
>COG5546 Small integral membrane protein [Function unknown]
Probab=28.02 E-value=43 Score=27.54 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=18.4
Q ss_pred cccccC--CCchHHHHHHHHHHHHHhhhccCC
Q 007725 561 KNWLLG--KPGMILAICMLILAVILHRLGFIG 590 (591)
Q Consensus 561 ~~~~~~--~~~~~~~~~~l~~a~~l~~~~~~~ 590 (591)
+||-.+ ++.+.+||+-+|+.+.=..+||+|
T Consensus 2 INwkvRmknkvf~vail~~ifllAQqll~~fG 33 (80)
T COG5546 2 INWKVRMKNKVFLVAILGAIFLLAQQLLGWFG 33 (80)
T ss_pred CceEEEecCceehHHHHHHHHHHHHHHHHHee
Confidence 467655 666777777666655544455555
No 387
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=27.92 E-value=71 Score=27.62 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=28.9
Q ss_pred HHHhhcCCHHHHhhhhhhh-------ccccChhhHHHHHHH
Q 007725 498 SSMVKNMSPEMMANMSEQF-------GIKLSREDTEKFQQT 531 (591)
Q Consensus 498 ~~mmk~m~p~~~~~m~~~~-------g~~~~~~~~~~~~~~ 531 (591)
..|+.+|+||--.++-..- |..||+||=+...|+
T Consensus 2 ~~li~~mtPevY~rL~~AVElGKWpDG~~LT~eQre~~mQa 42 (93)
T PF07023_consen 2 EQLIDSMTPEVYERLKQAVELGKWPDGRALTPEQRESCMQA 42 (93)
T ss_pred hHHHHhCCHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 4789999999999998876 899999998876554
No 388
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=27.81 E-value=61 Score=38.45 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=15.2
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccc
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
+.|..-|.-+...|+.+.|+..|+.|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHh
Confidence 44455555555666666666666655
No 389
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.40 E-value=37 Score=30.45 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=9.5
Q ss_pred hhhHHHhHHHHhhhccccccc
Q 007725 540 LDRMMLWADRVQRGVQGVKKT 560 (591)
Q Consensus 540 l~~~~~~~~~~q~~~~~~~~~ 560 (591)
|+.+-.=++.+|.+...++++
T Consensus 59 L~~L~drad~L~~~as~F~~~ 79 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKT 79 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555554444443
No 390
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=27.38 E-value=65 Score=22.38 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=13.2
Q ss_pred CCchHHHHHHHHHHHHHh-hhc
Q 007725 567 KPGMILAICMLILAVILH-RLG 587 (591)
Q Consensus 567 ~~~~~~~~~~l~~a~~l~-~~~ 587 (591)
||-=.++.++++.++||- |||
T Consensus 4 kp~Gal~vv~iLt~~ILvFWfg 25 (34)
T PF08113_consen 4 KPKGALGVVMILTAFILVFWFG 25 (34)
T ss_dssp STHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeeeHHHHHHHHHHHHHH
Confidence 343456666677777776 766
No 391
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=27.30 E-value=34 Score=27.38 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhhhccC
Q 007725 570 MILAICMLILAVILHRLGFI 589 (591)
Q Consensus 570 ~~~~~~~l~~a~~l~~~~~~ 589 (591)
..+|+..+++-++-.|+|||
T Consensus 41 V~lS~~l~~lil~~~~~G~i 60 (63)
T PF11137_consen 41 VGLSALLFLLILIALYTGWI 60 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 45666666666666799998
No 392
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=27.18 E-value=17 Score=32.39 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=47.2
Q ss_pred cceeeeccccchhhhhhcceeeeccccch---HHHHHhccchhhhhh-----------HHHHhhhcccccccCCCCC
Q 007725 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGR-----------LEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 152 la~~y~~lg~y~eAi~~~~~AL~ldP~~~---~a~~~rg~al~~lg~-----------~eeAl~~lekAl~l~P~~~ 214 (591)
++.-+++.|++-+|++..+..+...+++. -.++.-|.++..+.. +-.++++|.++..+.|..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 34556788999999999999988877665 455556777755543 3458999999999999863
No 393
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=26.58 E-value=22 Score=40.52 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhh--hccccccccccceeeeeeccccceeeeccccchhhhhhcce--eeeccc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAK--KNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE--VLAYDA 177 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL--~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~--AL~ldP 177 (591)
....+..-+..++..|++..|...+.+.- .+.+.. .....+-.+.+++..+++.+|+..+.. ...+.+
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q--------~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~ 94 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ--------QARYQLLRARLALAQGDPEQALSLLNAQDLWQLPP 94 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH--------HHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCH
Confidence 44556666777888999999988877654 122211 233566788888899999999998874 122222
Q ss_pred -cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 178 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 178 -~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
....+|..++.+|...|++-+|+..+-+.-.+-+
T Consensus 95 ~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 95 EQQARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 2345566678888888998888877665555444
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=26.51 E-value=11 Score=35.18 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=38.0
Q ss_pred ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHH
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE 198 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ee 198 (591)
.++..++..|+|.-|.+.++.++..+|+|..+...++.+|..+|.-.+
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 455556678999999999999999999999999999999998887543
No 395
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=26.47 E-value=41 Score=27.75 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...|...=..|+|++|+.+|..+|++
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445566667777779999999999999885
No 396
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=25.65 E-value=57 Score=27.28 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=25.7
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccc
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 134 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p 134 (591)
+.+....++|..+=..|+.++|+.+|++++....
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 3455566777777777899999999999988643
No 397
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=25.61 E-value=22 Score=39.21 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=48.5
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhccee
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A 172 (591)
.......+..+|.+|+|.++.-+-.-..++.| .+. +|.-+|.|++..++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~---------~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQ---------AYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHH---------HHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455566778999999999888888888877 443 6888999999999999999988664
No 398
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.46 E-value=4.5e+02 Score=31.39 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=13.1
Q ss_pred ccccchhHHHHHHHhhhccc
Q 007725 115 SEGRFSNALQKYLLAKKNLQ 134 (591)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l~p 134 (591)
-++.|+++-.+|.-......
T Consensus 377 ir~emDd~~~~f~lL~n~vk 396 (1102)
T KOG1924|consen 377 IRAEMDDANEVFELLANTVK 396 (1102)
T ss_pred hhhhhccHHHHHHHHHHhhh
Confidence 45667777777776665543
No 399
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=25.23 E-value=48 Score=34.53 Aligned_cols=28 Identities=21% Similarity=0.584 Sum_probs=18.3
Q ss_pred cccCCC--chHHHHHHHHHHHHHhhhccCC
Q 007725 563 WLLGKP--GMILAICMLILAVILHRLGFIG 590 (591)
Q Consensus 563 ~~~~~~--~~~~~~~~l~~a~~l~~~~~~~ 590 (591)
|+++|+ -..+-++++++++|++++|.+|
T Consensus 253 ~llkKk~~~~~li~~~~v~~ii~~~~Gil~ 282 (282)
T PRK11103 253 WLLRKKVNALWIIVGFFVIGIAGYWCGLLG 282 (282)
T ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHhhcC
Confidence 455444 2444455557888899999876
No 400
>PRK09687 putative lyase; Provisional
Probab=24.68 E-value=6.8e+02 Score=25.82 Aligned_cols=14 Identities=7% Similarity=-0.130 Sum_probs=7.5
Q ss_pred hHHHHHHHhhhccc
Q 007725 121 NALQKYLLAKKNLQ 134 (591)
Q Consensus 121 eAi~~Y~kAL~l~p 134 (591)
+|+..+.+.+...+
T Consensus 252 ~a~p~L~~l~~~~~ 265 (280)
T PRK09687 252 TLLPVLDTLLYKFD 265 (280)
T ss_pred hHHHHHHHHHhhCC
Confidence 45555665555433
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.09 E-value=56 Score=34.81 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=35.0
Q ss_pred eeccccceeeeccccchhhhhhcceeeecccc--chHHHHHhccchhhhhhHHHHhhhcccc
Q 007725 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
++-..++.|.+++|+.++|++.++...+--|- -...+-|+-.++.++.-|.+....+-+.
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455777888888888888777666554442 2234445555666665555544444433
No 402
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.72 E-value=26 Score=36.18 Aligned_cols=17 Identities=53% Similarity=0.929 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHh--hh
Q 007725 570 MILAICMLILAVILH--RL 586 (591)
Q Consensus 570 ~~~~~~~l~~a~~l~--~~ 586 (591)
..++|+.||+|+.|| ||
T Consensus 146 F~LaivlLIIAv~L~qaWf 164 (381)
T PF05297_consen 146 FLLAIVLLIIAVLLHQAWF 164 (381)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 346777888888887 55
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=39 Score=36.81 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=52.2
Q ss_pred cceeeeccccchhhhhhcceee----eccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 152 SMSCYLKTKQYDECIKVGSEVL----AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 152 la~~y~~lg~y~eAi~~~~~AL----~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
+=.||+.-+.|+.|-....++. .-+..++.++|.+|.+..-+++|..|.+++-.|+...|++.
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 4457777888999888777765 12336788999999999999999999999999999999854
No 404
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=21.63 E-value=51 Score=36.39 Aligned_cols=123 Identities=21% Similarity=0.227 Sum_probs=75.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccc----------------eeeec-cc---cc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM----------------SCYLK-TK---QY 162 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla----------------~~y~~-lg---~y 162 (591)
....+..|...+..++|.+++..+.+||...-.... ..+.|..|.. .||+. -| +.
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~-----~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~ 105 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRD-----SEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER 105 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhh-----hHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHH
Confidence 345667888888899999999888888875321111 0001111111 00000 01 11
Q ss_pred hhhhhhcceeeecccc----------chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 163 DECIKVGSEVLAYDAK----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~----------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
..++.-|...+--.|. ....|..+-.+|++.|++..|++.....+.-+|++..+...+..-+..++..
T Consensus 106 a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s 183 (471)
T KOG4459|consen 106 AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVS 183 (471)
T ss_pred HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCC
Confidence 1223333333322222 2356777889999999999999999999999999999998888876555443
No 405
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=21.49 E-value=72 Score=32.77 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=31.4
Q ss_pred hhHHHHHHHhccCCccchhhHHHhHHHHhhhccccccccccccCCCc--hHHHHHHHHHHHHHhhhccC
Q 007725 523 EDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPG--MILAICMLILAVILHRLGFI 589 (591)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~l~~a~~l~~~~~~ 589 (591)
+.....|+.+.+|=|.=|--+.-- ..=||++|+. +.+=+.++++.+|.+|||++
T Consensus 214 ~~~~~~Q~~LD~i~Pgllpl~~t~-------------~~~wLl~Kkv~p~~iI~~~~vigIvg~~lGil 269 (269)
T COG3716 214 KVVATVQDILDKIFPGLLPLLLTL-------------LMYWLLRKKVNPTWLILGTFVLGIVGSALGIL 269 (269)
T ss_pred ceeehHHHHHHHHhhhHHHHHHHH-------------HHHHHHccCCchHHHHHHHHHHHHHHHHhccC
Confidence 445556776666666544332211 2347777544 33444556778999999974
No 406
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.28 E-value=64 Score=27.23 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=14.9
Q ss_pred CCchHHHHHHHHHHHHHhhhc
Q 007725 567 KPGMILAICMLILAVILHRLG 587 (591)
Q Consensus 567 ~~~~~~~~~~l~~a~~l~~~~ 587 (591)
++.+.++++.+|+.++...+|
T Consensus 10 N~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 10 NKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 667777888877777766444
No 407
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=21.21 E-value=1.1e+02 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.635 Sum_probs=18.1
Q ss_pred HHhhcCCcchHHHHHHHHhh--ChhHHHH
Q 007725 16 EQMNRMSPDDFARIQQQMMA--NPELMRI 42 (591)
Q Consensus 16 e~m~~m~p~~l~r~~~~~~~--~p~l~r~ 42 (591)
+.|+.|||+++..-++.++. ||.++..
T Consensus 10 ~rL~~MS~eEI~~er~eL~~~LdP~li~~ 38 (49)
T PF08621_consen 10 ARLASMSPEEIEEEREELLESLDPKLIEF 38 (49)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45778888888777776655 5554443
No 408
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.14 E-value=2.5e+02 Score=32.84 Aligned_cols=52 Identities=15% Similarity=0.019 Sum_probs=39.4
Q ss_pred eccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
++.++++.+...+...-...-.....+|.+|.++..+|+.++|...|+++..
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3677777766665554332335678899999999999999999999999854
No 409
>PRK10132 hypothetical protein; Provisional
Probab=20.55 E-value=81 Score=28.01 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=36.0
Q ss_pred ChhhHHHHHHHhccCCccchhhHHHhHHHHhhhccccccccccccCCCchHHHHHHHHHHHHHhhh
Q 007725 521 SREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRL 586 (591)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~l~~~ 586 (591)
+.++++++.....+.=...-+++-.+.+..++.-+.+..|..|+.-+|+-.++|... |-|||.+|
T Consensus 39 ~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaag-vG~llG~L 103 (108)
T PRK10132 39 AKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAA-VGIFIGAL 103 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHH
Confidence 344444444444332222333444444434444556677899999999987777655 44444443
No 410
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.53 E-value=1e+02 Score=33.30 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=52.1
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
.+.+..+...|+.+++.++|++|...|..|..+.... |- +.. -.+
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei-------------------------~G------e~~----~e~ 82 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEI-------------------------YG------EKH----LET 82 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHH-------------------------hh------hhH----HHH
Confidence 3456678899999999999999999999998863332 10 111 145
Q ss_pred hHHHHHhccchhhhhhHHHHhhhccc
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSN 205 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lek 205 (591)
..++|..|.+++.+++++..+...-.
T Consensus 83 ~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 83 FEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 66778888888888888888765543
No 411
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=54 Score=35.75 Aligned_cols=119 Identities=12% Similarity=0.025 Sum_probs=84.7
Q ss_pred hhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc----cchhhh
Q 007725 93 DAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----QYDECI 166 (591)
Q Consensus 93 ~~~l~~~~~~a~~lk~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg----~y~eAi 166 (591)
...++.+++.-.++...--.+.+.+ ++..=++...++|+.+|.+-. +|..|-.++.... ...+=+
T Consensus 99 ~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh---------~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 99 ESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH---------AWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc---------chHHHHHHHHHHhcccccchhHH
Confidence 3445567887777777766665444 467888999999999887744 5544444443332 356778
Q ss_pred hhcceeeeccccchHHHHHhccchhhh------h------hHHHHhhhcccccccCCCCChHHHHH
Q 007725 167 KVGSEVLAYDAKNVKALYRRGQAYKDI------G------RLEEAVSDLSNAHEVSPDDGTIADVL 220 (591)
Q Consensus 167 ~~~~~AL~ldP~~~~a~~~rg~al~~l------g------~~eeAl~~lekAl~l~P~~~~a~~~L 220 (591)
++++++|.-++.|..+|++|-..+..+ | .+..-+++...|+=-||+|..+|...
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 899999999999999999998877622 2 24556677777777888888777653
Done!