Query 007725
Match_columns 591
No_of_seqs 459 out of 2568
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 6.2E-20 2.1E-24 164.5 0.1 117 98-223 8-124 (126)
2 2hr2_A Hypothetical protein; a 99.7 4E-19 1.4E-23 166.5 -3.7 126 102-229 10-151 (159)
3 3rkv_A Putative peptidylprolyl 99.7 3.6E-18 1.2E-22 157.6 -0.2 135 99-233 7-151 (162)
4 2pl2_A Hypothetical conserved 99.6 8.4E-18 2.9E-22 163.7 -0.4 194 36-239 4-210 (217)
5 4ga2_A E3 SUMO-protein ligase 99.6 8.9E-18 3E-22 154.5 -1.7 138 81-227 9-147 (150)
6 3gyz_A Chaperone protein IPGC; 99.6 3.3E-17 1.1E-21 152.3 -0.0 121 85-214 18-138 (151)
7 3upv_A Heat shock protein STI1 99.6 3.5E-17 1.2E-21 144.1 -0.8 118 101-227 2-125 (126)
8 4gcn_A Protein STI-1; structur 99.6 3.7E-17 1.3E-21 146.2 -1.1 114 100-223 5-125 (127)
9 4gyw_A UDP-N-acetylglucosamine 99.6 6.4E-17 2.2E-21 185.9 -0.3 172 66-246 5-177 (723)
10 2vgx_A Chaperone SYCD; alterna 99.6 9.3E-17 3.2E-21 147.6 0.4 133 91-232 9-141 (148)
11 3sz7_A HSC70 cochaperone (SGT) 99.6 1.7E-16 5.8E-21 146.6 0.2 122 99-229 7-130 (164)
12 2xcb_A PCRH, regulatory protei 99.6 1.6E-16 5.4E-21 143.9 -0.7 130 91-229 6-135 (142)
13 1p5q_A FKBP52, FK506-binding p 99.5 1.1E-16 3.8E-21 167.0 -4.0 160 87-246 131-297 (336)
14 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.1E-16 7.2E-21 171.9 -2.8 145 88-232 253-403 (457)
15 4i17_A Hypothetical protein; T 99.5 6.4E-16 2.2E-20 149.7 0.1 190 36-227 6-227 (228)
16 2fbn_A 70 kDa peptidylprolyl i 99.5 5.4E-16 1.9E-20 147.7 -0.6 150 85-234 20-176 (198)
17 2pl2_A Hypothetical conserved 99.5 4E-16 1.4E-20 151.8 -3.0 149 83-241 19-178 (217)
18 4gyw_A UDP-N-acetylglucosamine 99.5 6E-16 2E-20 177.9 -2.2 134 99-241 5-138 (723)
19 2if4_A ATFKBP42; FKBP-like, al 99.5 1.1E-15 3.9E-20 159.5 -0.4 145 97-241 173-326 (338)
20 2h6f_A Protein farnesyltransfe 99.5 1.5E-15 5E-20 162.0 -1.4 156 64-228 91-248 (382)
21 4ga2_A E3 SUMO-protein ligase 99.5 2E-15 7E-20 138.6 -1.2 117 108-233 2-118 (150)
22 2h6f_A Protein farnesyltransfe 99.5 2.4E-15 8.1E-20 160.4 -2.3 173 47-228 108-288 (382)
23 3q49_B STIP1 homology and U bo 99.5 2.4E-15 8.4E-20 133.1 -1.9 122 99-229 5-131 (137)
24 3vtx_A MAMA; tetratricopeptide 99.5 2.2E-15 7.5E-20 140.7 -2.5 150 83-241 19-168 (184)
25 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-15 6.3E-20 141.3 -3.2 165 41-214 10-175 (184)
26 2pzi_A Probable serine/threoni 99.4 1.1E-14 3.7E-19 166.3 0.6 170 47-226 402-580 (681)
27 2lni_A Stress-induced-phosphop 99.4 1.4E-14 4.6E-19 126.4 0.7 121 99-228 12-132 (133)
28 4abn_A Tetratricopeptide repea 99.4 8.1E-15 2.8E-19 160.0 -1.0 182 43-234 109-312 (474)
29 1ihg_A Cyclophilin 40; ppiase 99.4 7.3E-15 2.5E-19 155.8 -1.7 133 99-231 219-358 (370)
30 3urz_A Uncharacterized protein 99.4 2.7E-14 9.2E-19 137.9 1.9 130 39-194 7-136 (208)
31 3urz_A Uncharacterized protein 99.4 1.4E-14 4.7E-19 139.9 -0.2 117 103-228 4-136 (208)
32 1elw_A TPR1-domain of HOP; HOP 99.4 2.3E-14 7.8E-19 121.7 0.5 115 102-225 3-117 (118)
33 1hxi_A PEX5, peroxisome target 99.4 1.5E-14 5.1E-19 128.2 -1.2 102 105-215 19-120 (121)
34 2vyi_A SGTA protein; chaperone 99.4 3.4E-14 1.1E-18 122.7 0.7 123 99-230 8-130 (131)
35 4i17_A Hypothetical protein; T 99.4 2.7E-14 9.4E-19 138.1 0.1 138 83-229 21-168 (228)
36 2dba_A Smooth muscle cell asso 99.4 3.1E-14 1.1E-18 126.7 -0.1 122 98-225 23-144 (148)
37 4abn_A Tetratricopeptide repea 99.4 1.6E-14 5.3E-19 157.7 -3.0 170 62-241 94-285 (474)
38 3u4t_A TPR repeat-containing p 99.4 2.9E-14 9.9E-19 140.4 -1.1 194 39-241 6-206 (272)
39 3qky_A Outer membrane assembly 99.4 1.1E-13 3.6E-18 137.2 2.6 190 39-234 18-252 (261)
40 4eqf_A PEX5-related protein; a 99.4 2.9E-14 1E-18 147.2 -1.6 203 39-241 68-274 (365)
41 1w3b_A UDP-N-acetylglucosamine 99.4 1.1E-14 3.7E-19 152.0 -5.3 145 85-238 49-193 (388)
42 2q7f_A YRRB protein; TPR, prot 99.4 3.1E-14 1.1E-18 137.2 -2.2 193 40-241 27-220 (243)
43 1elr_A TPR2A-domain of HOP; HO 99.4 7.1E-14 2.4E-18 120.9 0.2 120 101-230 2-128 (131)
44 1w3b_A UDP-N-acetylglucosamine 99.4 6.1E-14 2.1E-18 146.3 -0.4 150 83-241 149-298 (388)
45 1zu2_A Mitochondrial import re 99.3 4.4E-14 1.5E-18 132.0 -1.5 106 113-227 12-138 (158)
46 4eqf_A PEX5-related protein; a 99.3 3.4E-14 1.2E-18 146.7 -2.5 190 43-241 106-308 (365)
47 1fch_A Peroxisomal targeting s 99.3 4.2E-14 1.4E-18 145.3 -2.5 154 83-245 195-361 (368)
48 2e2e_A Formate-dependent nitri 99.3 7.5E-14 2.6E-18 129.8 -0.6 133 84-225 25-160 (177)
49 1a17_A Serine/threonine protei 99.3 6.4E-14 2.2E-18 127.1 -1.3 125 100-233 10-136 (166)
50 3cv0_A Peroxisome targeting si 99.3 8.6E-14 2.9E-18 139.7 -1.7 156 80-244 149-316 (327)
51 1wao_1 Serine/threonine protei 99.3 1.5E-13 5.2E-18 150.4 0.1 129 101-238 4-134 (477)
52 3hym_B Cell division cycle pro 99.3 4.3E-14 1.5E-18 142.1 -4.0 200 33-241 18-220 (330)
53 2pzi_A Probable serine/threoni 99.3 2.6E-14 9E-19 163.0 -6.4 149 81-239 403-559 (681)
54 2xev_A YBGF; tetratricopeptide 99.3 1.2E-13 4.2E-18 120.7 -1.2 116 105-226 4-122 (129)
55 3uq3_A Heat shock protein STI1 99.3 5.2E-14 1.8E-18 136.4 -4.5 158 84-241 53-234 (258)
56 3gyz_A Chaperone protein IPGC; 99.3 1.3E-14 4.5E-19 134.6 -8.4 110 124-242 23-132 (151)
57 2vsy_A XCC0866; transferase, g 99.3 1E-13 3.6E-18 153.6 -2.8 141 85-234 5-148 (568)
58 2ho1_A Type 4 fimbrial biogene 99.3 1.6E-13 5.4E-18 133.7 -1.7 187 43-238 44-233 (252)
59 3qky_A Outer membrane assembly 99.3 6.5E-14 2.2E-18 138.7 -4.6 140 83-228 29-199 (261)
60 3as5_A MAMA; tetratricopeptide 99.3 1.4E-13 4.7E-18 126.0 -2.1 149 84-241 23-171 (186)
61 3uq3_A Heat shock protein STI1 99.3 5.6E-13 1.9E-17 129.0 2.0 131 84-223 120-256 (258)
62 3ieg_A DNAJ homolog subfamily 99.3 9.9E-13 3.4E-17 133.2 3.4 180 47-231 165-357 (359)
63 3hym_B Cell division cycle pro 99.3 2.3E-13 7.7E-18 136.8 -1.6 141 84-233 140-289 (330)
64 2q7f_A YRRB protein; TPR, prot 99.3 2.3E-13 7.8E-18 131.1 -1.6 176 43-227 64-240 (243)
65 3k9i_A BH0479 protein; putativ 99.3 1.3E-13 4.6E-18 120.3 -3.0 104 115-227 2-108 (117)
66 1fch_A Peroxisomal targeting s 99.3 2.6E-13 8.9E-18 139.3 -1.3 203 39-241 67-312 (368)
67 2c2l_A CHIP, carboxy terminus 99.3 2.7E-13 9.1E-18 137.5 -1.3 103 102-213 3-105 (281)
68 1na0_A Designed protein CTPR3; 99.3 5.2E-13 1.8E-17 114.2 0.5 116 103-227 9-124 (125)
69 3ieg_A DNAJ homolog subfamily 99.3 1.9E-13 6.4E-18 138.6 -3.0 194 39-241 6-215 (359)
70 2kck_A TPR repeat; tetratricop 99.2 3E-13 1E-17 113.8 -2.3 106 100-214 3-111 (112)
71 4gco_A Protein STI-1; structur 99.2 6.9E-13 2.4E-17 118.3 -0.4 120 62-190 5-125 (126)
72 2vq2_A PILW, putative fimbrial 99.2 5.6E-13 1.9E-17 126.3 -1.1 181 43-230 15-198 (225)
73 3u4t_A TPR repeat-containing p 99.2 5.1E-13 1.7E-17 131.4 -1.5 137 83-225 17-154 (272)
74 3qou_A Protein YBBN; thioredox 99.2 3.6E-13 1.2E-17 136.8 -2.7 150 82-240 130-281 (287)
75 2r5s_A Uncharacterized protein 99.2 4.5E-13 1.6E-17 125.3 -2.1 147 84-240 21-170 (176)
76 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.6E-13 1.6E-17 127.4 -2.4 126 102-239 5-146 (213)
77 2vq2_A PILW, putative fimbrial 99.2 5.7E-13 1.9E-17 126.2 -1.8 150 83-241 22-174 (225)
78 2l6j_A TPR repeat-containing p 99.2 5.4E-13 1.9E-17 113.2 -1.8 97 102-207 3-105 (111)
79 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.1E-12 7.2E-17 126.7 1.7 132 83-223 19-154 (275)
80 3cv0_A Peroxisome targeting si 99.2 1.1E-12 3.6E-17 131.7 -0.8 193 39-240 24-232 (327)
81 2y4t_A DNAJ homolog subfamily 99.2 2.6E-12 8.8E-17 135.8 1.9 180 47-231 188-380 (450)
82 3as5_A MAMA; tetratricopeptide 99.2 6.2E-13 2.1E-17 121.6 -3.0 166 43-217 15-181 (186)
83 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.3E-12 1.1E-16 121.4 1.4 120 84-215 21-156 (213)
84 2ho1_A Type 4 fimbrial biogene 99.2 6.8E-13 2.3E-17 129.2 -3.5 143 84-235 52-196 (252)
85 3mkr_A Coatomer subunit epsilo 99.2 4.8E-12 1.6E-16 129.1 2.5 131 84-230 116-250 (291)
86 3mkr_A Coatomer subunit epsilo 99.2 2.9E-12 9.9E-17 130.8 0.8 129 83-220 144-275 (291)
87 2vgx_A Chaperone SYCD; alterna 99.2 3.4E-13 1.2E-17 123.7 -6.3 111 122-241 6-116 (148)
88 2vsy_A XCC0866; transferase, g 99.1 3.4E-12 1.2E-16 141.5 -0.4 156 57-221 10-169 (568)
89 2y4t_A DNAJ homolog subfamily 99.1 1E-12 3.4E-17 139.0 -5.1 203 39-241 29-238 (450)
90 2e2e_A Formate-dependent nitri 99.1 8.7E-13 3E-17 122.5 -5.6 127 106-241 13-142 (177)
91 1xnf_A Lipoprotein NLPI; TPR, 99.1 7.9E-12 2.7E-16 122.5 0.9 140 84-235 58-267 (275)
92 2fo7_A Synthetic consensus TPR 99.1 1.7E-12 5.7E-17 111.9 -3.7 119 105-232 3-121 (136)
93 2gw1_A Mitochondrial precursor 99.1 4.1E-12 1.4E-16 136.0 -2.3 186 47-241 281-476 (514)
94 3fp2_A TPR repeat-containing p 99.1 6.5E-12 2.2E-16 135.7 -0.7 148 84-241 258-405 (537)
95 2fo7_A Synthetic consensus TPR 99.1 6.2E-12 2.1E-16 108.3 -1.2 119 85-212 17-135 (136)
96 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.5E-12 8.7E-17 125.1 -4.2 149 84-238 19-208 (225)
97 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.1E-12 1.7E-16 123.0 -2.3 110 103-218 4-134 (225)
98 1qqe_A Vesicular transport pro 99.1 2.2E-12 7.5E-17 131.0 -5.4 136 101-239 75-224 (292)
99 2xpi_A Anaphase-promoting comp 99.1 7.3E-12 2.5E-16 137.6 -1.9 185 48-241 385-577 (597)
100 2xcb_A PCRH, regulatory protei 99.1 3.1E-12 1.1E-16 115.4 -4.6 109 124-241 5-113 (142)
101 2xpi_A Anaphase-promoting comp 99.0 5.5E-12 1.9E-16 138.6 -4.4 148 85-241 355-502 (597)
102 3qou_A Protein YBBN; thioredox 99.0 1.9E-11 6.7E-16 124.0 -0.1 161 39-208 120-283 (287)
103 2kat_A Uncharacterized protein 99.0 1.4E-11 4.6E-16 106.6 -1.2 100 120-228 2-103 (115)
104 3fp2_A TPR repeat-containing p 99.0 5.7E-12 1.9E-16 136.1 -4.4 149 84-241 325-489 (537)
105 1qqe_A Vesicular transport pro 99.0 2.7E-11 9.3E-16 122.8 0.5 130 84-216 92-235 (292)
106 3edt_B KLC 2, kinesin light ch 99.0 7.2E-12 2.5E-16 122.4 -3.8 138 99-242 39-197 (283)
107 2gw1_A Mitochondrial precursor 99.0 5.9E-12 2E-16 134.7 -4.9 148 84-240 285-441 (514)
108 1p5q_A FKBP52, FK506-binding p 99.0 1.4E-11 4.7E-16 128.3 -2.3 117 82-207 160-292 (336)
109 2r5s_A Uncharacterized protein 99.0 6.5E-12 2.2E-16 117.3 -5.1 129 103-241 6-135 (176)
110 3edt_B KLC 2, kinesin light ch 99.0 1E-11 3.5E-16 121.3 -4.8 120 84-209 58-198 (283)
111 2hr2_A Hypothetical protein; a 99.0 1.3E-11 4.5E-16 115.4 -4.2 96 148-243 13-131 (159)
112 4g1t_A Interferon-induced prot 99.0 4.5E-11 1.5E-15 127.4 -0.8 133 102-234 50-192 (472)
113 3nf1_A KLC 1, kinesin light ch 99.0 2.2E-11 7.4E-16 121.2 -3.5 184 58-242 15-223 (311)
114 1wao_1 Serine/threonine protei 99.0 3.4E-11 1.2E-15 131.7 -2.3 123 83-214 20-155 (477)
115 1a17_A Serine/threonine protei 99.0 4.6E-11 1.6E-15 108.0 -1.4 116 84-208 28-145 (166)
116 4gcn_A Protein STI-1; structur 99.0 2.2E-11 7.6E-16 108.4 -3.5 93 148-240 10-109 (127)
117 2l6j_A TPR repeat-containing p 98.9 9.9E-11 3.4E-15 99.0 0.6 91 148-238 6-102 (111)
118 2if4_A ATFKBP42; FKBP-like, al 98.9 8.9E-11 3.1E-15 122.3 0.3 125 82-215 192-334 (338)
119 3sz7_A HSC70 cochaperone (SGT) 98.9 8.8E-11 3E-15 108.0 0.1 103 82-193 24-126 (164)
120 3nf1_A KLC 1, kinesin light ch 98.9 2.9E-11 1E-15 120.2 -4.0 120 84-209 84-224 (311)
121 2ond_A Cleavage stimulation fa 98.9 5.5E-11 1.9E-15 121.2 -2.8 134 87-228 82-217 (308)
122 1dce_A Protein (RAB geranylger 98.9 1.6E-10 5.5E-15 129.2 0.5 170 52-230 45-242 (567)
123 2ond_A Cleavage stimulation fa 98.9 1.1E-10 3.8E-15 119.0 -1.3 130 86-224 33-178 (308)
124 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 8.5E-11 2.9E-15 127.6 -2.3 112 82-202 281-407 (457)
125 2c2l_A CHIP, carboxy terminus 98.9 1E-10 3.6E-15 118.3 -2.6 135 83-226 18-181 (281)
126 3ulq_A Response regulator aspa 98.9 7.7E-11 2.6E-15 123.2 -3.9 157 84-242 118-292 (383)
127 1dce_A Protein (RAB geranylger 98.8 8.4E-10 2.9E-14 123.4 3.7 135 87-230 47-194 (567)
128 1hxi_A PEX5, peroxisome target 98.8 8.9E-11 3E-15 103.6 -3.6 94 148-241 19-112 (121)
129 2lni_A Stress-induced-phosphop 98.8 2.3E-10 8E-15 99.1 -0.9 103 84-195 31-133 (133)
130 2ifu_A Gamma-SNAP; membrane fu 98.8 3.5E-11 1.2E-15 122.9 -7.3 130 101-234 74-215 (307)
131 3upv_A Heat shock protein STI1 98.8 2.3E-10 7.9E-15 100.1 -1.2 101 83-192 18-124 (126)
132 2kc7_A BFR218_protein; tetratr 98.8 1.5E-10 5.2E-15 96.8 -2.3 92 107-214 4-95 (99)
133 3dra_A Protein farnesyltransfe 98.8 4.6E-10 1.6E-14 116.0 0.8 170 51-229 48-235 (306)
134 1zu2_A Mitochondrial import re 98.8 2.5E-10 8.4E-15 106.6 -1.7 89 84-181 17-126 (158)
135 3rkv_A Putative peptidylprolyl 98.8 3.2E-10 1.1E-14 104.0 -1.2 91 99-198 59-150 (162)
136 1na3_A Designed protein CTPR2; 98.8 3.6E-10 1.2E-14 92.1 -0.9 81 103-192 9-89 (91)
137 2vyi_A SGTA protein; chaperone 98.8 2.7E-10 9.3E-15 97.8 -1.9 104 84-196 27-130 (131)
138 3u3w_A Transcriptional activat 98.8 1.3E-10 4.4E-15 117.5 -4.9 136 103-241 115-264 (293)
139 3ulq_A Response regulator aspa 98.8 2.3E-10 7.8E-15 119.6 -3.7 126 84-212 158-296 (383)
140 4a1s_A PINS, partner of inscut 98.8 8.3E-11 2.8E-15 122.8 -7.3 200 39-241 51-290 (411)
141 2kck_A TPR repeat; tetratricop 98.8 2.1E-10 7.3E-15 96.1 -3.5 87 148-234 8-97 (112)
142 2fbn_A 70 kDa peptidylprolyl i 98.8 4.8E-10 1.6E-14 106.3 -1.6 96 103-207 88-184 (198)
143 3q15_A PSP28, response regulat 98.8 1.8E-10 6E-15 120.5 -5.5 156 84-241 116-288 (378)
144 1na3_A Designed protein CTPR2; 98.7 6.3E-10 2.2E-14 90.6 -1.2 80 148-227 11-90 (91)
145 3k9i_A BH0479 protein; putativ 98.7 3.1E-10 1E-14 98.7 -3.4 104 84-207 5-111 (117)
146 3sf4_A G-protein-signaling mod 98.7 1E-10 3.4E-15 120.9 -7.7 154 85-241 63-254 (406)
147 3ro3_A PINS homolog, G-protein 98.7 8.5E-11 2.9E-15 104.4 -7.3 135 101-238 7-153 (164)
148 3gw4_A Uncharacterized protein 98.7 2.7E-10 9.1E-15 106.7 -4.3 138 101-241 24-174 (203)
149 4g1t_A Interferon-induced prot 98.7 2.1E-09 7.2E-14 114.5 2.0 136 83-227 152-294 (472)
150 2ifu_A Gamma-SNAP; membrane fu 98.7 9E-10 3.1E-14 112.4 -0.8 111 101-216 114-230 (307)
151 3sf4_A G-protein-signaling mod 98.7 2.1E-10 7.1E-15 118.5 -5.7 154 85-241 163-334 (406)
152 1ihg_A Cyclophilin 40; ppiase 98.7 1.6E-09 5.5E-14 114.6 0.5 111 84-203 238-364 (370)
153 3q49_B STIP1 homology and U bo 98.7 4.1E-10 1.4E-14 99.1 -3.5 95 147-241 10-104 (137)
154 3u3w_A Transcriptional activat 98.7 5E-10 1.7E-14 113.1 -3.5 125 84-210 130-267 (293)
155 4a1s_A PINS, partner of inscut 98.7 3.9E-10 1.3E-14 117.7 -4.9 125 100-229 45-181 (411)
156 4f3v_A ESX-1 secretion system 98.7 1.2E-09 4E-14 111.5 -1.6 131 83-222 116-249 (282)
157 1ouv_A Conserved hypothetical 98.7 7.9E-10 2.7E-14 109.6 -2.9 126 84-226 57-194 (273)
158 3ma5_A Tetratricopeptide repea 98.7 7.9E-10 2.7E-14 93.9 -2.7 78 148-225 9-88 (100)
159 3ro2_A PINS homolog, G-protein 98.7 2.1E-10 7E-15 114.3 -7.8 140 99-241 79-250 (338)
160 3q7a_A Farnesyltransferase alp 98.7 2.6E-09 9E-14 112.1 -0.2 170 51-229 69-257 (349)
161 3q15_A PSP28, response regulat 98.6 3E-09 1E-13 111.1 0.0 111 99-212 178-293 (378)
162 2kc7_A BFR218_protein; tetratr 98.6 2.4E-09 8.4E-14 89.3 -0.6 79 149-227 3-84 (99)
163 3dra_A Protein farnesyltransfe 98.6 3.4E-09 1.1E-13 109.6 0.2 134 87-229 51-195 (306)
164 3ro2_A PINS homolog, G-protein 98.6 3.7E-10 1.3E-14 112.4 -7.1 139 99-240 179-329 (338)
165 2qfc_A PLCR protein; TPR, HTH, 98.6 6.3E-10 2.2E-14 112.4 -5.6 136 103-241 115-264 (293)
166 3dss_A Geranylgeranyl transfer 98.6 6.3E-09 2.2E-13 108.6 1.7 165 52-225 46-238 (331)
167 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-09 4.7E-14 109.9 -3.4 125 84-210 130-267 (293)
168 1ouv_A Conserved hypothetical 98.6 1.5E-09 5E-14 107.6 -3.2 126 84-226 21-158 (273)
169 1na0_A Designed protein CTPR3; 98.6 2.8E-09 9.4E-14 90.6 -1.2 102 84-194 24-125 (125)
170 1elw_A TPR1-domain of HOP; HOP 98.6 3.2E-09 1.1E-13 89.4 -1.3 98 84-190 19-116 (118)
171 3rjv_A Putative SEL1 repeat pr 98.6 1.9E-08 6.6E-13 97.0 4.0 127 85-226 34-174 (212)
172 2kat_A Uncharacterized protein 98.6 3.1E-09 1.1E-13 91.5 -2.0 100 88-196 4-105 (115)
173 4f3v_A ESX-1 secretion system 98.6 4.6E-09 1.6E-13 107.1 -1.3 150 82-241 19-198 (282)
174 3ro3_A PINS homolog, G-protein 98.6 1.3E-09 4.6E-14 96.6 -4.7 107 102-211 48-160 (164)
175 2dba_A Smooth muscle cell asso 98.6 6.9E-09 2.4E-13 91.6 -0.2 101 82-191 41-144 (148)
176 2xev_A YBGF; tetratricopeptide 98.5 2.1E-09 7.2E-14 93.4 -3.9 94 148-241 4-103 (129)
177 3rjv_A Putative SEL1 repeat pr 98.5 3.2E-09 1.1E-13 102.6 -3.6 112 101-226 16-137 (212)
178 3q7a_A Farnesyltransferase alp 98.5 1.2E-08 4.1E-13 107.1 -0.3 134 87-229 72-216 (349)
179 3gw4_A Uncharacterized protein 98.5 4.5E-09 1.5E-13 98.2 -3.2 126 85-212 42-179 (203)
180 3dss_A Geranylgeranyl transfer 98.5 1.7E-08 5.7E-13 105.4 0.6 132 88-228 49-193 (331)
181 1pc2_A Mitochondria fission pr 98.5 1.6E-08 5.5E-13 93.5 -0.2 107 114-229 9-120 (152)
182 2ooe_A Cleavage stimulation fa 98.5 3.3E-08 1.1E-12 108.2 1.8 169 54-231 304-480 (530)
183 3ma5_A Tetratricopeptide repea 98.5 1.2E-08 4E-13 86.5 -1.5 73 99-180 3-75 (100)
184 2ooe_A Cleavage stimulation fa 98.5 7E-09 2.4E-13 113.6 -3.8 139 87-233 304-444 (530)
185 3n71_A Histone lysine methyltr 98.4 8.5E-09 2.9E-13 113.3 -4.2 131 103-234 309-455 (490)
186 1elr_A TPR2A-domain of HOP; HO 98.4 1.3E-08 4.6E-13 87.2 -2.4 110 84-196 19-128 (131)
187 1hz4_A MALT regulatory protein 98.3 1.3E-08 4.4E-13 105.3 -5.7 128 103-233 53-193 (373)
188 3qww_A SET and MYND domain-con 98.2 1.2E-07 4.2E-12 102.4 -0.7 110 110-220 305-427 (433)
189 1klx_A Cysteine rich protein B 98.2 1.6E-07 5.5E-12 84.7 0.2 119 84-221 10-136 (138)
190 3qwp_A SET and MYND domain-con 98.2 9.8E-08 3.3E-12 103.1 -2.6 122 105-227 289-426 (429)
191 3bee_A Putative YFRE protein; 98.2 2.3E-07 7.9E-12 78.6 -0.1 68 148-215 8-78 (93)
192 3e4b_A ALGK; tetratricopeptide 98.1 9.9E-07 3.4E-11 95.2 3.6 127 82-226 192-330 (452)
193 3n71_A Histone lysine methyltr 98.0 5.4E-07 1.8E-11 98.9 -0.6 109 98-207 346-462 (490)
194 2v5f_A Prolyl 4-hydroxylase su 98.0 3.6E-07 1.2E-11 78.4 -1.7 90 103-228 5-94 (104)
195 1pc2_A Mitochondria fission pr 98.0 6.3E-07 2.1E-11 82.8 -0.5 102 81-190 10-115 (152)
196 2v5f_A Prolyl 4-hydroxylase su 98.0 6.7E-07 2.3E-11 76.7 -0.8 48 185-232 10-64 (104)
197 3e4b_A ALGK; tetratricopeptide 98.0 2.1E-06 7.3E-11 92.6 2.5 107 105-225 178-294 (452)
198 4b4t_Q 26S proteasome regulato 97.9 1.1E-06 3.8E-11 92.2 -0.3 134 104-240 96-235 (434)
199 2xm6_A Protein corresponding t 97.9 6.1E-07 2.1E-11 97.1 -2.9 110 102-226 290-411 (490)
200 1xi4_A Clathrin heavy chain; a 97.9 3.7E-06 1.3E-10 100.8 3.4 122 90-233 1090-1240(1630)
201 1hz4_A MALT regulatory protein 97.9 1.9E-07 6.3E-12 96.5 -7.2 133 103-239 14-160 (373)
202 2xm6_A Protein corresponding t 97.8 1.1E-06 3.6E-11 95.2 -2.8 93 103-208 111-215 (490)
203 3u64_A Protein TP_0956; tetrat 97.7 8.6E-06 2.9E-10 82.8 2.1 91 116-213 176-273 (301)
204 1xi4_A Clathrin heavy chain; a 97.7 4.7E-05 1.6E-09 91.4 8.1 62 146-212 1105-1166(1630)
205 1nzn_A CGI-135 protein, fissio 97.7 6.7E-06 2.3E-10 73.5 0.7 101 120-229 18-123 (126)
206 3ly7_A Transcriptional activat 97.7 1.5E-05 5.3E-10 83.8 3.4 128 77-214 207-344 (372)
207 3mv2_B Coatomer subunit epsilo 97.7 8.6E-06 2.9E-10 84.0 1.3 162 48-221 112-294 (310)
208 1klx_A Cysteine rich protein B 97.7 3.1E-06 1.1E-10 76.2 -2.0 95 115-226 7-105 (138)
209 1b89_A Protein (clathrin heavy 97.6 1E-05 3.5E-10 87.2 1.3 105 104-227 123-254 (449)
210 4b4t_Q 26S proteasome regulato 97.6 1.1E-06 3.9E-11 92.1 -7.2 134 103-239 55-200 (434)
211 3bee_A Putative YFRE protein; 97.4 9.2E-06 3.1E-10 68.6 -1.9 71 100-179 3-76 (93)
212 3mv2_B Coatomer subunit epsilo 97.3 3.4E-05 1.2E-09 79.5 -0.2 134 83-229 114-270 (310)
213 1b89_A Protein (clathrin heavy 97.2 2.5E-05 8.4E-10 84.3 -2.5 71 148-231 124-194 (449)
214 3qwp_A SET and MYND domain-con 97.2 3.8E-05 1.3E-09 82.8 -1.7 95 98-193 324-426 (429)
215 3qww_A SET and MYND domain-con 97.0 5.4E-05 1.9E-09 81.7 -2.2 77 98-175 335-411 (433)
216 3ly7_A Transcriptional activat 97.0 0.00026 8.9E-09 74.5 2.8 172 22-203 179-368 (372)
217 1nzn_A CGI-135 protein, fissio 96.9 0.00011 3.7E-09 65.7 -0.5 99 82-188 14-116 (126)
218 3o48_A Mitochondria fission 1 96.8 0.00027 9.2E-09 63.4 0.9 82 148-229 42-127 (134)
219 1y8m_A FIS1; mitochondria, unk 96.5 0.00063 2.2E-08 61.8 0.9 82 148-229 41-126 (144)
220 3ffl_A Anaphase-promoting comp 96.3 0.00021 7.2E-09 66.6 -3.0 102 105-206 22-148 (167)
221 3o48_A Mitochondria fission 1 96.3 0.0008 2.7E-08 60.4 0.6 102 81-191 19-123 (134)
222 3u64_A Protein TP_0956; tetrat 96.0 0.0015 5.1E-08 66.4 0.8 115 56-179 138-273 (301)
223 1y8m_A FIS1; mitochondria, unk 96.0 0.0016 5.4E-08 59.1 0.8 99 81-188 18-119 (144)
224 4h7y_A Dual specificity protei 95.1 0.0019 6.6E-08 59.1 -1.9 119 105-228 15-139 (161)
225 4e6h_A MRNA 3'-END-processing 95.0 0.004 1.4E-07 70.8 -0.1 130 89-227 329-482 (679)
226 4e6h_A MRNA 3'-END-processing 93.4 0.013 4.5E-07 66.6 -0.3 118 103-228 434-555 (679)
227 2ff4_A Probable regulatory pro 93.4 0.007 2.4E-07 64.0 -2.5 104 104-207 116-232 (388)
228 3ffl_A Anaphase-promoting comp 92.6 0.021 7.2E-07 53.1 -0.0 88 102-190 62-165 (167)
229 1ya0_A SMG-7 transcript varian 89.2 0.056 1.9E-06 59.1 -0.9 80 148-227 154-233 (497)
230 2uy1_A Cleavage stimulation fa 87.9 0.057 1.9E-06 58.8 -1.9 129 89-219 199-359 (493)
231 4b4t_R RPN7, 26S proteasome re 83.6 0.094 3.2E-06 56.0 -2.9 104 100-209 128-237 (429)
232 4gns_B Protein CSD3, chitin bi 83.0 0.19 6.5E-06 57.5 -0.8 56 152-207 343-398 (754)
233 2lnm_A Protein TIC 40, chlorop 77.2 2.2 7.6E-05 32.7 3.8 19 484-502 37-55 (62)
234 1zbp_A Hypothetical protein VP 76.7 0.57 1.9E-05 46.9 0.3 65 156-220 7-71 (273)
235 2llw_A Heat shock protein STI1 74.5 4.8 0.00016 31.8 5.1 41 483-531 21-61 (71)
236 4gns_B Protein CSD3, chitin bi 74.3 0.57 1.9E-05 53.6 -0.4 60 103-171 337-396 (754)
237 4b4t_S RPN3, 26S proteasome re 74.2 1.2 4.1E-05 48.6 2.1 56 160-215 245-305 (523)
238 1ya0_A SMG-7 transcript varian 70.3 0.77 2.6E-05 50.0 -0.5 80 104-192 153-232 (497)
239 2uy1_A Cleavage stimulation fa 70.2 1 3.4E-05 48.8 0.4 112 104-229 287-399 (493)
240 2llw_A Heat shock protein STI1 69.2 3.6 0.00012 32.5 3.3 30 385-416 28-63 (71)
241 3lvg_A Clathrin heavy chain 1; 68.4 0.49 1.7E-05 51.4 -2.5 102 106-226 147-275 (624)
242 4g26_A Pentatricopeptide repea 63.8 1.6 5.4E-05 47.4 0.3 108 103-222 105-218 (501)
243 3txn_A 26S proteasome regulato 63.5 0.61 2.1E-05 49.3 -3.0 97 108-207 104-208 (394)
244 3kae_A CDC27, possible protein 61.9 0.72 2.5E-05 43.1 -2.4 101 105-219 35-153 (242)
245 2lnm_A Protein TIC 40, chlorop 54.9 12 0.0004 28.6 3.8 42 483-532 13-54 (62)
246 4fhn_B Nucleoporin NUP120; pro 52.6 1.1 3.8E-05 53.7 -3.6 103 102-204 841-962 (1139)
247 1qsa_A Protein (soluble lytic 52.5 8.6 0.00029 42.9 3.8 95 104-208 253-347 (618)
248 3mkq_A Coatomer beta'-subunit; 48.0 3.3 0.00011 46.4 -0.6 31 101-131 679-709 (814)
249 2ff4_A Probable regulatory pro 47.9 3.9 0.00013 42.7 0.0 71 178-248 169-239 (388)
250 2crb_A Nuclear receptor bindin 47.8 4 0.00014 33.9 0.1 30 178-207 13-42 (97)
251 1zbp_A Hypothetical protein VP 44.5 5.2 0.00018 39.9 0.3 116 84-212 12-132 (273)
252 3mkq_B Coatomer subunit alpha; 43.7 2.5 8.5E-05 39.6 -2.0 86 101-208 32-117 (177)
253 2v6y_A AAA family ATPase, P60 41.8 9.8 0.00034 30.8 1.6 31 102-132 10-40 (83)
254 2w2u_A Hypothetical P60 katani 41.5 11 0.00037 30.6 1.7 31 102-132 18-48 (83)
255 2llv_A Heat shock protein STI1 40.8 15 0.00051 28.8 2.4 38 483-520 24-70 (71)
256 1p58_D Envelope protein M; fla 38.8 13 0.00046 29.6 1.8 20 556-575 28-47 (75)
257 2crb_A Nuclear receptor bindin 37.6 14 0.00046 30.7 1.7 30 103-132 15-44 (97)
258 4a5x_A MITD1, MIT domain-conta 35.4 15 0.0005 30.0 1.7 30 103-132 16-45 (86)
259 2cpt_A SKD1 protein, vacuolar 35.2 13 0.00044 32.2 1.3 31 102-132 17-47 (117)
260 2v6x_A Vacuolar protein sortin 33.8 16 0.00053 29.5 1.6 31 102-132 12-42 (85)
261 1wfd_A Hypothetical protein 15 32.9 17 0.00057 30.0 1.6 31 102-132 14-44 (93)
262 4g26_A Pentatricopeptide repea 31.9 8.1 0.00028 41.8 -0.7 91 113-212 80-174 (501)
263 4b4t_S RPN3, 26S proteasome re 29.9 13 0.00045 40.4 0.6 114 99-217 266-381 (523)
264 3hd7_B Syntaxin-1A; membrane p 29.1 17 0.00058 30.9 1.1 18 567-584 84-101 (109)
265 3txn_A 26S proteasome regulato 26.9 5.4 0.00019 42.0 -3.0 73 151-223 104-185 (394)
266 3mkq_B Coatomer subunit alpha; 25.2 19 0.00063 33.6 0.6 46 157-207 16-61 (177)
267 3ax2_A Mitochondrial import re 25.0 25 0.00084 27.9 1.2 30 106-135 20-49 (73)
268 4b4t_R RPN7, 26S proteasome re 24.7 20 0.00067 37.8 0.8 78 146-223 131-213 (429)
269 3j27_B Matrix protein, small e 24.5 28 0.00097 27.7 1.5 22 556-577 28-49 (75)
270 1oyz_A Hypothetical protein YI 23.7 2.9E+02 0.0098 26.0 9.1 9 13-21 147-155 (280)
271 3ax2_A Mitochondrial import re 23.4 27 0.00091 27.7 1.1 38 185-222 22-59 (73)
272 3hd7_A Vesicle-associated memb 23.1 25 0.00087 28.9 1.0 22 538-559 33-54 (91)
273 3mv2_A Coatomer subunit alpha; 22.5 6.4 0.00022 40.2 -3.3 109 104-213 115-240 (325)
274 2vkj_A TM1634; membrane protei 20.2 50 0.0017 27.2 2.1 33 101-133 51-83 (106)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.75 E-value=6.2e-20 Score=164.46 Aligned_cols=117 Identities=19% Similarity=0.291 Sum_probs=112.3
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP 177 (591)
.+|+.++.++++|+.+++.|+|++|+.+|.++|+++|.++. +|+|+|.||+++|+|++|+.+|+++|+++|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------LYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 46777899999999999999999999999999999999876 899999999999999999999999999999
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
+++.+|+++|.+|..+|++++|+.+|+++++++|++.+++..|+.+
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988876
No 2
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=4e-19 Score=166.48 Aligned_cols=126 Identities=16% Similarity=0.225 Sum_probs=114.1
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceee-----eeeccccceeeeccccchhhhhhcceeeec-
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-----LACSLNSMSCYLKTKQYDECIKVGSEVLAY- 175 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~-----~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l- 175 (591)
.+..++++|+.+++.|+|++|+.+|++||+++|.++..+ .+. ..+|+|+|.|+.++|+|++|+.+|++||++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999965432 121 238999999999999999999999999999
Q ss_pred ------cccchHHH----HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 176 ------DAKNVKAL----YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 176 ------dP~~~~a~----~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+|+++++| |++|.+|..+|+|++|+.+|++|++++|++..+...+..+++.+..
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999888888888777754
No 3
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.67 E-value=3.6e-18 Score=157.62 Aligned_cols=135 Identities=25% Similarity=0.336 Sum_probs=116.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhcccc--------ccc-cccceeeeeeccccceeeeccccchhhhhhc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG--------IHS-SEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~--------~~~-~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~ 169 (591)
..+.+..++.+|+.+++.|+|++|+.+|.++|.+.+. ++. ....+....+|+|+|.||+++|+|++|+.+|
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4566889999999999999999999999999998322 110 0001223458999999999999999999999
Q ss_pred ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhccCC
Q 007725 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 170 ~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~-~a~~~L~~a~~~l~~~~~a 233 (591)
+++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++. .+...|..++..+.+...+
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 7899999999988776544
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=8.4e-18 Score=163.71 Aligned_cols=194 Identities=13% Similarity=0.050 Sum_probs=159.1
Q ss_pred Chh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccc
Q 007725 36 NPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL 113 (591)
Q Consensus 36 ~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~ 113 (591)
+++ +...+...++..+.++....+++.....|+.......... ....++++.+...+++.+...++.+..+..+|..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 444 4444666667778888888888888888887777665422 22344677788999999999999999999999999
Q ss_pred ccc-----------ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 114 YSE-----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 114 ~~~-----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
... |++++|+..|.++++++|.++. +|+++|.+|..+|++++|+..|+++++++ +++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP---------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 999 9999999999999999998865 79999999999999999999999999999 99999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
++++|.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++...++.
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888888777665543
No 5
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=8.9e-18 Score=154.49 Aligned_cols=138 Identities=6% Similarity=-0.038 Sum_probs=126.8
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
...+++.+...++......++.+..++.+|.+|++.|+|++|+.+|.++|+++|.++. +|+++|.||.+.|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------AHRFLGLLYELEE 79 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTT
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcC
Confidence 3457788888889999999999999999999999999999999999999999999876 8999999999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhh-cccccccCCCCChHHHHHhHHHHHh
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD-LSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~-lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
++++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.. +++|++++|+++.++..+..+....
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5999999999999988887776544
No 6
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=3.3e-17 Score=152.25 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=113.0
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
+-.....+.+.+...++.+..++.+|..+++.|+|++|+.+|++++.++|.++. +|+++|.||..+|+|++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------YIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHccHHH
Confidence 334446677778889999999999999999999999999999999999999876 89999999999999999
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999864
No 7
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.5e-17 Score=144.14 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=111.8
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
..+..++.+|+.+++.|+|++|+..|.+++.+.|.++. +|+++|.||+++|+|++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 35678999999999999999999999999999998865 899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhHHHHHh
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDAKEIL 227 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~------P~~~~a~~~L~~a~~~l 227 (591)
.+|+++|.+|..+|++++|+.+|+++++++ |++..++..+..++.++
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 99999999999887764
No 8
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=3.7e-17 Score=146.18 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=102.1
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
.+.+.+++++|+.+++.|+|++|+.+|.++|+++|.++. +|+|+|.||+++|+|++|+.+|+++|+++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~---------~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---------FYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 345778999999999999999999999999999998865 89999999999999999999999999999976
Q ss_pred -------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 180 -------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 180 -------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
+++|+++|.++..+|++++|+.+|++++.++|+ +++...|..+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 468999999999999999999999999999885 4555555443
No 9
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=6.4e-17 Score=185.93 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=151.9
Q ss_pred ChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccccee
Q 007725 66 PPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTL 144 (591)
Q Consensus 66 ~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l 144 (591)
.|++.+++.... .....++++.|...|+++++.+++.+.++.++|+.|.+.|+|++|+.+|+++|+++|+++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~------ 78 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------ 78 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 355555544431 2223346778999999999999999999999999999999999999999999999999876
Q ss_pred eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725 145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (591)
Q Consensus 145 ~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~ 224 (591)
+|+|+|.+|.++|+|++|++.|++||+++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..|+.+.
T Consensus 79 ---a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 79 ---AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCccchHHHHHH
Q 007725 225 EILMKEDGHHGPRGLLIEEITE 246 (591)
Q Consensus 225 ~~l~~~~~a~~~~~~~i~e~~e 246 (591)
..+++..++.+.+++.++-..+
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhChh
Confidence 9999998888777777654333
No 10
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.59 E-value=9.3e-17 Score=147.59 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=119.4
Q ss_pred hhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcc
Q 007725 91 RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS 170 (591)
Q Consensus 91 ~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~ 170 (591)
.+.+.+...++.+..++.+|..++..|+|++|+..|.+++.++|.++. +|+++|.||..+|+|++|+..|+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------FFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------HHHHHHHHHHHHhhHHHHHHHHH
Confidence 344556667788889999999999999999999999999999999876 79999999999999999999999
Q ss_pred eeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 171 ~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
+++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.....+..+...+...+.
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998887777777777655443
No 11
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.57 E-value=1.7e-16 Score=146.63 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=111.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
....+..++.+|..++..|+|++|+.+|.+++.++|.++. +|+++|.||+++|+|++|+.+|+++|+++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---------YLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999999999999999998865 8999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh--HHHHHhHHHHHhhh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKEILMK 229 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~--a~~~L~~a~~~l~~ 229 (591)
++.+|+++|.+|..+|++++|+.+|+++++++|++.. +...+..++.++.+
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 44555555555543
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=1.6e-16 Score=143.90 Aligned_cols=130 Identities=13% Similarity=0.119 Sum_probs=117.7
Q ss_pred hhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcc
Q 007725 91 RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS 170 (591)
Q Consensus 91 ~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~ 170 (591)
.+.+.+...++.+..++.+|..++..|+|++|+..|.+++.++|.++. +|+++|.||.++|+|++|+..|+
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------YFLGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHHhhHHHHHHHHH
Confidence 355566677888889999999999999999999999999999998876 79999999999999999999999
Q ss_pred eeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 171 ~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.....+..+...+..
T Consensus 77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888777777766654
No 13
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=1.1e-16 Score=166.99 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=134.1
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc------ccceeeeeeccccceeeeccc
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~Nla~~y~~lg 160 (591)
.+...+...+...+..+..++.+|+.+++.|+|++|+.+|.+++.+.|.++.. +..++...+|+|+|.||+++|
T Consensus 131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g 210 (336)
T 1p5q_A 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210 (336)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444555556678889999999999999999999999999999999987410 011122358999999999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC-CCCccc
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH-HGPRGL 239 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a-~~~~~~ 239 (591)
+|++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++...+ ...++.
T Consensus 211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887655 334555
Q ss_pred hHHHHHH
Q 007725 240 LIEEITE 246 (591)
Q Consensus 240 ~i~e~~e 246 (591)
.+....+
T Consensus 291 ~~~~~~~ 297 (336)
T 1p5q_A 291 MFERLAE 297 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 5544433
No 14
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=2.1e-16 Score=171.93 Aligned_cols=145 Identities=23% Similarity=0.378 Sum_probs=122.1
Q ss_pred HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeeccccceeeecccc
Q 007725 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
+...+.......+..+..++++|+.+++.|+|.+|+.+|.+||.++|.++. .+...+...+|+|+|.||+++++
T Consensus 253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 332 (457)
T 1kt0_A 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 332 (457)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444555567788999999999999999999999999999999888731 00111224589999999999999
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
|++|+.+|+++|+++|+++++||++|.+|..+|+|++|+.+|++|++++|++..++..++.+...++++..
T Consensus 333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877653
No 15
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=6.4e-16 Score=149.70 Aligned_cols=190 Identities=12% Similarity=0.114 Sum_probs=152.5
Q ss_pred Chh-HHHHhhhhhccCCCchhhhhhhhhcCCCh-hHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccc
Q 007725 36 NPE-LMRIATENMKNMRPEDLKCAAEQLTHTPP-EEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNE 112 (591)
Q Consensus 36 ~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~p-ee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~ 112 (591)
||+ +...+...+...+.++....+++.....| .+....... ......++++.+...+...+...+..+..+..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 344 55556666677777777766666555444 333333332 122234467788889999999999999999999999
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc--chHHHHHhccch
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAY 190 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al 190 (591)
++..|+|++|+..|.+++.+.|.++. ....+..+|.++|.+|...|+|++|+..|+++|+++|+ ++.+|+++|.+|
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 99999999999999999999998762 00111236999999999999999999999999999999 999999999999
Q ss_pred hhhhhH---------------------------HHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 191 KDIGRL---------------------------EEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 191 ~~lg~~---------------------------eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
...|+. ++|+.+|+++++++|++..+...+..++..+
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 999999 9999999999999999999999888876543
No 16
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.53 E-value=5.4e-16 Score=147.73 Aligned_cols=150 Identities=27% Similarity=0.391 Sum_probs=125.1
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc-------ceeeeeeccccceeee
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-------RTLLLACSLNSMSCYL 157 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~-------~~l~~~~~~Nla~~y~ 157 (591)
++.++..+.......++.+..++.+|+.++..|+|++|+.+|.+++.+.|.++.... ..+...+|+|+|.||+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 99 (198)
T 2fbn_A 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99 (198)
T ss_dssp --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444456677889999999999999999999999999999888762100 0001248999999999
Q ss_pred ccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 234 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~ 234 (591)
++|+|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++..+..
T Consensus 100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887765543
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=4e-16 Score=151.76 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=138.4
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc---
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--- 159 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l--- 159 (591)
++++.+...+.+.+...++.+..+..+|..++..|++++|+..|+++++++|.++. +|+++|.+|...
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---------GYMVLSEAYVALYRQ 89 (217)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhhhh
Confidence 35667888888999999999999999999999999999999999999999999866 799999999999
Q ss_pred --------ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 160 --------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 160 --------g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++ +++.++..++.+...+++.+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999998877
Q ss_pred CCCCCccchH
Q 007725 232 GHHGPRGLLI 241 (591)
Q Consensus 232 ~a~~~~~~~i 241 (591)
++...++..+
T Consensus 169 ~A~~~~~~al 178 (217)
T 2pl2_A 169 EALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666555
No 18
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=6e-16 Score=177.87 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=125.7
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.|+.++++.++|+.+.+.|+|++|+.+|++||+++|+++. +|+|+|.+|.++|+|++|+..|++||+++|+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5778999999999999999999999999999999999866 8999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++.+|+++|.+|..+|++++|+++|++|++++|++..++.+|+.+...+++.+++...+++.+
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887766665555
No 19
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=1.1e-15 Score=159.54 Aligned_cols=145 Identities=30% Similarity=0.414 Sum_probs=98.4
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------ccceeeeeeccccceeeeccccchhhhhh
Q 007725 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTLLLACSLNSMSCYLKTKQYDECIKV 168 (591)
Q Consensus 97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l~~~~~~Nla~~y~~lg~y~eAi~~ 168 (591)
...++.+..++.+|+.+++.|+|.+|+.+|.+++.+.|.+... ....+...+|+|+|.||+++++|++|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456678899999999999999999999999999998876410 00011123799999999999999999999
Q ss_pred cceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh-ccCCCCCccchH
Q 007725 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK-EDGHHGPRGLLI 241 (591)
Q Consensus 169 ~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~-~~~a~~~~~~~i 241 (591)
|+++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..|..+...... .+.+...+...+
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999988655443 334444454444
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.5e-15 Score=162.02 Aligned_cols=156 Identities=7% Similarity=-0.089 Sum_probs=137.4
Q ss_pred CCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-chhHHHHHHHhhhcccccccccc
Q 007725 64 HTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSSEG 141 (591)
Q Consensus 64 ~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~-y~eAi~~Y~kAL~l~p~~~~~e~ 141 (591)
...|+....+....... ..+.++.+...+.+.+..+++...++..+|.++...|+ |++|+.+|.++|.++|.++.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~--- 167 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ--- 167 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---
Confidence 34566666554442111 22346678888999999999999999999999999997 99999999999999999876
Q ss_pred ceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725 142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (591)
Q Consensus 142 ~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~ 221 (591)
+|+++|.||..+|+|++|+.+|+++|+++|++..+|++||.++..+|++++|+.+|+++++++|++..++..++
T Consensus 168 ------a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg 241 (382)
T 2h6f_A 168 ------VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 241 (382)
T ss_dssp ------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 007725 222 DAKEILM 228 (591)
Q Consensus 222 ~a~~~l~ 228 (591)
.+...+.
T Consensus 242 ~~l~~l~ 248 (382)
T 2h6f_A 242 FVISNTT 248 (382)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9988843
No 21
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.48 E-value=2e-15 Score=138.61 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=106.1
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (591)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg 187 (591)
.+|..+..+|++++|+..|.+++...|..+. .++++|.||++.|+|++|++.|+++|+++|+++.+|+++|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT---------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4789999999999999999999999888765 6889999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 188 ~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
.+|..+|++++|+.+|+++++++|++..++..++.+....++..++
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999999999999999999999998888765543
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.4e-15 Score=160.42 Aligned_cols=173 Identities=10% Similarity=-0.033 Sum_probs=150.6
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHH-HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHH
Q 007725 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEE-IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 124 (591)
Q Consensus 47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~-~~~e-~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~ 124 (591)
.+..+.++....++++....|.....+..+.... .... ++.+...+.+.+..+++.+..|.++|.++...|+|++|+.
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 3455677777778888788888887776663222 2333 7789999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh-hhhHHHH----
Q 007725 125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD-IGRLEEA---- 199 (591)
Q Consensus 125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~-lg~~eeA---- 199 (591)
+|.++|.++|.+.. +|+|+|.||.++|+|++|+.+|+++|+++|++..+|++||.+|.. .|++++|
T Consensus 188 ~~~kal~ldP~~~~---------a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~ 258 (382)
T 2h6f_A 188 FIADILNQDAKNYH---------AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER 258 (382)
T ss_dssp HHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred HHHHHHHhCccCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 99999999999876 899999999999999999999999999999999999999999999 5555888
Q ss_pred -hhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 200 -VSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 200 -l~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
+.+|++|+.++|++..++..++.+....+
T Consensus 259 el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 259 EVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 59999999999999999999998876643
No 23
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.46 E-value=2.4e-15 Score=133.08 Aligned_cols=122 Identities=26% Similarity=0.341 Sum_probs=112.5
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.+..+..++.+|..++..|+|++|+.+|.+++.+.|.++. +|+++|.||+.+|+|++|+..|+++++++|+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 3455778999999999999999999999999999998765 8999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCC-----CChHHHHHhHHHHHhhh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-----DGTIADVLRDAKEILMK 229 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~-----~~~a~~~L~~a~~~l~~ 229 (591)
++.+|+++|.+|..+|++++|+.+|++++.++|+ +..+...+..++.....
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 78888888888776643
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=2.2e-15 Score=140.72 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=127.4
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.|...+++.++.+++.+..+..+|.+++..|++++|+..|.+++...|.++. ++.+++.++...+++
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---------AYYILGSANFMIDEK 89 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------HHHHHHHHHHHcCCH
Confidence 35667778888888888888888888888888889999999888888888887755 678888888888888
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+.|+..+.+++.++|.+..+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.+++...+++.+
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8899888888888888888888899999889999999999999998888888888888888888888777766666655
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.8e-15 Score=141.26 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=138.1
Q ss_pred HHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc
Q 007725 41 RIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF 119 (591)
Q Consensus 41 r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~-~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y 119 (591)
..+.-.....+.++....+++.....|+........... ...++++.+...+.......+.....+...|..+...+++
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence 334444455666777777777766777776665554211 1234566677778888888888999999999999999999
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHH
Q 007725 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199 (591)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeA 199 (591)
+.|+..|.+++.+.|.++. ++.++|.+|.++|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|
T Consensus 90 ~~a~~~~~~a~~~~~~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYAD---------AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCccchH---------HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998865 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCC
Q 007725 200 VSDLSNAHEVSPDDG 214 (591)
Q Consensus 200 l~~lekAl~l~P~~~ 214 (591)
+.+|++|++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999763
No 26
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=1.1e-14 Score=166.27 Aligned_cols=170 Identities=13% Similarity=-0.013 Sum_probs=142.5
Q ss_pred hccCCCchhhhhhhhhc--------CCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725 47 MKNMRPEDLKCAAEQLT--------HTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (591)
Q Consensus 47 m~~~~pe~~~~a~e~l~--------~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g 117 (591)
+...++++....+++.. ...|+.......+. .....++++.|...+++.+..+++.+..+..+|..++..|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 44455555555555554 45555555444432 2223445778889999999999999999999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHH
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 197 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~e 197 (591)
+|++|+..|+++++++|+++. +|+|+|.||.++|+|++ +..|++||+++|+++.+|+++|.+|..+|+++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~---------~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELA---------PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999866 89999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 198 EAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 198 eAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+|+.+|+++++++|++..++..++.+...
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999999999999999999888887543
No 27
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-14 Score=126.35 Aligned_cols=121 Identities=20% Similarity=0.272 Sum_probs=113.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.+..+..++.+|..++..|+|++|+.+|.+++...|.++. +++++|.||...|+|++|+..|+++++++|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---------LYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999999999999999888755 7999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
++.+++++|.+|..+|++++|+.+|++++.++|.+..++..++.+....+
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998876653
No 28
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=8.1e-15 Score=159.97 Aligned_cols=182 Identities=12% Similarity=-0.003 Sum_probs=151.9
Q ss_pred hhhhhccCCC-chhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc----
Q 007725 43 ATENMKNMRP-EDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE---- 116 (591)
Q Consensus 43 A~e~m~~~~p-e~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~---- 116 (591)
+.-.+...+. ++....+++.....|.....+.... .....++++.|...+++.+...++ ...+..+|..++..
T Consensus 109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC
Confidence 3334444555 6666666665555666555544432 112234577788889999988888 69999999999999
Q ss_pred -----ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc--------ccchhhhhhcceeeeccc---cch
Q 007725 117 -----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDA---KNV 180 (591)
Q Consensus 117 -----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l--------g~y~eAi~~~~~AL~ldP---~~~ 180 (591)
|+|++|+.+|.+++++.|.++. +|+++|.+|..+ |+|++|+..|+++++++| +++
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMDVLDGR---------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence 9999999999999999998865 899999999999 999999999999999999 999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 234 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~ 234 (591)
.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++..++.
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888766543
No 29
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.43 E-value=7.3e-15 Score=155.75 Aligned_cols=133 Identities=27% Similarity=0.482 Sum_probs=115.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------cccceeeeeeccccceeeeccccchhhhhhcce
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~ 171 (591)
..+.+..++.+|+.+++.|+|++|+.+|+++|++.+..+. ....+....+|+|+|.||+++++|++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4556778999999999999999999999999995433210 001122345899999999999999999999999
Q ss_pred eeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 172 AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
+|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..++..|..++..+++.+
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887654
No 30
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=2.7e-14 Score=137.86 Aligned_cols=130 Identities=9% Similarity=0.027 Sum_probs=96.9
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 118 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~ 118 (591)
++..+...+...+.++....+++.....|+........-.. ...........++|.++++.|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----------------KNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----------------TTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----------------chhhhhHHHHHHHHHHHHHCCC
Confidence 45556666666666666666665555555554443321000 0011122334559999999999
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 194 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg 194 (591)
|++|+..|.++|+++|.++. +|+++|.||...|+|++|+.+|+++|+++|+++.+|+++|.+|+..+
T Consensus 70 ~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVD---------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999876 89999999999999999999999999999999999999988875543
No 31
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=1.4e-14 Score=139.89 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=109.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccc----------------cceeeeccccchhhh
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN----------------SMSCYLKTKQYDECI 166 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N----------------la~~y~~lg~y~eAi 166 (591)
+..+..+|..++..|+|++|+.+|.+++.++|.++. +|++ +|.||.+.|+|++|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---------MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 557888999999999999999999999999998865 6777 999999999999999
Q ss_pred hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+....+
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999876554
No 32
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=2.3e-14 Score=121.71 Aligned_cols=115 Identities=23% Similarity=0.275 Sum_probs=108.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+..++.+|..++..|+|++|+..|.+++...|.++. ++.++|.||...|+|++|+..|+++++++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 73 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH
Confidence 4678899999999999999999999999999888765 7899999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
+++++|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999888887754
No 33
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.40 E-value=1.5e-14 Score=128.18 Aligned_cols=102 Identities=8% Similarity=-0.037 Sum_probs=91.6
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.++.+|..+++.|+|++|+..|++++.++|.++. +|+++|.||...|++++|+..|+++++++|+++.+++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 89 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4678899999999999999999999999999876 8999999999999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
++|.+|..+|++++|+..|+++++++|++..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999998754
No 34
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.39 E-value=3.4e-14 Score=122.73 Aligned_cols=123 Identities=25% Similarity=0.244 Sum_probs=115.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.+..+..++.+|..++..|+|++|+..|.+++...|.++. ++.++|.||...|+|++|+..|.++++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---------YFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 4556788999999999999999999999999999887754 7899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
++.+++.+|.++..+|++++|+.+|++++.++|++..++..++.+...+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998887653
No 35
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=2.7e-14 Score=138.11 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=124.7
Q ss_pred HHHHHHHHhhhhcccccc-hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725 83 EEIATMRARIDAQMNYEF-NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~-~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
++++.+...+.+.+...+ .....+..+|.+++..|+|++|+.+|.+++.+.|.++. +|.++|.||..+|+
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---------AYIGKSAAYRDMKN 91 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---------HHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---------HHHHHHHHHHHccc
Confidence 356677777888877776 66778888999999999999999999999999998765 79999999999999
Q ss_pred chhhhhhcceeeeccccch-------HHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhhh
Q 007725 162 YDECIKVGSEVLAYDAKNV-------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMK 229 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~-------~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~l~~ 229 (591)
|++|+..|+++++++|++. .+|+++|.++..+|++++|+.+|+++++++|+ +..++..++.+....++
T Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 77999999999999999999999999999999 88999999998877654
No 36
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-14 Score=126.68 Aligned_cols=122 Identities=31% Similarity=0.471 Sum_probs=110.3
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP 177 (591)
..+..+..++.+|..++..|+|++|+.+|.+++.+.|.++. ...+|+++|.||+..++|++|+..|+++++++|
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 34566788999999999999999999999999999887521 133799999999999999999999999999999
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+..
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998888877643
No 37
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.6e-14 Score=157.70 Aligned_cols=170 Identities=11% Similarity=0.068 Sum_probs=146.1
Q ss_pred hcCCChhHHHHHHHH-hhcCChHHH-HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc
Q 007725 62 LTHTPPEEVAEIGEK-LANASPEEI-ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS 139 (591)
Q Consensus 62 l~~~~pee~~a~~~k-~~~~~~~e~-~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~ 139 (591)
+....|.....+..+ .......++ +.|...+.+.++..+..+..+..+|.+++..|+|++|+.+|.+++++.|. +.
T Consensus 94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~- 171 (474)
T 4abn_A 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV- 171 (474)
T ss_dssp HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH-
T ss_pred HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH-
Confidence 344445444444443 222234456 78888899999999999999999999999999999999999999999887 33
Q ss_pred ccceeeeeeccccceeeecc---------ccchhhhhhcceeeeccccchHHHHHhccchhhh--------hhHHHHhhh
Q 007725 140 EGRTLLLACSLNSMSCYLKT---------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------GRLEEAVSD 202 (591)
Q Consensus 140 e~~~l~~~~~~Nla~~y~~l---------g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l--------g~~eeAl~~ 202 (591)
+|.++|.+|..+ |+|++|+..|+++++++|+++.+|+++|.+|..+ |++++|+.+
T Consensus 172 --------~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 172 --------SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp --------HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 799999999999 9999999999999999999999999999999999 999999999
Q ss_pred cccccccCC---CCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 203 LSNAHEVSP---DDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 203 lekAl~l~P---~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
|+++++++| ++..++..++.+...++++.++...++..+
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999 999999999999999988777666655544
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=2.9e-14 Score=140.35 Aligned_cols=194 Identities=15% Similarity=0.028 Sum_probs=141.7
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccc--cch-HHHHHHHhccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNY--EFN-AAKMLKKQGNELY 114 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~--~~~-~a~~lk~~Gn~~~ 114 (591)
+++.|...+...+.++....+++.....|.......... .....++++.+...++..+.. .+. .+..+..+|..+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 444455555555566655555555444444332222211 111223445566555555551 222 2556899999999
Q ss_pred ccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725 115 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 194 (591)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg 194 (591)
..|+|++|+.+|.+++.+.|.++. +|.++|.||...|+|++|+..|+++++++|.++.+|+++|..++..+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLD---------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999998765 79999999999999999999999999999999999999994444445
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh---ccCCCCCccchH
Q 007725 195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK---EDGHHGPRGLLI 241 (591)
Q Consensus 195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~---~~~a~~~~~~~i 241 (591)
++++|+.+|+++++++|++..++..++.+...+++ ...+...++..+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999888876 344444444444
No 39
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=1.1e-13 Score=137.19 Aligned_cols=190 Identities=12% Similarity=0.054 Sum_probs=151.9
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhH---HHHHHHHh-hcCChHHHHHHHHhhhhcccccc---hHHHHHHHhcc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEE---VAEIGEKL-ANASPEEIATMRARIDAQMNYEF---NAAKMLKKQGN 111 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee---~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~---~~a~~lk~~Gn 111 (591)
+...+...++..+.++....++++....|.. ........ .....+++..|...++..+...+ ....+++.+|.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 6666888888888888888888887776655 44443331 22234456778888888877644 56789999999
Q ss_pred cccc--------cccchhHHHHHHHhhhccccccccccceeeeeec--------------cccceeeeccccchhhhhhc
Q 007725 112 ELYS--------EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS--------------LNSMSCYLKTKQYDECIKVG 169 (591)
Q Consensus 112 ~~~~--------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~--------------~Nla~~y~~lg~y~eAi~~~ 169 (591)
+++. .|+|++|+..|.+++...|.++.. ..++ +++|.||.+.|+|++|+..|
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV------DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999 999999999999999999987641 1122 78999999999999999999
Q ss_pred ceeeecccc---chHHHHHhccchhhh----------hhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhccCC
Q 007725 170 SEVLAYDAK---NVKALYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 170 ~~AL~ldP~---~~~a~~~rg~al~~l----------g~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~~~~a 233 (591)
+++++.+|+ ...+++++|.+|..+ |++++|+..|+++++.+|+++ .+...+..+...+++.++.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999998 678999999999987 999999999999999999986 4566677777777666554
Q ss_pred C
Q 007725 234 H 234 (591)
Q Consensus 234 ~ 234 (591)
.
T Consensus 252 ~ 252 (261)
T 3qky_A 252 A 252 (261)
T ss_dssp T
T ss_pred h
Confidence 3
No 40
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=2.9e-14 Score=147.23 Aligned_cols=203 Identities=9% Similarity=-0.030 Sum_probs=151.4
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g 117 (591)
++..+...++..+.++....++++....|........... ....++++.+...+++.+...+..+..+..+|..+...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 4555666666667777777777766666666555444321 112345677888888888888999999999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccce-eeeeeccccceeeeccccchhhhhhcceeeecccc--chHHHHHhccchhhhh
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEGRT-LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIG 194 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~-l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg 194 (591)
+|++|+..|.+++.+.|.++...... ....++.+++.+|...|++++|+..|+++++++|+ ++.+++++|.+|..+|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 99999999999999988875411000 01234456699999999999999999999999999 8999999999999999
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++++|+..|+++++++|++..++..++.+....++..++...++..+
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887776665555544
No 41
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=1.1e-14 Score=152.02 Aligned_cols=145 Identities=15% Similarity=0.070 Sum_probs=102.1
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
++.+...+...+...+..+..+..+|..+++.|+|++|+.+|.+++.+.|.+.. +|++++.+|.+.|++++
T Consensus 49 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID---------GYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHSCSSH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH---------HHHHHHHHHHHcCCHHH
Confidence 344555555555666667777777777777777777777777777777766644 57777777777777777
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
|+..|+++++++|++..+++.+|.++..+|++++|+..|++++.++|++..++..++.+....++...+...++
T Consensus 120 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777666655444433333
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=3.1e-14 Score=137.20 Aligned_cols=193 Identities=13% Similarity=0.024 Sum_probs=149.0
Q ss_pred HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725 40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 118 (591)
Q Consensus 40 ~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~ 118 (591)
...+...+...+.++....++++....|........... .....+++.+...++..+...+.....+..+|..++..|+
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 334555556667777777777776666665555444321 1123456677888888888888889999999999999999
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHH
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE 198 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ee 198 (591)
|++|+..|.+++.+.|.++. ++.+++.+|...|++++|+..|+++++++|++..+++.+|.++...|++++
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGD---------LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHH---------HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999887765 788999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 199 AVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 199 Al~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
|+..|++++.++|++..++..++.+....++...+...++..+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999999999999988887766655555444
No 43
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.35 E-value=7.1e-14 Score=120.91 Aligned_cols=120 Identities=21% Similarity=0.305 Sum_probs=110.6
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~- 179 (591)
+.+..+..+|..++..|+|++|+.+|.+++...|.++. +++++|.||...|+|++|+..|++++.++|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 34678899999999999999999999999999888754 78999999999999999999999999999988
Q ss_pred ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 180 ------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
+.+++++|.+|..+|++++|+.+|++++.++| +..++..+..+...+++.
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 688888999888877654
No 44
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=6.1e-14 Score=146.32 Aligned_cols=150 Identities=12% Similarity=0.055 Sum_probs=122.5
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.+...+.+.+...+..+..+..+|..+...|++++|+..|++++.+.|.++. +|.++|.+|...|+|
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD---------AYINLGNVLKEARIF 219 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCT
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHcCCH
Confidence 34556677777777777888888888888888888888888888888888887754 788888888888899
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++|+..|++++.++|+++.+++++|.+|...|++++|+..|+++++++|+++.++..++.+....++..++...++..+
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988888888898888888999999999999999999999988888888888888888877776665544444433
No 45
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.35 E-value=4.4e-14 Score=132.02 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=95.9
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch----------hhhhhcceeeeccccchHH
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD----------ECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~----------eAi~~~~~AL~ldP~~~~a 182 (591)
.-+.++|++|+.+|.++++++|.++. +|+|+|.|+..+++++ +||..|++||+++|++..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~ae---------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence 44667899999999999999999977 8999999999998865 9999999999999999999
Q ss_pred HHHhccchhhhh-----------hHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 183 LYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 183 ~~~rg~al~~lg-----------~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
||++|.+|..+| +|++|+.+|++|++++|++...+..+..+.+..
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence 999999999885 899999999999999999988887777765443
No 46
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.35 E-value=3.4e-14 Score=146.71 Aligned_cols=190 Identities=11% Similarity=0.023 Sum_probs=145.3
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHH----------hcc
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKK----------QGN 111 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~----------~Gn 111 (591)
+.-.....+.++....+++.....|........... ....++++.+...+.+.+...+.....+.. +|.
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 333444556666666666665555655444433311 112334566777777777766665555544 499
Q ss_pred cccccccchhHHHHHHHhhhcccc--ccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725 112 ELYSEGRFSNALQKYLLAKKNLQG--IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189 (591)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~--~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a 189 (591)
.+...|+|++|+.+|.+++.+.|. ++. +|+++|.+|...|+|++|+..|+++++++|+++.+|+++|.+
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPD---------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999988 543 789999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
|..+|++++|+..|+++++++|++..++..++.+...+++..++...++..+
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877776666655
No 47
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.34 E-value=4.2e-14 Score=145.25 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=135.1
Q ss_pred HHHHHHHHhhhhcccccch--HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 83 EEIATMRARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~--~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
++++.+...+...+...+. .+..+..+|..++..|+|++|+.+|.+++.+.|.++. +|+++|.+|...|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~g 265 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---------LWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHcC
Confidence 4566677777777777777 7889999999999999999999999999999888765 7899999999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC-----------ChHHHHHhHHHHHhhh
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----------GTIADVLRDAKEILMK 229 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~-----------~~a~~~L~~a~~~l~~ 229 (591)
+|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|++++.++|++ ..++..++.+...+++
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988 7899999999999988
Q ss_pred ccCCCCCccchHHHHH
Q 007725 230 EDGHHGPRGLLIEEIT 245 (591)
Q Consensus 230 ~~~a~~~~~~~i~e~~ 245 (591)
.+.+...+...++...
T Consensus 346 ~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 346 SDAYGAADARDLSTLL 361 (368)
T ss_dssp GGGHHHHHTTCHHHHH
T ss_pred hHhHHHhHHHHHHHHH
Confidence 7776555555554443
No 48
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=7.5e-14 Score=129.80 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=117.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee-eeccccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY 162 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~-y~~lg~y 162 (591)
+++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++. ++.++|.| |+..|+|
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---------LYAALATVLYYQASQH 95 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---------HHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCCc
Confidence 4455566666666677888899999999999999999999999999999998765 78999999 8899999
Q ss_pred --hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 163 --DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 163 --~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++.++|++......+..+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876665555443
No 49
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.33 E-value=6.4e-14 Score=127.08 Aligned_cols=125 Identities=21% Similarity=0.279 Sum_probs=111.7
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~ 179 (591)
.+.+..+..+|..++..|+|++|+..|.+++.+.|.++. +|+++|.||...|+|++|+..|+++++++|.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 345778999999999999999999999999999888765 79999999999999999999999999999999
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH--HHHhhhccCC
Q 007725 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGH 233 (591)
Q Consensus 180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a--~~~l~~~~~a 233 (591)
+.+|+++|.++..+|++++|+.+|++++.++|++..++..+..+ ....++.+++
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A 136 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 136 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777666 3344444443
No 50
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.32 E-value=8.6e-14 Score=139.73 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=135.8
Q ss_pred CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc
Q 007725 80 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159 (591)
Q Consensus 80 ~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l 159 (591)
....++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++...|.++. +|.++|.+|...
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~ 219 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATLANG 219 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHc
Confidence 34556777788888888888888899999999999999999999999999999888765 789999999999
Q ss_pred ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC------------CChHHHHHhHHHHHh
Q 007725 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------------DGTIADVLRDAKEIL 227 (591)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~------------~~~a~~~L~~a~~~l 227 (591)
|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++.++|+ +..++..++.+...+
T Consensus 220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999 678889999998888
Q ss_pred hhccCCCCCccchHHHH
Q 007725 228 MKEDGHHGPRGLLIEEI 244 (591)
Q Consensus 228 ~~~~~a~~~~~~~i~e~ 244 (591)
++.+.+...++..++..
T Consensus 300 g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 300 NRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TCHHHHHHHTTCCSHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 87766555555444433
No 51
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.32 E-value=1.5e-13 Score=150.38 Aligned_cols=129 Identities=20% Similarity=0.254 Sum_probs=115.0
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
+.+..++.+|+.+++.|+|++|+.+|++++++.|.++. +|+|+|.||.++|+|++|+.+|+++++++|+++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 44667899999999999999999999999999988765 899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH--HHHhhhccCCCCCcc
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGHHGPRG 238 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a--~~~l~~~~~a~~~~~ 238 (591)
.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ....++.+++...++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999988 555566666655544
No 52
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.32 E-value=4.3e-14 Score=142.11 Aligned_cols=200 Identities=8% Similarity=-0.072 Sum_probs=161.5
Q ss_pred HhhChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhc
Q 007725 33 MMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQG 110 (591)
Q Consensus 33 ~~~~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~G 110 (591)
+-.|++ ++..+...+...+.++....++++....|.........+ ......+++.+...+++.+...+..+..+..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344555 555666667777777777777776555555443332211 111233566777778888888888899999999
Q ss_pred ccccccc-cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725 111 NELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189 (591)
Q Consensus 111 n~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a 189 (591)
..++..| ++++|+.+|.+++.+.|.++. +|.++|.+|...|+|++|+..|+++++++|++..+++.+|.+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGP---------AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999 999999999999999988765 799999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
|...|++++|+..|+++++++|++..++..++.+....++...+...++..+
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887666555555444
No 53
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=2.6e-14 Score=163.03 Aligned_cols=149 Identities=13% Similarity=-0.048 Sum_probs=133.8
Q ss_pred ChHHHHHHHHhhhhcc--------cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccc
Q 007725 81 SPEEIATMRARIDAQM--------NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 152 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l--------~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nl 152 (591)
...+++.+...+++.+ ...++.+..+..+|..++..|+|++|+..|.++++++|.++. +|+++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~l 473 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------LVWYR 473 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------HHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------HHHHH
Confidence 3445566777777777 778889999999999999999999999999999999999866 89999
Q ss_pred ceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 153 a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
|.+|+.+|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++ +.+|+++++++|++..++..++.+...++++++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999887766
Q ss_pred CCCCccc
Q 007725 233 HHGPRGL 239 (591)
Q Consensus 233 a~~~~~~ 239 (591)
+...++.
T Consensus 553 A~~~~~~ 559 (681)
T 2pzi_A 553 AVRTLDE 559 (681)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5444443
No 54
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.31 E-value=1.2e-13 Score=120.73 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=103.2
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---hH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VK 181 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~ 181 (591)
.++.+|..++..|+|++|+..|.+++...|.++. ...+++++|.||++.|+|++|+..|+++++++|++ +.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH
Confidence 4678899999999999999999999999888762 11378899999999999999999999999999999 89
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+++++|.+|..+|++++|+..|++++...|++..+...+..+...
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999988776665555443
No 55
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=5.2e-14 Score=136.37 Aligned_cols=158 Identities=12% Similarity=0.087 Sum_probs=129.8
Q ss_pred HHHHHHHhhhhcccccchH-------HHHHHHhcccccccccchhHHHHHHHhhhccccccc-----------------c
Q 007725 84 EIATMRARIDAQMNYEFNA-------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-----------------S 139 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~-------a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-----------------~ 139 (591)
+++.+...+...+...+.. +..+..+|..+...|+|++|+..|.+++.+.|.... .
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH
Confidence 4555666666666655544 788999999999999999999999999995432000 0
Q ss_pred ccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725 140 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (591)
Q Consensus 140 e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~ 219 (591)
...+....+|.++|.+|...|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 00111234789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhccCCCCCccchH
Q 007725 220 LRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 220 L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++.+...+++.+.+...++..+
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999988877766666655
No 56
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.30 E-value=1.3e-14 Score=134.58 Aligned_cols=110 Identities=12% Similarity=-0.018 Sum_probs=102.9
Q ss_pred HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (591)
Q Consensus 124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l 203 (591)
..|.+++.++|.++. +++++|.+|++.|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|
T Consensus 23 ~~l~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 23 ATLKDINAIPDDMMD---------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CCTGGGCCSCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHhCCCHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 457888999998876 79999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725 204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 242 (591)
Q Consensus 204 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~ 242 (591)
+++++++|+++.++..++.+...+++..++...++..+.
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877777663
No 57
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.30 E-value=1e-13 Score=153.64 Aligned_cols=141 Identities=12% Similarity=0.020 Sum_probs=95.0
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
++.+...+++.+...+..+..+..+|..++..|+|++|+.+|+++++++|.++. +|+++|.+|..+|+|++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---------AVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHH
Confidence 445555666666666777777777777777777888888888888777776654 67777777777788888
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh---hhccCCC
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL---MKEDGHH 234 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l---~~~~~a~ 234 (591)
|++.|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+ ++..++.
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 888888877777777777777888877778888888888887777777777777777777766 5544433
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.29 E-value=1.6e-13 Score=133.70 Aligned_cols=187 Identities=11% Similarity=0.013 Sum_probs=148.6
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e 121 (591)
+...+...+.++....++++....|.......... .....++++.+...+.+.+...+.....+..+|..++..|+|++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 44455566677776666666555555544433321 11123456677777888877788888999999999999999999
Q ss_pred HHHHHHHhhh--ccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHH
Q 007725 122 ALQKYLLAKK--NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199 (591)
Q Consensus 122 Ai~~Y~kAL~--l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeA 199 (591)
|+.+|.+++. ..|.++. +++++|.+|...|++++|+..|+++++++|.+..+++.+|.+|..+|++++|
T Consensus 124 A~~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSR---------VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999 5555433 7889999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 200 VSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 200 l~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
+..|+++++++|++..++..+..+....++.+.+...++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999888888887776655544433
No 59
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=6.5e-14 Score=138.71 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=122.9
Q ss_pred HHHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-
Q 007725 83 EEIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK- 158 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~---a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~- 158 (591)
++++.|...+...+...+.. +.+++.+|.+++..|+|++|+..|.+++.+.|.++. ...+++++|.||+.
T Consensus 29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------VPQAEYERAMCYYKL 102 (261)
T ss_dssp TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------hHHHHHHHHHHHHHh
Confidence 45667777788887776666 899999999999999999999999999999887654 23478999999999
Q ss_pred -------cccchhhhhhcceeeeccccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC-
Q 007725 159 -------TKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD- 213 (591)
Q Consensus 159 -------lg~y~eAi~~~~~AL~ldP~~~~a~-----------------~~rg~al~~lg~~eeAl~~lekAl~l~P~~- 213 (591)
.|++++|+..|+++++++|++..++ +.+|.+|...|+|++|+..|+++++..|++
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred cccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 9999999999999999999987666 899999999999999999999999999985
Q ss_pred --ChHHHHHhHHHHHhh
Q 007725 214 --GTIADVLRDAKEILM 228 (591)
Q Consensus 214 --~~a~~~L~~a~~~l~ 228 (591)
..++..++.+...++
T Consensus 183 ~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 183 WADDALVGAMRAYIAYA 199 (261)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 457888888888773
No 60
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.4e-13 Score=125.96 Aligned_cols=149 Identities=12% Similarity=0.144 Sum_probs=130.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+...+..+..+..+|..++..|++++|+.+|.+++...|.++. ++.+++.+|...|+++
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---------VATVLGLTYVQVQKYD 93 (186)
T ss_dssp CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHH
Confidence 4556777777777777778889999999999999999999999999999887754 7889999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+|+..++++++++|.+..+++.+|.++...|++++|+..|++++.++|++..++..++.+....++...+...++..+
T Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888877666555544444
No 61
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=5.6e-13 Score=129.00 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=120.5
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++. +|+++|.||...|+|+
T Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFP 190 (258)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHhCCHH
Confidence 4556677777777788899999999999999999999999999999999988765 7999999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhHH
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDA 223 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~------P~~~~a~~~L~~a 223 (591)
+|+..|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++ |++..++..|..+
T Consensus 191 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999 8888888777664
No 62
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.28 E-value=9.9e-13 Score=133.19 Aligned_cols=180 Identities=20% Similarity=0.281 Sum_probs=137.4
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHH------------HHHhcccc
Q 007725 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKM------------LKKQGNEL 113 (591)
Q Consensus 47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~------------lk~~Gn~~ 113 (591)
+...+.++....++......|........... ....++++.+...+...+...+..... ....|..+
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444333311 112234555666666666655554443 33558889
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh
Q 007725 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193 (591)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l 193 (591)
++.|+|++|+..|.+++...|.++. ....++.++|.||.+.|+|++|+..|+++++++|+++.+|+++|.+|..+
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSVAE-----YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999888653 12235778999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 194 g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
|++++|+.+|+++++++|++..++..|..++..+++.+
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988887543
No 63
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.27 E-value=2.3e-13 Score=136.81 Aligned_cols=141 Identities=11% Similarity=-0.041 Sum_probs=97.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+...+.....+..+|..++..|++++|+..|.+++...|.++. ++.++|.+|...|+|+
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF---------VMHEVGVVAFQNGEWK 210 (330)
T ss_dssp CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcccHH
Confidence 3445556666666666666666666777777777777777777777777666544 5667777777777777
Q ss_pred hhhhhcceeeecc---------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 164 ECIKVGSEVLAYD---------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 164 eAi~~~~~AL~ld---------P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
+|+..+++++++. |.++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++...+
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 7777777777765 566677777777777777777777777777777777777777777776666654443
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=2.3e-13 Score=131.10 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=139.5
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e 121 (591)
+.-.....+.++....+++.....|.......... .....++++.+...+.+.+...+.....+..+|..++..|+|++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 33344455566666655555544554444333221 11123356677777888888888888999999999999999999
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
|+..|.+++.+.|.++. ++.++|.+|.+.|+|++|+..|+++++++|+++.+++.+|.+|..+|++++|+.
T Consensus 144 A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTE---------ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHhCCccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999888765 789999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHHHHHhHHHHHh
Q 007725 202 DLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 202 ~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+|+++++++|++..++..+..+....
T Consensus 215 ~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 215 MLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHccCcchHHHHHHHHHHHhhc
Confidence 99999999999999988888765543
No 65
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.27 E-value=1.3e-13 Score=120.25 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=89.4
Q ss_pred ccccchhHHHHHHHhhhc---cccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725 115 SEGRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (591)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l---~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~ 191 (591)
..|+|++|+.+|.++|++ +|.++. +|+++|.||+.+|+|++|+..|+++++++|+++.+++++|.+|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAE---------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 468999999999999999 466544 89999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 192 ~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
.+|++++|+..|++++.++|+++.+......+....
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999988766555544433
No 66
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.27 E-value=2.6e-13 Score=139.30 Aligned_cols=203 Identities=10% Similarity=-0.046 Sum_probs=150.6
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g 117 (591)
++..+...+...+.++....++++....|........... ....++++.+...+...+...+..+..+..+|..+...|
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 3344445555556666666666665556665554443311 112335667778888888888888899999999999999
Q ss_pred cchhHHHHHHHhhhcccccccccc----------------------------------------cee--eeeecccccee
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEG----------------------------------------RTL--LLACSLNSMSC 155 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~----------------------------------------~~l--~~~~~~Nla~~ 155 (591)
++++|+..|.+++.+.|.+..... .+. ...++.++|.+
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 999999999999988877653211 000 23467788888
Q ss_pred eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG 235 (591)
Q Consensus 156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~ 235 (591)
|.+.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++...+..
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 88899999999999999998998888999999999999999999999999999999888888888888888887776666
Q ss_pred CccchH
Q 007725 236 PRGLLI 241 (591)
Q Consensus 236 ~~~~~i 241 (591)
.++..+
T Consensus 307 ~~~~al 312 (368)
T 1fch_A 307 HFLEAL 312 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.27 E-value=2.7e-13 Score=137.54 Aligned_cols=103 Identities=26% Similarity=0.375 Sum_probs=98.6
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+..++.+|+.++..|+|++|+..|.+++.+.|.++. +|+|+|.||+++|+|++|+.+|+++++++|+++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 4678999999999999999999999999999998765 8999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999976
No 68
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.27 E-value=5.2e-13 Score=114.17 Aligned_cols=116 Identities=28% Similarity=0.393 Sum_probs=108.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
+..+..+|..++..|+|++|+..|.+++...|.++. ++.+++.+|...|+|++|+..|+++++++|.+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence 567889999999999999999999999999887654 78899999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
++.+|.+|...|++++|+..|++++.++|++..++..++.+....
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888876543
No 69
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.26 E-value=1.9e-13 Score=138.57 Aligned_cols=194 Identities=10% Similarity=0.066 Sum_probs=156.9
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g 117 (591)
++..+...+...+.++....++.+....|.......... .....+++..+...+...+...+.....+..+|..++..|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 445566666666777777766666656666555444432 1123345677888888888888888999999999999999
Q ss_pred cchhHHHHHHHhhhccc---cccccccceeeeeecccc------------ceeeeccccchhhhhhcceeeeccccchHH
Q 007725 118 RFSNALQKYLLAKKNLQ---GIHSSEGRTLLLACSLNS------------MSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p---~~~~~e~~~l~~~~~~Nl------------a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
+|++|+..|.+++.+.| .++. ++.++ +.+|...|+|++|+..|+++++++|.++.+
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKE---------AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHH---------HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999988 6654 34444 799999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++.+|.++..+|++++|+..|++++.++|++..++..++.+....++...+...++..+
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877665544444333
No 70
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.24 E-value=3e-13 Score=113.85 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=98.4
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK- 178 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~- 178 (591)
+..+..+..+|..++..|+|++|+.+|.+++++.|.++. +|+++|.+|+..|+|++|+..|+++++++|.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---------YWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 344567888999999999999999999999999888755 7899999999999999999999999999999
Q ss_pred -chHHHHHhccchhhh-hhHHHHhhhcccccccCCCCC
Q 007725 179 -NVKALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 179 -~~~a~~~rg~al~~l-g~~eeAl~~lekAl~l~P~~~ 214 (591)
+..+++++|.++..+ |++++|+.++++++..+|.+.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 999999999999999999764
No 71
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.23 E-value=6.9e-13 Score=118.32 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=103.3
Q ss_pred hcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007725 62 LTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE 140 (591)
Q Consensus 62 l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e 140 (591)
++...|+..+....+ ......++++.|...+.+.+...+..+..+.++|.++++.|+|++|+..|.++|+++|.++.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK-- 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH--
Confidence 344567766665554 22223456778999999999999999999999999999999999999999999999999865
Q ss_pred cceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (591)
Q Consensus 141 ~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al 190 (591)
+|+++|.||..+|+|++|+.+|+++|+++|++..++..++.|+
T Consensus 83 -------a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 83 -------GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999988775
No 72
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.23 E-value=5.6e-13 Score=126.26 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=135.3
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-ccch
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFS 120 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~-g~y~ 120 (591)
+...+...+.++....++......|+......... .....++++.+...+...+...+.....+..+|..++.. |+|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence 33334444555555554444444444333322221 111223456677777777777888888999999999999 9999
Q ss_pred hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh
Q 007725 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200 (591)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl 200 (591)
+|+..|.+++. .|.++. ...++.++|.||...|++++|+..|+++++++|.+..+++.+|.++...|++++|+
T Consensus 95 ~A~~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 95 ESMAYFDKALA-DPTYPT------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp HHHHHHHHHHT-STTCSC------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHc-CcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 99999999999 333332 13378899999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCC-CCChHHHHHhHHHHHhhhc
Q 007725 201 SDLSNAHEVSP-DDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 201 ~~lekAl~l~P-~~~~a~~~L~~a~~~l~~~ 230 (591)
..|++++.++| ++..++..+..+....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 99999999999 8888887777766665543
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.23 E-value=5.1e-13 Score=131.36 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=121.0
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.+...+.+.+...+..+..+..+|..++..|+|++|+..|.+++. .+.++. ....+|.++|.||...|+|
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-----~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-----AKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----CCHHHHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----HHHHHHHHHHHHHHHcccH
Confidence 3566677777777777888888999999999999999999999999999 554443 1233589999999999999
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh-HHHH
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR-DAKE 225 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~-~a~~ 225 (591)
++|+..|+++++++|.++.+|+.+|.+|..+|++++|+.+|+++++++|.+..++..++ .+..
T Consensus 91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 4433
No 74
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=3.6e-13 Score=136.83 Aligned_cols=150 Identities=11% Similarity=0.010 Sum_probs=130.5
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
.++++.|...+++.+...++.+.++..+|..+...|++++|+..|.+++...|.... .+.+.+..+.+.++
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~---------~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY---------QGLVAQIELLXQAA 200 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH---------HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH---------HHHHHHHHHHhhcc
Confidence 345667888888889999999999999999999999999999999999999885432 46677777888999
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
+.+|+..|++++.++|+++.+++++|.+|...|++++|+..|+++++++|++ ..++..|..+...+++...+...++.
T Consensus 201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 88999999999988876555444443
Q ss_pred h
Q 007725 240 L 240 (591)
Q Consensus 240 ~ 240 (591)
.
T Consensus 281 a 281 (287)
T 3qou_A 281 Q 281 (287)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.23 E-value=4.5e-13 Score=125.27 Aligned_cols=147 Identities=16% Similarity=0.067 Sum_probs=121.5
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee-eeccccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY 162 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~-y~~lg~y 162 (591)
+++.+...+++.+...++.+..+..+|..+...|++++|+..|.+++...| ++. ++..++.+ +...++.
T Consensus 21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---------~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---------YKSLIAKLELHQQAAE 90 (176)
T ss_dssp CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---------HHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---------HHHHHHHHHHHhhccc
Confidence 456677888888888999999999999999999999999999999999988 653 22223322 2233455
Q ss_pred hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCCCCccch
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~~~~a~~~~~~~ 240 (591)
.+|+..|+++++++|+++.+++++|.+|...|++++|+..|+++++++|++ ..++..++.+...+++..++...++..
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999986 559999999999888766555444443
No 76
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.22 E-value=4.6e-13 Score=127.41 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=111.1
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+..++.+|..++..|+|++|+.+|.+++.. ++ .+|+++|.||.+.|+|++|+..|+++++++|+++.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP---HS---------RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC---CH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC---Ch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 3556889999999999999999999999732 22 37999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCC----------------hHHHHHhHHHHHhhhccCCCCCccc
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~----------------~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
+|+++|.+|..+|++++|+.+|++++++.|++. .++..++.+...+++...+...++.
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999887 8899999998888776655444443
No 77
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.22 E-value=5.7e-13 Score=126.24 Aligned_cols=150 Identities=11% Similarity=-0.055 Sum_probs=132.5
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-cc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQ 161 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-g~ 161 (591)
++++.+...++..+...+.....+..+|..+...|+|++|+.+|.+++.+.|.++. ++.+++.+|... |+
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---------INNNYGWFLCGRLNR 92 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCC
T ss_pred hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCc
Confidence 34566777777777778888899999999999999999999999999999888755 789999999999 99
Q ss_pred chhhhhhcceeee--ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 162 YDECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 162 y~eAi~~~~~AL~--ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
+++|+..|+++++ .+|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.+....++...+...++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999 77888999999999999999999999999999999999999999999998888776665544444
Q ss_pred hH
Q 007725 240 LI 241 (591)
Q Consensus 240 ~i 241 (591)
.+
T Consensus 173 ~~ 174 (225)
T 2vq2_A 173 YQ 174 (225)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 78
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=5.4e-13 Score=113.18 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=89.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 179 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-- 179 (591)
.+..++.+|..++..|+|++|+.+|.+++.+.|.++. +|+|+|.||+++|+|++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---------GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH
Confidence 4668899999999999999999999999999988765 78999999999999999999999999999998
Q ss_pred ----hHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 180 ----~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
..+++++|.++..+|++++|+..+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 9999999999999999999998888754
No 79
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.21 E-value=2.1e-12 Score=126.67 Aligned_cols=132 Identities=20% Similarity=0.073 Sum_probs=115.8
Q ss_pred HHHHHHHHhhhhcccc----cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725 83 EEIATMRARIDAQMNY----EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~----~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~ 158 (591)
.+++.+...+...+.. .+..+..+..+|..++..|+|++|+.+|.+++.+.|.++. +|.++|.+|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~ 89 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQ 89 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHH
Confidence 4555666666666554 4567899999999999999999999999999999888765 79999999999
Q ss_pred cccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
.|+|++|+..|+++++++|.++.+++.+|.+|..+|++++|+..|+++++++|++......+..+
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987655544433
No 80
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.20 E-value=1.1e-12 Score=131.72 Aligned_cols=193 Identities=13% Similarity=0.068 Sum_probs=150.3
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g 117 (591)
++..+...+...+.++....++++....|+......... .....++++.+...+.+.+...+.....+..+|..+...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 455566666667777777766666555665555444331 1112345667888888888888888999999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccc--------------ce-eeeccccchhhhhhcceeeeccccchHH
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS--------------MS-CYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nl--------------a~-~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
+|++|+..|.+++...|.+.. ++..+ +. +|...|++++|+..++++++++|.++.+
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQ---------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTT---------C--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCccHH---------HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 999999999999999888765 34444 55 7889999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~ 240 (591)
++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877666554444433
No 81
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.20 E-value=2.6e-12 Score=135.83 Aligned_cols=180 Identities=21% Similarity=0.277 Sum_probs=137.3
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHh------------cccc
Q 007725 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQ------------GNEL 113 (591)
Q Consensus 47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~------------Gn~~ 113 (591)
.+..+.++....++++....|.....+..... ....++++.+...+...+...+.....+..+ |..+
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566555555554444443333332211 1122345566666776666666655555444 9999
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh
Q 007725 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193 (591)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l 193 (591)
+..|+|++|+.+|.+++.+.|.++. ....+|.+++.+|.+.|++++|+..|+++++++|+++.+|+.+|.+|...
T Consensus 268 ~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKTEPSIAE-----YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999999999999999887642 11236889999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725 194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (591)
Q Consensus 194 g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~ 231 (591)
|++++|+.+|+++++++|++..++..++.++..+++..
T Consensus 343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999888776543
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=6.2e-13 Score=121.58 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=132.8
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (591)
Q Consensus 43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e 121 (591)
+...+...+.++....++.+....|+.......... ....++++.+...++..+...+.....+..+|..++..|++++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Confidence 333344455555555555555555554443333211 1123456667777777777788888999999999999999999
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
|+.+|.+++...|.++. ++.++|.+|...|++++|+..++++++++|.++.+++.+|.++...|++++|+.
T Consensus 95 A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 95 AVPLLIKVAEANPINFN---------VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCcHhHH---------HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999888754 789999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHH
Q 007725 202 DLSNAHEVSPDDGTIA 217 (591)
Q Consensus 202 ~lekAl~l~P~~~~a~ 217 (591)
+|+++++++|++....
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999876543
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=3.3e-12 Score=121.41 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=104.7
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+.. .+..+.++|.+++..|+|++|+..|.+++.++|.++. +|+++|.||..+|+|+
T Consensus 21 ~~~~A~~~~~~a~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 21 DWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------AYFQRGMLYYQTEKYD 88 (213)
T ss_dssp CHHHHHHHHHTSSSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHcccHH
Confidence 344555555555422 4678999999999999999999999999999888765 7999999999999999
Q ss_pred hhhhhcceeeeccccch----------------HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 164 ECIKVGSEVLAYDAKNV----------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~----------------~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
+|+..|++++++.|.+. .+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999776655 99999999999999999999999999999998643
No 84
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.18 E-value=6.8e-13 Score=129.19 Aligned_cols=143 Identities=10% Similarity=-0.004 Sum_probs=128.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+.+.+...+..+..+..+|..++..|+|++|+..|.+++.+.|.++. ++.+++.+|...|+|+
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---------VLNNYGGFLYEQKRYE 122 (252)
T ss_dssp CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHHhHHH
Confidence 4556677777777777888899999999999999999999999999999887754 7899999999999999
Q ss_pred hhhhhcceeee--ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725 164 ECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG 235 (591)
Q Consensus 164 eAi~~~~~AL~--ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~ 235 (591)
+|+..|+++++ .+|.+..+++.+|.+|...|++++|+..|+++++++|.+..++..++.+....++...+..
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999 8899999999999999999999999999999999999999999999999888776555433
No 85
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.18 E-value=4.8e-12 Score=129.14 Aligned_cols=131 Identities=11% Similarity=-0.012 Sum_probs=108.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee----eecc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC----YLKT 159 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~----y~~l 159 (591)
+++.|...+++ +.....+..+|..+.+.|++++|+..|++++...|++. +.+++.+ +...
T Consensus 116 ~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 116 NPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------LTQLATAWVSLAAGG 179 (291)
T ss_dssp CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------HHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------HHHHHHHHHHHHhCc
Confidence 34445555544 56678899999999999999999999999999977653 2333333 3345
Q ss_pred ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
|+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+.+|+++++++|++++++.+++.+...+++.
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999888777643
No 86
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.18 E-value=2.9e-12 Score=130.75 Aligned_cols=129 Identities=11% Similarity=0.085 Sum_probs=107.4
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhc--ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQG--NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~G--n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
++++.|...+++.+...++........+ +.+...|+|++|+.+|++++...|.++. +|+++|.||.++|
T Consensus 144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g 214 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL---------LLNGQAACHMAQG 214 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcC
Confidence 3455677777777766666543333222 4445679999999999999999888765 8999999999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHH-HhhhcccccccCCCCChHHHHH
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE-AVSDLSNAHEVSPDDGTIADVL 220 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ee-Al~~lekAl~l~P~~~~a~~~L 220 (591)
+|++|+..|+++|+++|+++.+++++|.++..+|++++ +..+++++++++|+++.+....
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999987 5688999999999999876643
No 87
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.16 E-value=3.4e-13 Score=123.67 Aligned_cols=111 Identities=7% Similarity=-0.034 Sum_probs=102.0
Q ss_pred HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (591)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~ 201 (591)
+...|.+++.+.|.+.. +++++|.+|++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+.
T Consensus 6 ~~~~~~~al~~~p~~~~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLE---------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp CCCSHHHHTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHcCCHhhHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34568999999888765 789999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 202 DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+|++++.++|+++.++..++.+...+++..++...++..+
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998887776666655
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=3.4e-12 Score=141.45 Aligned_cols=156 Identities=7% Similarity=-0.040 Sum_probs=125.2
Q ss_pred hhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725 57 CAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (591)
Q Consensus 57 ~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (591)
..+++.....|+......... ......+++.+...+++.+...++.+..+..+|..++..|+|++|+.+|++++++.|.
T Consensus 10 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 89 (568)
T 2vsy_A 10 LQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89 (568)
T ss_dssp -----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 333444444444444433321 1112346778888899999999999999999999999999999999999999999998
Q ss_pred ccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh---hhHHHHhhhcccccccCCC
Q 007725 136 IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 136 ~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l---g~~eeAl~~lekAl~l~P~ 212 (591)
++. +|+++|.||.+.|+|++|++.|+++++++|++..+++++|.+|..+ |++++|+..|+++++++|+
T Consensus 90 ~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 90 HPG---------IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp CHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred CHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 865 7999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred CChHHHHHh
Q 007725 213 DGTIADVLR 221 (591)
Q Consensus 213 ~~~a~~~L~ 221 (591)
+...+..+.
T Consensus 161 ~~~~~~~l~ 169 (568)
T 2vsy_A 161 AVEPFAFLS 169 (568)
T ss_dssp CSCHHHHTT
T ss_pred ccChHHHhC
Confidence 766554443
No 89
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.13 E-value=1e-12 Score=139.00 Aligned_cols=203 Identities=9% Similarity=0.068 Sum_probs=155.9
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g 117 (591)
+...+...++..+.++....++.+....|........... ....++++.+...+.+.+...+..+..+..+|..+...|
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 3444666667777888877777776666666555444321 122345677888888888888999999999999999999
Q ss_pred cchhHHHHHHHhhhcccccc---ccccc---eeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725 118 RFSNALQKYLLAKKNLQGIH---SSEGR---TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~---~~e~~---~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~ 191 (591)
+|++|+..|.+++.+.|.++ ..... -.....++++|.+|...|+|++|+..|+++++++|.++.+++.+|.+|.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999988765 30000 0000013455788999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 192 ~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
..|++++|+..|+++++++|++..++..++.+....++...+...++..+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888877665544444433
No 90
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.12 E-value=8.7e-13 Score=122.54 Aligned_cols=127 Identities=9% Similarity=0.003 Sum_probs=108.8
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHH
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~ 185 (591)
+...++.++..|+|++|+..|.+++...|.++. +|+++|.||...|+|++|+..|+++++++|+++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 83 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHHHCCSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 455677889999999999999999999998765 79999999999999999999999999999999999999
Q ss_pred hccc-hhhhhhH--HHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 186 RGQA-YKDIGRL--EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 186 rg~a-l~~lg~~--eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+|.+ +...|++ ++|+.+|++++.++|++..++..++.+....++...+...+...+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999 8899999 999999999999999999999999999988877665544444433
No 91
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.12 E-value=7.9e-12 Score=122.53 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=91.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+++.+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++. +|+++|.||.+.|+|+
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AHLNRGIALYYGGRDK 128 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH---------HHHHHHHHHHHhccHH
Confidence 4445566666666666666666777777777777777777777777776666543 5666777777777777
Q ss_pred hhhhhcceeeeccccc----------------------------------------------------------------
Q 007725 164 ECIKVGSEVLAYDAKN---------------------------------------------------------------- 179 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~---------------------------------------------------------------- 179 (591)
+|+..|+++++++|++
T Consensus 129 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 7777766666666554
Q ss_pred ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725 180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG 235 (591)
Q Consensus 180 ------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~ 235 (591)
+.+|+.+|.+|..+|++++|+..|++++.++|++...+ ..+...+++.+++..
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQD 267 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC--
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHH
Confidence 46677788888888888888888888888888765433 334444444444433
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=1.7e-12 Score=111.91 Aligned_cols=119 Identities=25% Similarity=0.306 Sum_probs=87.3
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~ 184 (591)
.+..+|..++..|++++|+..|.+++...|.++. ++.+++.+|...|++++|+..+++++.++|.+..+++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH
Confidence 4566677777777777777777777777665543 5667777777777777777777777777777777777
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
.+|.++...|++++|+..|++++.+.|.+..++..++.+....++...
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence 777777777777778777777777777777777777766665554433
No 93
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.10 E-value=4.1e-12 Score=136.01 Aligned_cols=186 Identities=10% Similarity=0.013 Sum_probs=131.1
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHH
Q 007725 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK 125 (591)
Q Consensus 47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~ 125 (591)
....+.++....++......|........... ....++++.+...+...+...+.....+..+|..++..|+|++|+..
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33445555555555554444444333222211 11122344566666666666777777888888888888888888888
Q ss_pred HHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH------HHHHhccchhh---hhhH
Q 007725 126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK------ALYRRGQAYKD---IGRL 196 (591)
Q Consensus 126 Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~------a~~~rg~al~~---lg~~ 196 (591)
|.+++...|.++. +|.++|.+|.+.|+|++|+..|+++++++|++.. +++.+|.++.. .|++
T Consensus 361 ~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 361 FSEAKRKFPEAPE---------VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHSTTCSH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHcccCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 8888888777654 6788888888888888888888888888888754 88888888888 8888
Q ss_pred HHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 197 EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 197 eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++|+..|++++.++|++..++..++.+....++...+...++..+
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888888888888888888888888887776665554444443
No 94
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.10 E-value=6.5e-12 Score=135.68 Aligned_cols=148 Identities=7% Similarity=-0.004 Sum_probs=134.4
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+...+. ...+..+|..++..|+|++|+.+|.+++...|.++. +|.++|.+|...|+|+
T Consensus 258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMYFILQDYK 327 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHHhcCCHH
Confidence 345677777777777888 889999999999999999999999999999988765 7999999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+|+..|+++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+....++...+...++..+
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998887777666666555
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=6.2e-12 Score=108.27 Aligned_cols=119 Identities=24% Similarity=0.340 Sum_probs=105.9
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
++.+...+...+...+.....+..+|..++..|++++|+..|.+++...|.++. ++.+++.+|...|++++
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDE 87 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---------HHHHHHHHHHHhcCHHH
Confidence 444555555555556667788899999999999999999999999999887654 68899999999999999
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
|+..++++++++|.+..+++.+|.++...|++++|+..|++++.++|+
T Consensus 88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999886
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=2.5e-12 Score=125.14 Aligned_cols=149 Identities=9% Similarity=-0.032 Sum_probs=118.9
Q ss_pred HHHHHHHhhhhcccccch---HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee---
Q 007725 84 EIATMRARIDAQMNYEFN---AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL--- 157 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~---~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~--- 157 (591)
+++.|...+++.+...+. ...+++.+|.++++.|+|++|+..|.++++..|.++. ...+++++|.||.
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------IDYVMYMRGLTNMALD 92 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------HHHHHHHHHHHHHhhh
Confidence 344555555555544333 4578999999999999999999999999999998764 1124566666655
Q ss_pred ---------------ccccchhhhhhcceeeeccccchHHH-----------------HHhccchhhhhhHHHHhhhccc
Q 007725 158 ---------------KTKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSN 205 (591)
Q Consensus 158 ---------------~lg~y~eAi~~~~~AL~ldP~~~~a~-----------------~~rg~al~~lg~~eeAl~~lek 205 (591)
..|++++|+..|+++|+.+|++..++ +.+|.+|...|++++|+..|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 47899999999999999999987654 6789999999999999999999
Q ss_pred ccccCCCCC---hHHHHHhHHHHHhhhccCCCCCcc
Q 007725 206 AHEVSPDDG---TIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 206 Al~l~P~~~---~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
+++..|+++ +++..++.+...+++...+...++
T Consensus 173 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 173 MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999976 678889999998887666544433
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=5.1e-12 Score=122.98 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=97.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH-
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK- 181 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~- 181 (591)
+..++.+|..++..|+|++|+..|.+++...|..+. ...+++++|.||++.|+|++|+..|+++++++|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 457889999999999999999999999999887652 1237899999999999999999999999999999875
Q ss_pred --HHHHhccchhh------------------hhhHHHHhhhcccccccCCCCChHHH
Q 007725 182 --ALYRRGQAYKD------------------IGRLEEAVSDLSNAHEVSPDDGTIAD 218 (591)
Q Consensus 182 --a~~~rg~al~~------------------lg~~eeAl~~lekAl~l~P~~~~a~~ 218 (591)
++|.+|.++.. .|++++|+..|+++++..|++..++.
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 89999999876 68999999999999999999986653
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=2.2e-12 Score=130.96 Aligned_cols=136 Identities=11% Similarity=-0.083 Sum_probs=112.3
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-ccchhhhhhcceeeeccccc
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-g~y~eAi~~~~~AL~ldP~~ 179 (591)
..+..+.++|+++...|+|++|+.+|.+++.+.+.... ......+|.|+|.+|... |+|++|+.+|++||++.|.+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999775422 001134788999999995 99999999999999999865
Q ss_pred ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh-------HHHHHhHHHHHhhhccCCCCCccc
Q 007725 180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 180 ------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~-------a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
..+|+++|.+|..+|+|++|+.+|++++.+.|++.. ++..++.+...+++...+...++.
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 678999999999999999999999999999998754 456777887777766555444443
No 99
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.07 E-value=7.3e-12 Score=137.56 Aligned_cols=185 Identities=9% Similarity=-0.076 Sum_probs=140.2
Q ss_pred ccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHH
Q 007725 48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY 126 (591)
Q Consensus 48 ~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~-~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y 126 (591)
+..+.++....++++....|.....+...+.. ...++++.+...+++.+...+.....+..+|..+.+.|++++|++.|
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445555555554444444444333332111 12234556677777777777777888888999999999999999999
Q ss_pred HHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec------cccc-hHHHHHhccchhhhhhHHHH
Q 007725 127 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DAKN-VKALYRRGQAYKDIGRLEEA 199 (591)
Q Consensus 127 ~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l------dP~~-~~a~~~rg~al~~lg~~eeA 199 (591)
.+++++.|.++. +|.+++.+|.+.|++++|++.|++++++ +|++ ..+|+.+|.+|...|++++|
T Consensus 465 ~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 465 QSSYALFQYDPL---------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCCCChH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 999988887754 6889999999999999999999999988 5664 78999999999999999999
Q ss_pred hhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 200 VSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 200 l~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+..|+++++++|++..++..++.+....++.+++...++..+
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999888887766655555444
No 100
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.06 E-value=3.1e-12 Score=115.43 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=97.7
Q ss_pred HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (591)
Q Consensus 124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l 203 (591)
..|.+++.+.|.+.. .++++|.+|++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus 5 ~~l~~al~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLE---------QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp ----CCTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcCCHHHHH---------HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 568889999888765 78899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 204 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++++.++|+++.++..++.+...+++...+...++..+
T Consensus 76 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 76 SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999998887776666655
No 101
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.05 E-value=5.5e-12 Score=138.56 Aligned_cols=148 Identities=8% Similarity=-0.070 Sum_probs=129.4
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
+..+...+...+...+..+..+..+|..+++.|++++|++.|.+++++.|.+.. +|++++.+|.+.|++++
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP---------AWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHH
Confidence 445555566656667778889999999999999999999999999999888754 78999999999999999
Q ss_pred hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
|++.|+++++++|++..+|+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.+++...++..+
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888877766655555444
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=1.9e-11 Score=124.00 Aligned_cols=161 Identities=7% Similarity=-0.102 Sum_probs=139.7
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g 117 (591)
++..|...+...+.++....++++....|+......... .....++++.|...+++.+...++....+...+..+...+
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 666677788888999999988888888888776655542 2223456677888888888888888888888888899999
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--hHHHHHhccchhhhhh
Q 007725 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--VKALYRRGQAYKDIGR 195 (591)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--~~a~~~rg~al~~lg~ 195 (591)
++.+|+..|++++...|+++. +++++|.+|...|++++|+..|.++++++|++ ..++.+++.+|..+|+
T Consensus 200 ~~~~a~~~l~~al~~~P~~~~---------~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 200 ADTPEIQQLQQQVAENPEDAA---------LATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp TSCHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred ccCccHHHHHHHHhcCCccHH---------HHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 999999999999999999876 89999999999999999999999999999998 9999999999999999
Q ss_pred HHHHhhhcccccc
Q 007725 196 LEEAVSDLSNAHE 208 (591)
Q Consensus 196 ~eeAl~~lekAl~ 208 (591)
+++|+..|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998864
No 103
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.04 E-value=1.4e-11 Score=106.57 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=88.1
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHH
Q 007725 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199 (591)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeA 199 (591)
.+|+..|.+++...|.++. +|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|
T Consensus 2 ~~a~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNML---------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 5789999999999998865 7999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCC--hHHHHHhHHHHHhh
Q 007725 200 VSDLSNAHEVSPDDG--TIADVLRDAKEILM 228 (591)
Q Consensus 200 l~~lekAl~l~P~~~--~a~~~L~~a~~~l~ 228 (591)
+.+|++++.++|.+. .+...+..+...++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 999999999998643 44555555555443
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.04 E-value=5.7e-12 Score=136.12 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=99.0
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+.+.+...+.....+..+|..++..|+|++|+..|.+++...|.++. +|.++|.+|...|+|+
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEILTDRGDFD 395 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhCCHH
Confidence 3445555566666666666666667777777777777777777777776666544 5667777777777777
Q ss_pred hhhhhcceeeeccccchHH------HHHhccchhhh----------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 164 ECIKVGSEVLAYDAKNVKA------LYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a------~~~rg~al~~l----------g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+|+..|+++++++|++... ++.+|.+|... |++++|+.+|+++++++|++..++..++.+....
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 7777777777776655433 44455666666 7777777777777777777777777777777777
Q ss_pred hhccCCCCCccchH
Q 007725 228 MKEDGHHGPRGLLI 241 (591)
Q Consensus 228 ~~~~~a~~~~~~~i 241 (591)
++.+++...++..+
T Consensus 476 g~~~~A~~~~~~al 489 (537)
T 3fp2_A 476 EKIDEAIELFEDSA 489 (537)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 66655544444443
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=2.7e-11 Score=122.84 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhcccccch------HHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725 84 EIATMRARIDAQMNYEFN------AAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~------~a~~lk~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y 156 (591)
+++.+...+++++...+. .+..+.++|..+... |+|++|+.+|.+++.+.|.+.. ......+|.++|.+|
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLK 168 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHH
Confidence 445566666666554332 367899999999996 9999999999999999886521 001134789999999
Q ss_pred eccccchhhhhhcceeeeccccchH-------HHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKNVK-------ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~~~-------a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a 216 (591)
.++|+|++|+..|+++++++|++.. +|+++|.+|..+|++++|+.+|++++.++|++...
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999999999999999999987643 68999999999999999999999999999987654
No 106
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=7.2e-12 Score=122.38 Aligned_cols=138 Identities=16% Similarity=0.074 Sum_probs=120.5
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhcc-----ccccccccceeeeeeccccceeeeccccchhhhhhcceee
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-----QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~-----p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL 173 (591)
.+..+..+..+|..++..|+|++|+.+|.+++.+. ++.+. ...++.++|.||...|+|++|+..|.+++
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA------VAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH------HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 36678899999999999999999999999999885 22222 34589999999999999999999999999
Q ss_pred ec--------cccchHHHHHhccchhhhhhHHHHhhhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007725 174 AY--------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPR 237 (591)
Q Consensus 174 ~l--------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~a~~~~ 237 (591)
.+ +|....+++++|.+|..+|++++|+.+|++++.+ +|....++..++.+....++...+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98 5889999999999999999999999999999999 6767788999999999988887776666
Q ss_pred cchHH
Q 007725 238 GLLIE 242 (591)
Q Consensus 238 ~~~i~ 242 (591)
+..+.
T Consensus 193 ~~~l~ 197 (283)
T 3edt_B 193 KEILT 197 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 107
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=5.9e-12 Score=134.73 Aligned_cols=148 Identities=9% Similarity=-0.019 Sum_probs=113.4
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+...+.....+..+|..++..|+|++|+..|.+++.+.|.++. ++.+++.+|...|+++
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF---------PYIQLACLAYRENKFD 355 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH---------HHHHHHHHTTTTTCHH
T ss_pred CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH---------HHHHHHHHHHHcCCHH
Confidence 3445556666666667777778888888888888888888888888888777654 6788888888888888
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH---hhhccCCC
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI---LMKEDGHH 234 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~---l~~~~~a~ 234 (591)
+|+..|+++++++|+++.+++.+|.+|...|++++|+..|++++.++|++.. ++..++.+... .++...+.
T Consensus 356 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 8888888888888888888888888888888888888888888888887755 77777777777 66655544
Q ss_pred CCccch
Q 007725 235 GPRGLL 240 (591)
Q Consensus 235 ~~~~~~ 240 (591)
..++..
T Consensus 436 ~~~~~a 441 (514)
T 2gw1_A 436 NLLEKA 441 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.02 E-value=1.4e-11 Score=128.29 Aligned_cols=117 Identities=10% Similarity=-0.078 Sum_probs=105.1
Q ss_pred hHHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeee
Q 007725 82 PEEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLL 146 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~---------------a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~ 146 (591)
..+++.|...|.+.+...+.. +..+.++|.++++.|+|++|+.+|.++|.++|.++.
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 231 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK-------- 231 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------
Confidence 446777888888888877776 699999999999999999999999999999998765
Q ss_pred eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh-hhccccc
Q 007725 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV-SDLSNAH 207 (591)
Q Consensus 147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl-~~lekAl 207 (591)
+|+++|.||+.+|+|++|+.+|+++|+++|++..++++++.++..+|++++|. ..|++.+
T Consensus 232 -a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 -GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999984 4555443
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=6.5e-12 Score=117.31 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=109.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
...+..+|..++..|+|++|+..|++++..+|+++. +++++|.+|...|++++|+..|+++++++| ++..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~ 75 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY 75 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence 345778899999999999999999999999999876 799999999999999999999999999999 8877
Q ss_pred HHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 183 LYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 183 ~~~rg~al~-~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
+..++.+.. ..++..+|+..|+++++++|++..++..++.+....++.+++...++..+
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 666664432 33445568999999999999999999999999999887776655555444
No 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=1e-11 Score=121.25 Aligned_cols=120 Identities=11% Similarity=-0.008 Sum_probs=101.5
Q ss_pred HHHHHHHhhhhcccc--------cchHHHHHHHhcccccccccchhHHHHHHHhhhcc-----ccccccccceeeeeecc
Q 007725 84 EIATMRARIDAQMNY--------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-----QGIHSSEGRTLLLACSL 150 (591)
Q Consensus 84 e~~~a~~~~~~~l~~--------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~-----p~~~~~e~~~l~~~~~~ 150 (591)
++..+...+...+.. .+..+..+..+|..++..|+|++|+.+|.+++.+. +.++. ...+|.
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~ 131 (283)
T 3edt_B 58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD------VAKQLN 131 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH------HHHHHH
Confidence 344455545544433 46778899999999999999999999999999984 22221 345899
Q ss_pred ccceeeeccccchhhhhhcceeeec--------cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAY--------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~l--------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
++|.+|...|+|++|+..|++++++ +|....+++++|.+|..+|++++|+..|++++++
T Consensus 132 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8899999999999999999999999999999986
No 111
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.97 E-value=1.3e-11 Score=115.37 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=89.5
Q ss_pred eccccceeeeccccchhhhhhcceeeecccc-------chH-----HHHHhccchhhhhhHHHHhhhccccccc------
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-------NVK-----ALYRRGQAYKDIGRLEEAVSDLSNAHEV------ 209 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-------~~~-----a~~~rg~al~~lg~~eeAl~~lekAl~l------ 209 (591)
.+.++|.++++.|+|++|+..|++||+++|+ +.. +|+++|.++..+|+|++|+.+|++||++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4678999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred -CCCCChHH----HHHhHHHHHhhhccCCCCCccchHHH
Q 007725 210 -SPDDGTIA----DVLRDAKEILMKEDGHHGPRGLLIEE 243 (591)
Q Consensus 210 -~P~~~~a~----~~L~~a~~~l~~~~~a~~~~~~~i~e 243 (591)
+|++..+| .+++.+...++++.++...+++.++-
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999998888888743
No 112
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.97 E-value=4.5e-11 Score=127.44 Aligned_cols=133 Identities=16% Similarity=0.014 Sum_probs=109.9
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc----
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA---- 177 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP---- 177 (591)
.+..+..+|.+++..|+|++|+++|.+|+++.+.....+.......+|.|+|.+|..+|+|++|+.+|++++++.+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888999999999999999999999998654322222222345789999999999999999999999998754
Q ss_pred ----cchHHHHHhccchhhh--hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725 178 ----KNVKALYRRGQAYKDI--GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 234 (591)
Q Consensus 178 ----~~~~a~~~rg~al~~l--g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~ 234 (591)
..+..++++|.++..+ ++|++|+.+|++|++++|++++++..++.+...++......
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 192 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ 192 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHH
Confidence 4678899999888765 57999999999999999999999999999888776655433
No 113
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.96 E-value=2.2e-11 Score=121.17 Aligned_cols=184 Identities=14% Similarity=0.046 Sum_probs=137.1
Q ss_pred hhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhccc--------ccchHHHHHHHhcccccccccchhHHHHHHH
Q 007725 58 AAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMN--------YEFNAAKMLKKQGNELYSEGRFSNALQKYLL 128 (591)
Q Consensus 58 a~e~l~~~~pee~~a~~~k~~~-~~~~e~~~a~~~~~~~l~--------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~k 128 (591)
..+......|+....+...... ...++++.+...+++.+. ..+..+..+..+|..++..|+|++|+.+|.+
T Consensus 15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 15 YFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp SCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333344445544444433111 122345556655555555 3677788999999999999999999999999
Q ss_pred hhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc--------ccchHHHHHhccchhhhhhHHHHh
Q 007725 129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--------AKNVKALYRRGQAYKDIGRLEEAV 200 (591)
Q Consensus 129 AL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld--------P~~~~a~~~rg~al~~lg~~eeAl 200 (591)
++.+...... ........++.++|.+|...|+|++|+..|++++++. |....+++++|.+|...|++++|+
T Consensus 95 al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 95 ALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998521100 0001134578999999999999999999999999885 788999999999999999999999
Q ss_pred hhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725 201 SDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 242 (591)
Q Consensus 201 ~~lekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~ 242 (591)
.+|++++.+ +|....++..++.+....++..++...+...+.
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998 666677888999999888887777666666554
No 114
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.96 E-value=3.4e-11 Score=131.70 Aligned_cols=123 Identities=7% Similarity=0.017 Sum_probs=109.0
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
.+++.|...+.+++...+..+..+.++|..+++.|+|++|+..|++++++.|.++. +|+++|.+|..+|+|
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---------~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKF 90 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---------HHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence 45677888888888888999999999999999999999999999999999988765 799999999999999
Q ss_pred hhhhhhcceeeeccccchHHHHHhccc--hhhhhhHHHHhhhcc-----------cccccCCCCC
Q 007725 163 DECIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLS-----------NAHEVSPDDG 214 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a~~~rg~a--l~~lg~~eeAl~~le-----------kAl~l~P~~~ 214 (591)
++|++.|+++++++|++..++++++.+ +...|++++|++.++ +++.++|++.
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 999999999999999999999999999 889999999999999 9999998753
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.95 E-value=4.6e-11 Score=108.00 Aligned_cols=116 Identities=7% Similarity=0.009 Sum_probs=101.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+.+.+...+..+..+..+|.+++..|+|++|+..|.+++.+.|.++. +|+++|.||..+|+|+
T Consensus 28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKFR 98 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHhccHH
Confidence 4556777777777778888899999999999999999999999999999888765 7999999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccc--hhhhhhHHHHhhhcccccc
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~a--l~~lg~~eeAl~~lekAl~ 208 (591)
+|+..|+++++++|.+..++..++.+ +...|++++|+..++++..
T Consensus 99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 99 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999988555554 8889999999999887643
No 116
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.95 E-value=2.2e-11 Score=108.38 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=77.8
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh-------HHHHH
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVL 220 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~-------a~~~L 220 (591)
++.|+|.+|++.|+|++|+..|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++.. ++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999998765 44555
Q ss_pred hHHHHHhhhccCCCCCccch
Q 007725 221 RDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 221 ~~a~~~l~~~~~a~~~~~~~ 240 (591)
+.+...+++...+...++..
T Consensus 90 g~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555554444444433
No 117
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=9.9e-11 Score=99.01 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=83.8
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLR 221 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~ 221 (591)
.|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++ ..++..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999998 77888999
Q ss_pred HHHHHhhhccCCCCCcc
Q 007725 222 DAKEILMKEDGHHGPRG 238 (591)
Q Consensus 222 ~a~~~l~~~~~a~~~~~ 238 (591)
.+...++....+...++
T Consensus 86 ~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 86 LAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHhHhhhHhHHH
Confidence 99998887776655544
No 118
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.94 E-value=8.9e-11 Score=122.34 Aligned_cols=125 Identities=7% Similarity=0.004 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhhhcccccchHH-----------------HHHHHhcccccccccchhHHHHHHHhhhcccccccccccee
Q 007725 82 PEEIATMRARIDAQMNYEFNAA-----------------KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTL 144 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a-----------------~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l 144 (591)
..++..|...|.+.+...+... ..+.++|.++++.|+|++|+.+|.++|.++|.++.
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------ 265 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK------ 265 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH------
T ss_pred cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 3445566666766666655544 48899999999999999999999999999998765
Q ss_pred eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch-hhhhhHHHHhhhcccccccCCCCCh
Q 007725 145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 145 ~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al-~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
+|+++|.||+.+|+|++|+.+|+++++++|++..+++.++.+. ...++++++...|++++.+.|+++.
T Consensus 266 ---a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 266 ---ALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 8999999999999999999999999999999999999999985 4567788899999999999998764
No 119
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.94 E-value=8.8e-11 Score=107.96 Aligned_cols=103 Identities=9% Similarity=0.013 Sum_probs=93.8
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~ 161 (591)
..+++.+...+.+.+...+..+..+.++|.+++..|+|++|+.+|.+++.++|.++. +|+++|.||+.+|+
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK---------AWSRLGLARFDMAD 94 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHccC
Confidence 345677888888888889999999999999999999999999999999999998865 89999999999999
Q ss_pred chhhhhhcceeeeccccchHHHHHhccchhhh
Q 007725 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193 (591)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l 193 (591)
|++|+.+|+++++++|++..+|++++.+....
T Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 95 YKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998888776544
No 120
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.93 E-value=2.9e-11 Score=120.22 Aligned_cols=120 Identities=12% Similarity=0.039 Sum_probs=101.5
Q ss_pred HHHHHHHhhhhcccc--------cchHHHHHHHhcccccccccchhHHHHHHHhhhcc-----ccccccccceeeeeecc
Q 007725 84 EIATMRARIDAQMNY--------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-----QGIHSSEGRTLLLACSL 150 (591)
Q Consensus 84 e~~~a~~~~~~~l~~--------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~-----p~~~~~e~~~l~~~~~~ 150 (591)
+++.+...+...+.. .+..+..+..+|..++..|+|++|+.+|.+++.+. +..+. ...++.
T Consensus 84 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 157 (311)
T 3nf1_A 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------VAKQLN 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------HHHHHH
Confidence 344555555555443 46678899999999999999999999999999985 22222 344789
Q ss_pred ccceeeeccccchhhhhhcceeeec--------cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAY--------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~l--------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
++|.+|...|+|++|+..|++++++ +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 8889999999999999999999999999999974
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.91 E-value=5.5e-11 Score=121.23 Aligned_cols=134 Identities=5% Similarity=-0.174 Sum_probs=66.5
Q ss_pred HHHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 87 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 87 ~a~~~~~~~l~-~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
.+...+++++. ..++....+..+|..+...|++++|+..|+++|.+.|.++. .+|.+++.++.+.|++++|
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------HHHHHHHHHHHHhcCHHHH
Confidence 34444444444 34444555555555555555555555555555555444321 0345555555555555555
Q ss_pred hhhcceeeeccccchHHHHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 166 IKVGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 166 i~~~~~AL~ldP~~~~a~~~rg~al~-~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
+..|+++++++|.+..+|...+.... ..|++++|+..|+++++++|++..++..+..+...++
T Consensus 154 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 154 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 55555555555555544443333322 1455555555555555555555555555544444443
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=1.6e-10 Score=129.24 Aligned_cols=170 Identities=9% Similarity=-0.035 Sum_probs=143.4
Q ss_pred CchhhhhhhhhcCCChhHHHHHHHHhhcCC-hH----------HHHHHHHhhhhcccccchHHHHHHHhcccccccc--c
Q 007725 52 PEDLKCAAEQLTHTPPEEVAEIGEKLANAS-PE----------EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--R 118 (591)
Q Consensus 52 pe~~~~a~e~l~~~~pee~~a~~~k~~~~~-~~----------e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g--~ 118 (591)
.+++....+++....|+...++..|..... .. .++.+..-++..+..+++...+|..++.++.+.+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 345555666677777777777666521111 11 2667778888888999999999999999999999 6
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccccchHHHHHhccchhhh----
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---- 193 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l---- 193 (591)
|++++++|.++|+++|.+.. +|.+|+.++.+++ .+++++++++++|+++|.|..+|++|+.++..+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~---------aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 125 WARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhhcccccc---------HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 69999999999999998865 8999999999999 899999999999999999999999999998875
Q ss_pred ----------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 194 ----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 194 ----------g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
+.+++|++++.+|+.++|++..+|..++-+....+++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 7899999999999999999999999999887776553
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.89 E-value=1.1e-10 Score=118.96 Aligned_cols=130 Identities=8% Similarity=-0.015 Sum_probs=113.9
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccc-------cccc-------hhHHHHHHHhhh-ccccccccccceeeeeecc
Q 007725 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYS-------EGRF-------SNALQKYLLAKK-NLQGIHSSEGRTLLLACSL 150 (591)
Q Consensus 86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~-------~g~y-------~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~ 150 (591)
..+...+++.+...+..+..|..+|..+.. .|++ ++|+..|++|+. +.|.+.. +|.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~---------~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---------LYF 103 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH---------HHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH---------HHH
Confidence 456677777888888999999999988763 5776 899999999999 6887754 799
Q ss_pred ccceeeeccccchhhhhhcceeeeccccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~-a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~ 224 (591)
+++.++.+.|++++|+..|+++|+++|.++. +|+++|.++.+.|++++|+..|++|++++|.+..++.....++
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999987 9999999999999999999999999999998877766554443
No 124
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.89 E-value=8.5e-11 Score=127.64 Aligned_cols=112 Identities=8% Similarity=-0.064 Sum_probs=98.2
Q ss_pred hHHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeee
Q 007725 82 PEEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLL 146 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~---------------a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~ 146 (591)
..++..|...|.+++...+.. +..+.++|.++++.|+|++|+.+|.++|.++|.++.
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 352 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK-------- 352 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH--------
Confidence 345677888888888877766 789999999999999999999999999999998765
Q ss_pred eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhh
Q 007725 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 202 (591)
Q Consensus 147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~ 202 (591)
+|+++|.||+.+++|++|+.+|+++|+++|++..+++.++.++..++++++|...
T Consensus 353 -a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 353 -GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988754
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=1e-10 Score=118.32 Aligned_cols=135 Identities=14% Similarity=0.036 Sum_probs=109.5
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.|...+...+...+..+..+.++|..+++.|+|++|+..|.+++++.|.++. +|+++|.+|..+|+|
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---------AHFFLGQCQLEMESY 88 (281)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence 34666777888888888888999999999999999999999999999999998765 799999999999999
Q ss_pred hhhhhhcceeeeccccchHH-------HHHhc----------------------cchhhhhhHHHHhhhcccccccCCCC
Q 007725 163 DECIKVGSEVLAYDAKNVKA-------LYRRG----------------------QAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~~a-------~~~rg----------------------~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
++|+..|+++++++|++... ..+++ ...+..|++++|++.|+++++++|++
T Consensus 89 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 89 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCH
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 99999999999999976211 11111 01124689999999999999999988
Q ss_pred ChHHHHHhHHHHH
Q 007725 214 GTIADVLRDAKEI 226 (591)
Q Consensus 214 ~~a~~~L~~a~~~ 226 (591)
..+...+..+...
T Consensus 169 ~~~~~~l~~~~~~ 181 (281)
T 2c2l_A 169 GHIRAQQACIEAK 181 (281)
T ss_dssp HHHTHHHHHHHHH
T ss_pred hhhhhHHHHHHHH
Confidence 7666666554433
No 126
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.86 E-value=7.7e-11 Score=123.16 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=128.3
Q ss_pred HHHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 84 EIATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 84 e~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
++..|...+++++.. ....+..+..+|..++..|+|++|+.+|.+|+.+.+.... .......++.++|.||.
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFL 195 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHH
Confidence 455566666666553 4457899999999999999999999999999998776532 11223458999999999
Q ss_pred ccccchhhhhhcceeeeccccc------hHHHHHhccchhhhhhHHHHhhhcccccc-----cC-CCCChHHHHHhHHHH
Q 007725 158 KTKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VS-PDDGTIADVLRDAKE 225 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~------~~a~~~rg~al~~lg~~eeAl~~lekAl~-----l~-P~~~~a~~~L~~a~~ 225 (591)
.+|+|++|+..|++++++.+.. +.+++++|.+|..+|++++|+.+|++++. .+ |....++..++.+..
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 9999999999999999986544 36999999999999999999999999999 46 777788999999999
Q ss_pred HhhhccCCCCCccchHH
Q 007725 226 ILMKEDGHHGPRGLLIE 242 (591)
Q Consensus 226 ~l~~~~~a~~~~~~~i~ 242 (591)
.+++...+...++..+.
T Consensus 276 ~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 98887777666665553
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=8.4e-10 Score=123.42 Aligned_cols=135 Identities=7% Similarity=-0.092 Sum_probs=125.7
Q ss_pred HHHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y 156 (591)
.+...+...+..+++...+|..++.++...++ |++++..|.++|..+|.+.. +|++|+.++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---------aW~hR~w~l 117 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLL 117 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH
Confidence 46677888888999999999999999999888 99999999999999999866 899999999
Q ss_pred eccc--cchhhhhhcceeeeccccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725 157 LKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (591)
Q Consensus 157 ~~lg--~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~ 230 (591)
.+++ +|++++++|+++|++||.|..+|+.|+.++..++ .+++++++++++++++|.|..+|..++.+...+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 9999 6699999999999999999999999999999999 899999999999999999999999999998887544
No 128
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.84 E-value=8.9e-11 Score=103.64 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=86.2
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
.++++|.++++.|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccchH
Q 007725 228 MKEDGHHGPRGLLI 241 (591)
Q Consensus 228 ~~~~~a~~~~~~~i 241 (591)
++..++...++..+
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88776655555444
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=2.3e-10 Score=99.14 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=93.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+++.+...+.....+..+|..++..|+|++|+.+|.+++.+.|.++. +++++|.||.+.|+|+
T Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---------GYTRKAAALEAMKDYT 101 (133)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHHhhHH
Confidence 4556777777777778888899999999999999999999999999999888765 7999999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhh
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~ 195 (591)
+|+..|+++++++|.+..+++.++.++..+|+
T Consensus 102 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987764
No 130
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=3.5e-11 Score=122.93 Aligned_cols=130 Identities=10% Similarity=-0.020 Sum_probs=102.8
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~- 179 (591)
..+..+.++|.++...|+|++|+.+|.+++.+.+.... ......+|.|+|.+|.. |+|++|+.+|++||++.+..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~ 149 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE 149 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC
Confidence 45778999999999999999999999999998654321 01123478899999999 99999999999999998754
Q ss_pred -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhccCCC
Q 007725 180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKEDGHH 234 (591)
Q Consensus 180 -----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~l~~~~~a~ 234 (591)
..+++++|.+|..+|+|++|+.+|++++.+.|++.. ++..++.+...+++...+.
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 678999999999999999999999999998776542 4444555555555544433
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.3e-10 Score=100.06 Aligned_cols=101 Identities=9% Similarity=0.029 Sum_probs=90.7
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.+...+.+.+...+..+..+.++|.+++..|+|++|+..|.+++.++|.++. +|+++|.||..+|+|
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR---------AYIRKATAQIAVKEY 88 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHhCH
Confidence 45667888888888888999999999999999999999999999999999998865 799999999999999
Q ss_pred hhhhhhcceeeecc------ccchHHHHHhccchhh
Q 007725 163 DECIKVGSEVLAYD------AKNVKALYRRGQAYKD 192 (591)
Q Consensus 163 ~eAi~~~~~AL~ld------P~~~~a~~~rg~al~~ 192 (591)
++|+..|+++++++ |.+..++..++.+...
T Consensus 89 ~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 89 ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999 8888888777766543
No 132
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=1.5e-10 Score=96.80 Aligned_cols=92 Identities=12% Similarity=0.036 Sum_probs=66.6
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHh
Q 007725 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR 186 (591)
Q Consensus 107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~r 186 (591)
+.+|..++..|+|++|+..|.+++...|.++. .+|+++|.||..+|+|++|+..|+++++++|++..++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKD--------EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-
Confidence 45566777777777777777777777666531 156777777777777777777777777777777777654
Q ss_pred ccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 187 GQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 187 g~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
+.+.+++..|++++.++|++.
T Consensus 75 -------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -------HHHHHHHHHHCCTTHHHHCCS
T ss_pred -------HHHHHHHHHHHHHhccCcccc
Confidence 667777777777777777654
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=4.6e-10 Score=116.04 Aligned_cols=170 Identities=9% Similarity=-0.091 Sum_probs=146.5
Q ss_pred CCchhhhhhhhhcCCChhHHHHHHHH---hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccc----ccc---ccch
Q 007725 51 RPEDLKCAAEQLTHTPPEEVAEIGEK---LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSE---GRFS 120 (591)
Q Consensus 51 ~pe~~~~a~e~l~~~~pee~~a~~~k---~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~----~~~---g~y~ 120 (591)
..++.....+.+....|+...++..| +.......++.+..-+...+..+++...++...+.++ ... +++.
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34556667777778888888877666 2222213566777888888889999999999999888 555 7899
Q ss_pred hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch--hhhhhcceeeeccccchHHHHHhccchhhhhh---
Q 007725 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR--- 195 (591)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~--eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~--- 195 (591)
+++.+|.++|..+|.+.. +|.+|+.|+.++++++ +++++|+++|++||.|..+|++|+.++..+++
T Consensus 128 ~EL~~~~~~l~~~pkny~---------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHH---------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 999999999999999866 8999999999999999 99999999999999999999999999999988
Q ss_pred ---HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 196 ---LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 196 ---~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
++++++++++++.++|+|..+|..++.+...+++
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999888764
No 134
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.82 E-value=2.5e-10 Score=106.61 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=82.0
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccch----------hHHHHHHHhhhccccccccccceeeeeeccccc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS----------NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM 153 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~----------eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla 153 (591)
.++.+...++..+..+++.++.+.++|.++...++|+ +|+.+|++||+++|..+. +|+|+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------A~~~LG 87 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---------HHHHHH
Confidence 4788999999999999999999999999999998865 999999999999999876 899999
Q ss_pred eeeeccc-----------cchhhhhhcceeeeccccchH
Q 007725 154 SCYLKTK-----------QYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 154 ~~y~~lg-----------~y~eAi~~~~~AL~ldP~~~~ 181 (591)
.+|..+| +|++|+++|++||+++|++..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 9999885 899999999999999999853
No 135
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.81 E-value=3.2e-10 Score=103.97 Aligned_cols=91 Identities=7% Similarity=-0.047 Sum_probs=80.8
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.+..+..+.++|.++++.|+|++|+..|.++|.++|.++. +|+++|.||..+|+|++|+.+|+++++++|+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK---------ALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH---------HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 6667889999999999999999999999999999998865 8999999999999999999999999999999
Q ss_pred ch-HHHHHhccchhhhhhHHH
Q 007725 179 NV-KALYRRGQAYKDIGRLEE 198 (591)
Q Consensus 179 ~~-~a~~~rg~al~~lg~~ee 198 (591)
+. .....++.+...++++.+
T Consensus 130 ~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 130 AASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp GHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 98 566677777766655544
No 136
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.80 E-value=3.6e-10 Score=92.10 Aligned_cols=81 Identities=26% Similarity=0.328 Sum_probs=43.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
+..+..+|..++..|+|++|+.+|.+++.+.|.++. +++++|.||.+.|+|++|+..|+++++++|++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 79 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH
Confidence 344555555555555555555555555555544432 44555555555555555555555555555555555
Q ss_pred HHHhccchhh
Q 007725 183 LYRRGQAYKD 192 (591)
Q Consensus 183 ~~~rg~al~~ 192 (591)
++++|.++..
T Consensus 80 ~~~l~~~~~~ 89 (91)
T 1na3_A 80 KQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=2.7e-10 Score=97.81 Aligned_cols=104 Identities=10% Similarity=-0.054 Sum_probs=93.5
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+.+.+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++. +++++|.+|...|+++
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---------AYGRMGLALSSLNKHV 97 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---------HHHHHHHHHHHhCCHH
Confidence 4555666666666667777889999999999999999999999999999888765 7899999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhH
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 196 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ 196 (591)
+|+..|+++++++|++..+++.++.++..+|++
T Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 98 EAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998876
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=1.3e-10 Score=117.50 Aligned_cols=136 Identities=13% Similarity=0.006 Sum_probs=110.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee-------c
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-------Y 175 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~-------l 175 (591)
...++.+|..++..++|++|+.+|.+++.+.+..... .....+|.++|.||..+|+|++|+..|+++++ .
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 3455678999999999999999999999976554321 11233689999999999999999999999994 4
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhc-cCCCCCccchH
Q 007725 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKE-DGHHGPRGLLI 241 (591)
Q Consensus 176 dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~-~~a~~~~~~~i 241 (591)
.+..+.+|+++|.+|..+|+|++|+.++++++++.+.. ..++..++.+...+++. +++...++..+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55677899999999999999999999999999987644 56788999999988853 66655555555
No 139
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.78 E-value=2.3e-10 Score=119.57 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=105.0
Q ss_pred HHHHHHHhhhhcccc-------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725 84 EIATMRARIDAQMNY-------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156 (591)
Q Consensus 84 e~~~a~~~~~~~l~~-------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y 156 (591)
++..+...+.+++.. .+..+..+..+|..+...|+|++|+.+|.+++.+.+.... ......++.|+|.||
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCK 234 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Confidence 344455555554443 5667789999999999999999999999999998775532 222345799999999
Q ss_pred eccccchhhhhhcceeee-----cc-ccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 157 LKTKQYDECIKVGSEVLA-----YD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~-----ld-P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
..+|+|++|+..|+++++ .+ |..+.+++++|.+|..+|++++|+.+|++++.+.+.
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 46 889999999999999999999999999999998543
No 140
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=8.3e-11 Score=122.84 Aligned_cols=200 Identities=14% Similarity=0.050 Sum_probs=144.4
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHH---HHHHHh--hcCChHHHHHHHHhhhhcccc------cchHHHHHH
Q 007725 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVA---EIGEKL--ANASPEEIATMRARIDAQMNY------EFNAAKMLK 107 (591)
Q Consensus 39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~---a~~~k~--~~~~~~e~~~a~~~~~~~l~~------~~~~a~~lk 107 (591)
+...+...+...+.++....+++.....|++.. .....+ ......+++.+...+++.+.. .+..+..+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 444455556666777766666655444444322 111111 111223455566666665554 577889999
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-----------------chhhhhhcc
Q 007725 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------YDECIKVGS 170 (591)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~-----------------y~eAi~~~~ 170 (591)
.+|..++..|+|++|+.+|.+++.+.+.... ......+|.++|.+|...|+ |++|+..|.
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGD---RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999998543211 11234589999999999999 999999999
Q ss_pred eeeecc------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhccCCCCCcc
Q 007725 171 EVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 171 ~AL~ld------P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
+++++. +....+++++|.+|..+|++++|+.+|++++.+.|.... ++..++.+....++...+...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 998874 456779999999999999999999999999999887555 77788888777777666555555
Q ss_pred chH
Q 007725 239 LLI 241 (591)
Q Consensus 239 ~~i 241 (591)
..+
T Consensus 288 ~al 290 (411)
T 4a1s_A 288 RTL 290 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=2.1e-10 Score=96.11 Aligned_cols=87 Identities=21% Similarity=0.176 Sum_probs=80.8
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHH
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKE 225 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~ 225 (591)
+++++|.+|+..|+|++|+..|+++++++|.+..+++++|.++..+|++++|+.+|+++++++|+ +..++..++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999 9999999999887
Q ss_pred Hh-hhccCCC
Q 007725 226 IL-MKEDGHH 234 (591)
Q Consensus 226 ~l-~~~~~a~ 234 (591)
.+ ++.+++.
T Consensus 88 ~~~~~~~~A~ 97 (112)
T 2kck_A 88 YIEGKEVEAE 97 (112)
T ss_dssp TCSSCSHHHH
T ss_pred HHhCCHHHHH
Confidence 77 6655443
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=4.8e-10 Score=106.29 Aligned_cols=96 Identities=4% Similarity=-0.093 Sum_probs=82.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
+..+.++|.+++..|+|++|+.+|.+++.+.|.++. +|+++|.||..+|+|++|+..|+++++++|++..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK---------ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 378999999999999999999999999999888765 79999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHh-hhccccc
Q 007725 183 LYRRGQAYKDIGRLEEAV-SDLSNAH 207 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl-~~lekAl 207 (591)
+..++.++..++++.++. ..|.+.+
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998887 4444443
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.75 E-value=1.8e-10 Score=120.53 Aligned_cols=156 Identities=13% Similarity=-0.013 Sum_probs=125.8
Q ss_pred HHHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 84 EIATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 84 e~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
++..|...+.+++.. .+..+..+..+|..++..|+|.+|+.+|.+++.+.+..... ......++.++|.||.
T Consensus 116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYD 193 (378)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHH
Confidence 445566555555443 45578899999999999999999999999999987764320 1124558899999999
Q ss_pred ccccchhhhhhcceeeeccc------cchHHHHHhccchhhhhhHHHHhhhcccccc-----cCCCCChHHHHHhHHHHH
Q 007725 158 KTKQYDECIKVGSEVLAYDA------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~-----l~P~~~~a~~~L~~a~~~ 226 (591)
.+|+|++|+..|.+++++.+ ....+++++|.+|..+|++++|+.+|++++. .+|....++..++.+...
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 99999999999999998743 3467899999999999999999999999999 788778889999999988
Q ss_pred hhhccCCCCCccchH
Q 007725 227 LMKEDGHHGPRGLLI 241 (591)
Q Consensus 227 l~~~~~a~~~~~~~i 241 (591)
+++.+.+...++..+
T Consensus 274 ~g~~~~A~~~~~~al 288 (378)
T 3q15_A 274 AGQTQKAFQFIEEGL 288 (378)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 887766555544443
No 144
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.75 E-value=6.3e-10 Score=90.64 Aligned_cols=80 Identities=30% Similarity=0.434 Sum_probs=76.0
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+++++|.+|...++|++|+..|+++++++|++..+++++|.+|...|++++|+.+|++++.++|++..++..++.+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999998887654
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.74 E-value=3.1e-10 Score=98.68 Aligned_cols=104 Identities=9% Similarity=0.061 Sum_probs=87.9
Q ss_pred HHHHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725 84 EIATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (591)
Q Consensus 84 e~~~a~~~~~~~l~~---~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg 160 (591)
+++.+...+++.+.. .+..+..+..+|.+++..|+|++|+.+|.+++++.|.++. +++++|.||.++|
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g 75 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---------LRVFYAMVLYNLG 75 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHcC
Confidence 344566666667776 5888999999999999999999999999999999999876 8999999999999
Q ss_pred cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
+|++|+..|+++++++|+++... .+..|+..|.+.+
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~-----------~~~~ai~~~~~~l 111 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQ-----------SYKQAILFYADKL 111 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHH-----------HTHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHhCCCcHHHH-----------HHHHHHHHHHHHH
Confidence 99999999999999999988654 4666666666554
No 146
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.74 E-value=1e-10 Score=120.91 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=123.8
Q ss_pred HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725 85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (591)
Q Consensus 85 ~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~ 158 (591)
+..+...+++.+.. .+..+..+..+|..++..|+|++|+.+|.+++.+.+.... ......++.++|.+|..
T Consensus 63 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 63 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHH
Confidence 44444444444332 4566889999999999999999999999999998776532 12234478999999999
Q ss_pred ccc--------------------chhhhhhcceeeec------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 159 TKQ--------------------YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 159 lg~--------------------y~eAi~~~~~AL~l------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
.|+ |++|+..|.+++.+ .|....+++++|.+|..+|++++|+.+|++++.+.|.
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 999 99999999999987 5677889999999999999999999999999999877
Q ss_pred CCh------HHHHHhHHHHHhhhccCCCCCccchH
Q 007725 213 DGT------IADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 213 ~~~------a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
... ++..++.+....++...+...+...+
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 655 78888888888877766655555544
No 147
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.74 E-value=8.5e-11 Score=104.44 Aligned_cols=135 Identities=14% Similarity=0.115 Sum_probs=106.4
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~- 179 (591)
..+..+..+|..++..|+|++|+.+|.+++.+.+.... ......++.++|.+|...|+|++|+..|++++++.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 34668899999999999999999999999998765432 11233478899999999999999999999999887653
Q ss_pred -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCCCCcc
Q 007725 180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRG 238 (591)
Q Consensus 180 -----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~~~a~~~~~ 238 (591)
..+++++|.++..+|++++|+.++++++.+.+.. ..++..++.+....++...+....+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7789999999999999999999999999875432 3456667777777666554444333
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=2.7e-10 Score=106.70 Aligned_cols=138 Identities=12% Similarity=-0.044 Sum_probs=104.6
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-----
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----- 175 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l----- 175 (591)
..+..+..+|..++..|+|++|+.+|.+++.+...... ......++.++|.+|...|+|++|+..|.+++++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 45778889999999999999999999999986543221 1123457889999999999999999999999988
Q ss_pred -cc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 176 -DA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 176 -dP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~------~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
++ ....+++++|.++..+|++++|+.++++++.+.+... .++..++.+....++...+....+..+
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44 4567899999999999999999999999987754322 234667777777766665554444444
No 149
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.73 E-value=2.1e-09 Score=114.48 Aligned_cols=136 Identities=11% Similarity=0.019 Sum_probs=113.9
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccc---cccchhHHHHHHHhhhccccccccccceeeeeeccccce----e
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS----C 155 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~----~ 155 (591)
.+++.|...+++++...|+.+..+..+|..++. .+++.+|++.|++++.++|.++. ++.+++. +
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---------~~~~l~~~~~~~ 222 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---------LKVLLALKLHKM 222 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------HHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------HHHHHHHHHHHH
Confidence 456788888999999999999999999988665 46678899999999999988765 5556654 5
Q ss_pred eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
+...+++++|++.|++++.++|.+..+++++|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999999999999999999999886543
No 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=9e-10 Score=112.40 Aligned_cols=111 Identities=12% Similarity=0.012 Sum_probs=94.9
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~- 179 (591)
..+..+.++|.++.. |+|++|+.+|.+++.+.+.... ......+|.|+|.+|.++|+|++|+..|++++++.|.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 356889999999999 9999999999999999775421 11124478999999999999999999999999987754
Q ss_pred -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725 180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 180 -----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a 216 (591)
..+++++|.++..+|++++|+.+|++++ ++|.+...
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 4588999999999999999999999999 99987643
No 151
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.73 E-value=2.1e-10 Score=118.54 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=124.4
Q ss_pred HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725 85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (591)
Q Consensus 85 ~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~ 158 (591)
+..+...+.+.+.. .+..+..+..+|..++..|+|++|+.+|.+++.+.+..+. ......+|.++|.+|..
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHH
Confidence 44555545444432 4556778999999999999999999999999998776532 11234478999999999
Q ss_pred cccchhhhhhcceeeeccccc------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHH
Q 007725 159 TKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEI 226 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~ 226 (591)
.|+|++|+..|++++++.+.. ..+++++|.+|...|++++|+.+|++++.+.+.. ..++..++.+...
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 8899999999999999999999999999986654 4577788888888
Q ss_pred hhhccCCCCCccchH
Q 007725 227 LMKEDGHHGPRGLLI 241 (591)
Q Consensus 227 l~~~~~a~~~~~~~i 241 (591)
+++...+...++..+
T Consensus 320 ~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHL 334 (406)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 887777666655555
No 152
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.72 E-value=1.6e-09 Score=114.59 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=99.7
Q ss_pred HHHHHHHhhhhccc----------------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeee
Q 007725 84 EIATMRARIDAQMN----------------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA 147 (591)
Q Consensus 84 e~~~a~~~~~~~l~----------------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~ 147 (591)
+++.|...|.+.+. ..+..+..+.++|.++++.|+|++|+.+|.++|+++|.++.
T Consensus 238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 308 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK--------- 308 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------
T ss_pred CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH---------
Confidence 45566666666666 56777899999999999999999999999999999988765
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l 203 (591)
+|+++|.||..+|+|++|+.+|+++++++|++..++..++.++..+++++++...+
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999887654
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=4.1e-10 Score=99.08 Aligned_cols=95 Identities=12% Similarity=0.028 Sum_probs=88.3
Q ss_pred eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
..|+++|.+|+..|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+...
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccchH
Q 007725 227 LMKEDGHHGPRGLLI 241 (591)
Q Consensus 227 l~~~~~a~~~~~~~i 241 (591)
+++...+...+...+
T Consensus 90 ~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 90 MESYDEAIANLQRAY 104 (137)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 988777666666555
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=5e-10 Score=113.11 Aligned_cols=125 Identities=11% Similarity=0.183 Sum_probs=99.4
Q ss_pred HHHHHHHhhhhccccc------chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 84 EIATMRARIDAQMNYE------FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~------~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
+++.+...+...+... ...+..+.++|.+++..|+|++|+.+|.+++.+....+. .......+|+|+|.||.
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~ 207 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALY 207 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHH
Confidence 4455665565555421 123567999999999999999999999999975443311 12234558999999999
Q ss_pred ccccchhhhhhcceeeeccccc------hHHHHHhccchhhhhh-HHHHhhhcccccccC
Q 007725 158 KTKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGR-LEEAVSDLSNAHEVS 210 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~------~~a~~~rg~al~~lg~-~eeAl~~lekAl~l~ 210 (591)
++|+|++|+..|+++|++.+.. +.+|+++|.+|..+|+ +++|+.+|++|+.+.
T Consensus 208 ~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999998665 8899999999999995 699999999998763
No 155
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=3.9e-10 Score=117.67 Aligned_cols=125 Identities=16% Similarity=0.116 Sum_probs=110.7
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec----
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---- 175 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l---- 175 (591)
+..+..+..+|..++..|+|++|+.+|.+++.+.|.++. ....+|+++|.+|...|+|++|+..|++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR-----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 456778889999999999999999999999999887652 12347899999999999999999999999998
Q ss_pred --cccchHHHHHhccchhhhhhHHHHhhhccccccc------CCCCChHHHHHhHHHHHhhh
Q 007725 176 --DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 176 --dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l------~P~~~~a~~~L~~a~~~l~~ 229 (591)
+|..+.+++++|.+|..+|++++|+.+|++++.+ .|....++..++.+...+++
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 7889999999999999999999999999999998 45556688888888888887
No 156
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=1.2e-09 Score=111.52 Aligned_cols=131 Identities=13% Similarity=0.040 Sum_probs=110.7
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y 162 (591)
++++.|...+.......+..+ .++.+|..+++.++|++|+.+|++++....... ...+++++|.++..+|++
T Consensus 116 g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~-------~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 116 GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL-------AGAAGVAHGVAAANLALF 187 (282)
T ss_dssp TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH-------HHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc-------HHHHHHHHHHHHHHCCCH
Confidence 356678888888887888888 999999999999999999999998877531110 022689999999999999
Q ss_pred hhhhhhcceeeecc--cc-chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 163 DECIKVGSEVLAYD--AK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 163 ~eAi~~~~~AL~ld--P~-~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
++|+..|++++.-. |. .+.+++++|.|+.++|+.++|+..|++++.++|+ ..++..|..
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999998544 65 7789999999999999999999999999999998 777666654
No 157
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=7.9e-10 Score=109.56 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=94.7
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK- 158 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~- 158 (591)
+++.+...+.+..... .+..+..+|..+.. .+++++|+.+|+++++.. ++. +++++|.+|..
T Consensus 57 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~---------a~~~lg~~~~~~ 123 (273)
T 1ouv_A 57 NLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAE---------GCASLGGIYHDG 123 (273)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---------HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Ccc---------HHHHHHHHHHcC
Confidence 3444555555554432 56778888888888 888888888888888763 322 67888888888
Q ss_pred ---cccchhhhhhcceeeeccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 159 ---TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 159 ---lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
.+++++|+..|+++++++ ++.+++++|.+|.. .+++++|+.+|++++++. +..++..++.+...
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHH 194 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHc
Confidence 888888888888888765 67788888888887 888888888888888763 45677777777666
No 158
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.68 E-value=7.9e-10 Score=93.89 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=68.9
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh--HHHHHhHHHH
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKE 225 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~--a~~~L~~a~~ 225 (591)
+++++|.+|++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|.+.. ....+..+..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999886543 3344444433
No 159
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.67 E-value=2.1e-10 Score=114.27 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=114.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-----------------
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------------- 161 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~----------------- 161 (591)
.+..+..+..+|..++..|+|++|+..|.+++.+.+.... ......++.++|.+|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 5556888999999999999999999999999998776432 12234478999999999999
Q ss_pred ---chhhhhhcceeeec------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH
Q 007725 162 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI 226 (591)
Q Consensus 162 ---y~eAi~~~~~AL~l------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~ 226 (591)
|++|+..+++++.+ .+....+++++|.+|...|++++|+..|++++.+.+.... ++..++.+...
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999887 4566789999999999999999999999999998776443 77778888777
Q ss_pred hhhccCCCCCccchH
Q 007725 227 LMKEDGHHGPRGLLI 241 (591)
Q Consensus 227 l~~~~~a~~~~~~~i 241 (591)
.++...+...++..+
T Consensus 236 ~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 236 LGEFETASEYYKKTL 250 (338)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 776665554444444
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=2.6e-09 Score=112.13 Aligned_cols=170 Identities=9% Similarity=-0.056 Sum_probs=143.0
Q ss_pred CCchhhhhhhhhcCCChhHHHHHHHHhhcC--ChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-c-cchhHHHHH
Q 007725 51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANA--SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-G-RFSNALQKY 126 (591)
Q Consensus 51 ~pe~~~~a~e~l~~~~pee~~a~~~k~~~~--~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~-g-~y~eAi~~Y 126 (591)
..++.....+.+....|+....+..|-... -...++.+..-+...+..+++...++...+.++... + ++.+++.+|
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 344566667777777888777766652111 111355677777888889999999999999998887 7 899999999
Q ss_pred HHhhhccccccccccceeeeeeccccceeeeccccch--------hhhhhcceeeeccccchHHHHHhccchhhhhh---
Q 007725 127 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--------ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR--- 195 (591)
Q Consensus 127 ~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~--------eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~--- 195 (591)
.++|+.+|.+.. +|.+|+.++.++++++ +++++++++|+++|.|..+|+.|+.++..+++
T Consensus 149 ~k~L~~dpkNy~---------AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 149 HGSLLPDPKNYH---------TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHTSSCTTCHH---------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHhCCCCHH---------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 999999999866 8999999999999998 99999999999999999999999999999987
Q ss_pred ----HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 196 ----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 196 ----~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
++++++++++++.++|+|..+|..+.-+....+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999998887766543
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.65 E-value=3e-09 Score=111.12 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=97.9
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee----
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---- 174 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~---- 174 (591)
....+..+..+|..+...|+|++|+.+|.+++.+.+.... ......++.|+|.||..+|+|++|+..|+++++
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4456888999999999999999999999999998654321 112355799999999999999999999999999
Q ss_pred -ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 175 -YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 175 -ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
.+|..+.+++++|.+|..+|++++|+.++++++++.+.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78989999999999999999999999999999998765
No 162
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.65 E-value=2.4e-09 Score=89.31 Aligned_cols=79 Identities=19% Similarity=0.392 Sum_probs=71.2
Q ss_pred ccccceeeeccccchhhhhhcceeeeccccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHH--HHHhHHHH
Q 007725 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA--DVLRDAKE 225 (591)
Q Consensus 149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~-a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~--~~L~~a~~ 225 (591)
.+++|.+|++.|+|++|+..|+++++++|+++. +|+++|.+|..+|++++|+.+|+++++++|++..++ ..+.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999 999999999999999999999999999999999887 55555544
Q ss_pred Hh
Q 007725 226 IL 227 (591)
Q Consensus 226 ~l 227 (591)
..
T Consensus 83 ~~ 84 (99)
T 2kc7_A 83 FY 84 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 163
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=3.4e-09 Score=109.56 Aligned_cols=134 Identities=7% Similarity=-0.166 Sum_probs=123.4
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeeccccceee----ecc-
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY----LKT- 159 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y----~~l- 159 (591)
.+...+...+..+++...++..++.++...+ ++++++.++.++|..+|.+.. +|++|+.++ ..+
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---------aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---------IWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------HHHHHHHHHHHHHHhcc
Confidence 4677777888889999999999999999999 999999999999999999865 899999999 666
Q ss_pred --ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHH--HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 160 --KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 160 --g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~e--eAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+++++++.+|+++|+++|.|..+|+.|+.++..+++++ ++++.++++++++|.|-.+|.....+...++.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999 99999999999999999999988888777654
No 164
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.63 E-value=3.7e-10 Score=112.40 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=113.6
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.+..+..+..+|..++..|+|++|+.+|.+++.+.+.... ......++.++|.+|...|++++|+..+++++++.+.
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 4455678999999999999999999999999998765432 1123447899999999999999999999999998877
Q ss_pred c------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCCCCccch
Q 007725 179 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 179 ~------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~~~a~~~~~~~ 240 (591)
. ..+++.+|.+|...|++++|+.+|++++.+.+.. ..++..++.+....++.+.+...++..
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6 8899999999999999999999999999987654 236777888887777666554444433
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=6.3e-10 Score=112.39 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=106.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---cccc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---DAKN 179 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l---dP~~ 179 (591)
...++.+|..+...|+|++|+.+|.+++.+.+..... .....+|.++|.+|...|+|++|+..|++++++ .|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 3556678888999999999999999999876544221 112447899999999999999999999999944 4442
Q ss_pred ----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCC-CCCccchH
Q 007725 180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGH-HGPRGLLI 241 (591)
Q Consensus 180 ----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~~~a-~~~~~~~i 241 (591)
+.+++++|.+|..+|+|++|+.+|++++.+.++. ..++..++.+...+++.+.+ ...+++.+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3799999999999999999999999999886431 45778888888888876665 43344433
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.63 E-value=6.3e-09 Score=108.58 Aligned_cols=165 Identities=11% Similarity=-0.003 Sum_probs=138.9
Q ss_pred CchhhhhhhhhcCCChhHHHHHHHHhhcC-------ChH----HHHHHHHhhhhcccccchHHHHHHHhccccccccc--
Q 007725 52 PEDLKCAAEQLTHTPPEEVAEIGEKLANA-------SPE----EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-- 118 (591)
Q Consensus 52 pe~~~~a~e~l~~~~pee~~a~~~k~~~~-------~~~----e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~-- 118 (591)
.+++......+....|+....+..|-... .++ .+.....-+...+..+++...++...+.++...++
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 34566777888888899888877662111 111 14566677777788899999999999999988884
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-chhhhhhcceeeeccccchHHHHHhccchhhh----
Q 007725 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---- 193 (591)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~-y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l---- 193 (591)
|.+++.+|.++|+.+|.+.. +|.+|+.++...+. +++++++++++|+++|.|..+|++|+.++..+
T Consensus 126 ~~~EL~~~~k~l~~dprNy~---------AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 126 WARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 89999999999999999866 89999999999999 59999999999999999999999999999888
Q ss_pred ----------hhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 194 ----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 194 ----------g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
+.++++++++.+++.++|+|..+|..+.-+..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999986665544
No 167
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=1.4e-09 Score=109.86 Aligned_cols=125 Identities=11% Similarity=0.187 Sum_probs=97.9
Q ss_pred HHHHHHHhhhhccccc------chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 84 EIATMRARIDAQMNYE------FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~------~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
+++.+...+.+.+... ...+..+.++|..++..|+|++|+.+|.+++.+....+.. ......+|+|+|.||.
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALY 207 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHH
Confidence 4445666655555322 2247789999999999999999999999999654332210 0111248999999999
Q ss_pred ccccchhhhhhcceeeecccc------chHHHHHhccchhhhhhHHHH-hhhcccccccC
Q 007725 158 KTKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEA-VSDLSNAHEVS 210 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~------~~~a~~~rg~al~~lg~~eeA-l~~lekAl~l~ 210 (591)
++|+|++|+..|++++++.+. .+.+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999999999999999998754 388999999999999999999 77899998764
No 168
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.62 E-value=1.5e-09 Score=107.61 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=94.7
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK- 158 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~- 158 (591)
+++.+...+++.+. +..+.++..+|..+.. .+++++|+.+|.++++.. ++. +++++|.+|..
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~---------a~~~lg~~~~~g 87 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN---------GCHLLGNLYYSG 87 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---------HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH---------HHHHHHHHHhCC
Confidence 45556666666655 4556777888888888 888888888888888763 222 67788888888
Q ss_pred ---cccchhhhhhcceeeeccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 159 ---TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 159 ---lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
.+++++|+..|++++++ +++.+++++|.+|.. .+++++|+.+|+++++++ +..++..++.+...
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 88888888888888776 478888888888888 888888888888888765 45666777766554
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=2.8e-09 Score=90.63 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=88.2
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+.+.+...+.....+..+|..++..|+|++|+..|.+++.+.|.++. ++++++.+|...|+++
T Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~ 94 (125)
T 1na0_A 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYD 94 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHH
Confidence 3445555566666666677788999999999999999999999999999887754 7889999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 194 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg 194 (591)
+|+..|+++++++|++..++++++.++...|
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 95 EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887654
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=3.2e-09 Score=89.43 Aligned_cols=98 Identities=8% Similarity=0.008 Sum_probs=86.6
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+...+..+..+..+|..++..|+|++|+..|.+++.+.|.++. ++.++|.||...|+++
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---------GYSRKAAALEFLNRFE 89 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHH
Confidence 4555666666666677777889999999999999999999999999999888765 7899999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccch
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAY 190 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al 190 (591)
+|+..|+++++++|++..+++.++.+.
T Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 90 EAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999998887764
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=1.9e-08 Score=97.00 Aligned_cols=127 Identities=10% Similarity=-0.018 Sum_probs=104.6
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccc----cchhHHHHHHHhhhccccccccccceeeeeeccccceeeec--
Q 007725 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEG----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-- 158 (591)
Q Consensus 85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~-- 158 (591)
++.+...+++... ...+.++.++|..|.. + ++++|+.+|+++++. .++. +++++|.+|..
T Consensus 34 ~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~---------a~~~Lg~~y~~g~ 99 (212)
T 3rjv_A 34 YQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKS---------GEIVLARVLVNRQ 99 (212)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHH---------HHHHHHHHHHcCC
Confidence 3344444444433 2456788999999988 6 899999999999764 4443 78999999998
Q ss_pred --cccchhhhhhcceeeeccc--cchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 159 --TKQYDECIKVGSEVLAYDA--KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 159 --lg~y~eAi~~~~~AL~ldP--~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
.+++++|+..|++++++.| +++.+++++|.+|.. .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus 100 g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 100 AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 8899999999999999988 579999999999998 88999999999999998 7778888888887654
No 172
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.58 E-value=3.1e-09 Score=91.50 Aligned_cols=100 Identities=10% Similarity=-0.026 Sum_probs=82.5
Q ss_pred HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (591)
Q Consensus 88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~ 167 (591)
+...+.+.+...+..+..+..+|..++..|+|++|+..|.+++.+.|.++. +|+++|.||...|++++|+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV---------AWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHcCCHHHHHH
Confidence 344556666677888899999999999999999999999999999988765 79999999999999999999
Q ss_pred hcceeeeccccc--hHHHHHhccchhhhhhH
Q 007725 168 VGSEVLAYDAKN--VKALYRRGQAYKDIGRL 196 (591)
Q Consensus 168 ~~~~AL~ldP~~--~~a~~~rg~al~~lg~~ 196 (591)
.|+++++++|.+ ..++..+..++..+++.
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence 999999999864 44555555555555443
No 173
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=4.6e-09 Score=107.12 Aligned_cols=150 Identities=9% Similarity=0.032 Sum_probs=126.9
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHh-------cccccccccchhHHHHHHHhhhccccccccccceeeeeeccc---
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQ-------GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN--- 151 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~-------Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N--- 151 (591)
+.+...+...+.+.....+..+++|..+ +.++...+++.+++..|.+++.+.|..-. .+++
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~---------a~~~~~g 89 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN---------ARIAIGG 89 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC---------CEEECCT
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh---------hhhccCC
Confidence 4556667778888888899999999999 89999999999999999999999888754 3344
Q ss_pred ------------------cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725 152 ------------------SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 152 ------------------la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
++.+|...|+|++|++.|+.++..+|++. ++|.+|.++++.++|++|+..|++++...++.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 56788999999999999999999999999 99999999999999999999999888764221
Q ss_pred --ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725 214 --GTIADVLRDAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 214 --~~a~~~L~~a~~~l~~~~~a~~~~~~~i 241 (591)
..++..++.+...+++..++...++.++
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3588999999999988777666655443
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.57 E-value=1.3e-09 Score=96.57 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=90.9
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc----
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA---- 177 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP---- 177 (591)
.+..+..+|..++..|+|++|+.+|.+++.+.+.... ......++.++|.+|...|+|++|+..+++++++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 124 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence 3468899999999999999999999999998765422 122345789999999999999999999999998743
Q ss_pred --cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725 178 --KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (591)
Q Consensus 178 --~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P 211 (591)
....+++.+|.+|..+|++++|+.++++++++..
T Consensus 125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999987654
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=6.9e-09 Score=91.63 Aligned_cols=101 Identities=9% Similarity=-0.026 Sum_probs=88.7
Q ss_pred hHHHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725 82 PEEIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~---a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~ 158 (591)
..++..+...+...+...+.. ...+..+|..++..|+|++|+..|.+++.+.|.++. +|+++|.||..
T Consensus 41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~ 111 (148)
T 2dba_A 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK---------ALYRRSQALEK 111 (148)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH---------HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH---------HHHHHHHHHHH
Confidence 345666777777777777776 889999999999999999999999999999888755 78999999999
Q ss_pred cccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~ 191 (591)
.|+|++|+..|+++++++|++..++..++.+..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999998887776654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=2.1e-09 Score=93.44 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=84.5
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccch---HHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR 221 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~---~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~---~~a~~~L~ 221 (591)
.++++|.+++..|+|++|+..|+++++.+|++. .+++.+|.+|..+|+|++|+.+|++++.++|++ ..++..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 577899999999999999999999999999998 899999999999999999999999999999999 77799999
Q ss_pred HHHHHhhhccCCCCCccchH
Q 007725 222 DAKEILMKEDGHHGPRGLLI 241 (591)
Q Consensus 222 ~a~~~l~~~~~a~~~~~~~i 241 (591)
.+...+++...+...++..+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99998887766655555444
No 177
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=3.2e-09 Score=102.56 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=99.2
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc----cchhhhhhcceeeecc
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----QYDECIKVGSEVLAYD 176 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg----~y~eAi~~~~~AL~ld 176 (591)
..+.++..+|..++..+++++|+.+|+++++. .++. +++++|.+|.. + ++++|+..|++++ +
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~---------a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~ 81 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGD---------ALALLAQLKIR-NPQQADYPQARQLAEKAV--E 81 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHTTS-STTSCCHHHHHHHHHHHH--H
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHH---------HHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--H
Confidence 45678999999999999999999999999885 3433 78999999998 7 8999999999995 6
Q ss_pred ccchHHHHHhccchhh----hhhHHHHhhhcccccccCCC--CChHHHHHhHHHHH
Q 007725 177 AKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEI 226 (591)
Q Consensus 177 P~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~ 226 (591)
+.++.+++++|.+|.. .+++++|+.+|+++++..|. ++.++..|+.+...
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 7899999999999998 88999999999999999883 57888889888765
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=1.2e-08 Score=107.14 Aligned_cols=134 Identities=8% Similarity=-0.123 Sum_probs=123.8
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-c-cch
Q 007725 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-K-QYD 163 (591)
Q Consensus 87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-g-~y~ 163 (591)
.+...+...+..+++...++..++.++...+ ++++++..+.++|..+|.+.. +|..|+.|+..+ + +++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~---------aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ---------VWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHHHCCSCCH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhcCCChH
Confidence 4677778888889999999999999999988 599999999999999999866 899999999988 7 999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhHH--------HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--------EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~e--------eAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+++++|+++|+++|.|..+|+.|+.++..+++++ +++++++++++++|.|..+|...+.+...++.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998 99999999999999999999999998877754
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=4.5e-09 Score=98.20 Aligned_cols=126 Identities=15% Similarity=0.111 Sum_probs=98.6
Q ss_pred HHHHHHhhhhccc------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725 85 IATMRARIDAQMN------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (591)
Q Consensus 85 ~~~a~~~~~~~l~------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~ 158 (591)
++.+...+++.+. ..+..+..+.++|..+...|+|++|+.+|.+++.+....+.. ......++.++|.+|..
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~ 119 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALH 119 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHH
Confidence 3444444444444 455678899999999999999999999999999984432210 00234578999999999
Q ss_pred cccchhhhhhcceeeecccc------chHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 159 TKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
.|+|++|+..+++++++.+. ...+++++|.++..+|++++|+.+|++++.+...
T Consensus 120 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 120 FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999977432 2456789999999999999999999999987554
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=1.7e-08 Score=105.40 Aligned_cols=132 Identities=7% Similarity=-0.101 Sum_probs=119.6
Q ss_pred HHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
+...+...+..+|+...++...+.++...++ +.+++.++.++|..+|.+.. +|.+|+.|+.
T Consensus 49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~---------aW~hR~wlL~ 119 (331)
T 3dss_A 49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLLS 119 (331)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHh
Confidence 5566677777888888899988888877666 78999999999999999876 8999999999
Q ss_pred cccc--chhhhhhcceeeeccccchHHHHHhccchhhhhh-HHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 158 KTKQ--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 158 ~lg~--y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~-~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
.+++ |++++.+|+++|++||.|..+|+.|+.++..+|. ++++++++.+++.++|.|..+|..+..+...+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9984 8999999999999999999999999999999999 699999999999999999999999999888774
No 181
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=1.6e-08 Score=93.52 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=93.7
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc---cchhhhhhcceeeecc-c-cchHHHHHhcc
Q 007725 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD-A-KNVKALYRRGQ 188 (591)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg---~y~eAi~~~~~AL~ld-P-~~~~a~~~rg~ 188 (591)
........+.+.|.+.+...+.+.. +.+++|.|+.+.. +++++|..++.+++.+ | ++.+++|++|.
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~~~~~---------~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVSKS---------TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 79 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCcHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 3445567788889988886665544 7889999999988 7889999999999999 8 78999999999
Q ss_pred chhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 189 al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+|+++|+|++|+.+++++++++|+|..+......++.++.+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888754
No 182
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.46 E-value=3.3e-08 Score=108.24 Aligned_cols=169 Identities=6% Similarity=-0.107 Sum_probs=116.4
Q ss_pred hhhhhhhhhcC-CChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHH-HHHHHhcccccccccchhHHHHHHHhh
Q 007725 54 DLKCAAEQLTH-TPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAA-KMLKKQGNELYSEGRFSNALQKYLLAK 130 (591)
Q Consensus 54 ~~~~a~e~l~~-~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a-~~lk~~Gn~~~~~g~y~eAi~~Y~kAL 130 (591)
+...+++.... ..|+....+...+... ..++++.+...+++.+...+... ..+...|..+.+.|++++|+..|.+|+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455554443 4555444333321111 12345567777777777666653 578888888888899999999999998
Q ss_pred hccccccccccceeeeeeccccce-eeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 131 KNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 131 ~l~p~~~~~e~~~l~~~~~~Nla~-~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
+..|.... .|...+. +|...|++++|+..|+++|+++|+++.+|..++..+..+|++++|...|++++..
T Consensus 384 ~~~~~~~~---------~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 384 EDARTRHH---------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCTTCCTH---------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred hccCCchH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 87665432 2333332 2446889999999999999999999999999999999999999999999999988
Q ss_pred CCCCCh----HHHHHhHHHHHhhhcc
Q 007725 210 SPDDGT----IADVLRDAKEILMKED 231 (591)
Q Consensus 210 ~P~~~~----a~~~L~~a~~~l~~~~ 231 (591)
.|.+++ ++......+...++.+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 776654 6666555555555433
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.46 E-value=1.2e-08 Score=86.51 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=66.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
+++.+..+..+|..++..|+|++|+.+|+++++++|.++. +|+++|.||..+|+|++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------TYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4566788999999999999999999999999999998865 8999999999999999999999999999886
Q ss_pred ch
Q 007725 179 NV 180 (591)
Q Consensus 179 ~~ 180 (591)
+.
T Consensus 74 ~~ 75 (100)
T 3ma5_A 74 EG 75 (100)
T ss_dssp HS
T ss_pred CC
Confidence 53
No 184
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.45 E-value=7e-09 Score=113.61 Aligned_cols=139 Identities=6% Similarity=-0.128 Sum_probs=118.9
Q ss_pred HHHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725 87 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 87 ~a~~~~~~~l~-~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA 165 (591)
.+..-+++.+. ..++....+..++..+.+.|++++|+..|.+++.+.|.++. .+|++++.++.+.|++++|
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------HHHHHHHHHHHHhcCHHHH
Confidence 56677777776 67888999999999999999999999999999999877631 2789999999999999999
Q ss_pred hhhcceeeeccccchHHHHHhccc-hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725 166 IKVGSEVLAYDAKNVKALYRRGQA-YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 166 i~~~~~AL~ldP~~~~a~~~rg~a-l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a 233 (591)
+..|.+|++..|.+...+...+.. +...|++++|+..|+++++++|+++.++..+..++..+++...+
T Consensus 376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhH
Confidence 999999999999888888776655 34689999999999999999999999998888887666554433
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=8.5e-09 Score=113.27 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=101.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-------
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------- 175 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l------- 175 (591)
+..+.+.+..+..+|+|++|+..|+++|++....-. +.+......+.|+|.+|..+|+|++|+..|+++|++
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 344455566677899999999999999986543211 112235668999999999999999999999999986
Q ss_pred -cccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCCh---HHHHHhHHHHHhhhccCCC
Q 007725 176 -DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGT---IADVLRDAKEILMKEDGHH 234 (591)
Q Consensus 176 -dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-----~P~~~~---a~~~L~~a~~~l~~~~~a~ 234 (591)
.|+-+..++++|.+|..+|+|++|+..|++|+++ -|+++. +...|..++..++.++++.
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999986 466654 4456666666666655443
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=1.3e-08 Score=87.24 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=89.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~ 163 (591)
+++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++.. ......+|+++|.+|...|+|+
T Consensus 19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--YRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--HHHHHHHHHHHHHHHHHhccHH
Confidence 45556666677767777778899999999999999999999999999998865210 0011337899999999999999
Q ss_pred hhhhhcceeeeccccchHHHHHhccchhhhhhH
Q 007725 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 196 (591)
Q Consensus 164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ 196 (591)
+|+..|+++++++| +...+..++.++..+++.
T Consensus 97 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 97 DAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999 688888888877766553
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.31 E-value=1.3e-08 Score=105.34 Aligned_cols=128 Identities=12% Similarity=0.017 Sum_probs=99.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc------
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 176 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld------ 176 (591)
+..+..+|..++..|+|++|+..|.+++.+.+..... .....++.++|.+|...|+|++|+..|++++++.
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 4567888999999999999999999999987664320 1123356789999999999999999999999876
Q ss_pred --ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-----hHHHHHhHHHHHhhhccCC
Q 007725 177 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-----TIADVLRDAKEILMKEDGH 233 (591)
Q Consensus 177 --P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~-----~a~~~L~~a~~~l~~~~~a 233 (591)
|....+++++|.+|...|++++|+..|++++.+.+... .++..++.+....++..++
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44667888899999999999999999999998887532 3455666666666555443
No 188
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.22 E-value=1.2e-07 Score=102.45 Aligned_cols=110 Identities=13% Similarity=0.207 Sum_probs=87.3
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--------cccchH
Q 007725 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------DAKNVK 181 (591)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--------dP~~~~ 181 (591)
.......|+|++|+..|+++|++....- .+.+......+.|+|.+|..+|+|++|+..|+++|++ .|+-+.
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVF-EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCcc-ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 3334457899999999999998643221 1112225568899999999999999999999999986 567788
Q ss_pred HHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHHHH
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVL 220 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l-----~P~~~~a~~~L 220 (591)
.|+++|.+|..+|+|++|+..|++|+++ -|+++.+....
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 9999999999999999999999999986 46666555433
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=1.6e-07 Score=84.71 Aligned_cols=119 Identities=9% Similarity=-0.044 Sum_probs=93.5
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec----c
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----T 159 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~----l 159 (591)
+++.+...+.+..+.....+ . +|..+...+.+++|+.+|+++.+. .++. +++|+|.+|.. .
T Consensus 10 d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~---------a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGN---------GCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHHHHCSSSC
T ss_pred CHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHH---------HHHHHHHHHHcCCCCC
Confidence 44455555555544433323 3 899999989999999999999986 3333 78999999998 8
Q ss_pred ccchhhhhhcceeeeccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (591)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~ 221 (591)
+++++|+..|++|.+. .++.+++++|.+|.. .+++++|+.+|++|++.. ++.+...|+
T Consensus 75 ~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred ccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999999865 789999999999999 899999999999998873 445544443
No 190
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.18 E-value=9.8e-08 Score=103.07 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=93.6
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--------c
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------D 176 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--------d 176 (591)
.+...-..+..+|+|++|+..|+++|++....- .+.+......+.|++.+|..+|+|++|+..|.++|.+ .
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 344444556778999999999999998643221 1122235668899999999999999999999999976 4
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHH---HHhHHHHHh
Q 007725 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIAD---VLRDAKEIL 227 (591)
Q Consensus 177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-----~P~~~~a~~---~L~~a~~~l 227 (591)
|.-+..++++|.+|..+|+|++|+..|++|+++ -|+++.+.. .|+.++..+
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999986 466665544 455544433
No 191
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.16 E-value=2.3e-07 Score=78.57 Aligned_cols=68 Identities=13% Similarity=-0.022 Sum_probs=60.8
Q ss_pred eccccceeeecccc---chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 148 CSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 148 ~~~Nla~~y~~lg~---y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
++..+|.+++..++ ..+|...+++||++||+++.+++.+|.+++..|+|++|+.+|+++++.+|.++.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 56677777765544 799999999999999999999999999999999999999999999999999543
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.12 E-value=9.9e-07 Score=95.23 Aligned_cols=127 Identities=14% Similarity=0.069 Sum_probs=107.5
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhccccccc----ccchhHHHHHHHhhhccccccccccceeeeeecccccee-e
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-Y 156 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~-y 156 (591)
+.++..+...+.+.....+..+..+.++|..|... +++++|+.+|++++ |+++. +++++|.+ |
T Consensus 192 ~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---------a~~~Lg~~~~ 259 (452)
T 3e4b_A 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---------SWVSLAQLLY 259 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---------HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---------HHHHHHHHHH
Confidence 33667777778887777777788888899888665 79999999999998 67765 78999998 4
Q ss_pred --eccccchhhhhhcceeeeccccchHHHHHhccchhhhh-----hHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 157 --LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 157 --~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-----~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
...+++++|+..|++++ +++++.+++++|.+|. .| ++++|+.+|++|+ +.++.+...|+.+...
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGR--AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 57899999999999998 4569999999999998 56 9999999999998 8899999999987554
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=5.4e-07 Score=98.90 Aligned_cols=109 Identities=6% Similarity=-0.066 Sum_probs=91.5
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-- 175 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-- 175 (591)
.++..+..+.++|..|..+|+|++|+.+|.++|.+....- .+..+.....|+|+|.+|..+|+|++|+..|++|+++
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY-HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999998643211 1112225668999999999999999999999999986
Q ss_pred ------cccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 176 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 176 ------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
.|...+.+-.++.++.+++.|.+|...|+++.
T Consensus 425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778899999999999999999998774
No 194
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.02 E-value=3.6e-07 Score=78.38 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=64.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a 182 (591)
+.-++.+|..++..++|..|+..|.+|++..+.... ..+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------------------------------~~~~~~~i 48 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------------------------------STIDKVSV 48 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------------------------------CSSCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------------------------------CcccHHHH
Confidence 345789999999999999999999999987543311 02344566
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
+.++|.+|.++|++++|+..++++++++|++..+..++...+..+.
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~ 94 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA 94 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHH
Confidence 6677777777777777777777777777777666666665555443
No 195
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=6.3e-07 Score=82.85 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=83.5
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc---cchhHHHHHHHhhhcc-ccccccccceeeeeeccccceee
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCY 156 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g---~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~Nla~~y 156 (591)
.++++..+..+|...+.......+..+++|.++.+.. ++.++|..+++.++.. |... ..|++++|..|
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~--------rd~lY~LAv~~ 81 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ--------RDYVFYLAVGN 81 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH--------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch--------HHHHHHHHHHH
Confidence 4556666777777776666677889999999999977 7889999999999987 5221 22899999999
Q ss_pred eccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al 190 (591)
+++++|++|+++|+++|+++|+|..+..-+-.+-
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998876554443
No 196
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.98 E-value=6.7e-07 Score=76.67 Aligned_cols=48 Identities=15% Similarity=-0.071 Sum_probs=23.3
Q ss_pred HhccchhhhhhHHHHhhhcccccccC-------CCCChHHHHHhHHHHHhhhccC
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVS-------PDDGTIADVLRDAKEILMKEDG 232 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~-------P~~~~a~~~L~~a~~~l~~~~~ 232 (591)
.+|..++..++|..|+.+|++|++.. +....++..|+.+..++++...
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~ 64 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHH
Confidence 44555555555555555555555432 1223455555555555554443
No 197
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.96 E-value=2.1e-06 Score=92.60 Aligned_cols=107 Identities=8% Similarity=0.001 Sum_probs=95.0
Q ss_pred HHHHhcccccccc---cchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc----ccchhhhhhcceeeeccc
Q 007725 105 MLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYDA 177 (591)
Q Consensus 105 ~lk~~Gn~~~~~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l----g~y~eAi~~~~~AL~ldP 177 (591)
++..+|..+...| ++.+|+..|+++++..+.... .++++|.+|... +++++|+..|++++ |
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~ 245 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---------RVDSVARVLGDATLGTPDEKTAQALLEKIA---P 245 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C
Confidence 7889999999999 999999999999998777643 458999999877 79999999999998 9
Q ss_pred cchHHHHHhccc-h--hhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725 178 KNVKALYRRGQA-Y--KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (591)
Q Consensus 178 ~~~~a~~~rg~a-l--~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~ 225 (591)
+++.+++++|.+ | ...+++++|+.+|+++++. .++.++..|+.+..
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 999999999999 5 5789999999999999854 57889999998866
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.1e-06 Score=92.19 Aligned_cols=134 Identities=8% Similarity=-0.001 Sum_probs=100.9
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec------cc
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DA 177 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l------dP 177 (591)
..+..+|..+...|++++|+.+|.+++...+.... ..+...++.++|.+|...|+|.+|+..+.+++.. .+
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 44566788888999999999999999987654432 2234557889999999999999999999998765 45
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~ 240 (591)
..+.+|..++.+|..+|+|++|...|++++.+.+.........+.+...++........+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 668899999999999999999999999999886654433444444445555444433343333
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.91 E-value=6.1e-07 Score=97.08 Aligned_cols=110 Identities=11% Similarity=-0.012 Sum_probs=78.1
Q ss_pred HHHHHHHhccccccc-----ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc---cchhhhhhcceee
Q 007725 102 AAKMLKKQGNELYSE-----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVL 173 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~-----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg---~y~eAi~~~~~AL 173 (591)
.+.++..+|..+... +++++|+..|.++++..+.. +++++|.+|...| ++++|+..|++++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~-----------a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT-----------AQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 345566666666665 77777777777777653221 5677777777655 7788888888887
Q ss_pred eccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 174 AYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 174 ~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
+. +++.+++++|.+|.. .+++++|+.+|++|++. .++.++..|+.+...
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 65 677788888888877 77888888888888765 356677777777655
No 200
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.91 E-value=3.7e-06 Score=100.82 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=87.5
Q ss_pred Hhhhhcccc--cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725 90 ARIDAQMNY--EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (591)
Q Consensus 90 ~~~~~~l~~--~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~ 167 (591)
..++++.++ ..+....|.++|..+...|+|++|+..|.+| +++. .|.+++.|+.++|+|++|++
T Consensus 1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s---------ay~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS---------SYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH---------HHHHHHHHHHHcCCHHHHHH
Confidence 444444443 3566788999999999999999999999887 3433 57888888889999999988
Q ss_pred hcceeeecccc---------------------------chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007725 168 VGSEVLAYDAK---------------------------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (591)
Q Consensus 168 ~~~~AL~ldP~---------------------------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L 220 (591)
+|..|++.+++ +...|++.|..+...|+|++|+..|.+| ..|..+
T Consensus 1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rL 1227 (1630)
T 1xi4_A 1156 YLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL 1227 (1630)
T ss_pred HHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHH
Confidence 88776654422 2335667788888888888888888876 256666
Q ss_pred hHHHHHhhhccCC
Q 007725 221 RDAKEILMKEDGH 233 (591)
Q Consensus 221 ~~a~~~l~~~~~a 233 (591)
+.+..++++++.+
T Consensus 1228 A~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAA 1240 (1630)
T ss_pred HHHHHHhCCHHHH
Confidence 6666666554443
No 201
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.89 E-value=1.9e-07 Score=96.55 Aligned_cols=133 Identities=9% Similarity=-0.021 Sum_probs=103.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 179 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--- 179 (591)
+..+...|..++..|++++|+..|.+++...|.... .....++.++|.+|...|+|++|+..+++++.+.|..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 456677888899999999999999999998765421 1123367889999999999999999999999987654
Q ss_pred ---hHHHHHhccchhhhhhHHHHhhhcccccccCC--------CCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 180 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--------DDGTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 180 ---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P--------~~~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
..+++++|.++...|++++|+..|++++.+.+ ....++..++.+....++..++...+..
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34578999999999999999999999998753 2234566677777777665554444433
No 202
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.83 E-value=1.1e-06 Score=95.17 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=42.6
Q ss_pred HHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec----cccchhhhhhcceeee
Q 007725 103 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLA 174 (591)
Q Consensus 103 a~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~----lg~y~eAi~~~~~AL~ 174 (591)
+.++..+|..+.. .+++++|+..|+++++.. ++. +++++|.+|.. .+++++|++.|+++++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~---------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDS---------GQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3344444444444 444555555555444431 111 34445544444 4445555555554443
Q ss_pred ccccchHHHHHhccchhh----hhhHHHHhhhcccccc
Q 007725 175 YDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHE 208 (591)
Q Consensus 175 ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~ 208 (591)
. .++.+++++|.+|.. .+++++|+.+|+++++
T Consensus 180 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 180 Q--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 2 344455555554444 4445555555554443
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.73 E-value=8.6e-06 Score=82.85 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=79.4
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-----ccchhhhhhcceeeeccccc-hHHHHHhccc
Q 007725 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----KQYDECIKVGSEVLAYDAKN-VKALYRRGQA 189 (591)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-----g~y~eAi~~~~~AL~ldP~~-~~a~~~rg~a 189 (591)
.+....|...++++|+++|.... ..+|.-+|..|.+. |+.++|.++|++||+++|+. ...++..|..
T Consensus 176 l~~l~~A~a~lerAleLDP~~~~-------GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~ 248 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLWPSYQE-------GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHH-------HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCccc-------CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 34457899999999999998432 23788899999884 99999999999999999975 9999999999
Q ss_pred hhh-hhhHHHHhhhcccccccCCCC
Q 007725 190 YKD-IGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 190 l~~-lg~~eeAl~~lekAl~l~P~~ 213 (591)
|+. .|++++|...+++|+..+|..
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 988 499999999999999998874
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.70 E-value=4.7e-05 Score=91.43 Aligned_cols=62 Identities=19% Similarity=0.092 Sum_probs=56.3
Q ss_pred eeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 146 ~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
..+|+++|.++...|+|++|+..|.+| +++.+|++.+.++.++|+|++|+++|..|.+..++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 347999999999999999999999876 88999999999999999999999999999888744
No 205
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.69 E-value=6.7e-06 Score=73.49 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=82.5
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh---hhhhcceeeecc-c-cchHHHHHhccchhhhh
Q 007725 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE---CIKVGSEVLAYD-A-KNVKALYRRGQAYKDIG 194 (591)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e---Ai~~~~~AL~ld-P-~~~~a~~~rg~al~~lg 194 (591)
..+.+.|.+.+...+..+. +.+|+|.|+.+.....+ +|..++..++.+ | ...+++|.+|.+++++|
T Consensus 18 ~~~~~~y~~e~~~~~~s~~---------~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKS---------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHH---------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCcHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 4455667766664443322 56788888888776655 999999998887 6 78899999999999999
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+|++|+.+++..|+++|+|..+......++.++.+
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988887754
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.69 E-value=1.5e-05 Score=83.78 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=94.5
Q ss_pred hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-------chhHHH-HHH--Hhhhccccccccccceeee
Q 007725 77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-------FSNALQ-KYL--LAKKNLQGIHSSEGRTLLL 146 (591)
Q Consensus 77 ~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~-------y~eAi~-~Y~--kAL~l~p~~~~~e~~~l~~ 146 (591)
+....++.+..+...++++++..|+.+.++-.++.+++-... ...++. .+. .++...|.++.
T Consensus 207 l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~-------- 278 (372)
T 3ly7_A 207 LLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI-------- 278 (372)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH--------
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH--------
Confidence 344467778888888899988888877777766665532111 112221 222 22344444433
Q ss_pred eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (591)
Q Consensus 147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~ 214 (591)
+|.-++.++...|++++|+..+++||.++|+ +-+|..+|.++...|++++|++.|++|+.++|..+
T Consensus 279 -~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 279 -IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 5666777777789999999999999999975 67889999999999999999999999999999864
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.68 E-value=8.6e-06 Score=84.00 Aligned_cols=162 Identities=8% Similarity=-0.064 Sum_probs=108.3
Q ss_pred ccCCCchhhhhhhhhcCCCh--hHHHHHHHHh-hcCChHHHHHHHHhhhhcccccc------hHHHHHHHhcccccccc-
Q 007725 48 KNMRPEDLKCAAEQLTHTPP--EEVAEIGEKL-ANASPEEIATMRARIDAQMNYEF------NAAKMLKKQGNELYSEG- 117 (591)
Q Consensus 48 ~~~~pe~~~~a~e~l~~~~p--ee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~------~~a~~lk~~Gn~~~~~g- 117 (591)
...+.++..+..++.....| ..++.....+ ....-+..+.|.+.+++..+..+ +.+......+.+.+..|
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 34556666665555533332 3333322221 01112234456666655555555 34445555564455555
Q ss_pred -cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec----------cccchHHHHHh
Q 007725 118 -RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----------DAKNVKALYRR 186 (591)
Q Consensus 118 -~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l----------dP~~~~a~~~r 186 (591)
+|.+|...|++++...|+... ...++| |+.++|+|++|...++.++++ +|+++.++.|+
T Consensus 192 ~~~q~A~~~f~El~~~~p~~~~-------~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTFPTWKT-------QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp STTTHHHHHHHHHHTTSCSHHH-------HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCccc-------HHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 999999999999887765110 114555 899999999999999988887 58899999999
Q ss_pred ccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725 187 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (591)
Q Consensus 187 g~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~ 221 (591)
..+...+|+ +|.++++++.+++|+++-+.....
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 999988997 899999999999999987655443
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=3.1e-06 Score=76.18 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=82.4
Q ss_pred ccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh--
Q 007725 115 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD-- 192 (591)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~-- 192 (591)
-.+++++|+.+|+++.+.. ++. +. +|.+|...+.+++|++.|+++.+. .++.+++++|.+|..
T Consensus 7 ~~~d~~~A~~~~~~aa~~g--~~~---------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN--EMF---------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CTT---------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHcCC--CHh---------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 3568999999999999875 322 33 999999999999999999999866 899999999999998
Q ss_pred --hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 193 --IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 193 --lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
.+++++|+.+|++|.+. .++.+...|+.+...
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 89999999999999876 678888888888765
No 209
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.64 E-value=1e-05 Score=87.24 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=73.0
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch---
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--- 180 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~--- 180 (591)
..+...|+.++..|+|++|+.+|.++ . .|.+++.||.++|+|++|++.|.++. +|...
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~----------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v 183 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-------S----------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEV 183 (449)
T ss_dssp --------------CTTTHHHHHHHT-------T----------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-------h----------hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHH
Confidence 48999999999999999999999977 1 37889999999999999999999994 33211
Q ss_pred -HHHHHh-----------------------ccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 181 -KALYRR-----------------------GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 181 -~a~~~r-----------------------g~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
.++... ...|.+.|+|++|+..|++++.+++.+..++..|+.+..+.
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 222223 36788899999999999999999999988888887775543
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=1.1e-06 Score=92.07 Aligned_cols=134 Identities=5% Similarity=-0.071 Sum_probs=103.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-----
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----- 177 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP----- 177 (591)
..++.++|..|+..|+|++|+++|.+++.+.+..... .....++.+++.++...+++++|+..|++++.+.+
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 4568899999999999999999999999987665321 11123466788999999999999999999987644
Q ss_pred -cchHHHHHhccchhhhhhHHHHhhhcccccccCCC------CChHHHHHhHHHHHhhhccCCCCCccc
Q 007725 178 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------DGTIADVLRDAKEILMKEDGHHGPRGL 239 (591)
Q Consensus 178 -~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~------~~~a~~~L~~a~~~l~~~~~a~~~~~~ 239 (591)
..+..++++|.+|...|+|++|+..+++++..... ..+++..++.+...++++..+...+..
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45789999999999999999999999998765322 235677777777777766655444443
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.44 E-value=9.2e-06 Score=68.60 Aligned_cols=71 Identities=13% Similarity=-0.032 Sum_probs=61.8
Q ss_pred chHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725 100 FNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld 176 (591)
++.+..+..+|..++..++ ..+|..+|.++|.++|.++. +++.+|..+++.|+|++|+..|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------ALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567788888888865554 79999999999999999976 78889999999999999999999999999
Q ss_pred ccc
Q 007725 177 AKN 179 (591)
Q Consensus 177 P~~ 179 (591)
|..
T Consensus 74 p~~ 76 (93)
T 3bee_A 74 DPN 76 (93)
T ss_dssp CTT
T ss_pred CCC
Confidence 873
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.29 E-value=3.4e-05 Score=79.48 Aligned_cols=134 Identities=8% Similarity=-0.098 Sum_probs=104.6
Q ss_pred HHHHHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhcccc-----ccccccceeeeeecccccee
Q 007725 83 EEIATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-----IHSSEGRTLLLACSLNSMSC 155 (591)
Q Consensus 83 ~e~~~a~~~~~~~l~~~~--~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~-----~~~~e~~~l~~~~~~Nla~~ 155 (591)
++++.|...+++.+...+ ...+.+...+.++.+.|+++.|.+.+++..+..|+ +. +.++++.+
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~----------~l~~Laea 183 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE----------MILNLAES 183 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH----------HHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH----------HHHHHHHH
Confidence 456667777777666554 77888888899999999999999999999888772 32 34556544
Q ss_pred --eeccc--cchhhhhhcceeeecccc--chHHHHHhccchhhhhhHHHHhhhccccccc----------CCCCChHHHH
Q 007725 156 --YLKTK--QYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV----------SPDDGTIADV 219 (591)
Q Consensus 156 --y~~lg--~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l----------~P~~~~a~~~ 219 (591)
++..| +|.+|...|++++...|+ ....+++ ++..+|+|++|..++++.+++ +|+++++..+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 44445 999999999999888887 4556666 899999999999999988877 5888888877
Q ss_pred HhHHHHHhhh
Q 007725 220 LRDAKEILMK 229 (591)
Q Consensus 220 L~~a~~~l~~ 229 (591)
+..+...+++
T Consensus 261 ~i~l~~~lgk 270 (310)
T 3mv2_B 261 QITLALMQGL 270 (310)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCh
Confidence 7766666653
No 213
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.21 E-value=2.5e-05 Score=84.27 Aligned_cols=71 Identities=14% Similarity=0.001 Sum_probs=38.0
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
.|.++|.++...|+|++|+.+|+.+ ..|.+++.||.++|+|++|++.+++| +++.+|..+..+...+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 5667777777777777777777655 45667777777777777777777777 3455666666655555
Q ss_pred hhcc
Q 007725 228 MKED 231 (591)
Q Consensus 228 ~~~~ 231 (591)
++.+
T Consensus 191 ~ef~ 194 (449)
T 1b89_A 191 KEFR 194 (449)
T ss_dssp TCHH
T ss_pred CcHH
Confidence 5433
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=3.8e-05 Score=82.79 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=72.9
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-- 175 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-- 175 (591)
.++..+..+.++|..|..+|+|++|+.+|.++|.+....- .+..+.....|+|+|.+|..+|+|++|+..|++|+++
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF-PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4777889999999999999999999999999998642211 0112235668999999999999999999999999986
Q ss_pred ------cccchHHHHHhccchhhh
Q 007725 176 ------DAKNVKALYRRGQAYKDI 193 (591)
Q Consensus 176 ------dP~~~~a~~~rg~al~~l 193 (591)
.|...+.+.+++.++.++
T Consensus 403 ~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 403 VTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHH
Confidence 244445555566655443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=5.4e-05 Score=81.68 Aligned_cols=77 Identities=10% Similarity=-0.083 Sum_probs=64.0
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (591)
Q Consensus 98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l 175 (591)
.++..+..+.++|..|..+|+|++|+.+|+++|.+....- .+..+.....|+|+|.+|..+|+|++|+..|++|+++
T Consensus 335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY-PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999998643211 0112225668999999999999999999999999986
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.98 E-value=0.00026 Score=74.48 Aligned_cols=172 Identities=9% Similarity=0.040 Sum_probs=108.6
Q ss_pred CcchHHHHHHHHhhChh---HHHHhhhhhccCCCchhhhhh---hhhcCCChhHHHHHHHHhhc---------CChHHHH
Q 007725 22 SPDDFARIQQQMMANPE---LMRIATENMKNMRPEDLKCAA---EQLTHTPPEEVAEIGEKLAN---------ASPEEIA 86 (591)
Q Consensus 22 ~p~~l~r~~~~~~~~p~---l~r~A~e~m~~~~pe~~~~a~---e~l~~~~pee~~a~~~k~~~---------~~~~e~~ 86 (591)
+..+..++....-.|++ +.-++...+...++++..++. ++....+|+...+....... .......
T Consensus 179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 33344444443444554 333455556666776665543 44445667654444332111 1111222
Q ss_pred HHHHhhh--hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725 87 TMRARID--AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (591)
Q Consensus 87 ~a~~~~~--~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e 164 (591)
.+...+. ..+...+..+..+..++..++..|++++|+..+.+|+.++|.. ..|.-+|.++.-.|++++
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~----------~a~~llG~~~~~~G~~~e 328 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW----------LNYVLLGKVYEMKGMNRE 328 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHCCCHHH
Confidence 2221111 2334557777888888888888999999999999999997542 256788999999999999
Q ss_pred hhhhcceeeeccccchHHHHHhccchh-hhhhHHHHhhhc
Q 007725 165 CIKVGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDL 203 (591)
Q Consensus 165 Ai~~~~~AL~ldP~~~~a~~~rg~al~-~lg~~eeAl~~l 203 (591)
|++.|.+|+.++|.....++....++. .+...+-++..|
T Consensus 329 A~e~~~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~ 368 (372)
T 3ly7_A 329 AADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF 368 (372)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHH
T ss_pred HHHHHHHHHhcCCCcChHHHHhCceeecchhhhHHHHHhc
Confidence 999999999999998776666665543 555555444433
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.94 E-value=0.00011 Score=65.66 Aligned_cols=99 Identities=8% Similarity=-0.032 Sum_probs=78.7
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh---HHHHHHHhhhcc-ccccccccceeeeeeccccceeee
Q 007725 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN---ALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e---Ai~~Y~kAL~l~-p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
++++..+..+|...+.......+..++++..+.+..+..+ +|..++..+... |.. ..-|++.+|..|+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~--------~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--------QRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHH
Confidence 4566677777777766556677888999999988776665 999999988865 322 1238899999999
Q ss_pred ccccchhhhhhcceeeeccccchHHHHHhcc
Q 007725 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~ 188 (591)
++|+|.+|+++|+..|+++|+|..+..-+..
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999888755443
No 218
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.79 E-value=0.00027 Score=63.43 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=69.5
Q ss_pred eccccceeeeccc---cchhhhhhcceeeeccc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 148 ~~~Nla~~y~~lg---~y~eAi~~~~~AL~ldP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
+.+|.|.|+.+.. +..++|..++..++.+| ...+++|.+|.+++++|+|++|+.+++.+|+++|+|..+......+
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4455555555544 45678999999988888 5688999999999999999999999999999999999999999998
Q ss_pred HHHhhh
Q 007725 224 KEILMK 229 (591)
Q Consensus 224 ~~~l~~ 229 (591)
+.++.+
T Consensus 122 e~ki~k 127 (134)
T 3o48_A 122 EDKIQK 127 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888754
No 219
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.46 E-value=0.00063 Score=61.78 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=69.6
Q ss_pred eccccceeeeccc---cchhhhhhcceeeeccc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725 148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (591)
Q Consensus 148 ~~~Nla~~y~~lg---~y~eAi~~~~~AL~ldP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a 223 (591)
+.+|++.|+.+.. +..++|..++..++.+| ...+++|.+|.+++++|+|++|+.+++..|+++|+|..+......+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4556666666554 44578889998888888 5788999999999999999999999999999999999999999988
Q ss_pred HHHhhh
Q 007725 224 KEILMK 229 (591)
Q Consensus 224 ~~~l~~ 229 (591)
+.++.+
T Consensus 121 e~~i~k 126 (144)
T 1y8m_A 121 EDKIQK 126 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.35 E-value=0.00021 Score=66.59 Aligned_cols=102 Identities=11% Similarity=0.085 Sum_probs=79.2
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-------
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA------- 177 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP------- 177 (591)
.++.....++..+.|+.|+-.+..++.+...+++.-.-.....+++.+|.+++..++|..|...|++||.+.-
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566677788999999999999998887655543111122333678899999999999999999999875421
Q ss_pred ------------------cchHHHHHhccchhhhhhHHHHhhhcccc
Q 007725 178 ------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (591)
Q Consensus 178 ------------------~~~~a~~~rg~al~~lg~~eeAl~~lekA 206 (591)
...+..|..+.||.+++++++|+..++..
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999999865
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.30 E-value=0.0008 Score=60.38 Aligned_cols=102 Identities=8% Similarity=-0.004 Sum_probs=74.7
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc---cchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
.++++....++|+..+ ...-.++..++.+..+.+.. +..++|..+...+...|... .-|++.+|..|+
T Consensus 19 ~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~--------Rd~LYyLAvg~y 89 (134)
T 3o48_A 19 YPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY 89 (134)
T ss_dssp CHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh--------HHHHHHHHHHHH
Confidence 3445555666666654 22334567777777776554 44679999999888766432 238999999999
Q ss_pred ccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~ 191 (591)
++|+|.+|.++++..|+++|+|..+..-+..+--
T Consensus 90 klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ 123 (134)
T 3o48_A 90 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED 123 (134)
T ss_dssp HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999988765554443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.99 E-value=0.0015 Score=66.43 Aligned_cols=115 Identities=7% Similarity=-0.014 Sum_probs=93.3
Q ss_pred hhhhhhhcCCChhHHHHHHHHh------hcC------ChHHHHHHHHhhhhcccccch--HHHHHHHhccccccc-----
Q 007725 56 KCAAEQLTHTPPEEVAEIGEKL------ANA------SPEEIATMRARIDAQMNYEFN--AAKMLKKQGNELYSE----- 116 (591)
Q Consensus 56 ~~a~e~l~~~~pee~~a~~~k~------~~~------~~~e~~~a~~~~~~~l~~~~~--~a~~lk~~Gn~~~~~----- 116 (591)
....+.+.+..|++++.+.|.. ... ....+..++..+++++...++ ...++..+|..|...
T Consensus 138 ~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g 217 (301)
T 3u64_A 138 QRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG 217 (301)
T ss_dssp HHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred hhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC
Confidence 3456778888999999999972 111 123455777888888888888 566999999999885
Q ss_pred ccchhHHHHHHHhhhccccc-cccccceeeeeeccccceeeec-cccchhhhhhcceeeeccccc
Q 007725 117 GRFSNALQKYLLAKKNLQGI-HSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKN 179 (591)
Q Consensus 117 g~y~eAi~~Y~kAL~l~p~~-~~~e~~~l~~~~~~Nla~~y~~-lg~y~eAi~~~~~AL~ldP~~ 179 (591)
|+.++|.++|++||+++|+. .. .++..|..|.. .++++++.+.+++||.++|..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id---------~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPD---------HHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSH---------HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCch---------HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999964 44 67788888877 599999999999999998874
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.96 E-value=0.0016 Score=59.14 Aligned_cols=99 Identities=8% Similarity=0.018 Sum_probs=72.5
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (591)
Q Consensus 81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~ 157 (591)
.++++..+..+|..... ..-..+..++.+..+.+..+ -.++|..++..+...|... .-|++.+|..|+
T Consensus 18 ~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~--------RdcLYyLAvg~y 88 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY 88 (144)
T ss_dssp CHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH--------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch--------hHHHHHHHHHHH
Confidence 34445555556655522 23456677888887776554 4679999999888666432 238899999999
Q ss_pred ccccchhhhhhcceeeeccccchHHHHHhcc
Q 007725 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188 (591)
Q Consensus 158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~ 188 (591)
++|+|.+|.++++..|+++|+|..+..-+..
T Consensus 89 kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 89 KLGEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp TTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999999999999999887654433
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.07 E-value=0.0019 Score=59.12 Aligned_cols=119 Identities=13% Similarity=-0.080 Sum_probs=89.1
Q ss_pred HHHHhcccccccccc------hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 105 MLKKQGNELYSEGRF------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
.|...-..+-+.|+. ++-++.|++|+...|... .-.-...+.+|++.+.. ...++.++|.+.|..++.+...
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH
Confidence 344333333344555 778899999999988764 22333455567777754 5779999999999999999888
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~ 228 (591)
.++.|...|.-..+.|+...|...+.+|+.+.|... ..|..+...+.
T Consensus 93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~---~~le~a~~nl~ 139 (161)
T 4h7y_A 93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL---EMLEIALRNLN 139 (161)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH---HHHHHHHHhhh
Confidence 999999999999999999999999999999998754 34444544443
No 225
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.00 E-value=0.004 Score=70.79 Aligned_cols=130 Identities=8% Similarity=-0.096 Sum_probs=103.2
Q ss_pred HHhhhhcccccchHHHHHHHhcccccccccchhHH-HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725 89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL-QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (591)
Q Consensus 89 ~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi-~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~ 167 (591)
..-|++.+...+...+.|...+..+...|+.++|+ ..|.+|+..+|.... +|+..+.++.+.|++++|..
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~---------Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV---------LAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCCHHHHHH
Confidence 34566777778888889999999999999999997 999999999887643 68888999999999999999
Q ss_pred hcceeeecc-----------c-----------cchHHHHHhccchhhhhhHHHHhhhccccccc-CCCCChHHHHHhHHH
Q 007725 168 VGSEVLAYD-----------A-----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDDGTIADVLRDAK 224 (591)
Q Consensus 168 ~~~~AL~ld-----------P-----------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-~P~~~~a~~~L~~a~ 224 (591)
.|+++|..- | .....|...+....+.+..+.|...|.+|++. .+....++.....++
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999752 4 24567888888888899999999999999987 333445555444444
Q ss_pred HHh
Q 007725 225 EIL 227 (591)
Q Consensus 225 ~~l 227 (591)
..+
T Consensus 480 ~~~ 482 (679)
T 4e6h_A 480 YHI 482 (679)
T ss_dssp HTT
T ss_pred HHh
Confidence 443
No 226
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.38 E-value=0.013 Score=66.57 Aligned_cols=118 Identities=8% Similarity=-0.083 Sum_probs=89.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccccchH
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVK 181 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP~~~~ 181 (591)
...|....+...+.|..+.|...|.+|++..|... ..+|...+....+.+ +++.|...|+++|+..|+++.
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 44667777777788889999999999998733221 114555555554554 589999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHhHHHHHhh
Q 007725 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEILM 228 (591)
Q Consensus 182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~---~~~a~~~L~~a~~~l~ 228 (591)
.+...+..+...|+.+.|...|++|+...|+ ...++..+...+...|
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 9888888888899999999999999999884 3455666555555544
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.35 E-value=0.007 Score=64.04 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=72.4
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccc-------------cceeeeeeccccceeeeccccchhhhhhcc
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------------GRTLLLACSLNSMSCYLKTKQYDECIKVGS 170 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------------~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~ 170 (591)
+.+...|......|+...|+..|.+|+.+-....... ..+.+..+...++.+++..|+|.+++..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555556778888888888888754432110 112223344456677778888888888888
Q ss_pred eeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 171 ~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
+++..+|-+-.+|..+-.+|...|+..+|+..|+++-
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888887763
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.64 E-value=0.021 Score=53.09 Aligned_cols=88 Identities=17% Similarity=0.299 Sum_probs=61.3
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc----------c----ee--eeeeccccceeeeccccchhh
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG----------R----TL--LLACSLNSMSCYLKTKQYDEC 165 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~----------~----~l--~~~~~~Nla~~y~~lg~y~eA 165 (591)
.++.+..+|+.+|.+++|..|+..|++||.+....+.... . .+ -.-+.+.++.||.+++++++|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 4567888999999999999999999999886553321100 0 00 012567899999999999999
Q ss_pred hhhcceeeeccccchHHHHHhccch
Q 007725 166 IKVGSEVLAYDAKNVKALYRRGQAY 190 (591)
Q Consensus 166 i~~~~~AL~ldP~~~~a~~~rg~al 190 (591)
|..++.. -..-..++....+|..|
T Consensus 142 i~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHhcC-CchhcCHHHHHHHHHHh
Confidence 9987653 22335666666666554
No 229
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.22 E-value=0.056 Score=59.07 Aligned_cols=80 Identities=9% Similarity=-0.080 Sum_probs=72.3
Q ss_pred eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (591)
Q Consensus 148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l 227 (591)
|+.++|.+.+....+..|..+|.+|+.++|++...|+.+|......|++-+|+-+|-+++.....++.+..+|..+..+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 56677777777788899999999999999999999999999999999999999999999999888999999998877655
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=87.92 E-value=0.057 Score=58.77 Aligned_cols=129 Identities=10% Similarity=-0.027 Sum_probs=77.7
Q ss_pred HHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------cccee----------------
Q 007725 89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTL---------------- 144 (591)
Q Consensus 89 ~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l---------------- 144 (591)
..-|++.+...+.....|...+..+...|+.++|...|.+|+.. |.+... +..++
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchh
Confidence 34555555556666888888998899999999999999999999 775420 00000
Q ss_pred -------eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChH
Q 007725 145 -------LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTI 216 (591)
Q Consensus 145 -------~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-~~eeAl~~lekAl~l~P~~~~a 216 (591)
...+|...+..+.+.+.++.|...|.+| ...+.....|...+......+ +++.|...|+.+++..|+.++.
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 0012222333333455566666777766 322223445544455444455 3777777777777766666554
Q ss_pred HHH
Q 007725 217 ADV 219 (591)
Q Consensus 217 ~~~ 219 (591)
+..
T Consensus 357 ~~~ 359 (493)
T 2uy1_A 357 KEE 359 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.57 E-value=0.094 Score=56.03 Aligned_cols=104 Identities=11% Similarity=-0.066 Sum_probs=79.1
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc---
Q 007725 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--- 176 (591)
Q Consensus 100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld--- 176 (591)
......+..+|..|++.|+|.+|+++|.++......... ...++.+.-.+++..++|..+...+.++..+-
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 334557788999999999999999999999887655432 34467777788888999999999998886542
Q ss_pred --cc-chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725 177 --AK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (591)
Q Consensus 177 --P~-~~~a~~~rg~al~~lg~~eeAl~~lekAl~l 209 (591)
|. ..+..+..|..+...++|.+|..+|-.++.-
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11 1345556788888899999999888776543
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.98 E-value=0.19 Score=57.53 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=51.1
Q ss_pred cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 152 la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
-+..++..|+|+-|++...+|+.+-|...+.|+.++.||..+|+|+.|+-.+..+-
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35555678999999999999999999999999999999999999999999988774
No 233
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=77.23 E-value=2.2 Score=32.68 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.0
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 007725 484 MRNQMNDPAMKQMFSSMVK 502 (591)
Q Consensus 484 m~~~m~~p~m~~m~~~mmk 502 (591)
+.+.|+||.+++.+..+++
T Consensus 37 ~~~~~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 37 IMKYQNDKEVMDVFNKISQ 55 (62)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHH
Confidence 6678888888888887764
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.66 E-value=0.57 Score=46.85 Aligned_cols=65 Identities=17% Similarity=0.068 Sum_probs=58.8
Q ss_pred eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007725 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (591)
Q Consensus 156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L 220 (591)
+++.++..+|++.+...|+-+|.+++....+-+.|+-.|+|+.|+.-++.+.+++|........+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999976544333
No 235
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=74.47 E-value=4.8 Score=31.82 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=29.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCHHHHhhhhhhhccccChhhHHHHHHH
Q 007725 483 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQT 531 (591)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~~~~~~~~ 531 (591)
.+..+|+||.|+..+.+++.| |..+..... +|+-+.+.++.
T Consensus 21 Ei~~im~DP~~~~~lq~~~~N--P~~~~k~~~------nP~v~~~i~kl 61 (71)
T 2llw_A 21 EVAAIMQDPVMQSILQQAQQN--PAALQEHMK------NPEVFKKIQTL 61 (71)
T ss_dssp HHHHHHTCTHHHHHHHHHHHC--HHHHHHHHH------SHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHC--HHHHHHHHh------CHHHHHHHHHH
Confidence 677899999999999999998 877655432 45555555443
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=74.35 E-value=0.57 Score=53.63 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=52.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcce
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~ 171 (591)
...|..++..+..+|+|+-|+.+-++|+.+.|.+-. +|+.|+.||..+|+|+.|+-.+.-
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~---------tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE---------SWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH---------HHHHHHHHHHHhccHHHHHHHHhc
Confidence 446777888889999999999999999999998744 899999999999999999865443
No 237
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.24 E-value=1.2 Score=48.62 Aligned_cols=56 Identities=9% Similarity=-0.007 Sum_probs=41.4
Q ss_pred ccchhhhhhcceeeec-----cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725 160 KQYDECIKVGSEVLAY-----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (591)
Q Consensus 160 g~y~eAi~~~~~AL~l-----dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~ 215 (591)
+.|+.|..+..++.-. +...+.++|..|.++.-.++|.+|..+|..|+...|.+..
T Consensus 245 ~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 245 GEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp SCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred CcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 3455555555554311 1234788999999999999999999999999999887653
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=70.33 E-value=0.77 Score=50.05 Aligned_cols=80 Identities=13% Similarity=-0.113 Sum_probs=69.2
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~ 183 (591)
..+..+|.....+..+..|..+|.+|+.+.|.... .|+-+|.++...+++-+|+-+|.++|.....++.+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---------~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~ 223 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---------hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHH
Confidence 35667888887788899999999999999999865 789999999999999999999999998887788888
Q ss_pred HHhccchhh
Q 007725 184 YRRGQAYKD 192 (591)
Q Consensus 184 ~~rg~al~~ 192 (591)
-|+...+..
T Consensus 224 ~nL~~~f~~ 232 (497)
T 1ya0_A 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776653
No 239
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=70.24 E-value=1 Score=48.82 Aligned_cols=112 Identities=8% Similarity=-0.073 Sum_probs=79.8
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccccchHH
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKA 182 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP~~~~a 182 (591)
..+........+.+..+.|...|.+| . .|.. . ..+|...+...+..+ +++.|...|+.+++..|+.+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~-~-------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV-G-------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC-C-------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC-C-------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 44555566666677899999999999 3 2321 1 114444455555555 6999999999999988988888
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (591)
Q Consensus 183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~ 229 (591)
+...+.-+..+|+.+.|...|+++. ....++......+...|+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 7777777788899999999999983 345666666665555543
No 240
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=69.24 E-value=3.6 Score=32.54 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=24.8
Q ss_pred ChhhhchhHHHhhhcChHHHHHHH------HHHHhhhh
Q 007725 385 RPDMLKTASDVMSKMSSEDLQKMF------EMESTLKN 416 (591)
Q Consensus 385 ~P~m~~~a~~mm~nm~pe~~~~m~------~ma~~~~~ 416 (591)
||+|+.+++++++| |..+++.+ .+...|..
T Consensus 28 DP~~~~~lq~~~~N--P~~~~k~~~nP~v~~~i~kl~~ 63 (71)
T 2llw_A 28 DPVMQSILQQAQQN--PAALQEHMKNPEVFKKIQTLIA 63 (71)
T ss_dssp CTHHHHHHHHHHHC--HHHHHHHHHSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC--HHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999 99998866 55555543
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=68.36 E-value=0.49 Score=51.36 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=75.1
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH-
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY- 184 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~- 184 (591)
+...|..+|..|.|+.|.-+|... + -|..++.|+.++++|.+|++..++|-. +..++-.+
T Consensus 147 iq~VGDrcf~e~lYeAAKilys~i-------s----------N~akLAstLV~L~~yq~AVdaArKAns--~ktWKeV~~ 207 (624)
T 3lvg_A 147 IQQVGDRCYDEKMYDAAKLLYNNV-------S----------NFGRLASTLVHLGEYQAAVDGARKANS--TRTWKEVCF 207 (624)
T ss_dssp THHHHHHHHHSCCSTTSSTTGGGS-------C----------CCTTTSSSSSSCSGGGSSTTTTTTCCS--SCSHHHHTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC-------c----------cHHHHHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHH
Confidence 455688889999999888777632 1 377899999999999999999999853 22222111
Q ss_pred --------------------------HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725 185 --------------------------RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (591)
Q Consensus 185 --------------------------~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~ 226 (591)
-+-.-|...|.|+|-+..++.++.++..+--+..+|+.+..+
T Consensus 208 ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 133445667888999999999998888887777777776444
No 242
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=63.77 E-value=1.6 Score=47.41 Aligned_cols=108 Identities=8% Similarity=0.032 Sum_probs=78.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--ccc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--DAK 178 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--dP~ 178 (591)
...+..+-..|.+.|++++|++.|.+.... .|+ ...|..+-.+|.+.|++++|.+.+++-.+. .|
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P- 173 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP- 173 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Confidence 445666677889999999999999987653 232 225667777888999999999999887654 33
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccc--cCCCCChHHHHHhH
Q 007725 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHE--VSPDDGTIADVLRD 222 (591)
Q Consensus 179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~--l~P~~~~a~~~L~~ 222 (591)
+...|..+-.+|.+.|++++|.+.|++--+ +.|+. ..+..|..
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~-~T~~~l~~ 218 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK-STFDMIEE 218 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH-HHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH-HHHHHHHH
Confidence 556777888899999999999999987543 44543 33344433
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.54 E-value=0.61 Score=49.32 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=75.9
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc------c-cch
Q 007725 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------A-KNV 180 (591)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld------P-~~~ 180 (591)
.+|..|+..|+|.+|+..|.+.+........ ...+.-+|.....+|..++++.++...|++|..+. | -.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 6788999999999999999999887655321 23345567788888999999999999998886542 2 134
Q ss_pred HHHHHhccchh-hhhhHHHHhhhccccc
Q 007725 181 KALYRRGQAYK-DIGRLEEAVSDLSNAH 207 (591)
Q Consensus 181 ~a~~~rg~al~-~lg~~eeAl~~lekAl 207 (591)
.....-|..+. ..++|..|..+|-.++
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 55666788888 8999999999988875
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=61.91 E-value=0.72 Score=43.08 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=71.4
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceee--ec-------
Q 007725 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL--AY------- 175 (591)
Q Consensus 105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL--~l------- 175 (591)
...-.+..++-.|.|..++-...+ ++. +...+..+.||.++++|..|+..++..| ++
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~---lNT-----------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHK---LNT-----------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHT---CCB-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred HHhhhhhhhhhcchHhHHHHHHHh---cch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 334456667777888777655442 111 1134557789999999999999988887 22
Q ss_pred --------cccchHHHH-HhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725 176 --------DAKNVKALY-RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (591)
Q Consensus 176 --------dP~~~~a~~-~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~ 219 (591)
||.+-+.++ .+|..+...|+.+||+.++......+|-.+.+...
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL 153 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence 344555444 46888889999999999999999988876655433
No 245
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=54.88 E-value=12 Score=28.56 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCHHHHhhhhhhhccccChhhHHHHHHHh
Q 007725 483 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTM 532 (591)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~~~~~~~~~ 532 (591)
.....|+||.++++++++++| |..+.. -+ -+++-+..++.-+
T Consensus 13 e~~~~m~dP~~~~~lq~i~~N--P~~~~~---~~---~dP~v~~~~~~L~ 54 (62)
T 2lnm_A 13 DVAMAFQNPRVQAALMECSEN--PMNIMK---YQ---NDKEVMDVFNKIS 54 (62)
T ss_dssp HHHHHTTSHHHHHHHHHHTTC--GGGHHH---HT---TCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHC--HHHHHH---HH---hChHHHHHHHHHH
Confidence 588999999999999999998 654432 22 2555555544433
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.64 E-value=1.1 Score=53.66 Aligned_cols=103 Identities=11% Similarity=0.015 Sum_probs=70.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccc--------------cccceeeeeeccccceeeeccccchhhhh
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS--------------SEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~--------------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~ 167 (591)
.+...+-+|.+++..|+|++|..+|.+|-.-...+.. ......+..+|+.+...+.+.+.|+.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344577899999999999999999998543221110 01122233456666667777888999999
Q ss_pred hcceeeeccccc-h----HHHHHhccchhhhhhHHHHhhhcc
Q 007725 168 VGSEVLAYDAKN-V----KALYRRGQAYKDIGRLEEAVSDLS 204 (591)
Q Consensus 168 ~~~~AL~ldP~~-~----~a~~~rg~al~~lg~~eeAl~~le 204 (591)
+...||+..+.+ . ..|.+.=..+..+++|++|...+-
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 998888754322 1 256777778888899998877764
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.51 E-value=8.6 Score=42.90 Aligned_cols=95 Identities=12% Similarity=-0.087 Sum_probs=66.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~ 183 (591)
.....++..++..+...++...+.+++.....+.. .-+.-+ .+ ++.+++..|...+.+.-.-.....+..
T Consensus 253 ~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~e~~~r-~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL--------IERRVR-MA-LGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH--------HHHHHH-HH-HHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH--------HHHHHH-HH-HHCCCHHHHHHHHHHccccccccHhHH
Confidence 34445666667777566777777776543222211 112222 23 467999999999987766545678899
Q ss_pred HHhccchhhhhhHHHHhhhcccccc
Q 007725 184 YRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 184 ~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
|.+|.++..+|+.++|...|+++..
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999875
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=47.99 E-value=3.3 Score=46.39 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.2
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhh
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKK 131 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~ 131 (591)
+....|+.+|..+.+.++++.|+++|.++-.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3456889999999999999999999998744
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=47.94 E-value=3.9 Score=42.75 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=58.5
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhh
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV 248 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e~~e~~ 248 (591)
....++..++.++..+|++++|+..+++++..+|-+..++..|-.+....++...+...|+..-....++-
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34456677888899999999999999999999999999999999999888888877777776655555444
No 250
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=47.78 E-value=4 Score=33.90 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=24.6
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
+.+..+-+++..+...|+|++||++.++|.
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 357788889999999999999988777665
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=44.48 E-value=5.2 Score=39.89 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=63.2
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec---cc
Q 007725 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TK 160 (591)
Q Consensus 84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~---lg 160 (591)
.+..+...+..+++.+|..+.....+-..++-.|+|+.|+....-+.+++|.... .+..|+. ..
T Consensus 12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-------------~a~~yr~lI~aE 78 (273)
T 1zbp_A 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-------------GASQLRHLVKAA 78 (273)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-------------HHHHHHHHHHHH
Confidence 3444555566666667777777777777777777777777777777777665432 1111111 11
Q ss_pred cchhhhhhccee--eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725 161 QYDECIKVGSEV--LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (591)
Q Consensus 161 ~y~eAi~~~~~A--L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~ 212 (591)
.+++.+-.-.+. +--.|.........++.....|+.++|.+.-.+|++..|.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 222222111111 1113334445555556666667777777777766666554
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=43.75 E-value=2.5 Score=39.56 Aligned_cols=86 Identities=14% Similarity=-0.027 Sum_probs=53.8
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~ 180 (591)
+....|+.+|......|++.-|+++|.++-.+ ..+...|.-.|+-+.-....+.+....-
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------------~~L~~Ly~~tg~~e~L~kla~iA~~~g~--- 91 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----------------DKLSFLYLVTGDVNKLSKMQNIAQTRED--- 91 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------HHHHHHHHHHTCHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------HHHHHHHHHhCCHHHHHHHHHHHHHCcc---
Confidence 34568999999999999999999999987553 1233444445554443333333221111
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccc
Q 007725 181 KALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (591)
Q Consensus 181 ~a~~~rg~al~~lg~~eeAl~~lekAl~ 208 (591)
+.....++..+|+++++++.|.+.-.
T Consensus 92 --~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 92 --FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 12233456677888888887766643
No 253
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=41.77 E-value=9.8 Score=30.76 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=25.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...|..+=+.|+|.+|+.+|..+|++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455667777788899999999999988885
No 254
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.47 E-value=11 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...|..+=+.|+|.+|+.+|..+|++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3555677778888999999999999999885
No 255
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=40.76 E-value=15 Score=28.81 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=26.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhc---------CCHHHHhhhhhhhcccc
Q 007725 483 QMRNQMNDPAMKQMFSSMVKN---------MSPEMMANMSEQFGIKL 520 (591)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~---------m~p~~~~~m~~~~g~~~ 520 (591)
..+..|+||++++++..+.+| -+|..+..|+.-+|+.+
T Consensus 24 ~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~~ 70 (71)
T 2llv_A 24 KTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVDL 70 (71)
T ss_dssp TTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 467899999999999888776 23455555555555443
No 256
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=38.83 E-value=13 Score=29.58 Aligned_cols=20 Identities=20% Similarity=0.694 Sum_probs=15.8
Q ss_pred ccccccccccCCCchHHHHH
Q 007725 556 GVKKTKNWLLGKPGMILAIC 575 (591)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~ 575 (591)
...|+-+|+++||+..+.++
T Consensus 28 ~l~kvE~WilrNp~~al~a~ 47 (75)
T 1p58_D 28 HAQRIETWILRHPGFTIMAA 47 (75)
T ss_pred HHHHHHHHHHHChHHHHHHH
Confidence 44458999999998877776
No 257
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=37.59 E-value=14 Score=30.73 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=25.2
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+-.+-.++..+.+.|+|++||+++.+|..+
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445666778889999999999999998875
No 258
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.39 E-value=15 Score=29.97 Aligned_cols=30 Identities=33% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
+..+...+..+-..|+|++|+.+|..+|++
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566677778889999999999988875
No 259
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=35.20 E-value=13 Score=32.20 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=22.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...+...=..|+|.+|+.+|..++++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566666667778888888888888774
No 260
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=33.83 E-value=16 Score=29.51 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...+...=..|+|++|+.+|..++++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445666666777789999999999988885
No 261
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=32.92 E-value=17 Score=30.04 Aligned_cols=31 Identities=32% Similarity=0.302 Sum_probs=24.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007725 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (591)
Q Consensus 102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (591)
.+..+...|..+=..|+|.+|+.+|..+|++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555667777778888999999999888875
No 262
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=31.87 E-value=8.1 Score=41.75 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=68.3
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--cccchHHHHHhccch
Q 007725 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--DAKNVKALYRRGQAY 190 (591)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--dP~~~~a~~~rg~al 190 (591)
..+.+.+++|.+.|.+-+... ..|+ ...|..+-.+|.+.|++++|++.+++..+. .| +...|..+-.+|
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G-~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~ 150 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDK-VVPN-------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGF 150 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTT-CCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHH
Confidence 345677889999998866531 1111 236778888999999999999999887654 34 567788888899
Q ss_pred hhhhhHHHHhhhcccccc--cCCC
Q 007725 191 KDIGRLEEAVSDLSNAHE--VSPD 212 (591)
Q Consensus 191 ~~lg~~eeAl~~lekAl~--l~P~ 212 (591)
.+.|++++|.+.|++-.+ +.|+
T Consensus 151 ~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999987654 3454
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.87 E-value=13 Score=40.45 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=70.5
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (591)
Q Consensus 99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~ 178 (591)
+...+.+++-.|..+.-+++|.+|.+++..|+...|.+... ...+..++..+-.|-+-+|++.+---+-...++ .
T Consensus 266 n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a--~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~---~ 340 (523)
T 4b4t_S 266 SSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS--LGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQ---K 340 (523)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC--SHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCH---H
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh--hhHHHHHHHHHHhHHhhcCCCCChHHhhchhHH---H
Confidence 33457889999999999999999999999999987765321 011111222223333335665542222222111 1
Q ss_pred chHHHHHhccchh--hhhhHHHHhhhcccccccCCCCChHH
Q 007725 179 NVKALYRRGQAYK--DIGRLEEAVSDLSNAHEVSPDDGTIA 217 (591)
Q Consensus 179 ~~~a~~~rg~al~--~lg~~eeAl~~lekAl~l~P~~~~a~ 217 (591)
....|+.+..|+. .+..|+.++..++..+..|-.+.-+.
T Consensus 341 ~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~ 381 (523)
T 4b4t_S 341 SLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCV 381 (523)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHH
Confidence 2345677777663 56678888888888888886654443
No 264
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=29.10 E-value=17 Score=30.93 Aligned_cols=18 Identities=28% Similarity=0.777 Sum_probs=11.0
Q ss_pred CCchHHHHHHHHHHHHHh
Q 007725 567 KPGMILAICMLILAVILH 584 (591)
Q Consensus 567 ~~~~~~~~~~l~~a~~l~ 584 (591)
++.|++.+|++|+.+||.
T Consensus 84 kk~~i~l~~~~i~~~i~~ 101 (109)
T 3hd7_B 84 RKKIMIIICCVILGIIIA 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CcceehHHHHHHHHHHHH
Confidence 344667777666666554
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=26.87 E-value=5.4 Score=41.98 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=50.6
Q ss_pred ccceeeeccccchhhhhhcceeeec----c--ccchHHHHHhccchhhhhhHHHHhhhcccccccC---CCCChHHHHHh
Q 007725 151 NSMSCYLKTKQYDECIKVGSEVLAY----D--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS---PDDGTIADVLR 221 (591)
Q Consensus 151 Nla~~y~~lg~y~eAi~~~~~AL~l----d--P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~---P~~~~a~~~L~ 221 (591)
+++..|+..|+|.+|++.+.+.++. | ..-.+.|......|..++++.++...|.+|.... +.++.+...+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7888999999999998777776653 2 1235567777788888899999998888886543 23344444444
Q ss_pred HH
Q 007725 222 DA 223 (591)
Q Consensus 222 ~a 223 (591)
.+
T Consensus 184 ~~ 185 (394)
T 3txn_A 184 LQ 185 (394)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 266
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.19 E-value=19 Score=33.57 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=39.3
Q ss_pred eccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (591)
Q Consensus 157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl 207 (591)
+..|+++.|.+.++.. ++...|.++|.+-...|+++-|..+|+++-
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4678888888887654 678899999999999999999999999884
No 267
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=24.99 E-value=25 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHhcccccccccchhHHHHHHHhhhcccc
Q 007725 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (591)
Q Consensus 106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (591)
...+|..+...|++++|+.+|.+||...|.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 356788888899999999999999998664
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.74 E-value=20 Score=37.83 Aligned_cols=78 Identities=9% Similarity=-0.022 Sum_probs=59.8
Q ss_pred eeeccccceeeeccccchhhhhhcceeeeccc---cchHHHHHhccchhhhhhHHHHhhhcccccccCC--CCChHHHHH
Q 007725 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDA---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--DDGTIADVL 220 (591)
Q Consensus 146 ~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP---~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P--~~~~a~~~L 220 (591)
..++..+|..|++.|++.+|++.|.++..... .....++..-.++...++|..+...++++..+.. .+......+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34778899999999999999999999876543 3567888888899999999999999999866533 334444444
Q ss_pred hHH
Q 007725 221 RDA 223 (591)
Q Consensus 221 ~~a 223 (591)
..+
T Consensus 211 k~~ 213 (429)
T 4b4t_R 211 KTY 213 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 269
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=24.50 E-value=28 Score=27.67 Aligned_cols=22 Identities=23% Similarity=0.729 Sum_probs=16.7
Q ss_pred ccccccccccCCCchHHHHHHH
Q 007725 556 GVKKTKNWLLGKPGMILAICML 577 (591)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~l 577 (591)
...|+-+|+++||++.++++++
T Consensus 28 ~l~rvE~WilrNp~~al~~~~~ 49 (75)
T 3j27_B 28 HAQRIETWILRHPGFTIMAAIL 49 (75)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHHHHH
Confidence 3445889999999887777664
No 270
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.66 E-value=2.9e+02 Score=25.98 Aligned_cols=9 Identities=0% Similarity=-0.034 Sum_probs=4.2
Q ss_pred HHHHHhhcC
Q 007725 13 LAQEQMNRM 21 (591)
Q Consensus 13 ~A~e~m~~m 21 (591)
.|...+.++
T Consensus 147 ~a~~aL~~~ 155 (280)
T 1oyz_A 147 ATAFAISVI 155 (280)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 444444444
No 271
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.36 E-value=27 Score=27.67 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=30.5
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (591)
Q Consensus 185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~ 222 (591)
.+|..+...|++++|+.+|-+|+.+.|.=.+....+..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 47899999999999999999999999876555544433
No 272
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=23.13 E-value=25 Score=28.86 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=12.2
Q ss_pred cchhhHHHhHHHHhhhcccccc
Q 007725 538 NDLDRMMLWADRVQRGVQGVKK 559 (591)
Q Consensus 538 ~~l~~~~~~~~~~q~~~~~~~~ 559 (591)
|.|+.+..-++.++.....+++
T Consensus 33 ekL~~L~~kt~~L~~~s~~F~~ 54 (91)
T 3hd7_A 33 QKLSELDDRADALQAGASQFET 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555444444
No 273
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.51 E-value=6.4 Score=40.20 Aligned_cols=109 Identities=6% Similarity=-0.065 Sum_probs=63.0
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeeccccceeeecccc----------chhhhh
Q 007725 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQ----------YDECIK 167 (591)
Q Consensus 104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~Nla~~y~~lg~----------y~eAi~ 167 (591)
......|..++..|+|.+|+..|+..|...+-..- .+..+++..|.-.+-.+-+++.+ --|-..
T Consensus 115 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA 194 (325)
T 3mv2_A 115 NEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA 194 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 33556788899999999999999999987653211 11222222221111111111111 001111
Q ss_pred hcceeeeccccchHHHHHhccch-hhhhhHHHHhhhcccccccCCCC
Q 007725 168 VGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDD 213 (591)
Q Consensus 168 ~~~~AL~ldP~~~~a~~~rg~al-~~lg~~eeAl~~lekAl~l~P~~ 213 (591)
+|+ -.++.|.+...-.+.|... ++.++|.-|....++.|++.|..
T Consensus 195 YFT-~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 195 YFT-KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HGG-GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred Hhc-cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 222 2345566655555555543 68899999999999999999863
No 274
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=20.20 E-value=50 Score=27.20 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=29.0
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhcc
Q 007725 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 133 (591)
Q Consensus 101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~ 133 (591)
+.+..+...|..+++.++|.+|+..|++++.+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 457788889999999999999999999998753
Done!