BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007727
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 199/568 (35%), Positives = 279/568 (49%), Gaps = 79/568 (13%)
Query: 49 MGQSHLFEKWAAPGVDDNEKR-AFFDQVAKLNSSYPGGLKSYIKTARELLA------DSK 101
+ Q HLFE W + NE++ A + ++ YPGG+ YI+ ELLA D
Sbjct: 21 LDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFA 80
Query: 102 AGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKV 161
A + P P + L E AG FVLVAGGLGERLGY+ IKV
Sbjct: 81 ALEMP-----PLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKV 135
Query: 162 ALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221
+LP ET T T +L Y+ + GK E+PF IMTSDDTH RT +LL
Sbjct: 136 SLPVETATNTTYLAYYLRW--------AQRVGGK--EVPFVIMTSDDTHDRTLQLLRELQ 185
Query: 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSG----- 276
++ + +LKQ +V C D+ A LA+D K + KPHGHGDVH+L+Y++
Sbjct: 186 ---LEVPNLHVLKQGQVFCFADSAAHLALDETGK--LLRKPHGHGDVHSLIYNATVKRDV 240
Query: 277 -------------LLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVP 323
L+ +W AG + ++F QDTN IP SL +SA +N +P
Sbjct: 241 VPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIP 300
Query: 324 RKAKEAIGGITRLTHADGRS-MVINVEYNQLDPLLRATGFPDGD-VNCETGYSPFPGNIN 381
R KE IG + R G +V NVEYN + RA GD V+ TG+SPFPG++N
Sbjct: 301 RVPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVN 360
Query: 382 QLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPP-SAKV 440
L+ +L Y++ L+++ G + EF+NPKY D ++ SFK R+E +MQD +V
Sbjct: 361 TLVFKLSSYVDRLRESHGIVPEFINPKYSDETRRSFKKPARIESLMQDIALLFSEDDYRV 420
Query: 441 GFTVMDTWLAYAPVKNNPEDAAK-VPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPV 499
G TV + + +Y PVKN+ E+AA V +GN + A +GE A Y L+ G
Sbjct: 421 GGTVFERF-SYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLP----- 474
Query: 500 QEVFNGQEVEVWPRLTWKPKWGLTFSEI-----KNKVSGS-------------CSVSQKS 541
+F + EV K +G+ I SGS + Q S
Sbjct: 475 --LFYSSQPEV---TVAKDAFGVRLFPIIVLDTVCASSGSLDDLARVFPTPEKVHIDQHS 529
Query: 542 TMVIKGRNVVLEDLSLNGALIIDSVDDA 569
T++++GR V++E L L GAL I D+
Sbjct: 530 TLIVEGR-VIIESLELYGALTIRGPTDS 556
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 199/568 (35%), Positives = 279/568 (49%), Gaps = 79/568 (13%)
Query: 49 MGQSHLFEKWAAPGVDDNEKR-AFFDQVAKLNSSYPGGLKSYIKTARELLA------DSK 101
+ Q HLFE W + NE++ A + ++ YPGG+ YI+ ELLA D
Sbjct: 21 LDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFA 80
Query: 102 AGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKV 161
A + P P + L E AG FVLVAGGLGERLGY+ IKV
Sbjct: 81 ALEMP-----PLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKV 135
Query: 162 ALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221
+LP ET T T +L Y+ + GK E+PF IMTSDDTH RT +LL
Sbjct: 136 SLPVETATNTTYLAYYLRW--------AQRVGGK--EVPFVIMTSDDTHDRTLQLLRELQ 185
Query: 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSG----- 276
++ + +LKQ +V C D+ A LA+D K + KPHGHGDVH+L+Y++
Sbjct: 186 ---LEVPNLHVLKQGQVFCFADSAAHLALDETGK--LLRKPHGHGDVHSLIYNATVKRDV 240
Query: 277 -------------LLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVP 323
L+ +W AG + ++F QDTN IP SL +SA +N +P
Sbjct: 241 VPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIP 300
Query: 324 RKAKEAIGGITRLTHADGRS-MVINVEYNQLDPLLRATGFPDGD-VNCETGYSPFPGNIN 381
R KE IG + R G +V NVEYN + RA GD V+ TG+SPFPG++N
Sbjct: 301 RVPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVN 360
Query: 382 QLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPP-SAKV 440
L+ +L Y++ L+++ G + EF+NPKY D ++ SFK R+E +MQD +V
Sbjct: 361 TLVFKLSSYVDRLRESHGIVPEFINPKYSDETRRSFKKPARIESLMQDIALLFSEDDYRV 420
Query: 441 GFTVMDTWLAYAPVKNNPEDAAK-VPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPV 499
G TV + + +Y PVKN+ E+AA V +GN + A +GE A Y L+ G
Sbjct: 421 GGTVFERF-SYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLP----- 474
Query: 500 QEVFNGQEVEVWPRLTWKPKWGLTFSEI-----KNKVSGS-------------CSVSQKS 541
+F + EV K +G+ I SGS + Q S
Sbjct: 475 --LFYSSQPEV---TVAKDAFGVRLFPIIVLDTVCASSGSLDDLARVFPTPEKVHIDQHS 529
Query: 542 TMVIKGRNVVLEDLSLNGALIIDSVDDA 569
T++++GR V++E L L GAL I D+
Sbjct: 530 TLIVEGR-VIIESLELYGALTIRGPTDS 556
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 19/321 (5%)
Query: 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLA 98
Q ++ + Q LF+ + + +D +++ F DQ++ + P L S ++ A +
Sbjct: 6 QQQIIDSFKQANQDQLFQYYDSLTID--QQQEFIDQLSTIEE--PAKLISTVEQAIQFSQ 61
Query: 99 DSKAGKNPFDGFT--PSVPTGEVLKFGDDTFINYEQAGVKEAKN--AAFVLVAGGLGERL 154
+ +N FT P+ T L D N+ + G+K N A +L+AGG G RL
Sbjct: 62 TNSTSRN----FTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRL 117
Query: 155 GYNGIKVALPAETTTGTCFLQNYIECILALQESSCR-LAEGKCQEIPFAIMTSDDTHSRT 213
G + K E + Q E IL +++ + + L K I + IMTS T + T
Sbjct: 118 GSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177
Query: 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273
+ N+YFG+ QV Q + C + ++ ++ KN I P G+G ++ L
Sbjct: 178 ESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKN--SICQSPDGNGGLYKALK 235
Query: 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAV-PRKAKEAIGG 332
+G+L + + G+K + + N L+ A P +G + K++ + + V R A E++G
Sbjct: 236 DNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGL 295
Query: 333 ITRLTHADGRSMVINVEYNQL 353
I L + + VI EY+++
Sbjct: 296 IV-LDQDNQKPCVI--EYSEI 313
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 140/324 (43%), Gaps = 32/324 (9%)
Query: 41 ELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADS 100
+L L + GQ HL W ++ E+ + A+L + L + + A E S
Sbjct: 5 DLKLTLSKAGQEHLLRFW-----NELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQS 59
Query: 101 KAGKNPFDGFTPSVPTGEVLKFG---DDTFINYEQAGVKE--AKNAAFVLVAGGLGERLG 155
KN D VP EVL D +E G+ + A +L+AGG G RLG
Sbjct: 60 SHQKN-VDARMEPVPR-EVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLG 117
Query: 156 YNGIK----VALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 211
K V LP+ T Q E IL LQ+ + + KC IP+ IMTS T
Sbjct: 118 VAYPKGMYDVGLPSRKT----LFQIQAERILKLQQVAEKYYGNKCI-IPWYIMTSGRTME 172
Query: 212 RTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHAL 271
T+E + YFG+K V +Q + + D ++ ++ KNK + P G+G ++
Sbjct: 173 STKEFFTKHKYFGLKKENVIFFQQGMLPAM-SFDGKIILEEKNK--VSMAPDGNGGLYRA 229
Query: 272 LYSSGLLKEWHDAGLKWVLFFQDTNGLLFK-AIPASLGVSATKQYHVNSLAVPR-KAKEA 329
L + ++++ G+ W + + +L K A P +G K + V + E
Sbjct: 230 LAAQNIVEDMEQRGI-WSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEP 288
Query: 330 IGGITRLTHADGRSMVINVEYNQL 353
+G + R+ DG V VEY+++
Sbjct: 289 VGVVCRV---DGVYQV--VEYSEI 307
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 140/324 (43%), Gaps = 32/324 (9%)
Query: 41 ELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADS 100
+L L + GQ HL W ++ E+ + A+L + L + + A E S
Sbjct: 5 DLKLTLSKAGQEHLLRFW-----NELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQS 59
Query: 101 KAGKNPFDGFTPSVPTGEVLKFG---DDTFINYEQAGVKE--AKNAAFVLVAGGLGERLG 155
KN D VP EVL D +E G+ + A +L+AGG G RLG
Sbjct: 60 SHQKN-VDARMEPVPR-EVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLG 117
Query: 156 YNGIK----VALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 211
K V LP+ T Q E IL LQ+ + + KC IP+ IMTS T
Sbjct: 118 VAYPKGMYDVGLPSRKT----LFQIQAERILKLQQVAEKYYGNKCI-IPWYIMTSGRTME 172
Query: 212 RTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHAL 271
T+E + YFG+K V +Q + + D ++ ++ KNK + P G+G ++
Sbjct: 173 STKEFFTKHKYFGLKKENVIFFQQGMLPAM-SFDGKIILEEKNK--VSMAPDGNGGLYRA 229
Query: 272 LYSSGLLKEWHDAGLKWVLFFQDTNGLLFK-AIPASLGVSATKQYHVNSLAVPR-KAKEA 329
L + ++++ G+ W + + +L K A P +G K + V + E
Sbjct: 230 LAAQNIVEDMEQRGI-WSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEP 288
Query: 330 IGGITRLTHADGRSMVINVEYNQL 353
+G + R+ DG V VEY+++
Sbjct: 289 VGVVCRV---DGVYQV--VEYSEI 307
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 142/325 (43%), Gaps = 34/325 (10%)
Query: 41 ELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVA-----KLNSSYPGGLKSYIKTARE 95
+L + L + GQ HL + W + + ++ + ++ +LNS + + + +++ +
Sbjct: 17 DLKQRLSQAGQEHLLQFWNE--LSEAQQXELYXELQAXNFEELNSFFRKAIGEFDRSSHQ 74
Query: 96 LLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKE--AKNAAFVLVAGGLGER 153
D++ P + E L+ +E G+ + A +L+AGG G R
Sbjct: 75 EKVDARXEPVPRQVLGSATRDQEQLQ-------AWESEGLSQISQNKVAVLLLAGGQGTR 127
Query: 154 LGYNGIK----VALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDT 209
LG + K V LP+ T Q E IL LQ+ + + KC IP+ I TS T
Sbjct: 128 LGVSYPKGXYDVGLPSHKT----LFQIQAERILKLQQLAEKHHGNKCT-IPWYIXTSGRT 182
Query: 210 HSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVH 269
T+E + +FG+K V +Q + D ++ ++ KNK + P G+G ++
Sbjct: 183 XESTKEFFTKHKFFGLKKENVVFFQQGXLPAX-SFDGKIILEEKNK--VSXAPDGNGGLY 239
Query: 270 ALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKE 328
L + ++++ G+ + + N L+ A P +G K + V + E
Sbjct: 240 RALAAQNIVEDXEQRGICSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTE 299
Query: 329 AIGGITRLTHADGRSMVINVEYNQL 353
+G + R+ DG V VEY+++
Sbjct: 300 PVGVVCRV---DGVYQV--VEYSEI 319
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 149/371 (40%), Gaps = 36/371 (9%)
Query: 141 AAFVLVAGGLGERLGYNGIK--VALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQE 198
A + AGG G RLG+ K LP E Q E +L LQE + + K
Sbjct: 36 TALITPAGGQGSRLGFEHPKGMFVLPFEIPKSI--FQMTSERLLRLQELASEYSHQKNVM 93
Query: 199 IPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRI 258
I + +MT+++T + + YFG+ Q+ Q + +D N ++ + K+K +
Sbjct: 94 IHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFN-GKILYEKKDKPYM 152
Query: 259 QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVN 318
P+GHG + L +G+L+ ++ G+K+ + N L P +G Q +
Sbjct: 153 --APNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEIC 210
Query: 319 SLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378
V + KE G+ L R V VEY +L L +G+ G+ G
Sbjct: 211 IKIVKKGFKEEKVGV--LVKEQERIKV--VEYTELTDELNKQ-LSNGEFIYNCGHISING 265
Query: 379 NINQLILELG----PYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTL 434
+ + PY KK FVN + S + + E D
Sbjct: 266 YSTSFLEKAAEYQLPYHIAKKKV-----PFVNEQ-GIVIHPSENNGIKKEIFFFD---VF 316
Query: 435 PPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQ 494
P + KV + ++ ++ +KN+ ++ + + + + Y N L+KAGA
Sbjct: 317 PLATKVSIFEIQRFIEFSALKNSLNES--------FDNVNTVKRDWYRLNIYYLKKAGAI 368
Query: 495 VDD---PVQEV 502
VDD P+ E+
Sbjct: 369 VDDSKSPICEI 379
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQE 198
+ A + + GGLG +G NG K L + G FL ALQ R C
Sbjct: 75 RQAVVLKLNGGLGTGMGLNGPKSLL--QVKNGQTFLD-----FTALQLEHFRQVR-NCN- 125
Query: 199 IPFAIMTSDDTHSRTQELLESN-SYFGMKPTQVKLLKQEKVACLDDN--DARLAMDPKNK 255
+PF +M S T T+ L + + + + ++L++ DN DP +
Sbjct: 126 VPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCE 185
Query: 256 YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296
+ P GHGDV+ +LYSSG L G +++ N
Sbjct: 186 W----VPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN 222
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 137/340 (40%), Gaps = 44/340 (12%)
Query: 112 PSVPTGEVLKFGDDTFINYEQA-------GVKEAKNAAFVL-VAGGLGERLGYNGIK--V 161
PSV G++ + +D+ YE+ + N V+ + GGLG +G G K +
Sbjct: 91 PSVDWGKIQRPPEDSIQPYEKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLI 150
Query: 162 ALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221
+ E T FL ++ I L ++ ++P +M S +T T+++L+ +
Sbjct: 151 GVRNENT----FLDLTVQQIEHLNKTYN-------TDVPLVLMNSFNTDEDTKKILQKYN 199
Query: 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTK----PHGHGDVHALLYSSGL 277
+ +K + Q + ++ ++ L + Y + P GHGD++A Y+SGL
Sbjct: 200 HCRVK---IYTFNQSRYPRIN-KESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGL 255
Query: 278 LKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAK--EAIGGITR 335
L + G +++ F + +LG + Y +N L P K E + +T
Sbjct: 256 LDTFIGEGKEYI----------FVSNIDNLG-ATVDLYILNHLMNPPNGKRCEFVMEVTN 304
Query: 336 LTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP-GNINQLILELGPYMEEL 394
T AD + + +Y L+ P V+ S F N N L + L
Sbjct: 305 KTRADVKGGTL-TQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQ 363
Query: 395 KKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTL 434
++ ++ VN K D + T + ++ + +L
Sbjct: 364 EQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSL 403
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 14/150 (9%)
Query: 148 GGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD 207
GGLG +G G K + E G FL ++ +Q + G C+ +P +M S
Sbjct: 87 GGLGTTMGCTGPKSVI--EVRDGLTFLD-----LIVIQIENLNNKYG-CK-VPLVLMNSF 137
Query: 208 DTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQT-KPHGHG 266
+TH T +++E + + K +V D + K K + P GHG
Sbjct: 138 NTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVA----DEFVPWPSKGKTDKEGWYPPGHG 193
Query: 267 DVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296
DV L +SG L + G ++V N
Sbjct: 194 DVFPALMNSGKLDTFLSQGKEYVFVANSDN 223
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 14/150 (9%)
Query: 148 GGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD 207
GGLG +G G K + E G FL ++ +Q + G C+ +P +M S
Sbjct: 87 GGLGTTMGCTGPKSVI--EVRDGLTFLD-----LIVIQIENLNNKYG-CK-VPLVLMNSF 137
Query: 208 DTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQT-KPHGHG 266
+TH T +++E + + K +V D + K K + P GHG
Sbjct: 138 NTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVA----DEFVPWPSKGKTDKEGWYPPGHG 193
Query: 267 DVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296
DV L +SG L + G ++V N
Sbjct: 194 DVFPALMNSGKLDTFLSQGKEYVFVANSDN 223
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|B Chain B, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|C Chain C, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|D Chain D, R292d Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 81 SYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKN 140
S G T + ++ +S+ ++GFT + G + DD I E ++ K
Sbjct: 84 SLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTV-LVDDGLIGMEVTAIEGNKV 142
Query: 141 AAFVLVAGGLGERLGYN--GIKVALPA 165
VL G LGE G N G+ +ALPA
Sbjct: 143 ICKVLNNGDLGENKGVNLPGVSIALPA 169
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|B Chain B, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|C Chain C, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|D Chain D, Pyruvate Kinase From E. Coli In The T-State
Length = 470
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 81 SYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKN 140
S G T + ++ +S+ ++GFT + G + DD I E ++ K
Sbjct: 84 SLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTV-LVDDGLIGMEVTAIEGNKV 142
Query: 141 AAFVLVAGGLGERLGYN--GIKVALPA 165
VL G LGE G N G+ +ALPA
Sbjct: 143 ICKVLNNGDLGENKGVNLPGVSIALPA 169
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|B Chain B, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|C Chain C, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|D Chain D, Structure R271l Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 81 SYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKN 140
S G T + ++ +S+ ++GFT + G + DD I E ++ K
Sbjct: 84 SLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTV-LVDDGLIGMEVTAIEGNKV 142
Query: 141 AAFVLVAGGLGERLGYN--GIKVALPA 165
VL G LGE G N G+ +ALPA
Sbjct: 143 ICKVLNNGDLGENKGVNLPGVSIALPA 169
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 196 CQE-IPFAIMTSDDTHSRTQELLESNS--YFGMKPTQVKLLKQEKVACLDDN--DARLAM 250
C E + F + S +T + T+ L++ + + ++V+L + + L D A A
Sbjct: 121 CSEHLRFXLXDSFNTSASTKSFLKARYPWLYQVFDSEVELXQNQVPKILQDTLEPAAWAE 180
Query: 251 DPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKW 288
+P ++ P GHGD++ LY SG L+E + G ++
Sbjct: 181 NPAYEW----APPGHGDIYTALYGSGKLQELVEQGYRY 214
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 249 AMDPKNKYRIQTKPHGHGDVH--AL-LYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301
A+ P R+++ P G +V AL + GL +EW +A LK +L FQD G L++
Sbjct: 505 ALLPLKVVRVESLPPGLLEVAEGALGRFPLGLWREWVEAPLKPLLTFQDGKGALYR 560
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 28 LKKNLHLLSSEQVELAKMLMEMGQSHLFEKWAAPGVDDNE 67
LK+N L + VE+ +L + E+W PG+++N+
Sbjct: 194 LKENSPLQKTINVEMLNLLYSRVIAEFTERWLGPGIEENQ 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,427,458
Number of Sequences: 62578
Number of extensions: 797823
Number of successful extensions: 1722
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 29
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)