Query 007727
Match_columns 591
No_of_seqs 236 out of 792
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 14:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 2E-128 5E-133 1072.5 52.3 566 15-581 3-571 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 1E-97 2E-102 807.4 38.6 449 38-531 21-484 (493)
3 PLN02474 UTP--glucose-1-phosph 100.0 3.8E-94 8.2E-99 775.6 37.5 435 84-582 24-461 (469)
4 PTZ00339 UDP-N-acetylglucosami 100.0 3.4E-91 7.3E-96 758.8 36.6 451 43-530 2-473 (482)
5 cd06424 UGGPase UGGPase cataly 100.0 5.6E-90 1.2E-94 712.9 27.9 315 141-458 1-315 (315)
6 KOG2638 UDP-glucose pyrophosph 100.0 4E-88 8.6E-93 696.7 26.1 438 84-588 52-496 (498)
7 PF01704 UDPGP: UTP--glucose-1 100.0 3.3E-85 7.2E-90 704.3 25.8 412 86-558 2-420 (420)
8 KOG2388 UDP-N-acetylglucosamin 100.0 2.4E-83 5.2E-88 678.1 25.0 445 39-532 3-462 (477)
9 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 3.9E-76 8.4E-81 617.0 27.3 312 129-458 2-323 (323)
10 cd00897 UGPase_euk Eukaryotic 100.0 7.3E-76 1.6E-80 605.9 24.8 297 138-482 1-299 (300)
11 COG4284 UDP-glucose pyrophosph 100.0 3.4E-71 7.3E-76 587.4 30.4 442 37-582 13-467 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 1.4E-62 3.1E-67 502.8 27.1 265 141-456 1-266 (266)
13 COG1207 GlmU N-acetylglucosami 98.3 7.7E-05 1.7E-09 80.2 21.2 275 140-519 2-280 (460)
14 PRK14356 glmU bifunctional N-a 98.2 0.00053 1.2E-08 75.6 24.5 41 140-183 5-45 (456)
15 PRK14359 glmU bifunctional N-a 98.1 0.0016 3.4E-08 71.2 26.3 178 140-395 2-180 (430)
16 PRK15480 glucose-1-phosphate t 98.0 0.00022 4.7E-09 74.7 16.8 177 140-388 3-182 (292)
17 TIGR01207 rmlA glucose-1-phosp 97.9 0.00037 7.9E-09 72.8 15.7 174 143-388 2-178 (286)
18 PRK05293 glgC glucose-1-phosph 97.9 0.00054 1.2E-08 73.8 17.4 194 140-395 3-205 (380)
19 PRK00844 glgC glucose-1-phosph 97.8 0.00055 1.2E-08 74.7 17.1 205 137-395 2-212 (407)
20 cd04197 eIF-2B_epsilon_N The N 97.8 0.00051 1.1E-08 68.2 14.8 68 143-226 3-73 (217)
21 cd06425 M1P_guanylylT_B_like_N 97.7 0.001 2.3E-08 66.5 15.5 176 143-390 3-183 (233)
22 cd02538 G1P_TT_short G1P_TT_sh 97.7 0.00075 1.6E-08 67.9 14.4 68 142-224 2-72 (240)
23 TIGR02092 glgD glucose-1-phosp 97.7 0.00097 2.1E-08 71.6 15.3 145 140-323 2-150 (369)
24 cd02509 GDP-M1P_Guanylyltransf 97.7 0.001 2.3E-08 68.8 14.8 195 142-397 2-209 (274)
25 cd04189 G1P_TT_long G1P_TT_lon 97.6 0.0017 3.7E-08 64.8 15.8 69 141-225 1-72 (236)
26 cd06915 NTP_transferase_WcbM_l 97.6 0.0023 4.9E-08 62.8 15.9 173 143-391 1-178 (223)
27 PF00483 NTP_transferase: Nucl 97.6 0.00049 1.1E-08 69.1 11.2 184 143-395 2-192 (248)
28 PRK14352 glmU bifunctional N-a 97.6 0.0034 7.4E-08 70.0 18.9 186 140-395 4-191 (482)
29 PRK14353 glmU bifunctional N-a 97.6 0.0016 3.5E-08 71.6 16.0 64 140-219 5-68 (446)
30 TIGR01173 glmU UDP-N-acetylglu 97.6 0.015 3.2E-07 63.9 23.4 62 142-219 2-63 (451)
31 cd06422 NTP_transferase_like_1 97.6 0.0016 3.5E-08 64.4 14.4 65 143-224 2-69 (221)
32 cd02540 GT2_GlmU_N_bac N-termi 97.6 0.0047 1E-07 61.2 17.8 180 143-395 1-182 (229)
33 cd04181 NTP_transferase NTP_tr 97.6 0.0014 2.9E-08 64.2 13.6 139 143-333 1-142 (217)
34 PRK02862 glgC glucose-1-phosph 97.6 0.0024 5.1E-08 70.4 16.7 145 140-323 3-152 (429)
35 PRK00725 glgC glucose-1-phosph 97.5 0.004 8.6E-08 68.5 17.8 208 137-396 12-225 (425)
36 PRK14360 glmU bifunctional N-a 97.5 0.003 6.4E-08 69.6 16.5 63 141-219 2-64 (450)
37 cd02524 G1P_cytidylyltransfera 97.5 0.0021 4.5E-08 65.4 14.0 158 143-342 1-169 (253)
38 PLN02241 glucose-1-phosphate a 97.5 0.0018 3.8E-08 71.5 14.2 216 139-395 2-231 (436)
39 PRK05450 3-deoxy-manno-octulos 97.4 0.0056 1.2E-07 61.6 16.3 185 140-394 2-193 (245)
40 cd06426 NTP_transferase_like_2 97.4 0.0021 4.5E-08 63.4 12.8 135 143-331 1-139 (220)
41 PRK14358 glmU bifunctional N-a 97.4 0.002 4.3E-08 72.1 13.9 146 140-342 7-154 (481)
42 PRK14357 glmU bifunctional N-a 97.4 0.0049 1.1E-07 67.8 16.6 176 142-395 2-179 (448)
43 PRK14355 glmU bifunctional N-a 97.4 0.0044 9.6E-08 68.6 16.3 185 140-395 3-188 (459)
44 cd02508 ADP_Glucose_PP ADP-glu 97.4 0.0025 5.5E-08 62.3 12.8 137 143-319 1-143 (200)
45 TIGR01208 rmlA_long glucose-1- 97.3 0.0088 1.9E-07 63.9 17.0 140 143-333 2-144 (353)
46 PF01128 IspD: 2-C-methyl-D-er 97.3 0.00028 6.1E-09 71.0 5.1 65 141-219 1-65 (221)
47 cd06428 M1P_guanylylT_A_like_N 97.3 0.01 2.2E-07 60.4 16.4 178 144-390 2-187 (257)
48 TIGR02623 G1P_cyt_trans glucos 97.3 0.0078 1.7E-07 61.5 15.4 159 143-334 2-163 (254)
49 KOG1322 GDP-mannose pyrophosph 97.3 0.005 1.1E-07 64.5 13.7 187 139-394 8-198 (371)
50 COG1213 Predicted sugar nucleo 97.2 0.00093 2E-08 67.1 7.9 67 141-222 4-70 (239)
51 cd02517 CMP-KDO-Synthetase CMP 97.2 0.015 3.2E-07 58.3 16.6 127 140-323 1-129 (239)
52 cd04198 eIF-2B_gamma_N The N-t 97.1 0.0076 1.6E-07 59.8 12.6 132 143-323 3-137 (214)
53 PRK13385 2-C-methyl-D-erythrit 97.1 0.00056 1.2E-08 68.6 4.6 66 141-220 3-68 (230)
54 TIGR00454 conserved hypothetic 97.0 0.0013 2.8E-08 64.2 6.6 61 142-219 2-62 (183)
55 PLN02728 2-C-methyl-D-erythrit 97.0 0.00077 1.7E-08 69.1 4.9 65 140-218 24-88 (252)
56 PF14134 DUF4301: Domain of un 97.0 0.016 3.6E-07 63.8 15.1 263 157-460 165-507 (513)
57 TIGR02091 glgC glucose-1-phosp 97.0 0.015 3.3E-07 62.1 14.8 197 143-396 1-207 (361)
58 cd02523 PC_cytidylyltransferas 96.9 0.021 4.5E-07 56.8 14.5 122 143-323 1-126 (229)
59 COG2266 GTP:adenosylcobinamide 96.9 0.0019 4E-08 62.2 6.2 61 142-220 2-62 (177)
60 PF12804 NTP_transf_3: MobA-li 96.9 0.0016 3.4E-08 61.1 5.7 56 143-218 1-56 (160)
61 PRK14354 glmU bifunctional N-a 96.9 0.024 5.3E-07 62.5 15.7 40 141-183 3-42 (458)
62 TIGR01105 galF UTP-glucose-1-p 96.9 0.003 6.5E-08 66.3 8.0 64 140-219 3-69 (297)
63 PLN02917 CMP-KDO synthetase 96.8 0.059 1.3E-06 56.5 17.3 183 140-395 47-237 (293)
64 cd04182 GT_2_like_f GT_2_like_ 96.8 0.0027 5.9E-08 60.4 6.3 38 141-183 1-38 (186)
65 TIGR01479 GMP_PMI mannose-1-ph 96.8 0.029 6.3E-07 62.6 15.3 195 143-396 3-210 (468)
66 PRK13368 3-deoxy-manno-octulos 96.7 0.051 1.1E-06 54.4 15.4 59 140-219 2-61 (238)
67 cd02513 CMP-NeuAc_Synthase CMP 96.7 0.061 1.3E-06 53.0 15.3 131 140-324 1-137 (223)
68 COG1208 GCD1 Nucleoside-diphos 96.6 0.0058 1.3E-07 65.8 8.3 141 141-334 2-146 (358)
69 TIGR03310 matur_ygfJ molybdenu 96.5 0.0045 9.7E-08 59.4 6.1 52 143-211 2-53 (188)
70 PRK00560 molybdopterin-guanine 96.5 0.0024 5.3E-08 62.7 4.2 39 140-183 8-47 (196)
71 PRK10122 GalU regulator GalF; 96.4 0.0088 1.9E-07 62.8 7.8 64 139-218 2-68 (297)
72 COG0746 MobA Molybdopterin-gua 96.4 0.014 3E-07 57.5 8.4 38 140-183 4-41 (192)
73 TIGR02665 molyb_mobA molybdopt 96.3 0.0039 8.4E-08 59.9 3.9 38 141-182 1-38 (186)
74 KOG1460 GDP-mannose pyrophosph 96.3 0.24 5.2E-06 51.6 16.7 161 141-355 3-172 (407)
75 cd02503 MobA MobA catalyzes th 96.2 0.0038 8.3E-08 59.7 3.6 38 141-183 1-38 (181)
76 COG0448 GlgC ADP-glucose pyrop 96.2 0.061 1.3E-06 58.1 12.6 200 139-397 4-211 (393)
77 COG1211 IspD 4-diphosphocytidy 96.1 0.0062 1.3E-07 61.6 4.7 65 140-218 4-68 (230)
78 COG1209 RfbA dTDP-glucose pyro 96.1 0.013 2.9E-07 60.1 7.0 120 143-313 3-125 (286)
79 TIGR00453 ispD 2-C-methyl-D-er 96.1 0.0041 8.8E-08 61.5 3.2 39 142-183 1-39 (217)
80 PRK02726 molybdopterin-guanine 96.1 0.0052 1.1E-07 60.5 3.9 39 140-183 7-45 (200)
81 cd02516 CDP-ME_synthetase CDP- 96.1 0.0048 1E-07 60.8 3.6 40 141-183 1-40 (218)
82 PRK00317 mobA molybdopterin-gu 96.1 0.0054 1.2E-07 59.6 3.9 39 140-182 3-41 (193)
83 PRK00155 ispD 2-C-methyl-D-ery 96.1 0.0053 1.2E-07 61.2 3.8 41 140-183 3-43 (227)
84 TIGR03202 pucB xanthine dehydr 96.0 0.0067 1.5E-07 58.8 4.1 37 142-183 2-38 (190)
85 TIGR01099 galU UTP-glucose-1-p 95.8 0.019 4E-07 58.4 6.5 62 142-219 2-66 (260)
86 PRK14490 putative bifunctional 95.7 0.0095 2.1E-07 64.4 4.0 39 140-183 174-212 (369)
87 PRK14489 putative bifunctional 95.7 0.01 2.2E-07 64.1 4.3 40 139-182 4-43 (366)
88 cd02541 UGPase_prokaryotic Pro 95.6 0.023 4.9E-07 58.1 6.3 62 142-219 2-66 (267)
89 PRK09382 ispDF bifunctional 2- 95.5 0.012 2.6E-07 63.9 3.8 42 139-183 4-45 (378)
90 PRK14500 putative bifunctional 95.4 0.014 3.1E-07 62.6 4.2 39 140-183 160-198 (346)
91 PRK09451 glmU bifunctional N-a 95.4 0.026 5.7E-07 62.4 6.2 63 140-218 5-67 (456)
92 COG0836 {ManC} Mannose-1-phosp 95.3 0.025 5.4E-07 59.4 5.1 199 141-397 2-213 (333)
93 cd04183 GT2_BcE_like GT2_BcbE_ 95.1 0.014 3E-07 58.2 2.8 38 143-183 1-41 (231)
94 cd02507 eIF-2B_gamma_N_like Th 94.7 0.078 1.7E-06 52.7 6.9 63 143-221 3-68 (216)
95 PRK13389 UTP--glucose-1-phosph 94.7 0.059 1.3E-06 56.7 6.2 63 141-219 9-74 (302)
96 PRK15460 cpsB mannose-1-phosph 94.5 0.075 1.6E-06 59.5 6.6 197 141-397 6-220 (478)
97 TIGR00466 kdsB 3-deoxy-D-manno 94.3 0.12 2.7E-06 52.3 7.5 35 143-183 2-36 (238)
98 cd02518 GT2_SpsF SpsF is a gly 92.6 0.32 6.9E-06 48.6 7.1 60 143-219 2-62 (233)
99 COG4750 LicC CTP:phosphocholin 91.6 0.15 3.3E-06 50.0 3.1 38 143-183 3-43 (231)
100 COG1210 GalU UDP-glucose pyrop 89.1 0.62 1.4E-05 48.2 5.2 60 143-218 7-69 (291)
101 COG2068 Uncharacterized MobA-r 88.2 0.59 1.3E-05 46.3 4.3 61 140-217 5-65 (199)
102 TIGR03584 PseF pseudaminic aci 76.9 45 0.00097 33.4 12.7 131 143-324 2-134 (222)
103 COG1861 SpsF Spore coat polysa 63.4 14 0.00031 37.3 5.4 64 140-222 3-69 (241)
104 COG1791 Uncharacterized conser 40.5 1.8E+02 0.004 28.3 8.6 112 438-580 24-137 (181)
105 KOG1462 Translation initiation 36.9 40 0.00087 36.8 4.0 82 140-242 9-93 (433)
106 COG1535 EntB Isochorismate hyd 29.5 2.5E+02 0.0054 27.8 7.7 101 171-294 50-151 (218)
107 COG1212 KdsB CMP-2-keto-3-deox 25.3 2E+02 0.0044 29.5 6.5 89 140-242 3-106 (247)
108 PF14969 DUF4508: Domain of un 22.9 68 0.0015 28.4 2.4 50 26-81 37-88 (98)
109 PF13106 DUF3961: Domain of un 22.4 48 0.001 24.5 1.1 15 220-234 4-21 (40)
110 PF02348 CTP_transf_3: Cytidyl 21.7 2.8E+02 0.006 26.9 6.8 34 143-184 2-37 (217)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=2.4e-128 Score=1072.54 Aligned_cols=566 Identities=70% Similarity=1.122 Sum_probs=526.0
Q ss_pred hCCCchhhccCcchhhhcccCChhHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 007727 15 LGIDGAFADSAPNLKKNLHLLSSEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTAR 94 (591)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~ 94 (591)
+-++.......+.|+.++..|++++++|+++|.++||+|||++|++++.+++||++|++||..+|..|++++..|+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~ 82 (615)
T PLN02830 3 LSVASKSDSSVPSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAK 82 (615)
T ss_pred CcccccccccccccccccccCChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 44556666678999999999999999999999999999999999998667999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHHHHHHHHhhcceEEEEEcCCcCccCCccCcccccccccCCCcchH
Q 007727 95 ELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFL 174 (591)
Q Consensus 95 ~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~l 174 (591)
+++..+..+.++|+++.|.+|.+..+++++.+..+|++.|+++|+|||||+|||||||||||++||++||+++++++|||
T Consensus 83 ~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~~~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~l 162 (615)
T PLN02830 83 ELLADSKEGVNPFEGWTPSVPEGEVLEYGSEEFVELEEAGLREAGNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYL 162 (615)
T ss_pred HHHhhcccCCCchhhcccCCCccccccccchhhhHHHHHHHHHhCcEEEEEecCCcccccCCCCCCcceecccCCCCcHH
Confidence 99986655678899998867888888888777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCC
Q 007727 175 QNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKN 254 (591)
Q Consensus 175 ql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~ 254 (591)
|++++||+++|+++.+...+..+.||||||||++||++|++||++|+|||++++||+||+|+++||+++++|++++++.+
T Consensus 163 ql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d 242 (615)
T PLN02830 163 QLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPND 242 (615)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCC
Confidence 99999999999998654222335899999999999999999999999999999999999999999998888999995555
Q ss_pred CCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccCcccCccceEE
Q 007727 255 KYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (591)
Q Consensus 255 ~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~ 334 (591)
+++++|+|+||||+|.||++||+|++|+++|+||+||+||||+|++.+||.|||||+.++++|++|||+|+|+|++|++|
T Consensus 243 ~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~ 322 (615)
T PLN02830 243 PYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIA 322 (615)
T ss_pred CCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCCCcccceEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCcccCCCC
Q 007727 335 RLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASK 414 (591)
Q Consensus 335 ~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~ 414 (591)
++++.||+..++||||+|++++++.+++|+|++.+++||++|||||||+|++|++|+++|+.+.+.||+||||||.|.++
T Consensus 323 ~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~~ 402 (615)
T PLN02830 323 KLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKYKDATK 402 (615)
T ss_pred EEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcccCCCC
Confidence 98888999777789999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCccc-ccCCCCCCCCChhhHHHHHHHHHHHHHHHcCC
Q 007727 415 TSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA-AKVPKGNPYHSATSGEMAIYCANSLILRKAGA 493 (591)
Q Consensus 415 ~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~-~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~ 493 (591)
+.++.++++||+||||++.+..++++||++++||.+|+||||+..+| +|+++|+|++||.+++.|+|+.++++|+++|+
T Consensus 403 ~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~ 482 (615)
T PLN02830 403 TAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGA 482 (615)
T ss_pred ceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999888899998889999999999996666 55699999999999999999999999999999
Q ss_pred cccCCccc-ccCCeeecCCCeEEEcCCCCCCHHHHhhhc-CCCCccCCCceEEEEeceEEeeCeEEEEEEEEEeCCCCeE
Q 007727 494 QVDDPVQE-VFNGQEVEVWPRLTWKPKWGLTFSEIKNKV-SGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEV 571 (591)
Q Consensus 494 ~v~~~~~~-~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~-~~~~~i~~~s~L~v~g~~~~~~~v~L~G~v~I~a~~~~~~ 571 (591)
.+..+... .+++++++.+|.|.|+|.|+++++++++|| +++|+|+++|+|+|+|+++||+||+|+|+|+|+|++|+++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~~~~~ 562 (615)
T PLN02830 483 DVEEPVEDVVFNGIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLDGALVVRAVPGAEV 562 (615)
T ss_pred ccccCccccccCCcccCCCCeEEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCCCCeE
Confidence 88755544 578899999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred EecCCeEeeC
Q 007727 572 CYIMPILRYG 581 (591)
Q Consensus 572 ~i~~~~~~~~ 581 (591)
.| ++.+..|
T Consensus 563 ~i-~g~~v~N 571 (615)
T PLN02830 563 TV-GGLRVKN 571 (615)
T ss_pred Ee-cCeEEec
Confidence 99 5644443
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=1e-97 Score=807.44 Aligned_cols=449 Identities=24% Similarity=0.339 Sum_probs=383.0
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 007727 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTG 117 (591)
Q Consensus 38 ~~~~l~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~ 117 (591)
+.++|+++|.++||+|||++|++++ ++||++|++||.++|..+ +. ..+++++. +. ..+++.+.| +|++
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~ls--~~e~~~L~~qL~~iD~~~---l~---~~~~~~~~-~~--~~~~~~i~P-~p~~ 88 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDELS--PEERDLLVRDIESLDLPR---ID---RIIRCSLR-SQ--GLPVPAIEP-VPEN 88 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhhCC--HHHHHHHHHHHHhcCHHH---HH---HHHHHHhh-cc--CCchhccCC-CChh
Confidence 4567999999999999999999965 899999999999999753 22 33344442 21 235677777 5776
Q ss_pred ccccCCC---chhhHHHHHHHHhhc--ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhc
Q 007727 118 EVLKFGD---DTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLA 192 (591)
Q Consensus 118 ~~l~~~~---~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~ 192 (591)
...++.. ....+|++.|+++|+ |||||+||||||||||+++|||++||++++++||||++++||+++|+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~- 167 (493)
T PLN02435 89 SVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQA- 167 (493)
T ss_pred hccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhh-
Confidence 5544422 455789999999994 9999999999999999999999999999999999999999999999998653
Q ss_pred cC----CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchh
Q 007727 193 EG----KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV 268 (591)
Q Consensus 193 ~g----~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i 268 (591)
+| ..+.||||||||+.||++|++||++|+|||++++||+||+|+++||++ .+|++++ +++++++|+|+||||+
T Consensus 168 ~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l--~~~~~i~~~P~GnGgi 244 (493)
T PLN02435 168 SSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIM--ETPFKVAKAPDGNGGV 244 (493)
T ss_pred cccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCccc--CCCcccccCCCCCcHH
Confidence 22 235899999999999999999999999999999999999999999995 7999999 8899999999999999
Q ss_pred hHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccCc-ccCccceEEEEecCCCceeEEE
Q 007727 269 HALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVIN 347 (591)
Q Consensus 269 ~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~vG~i~~~~~~dG~~~v~~ 347 (591)
|.||++||+|++|+++|+|||||+||||+|++++||.|||||+.+++||++|||+|+ |.|++|++|+. +.||++.|
T Consensus 245 y~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~-~~~g~~~v-- 321 (493)
T PLN02435 245 YAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRR-GKGGPLTV-- 321 (493)
T ss_pred HHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEe-cCCCCEEE--
Confidence 999999999999999999999999999999999999999999999999999999975 99999999974 36898866
Q ss_pred EeccCccHHHHhcCCCC-CCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCc---ccCCCCCcccCcchh
Q 007727 348 VEYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTSFKSSTRL 423 (591)
Q Consensus 348 VEYsel~~~l~~~~~~~-g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK---~~d~~~~~~~~~~kl 423 (591)
|||+||+++++.+++++ |++. +.+||||||||++++++++.+.....+|+|++.| |.|.. .+.+||
T Consensus 322 vEYsEl~~~~~~~~~~~~g~L~------~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~----~ngiK~ 391 (493)
T PLN02435 322 VEYSELDQAMASAINQQTGRLR------YCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGY----TMGLKL 391 (493)
T ss_pred EEeccCCHHHHhccCccccccc------cchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCC----cceEEe
Confidence 99999999999888775 7765 5589999999999999998754444599999876 55532 368999
Q ss_pred hhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCccccc
Q 007727 424 ECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVF 503 (591)
Q Consensus 424 E~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~ 503 (591)
|+||||+ |+.+.++++++|+|++|||||||+++.+ .|||.|||.+|+++|++||+++|+.+.+....
T Consensus 392 E~FiFDv---f~~a~~~~~~eV~R~~EFaPlKN~~g~~--------~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~-- 458 (493)
T PLN02435 392 EQFIFDA---FPYAPSTALFEVLREEEFAPVKNANGSN--------FDTPESARLLVLRLHTRWVVAAGGFLTHSVPL-- 458 (493)
T ss_pred eeeeecc---hhhcCceEEEEEchhhccCcccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHcCCEecCCccc--
Confidence 9999998 4445678999999999999999999863 79999999999999999999999977532110
Q ss_pred CCeeecCCCeEEEcCCCCCCHHHH-hhhc
Q 007727 504 NGQEVEVWPRLTWKPKWGLTFSEI-KNKV 531 (591)
Q Consensus 504 ~~~~~~~~P~v~l~p~f~~~~~~~-~~k~ 531 (591)
....++++|+++|+ |+.++.+ +.|.
T Consensus 459 ~~~~vEisP~~sY~---gE~L~~~~~~~~ 484 (493)
T PLN02435 459 YATGVEVSPLCSYA---GENLEAICRGRT 484 (493)
T ss_pred cCCcEEeCCceeeC---CCCchhhcCCCe
Confidence 01357889999999 8888766 4443
No 3
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=3.8e-94 Score=775.63 Aligned_cols=435 Identities=16% Similarity=0.177 Sum_probs=369.1
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCch-hhHHHHHHHHhhcceEEEEEcCCcCccCCccCcccc
Q 007727 84 GGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDT-FINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVA 162 (591)
Q Consensus 84 ~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~-~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~ 162 (591)
.++..|...+.++++.. .+..+|+.+.|+ +++...+|++.. ...-.....++|+|+|||+|||||||||||++|||+
T Consensus 24 ~e~~~f~~~~~~~~~~~-~~~i~~~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~L~k~avlkLnGGlGTrmG~~~PKs~ 101 (469)
T PLN02474 24 NEKSGFISLVSRYLSGE-AQHIEWSKIQTP-TDEVVVPYDKLAPVPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSV 101 (469)
T ss_pred HHHHHHHHHHHHHHhCC-CCeecHHHccCC-chhhCcChhhccccccchhHHHHHHhcEEEEEecCCcccccCCCCCcee
Confidence 34567778888887754 346788888874 555555554421 111122456788999999999999999999999999
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEe
Q 007727 163 LPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLD 242 (591)
Q Consensus 163 lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~ 242 (591)
+|+ ++++||||++++||+++++.|+ +.|||+||||+.||++|++||++|++| +++|++|+|+++||++
T Consensus 102 i~v--~~~~sfldl~~~qi~~l~~~~g-------~~vPl~iMtS~~T~~~T~~~l~k~~~~---~~~i~~F~Q~~~P~l~ 169 (469)
T PLN02474 102 IEV--RNGLTFLDLIVIQIENLNKKYG-------CNVPLLLMNSFNTHDDTQKIVEKYTNS---NIEIHTFNQSQYPRVV 169 (469)
T ss_pred EEc--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCchhHHHHHHHHHcCCC---ccceEEEecCceeeEe
Confidence 997 7999999999999999999986 489999999999999999999999997 5689999999999996
Q ss_pred cCCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeee
Q 007727 243 DNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLA 321 (591)
Q Consensus 243 ~~~g~~~l~-~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kv 321 (591)
.+|++.+. +......+|+|+||||+|.||++||+|++|+++|+||+||+|||| |++++||.|+||++.++++|+|||
T Consensus 170 -~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ev 247 (469)
T PLN02474 170 -ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCMEV 247 (469)
T ss_pred -cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceEEEE
Confidence 56666662 111235669999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccCc-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCc
Q 007727 322 VPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA 400 (591)
Q Consensus 322 v~r~-~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~ 400 (591)
|+|+ +.+++|++|.. +|++++ +||+|++++.+.... |.+. |++| |||||||+|++++++++.....
T Consensus 248 ~~Kt~~d~kgG~l~~~---dgk~~l--vEysqvp~e~~~~f~--~~~k----f~~f--Ntnn~w~~L~~l~~~~~~~~l~ 314 (469)
T PLN02474 248 TPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEFK--SIEK----FKIF--NTNNLWVNLKAIKRLVEADALK 314 (469)
T ss_pred eecCCCCCCccEEEEE---CCEEEE--EEEecCCHHHHHhhc--cccc----ceee--eeeeEEEEHHHHHHHhhcCCCC
Confidence 9986 66777778765 999988 999999998765532 2222 6655 9999999999999998764455
Q ss_pred cccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHH
Q 007727 401 IKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAI 480 (591)
Q Consensus 401 l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl 480 (591)
++.++|||..|+ .+.+|||+||||++++|+++ ..++||| +||+||||+++. .++|+|+
T Consensus 315 ~~~I~n~k~~~g-----~kv~q~Et~ig~ai~~f~~~---~~v~VpR-~rF~PVK~~~dl-------------l~~rsdl 372 (469)
T PLN02474 315 MEIIPNPKEVDG-----VKVLQLETAAGAAIRFFDNA---IGINVPR-SRFLPVKATSDL-------------LLVQSDL 372 (469)
T ss_pred ceeecCCCCCCC-----eeEEEeHHHHHHHHHhCCCc---eEEEEch-hhccCCCCCCCH-------------HHHHHHH
Confidence 566789998864 36799999999999998543 4569999 579999999875 8999999
Q ss_pred HHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEeeCeEEEEE
Q 007727 481 YCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGA 560 (591)
Q Consensus 481 ~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~~~~~~i~~~s~L~v~g~~~~~~~v~L~G~ 560 (591)
|.++++|+..+|++.. ...|.|+|+|.| .++++|.+||+++|+|.+++||+|+|||+||+||+|+|+
T Consensus 373 y~l~~~~l~~~~~~~~------------~~~p~IeL~~~f-~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~ 439 (469)
T PLN02474 373 YTLVDGFVIRNKARTN------------PSNPSIELGPEF-KKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGK 439 (469)
T ss_pred HHhccCeEEecCcccC------------CCCCcEEECccc-ccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEE
Confidence 9999999998887642 246889999996 589999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEecCCeEeeCC
Q 007727 561 LIIDSVDDAEVCYIMPILRYGG 582 (591)
Q Consensus 561 v~I~a~~~~~~~i~~~~~~~~~ 582 (591)
|+|+|++|.+++||+|.|+.|.
T Consensus 440 v~i~~~~~~~~~ip~g~~l~~~ 461 (469)
T PLN02474 440 VTITAKSGVKLEIPDGAVLENK 461 (469)
T ss_pred EEEEcCCCCeeecCCCcEecce
Confidence 9999999999999999998764
No 4
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=3.4e-91 Score=758.77 Aligned_cols=451 Identities=22% Similarity=0.258 Sum_probs=374.1
Q ss_pred HHHHHHCCCcccccccccCCCCHHHHHHHHHHH-h---hcCCCCCccHHHHHHHHHHHHhhccCCC-----CCCCCCCCC
Q 007727 43 AKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQV-A---KLNSSYPGGLKSYIKTARELLADSKAGK-----NPFDGFTPS 113 (591)
Q Consensus 43 ~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL-~---~id~~~~~~l~~~~~~~~~~l~~s~~~~-----~~~~~~~p~ 113 (591)
+++|.++||+|||+||++++ ++||++|.+|| + .+| +..+...++.+......+.... ..-+.+.|
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l~--~~e~~~l~~ql~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 75 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRRS--EGEFTPLATQILSSLTNVD---FKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEP- 75 (482)
T ss_pred hhhhhhcCHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccC---HHHHHHHHHHHhhhhhcccccccccccccccccCC-
Confidence 57899999999999999965 99999999999 6 555 3345555665543322211100 01123444
Q ss_pred CCCcccccC--CCchhhHHHHHHHHhhc--ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhh
Q 007727 114 VPTGEVLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSC 189 (591)
Q Consensus 114 vp~~~~l~~--~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~ 189 (591)
+|.....+. ..++..+|++.|+++|+ |||+|+||||+|||||++.||+++||.+++++||||++++||++++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~ 155 (482)
T PTZ00339 76 PNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAV 155 (482)
T ss_pred CCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhh
Confidence 455333222 23566889999999998 79999999999999999999999999888999999999999999999985
Q ss_pred hhccC--CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch
Q 007727 190 RLAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD 267 (591)
Q Consensus 190 ~~~~g--~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~ 267 (591)
+. +| ....||||||||+.||+.|++||++|+|||+++++|+||+|+++||++.++|++++ +++++++|+|+||||
T Consensus 156 ~~-~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill--~~~~~i~~~P~GnGg 232 (482)
T PTZ00339 156 AV-SGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIM--SSQGSLCTAPGGNGD 232 (482)
T ss_pred cc-cccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCccc--CCCCceeeCCCCCcH
Confidence 43 22 12479999999999999999999999999999999999999999999877899999 778899999999999
Q ss_pred hhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCC-cceeeeccCcccCccceEEEEecCCCceeEE
Q 007727 268 VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQY-HVNSLAVPRKAKEAIGGITRLTHADGRSMVI 346 (591)
Q Consensus 268 i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~-~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~ 346 (591)
+|.||++||+|++|+++|+||+||+||||+|++++||.||||++++++ +++.+||+|.|.|++|++|++ +|++.|
T Consensus 233 iy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~---~g~~~v- 308 (482)
T PTZ00339 233 VFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLK---DYEWQV- 308 (482)
T ss_pred HHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEe---CCcccE-
Confidence 999999999999999999999999999999999999999999999999 999999988899999999986 888876
Q ss_pred EEeccCccHHHHhcCCCC-CCCCcCCCCCCCccceeeeEEehhhhHHHHhh-ccCccccccCCc---ccCCCCCcccCcc
Q 007727 347 NVEYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKK-TGGAIKEFVNPK---YKDASKTSFKSST 421 (591)
Q Consensus 347 ~VEYsel~~~l~~~~~~~-g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~-~~~~l~~~vnpK---~~d~~~~~~~~~~ 421 (591)
|||+||++.++...+++ |.+. +++||||||||++++++++++. ....||.|++.| |.|... +.++.+
T Consensus 309 -vEYsEi~~~~~~~~~~~~g~l~------f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-~~png~ 380 (482)
T PTZ00339 309 -VEYTEINERILNNDELLTGELA------FNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-DKTMGI 380 (482)
T ss_pred -EEEeccChhhhhcccccCCeec------ccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-CCccee
Confidence 99999999988766542 4433 5689999999999999988753 233589999876 556322 446789
Q ss_pred hhhhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCccc
Q 007727 422 RLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQE 501 (591)
Q Consensus 422 klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~ 501 (591)
|||+||||++.+ +.++++++|+|++|||||||+++.+ .|||.|||.+|+++|++||+++|+.+.....
T Consensus 381 K~E~FiFDvf~~---~~~~~~~ev~R~~eFsPlKNa~g~~--------~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~- 448 (482)
T PTZ00339 381 KLEAFIFDIFRY---AKNVLILEVDREDEFAPIKNADGAA--------ADTILNAQKLLLSLHTRWLEAALETVAGNPR- 448 (482)
T ss_pred eehhhhhhHHHh---ccccceeeechhhccccccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHCCCeeecccc-
Confidence 999999998544 5678999999999999999999874 6999999999999999999999997753210
Q ss_pred ccCCeeecCCCeEEEcCCCCCCHHHHhhh
Q 007727 502 VFNGQEVEVWPRLTWKPKWGLTFSEIKNK 530 (591)
Q Consensus 502 ~~~~~~~~~~P~v~l~p~f~~~~~~~~~k 530 (591)
..+..++++|+++|+ |+.++.+++|
T Consensus 449 -~~~~~~Eisp~~sy~---ge~l~~~~~~ 473 (482)
T PTZ00339 449 -EGLNLCEISPLVSYG---GEGLFQYPGK 473 (482)
T ss_pred -CCCceEEecCcceeC---CCCcccccCc
Confidence 012468999999999 8888766554
No 5
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=5.6e-90 Score=712.94 Aligned_cols=315 Identities=68% Similarity=1.107 Sum_probs=298.6
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (591)
+|+|+||||||||||+++||+++||++++++||||++++||+++|+++.+ +..+.||||||||+.||++|++||++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~---~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK---GEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc---cCCCceeEEEECCCchhHHHHHHHHHC
Confidence 58999999999999999999999999999999999999999999998863 223589999999999999999999999
Q ss_pred CCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 007727 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (591)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~ 300 (591)
+|||++++||+||+|+++||+++.+|++.+..+++++++|+|+||||+|.||+++|+||+|+++|+||++|+||||+|++
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 99999999999999999999976889984222778999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccce
Q 007727 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (591)
Q Consensus 301 ~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gNi 380 (591)
++||.|+||++.+++||++|||+|.|+|+||++|++++.||+++|+|||||||++++++++.++|+..+.+||++|||||
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 99999999999999999999999999999999999877899999999999999999999998888888888999999999
Q ss_pred eeeEEehhhhHHHHhhccCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCC
Q 007727 381 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNP 458 (591)
Q Consensus 381 nn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~ 458 (591)
|+|+|++++|.+.++++.+.+|+|+||||.|.+++.+++|.||||||||++++|+.+.++++++|+||.|||||||+.
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCCC
Confidence 999999999999999888899999999999999889999999999999999999989999999999999999999973
No 6
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-88 Score=696.71 Aligned_cols=438 Identities=19% Similarity=0.235 Sum_probs=382.7
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHHHHHHHHhhcceEEEEEcCCcCccCCccCccccc
Q 007727 84 GGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVAL 163 (591)
Q Consensus 84 ~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~l 163 (591)
.++..|+..++|++.+.. ....|+++.+| |++.+++|++.. .. ..+..+|.|+||++|+||+||.|||.+||+++
T Consensus 52 ~e~~~F~~Lf~RyL~~~~-~~~~wdkI~~p-~~d~vv~y~~i~--~~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS~i 126 (498)
T KOG2638|consen 52 TELSGFFNLFSRYLREKA-PTIDWDKIRPP-PEDAVVPYDDIK--NV-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVI 126 (498)
T ss_pred hhHHHHHHHHHHHHhccC-CccchhhccCC-Chhhcccccccc--ch-hhHHHhhhheEEEEecCCcCCccccCCCceeE
Confidence 467789999999998653 67789999885 667777887542 23 67888999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEec
Q 007727 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (591)
Q Consensus 164 pv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~ 243 (591)
+| ++|.||||+.++||+.|+++|+ +++|+++|||++|+++|.+++++|.+ .+.+|++|.|+++|+++.
T Consensus 127 eV--R~g~tFLDL~V~QIe~LN~~Y~-------~dVPlvLMNSfnTdedT~kil~ky~~---~kv~i~TF~QS~~PRi~~ 194 (498)
T KOG2638|consen 127 EV--RDGLTFLDLTVRQIENLNKTYN-------VDVPLVLMNSFNTDEDTQKILKKYAG---SKVDIKTFNQSKYPRIDK 194 (498)
T ss_pred EE--cCCCchhHHHHHHHHHHHhhcC-------CCCCEEEecccccchHHHHHHHHhcC---CceeEEEeccccCCcccc
Confidence 99 7999999999999999999997 58999999999999999999999987 478899999999999988
Q ss_pred CCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeec
Q 007727 244 NDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAV 322 (591)
Q Consensus 244 ~~g~~~l~-~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv 322 (591)
++..|+.+ ..+....+||||||||+|.+|+.||+||+|+++|+||+||+|+|| ||+++|..+|.+++.++++|.|||+
T Consensus 195 etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDN-LGAtvDL~ILn~~i~~~~ey~MEvT 273 (498)
T KOG2638|consen 195 ETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDN-LGATVDLNILNHVINNNIEYLMEVT 273 (498)
T ss_pred ccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEecccc-ccceeeHHHHHHHhcCCCceEEEec
Confidence 88877775 345567899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCC---CCCCccceeeeEEehhhhHHHHhhccC
Q 007727 323 PRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG---YSPFPGNINQLILELGPYMEELKKTGG 399 (591)
Q Consensus 323 ~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~---f~~f~gNinn~~~~l~~l~~~l~~~~~ 399 (591)
+||.+|.+||++. +-+|+.+. +||.+. |+.++.+|++ |++| ||||+|++|++++++++....
T Consensus 274 dKT~aDvKgGtLi--~y~G~lrl--LEiaQV---------P~ehv~eFkS~kkFkif--NTNNlWinLkavKrlve~~~l 338 (498)
T KOG2638|consen 274 DKTRADVKGGTLI--QYEGKLRL--LEIAQV---------PKEHVDEFKSIKKFKIF--NTNNLWINLKAVKKLVEENAL 338 (498)
T ss_pred ccchhhcccceEE--eecCEEEE--EEeccC---------ChhHhhhhccceeEEEe--ccCCeEEehHHHHHHhhcCcc
Confidence 9999999999873 34677776 777555 5556777766 7777 999999999999999998888
Q ss_pred ccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHH
Q 007727 400 AIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMA 479 (591)
Q Consensus 400 ~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~d 479 (591)
.|++|+|||..+.. .+++|||+++++++++|+++ .|+ .||| +||.|||+++|+ ...+++
T Consensus 339 ~meIi~N~kti~~~----~~viQleTa~GaaIk~F~na--~gv-~VpR-sRFlPVKt~sDL-------------lLv~S~ 397 (498)
T KOG2638|consen 339 NMEIIVNPKTIDRG----IEVIQLETAAGAAIKFFDNA--IGV-NVPR-SRFLPVKTCSDL-------------LLVMSN 397 (498)
T ss_pred cceeecChhhccCC----ceEEEEhhhhhHHHHhCCCc--eee-eccc-cccccccccccc-------------eeeecc
Confidence 99999999988742 37899999999999999875 355 8999 999999999998 567777
Q ss_pred HHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEeeCeEEEE
Q 007727 480 IYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNG 559 (591)
Q Consensus 480 l~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~~~~~~i~~~s~L~v~g~~~~~~~v~L~G 559 (591)
||.+.+.-|+ .++. +..+..|.|.|+|+| .++++|..||+++|+|.+++||+|+||||||+||+|+|
T Consensus 398 Ly~ld~Gsl~------l~~~------r~~~t~P~vkLg~~F-~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkG 464 (498)
T KOG2638|consen 398 LYDLDNGSLT------LSPS------RFGPTPPLVKLGSEF-KKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKG 464 (498)
T ss_pred eeeccCCeEE------echh------hcCCCCCeeecchhh-hHHHHHHhcCCCCCccceeceEEEeccEEeccceEEee
Confidence 7776653221 1222 345678999999996 58999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCeEEecCCeEeeCCee---eeec
Q 007727 560 ALIIDSVDDAEVCYIMPILRYGGQS---CKIS 588 (591)
Q Consensus 560 ~v~I~a~~~~~~~i~~~~~~~~~~~---~~~~ 588 (591)
+|||+|++|.+|+||+|.|+.|.-- |+|-
T Consensus 465 tViIia~~~~~i~IP~gsVLEn~~v~gn~~il 496 (498)
T KOG2638|consen 465 TVIIIANEGDRIDIPDGSVLENKIVSGNLRIL 496 (498)
T ss_pred EEEEEecCCCeeecCCCCeeecceEecccccc
Confidence 9999999999999999999988754 6553
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=3.3e-85 Score=704.28 Aligned_cols=412 Identities=26% Similarity=0.354 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHHHHHHH--HhhcceEEEEEcCCcCccCCccCccccc
Q 007727 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGV--KEAKNAAFVLVAGGLGERLGYNGIKVAL 163 (591)
Q Consensus 86 l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~--~~l~kvavv~LaGG~GTRLG~~~pK~~l 163 (591)
+..|+..+.+++.++.....+|+.+.++.|+ ...++++.....| ..|. .+++|+|||+||||||||||+++||+++
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~ 79 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPPE-EVVDYESLKEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLI 79 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GTG-CEEEHHHHHHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGS
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCChh-hcCChhHhccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCCCcce
Confidence 5689999999998755677889999886444 4445543322224 3444 4555999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEec
Q 007727 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (591)
Q Consensus 164 pv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~ 243 (591)
|| ++++||||++++||+++++.|+ +.|||+||||+.||++|++||++ |||++.+ |++|+|+++||++
T Consensus 80 ~v--~~~~t~ldl~~~qi~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~- 146 (420)
T PF01704_consen 80 PV--REGKTFLDLIVEQIEALNKKYG-------VDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAID- 146 (420)
T ss_dssp EE--ETTEEHHHHHHHHHHHHHHHHT-------TT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEE-
T ss_pred ec--CCcccHHHHHHHHHHHHhcccc-------ccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEe-
Confidence 99 7999999999999999999986 48999999999999999999999 9999877 9999999999997
Q ss_pred CCCceecCCCC--C-CccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceee
Q 007727 244 NDARLAMDPKN--K-YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSL 320 (591)
Q Consensus 244 ~~g~~~l~~~~--~-~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~k 320 (591)
.+|++++..+. + ....|+|+||||+|.||++||+|++|+++|+||+||+|||| |++++||.||||+++++++|++|
T Consensus 147 ~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~e 225 (420)
T PF01704_consen 147 ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGME 225 (420)
T ss_dssp TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEE
T ss_pred CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhccchhhee
Confidence 56666662211 1 13469999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eccCc-ccCccceEEEEecCCCceeEEEEeccCccHHHHh-cCCCCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhcc
Q 007727 321 AVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRA-TGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTG 398 (591)
Q Consensus 321 vv~r~-~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~-~~~~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~ 398 (591)
||+|+ |.|++|++|.. +|++++ |||+|+++...+ .++. ++|.+| ||||+||++++++++++...
T Consensus 226 vv~Kt~~dek~Gvl~~~---~G~~~v--vEysqip~~~~~~~~~~-------~~~~~F--ntnNi~~~l~~l~~~~~~~~ 291 (420)
T PF01704_consen 226 VVPKTSPDEKGGVLCRY---DGKLQV--VEYSQIPKEHMAEFKDI-------KGFLLF--NTNNIWFSLDFLKRLLERDE 291 (420)
T ss_dssp EEE-CSTTTSSEEEEEE---TTEEEE--EEGGGS-HHGHHHHTST-------TTSBEE--EEEEEEEEHHHHHHHHHTTT
T ss_pred eeecCCCCCceeEEEEe---CCccEE--EEeccCCHHHHHhhhcc-------ccceEE--EeceeeEEHHHHHHHHHhcc
Confidence 99985 78899999976 899988 999999988433 3332 335566 99999999999999998877
Q ss_pred CccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHH
Q 007727 399 GAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEM 478 (591)
Q Consensus 399 ~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~ 478 (591)
..||+|+|+|.++... ...+.+|||++|++++..|. ..+++ +|+| +||+||||++++
T Consensus 292 ~~Lp~h~a~Kki~~~d-~~~~~~q~Et~i~~~i~~f~--~~~~v-~V~R-~rF~PvKn~~dL------------------ 348 (420)
T PF01704_consen 292 LQLPIHVAKKKIPYVD-NGIKVIQFETAIGFAIFQFD--NSFAV-EVPR-DRFAPVKNTSDL------------------ 348 (420)
T ss_dssp CCS-EEEEEEESSEEC-TEEEEEEEECGGGGGGGGCT--SEEEE-EE-G-GG--B-SSHHHH------------------
T ss_pred ccCccEEcchhccccc-CCccEEeehhhhhchHhhcc--CcEEE-EEcH-HHcCCccccCcc------------------
Confidence 8899999999662211 23578999999999888884 34455 9999 999999999986
Q ss_pred HHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEeeCeEEE
Q 007727 479 AIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLN 558 (591)
Q Consensus 479 dl~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~~~~~~i~~~s~L~v~g~~~~~~~v~L~ 558 (591)
.++++.-+.+.++....-..+.....|.|.|++.| +++++|.+||+.+|+|.++++|+|+|||+||+||+|+
T Consensus 349 -------l~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~f-~~v~~~~~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 349 -------LLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDHF-KKVDDFEKRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp -------HHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGGG-SSHHHHHHHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred -------eeeccceeccccceeeecccccCCCCCeeccCccc-CchHHhhhhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 23333333333211000001233456899999987 6899999999999999999999999999999999996
No 8
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.4e-83 Score=678.15 Aligned_cols=445 Identities=29% Similarity=0.441 Sum_probs=381.0
Q ss_pred HHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 007727 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (591)
Q Consensus 39 ~~~l~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~ 118 (591)
..++...|.++||+|||++|++++ ++++..|++|++.++..++.++.. ..+.+.. .+-..+ +|+|+..
T Consensus 3 ~~~~~~~l~~~Gq~~l~~~w~eL~--~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~~~-------~~~~~~-~p~p~~~ 70 (477)
T KOG2388|consen 3 RTKLHLILLEAGQSHLFTQWPELS--EADKESLLDQIEVLNLSRIHGLQR--ISANEDS-------KPVGEI-RPVPESK 70 (477)
T ss_pred hhHHHHHHHHcChHhHhhhchhcC--HHHHHHHHHHHHhhcccccchhhh--cChhhcc-------Cccccc-CCCCccc
Confidence 457888999999999999999966 889999999999999988766544 2332221 111223 3355543
Q ss_pred cccC---CCchhhHHHHHHHHhhc--ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhcc
Q 007727 119 VLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (591)
Q Consensus 119 ~l~~---~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~ 193 (591)
.... ...+..+|+..|+++|+ ++|++++|||||||||+++||+++|+++.+++||||+++|+|++++.++... .
T Consensus 71 ~~~~~~~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~-~ 149 (477)
T KOG2388|consen 71 SWPLKERGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMA-V 149 (477)
T ss_pred cceecccCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhh-h
Confidence 3222 23445569999999998 9999999999999999999999999999999999999999999999988765 3
Q ss_pred CCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHh
Q 007727 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (591)
Q Consensus 194 g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~ 273 (591)
++...||||||||..|++.|++||+.|+|||+.++||+||+|+++||++ .+|++++ +.+++++++|+|||++|.|+.
T Consensus 150 ~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~l--e~k~~~a~ap~gngg~y~ai~ 226 (477)
T KOG2388|consen 150 SDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFIL--EQKNSLAAAPDGNGGLYRAIK 226 (477)
T ss_pred ccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCceec--cCccchhcCCCCCcHHHHHHH
Confidence 4446999999999999999999999999999999999999999999995 7888999 888999999999999999999
Q ss_pred hcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccC-cccCccceEEEEecCC-CceeEEEEecc
Q 007727 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHAD-GRSMVINVEYN 351 (591)
Q Consensus 274 ~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~vG~i~~~~~~d-G~~~v~~VEYs 351 (591)
++ |++|.+||++|+|+|||||+|++++||+||||++.+++++++|+|+| .|.|.+|++|.. + |.+.+ ||||
T Consensus 227 ~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~---~~G~~~v--vEYs 299 (477)
T KOG2388|consen 227 DQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALK---GQGTPLV--VEYS 299 (477)
T ss_pred hh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEec---CCCceeE--EEec
Confidence 98 99999999999999999999999999999999999999999999997 689999999976 4 76655 9999
Q ss_pred CccHHHHhcCCCC-CCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCc---ccCCCC----CcccCcchh
Q 007727 352 QLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASK----TSFKSSTRL 423 (591)
Q Consensus 352 el~~~l~~~~~~~-g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK---~~d~~~----~~~~~~~kl 423 (591)
|++.+++.++.++ |++ .++|||||||+|++++++++.......+|+|+..| |.|.++ .+-++.+++
T Consensus 300 Ei~~~~a~~~~~d~g~l------~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~ 373 (477)
T KOG2388|consen 300 ELDAELAKAKAPDGGRL------LFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKL 373 (477)
T ss_pred ccCHHHHhhcccccCcc------ccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeE
Confidence 9999999999998 544 47899999999999999998776666678887654 556433 122356899
Q ss_pred hhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCccccc
Q 007727 424 ECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVF 503 (591)
Q Consensus 424 E~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~ 503 (591)
|+||||+ |+.+.++++++|+|+++|||+||+..+ ..|||.||+.+++++|.+|+..+|+.+.+.+
T Consensus 374 E~fifdv---f~~~k~f~~meV~Re~efSPlKng~~~--------~~D~p~T~~~~~l~~h~~wi~~~g~~f~~~~---- 438 (477)
T KOG2388|consen 374 EQFIFDV---FPSAKKFGLMEVPREEEFSPLKNGGKS--------STDNPSTARIALLRLHIRWIEKAGGIFSDAE---- 438 (477)
T ss_pred Eeeeeee---cccccceeEEecchhhhcCccccCCCC--------CCCChhHHHHHHHHhhhhehhccCcEEecCc----
Confidence 9999997 555678899999999999999999987 3899999999999999999999999986532
Q ss_pred CCeeecCCCeEEEcCCCCCCHHHHhhhcC
Q 007727 504 NGQEVEVWPRLTWKPKWGLTFSEIKNKVS 532 (591)
Q Consensus 504 ~~~~~~~~P~v~l~p~f~~~~~~~~~k~~ 532 (591)
..++++|.|+|. |+.++.+...+.
T Consensus 439 --~~~evs~~vsy~---GE~lEs~~~g~~ 462 (477)
T KOG2388|consen 439 --AVVEVSPLVSYA---GENLESVPSGFE 462 (477)
T ss_pred --ceEEecceeeec---ccchhhccccce
Confidence 468899999998 889999886443
No 9
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=3.9e-76 Score=616.96 Aligned_cols=312 Identities=28% Similarity=0.450 Sum_probs=284.5
Q ss_pred HHHHHHHHhhc--ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecC
Q 007727 129 NYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTS 206 (591)
Q Consensus 129 ~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS 206 (591)
+|++.|+++|+ ++|+|+||||+|||||+++||+++|++.++++||||+++++|++++.++++. +|+...|||+||||
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~-~~~~~~ip~~imtS 80 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEA-SGKKVPIPWYIMTS 80 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCCceEEEEcC
Confidence 68999999998 9999999999999999999999999988899999999999999999999854 45456899999999
Q ss_pred ccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCc
Q 007727 207 DDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGL 286 (591)
Q Consensus 207 ~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~ 286 (591)
+.||++|++||++++|||+++++|+||.|+++||++ .+|++++ +++++++|+|+||||+|.+|++||+|++|+++|+
T Consensus 81 ~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l--~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~ 157 (323)
T cd04193 81 EATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILL--EEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGI 157 (323)
T ss_pred hhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCcccc--CCCCccccCCCCchHHHHHHHHCChHHHHHhCCC
Confidence 999999999999999999999999999999999995 7899999 7788999999999999999999999999999999
Q ss_pred eEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccCc-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCC
Q 007727 287 KWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDG 365 (591)
Q Consensus 287 eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g 365 (591)
||+||+||||+|++++||.||||++++++||++|||+|+ |.|++|++|.+ ||++.+ |||+|++++.+.+.+++|
T Consensus 158 ~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~---~g~~~v--vEysel~~~~~~~~~~~g 232 (323)
T cd04193 158 KYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV---DGKPQV--VEYSEISDELAEKRDADG 232 (323)
T ss_pred EEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE---CCeEEE--EEeecCCHHHHhccCcCC
Confidence 999999999999999999999999999999999999987 99999999976 999887 999999999988887777
Q ss_pred CCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCcc---cCCCCC----cccCcchhhhhhccccccCCCCC
Q 007727 366 DVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKY---KDASKT----SFKSSTRLECMMQDYPKTLPPSA 438 (591)
Q Consensus 366 ~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~---~d~~~~----~~~~~~klE~~i~D~~~~f~~~~ 438 (591)
++. +++||||+|||++++++++++.....||.|+++|. .|..+. +..+++|||+||||++.++ .
T Consensus 233 ~l~------f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~---~ 303 (323)
T cd04193 233 ELQ------YNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFA---K 303 (323)
T ss_pred cEe------cccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhC---C
Confidence 764 56999999999999999998765557999999983 353332 2346789999999997665 5
Q ss_pred ceeEEEecccceeeccccCC
Q 007727 439 KVGFTVMDTWLAYAPVKNNP 458 (591)
Q Consensus 439 ~~~~~~v~R~~~FsPvKN~~ 458 (591)
++.+++|+|++||+||||++
T Consensus 304 ~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 304 NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred ceEEEEEChhhccccCcCCC
Confidence 67889999999999999984
No 10
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=7.3e-76 Score=605.89 Aligned_cols=297 Identities=19% Similarity=0.236 Sum_probs=262.4
Q ss_pred hcceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 138 l~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
|+|||||+||||||||||+++||+++|+ ++++||||++++||+++++.|+ +.||||||||+.||++|++||
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l 71 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKTYG-------VDVPLVLMNSFNTDEDTKKIL 71 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCcchHHHHHHH
Confidence 5799999999999999999999999999 6999999999999999999986 489999999999999999999
Q ss_pred HhCCCCCCCCCcEEEEEecceeEEecCCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 007727 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (591)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN 296 (591)
++|++ ++++|++|+|+++||++ .+|++.+. ..++++++|+|+||||+|.||++||+|++|+++|+||+||+||||
T Consensus 72 ~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN 147 (300)
T cd00897 72 KKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN 147 (300)
T ss_pred HHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc
Confidence 99886 78999999999999996 57877772 236789999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHhhcCCcceeeeccCc-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCC
Q 007727 297 GLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (591)
Q Consensus 297 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~ 375 (591)
|++++||.|||||+.++++|++|||+|+ |.|++|++|.+ ||++++ |||+|++++.+.... +.. .|.+
T Consensus 148 -L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~---~g~~~v--vEyse~p~e~~~~~~--~~~----~~~~ 215 (300)
T cd00897 148 -LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY---EGKLRL--LEIAQVPKEHVDEFK--SIK----KFKI 215 (300)
T ss_pred -ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE---CCEEEE--EEeccCCHHHHHhhc--Ccc----cceE
Confidence 9999999999999999999999999985 77899999976 999988 999999998765443 222 2554
Q ss_pred CccceeeeEEehhhhHHHHhhccCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccc
Q 007727 376 FPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVK 455 (591)
Q Consensus 376 f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvK 455 (591)
| |||||||++++++++++.....||.|+|.|.+++. .+++|||+||||++.+|+ ++.+++|||+ ||+|||
T Consensus 216 ~--nt~n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p~----~~~~qlE~~i~da~~~~~---~~~~~eV~R~-rF~PvK 285 (300)
T cd00897 216 F--NTNNLWVNLKAVKRVVEENALDLEIIVNPKTVDGG----LNVIQLETAVGAAIKNFD---NALGVNVPRS-RFLPVK 285 (300)
T ss_pred E--EEeEEEEEHHHHHHHHHhccCCCCeeecccccCCC----CCEEEeHhHhhhHHHhCC---CcEEEEEChh-hcCCCC
Confidence 4 99999999999999887655669999999977543 588999999999988874 3356799995 799999
Q ss_pred cCCcccccCCCCCCCCChhhHHHHHHH
Q 007727 456 NNPEDAAKVPKGNPYHSATSGEMAIYC 482 (591)
Q Consensus 456 N~~~~~~~~~~~~~~dsp~t~~~dl~~ 482 (591)
|++++ ...|+|+|.
T Consensus 286 n~~dl-------------l~~~sd~y~ 299 (300)
T cd00897 286 TTSDL-------------LLVRSDLYS 299 (300)
T ss_pred ChHHH-------------Hhhhhcccc
Confidence 99998 566777764
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-71 Score=587.36 Aligned_cols=442 Identities=20% Similarity=0.251 Sum_probs=354.6
Q ss_pred hhHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCC
Q 007727 37 SEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVP 115 (591)
Q Consensus 37 ~~~~~l~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~-s~~~~~~~~~~~p~vp 115 (591)
.+.......+.+..|.|+|..|...+ +.+..+.-+++..+|. ++...++++.. +......|+.++|+.|
T Consensus 13 ~~f~~~~~~l~~~~~~h~l~~l~~~s--~~~~~~~~~~~~~~d~--------~f~l~~~~ll~~s~~s~~~~~ki~~~~~ 82 (472)
T COG4284 13 FKFNSDAVSLAASQQEHLLDKLKQSS--EKQALKSFEKLLLLDI--------FFFLFSRYLLNTSKASTQEWDKIRPPNP 82 (472)
T ss_pred hhhhcchhhhhHHHHHHHHHHhhhhc--hHHHHhhhhhhhhhHH--------HHHHHHHHHhhcCcccceeecccCCCCh
Confidence 34556778899999999999998854 4455666777777764 45555565543 4445677888887544
Q ss_pred CcccccCCCchhhHHHHHHHHh--hcceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhcc
Q 007727 116 TGEVLKFGDDTFINYEQAGVKE--AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (591)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~G~~~--l~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~ 193 (591)
+. ...+++.. .+++ |+.. ++|+|||+||||||||||+++||++++|. +|+||||+++|||+.++.+|+
T Consensus 83 d~-~~~~~~~~-~~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~~~---- 152 (472)
T COG4284 83 DD-VVDYEKKI-LEGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQYN---- 152 (472)
T ss_pred hh-hccchhhc-cchh--hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHHhC----
Confidence 43 33443322 2222 4554 67999999999999999999999999994 899999999999999999997
Q ss_pred CCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHh
Q 007727 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (591)
Q Consensus 194 g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~ 273 (591)
++|||||||| .|+++|..||+.++|||+++++|+||+|+.+||+.+++|++++...+.. ++|+|+||||+|.+|+
T Consensus 153 ---~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~GnG~lf~aL~ 227 (472)
T COG4284 153 ---VDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPPGNGDLFKALK 227 (472)
T ss_pred ---CCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcc-cccCCCCCccHHHHHH
Confidence 5999999999 9999999999999999999999999999999977788999998433332 9999999999999999
Q ss_pred hcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccC-cccCccceEEEEecCCCceeEEEEeccC
Q 007727 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQ 352 (591)
Q Consensus 274 ~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~vG~i~~~~~~dG~~~v~~VEYse 352 (591)
.||++++|.++|+||++|+|||| |++++||.|+|+++.++++++||+|.| ++.+++|.++.. +|+.++ +||++
T Consensus 228 ~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~---~g~~rl--lEyse 301 (472)
T COG4284 228 SSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY---DGKLRL--LEYSE 301 (472)
T ss_pred hcchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe---CCceEE--EEEec
Confidence 99999999999999999999999 999999999999999999999999997 578888877755 898766 99999
Q ss_pred ccHHHHhcCCCCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCcccCCCC--Cc-----ccCcchhhh
Q 007727 353 LDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASK--TS-----FKSSTRLEC 425 (591)
Q Consensus 353 l~~~l~~~~~~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~--~~-----~~~~~klE~ 425 (591)
++...+.+...+|.+ .+| |+||+|+.+..+..+.+.....||+|.+.|.....+ .. -++..+||.
T Consensus 302 v~~~~~~~~~s~~~~------~~~--n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~ 373 (472)
T COG4284 302 VPNEHREEFTSDGKL------KYF--NTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFEN 373 (472)
T ss_pred CChhHhhhhccccce------eee--ccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeeccccccchhhccc
Confidence 999877666555554 467 777777777666666655556789888766433221 11 223457995
Q ss_pred -hh-ccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCccccc
Q 007727 426 -MM-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVF 503 (591)
Q Consensus 426 -~i-~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~ 503 (591)
|| ||.+.+-+ .++.++..|||..||+|+||-.+.. .
T Consensus 374 ~FI~fDlF~~~s-~~~~~~~~vpR~~~f~Plkn~~~~~---------------------------------~-------- 411 (472)
T COG4284 374 EFIPFDLFLYKS-DENGGLLLVPRFGEFSPLKNLEGSH---------------------------------F-------- 411 (472)
T ss_pred cccceeeeEEEe-cCCCceEeccccCCCCchhhccCCC---------------------------------C--------
Confidence 99 99754421 2566888999999999999988641 1
Q ss_pred CCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEeeCeEEEEEEEEEeCCCCeEEecCCeEeeCC
Q 007727 504 NGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGG 582 (591)
Q Consensus 504 ~~~~~~~~P~v~l~p~f~~~~~~~~~k~~~~~~i~~~s~L~v~g~~~~~~~v~L~G~v~I~a~~~~~~~i~~~~~~~~~ 582 (591)
...+.+..+++..|.|.+..+++|+|++.|++|++|+ .+....+++||+++++.+.
T Consensus 412 ------------------~~~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~lk-----~~~e~~~l~~~~~s~~e~~ 467 (472)
T COG4284 412 ------------------DNVETFTCGIPRIPLILELEGLTISGNVLFGRNVTLK-----YASENTSLCIPNKSFLENV 467 (472)
T ss_pred ------------------CcHHhhhcccccccchhhhccceecCceEeeecceee-----ecCCCceEeccCCeeeeee
Confidence 2344555567777789999999999999999999999 8999999999999988753
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.4e-62 Score=502.75 Aligned_cols=265 Identities=31% Similarity=0.368 Sum_probs=232.6
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (591)
+|+|+||||+|||||++.||+++|+.+++++||||+++++|++++.++.. ...|||+||||+.||+.|++||++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~-----~~~Ip~~imts~~t~~~t~~~l~~~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLY-----SCKIPEQLMNSKYTHEKTQCYFEKI 75 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhc-----CCCCCEEEEcCchhHHHHHHHHHHc
Confidence 69999999999999999999999998889999999999999999999841 1479999999999999999999999
Q ss_pred CCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 007727 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (591)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~ 300 (591)
+ +++++|++|+|+++||++ .+|...+ ++++++.|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|+.
T Consensus 76 ~---~~~~~v~~f~Q~~~P~~~-~~~~~~~--~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~ 149 (266)
T cd04180 76 N---QKNSYVITFMQGKLPLKN-DDDARDP--HNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVK 149 (266)
T ss_pred C---CCCCceEEEEeCCceEEe-CCCCccc--CCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCcc
Confidence 8 578999999999999997 4666666 677889999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCcceeeeccCcccCc-cceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccc
Q 007727 301 KAIPASLGVSATKQYHVNSLAVPRKAKEA-IGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (591)
Q Consensus 301 ~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~-vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gN 379 (591)
++||.++||++.++++++++||+|++.|. +|++|.. .+|++.+ |||+|++++++.++.++++..+..++++++||
T Consensus 150 v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~--~~g~~~~--vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n 225 (266)
T cd04180 150 VADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIAN--INGRVQL--LEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFN 225 (266)
T ss_pred ccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEe--cCCCEEE--EEeccCCHHHHhccccccCcCCCCceeeccce
Confidence 99999999999999999999999976644 5545543 1387755 99999999999887776666654558899999
Q ss_pred eeeeEEehhhhHHHHhhccCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeecccc
Q 007727 380 INQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKN 456 (591)
Q Consensus 380 inn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN 456 (591)
||||||+|++|+++++ |++++|+ ++..++|+|++||+||||
T Consensus 226 ~~~~~~~l~~l~~~~~---------------------------------d~~~~~~---~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 226 TNNLINFLVEFKDRVD---------------------------------DIIEFTD---DIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred EEEEEEEHHHHHHHHH---------------------------------HHHhccC---ceEEEEeCchhccccCCC
Confidence 9999999999988764 5544553 345679999889999998
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=7.7e-05 Score=80.18 Aligned_cols=275 Identities=18% Similarity=0.172 Sum_probs=164.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
.+.+|+||-|+||||.++-||.+-|+ .|++.++..++....+.-. .+-+ -=..-.+..++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~~~----------~i~v---VvGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALGPD----------DIVV---VVGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhcCcc----------eEEE---EEcCCHHHHHHHhcc
Confidence 46789999999999999999999998 8999999998887664211 2322 224455667777765
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCce-EEEEEeCCCcc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFFQDTNGL 298 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~e-yi~v~~vDN~L 298 (591)
.. ++.|+.|.. .+ -+|+-++ + ....+..+.+ .+.|.+=|-+|
T Consensus 66 ~~-------~v~~v~Q~e--ql--GTgHAV~--------------------~------a~~~l~~~~~g~vLVl~GD~PL 108 (460)
T COG1207 66 RD-------DVEFVLQEE--QL--GTGHAVL--------------------Q------ALPALADDYDGDVLVLYGDVPL 108 (460)
T ss_pred cc-------CceEEEecc--cC--ChHHHHH--------------------h------hhhhhhcCCCCcEEEEeCCccc
Confidence 32 567777755 11 2343333 1 1223444555 56666778788
Q ss_pred ccccch-HHHHHHhhcCCcceeeeccC-cccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCC
Q 007727 299 LFKAIP-ASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (591)
Q Consensus 299 ~~~~Dp-~~lG~~~~~~~~~~~kvv~r-~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f 376 (591)
...--. .++.++...+..+...+..- +|. --|-++ ++.+|+.. ..||..+-+++.+. + +.+
T Consensus 109 it~~TL~~L~~~~~~~~~~~tvLt~~~~dP~-GYGRIv--r~~~g~V~-~IVE~KDA~~eek~-------I------~ei 171 (460)
T COG1207 109 ITAETLEELLAAHPAHGAAATVLTAELDDPT-GYGRIV--RDGNGEVT-AIVEEKDASEEEKQ-------I------KEI 171 (460)
T ss_pred CCHHHHHHHHHhhhhcCCceEEEEEEcCCCC-CcceEE--EcCCCcEE-EEEEcCCCCHHHhc-------C------cEE
Confidence 764322 47888877778877666653 343 234444 35566643 23998777655321 1 123
Q ss_pred ccceeeeEEehhhhHHHHhhccCccccccCCcccCCCCCcccCcchhhhhhccccccCC-CCCceeEEEecccceeeccc
Q 007727 377 PGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLP-PSAKVGFTVMDTWLAYAPVK 455 (591)
Q Consensus 377 ~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~-~~~~~~~~~v~R~~~FsPvK 455 (591)
|+..+.|+-+++.+.|.+ + -| +..|=|--.-|++..+. ...++..+.++..+|+.-|.
T Consensus 172 --NtGiy~f~~~~L~~~L~~----l---~n------------nNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN 230 (460)
T COG1207 172 --NTGIYAFDGAALLRALPK----L---SN------------NNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVN 230 (460)
T ss_pred --eeeEEEEcHHHHHHHHHH----h---cc------------ccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcC
Confidence 999999999988888864 1 11 01123333444444432 12345555677678888887
Q ss_pred cCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCC
Q 007727 456 NNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPK 519 (591)
Q Consensus 456 N~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~p~ 519 (591)
|.-.+ ..++.-+-+.-++-+..+|+.+-+|.+.. -...++.++-+.+.|.
T Consensus 231 ~R~qL-------------a~~e~~~q~r~~~~~m~~GVtl~dP~t~~-i~~dv~ig~DvvI~p~ 280 (460)
T COG1207 231 DRVQL-------------AEAERIMQRRIAEKLMLAGVTLIDPATTY-IRGDVEIGRDVVIEPN 280 (460)
T ss_pred cHHHH-------------HHHHHHHHHHHHHHHHHcCcEEeCCCeEE-EcCcEEECCceEEecC
Confidence 66655 23444444444455556899987776422 2233444555555543
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.15 E-value=0.00053 Score=75.63 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=37.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
.+.+|+||||.||||+.+.||.++|+ .+++++++.++.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~ 45 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL---LGEPMLRFVYRALRP 45 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc---CCCcHHHHHHHHHHh
Confidence 57889999999999998899999998 799999999998754
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.08 E-value=0.0016 Score=71.20 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=105.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||+...||.++|+ .+++++++.+++++.. . -..+|+++. ..+.+.+++.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~----~---------~~i~Ivv~~-~~~~i~~~~~~ 64 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI----S---------DDVHVVLHH-QKERIKEAVLE 64 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHHHHHHHc----C---------CcEEEEECC-CHHHHHHHHHh
Confidence 35689999999999998899999998 7999999999998752 1 135666664 46778888865
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+ ++ .+.+..|. ...+.|.|+....+ +..-+++.+.+-|+++.
T Consensus 65 ~--~~----~v~~~~~~----------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~~ 106 (430)
T PRK14359 65 Y--FP----GVIFHTQD----------------------LENYPGTGGALMGI----------EPKHERVLILNGDMPLV 106 (430)
T ss_pred c--CC----ceEEEEec----------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCccCC
Confidence 3 11 23333221 01233444433321 11257888999999663
Q ss_pred cccchHHHHHHhhcCCcceeeeccC-cccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCcc
Q 007727 300 FKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (591)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~g 378 (591)
++..+-.+.+.+.++.+-+++. .|. ..|.+. . .+|+.. ..+|.....+ .+.. .+..
T Consensus 107 ---~~~~l~~l~~~~~~~~v~~~~~~~~~-~~g~v~-~--d~g~v~-~i~e~~~~~~---------~~~~------~~~~ 163 (430)
T PRK14359 107 ---EKDELEKLLENDADIVMSVFHLADPK-GYGRVV-I--ENGQVK-KIVEQKDANE---------EELK------IKSV 163 (430)
T ss_pred ---CHHHHHHHHhCCCCEEEEEEEcCCCc-cCcEEE-E--cCCeEE-EEEECCCCCc---------cccc------ceEE
Confidence 5566666666677765555442 232 356432 2 356431 1133322110 0110 1124
Q ss_pred ceeeeEEehhhhHHHHh
Q 007727 379 NINQLILELGPYMEELK 395 (591)
Q Consensus 379 Ninn~~~~l~~l~~~l~ 395 (591)
|+..++|+-+.+.+.+.
T Consensus 164 ~~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 164 NAGVYLFDRKLLEEYLP 180 (430)
T ss_pred EeEEEEEEHHHHHHHHH
Confidence 88888899887766544
No 16
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=98.00 E-value=0.00022 Score=74.68 Aligned_cols=177 Identities=17% Similarity=0.205 Sum_probs=106.4
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
.+-.|+||||.||||.- ..||.++|+ .+|+++++.++.+.. ++ .--++|++...-.+...++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~----aG--------i~~I~ii~~~~~~~~~~~~ 67 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLML----AG--------IRDILIISTPQDTPRFQQL 67 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE---CCEEHHHHHHHHHHH----CC--------CCEEEEEecCCchHHHHHH
Confidence 46789999999999974 889999998 789999999998875 22 1234556666656678888
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 007727 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (591)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN 296 (591)
|.....||++ +.+..| -.|.|.|+-+.... +++. +-+++ +..-||
T Consensus 68 l~~g~~~g~~---i~y~~q------------------------~~~~Gta~Al~~a~------~~i~-~~~~~-lv~gD~ 112 (292)
T PRK15480 68 LGDGSQWGLN---LQYKVQ------------------------PSPDGLAQAFIIGE------EFIG-GDDCA-LVLGDN 112 (292)
T ss_pred HcCccccCce---eEEEEC------------------------CCCCCHHHHHHHHH------HHhC-CCCEE-EEECCe
Confidence 8776666653 222111 11567776655422 2332 22455 455788
Q ss_pred ccccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCC
Q 007727 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (591)
Q Consensus 297 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f 376 (591)
++...--..++-.+..++.++.+-+++....++-|++.. +.+|+. +++.|.|. .|. +.
T Consensus 113 i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~--d~~g~v----~~i~EKP~------~p~---------s~- 170 (292)
T PRK15480 113 IFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF--DQNGTA----ISLEEKPL------QPK---------SN- 170 (292)
T ss_pred eeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEE--CCCCcE----EEEEECCC------CCC---------CC-
Confidence 663332235677776767666554444333356676542 334542 33434321 111 11
Q ss_pred ccceeeeEEehh
Q 007727 377 PGNINQLILELG 388 (591)
Q Consensus 377 ~gNinn~~~~l~ 388 (591)
..|+...+|+-+
T Consensus 171 ~a~~GiY~~~~~ 182 (292)
T PRK15480 171 YAVTGLYFYDND 182 (292)
T ss_pred EEEEEEEEEChH
Confidence 248889999865
No 17
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.87 E-value=0.00037 Score=72.76 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=103.0
Q ss_pred EEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
.|+||||.||||.- ..||.++|+ .+++++++.++.+.. ++ .-.++|.|.....+..+++|..
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~----aG--------i~~I~iv~~~~~~~~~~~~lg~ 66 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML----AG--------IRDILIISTPQDTPRFQQLLGD 66 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH----CC--------CCEEEEEecCCcHHHHHHHhcc
Confidence 58899999999964 899999998 789999999998865 22 2245567777777788888876
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
...||++ +.+..| ..|-|-|+-+..... ++.. =+++ +..-||++.
T Consensus 67 g~~~g~~---i~~~~q------------------------~~~~Gta~al~~a~~------~l~~-~~~~-li~gD~i~~ 111 (286)
T TIGR01207 67 GSQWGVN---LSYAVQ------------------------PSPDGLAQAFIIGED------FIGG-DPSA-LVLGDNIFY 111 (286)
T ss_pred ccccCce---EEEEEc------------------------cCCCCHHHHHHHHHH------HhCC-CCEE-EEECCEecc
Confidence 6666653 322222 134566654443221 2222 2344 556798763
Q ss_pred cccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccc
Q 007727 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (591)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gN 379 (591)
...-..++-.+...+.++.+-+.+....++-|++. + +.+|+ | ++..|.|. .|. +. ..|
T Consensus 112 ~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~-~-d~~g~--V--~~i~EKp~------~~~---------s~-~~~ 169 (286)
T TIGR01207 112 GHDLSDLLKRAAARESGATVFAYQVSDPERYGVVE-F-DSNGR--A--ISIEEKPA------QPK---------SN-YAV 169 (286)
T ss_pred ccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEE-E-CCCCe--E--EEEEECCC------CCC---------CC-EEE
Confidence 32213456666666777655544433334567654 2 33454 2 33333321 110 11 248
Q ss_pred eeeeEEehh
Q 007727 380 INQLILELG 388 (591)
Q Consensus 380 inn~~~~l~ 388 (591)
+...+|+-+
T Consensus 170 ~GiYi~~~~ 178 (286)
T TIGR01207 170 TGLYFYDNR 178 (286)
T ss_pred EEEEEEchH
Confidence 888889875
No 18
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.87 E-value=0.00054 Score=73.79 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
++-+|+||||.||||.- +.||.++|+ .++ +++++.++.+.+. + .--++|.|. ...+.+.+
T Consensus 3 ~m~avILAaG~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~~ 66 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCANS----G--------IDTVGVLTQ-YQPLELNN 66 (380)
T ss_pred cEEEEEECCCCCcccchhhcCCccceeee---CCceeehhHHHHHHHhC----C--------CCEEEEEec-CCHHHHHH
Confidence 57889999999999986 789999998 688 8999999998651 2 113566665 46788999
Q ss_pred HHHhCCCCCCCCCc--EEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEE
Q 007727 216 LLESNSYFGMKPTQ--VKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFF 292 (591)
Q Consensus 216 ~l~~~~~FGl~~~~--V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v~ 292 (591)
+|.+...|+++..+ +.+ .| |... .+ +. -.|-|.|+ ++.++ +.+....-+++.|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~i-~~---~~~~-~~-------~~-----~~~~Gta~al~~a~------~~l~~~~~~~~lV~ 123 (380)
T PRK05293 67 HIGIGSPWDLDRINGGVTI-LP---PYSE-SE-------GG-----KWYKGTAHAIYQNI------DYIDQYDPEYVLIL 123 (380)
T ss_pred HHhCCCcccccCCCCCEEE-eC---Cccc-CC-------CC-----cccCCcHHHHHHHH------HHHHhCCCCEEEEe
Confidence 99876667664221 111 01 0000 00 00 12346654 33332 22322233678888
Q ss_pred eCCCccccccchHHHHHHhhcCCcceeeeccC--cccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcC
Q 007727 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (591)
Q Consensus 293 ~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r--~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (591)
+-|+. ...---.++-.+..+++++.+-+... ....+.|++. + +.+|+ + .++.|.+. .+..
T Consensus 124 ~gD~l-~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~-~-d~~g~--V--~~~~eKp~------~~~~----- 185 (380)
T PRK05293 124 SGDHI-YKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMN-T-DENMR--I--VEFEEKPK------NPKS----- 185 (380)
T ss_pred cCCEE-EcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEE-E-CCCCc--E--EEEEeCCC------CCCc-----
Confidence 88983 33222245666667777754433221 1223456543 2 33454 3 44544321 1100
Q ss_pred CCCCCCccceeeeEEehhhhHHHHh
Q 007727 371 TGYSPFPGNINQLILELGPYMEELK 395 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l~ 395 (591)
. ..|+....|+-+.+.+.+.
T Consensus 186 ----~-~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 186 ----N-LASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ----c-eeeeEEEEEcHHHHHHHHH
Confidence 1 2488889999876666554
No 19
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.84 E-value=0.00055 Score=74.75 Aligned_cols=205 Identities=14% Similarity=0.169 Sum_probs=113.4
Q ss_pred hhcceEEEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 007727 137 EAKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (591)
Q Consensus 137 ~l~kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~ 212 (591)
+..++.+|+||||.||||. .+.||.++|+ .++ +++++.++.+... + .--++|.|. ...+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~~----G--------i~~i~iv~~-~~~~~ 65 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVNS----G--------YLRIYVLTQ-YKSHS 65 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceee---CCcceEhHHHHHHHHHC----C--------CCEEEEEec-cCHHH
Confidence 3458899999999999998 7899999998 687 9999999888651 1 113345554 67888
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEE
Q 007727 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (591)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~ 292 (591)
+.++|.+. +++....+.++.. .|.- ... -.-.|-|.|+-.... ++.+....-+++.+.
T Consensus 66 i~~~~~~~--~~~~~~~~~~~~~--~~~~-----------~~~--~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~ 123 (407)
T PRK00844 66 LDRHISQT--WRLSGLLGNYITP--VPAQ-----------QRL--GKRWYLGSADAIYQS-----LNLIEDEDPDYVVVF 123 (407)
T ss_pred HHHHHHhC--cCccccCCCeEEE--CCcc-----------cCC--CCCcccCCHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 99999742 2222111221110 0100 000 011255766544322 223333344788888
Q ss_pred eCCCccccccchHHHHHHhhcCCcceeeec--cCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcC
Q 007727 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAV--PRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (591)
Q Consensus 293 ~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv--~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (591)
+-|+ +...---.++-++..+++++.+-+. +......-|++. + +.+|+. .++.|.+...... ...
T Consensus 124 ~gD~-v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~-~-d~~g~v----~~~~eKp~~~~~~------~~~- 189 (407)
T PRK00844 124 GADH-VYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIE-V-DPDGRI----RGFLEKPADPPGL------PDD- 189 (407)
T ss_pred cCCE-EEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEE-E-CCCCCE----EEEEECCCCcccc------cCC-
Confidence 8898 3332223457777778877655443 222223456543 3 335543 3443433211000 000
Q ss_pred CCCCCCccceeeeEEehhhhHHHHh
Q 007727 371 TGYSPFPGNINQLILELGPYMEELK 395 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l~ 395 (591)
.+. ...|+..+.|+-+.+.+.+.
T Consensus 190 ~~~--~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 190 PDE--ALASMGNYVFTTDALVDALR 212 (407)
T ss_pred CCC--cEEEeEEEEEeHHHHHHHHH
Confidence 001 12488889999887666554
No 20
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.80 E-value=0.00051 Score=68.22 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=53.7
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.||||+ ...||.++|+ .+++++++.++.+.+. + ---++|.|.. ..+.+.++|++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~~----G--------i~~I~iv~~~-~~~~i~~~l~~ 66 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLALN----G--------VEEVFVFCCS-HSDQIKEYIEK 66 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEE---CCEehHHHHHHHHHHC----C--------CCeEEEEeCC-CHHHHHHHHhh
Confidence 6899999999998 5899999998 6899999999988761 2 1235677764 67889999998
Q ss_pred CCCCCCC
Q 007727 220 NSYFGMK 226 (591)
Q Consensus 220 ~~~FGl~ 226 (591)
..++++.
T Consensus 67 ~~~~~~~ 73 (217)
T cd04197 67 SKWSKPK 73 (217)
T ss_pred ccccccc
Confidence 7665543
No 21
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=97.71 E-value=0.001 Score=66.54 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=101.8
Q ss_pred EEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.||||+- +.||.++|+ .++++++..++.+... + --.++|.|+. .++.+.+++.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~~----g--------~~~v~iv~~~-~~~~~~~~l~~ 66 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAKA----G--------VKEIILAVNY-RPEDMVPFLKE 66 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeE---CCcchHHHHHHHHHHC----C--------CcEEEEEeee-CHHHHHHHHhc
Confidence 68899999999964 789999998 6899999999998762 1 1134566654 55778888874
Q ss_pred CC-CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 007727 220 NS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (591)
Q Consensus 220 ~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L 298 (591)
.. .+|+ . ++. . ....|.|.|+-+... .+.+ ...-+-+.+.+-|++
T Consensus 67 ~~~~~~~-----~----------------i~~--~----~~~~~~G~~~al~~a-----~~~~-~~~~~~~lv~~~D~~- 112 (233)
T cd06425 67 YEKKLGI-----K----------------ITF--S----IETEPLGTAGPLALA-----RDLL-GDDDEPFFVLNSDVI- 112 (233)
T ss_pred ccccCCe-----E----------------EEe--c----cCCCCCccHHHHHHH-----HHHh-ccCCCCEEEEeCCEe-
Confidence 31 1221 1 111 0 001245554433222 1222 221122456677763
Q ss_pred ccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecC-CCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCc
Q 007727 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHA-DGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (591)
Q Consensus 299 ~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~-dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~ 377 (591)
...--..++-++..++++..+-+.+......-|.+. + +. +|+ | +++.|-+.. + .. . .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-~-d~~~~~--v--~~~~ekp~~------~---~~-----~--~ 170 (233)
T cd06425 113 CDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVV-H-DENTGR--I--ERFVEKPKV------F---VG-----N--K 170 (233)
T ss_pred eCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEE-E-cCCCCE--E--EEEEECCCC------C---CC-----C--E
Confidence 332224678888888998887777654444567554 3 22 343 3 566443211 1 01 1 2
Q ss_pred cceeeeEEehhhh
Q 007727 378 GNINQLILELGPY 390 (591)
Q Consensus 378 gNinn~~~~l~~l 390 (591)
.|+..++|+-+.+
T Consensus 171 ~~~Giyi~~~~~l 183 (233)
T cd06425 171 INAGIYILNPSVL 183 (233)
T ss_pred EEEEEEEECHHHH
Confidence 4889999997654
No 22
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.70 E-value=0.00075 Score=67.90 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=52.2
Q ss_pred EEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
-+|+||||.||||+- ..||.++|+ .++++++..++.+.+ ++ .-.++|.++....+...++|.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv---~~~pli~~~l~~l~~----~g--------i~~i~vv~~~~~~~~~~~~l~ 66 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV---YDKPMIYYPLSTLML----AG--------IREILIISTPEDLPLFKELLG 66 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE---CCEEhHHHHHHHHHH----CC--------CCEEEEEeCcchHHHHHHHHh
Confidence 468999999999975 789999998 589999999998864 12 225667777666677888887
Q ss_pred hCCCCC
Q 007727 219 SNSYFG 224 (591)
Q Consensus 219 ~~~~FG 224 (591)
....+|
T Consensus 67 ~~~~~~ 72 (240)
T cd02538 67 DGSDLG 72 (240)
T ss_pred cccccC
Confidence 655444
No 23
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.66 E-value=0.00097 Score=71.60 Aligned_cols=145 Identities=8% Similarity=0.060 Sum_probs=87.9
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
++.+|+||||.||||. .+.||.++|+ .++ ++++++++.+.+. + .--++|.++..-.+.+.+
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~~----G--------i~~I~iv~~~~~~~~I~~ 66 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVNA----G--------IRNVFIFFKNKERQSLFD 66 (369)
T ss_pred cEEEEEECCCCCccccccccCCccccccc---CCeeeEEEEEhhhhhcc----C--------CCEEEEEeCCCcHHHHHH
Confidence 5678999999999996 4899999998 799 8999999998762 1 123556666544458999
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCC
Q 007727 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (591)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vD 295 (591)
+|.+...||++..+ ..+..+. . .+ ..|-|.|+.+..... .+.+...+-+++.+.+-|
T Consensus 67 ~l~~~~~~~~~~~~------~~~~~~~-------~--~e-----~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnGD 123 (369)
T TIGR02092 67 HLGSGREWDLHRKR------DGLFVFP-------Y--ND-----RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNSH 123 (369)
T ss_pred HHhCCCCCCccccc------CcEEEEe-------c--cC-----CCCcccChHHHHHHH---HHHHHhCCCCEEEEECCC
Confidence 99876667764211 1111110 1 11 122333444322211 222222234788899999
Q ss_pred CccccccchHHHHHHhhcCCcceeeecc
Q 007727 296 NGLLFKAIPASLGVSATKQYHVNSLAVP 323 (591)
Q Consensus 296 N~L~~~~Dp~~lG~~~~~~~~~~~kvv~ 323 (591)
+ +...---.++-++.++++++.+-+.+
T Consensus 124 ~-l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 124 M-VCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred E-EEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 7 44332234567777778887555433
No 24
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.65 E-value=0.001 Score=68.82 Aligned_cols=195 Identities=18% Similarity=0.156 Sum_probs=110.0
Q ss_pred EEEEEcCCcCccCC----ccCcccccccccCCC-cchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 142 AFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 142 avv~LaGG~GTRLG----~~~pK~~lpv~~~~~-~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
-+|+||||.||||. ...||.++|+ .+ +|++|..++++..+. + .-.++|.|+...++.+.++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l---~g~~~li~~~l~~l~~~~---~--------~~~i~vvt~~~~~~~v~~~ 67 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKL---FGDKSLLQQTLDRLKGLV---P--------PDRILVVTNEEYRFLVREQ 67 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEc---CCCCcHHHHHHHHHhcCC---C--------CCcEEEEechHHHHHHHHH
Confidence 46899999999995 5789999998 45 999999999886521 0 2377889987767777778
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHH-cCceEEEEEeC
Q 007727 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHD-AGLKWVLFFQD 294 (591)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~-~G~eyi~v~~v 294 (591)
+++ .+ . .+ +++.++. |-|.|+ +..++. .+.+ .+-+++.|.+.
T Consensus 68 l~~---~~-~--~~----------------~ii~ep~--------~~gTa~ai~~a~~------~~~~~~~~~~vlVl~~ 111 (274)
T cd02509 68 LPE---GL-P--EE----------------NIILEPE--------GRNTAPAIALAAL------YLAKRDPDAVLLVLPS 111 (274)
T ss_pred Hhh---cC-C--Cc----------------eEEECCC--------CCCcHHHHHHHHH------HHHhcCCCCeEEEecc
Confidence 765 11 1 11 1222111 123333 333321 1222 23578888888
Q ss_pred CCccccccch-HHHHHH---hhcCCcceeeeccCcccCccceEEEEecCCC-ceeEEEEeccCccHHHHhcC-CCCCCCC
Q 007727 295 TNGLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHADG-RSMVINVEYNQLDPLLRATG-FPDGDVN 368 (591)
Q Consensus 295 DN~L~~~~Dp-~~lG~~---~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG-~~~v~~VEYsel~~~l~~~~-~~~g~l~ 368 (591)
|.++....|. ..+--+ .+.+..+.+-+.+..|...-|.+..-...+| -+.| ..+.|.|..-.++. ..+|
T Consensus 112 D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V--~~f~EKP~~~~a~~~~~~g--- 186 (274)
T cd02509 112 DHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRV--KRFVEKPDLETAKEYLESG--- 186 (274)
T ss_pred hhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEE--eEEEECcChHHHHHHhhcC---
Confidence 8855321111 112111 2256667776666666666776643111112 1233 44555544322111 1111
Q ss_pred cCCCCCCCccceeeeEEehhhhHHHHhhc
Q 007727 369 CETGYSPFPGNINQLILELGPYMEELKKT 397 (591)
Q Consensus 369 ~~~~f~~f~gNinn~~~~l~~l~~~l~~~ 397 (591)
-.++ |+..+.|+.+.+.+.+++.
T Consensus 187 ----~~~w--NsGiyi~~~~~l~~~l~~~ 209 (274)
T cd02509 187 ----NYLW--NSGIFLFRAKTFLEELKKH 209 (274)
T ss_pred ----CeEE--ECceeeeeHHHHHHHHHHH
Confidence 1133 9999999999888888763
No 25
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.64 E-value=0.0017 Score=64.81 Aligned_cols=69 Identities=29% Similarity=0.377 Sum_probs=53.1
Q ss_pred eEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+.+|+||||.||||+ ...||.++|+ .|+++++..++.+.+. + .-.++|.|+. ..+.+.+++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~~----~--------~~~i~vv~~~-~~~~~~~~~ 64 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLREA----G--------IEDIGIVVGP-TGEEIKEAL 64 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE---CCcchHHHHHHHHHHC----C--------CCEEEEEcCC-CHHHHHHHh
Confidence 357899999999996 5799999998 6899999999988641 2 1245777777 777888888
Q ss_pred HhCCCCCC
Q 007727 218 ESNSYFGM 225 (591)
Q Consensus 218 ~~~~~FGl 225 (591)
++...+|+
T Consensus 65 ~~~~~~~~ 72 (236)
T cd04189 65 GDGSRFGV 72 (236)
T ss_pred cchhhcCC
Confidence 87554543
No 26
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.61 E-value=0.0023 Score=62.79 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=98.2
Q ss_pred EEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l~ 218 (591)
+|+||||.|+||+- ..||.++|+ .|+++++..++.+... .+. ++|.| ....+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~~-------------g~~~v~vv~-~~~~~~i~~~~~ 63 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLARQ-------------GISRIVLSV-GYLAEQIEEYFG 63 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE---CCcchHHHHHHHHHHC-------------CCCEEEEEc-ccCHHHHHHHHc
Confidence 47899999999964 589999998 6899999999988651 233 45555 455677888887
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCc
Q 007727 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (591)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~ 297 (591)
....+|. ++.+ .. + ..+-|.++ ++.++. .+ +-+++.+.+.|++
T Consensus 64 ~~~~~~~---~~~~--------~~----------~------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D~~ 107 (223)
T cd06915 64 DGYRGGI---RIYY--------VI----------E------PEPLGTGGAIKNALP------KL---PEDQFLVLNGDTY 107 (223)
T ss_pred CccccCc---eEEE--------EE----------C------CCCCcchHHHHHHHh------hc---CCCCEEEEECCcc
Confidence 5332221 1111 10 0 12344443 444432 22 2367788888986
Q ss_pred cccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCc
Q 007727 298 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (591)
Q Consensus 298 L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~ 377 (591)
+....+ .++-.+.+.+.++.+-+.+......-|.+ .+ +.+|+. +++.+-+.. . . +. -
T Consensus 108 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~v-~~-d~~~~v----~~~~ek~~~---------~-~-----~~-~ 164 (223)
T cd06915 108 FDVDLL-ALLAALRASGADATMALRRVPDASRYGNV-TV-DGDGRV----IAFVEKGPG---------A-A-----PG-L 164 (223)
T ss_pred cCCCHH-HHHHHHHhCCCcEEEEEEECCCCCcceeE-EE-CCCCeE----EEEEeCCCC---------C-C-----CC-c
Confidence 533332 23445556677777766653223444543 33 334542 344332110 0 0 01 2
Q ss_pred cceeeeEEehhhhH
Q 007727 378 GNINQLILELGPYM 391 (591)
Q Consensus 378 gNinn~~~~l~~l~ 391 (591)
.|++..+|+-+.+.
T Consensus 165 ~~~Giy~~~~~~l~ 178 (223)
T cd06915 165 INGGVYLLRKEILA 178 (223)
T ss_pred EEEEEEEECHHHHh
Confidence 38888999987543
No 27
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.60 E-value=0.00049 Score=69.11 Aligned_cols=184 Identities=19% Similarity=0.208 Sum_probs=109.3
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
.|+||||.||||. .+.||.++|+ .++ +++++.++++.. ++ .--+++.+.....+...++++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~----~g--------~~~ii~V~~~~~~~~i~~~~~ 66 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLAN----AG--------IKEIIVVVNGYKEEQIEEHLG 66 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHH----TT--------CSEEEEEEETTTHHHHHHHHT
T ss_pred EEEECCCCCccCchhhhcccccccee---cCCCcchhhhhhhhcc----cC--------CceEEEEEeeccccccccccc
Confidence 4677999999996 6889999998 577 999999999876 22 112356666667788999999
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcC-ceEEEEEeCCCc
Q 007727 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG-LKWVLFFQDTNG 297 (591)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G-~eyi~v~~vDN~ 297 (591)
+...+++ +|.+..|+ .|.|.|+..... .+.+.... -+++.+.+.|+
T Consensus 67 ~~~~~~~---~i~~i~~~------------------------~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD~- 113 (248)
T PF00483_consen 67 SGYKFGV---KIEYIVQP------------------------EPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGDI- 113 (248)
T ss_dssp TSGGGTE---EEEEEEES------------------------SSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTEE-
T ss_pred ccccccc---cceeeecc------------------------cccchhHHHHHH-----HHHhhhccccceEEEEeccc-
Confidence 8765551 12221110 111555544432 22222222 35688999898
Q ss_pred cccccchHHHHHHhhcCCcc--eeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCC
Q 007727 298 LLFKAIPASLGVSATKQYHV--NSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (591)
Q Consensus 298 L~~~~Dp~~lG~~~~~~~~~--~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~ 375 (591)
+....-..++-.+..++.++ .+..++......-|.+. + +.+|+ | ++.-|.|..... . .
T Consensus 114 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-~-d~~~~--V--~~~~EKP~~~~~--------~-----~- 173 (248)
T PF00483_consen 114 IFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVE-V-DEDGR--V--IRIVEKPDNPNA--------S-----N- 173 (248)
T ss_dssp EESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEE-E-ETTSE--E--EEEEESCSSHSH--------S-----S-
T ss_pred cccchhhhHHHhhhccccccccccccccccccccceeee-e-cccee--E--EEEeccCccccc--------c-----e-
Confidence 44443356788888888854 44444444445556543 3 34453 3 444333221100 0 1
Q ss_pred CccceeeeEEehhhhHHHHh
Q 007727 376 FPGNINQLILELGPYMEELK 395 (591)
Q Consensus 376 f~gNinn~~~~l~~l~~~l~ 395 (591)
..|+...+|+-+.+..+++
T Consensus 174 -~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 174 -LINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp -EEEEEEEEEETHHHHHHHH
T ss_pred -eccCceEEEcchHHHHHhh
Confidence 2488889999886666543
No 28
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.59 E-value=0.0034 Score=70.03 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=105.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
.++.|+||||.||||+.+.||.++|+ .+++++++.++++.+. + .-.++|.++.. .+.+.++++.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~~----g--------~~~iivvv~~~-~~~i~~~~~~ 67 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAGL----A--------PQHLVVVVGHD-RERVAPAVAE 67 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceecee---CCccHHHHHHHHHHhc----C--------CCcEEEEECCC-HHHHHHHhhc
Confidence 56889999999999998889999998 6999999999998752 1 23667777654 4567777754
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L 298 (591)
... .+.+..| ..|.|.|+ ++.++. .+....-+++.|.+.|+++
T Consensus 68 ~~~------~~~~~~~------------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 68 LAP------EVDIAVQ------------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred cCC------ccEEEeC------------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCCeec
Confidence 210 1111111 11334333 444443 2222234678888999976
Q ss_pred ccccch-HHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCc
Q 007727 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (591)
Q Consensus 299 ~~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~ 377 (591)
....|. .++-.+...+.++..-+.+......-|.+.. +.+|+.. ..+|....+.. +.. .. .
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~--~~~g~V~-~~~EKp~~~~~---------~~~----~~--~ 173 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR--DQDGEVT-AIVEQKDATPS---------QRA----IR--E 173 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE--CCCCCEE-EEEECCCCCHH---------Hhh----cc--e
Confidence 543222 2344455556555444333333334564432 4466531 12444332111 000 01 2
Q ss_pred cceeeeEEehhhhHHHHh
Q 007727 378 GNINQLILELGPYMEELK 395 (591)
Q Consensus 378 gNinn~~~~l~~l~~~l~ 395 (591)
.|+...+|+-+.|.+.++
T Consensus 174 ~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 174 VNSGVYAFDAAVLRSALA 191 (482)
T ss_pred EEEEEEEEEHHHHHHHHH
Confidence 388889999877666654
No 29
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.58 E-value=0.0016 Score=71.60 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=49.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++..|+||||.||||+...||.++|+ .+++++++.++.+.+. + .-.++|.++. .++.+.+++.+
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 68 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPV---AGRPMLAHVLAAAASL----G--------PSRVAVVVGP-GAEAVAAAAAK 68 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEE---CCchHHHHHHHHHHhC----C--------CCcEEEEECC-CHHHHHHHhhc
Confidence 57889999999999997789999998 7899999999998652 1 1245566655 45667777653
No 30
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.58 E-value=0.015 Score=63.89 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=48.4
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
-+|+||||.||||+.+.||.++|+ .+++++++.++.+.+. + .-.++|.++.. .+.+.+++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~~----g--------~~~iiiv~~~~-~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVIDAARAL----G--------PQKIHVVYGHG-AEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee---CCccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhcC
Confidence 468999999999998889999998 7899999999988651 1 22456777754 5667777764
No 31
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.57 E-value=0.0016 Score=64.43 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=50.3
Q ss_pred EEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
.|+||||.||||+- ..||.++|+ .++++++..++.+.+. .+.-+++......+.+.+++..
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAAA-------------GIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHHC-------------CCCEEEEEccCCHHHHHHHHhc
Confidence 48899999999964 799999998 6899999999998752 2343444556678889999886
Q ss_pred CCCCC
Q 007727 220 NSYFG 224 (591)
Q Consensus 220 ~~~FG 224 (591)
.++|
T Consensus 66 -~~~~ 69 (221)
T cd06422 66 -SRFG 69 (221)
T ss_pred -ccCC
Confidence 4444
No 32
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.57 E-value=0.0047 Score=61.16 Aligned_cols=180 Identities=19% Similarity=0.165 Sum_probs=100.2
Q ss_pred EEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 007727 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (591)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~ 222 (591)
+|+||||.||||+...||.++|+ .|++++++.++.+... + .-.++|.|+.. ++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~~----~--------i~~i~iv~~~~-~~~i~~~~~~--- 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARAL----G--------PDRIVVVVGHG-AEQVKKALAN--- 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee---CCccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhCC---
Confidence 47899999999997789999998 6899999999888651 1 22456666655 6777777764
Q ss_pred CCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCccccc
Q 007727 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (591)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~ 301 (591)
++ +.++.|. .+.|.++ ++.++. .+ +++.+++.+.+-|+++...
T Consensus 62 ~~-----~~~~~~~------------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 62 PN-----VEFVLQE------------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred CC-----cEEEECC------------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccccCH
Confidence 11 2222220 0123333 333332 22 2246789999999975432
Q ss_pred cch-HHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccce
Q 007727 302 AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (591)
Q Consensus 302 ~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gNi 380 (591)
-|. .++-.+.+.++++++-+++......-|.+. . +.+|+.. ..+|...+.+. + . . ....|+
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~~v~-~~~ek~~~~~~---~-----~------~-~~~~~~ 167 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDPTGYGRII-R-DGNGKVL-RIVEEKDATEE---E-----K------A-IREVNA 167 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEE-E-cCCCCEE-EEEECCCCChH---H-----H------h-hceEEe
Confidence 211 123444455667666555432112345432 2 3346531 11332222100 0 0 0 013488
Q ss_pred eeeEEehhhhHHHHh
Q 007727 381 NQLILELGPYMEELK 395 (591)
Q Consensus 381 nn~~~~l~~l~~~l~ 395 (591)
+..+|+-+.+.+.++
T Consensus 168 giy~~~~~~~~~~l~ 182 (229)
T cd02540 168 GIYAFDAEFLFEALP 182 (229)
T ss_pred EEEEEEHHHHHHHHH
Confidence 888999877666654
No 33
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.56 E-value=0.0014 Score=64.22 Aligned_cols=139 Identities=18% Similarity=0.145 Sum_probs=85.3
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.||||+ ...||.++|+ .+++++++.++.+... + --.++|.|.. ..+.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~~----g--------~~~i~vv~~~-~~~~i~~~~~~ 64 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLARA----G--------IDEIILVVGY-LGEQIEEYFGD 64 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHHC----C--------CCEEEEEecc-CHHHHHHHHcC
Confidence 3789999999997 3689999998 7899999999998652 1 1235666665 45677888776
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
...+|. .|.+..| ..|.|.++-..... +.+ .-+++.+.+-|++.
T Consensus 65 ~~~~~~---~i~~~~~------------------------~~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~~- 108 (217)
T cd04181 65 GSKFGV---NIEYVVQ------------------------EEPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVLT- 108 (217)
T ss_pred hhhcCc---eEEEEeC------------------------CCCCccHHHHHHhh-----hhc---CCCCEEEEECCeec-
Confidence 543332 1222111 01345444333221 222 45788888889843
Q ss_pred cccchHHHHHHhhcCCcceeeeccCcccCccceE
Q 007727 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (591)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i 333 (591)
..-.-.++-++..+++++.+-+.+......-|.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (217)
T cd04181 109 DLDLSELLRFHREKGADATIAVKEVEDPSRYGVV 142 (217)
T ss_pred CcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEE
Confidence 3322335567777888877766654434444644
No 34
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.55 E-value=0.0024 Score=70.39 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=86.6
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
++.+|+||||.||||. .+.||.++|+ .++ +++++.++++.. ++ .-.++|.|+ ...+.+++
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~----~G--------i~~vivv~~-~~~~~i~~ 66 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCIN----SG--------INKIYVLTQ-FNSASLNR 66 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHH----CC--------CCEEEEEec-CCHHHHHH
Confidence 6788999999999997 4899999998 688 999999998865 22 224566666 47788999
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCC
Q 007727 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (591)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vD 295 (591)
+|.+..+|+... .+.+..+.. .....-...+-|.|+-..... +.+....-+++.|.+-|
T Consensus 67 ~l~~~~~~~~~~-------~g~~~i~~~---------~~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 67 HISQTYNFDGFS-------GGFVEVLAA---------QQTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGD 125 (429)
T ss_pred HHhcCcCccccC-------CCEEEEeCC---------cccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCC
Confidence 997643222100 010111100 000000012257766544322 22333334678888889
Q ss_pred Cccccccc-hHHHHHHhhcCCcceeeecc
Q 007727 296 NGLLFKAI-PASLGVSATKQYHVNSLAVP 323 (591)
Q Consensus 296 N~L~~~~D-p~~lG~~~~~~~~~~~kvv~ 323 (591)
+ +.. .| -.++-++.+.++++.+-+.+
T Consensus 126 ~-l~~-~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 126 Q-LYR-MDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred E-EEe-CCHHHHHHHHHHcCCCEEEEEEe
Confidence 8 443 23 24567777778887665543
No 35
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.51 E-value=0.004 Score=68.53 Aligned_cols=208 Identities=12% Similarity=0.121 Sum_probs=115.1
Q ss_pred hhcceEEEEEcCCcCccCCc---cCcccccccccCCCcc-hHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 007727 137 EAKNAAFVLVAGGLGERLGY---NGIKVALPAETTTGTC-FLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (591)
Q Consensus 137 ~l~kvavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s-~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~ 212 (591)
+-.++.+|+||||.||||.- ..||.++|+ .+++ ++++.++++.+ ++ .-.++|.|. ...+.
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~----~G--------i~~i~vv~~-~~~~~ 75 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCIN----SG--------IRRIGVLTQ-YKAHS 75 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHH----CC--------CCeEEEEec-CCHHH
Confidence 33578999999999999975 799999998 6886 99999998876 22 124566666 56788
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEE
Q 007727 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (591)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~ 292 (591)
+.++|.+. +++.+.++. ..+.. +.+.......-.|-|.|+-.... ++.+....-+++.|.
T Consensus 76 i~~~~~~~--~~~~~~~~~----~~i~i---------~~~~~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lVl 135 (425)
T PRK00725 76 LIRHIQRG--WSFFREELG----EFVDL---------LPAQQRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVIL 135 (425)
T ss_pred HHHHHHhh--hcccccCCC----CeEEE---------eCCcccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 88888753 232111100 00000 10011111122456776644332 223333334688888
Q ss_pred eCCCccccccchHHHHHHhhcCCcceeeeccC--cccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcC
Q 007727 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (591)
Q Consensus 293 ~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r--~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (591)
+-|+ +....--.++-++..+++++.+-+... .....-|++. + +.+|+. +++.|.+..... ....
T Consensus 136 ~gD~-l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~-~-d~~~~V----~~~~EKp~~~~~-------~~~~ 201 (425)
T PRK00725 136 AGDH-IYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMA-V-DENDRI----TAFVEKPANPPA-------MPGD 201 (425)
T ss_pred cCCe-EeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEE-E-CCCCCE----EEEEECCCCccc-------cccC
Confidence 8898 433222245677778888876655332 2223446543 3 334542 444443221000 0000
Q ss_pred CCCCCCccceeeeEEehhhhHHHHhh
Q 007727 371 TGYSPFPGNINQLILELGPYMEELKK 396 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l~~ 396 (591)
.. .+..|+....|+-+.+.+.|.+
T Consensus 202 ~~--~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 202 PD--KSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred cc--ceEEEeeEEEEeHHHHHHHHHH
Confidence 00 1134899999998877666643
No 36
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.49 E-value=0.003 Score=69.56 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=47.9
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+++|+||||.|||||.+.||.++|+ .+++++++.++.+.+. + ....+|.+.. ..+.+.+++++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~~----g--------~~~iivvv~~-~~~~i~~~~~~ 64 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEEL----K--------PDRRLVIVGH-QAEEVEQSLAH 64 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHhC----C--------CCeEEEEECC-CHHHHHHHhcc
Confidence 6789999999999998889999998 7899999999988752 1 2345556654 34456666653
No 37
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=97.47 E-value=0.0021 Score=65.37 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=89.1
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l~ 218 (591)
+|+||||.||||. ...||.++|+ .++++++..++.+... .+. ++|.++ ...+.+.+|++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~~-------------gi~~i~iv~~-~~~~~i~~~~~ 63 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSHY-------------GHNDFILCLG-YKGHVIKEYFL 63 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHhC-------------CCceEEEECC-CCHHHHHHHHH
Confidence 4789999999996 4789999998 7899998877777541 233 444444 56788999998
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCC--CCCcc----ccccCCCch-hhHHHhhcChHHHHHHcCceEEEE
Q 007727 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK--NKYRI----QTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLF 291 (591)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~--~~~~i----~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v 291 (591)
+...+|. ++.+-.| ++++..... .++.+ ...|-|.|+ ++.++. .+ ..+ +++.+
T Consensus 64 ~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~------~~-~~~-~~~lv 123 (253)
T cd02524 64 NYFLHNS---DVTIDLG---------TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR------YL-GDD-ETFML 123 (253)
T ss_pred hhhhhcC---ceeEeec---------ccceeeecccccccceeecccCcccccHHHHHHHHH------hc-CCC-CeEEE
Confidence 8654442 2222111 111111000 01111 122455554 333321 11 111 78889
Q ss_pred EeCCCccccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCc
Q 007727 292 FQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (591)
Q Consensus 292 ~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~ 342 (591)
.+-|++..... -.++-++...++++...++. +....|++ .+ ..+|+
T Consensus 124 ~~gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~--~~~~~g~v-~~-d~~g~ 169 (253)
T cd02524 124 TYGDGVSDVNI-NALIEFHRSHGKLATVTAVH--PPGRFGEL-DL-DDDGQ 169 (253)
T ss_pred EcCCEEECCCH-HHHHHHHHHcCCCEEEEEec--CCCcccEE-EE-CCCCC
Confidence 99998544444 34556667778877665543 33445653 33 33454
No 38
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.46 E-value=0.0018 Score=71.53 Aligned_cols=216 Identities=15% Similarity=0.172 Sum_probs=117.3
Q ss_pred cceEEEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHH
Q 007727 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 214 (591)
Q Consensus 139 ~kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~ 214 (591)
.++.+|+||||.||||. ...||.++|+ .++ +++++.++.+.. ++ .=-++|.|. ...+...
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~----~G--------i~~i~iv~~-~~~~~i~ 65 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCIN----SG--------INKIYVLTQ-FNSASLN 65 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEe---CCcceEehHHHHHHHh----CC--------CCEEEEEec-cCHHHHH
Confidence 36788999999999997 5899999998 565 999999988865 12 112355554 5778899
Q ss_pred HHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeC
Q 007727 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (591)
Q Consensus 215 ~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~v 294 (591)
++|++..+|+... -+.++.+..+.. . .+. .....|-|.|+....... .+++...++-+++.+.+-
T Consensus 66 ~~l~~~~~~~~~~----~~~~~~~~i~~~------~--q~~-~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~g 130 (436)
T PLN02241 66 RHLSRAYNFGNGG----NFGDGFVEVLAA------T--QTP-GEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSG 130 (436)
T ss_pred HHHhccCCCCCCc----ccCCCCEEEcCC------c--ccC-CCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecC
Confidence 9998543344211 011111111100 0 000 011257888776544322 233222123578889998
Q ss_pred CCccccccch-HHHHHHhhcCCcceeeecc--CcccCccceEEEEecCCCceeEEEEeccCccHHHH--hcCCCCCCC--
Q 007727 295 TNGLLFKAIP-ASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLR--ATGFPDGDV-- 367 (591)
Q Consensus 295 DN~L~~~~Dp-~~lG~~~~~~~~~~~kvv~--r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~--~~~~~~g~l-- 367 (591)
|+ +.. .|. .++-++.++++++..-+.+ +.....-|++.. ..+|+ + ++|.|.+.... ..+.+ ..+
T Consensus 131 D~-v~~-~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~--d~~~~--v--~~~~Ekp~~~~~~~~~~~-~~~~~ 201 (436)
T PLN02241 131 DH-LYR-MDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI--DDTGR--I--IEFSEKPKGDELKAMQVD-TTVLG 201 (436)
T ss_pred Ce-EEc-cCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE--CCCCC--E--EEEEECCCCccccccccc-ccccc
Confidence 98 433 343 4577777888876544332 222355676543 33454 3 66766542210 00000 000
Q ss_pred -C--cCCCCCCCccceeeeEEehhhhHHHHh
Q 007727 368 -N--CETGYSPFPGNINQLILELGPYMEELK 395 (591)
Q Consensus 368 -~--~~~~f~~f~gNinn~~~~l~~l~~~l~ 395 (591)
. +.+.. ....|+....|+-+.+..+++
T Consensus 202 ~~~~~~~~~-~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 202 LSPEEAKEK-PYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred ccccccccc-ceEEEeEEEEEEHHHHHHHHH
Confidence 0 00000 113488888999877666654
No 39
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.42 E-value=0.0056 Score=61.58 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=99.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++++|+||||.++||+ +|.++|+ .|++++++.++++... .+.-+++.+. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~-------------~i~~ivvv~~--~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA-------------GADRVVVATD--DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc-------------CCCeEEEECC--cHHHHHHHHH
Confidence 5788999999999995 7999998 7999999999998752 1222233332 4677777764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
. |. ++ +... . ..+.|.+.+..++. .+...+-+++.+.+.|+++.
T Consensus 61 ~---~~---~v----------~~~~---------~-----~~~~gt~~~~~~~~------~~~~~~~~~vlv~~~D~Pli 104 (245)
T PRK05450 61 F---GG---EV----------VMTS---------P-----DHPSGTDRIAEAAA------KLGLADDDIVVNVQGDEPLI 104 (245)
T ss_pred c---CC---EE----------EECC---------C-----cCCCchHHHHHHHH------hcCCCCCCEEEEecCCCCCC
Confidence 2 21 11 1100 0 11334444443332 22112346788889999876
Q ss_pred cccch-HHHHHHhhcCCcceeeeccC-c----cc-CccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCC
Q 007727 300 FKAIP-ASLGVSATKQYHVNSLAVPR-K----AK-EAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 372 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r-~----~~-e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~ 372 (591)
..-+. .++-.+..++.++..-++++ . .. +..| ++ + +.+|+. ++..+.+.. +..+....+.
T Consensus 105 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~-~-d~~g~v----~~~~e~~~~------~~~~~~~~~~ 171 (245)
T PRK05450 105 PPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVK-VV-L-DADGRA----LYFSRAPIP------YGRDAFADSA 171 (245)
T ss_pred CHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCE-EE-e-CCCCcE----EEecCCCCC------CCCCcccccc
Confidence 43322 34444444556766665554 1 22 2244 33 2 345653 445554311 0001000000
Q ss_pred CCCCccceeeeEEehhhhHHHH
Q 007727 373 YSPFPGNINQLILELGPYMEEL 394 (591)
Q Consensus 373 f~~f~gNinn~~~~l~~l~~~l 394 (591)
....-.|+....|+-+.+..+.
T Consensus 172 ~~~~~~~~Giy~~~~~~l~~~~ 193 (245)
T PRK05450 172 PTPVYRHIGIYAYRRGFLRRFV 193 (245)
T ss_pred CccccEEEEEEecCHHHHHHHH
Confidence 0011349999999987655544
No 40
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.41 E-value=0.0021 Score=63.38 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=80.1
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~~~T~~~l~ 218 (591)
+|+||||.|+||+ ...||.++|+ .|+++++..++++... .+ .++|.++. ..+.+.+++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~~-------------~~~~iivv~~~-~~~~i~~~~~ 63 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIAQ-------------GFRNFYISVNY-LAEMIEDYFG 63 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE---CCcchHHHHHHHHHHC-------------CCcEEEEECcc-CHHHHHHHHC
Confidence 5899999999996 3789999998 7899999999998752 22 23455554 4667778877
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 007727 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (591)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L 298 (591)
+...+|+ ++.+. . ++ .|.|-|+....+. +..-+.+.+.+.|+..
T Consensus 64 ~~~~~~~---~i~~~----------------~--~~------~~~g~~~~l~~~~---------~~~~~~~lv~~~D~i~ 107 (220)
T cd06426 64 DGSKFGV---NISYV----------------R--ED------KPLGTAGALSLLP---------EKPTDPFLVMNGDILT 107 (220)
T ss_pred CccccCc---cEEEE----------------E--CC------CCCcchHHHHHHH---------hhCCCCEEEEcCCEee
Confidence 5432332 12111 0 10 1234455443322 2224677788888733
Q ss_pred ccccchHHHHHHhhcCCcceeeeccCcccCccc
Q 007727 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIG 331 (591)
Q Consensus 299 ~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG 331 (591)
..... .++-.+...+.++.+-+.+..+....|
T Consensus 108 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g 139 (220)
T cd06426 108 NLNYE-HLLDFHKENNADATVCVREYEVQVPYG 139 (220)
T ss_pred ccCHH-HHHHHHHhcCCCEEEEEEEcCCCCcce
Confidence 22333 355566667777766555543443444
No 41
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.41 E-value=0.002 Score=72.05 Aligned_cols=146 Identities=20% Similarity=0.210 Sum_probs=85.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||+...||.++|+ .+++++++.++++.+. + --.++|.+.. ..+.+.++|+.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 70 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAVKAARDL----G--------ARKIVVVTGH-GAEQVEAALQG 70 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHHHHHHhC----C--------CCeEEEEeCC-CHHHHHHHhcc
Confidence 67889999999999998789999998 6899999999988651 1 1235555554 45667777642
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchh-hHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i-~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L 298 (591)
. .+.+..| . .|.|-|+- +.++ +.+ ...-+.+.+.+-|+++
T Consensus 71 ~--------~i~~v~~------------------~------~~~Gt~~al~~~~------~~l-~~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 71 S--------GVAFARQ------------------E------QQLGTGDAFLSGA------SAL-TEGDADILVLYGDTPL 111 (481)
T ss_pred C--------CcEEecC------------------C------CcCCcHHHHHHHH------HHh-hCCCCcEEEEeCCeec
Confidence 1 1222111 0 13344443 3332 222 2222235678889976
Q ss_pred ccccch-HHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCc
Q 007727 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (591)
Q Consensus 299 ~~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~ 342 (591)
....+. .++-.+.++++++.+-+.+.....+.|++.. +.+|+
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~--d~~g~ 154 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVR--GADGA 154 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEE--CCCCC
Confidence 544333 3466666777776554433322334575532 34564
No 42
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.39 E-value=0.0049 Score=67.85 Aligned_cols=176 Identities=16% Similarity=0.112 Sum_probs=102.3
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~ 221 (591)
.+|+||||.||||+...||.++|+ .+++++++.++.+... . -.++|.|+.. .+.+.+++..
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~~----~---------~~i~vv~~~~-~~~i~~~~~~-- 62 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI---SGKPMINWVIDTAKKV----A---------QKVGVVLGHE-AELVKKLLPE-- 62 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE---CCeeHHHHHHHHHHhc----C---------CcEEEEeCCC-HHHHHHhccc--
Confidence 468999999999998899999998 6899999999987752 1 1345555543 3455555431
Q ss_pred CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 007727 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (591)
Q Consensus 222 ~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~ 300 (591)
.+.++.|+ .|.|.++ ++.++. .+ . .-+++++.+-|+++..
T Consensus 63 -------~~~~~~~~------------------------~~~g~~~ai~~a~~------~l-~-~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 63 -------WVKIFLQE------------------------EQLGTAHAVMCARD------FI-E-PGDDLLILYGDVPLIS 103 (448)
T ss_pred -------ccEEEecC------------------------CCCChHHHHHHHHH------hc-C-cCCeEEEEeCCcccCC
Confidence 11222121 1223333 333332 12 1 1368899999997654
Q ss_pred ccc-hHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccc
Q 007727 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (591)
Q Consensus 301 ~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gN 379 (591)
..| -.++-++.+.++++...+++......-|.+. . . +|+... +|....+... . . .+..|
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~-~-d-~g~v~~--~e~~~~~~~~----------~----~-~~~~~ 163 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDPTGYGRII-R-D-GGKYRI--VEDKDAPEEE----------K----K-IKEIN 163 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEE-E-c-CCeEEE--EECCCCChHH----------h----c-CcEEE
Confidence 444 2356666677888776665533233456543 2 2 565433 5643221110 0 0 11348
Q ss_pred eeeeEEehhhhHHHHh
Q 007727 380 INQLILELGPYMEELK 395 (591)
Q Consensus 380 inn~~~~l~~l~~~l~ 395 (591)
+...+|+-+.+.+.+.
T Consensus 164 ~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 164 TGIYVFSGDFLLEVLP 179 (448)
T ss_pred eEEEEEEHHHHHHHHH
Confidence 9999999876666554
No 43
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.38 E-value=0.0044 Score=68.61 Aligned_cols=185 Identities=18% Similarity=0.172 Sum_probs=105.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++..|+||||.||||+...||.++|+ .+++++++.++++.+. + .-.++|.++.. .+.+.++|.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~~----g--------i~~iiiv~~~~-~~~i~~~~~~ 66 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAAREA----G--------AGRIVLVVGHQ-AEKVREHFAG 66 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee---CCccHHHHHHHHHHhc----C--------CCeEEEEECCC-HHHHHHHhcc
Confidence 56789999999999998899999998 6899999998887652 1 23566666654 5667777753
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
.. .+.+..|. .|-|.|+..... ++.+ ++.-+++.+.+-|+++.
T Consensus 67 ~~-------~i~~~~~~------------------------~~~Gt~~al~~a-----~~~l-~~~~~~vlv~~gD~p~~ 109 (459)
T PRK14355 67 DG-------DVSFALQE------------------------EQLGTGHAVACA-----APAL-DGFSGTVLILCGDVPLL 109 (459)
T ss_pred CC-------ceEEEecC------------------------CCCCHHHHHHHH-----HHHh-hccCCcEEEEECCccCc
Confidence 21 12221110 123555422221 2222 22247889999999765
Q ss_pred cccc-hHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCcc
Q 007727 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (591)
Q Consensus 300 ~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~g 378 (591)
...| -.++-.+...++++..-..+......-|.+. + +.+|+. ++..|-++.. +.+.. ....
T Consensus 110 ~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~-~-d~~g~v----~~~~ek~~~~-----~~~~~-------~~~~ 171 (459)
T PRK14355 110 RAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIV-R-DADGRV----LRIVEEKDAT-----PEERS-------IREV 171 (459)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEE-E-cCCCCE----EEEEEcCCCC-----hhHhh-------ccEE
Confidence 4434 3455566666666655444432223446543 2 345543 3333221110 00000 0124
Q ss_pred ceeeeEEehhhhHHHHh
Q 007727 379 NINQLILELGPYMEELK 395 (591)
Q Consensus 379 Ninn~~~~l~~l~~~l~ 395 (591)
|++.++|+-+.+.+.+.
T Consensus 172 ~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 172 NSGIYCVEAAFLFDAIG 188 (459)
T ss_pred EEEEEEEeHHHHHHHHH
Confidence 88889999876655553
No 44
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.38 E-value=0.0025 Score=62.34 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=83.8
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
+|+||||.||||. .+.||.++|+ .++ +++++.++.+.. ++ .-.++|.|+.. .+.+.++|.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~----~g--------i~~iivv~~~~-~~~i~~~~~ 64 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVN----SG--------IRNVGVLTQYK-SRSLNDHLG 64 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHH----CC--------CCEEEEEeCCC-hHHHHHHHh
Confidence 3789999999996 4799999998 687 999999998876 22 23567777765 678888998
Q ss_pred hCCCCCCCCC--cEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 007727 219 SNSYFGMKPT--QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (591)
Q Consensus 219 ~~~~FGl~~~--~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN 296 (591)
+...||++.. .+.+. . +... ...-.|-|.|+-...-. +.+....-+++.+.+-|+
T Consensus 65 ~~~~~~~~~~~~~~~~~----------------~-~~~~-~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~ 121 (200)
T cd02508 65 SGKEWDLDRKNGGLFIL----------------P-PQQR-KGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDH 121 (200)
T ss_pred CCCcccCCCCCCCEEEe----------------C-cccC-CCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCE
Confidence 7666665411 11111 0 0000 01224567666444332 223233347778888898
Q ss_pred ccccccchHHHHHHhhcCCccee
Q 007727 297 GLLFKAIPASLGVSATKQYHVNS 319 (591)
Q Consensus 297 ~L~~~~Dp~~lG~~~~~~~~~~~ 319 (591)
+....--.++-++.+++.++..
T Consensus 122 -v~~~~~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 122 -IYNMDYREMLDFHIESGADITV 143 (200)
T ss_pred -EEecCHHHHHHHHHHcCCCEEE
Confidence 4333223456666666666544
No 45
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=97.31 E-value=0.0088 Score=63.86 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=86.4
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.||||+ ...||.++|+ .+++++++.++.+.+. + .-.++|+|+....+...+++.+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~~----g--------i~~i~vv~~~~~~~~i~~~~~~ 66 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAEA----G--------ITDIGIVVGPVTGEEIKEIVGE 66 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE---CCEeHHHHHHHHHHHC----C--------CCEEEEEeCCCCHHHHHHHHhc
Confidence 5889999999996 4889999998 6899999999888641 1 2256788888688889999987
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
...||++ +.+..|. .|.|.++-..+.. +.+ . +-.++ +.+-|+++-
T Consensus 67 ~~~~~~~---~~~~~~~------------------------~~~G~~~al~~a~-----~~l-~-~~~~l-i~~gD~~~~ 111 (353)
T TIGR01208 67 GERFGAK---ITYIVQG------------------------EPLGLAHAVYTAR-----DFL-G-DDDFV-VYLGDNLIQ 111 (353)
T ss_pred ccccCce---EEEEECC------------------------CCCCHHHHHHHHH-----Hhc-C-CCCEE-EEECCeecC
Confidence 5555532 2222110 1345544333221 222 1 22454 556688653
Q ss_pred cccchHHHHHHhhcCCcceeeeccCcccCccceE
Q 007727 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (591)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i 333 (591)
..+ -.++-.+.++++++.+-+.+......-|++
T Consensus 112 ~~l-~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~ 144 (353)
T TIGR01208 112 DGI-SRFVKSFEEKDYDALILLTKVRDPTAFGVA 144 (353)
T ss_pred ccH-HHHHHHHHhcCCCcEEEEEECCChhhCeEE
Confidence 222 245666777888877666552222334643
No 46
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.31 E-value=0.00028 Score=70.98 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=50.8
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
|++|+||||.|+|||.+.||..+++ .|++++++.++.+.+.. ..=-++|..+....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~~-----------~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLASP-----------EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTTT-----------TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcCC-----------CCCeEEEEecchhHHHHHHhhcC
Confidence 6899999999999999999999998 79999999999876521 11235667777777888888877
No 47
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=97.28 E-value=0.01 Score=60.43 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=99.4
Q ss_pred EEEcCC--cCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 144 VLVAGG--LGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 144 v~LaGG--~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
|+|||| .||||.- ..||.++|+ .+++++++.++.+..+ + .+.-+++......+.+.+++.
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~---~---------gi~~i~iv~~~~~~~i~~~l~ 66 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV---P---------DLKEVLLIGFYPESVFSDFIS 66 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc---C---------CCcEEEEEecCCHHHHHHHHH
Confidence 678888 8999975 789999998 6899999998887642 1 232233334447788889987
Q ss_pred hCC-CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCc
Q 007727 219 SNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (591)
Q Consensus 219 ~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~ 297 (591)
+.. .+|+ .|.+..| ..|-|.|+-.... .+.+....-+++.|.+-|++
T Consensus 67 ~~~~~~~~---~i~~~~~------------------------~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~gD~~ 114 (257)
T cd06428 67 DAQQEFNV---PIRYLQE------------------------YKPLGTAGGLYHF-----RDQILAGNPSAFFVLNADVC 114 (257)
T ss_pred hcccccCc---eEEEecC------------------------CccCCcHHHHHHH-----HHHhhccCCCCEEEEcCCee
Confidence 642 2232 1211110 1133444433222 12222223467888888984
Q ss_pred cccccchHHHHHHhhcCCcceeeeccC--cccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCC
Q 007727 298 LLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (591)
Q Consensus 298 L~~~~Dp~~lG~~~~~~~~~~~kvv~r--~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~ 375 (591)
...---.++-++.++++++.+-+.+. .....-|++ .+...+|+. .++.|-+.. + . +.
T Consensus 115 -~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v-~~d~~~g~v----~~~~Ekp~~------~---~------~~ 173 (257)
T cd06428 115 -CDFPLQELLEFHKKHGASGTILGTEASREQASNYGCI-VEDPSTGEV----LHYVEKPET------F---V------SD 173 (257)
T ss_pred -cCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEE-EEeCCCCeE----EEEEeCCCC------c---c------cc
Confidence 32211345778888888876555432 223344654 331134543 334332210 1 0 11
Q ss_pred CccceeeeEEehhhh
Q 007727 376 FPGNINQLILELGPY 390 (591)
Q Consensus 376 f~gNinn~~~~l~~l 390 (591)
..|+..++|+-+.+
T Consensus 174 -~~~~Giyi~~~~~~ 187 (257)
T cd06428 174 -LINCGVYLFSPEIF 187 (257)
T ss_pred -eEEEEEEEECHHHH
Confidence 24999999998754
No 48
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.27 E-value=0.0078 Score=61.47 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=89.0
Q ss_pred EEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.||||+- ..||.++|+ .|+++++..++.+.+. .|.-+++......+.+.++|.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSHH-------------GINDFIICCGYKGYVIKEYFAN 65 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHHHHHHHC-------------CCCEEEEEcCCCHHHHHHHHHh
Confidence 47899999999954 489999998 7899999888877641 3444444555667888999986
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
...+|. ..++.+ +++.+.... ...++.. -.......|-|.|+.+..... .+ +-+++.+.+-|+ +.
T Consensus 66 ~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~~gt~~al~~~~~------~i--~~e~flv~~gD~-i~ 130 (254)
T TIGR02623 66 YFLHMS-DVTFHM-ADNTMEVHH-KRVEPWR---VTLVDTGESTQTGGRLKRVRE------YL--DDEAFCFTYGDG-VA 130 (254)
T ss_pred hhhccc-CeeEEe-ccccccccc-ccCCccc---eeeeecCCcCCcHHHHHHHHH------hc--CCCeEEEEeCCe-Ee
Confidence 543321 123322 233332221 1111100 000011246777765443322 12 135566888888 43
Q ss_pred cccchHHHHHHhhcCCcceeeeccCcccCccceEE
Q 007727 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (591)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~ 334 (591)
..---.++-++.+.++++.+.+++ +...-|++.
T Consensus 131 ~~dl~~~~~~h~~~~~d~tl~~~~--~~~~yG~v~ 163 (254)
T TIGR02623 131 DIDIKALIAFHRKHGKKATVTAVQ--PPGRFGALD 163 (254)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEec--CCCcccEEE
Confidence 322234566677778887655442 234457643
No 49
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.26 E-value=0.005 Score=64.50 Aligned_cols=187 Identities=16% Similarity=0.187 Sum_probs=124.2
Q ss_pred cceEEEEEcCCcCccC---CccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 139 KNAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 139 ~kvavv~LaGG~GTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
..++.|+|.||.|||| -++.||.+.|+ ..+.+++.+++.+.. .| .--+|+.|+++-.+--+.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpf---gn~pmI~hqieal~n---------sG---i~~I~la~~y~s~sl~~~ 72 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPF---GNKPMILHQIEALIN---------SG---ITKIVLATQYNSESLNRH 72 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCccccc---CcchhhHHHHHHHHh---------CC---CcEEEEEEecCcHHHHHH
Confidence 4688999999999998 57899999998 488999998887754 22 456788999888777777
Q ss_pred HHHhC-CCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeC
Q 007727 216 LLESN-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (591)
Q Consensus 216 ~l~~~-~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~v 294 (591)
+.+.| ..|| ..|. |.|.+. |-|--|-..+..+ .|.... +- -++|-|-
T Consensus 73 ~~k~y~~~lg---Vei~-~s~ete-----------------------plgtaGpl~laR~--~L~~~~--~~-~ffVLns 120 (371)
T KOG1322|consen 73 LSKAYGKELG---VEIL-ASTETE-----------------------PLGTAGPLALARD--FLWVFE--DA-PFFVLNS 120 (371)
T ss_pred HHHHhhhccc---eEEE-EEeccC-----------------------CCcccchHHHHHH--HhhhcC--CC-cEEEecC
Confidence 77777 3444 2333 233332 3333333333222 122111 11 4567787
Q ss_pred CCccccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCC
Q 007727 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 374 (591)
Q Consensus 295 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~ 374 (591)
| .|++..--.|+-+|..+++|...-|++=...-+-|++.. ....|+ | +.++|.|+.+...+
T Consensus 121 D-vi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~-d~~~gr--V--~~F~EKPkd~vsnk------------- 181 (371)
T KOG1322|consen 121 D-VICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVI-DEDTGR--V--IRFVEKPKDLVSNK------------- 181 (371)
T ss_pred C-eeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEE-ecCCCc--e--eEehhCchhhhhcc-------------
Confidence 7 489988888999999999999888887544556686653 222454 3 78888887654332
Q ss_pred CCccceeeeEEehhhhHHHH
Q 007727 375 PFPGNINQLILELGPYMEEL 394 (591)
Q Consensus 375 ~f~gNinn~~~~l~~l~~~l 394 (591)
-|.....|+-+.+.+++
T Consensus 182 ---inaGiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 182 ---INAGIYILNPEVLDRIL 198 (371)
T ss_pred ---ccceEEEECHHHHhHhh
Confidence 25566677877776665
No 50
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.24 E-value=0.00093 Score=67.13 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=57.9
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (591)
...|+||.|.|+|||.+.||.++.+ .|++++..++++|... ..--.+|.|+....+-..+|+.++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~~------------gi~e~vvV~~g~~~~lve~~l~~~ 68 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV---GGREIIYRTIENLAKA------------GITEFVVVTNGYRADLVEEFLKKY 68 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc---CCeEeHHHHHHHHHHc------------CCceEEEEeccchHHHHHHHHhcC
Confidence 3578999999999999999999998 6999999999988651 134579999999999999999998
Q ss_pred CC
Q 007727 221 SY 222 (591)
Q Consensus 221 ~~ 222 (591)
++
T Consensus 69 ~~ 70 (239)
T COG1213 69 PF 70 (239)
T ss_pred Cc
Confidence 75
No 51
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=97.22 E-value=0.015 Score=58.27 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=76.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.++||+ ||.++|+ .|++++++.++++.+. . .+.-++..+. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~----~--------~i~~ivvv~~--~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI---AGKPMIQHVYERAKKA----K--------GLDEVVVATD--DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc---CCcCHHHHHHHHHHhC----C--------CCCEEEEECC--cHHHHHHHHH
Confidence 4678999999999996 7999998 7999999999998752 0 2333333332 4778888764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+ |. . .+... + ..+.|.|++..++.. + ....+++.+.+.|+++.
T Consensus 61 ~---~~-----~--------~~~~~--------~------~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli 103 (239)
T cd02517 61 F---GG-----K--------VVMTS--------P------DHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLI 103 (239)
T ss_pred c---CC-----E--------EEEcC--------c------ccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCC
Confidence 2 21 1 11100 0 113455665555421 2 12247888999999875
Q ss_pred cccch-HHHHHHhhc-CCcceeeecc
Q 007727 300 FKAIP-ASLGVSATK-QYHVNSLAVP 323 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~-~~~~~~kvv~ 323 (591)
..-+. .++-.+... +++++.-+++
T Consensus 104 ~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 104 PPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 44332 233333334 5665555554
No 52
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.07 E-value=0.0076 Score=59.80 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=80.5
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.|+||+ ...||.++|+ .+++++++.++.+.+. + --.++|.++..-.+.+++++++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~~----g--------~~~iivv~~~~~~~~i~~~l~~ 67 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEKA----G--------FEDVIVVVPEEEQAEISTYLRS 67 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHHC----C--------CCeEEEEECHHHHHHHHHHHHh
Confidence 5779999999997 4789999998 6899999999988751 2 1245677766555678888876
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+.+ ... . ...... . ....+.|.|+..+...+. + .+.+.+.+.|.+..
T Consensus 68 ~~~-~~~--------~---------~~~~~~--~----~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~ 114 (214)
T cd04198 68 FPL-NLK--------Q---------KLDEVT--I----VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITD 114 (214)
T ss_pred ccc-ccC--------c---------ceeEEE--e----cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccc
Confidence 431 000 0 000111 0 012356777777665542 1 24466777775322
Q ss_pred cccchHHHHHHhhcCCcceeeecc
Q 007727 300 FKAIPASLGVSATKQYHVNSLAVP 323 (591)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~ 323 (591)
... -.++-.+..+++.+.+-+.+
T Consensus 115 ~~l-~~~l~~h~~~~~~~t~~~~~ 137 (214)
T cd04198 115 LPL-IELVDLHRSHDASLTVLLYP 137 (214)
T ss_pred cCH-HHHHHHHhccCCcEEEEEec
Confidence 222 34556666677777665554
No 53
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.07 E-value=0.00056 Score=68.60 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=50.5
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (591)
+++|+||||.|+|||.+.||.++++ .|++++++.+++++... ..-.++|.|+........++++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~~-----------~~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLADN-----------RCSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcCC-----------CCCEEEEEeChhhHHHHHHHHHhc
Confidence 6889999999999998889999998 79999999999876420 012466777666556566666653
No 54
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.04 E-value=0.0013 Score=64.16 Aligned_cols=61 Identities=28% Similarity=0.430 Sum_probs=47.4
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
..|+||||.|||||. .||.++|+ .|++++++.++.+.... .-.+++.+|. .++.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~~~------------i~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLKSK------------VNNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEE---CCEEHHHHHHHHHHhCC------------CCEEEEEeCC-CHHHHHHHHhh
Confidence 568999999999975 79999998 79999999999987521 1245666765 45678888764
No 55
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.00 E-value=0.00077 Score=69.13 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=48.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
++++|+||||.|+|||.+.||..+++ .|++++++.++.+.... + .=.++|.++....+.....++
T Consensus 24 ~i~aIILAAG~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~~~---~--------i~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 24 SVSVILLAGGVGKRMGANMPKQYLPL---LGQPIALYSLYTFARMP---E--------VKEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred ceEEEEEcccccccCCCCCCcceeEE---CCeEHHHHHHHHHHhCC---C--------CCeEEEEeCHHHHHHHHHHHH
Confidence 68899999999999998899999998 79999999998876521 1 123555665554555555554
No 56
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=97.00 E-value=0.016 Score=63.79 Aligned_cols=263 Identities=17% Similarity=0.169 Sum_probs=141.2
Q ss_pred cCcccccccccC---CCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC-----CCCCCCCC
Q 007727 157 NGIKVALPAETT---TGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN-----SYFGMKPT 228 (591)
Q Consensus 157 ~~pK~~lpv~~~---~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~-----~~FGl~~~ 228 (591)
..|||+||...- ....|-+..+|-.+ |.. .+ ..+-+=.-.|..-.+.-.+.+++- ..||. +=
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~-----Ya~--~~--g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v-~f 234 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAAL-----YAK--SN--GKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGV-KF 234 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHH-----HHh--cC--CeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCc-eE
Confidence 689999998321 22334444444433 221 11 133333444554443333433331 22333 23
Q ss_pred cEEEEEecc---eeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccch-
Q 007727 229 QVKLLKQEK---VACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP- 304 (591)
Q Consensus 229 ~V~~F~Q~~---~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp- 304 (591)
+|.|=.|.. -.++ +.+..|.. .+.+++..-|.|||.+..-| .+..-..|||=||||+.....-.
T Consensus 235 ~IsfS~Qk~sTDTIAv-~~dN~pFR--~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvpd~~k~~ 302 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAV-DPDNTPFR--NEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVPDRLKEE 302 (513)
T ss_pred EEEecccCCCCCeeEE-CCCCCccC--CCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCCcccchh
Confidence 566666742 2355 47888888 66789999999999866554 44567889999999976432211
Q ss_pred ------HHHHHHhh------------------------------cC------------------------Ccceeeecc-
Q 007727 305 ------ASLGVSAT------------------------------KQ------------------------YHVNSLAVP- 323 (591)
Q Consensus 305 ------~~lG~~~~------------------------------~~------------------------~~~~~kvv~- 323 (591)
++.|..++ +. ++==+.||-
T Consensus 303 t~~yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGM 382 (513)
T PF14134_consen 303 TVKYKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGM 382 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeec
Confidence 01111110 00 000123454
Q ss_pred -CcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccc
Q 007727 324 -RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIK 402 (591)
Q Consensus 324 -r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~ 402 (591)
|+.+|+-||--.+.+.||...+..||=++|+..-..+.. -+...|.| |=-.+.+.++.|+- ..-.|+
T Consensus 383 VkNeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~~---if~~~THF-----NPVDLVCgvkdykG----~kFdL~ 450 (513)
T PF14134_consen 383 VKNEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQKE---IFKNSTHF-----NPVDLVCGVKDYKG----EKFDLP 450 (513)
T ss_pred cccCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHHH---HHHcCCCC-----CccceEeeccCCCC----CcCCch
Confidence 788999999888888999865555999998544322210 11222323 54566666654321 122466
Q ss_pred cccCCcc--cCCCCCcccCcch-hhhh-hcc--ccccCCCCCceeEEEecccceeeccccCCcc
Q 007727 403 EFVNPKY--KDASKTSFKSSTR-LECM-MQD--YPKTLPPSAKVGFTVMDTWLAYAPVKNNPED 460 (591)
Q Consensus 403 ~~vnpK~--~d~~~~~~~~~~k-lE~~-i~D--~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~ 460 (591)
.+|+|+. +.. +..--+++| ||.= .++ +.. =...|++||= ..|.|||+..|+
T Consensus 451 ~fvD~~tgFIs~-KSk~Gk~LKAlELPGLWNGaMa~-----WnTvFVEVPl-~TFNPVKTVnDL 507 (513)
T PF14134_consen 451 DFVDPNTGFISE-KSKNGKELKALELPGLWNGAMAD-----WNTVFVEVPL-ITFNPVKTVNDL 507 (513)
T ss_pred hccCCCCceeee-cCCCCccchhhccCCcccchhcC-----CceEEEEecc-ccCCCccchhhh
Confidence 6777652 110 000002233 4432 111 111 1236789995 999999998876
No 57
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.98 E-value=0.015 Score=62.13 Aligned_cols=197 Identities=17% Similarity=0.230 Sum_probs=102.8
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
+|+||||.||||+ .+.||.++|+ .++ +++++.++.+... + .-.++|.+.. ..+.+.++|.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~----g--------i~~i~iv~~~-~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCINS----G--------IRRIGVLTQY-KSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee---cceeeEeeehhhhhhhc----C--------CceEEEEecc-ChHHHHHHHH
Confidence 3899999999997 3689999998 688 7999999888662 2 1235666664 4456888887
Q ss_pred hCCCCCCCC---CcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhH-HHhhcChHHHHHHcCceEEEEEeC
Q 007727 219 SNSYFGMKP---TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA-LLYSSGLLKEWHDAGLKWVLFFQD 294 (591)
Q Consensus 219 ~~~~FGl~~---~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~-aL~~sG~l~~l~~~G~eyi~v~~v 294 (591)
+. +++.. ..+.++ |. .....-...|.|.|+... ++ +.+....-+++.+.+-
T Consensus 65 ~~--~~~~~~~~~~~~~~-----~~------------~~~~~~~~~~~Gt~~al~~a~------~~~~~~~~~~~lv~~g 119 (361)
T TIGR02091 65 RG--WDFDGFIDGFVTLL-----PA------------QQRESGTDWYQGTADAVYQNL------DLIEDYDPEYVLILSG 119 (361)
T ss_pred hc--cCccCccCCCEEEe-----CC------------cccCCCCccccCcHHHHHHHH------HHHHhcCCCEEEEecC
Confidence 52 23221 011110 00 000011123567655433 33 2222233467788888
Q ss_pred CCccccccchHHHHHHhhcCCcceeeecc--CcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCC
Q 007727 295 TNGLLFKAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 372 (591)
Q Consensus 295 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~--r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~ 372 (591)
|+ +...---.++-.+..++.++.+-+.+ .......|.+. + +.+|+ + .++.|.+.. ++....+ .+
T Consensus 120 D~-l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~-~-d~~~~--v--~~~~ekp~~------~~~~~~~-~~ 185 (361)
T TIGR02091 120 DH-IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ-V-DEDGR--I--VDFEEKPAN------PPSIPGM-PD 185 (361)
T ss_pred CE-EEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE-E-CCCCC--E--EEEEECCCC------ccccccc-cc
Confidence 98 43321123455555566654443332 22334456554 3 23443 2 455443211 1111000 01
Q ss_pred CCCCccceeeeEEehhhhHHHHhh
Q 007727 373 YSPFPGNINQLILELGPYMEELKK 396 (591)
Q Consensus 373 f~~f~gNinn~~~~l~~l~~~l~~ 396 (591)
. +..|+..+.|+-+.+.+.+..
T Consensus 186 ~--~~~~~Giyi~~~~~l~~~l~~ 207 (361)
T TIGR02091 186 F--ALASMGIYIFDKDVLKELLEE 207 (361)
T ss_pred c--cEEeeeEEEEcHHHHHHHHHH
Confidence 1 134899999998766555543
No 58
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.94 E-value=0.021 Score=56.84 Aligned_cols=122 Identities=17% Similarity=0.100 Sum_probs=77.1
Q ss_pred EEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.||||+- ..||.++|+ .++++++..++.+... + .-.++|.|.. ..+...+++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~~----g--------i~~i~vv~~~-~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKEA----G--------IDDIVIVTGY-KKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE---CCEEHHHHHHHHHHHC----C--------CceEEEEecc-CHHHHHHHHhc
Confidence 37899999999974 579999998 6899999999987651 1 1245666665 56777777764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L 298 (591)
+ +| +.+ +. .. .+.|.|.++ ++.++ +.+ -+++.+.+.|++
T Consensus 65 ~--~~-----~~~----------------~~--~~----~~~~~g~~~s~~~~~------~~~----~~~~lv~~~D~~- 104 (229)
T cd02523 65 Y--PN-----IKF----------------VY--NP----DYAETNNIYSLYLAR------DFL----DEDFLLLEGDVV- 104 (229)
T ss_pred c--CC-----eEE----------------Ee--Cc----chhhhCcHHHHHHHH------HHc----CCCEEEEeCCEe-
Confidence 3 11 111 11 00 012345533 33332 222 267888899984
Q ss_pred ccccchHHHHHHhhcCCcceeeecc
Q 007727 299 LFKAIPASLGVSATKQYHVNSLAVP 323 (591)
Q Consensus 299 ~~~~Dp~~lG~~~~~~~~~~~kvv~ 323 (591)
.++.++-.+.+.+.+..+-+.+
T Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 105 ---FDPSILERLLSSPADNAILVDK 126 (229)
T ss_pred ---cCHHHHHHHHcCCCCCeEEEcc
Confidence 2556777777788887765554
No 59
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.91 E-value=0.0019 Score=62.19 Aligned_cols=61 Identities=28% Similarity=0.373 Sum_probs=49.2
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (591)
.+|+||||.|||||. .-|.++++ .|+.++++.++.++. ... -+++-||.+|- .|++|+++-
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~d----------~i~v~isp~tp-~t~~~~~~~ 62 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IVD----------EIIVAISPHTP-KTKEYLESV 62 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hcC----------cEEEEeCCCCH-hHHHHHHhc
Confidence 579999999999996 77889997 899999998888766 322 35788888775 589998874
No 60
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.91 E-value=0.0016 Score=61.06 Aligned_cols=56 Identities=27% Similarity=0.434 Sum_probs=43.5
Q ss_pred EEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
+|+||||.|+||| +||.++|+ .|+|+++..++.+.... .-+++|.+.. +++.+++.
T Consensus 1 ~vILa~G~s~Rmg--~~K~l~~i---~g~~li~~~l~~l~~~~------------~~~Ivvv~~~---~~~~~~~~ 56 (160)
T PF12804_consen 1 AVILAAGKSSRMG--GPKALLPI---GGKPLIERVLEALREAG------------VDDIVVVTGE---EEIYEYLE 56 (160)
T ss_dssp EEEEESSSCGGGT--SCGGGSEE---TTEEHHHHHHHHHHHHT------------ESEEEEEEST---HHHHHHHT
T ss_pred CEEECCcCcccCC--CCccceeE---CCccHHHHHHHHhhccC------------CceEEEecCh---HHHHHHHh
Confidence 5899999999998 49999998 89999999999997641 1256777776 34555443
No 61
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.87 E-value=0.024 Score=62.51 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=36.0
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+.+|+||||.||||+...||.++|+ .|++++++.++++.+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~ 42 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKK 42 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhhCEe---CCccHHHHHHHHHHh
Confidence 4688999999999998899999998 689999999999864
No 62
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=96.87 E-value=0.003 Score=66.33 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=50.3
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
.+-+|+||||.||||. ...||.++|| .+++++++.++.+... + .--++|.|+. ..+.+.+|
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~~----G--------i~~ivivv~~-~~~~i~~~ 66 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVAA----G--------IKEIVLVTHA-SKNAVENH 66 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHHC----C--------CCEEEEEecC-ChHHHHHH
Confidence 4578999999999997 4789999998 7999999999988751 2 1234566664 77789999
Q ss_pred HHh
Q 007727 217 LES 219 (591)
Q Consensus 217 l~~ 219 (591)
|..
T Consensus 67 ~~~ 69 (297)
T TIGR01105 67 FDT 69 (297)
T ss_pred Hhc
Confidence 964
No 63
>PLN02917 CMP-KDO synthetase
Probab=96.82 E-value=0.059 Score=56.52 Aligned_cols=183 Identities=11% Similarity=0.055 Sum_probs=100.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++++|++|+|.++||+ +|.++|+ .|++++++.++++... + .+..++.. ..++.+.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~----~--------~~~~VVV~--~~~e~I~~~~~~ 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHI---LGKPMIQRTWERAKLA----T--------TLDHIVVA--TDDERIAECCRG 106 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeE---CCEEHHHHHHHHHHcC----C--------CCCEEEEE--CChHHHHHHHHH
Confidence 7889999999999996 5999998 7999999999998642 1 23334443 235677777764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+ |. . ++... ...+.|-|.+..++ +.+ +...+++.+.+-|.+|.
T Consensus 107 ~---~v-----~--------vi~~~--------------~~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI 149 (293)
T PLN02917 107 F---GA-----D--------VIMTS--------------ESCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLI 149 (293)
T ss_pred c---CC-----E--------EEeCC--------------cccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCC
Confidence 3 21 1 11100 01244555565443 222 23457899999999986
Q ss_pred cccchH-HHHHHhhcC-CcceeeeccCcccCc--cceEEEEecCCCcee-E--E-EEeccCccHHHHhcCCCCCCCCcCC
Q 007727 300 FKAIPA-SLGVSATKQ-YHVNSLAVPRKAKEA--IGGITRLTHADGRSM-V--I-NVEYNQLDPLLRATGFPDGDVNCET 371 (591)
Q Consensus 300 ~~~Dp~-~lG~~~~~~-~~~~~kvv~r~~~e~--vG~i~~~~~~dG~~~-v--~-~VEYsel~~~l~~~~~~~g~l~~~~ 371 (591)
..-+.. ++-.+..+. +.++.-+.+-.+.+. -|.+.++++.+|+.. . . .+|+.+-. ++.+.
T Consensus 150 ~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~--------~~~~~---- 217 (293)
T PLN02917 150 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGK--------VNPQF---- 217 (293)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcc--------ccccc----
Confidence 653221 223222222 222223232233333 355544456677521 0 0 12332210 00111
Q ss_pred CCCCCccceeeeEEehhhhHHHHh
Q 007727 372 GYSPFPGNINQLILELGPYMEELK 395 (591)
Q Consensus 372 ~f~~f~gNinn~~~~l~~l~~~l~ 395 (591)
..--|+....|+.++|. .+.
T Consensus 218 ---i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 218 ---PYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred ---ceEEEEEEEEeCHHHHH-HHH
Confidence 12349999999999887 443
No 64
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.78 E-value=0.0027 Score=60.44 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=34.1
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+++|+||||.|+|||. ||.++|+ .|++++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 4689999999999984 9999998 799999999998865
No 65
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.77 E-value=0.029 Score=62.63 Aligned_cols=195 Identities=19% Similarity=0.185 Sum_probs=100.7
Q ss_pred EEEEcCCcCccCC----ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRLG----~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
.|+||||.||||+ .+.||.++|+ ..++|++|..++++..+ + .-..+|.|+..-.....+.++
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l--~g~~~ll~~tl~~l~~~----~--------~~~iviv~~~~~~~~~~~~l~ 68 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLAL--VGDLTMLQQTLKRLAGL----P--------CSSPLVICNEEHRFIVAEQLR 68 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEc--CCCCcHHHHHHHHHhcC----C--------CcCcEEecCHHHHHHHHHHHH
Confidence 6899999999997 3579999998 34599999999987653 1 113446676544445566665
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHH--cCceEEEEEeCCC
Q 007727 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD--AGLKWVLFFQDTN 296 (591)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~--~G~eyi~v~~vDN 296 (591)
+. |++.. +++.++ .|-|.|+.-.. .. ..+.+ .+=.++.|.+.|+
T Consensus 69 ~~---~~~~~------------------~~i~Ep--------~~~gTa~ai~~-aa----~~~~~~~~~~~~vlVl~~D~ 114 (468)
T TIGR01479 69 EI---GKLAS------------------NIILEP--------VGRNTAPAIAL-AA----LLAARRNGEDPLLLVLAADH 114 (468)
T ss_pred Hc---CCCcc------------------eEEecc--------cccCchHHHHH-HH----HHHHHHHCCCcEEEEecCce
Confidence 42 22211 122211 11122221111 00 11212 2345788999998
Q ss_pred ccccccc-hHHHHHH---hhcCCcceeeeccCcccCccceEEEEecCC--CceeEEEEeccCccHHHHhcCCCCCCCCcC
Q 007727 297 GLLFKAI-PASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHAD--GRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (591)
Q Consensus 297 ~L~~~~D-p~~lG~~---~~~~~~~~~kvv~r~~~e~vG~i~~~~~~d--G~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (591)
++....+ -.++-.+ .+++..+.+-+.+..|.-.-|.+..-...+ +...| ..+-|.|..-.+.. .+.
T Consensus 115 ~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~l~-- 186 (468)
T TIGR01479 115 VITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQV--QRFVEKPDLATAQA----YLE-- 186 (468)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEE--eEEEECCChHHHHH----HHh--
Confidence 6542111 0122222 234554555555555666778775310001 21223 33334433211110 010
Q ss_pred CC-CCCCccceeeeEEehhhhHHHHhh
Q 007727 371 TG-YSPFPGNINQLILELGPYMEELKK 396 (591)
Q Consensus 371 ~~-f~~f~gNinn~~~~l~~l~~~l~~ 396 (591)
+| | ++ |+.++.|+.+.+.+.+.+
T Consensus 187 ~g~~-~w--NsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 187 SGDY-YW--NSGMFLFRASRYLAELKK 210 (468)
T ss_pred cCCe-EE--EeeEEEEEHHHHHHHHHH
Confidence 11 2 34 999999999888887765
No 66
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.73 E-value=0.051 Score=54.38 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=44.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~~~T~~~l~ 218 (591)
++++|+||+|.++||+ +|.++|+ .|++++++.++++.+. + .+ .++|-|. ++.+.++++
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~----~--------~~~~ivv~t~---~~~i~~~~~ 60 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI---LGKPMIQHVYERAAQA----A--------GVEEVYVATD---DQRIEDAVE 60 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc---CCcCHHHHHHHHHHhc----C--------CCCeEEEECC---hHHHHHHHH
Confidence 4788999999999995 5999998 7999999999988752 0 12 2344442 477888887
Q ss_pred h
Q 007727 219 S 219 (591)
Q Consensus 219 ~ 219 (591)
+
T Consensus 61 ~ 61 (238)
T PRK13368 61 A 61 (238)
T ss_pred H
Confidence 5
No 67
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=96.67 E-value=0.061 Score=52.97 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=77.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
|+++|+||||.|+||+ .|.++|+ .|++++++.++++++. + .+.-++.++ +++.+.+++++
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~----~--------~~~~IvV~~--~~~~i~~~~~~ 60 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALES----K--------LFDRVVVST--DDEEIAEVARK 60 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhC----C--------CCCEEEEEC--CcHHHHHHHHH
Confidence 5789999999999996 4899997 7999999999998752 1 122233333 34666776664
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccC--CCch-hhHHHhhcChHHHHHHc--CceEEEEEeC
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPH--GHGD-VHALLYSSGLLKEWHDA--GLKWVLFFQD 294 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~--GhG~-i~~aL~~sG~l~~l~~~--G~eyi~v~~v 294 (591)
+ |. . ..+ +.. ..+..+ |-++ +..+ ++.+... +.+++.+.+.
T Consensus 61 ~---~~---~-~~~-------~~~--------------~~~~~~~~~~~~~i~~~------l~~l~~~~~~~d~vlv~~~ 106 (223)
T cd02513 61 Y---GA---E-VPF-------LRP--------------AELATDTASSIDVILHA------LDQLEELGRDFDIVVLLQP 106 (223)
T ss_pred h---CC---C-cee-------eCC--------------hHHCCCCCCcHHHHHHH------HHHHHHhCCCCCEEEEeCC
Confidence 3 21 0 011 100 001111 2122 3333 2333332 3679999999
Q ss_pred CCccccccch-HHHHHHhhcCCcceeeeccC
Q 007727 295 TNGLLFKAIP-ASLGVSATKQYHVNSLAVPR 324 (591)
Q Consensus 295 DN~L~~~~Dp-~~lG~~~~~~~~~~~kvv~r 324 (591)
|.++...-+- .++-.+..++.+..+-+++.
T Consensus 107 D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 107 TSPLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9998765332 23444455667777776663
No 68
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0058 Score=65.85 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=89.0
Q ss_pred eEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+-+|+||||.||||- .+.||.++|+ .++++++++++.+.+ + .+-=++++-....+.+.++|
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~----~---------Gv~eivi~~~y~~~~i~~~~ 65 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA----A---------GVEEIVLVVGYLGEQIEEYF 65 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee---CCccHHHHHHHHHHH----C---------CCcEEEEEeccchHHHHHHH
Confidence 357899999999995 5899999998 699999999999865 1 34455666778888899999
Q ss_pred HhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCc
Q 007727 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (591)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~ 297 (591)
.....+|++ |.+..|.. |-|.|+-..... +.+ +.+-+++.+-|+.
T Consensus 66 ~d~~~~~~~---I~y~~e~~------------------------~lGTag~l~~a~-----~~l---~~~~f~v~~GDv~ 110 (358)
T COG1208 66 GDGEGLGVR---ITYVVEKE------------------------PLGTAGALKNAL-----DLL---GGDDFLVLNGDVL 110 (358)
T ss_pred hcccccCCc---eEEEecCC------------------------cCccHHHHHHHH-----Hhc---CCCcEEEEECCee
Confidence 987555442 33322211 444444333321 111 2266778888873
Q ss_pred cccccchHHHHHHhhcCCcceeeecc-CcccCccceEE
Q 007727 298 LLFKAIPASLGVSATKQYHVNSLAVP-RKAKEAIGGIT 334 (591)
Q Consensus 298 L~~~~Dp~~lG~~~~~~~~~~~kvv~-r~~~e~vG~i~ 334 (591)
.-.. --.++.++.++++...+-.+. ..+ ..-|++.
T Consensus 111 ~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~ 146 (358)
T COG1208 111 TDLD-LSELLEFHKKKGALATIALTRVLDP-SEFGVVE 146 (358)
T ss_pred eccC-HHHHHHHHHhccCccEEEEEecCCC-CcCceEE
Confidence 2222 234677777775444444443 233 4567544
No 69
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.54 E-value=0.0045 Score=59.38 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=40.7
Q ss_pred EEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchH
Q 007727 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 211 (591)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~ 211 (591)
+|+||||.|+||| .||.++|+ .|+++++..++++++. + .-+++|.|+...++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~~~----~--------~~~iivv~~~~~~~ 53 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNALRL----F--------FDEVILVLGHEADE 53 (188)
T ss_pred eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHHHc----C--------CCcEEEEeCCcHHH
Confidence 6899999999998 69999998 7999999999988752 1 22566777765433
No 70
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.52 E-value=0.0024 Score=62.70 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=35.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCC-cchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTG-TCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~-~s~lql~~~~i~~ 183 (591)
+++.|+||||+++||| .+|.++|+ .+ +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHHH
Confidence 7899999999999997 68999998 67 9999999998864
No 71
>PRK10122 GalU regulator GalF; Provisional
Probab=96.41 E-value=0.0088 Score=62.79 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=50.7
Q ss_pred cceEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 139 ~kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
.++.+|+||||.||||. ...||.++|+ .+++++++.++.+... + .-.++|+|. ...+.+.+
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~~ 65 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVAA----G--------IKEIVLVTH-ASKNAVEN 65 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHHC----C--------CCEEEEEcC-CChHHHHH
Confidence 35778999999999997 5789999998 6899999999988761 2 223456655 57788899
Q ss_pred HHH
Q 007727 216 LLE 218 (591)
Q Consensus 216 ~l~ 218 (591)
+|.
T Consensus 66 ~~~ 68 (297)
T PRK10122 66 HFD 68 (297)
T ss_pred HHh
Confidence 986
No 72
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=96.36 E-value=0.014 Score=57.53 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=34.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
.+..|+||||++.|| .+|.++++ .|++++|+.++++..
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~~ 41 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLRP 41 (192)
T ss_pred CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhcc
Confidence 568899999999999 99999998 799999999999864
No 73
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=96.26 E-value=0.0039 Score=59.95 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=33.6
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (591)
+++|+||||.|||||- .||.++|+ .|+++++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 4689999999999982 49999998 79999999999885
No 74
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.24 Score=51.63 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=107.2
Q ss_pred eEEEEEcCC--cCccC---CccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 141 AAFVLVAGG--LGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 141 vavv~LaGG--~GTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
+..|+|.|| -|||+ .++.||-++|+ .|....+.++....++..+. =+++..++..+....
T Consensus 3 ~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~~l~------------eI~LvGFy~e~~f~~ 67 (407)
T KOG1460|consen 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQISGLA------------EILLVGFYEERVFTD 67 (407)
T ss_pred eEEEEEecCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhcccchh------------heeEEecccchHHHH
Confidence 334445566 48995 68999999998 79999998888776654443 245667777788888
Q ss_pred HHHhCC-CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeC
Q 007727 216 LLESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (591)
Q Consensus 216 ~l~~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~v 294 (591)
|+.+-. .| ++|. +. --+..|.|.||-...+. |..++---..+|+.|.
T Consensus 68 fis~~~~e~-------------~~pv------rY--------L~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvlna 115 (407)
T KOG1460|consen 68 FISAIQQEF-------------KVPV------RY--------LREDNPLGTAGGLYHFR-----DQILAGSPSAVFVLNA 115 (407)
T ss_pred HHHHHHhhc-------------ccch------hh--------hccCCCCCcccceeehh-----hHHhcCCCceEEEEec
Confidence 887632 11 1221 11 12346888876555444 3455567889999998
Q ss_pred CCccccccchHHHHHHhhcCCcceeeeccCc--ccCccceEEEEecC-CCceeEEEEeccCccH
Q 007727 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHA-DGRSMVINVEYNQLDP 355 (591)
Q Consensus 295 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~--~~e~vG~i~~~~~~-dG~~~v~~VEYsel~~ 355 (591)
|= -+....+.++..+...+..+.+.++.-+ .+-.-|-++ .++ .|+. +-|.|.|.
T Consensus 116 DV-CcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV--~dP~t~ev----lHYveKPs 172 (407)
T KOG1460|consen 116 DV-CCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLV--EDPSTGEV----LHYVEKPS 172 (407)
T ss_pred ce-ecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeee--ecCCcCce----EEeecCcc
Confidence 84 5666678899999999999999888844 444456443 342 3443 67877653
No 75
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=96.24 E-value=0.0038 Score=59.73 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=33.7
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++.|+||||.|+|||. ||.++|+ .|+++++..++++..
T Consensus 1 ~~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 1 ITGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred CcEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 3579999999999984 9999998 799999999998865
No 76
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.18 E-value=0.061 Score=58.06 Aligned_cols=200 Identities=16% Similarity=0.201 Sum_probs=124.9
Q ss_pred cceEEEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHH
Q 007727 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 214 (591)
Q Consensus 139 ~kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~ 214 (591)
+++-.++||||+|+||+ ...+|..+|+ .|| -+.|+.+-... + .| ---+.+.|-...| ...
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpF---gGkYRiIDF~LSN~v------N---SG---i~~I~VltQy~~~-SL~ 67 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPF---GGKYRIIDFALSNCV------N---SG---IRRIGVLTQYKSH-SLN 67 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccccccc---CceeEEEeEEccccc------c---cC---CCeEEEEeccchh-HHH
Confidence 36778899999999996 3678888887 344 34444333322 1 11 3457888999888 667
Q ss_pred HHHHhCCCCCCCC--CcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEE
Q 007727 215 ELLESNSYFGMKP--TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (591)
Q Consensus 215 ~~l~~~~~FGl~~--~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~ 292 (591)
.++..-..|++++ +.|+++ |.-...++ -.|+-.+-=.+|.. +..+.+-+-+|+.+.
T Consensus 68 ~Hi~~G~~w~l~~~~~~v~il-----p~~~~~~~-----------~~wy~Gtadai~Qn------l~~i~~~~~eyvlIl 125 (393)
T COG0448 68 DHIGRGWPWDLDRKNGGVFIL-----PAQQREGG-----------ERWYEGTADAIYQN------LLIIRRSDPEYVLIL 125 (393)
T ss_pred HHhhCCCccccccccCcEEEe-----CchhccCC-----------CcceeccHHHHHHh------HHHHHhcCCCEEEEe
Confidence 7777766666653 333332 22111111 12333222234433 333556799999999
Q ss_pred eCCCccccccchHHHHHHhhcCCcceeeecc--CcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcC
Q 007727 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (591)
Q Consensus 293 ~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~--r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (591)
+-|= +.+.==-.+|-+|.+.++|+..-|.+ +..+..-|++ .+ +++||. +|+.|.|.. +...
T Consensus 126 sgDh-IYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim-~~-D~~~~i----~~F~eKp~~--------~~~~-- 188 (393)
T COG0448 126 SGDH-IYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVM-NV-DENGRI----IEFVEKPAD--------GPPS-- 188 (393)
T ss_pred cCCE-EEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCce-EE-CCCCCE----EeeeeccCc--------CCcc--
Confidence 9886 55553346799999999999887776 5555566733 33 566764 788776543 1111
Q ss_pred CCCCCCccceeeeEEehhhhHHHHhhc
Q 007727 371 TGYSPFPGNINQLILELGPYMEELKKT 397 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l~~~ 397 (591)
.+ .+...+..|+-+.|.++|.+.
T Consensus 189 --~~--laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 189 --NS--LASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred --cc--eeeeeeEEEcHHHHHHHHHHH
Confidence 11 346888999999999999753
No 77
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=96.15 E-value=0.0062 Score=61.59 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=53.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
++.+|++|+|.|||||.+.||-.+++ .|+++|+..++.++.... --.++|.++..-+....++.+
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~~~-----------i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLESPA-----------IDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred eEEEEEEcCccccccCCCCCceEEEE---CCEEehHHHHHHHHhCcC-----------CCeEEEEEChhhhHHHHHhhh
Confidence 57899999999999999999999998 799999999998876321 124677777777777777765
No 78
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.14 E-value=0.013 Score=60.14 Aligned_cols=120 Identities=21% Similarity=0.251 Sum_probs=81.2
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
-|+||||.||||- ...||.++|| -+|+.+++-++++.. ++ .--+.|.++..+-...++++..
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~----aG--------I~dI~II~~~~~~~~~~~llGd 67 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLML----AG--------IRDILIVVGPEDKPTFKELLGD 67 (286)
T ss_pred cEEecCcCccccccccccCCccccee---cCcchhHhHHHHHHH----cC--------CceEEEEecCCchhhhhhhhcC
Confidence 4789999999984 6899999998 789999999999865 22 2246777888788888888887
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
-..||.+ +++-.|+ .|.|=++.+. +-+++. |-+-..++--||++-
T Consensus 68 gs~~gv~---itY~~Q~------------------------~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi~~ 112 (286)
T COG1209 68 GSDFGVD---ITYAVQP------------------------EPDGLAHAVL------IAEDFV--GDDDFVLYLGDNIFQ 112 (286)
T ss_pred ccccCcc---eEEEecC------------------------CCCcHHHHHH------HHHhhc--CCCceEEEecCceec
Confidence 7888874 4443332 3444444443 233332 434455777799877
Q ss_pred cccchHHHHHHhhc
Q 007727 300 FKAIPASLGVSATK 313 (591)
Q Consensus 300 ~~~Dp~~lG~~~~~ 313 (591)
. --..++-.+.+.
T Consensus 113 ~-~l~~~~~~~~~~ 125 (286)
T COG1209 113 D-GLSELLEHFAEE 125 (286)
T ss_pred c-ChHHHHHHHhcc
Confidence 7 334455555543
No 79
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=96.12 E-value=0.0041 Score=61.49 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=35.0
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++|+||||.|||||.+.||.++++ .|++++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHhc
Confidence 368999999999998789999998 799999999998864
No 80
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.11 E-value=0.0052 Score=60.55 Aligned_cols=39 Identities=33% Similarity=0.428 Sum_probs=34.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+++.|+||||.|+|||. +|.++|+ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHHh
Confidence 67899999999999984 7999998 799999999998863
No 81
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=96.09 E-value=0.0048 Score=60.83 Aligned_cols=40 Identities=33% Similarity=0.440 Sum_probs=35.8
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+++|+||||.|+|||...||.++|+ .|++++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHhc
Confidence 4679999999999987789999998 799999999999864
No 82
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.09 E-value=0.0054 Score=59.60 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=34.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (591)
++.+|+||||.|+||| ..||.++|+ .|+++++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEE---CCEEHHHHHHHHHh
Confidence 6789999999999996 369999998 79999999999875
No 83
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.07 E-value=0.0053 Score=61.22 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=37.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++++|+||||.|+|||...||.++|+ .|++++++.++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHHc
Confidence 57889999999999998899999998 799999999998864
No 84
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=96.00 E-value=0.0067 Score=58.79 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=32.4
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++|+||||.|+|||. +|.++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHHh
Confidence 579999999999984 7999997 799999999987654
No 85
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=95.81 E-value=0.019 Score=58.43 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=47.9
Q ss_pred EEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
-+|+||||.||||+- ..||.++|+ .|++++++.++.+.. ++ .-.++|+|+.. .+.+.++|.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~----~g--------i~~v~iv~~~~-~~~i~~~~~ 65 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE----AG--------IEDILIVTGRG-KRAIEDHFD 65 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh----CC--------CCEEEEEeCCc-HHHHHHHhc
Confidence 368999999999964 789999998 689999999988765 12 12456777755 666888886
Q ss_pred h
Q 007727 219 S 219 (591)
Q Consensus 219 ~ 219 (591)
+
T Consensus 66 ~ 66 (260)
T TIGR01099 66 T 66 (260)
T ss_pred c
Confidence 3
No 86
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.69 E-value=0.0095 Score=64.41 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=34.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+++.|+||||+|+||| .+|.++|+ .|+++++..++.+..
T Consensus 174 ~i~~iILAGG~SsRmG--~~K~ll~~---~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 174 PLSGLVLAGGRSSRMG--SDKALLSY---HESNQLVHTAALLRP 212 (369)
T ss_pred CceEEEEcCCccccCC--CCcEEEEE---CCccHHHHHHHHHHh
Confidence 5689999999999998 59999998 799999999888853
No 87
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.68 E-value=0.01 Score=64.08 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=35.9
Q ss_pred cceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHH
Q 007727 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (591)
Q Consensus 139 ~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (591)
.++++|+||||+||||| ..||.++|+ .|+++++..++.+.
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 47899999999999996 479999998 79999999999885
No 88
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=95.61 E-value=0.023 Score=58.10 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=47.2
Q ss_pred EEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
-+|+||||.||||.- ..||.++|+ .|++++++.++.+.+ ++ .-.++|.|.. ..+.+.++|.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~----~g--------i~~i~iv~~~-~~~~i~~~~~ 65 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVA----AG--------IEDIIIVTGR-GKRAIEDHFD 65 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHH----CC--------CCEEEEEeCC-chHHHHHHhC
Confidence 368999999999963 789999998 689999999998875 12 1135566664 5677888885
Q ss_pred h
Q 007727 219 S 219 (591)
Q Consensus 219 ~ 219 (591)
.
T Consensus 66 ~ 66 (267)
T cd02541 66 R 66 (267)
T ss_pred C
Confidence 4
No 89
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=95.46 E-value=0.012 Score=63.94 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=37.8
Q ss_pred cceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 139 ~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
.++++|+||||.|+|||...||.++|+ .|++++++.++.+.+
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~~ 45 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLSS 45 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHhc
Confidence 367899999999999998899999998 799999999888764
No 90
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=95.42 E-value=0.014 Score=62.60 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=34.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
.+..|+||||+|+||| .+|.++|+ .|+++++..++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHHh
Confidence 6788999999999998 69999998 699999998877754
No 91
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.38 E-value=0.026 Score=62.41 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=48.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
++.+|+||||.||||+...||.++|+ .++++++..++++.+. + .-.+++.++. ..+.+.+++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~~----g--------i~~i~vv~~~-~~~~i~~~~~ 67 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQHVIDAANEL----G--------AQHVHLVYGH-GGDLLKQTLA 67 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee---CChhHHHHHHHHHHhc----C--------CCcEEEEECC-CHHHHHHhhc
Confidence 57889999999999998889999998 7999999999988541 1 2245666664 4455666654
No 92
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.26 E-value=0.025 Score=59.44 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=105.7
Q ss_pred eEEEEEcCCcCccC----CccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 141 AAFVLVAGGLGERL----GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 141 vavv~LaGG~GTRL----G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
+.-|+||||.|||| --..||..+.+ .+++|+||..++|+..+.. .-.+++.|+..-...+++=
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L--~~~~Sllq~T~~R~~~l~~-----------~~~~~vVtne~~~f~v~eq 68 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKL--FGDLSLLQQTVKRLAFLGD-----------IEEPLVVTNEKYRFIVKEQ 68 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceee--CCCCcHHHHHHHHHhhcCC-----------ccCeEEEeCHHHHHHHHHH
Confidence 45689999999999 45789999887 4689999999999877533 2345667776666666665
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 007727 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (591)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN 296 (591)
|.+-+. ....+ ++++|..++. +|- |..+ .+.-..+.|=.-+.|..-|-
T Consensus 69 l~e~~~-------------------~~~~~-illEP~gRnT---ApA----IA~a-----a~~~~~~~~d~~~lVlpsDH 116 (333)
T COG0836 69 LPEIDI-------------------ENAAG-IILEPEGRNT---APA----IALA-----ALSATAEGGDALVLVLPSDH 116 (333)
T ss_pred Hhhhhh-------------------ccccc-eEeccCCCCc---HHH----HHHH-----HHHHHHhCCCcEEEEecCcc
Confidence 554211 01122 4444333321 221 1111 12222333433455555555
Q ss_pred ccccccchHHHHH------HhhcCCcceeeeccCcccCccceEEEEec-CC-CceeEEEEeccCccHHHHhcC-CCCCCC
Q 007727 297 GLLFKAIPASLGV------SATKQYHVNSLAVPRKAKEAIGGITRLTH-AD-GRSMVINVEYNQLDPLLRATG-FPDGDV 367 (591)
Q Consensus 297 ~L~~~~Dp~~lG~------~~~~~~~~~~kvv~r~~~e~vG~i~~~~~-~d-G~~~v~~VEYsel~~~l~~~~-~~~g~l 367 (591)
+.+.- ..|.-- .++++.=+.+=.+|..|.---|=|-.-.. .+ |-+.| -++-|.|.+..++. ...|.
T Consensus 117 -~I~d~-~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V--~~FvEKPd~etA~~yv~sG~- 191 (333)
T COG0836 117 -VIADE-EAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKV--DRFVEKPDLETAKKYVESGE- 191 (333)
T ss_pred -eeccH-HHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEe--eeeeeCCCHHHHHHHHHcCc-
Confidence 22211 122111 11233444444555556555554432100 01 23334 55666666643331 11222
Q ss_pred CcCCCCCCCccceeeeEEehhhhHHHHhhc
Q 007727 368 NCETGYSPFPGNINQLILELGPYMEELKKT 397 (591)
Q Consensus 368 ~~~~~f~~f~gNinn~~~~l~~l~~~l~~~ 397 (591)
| +| |...+.|+.+.+.+.+++.
T Consensus 192 -----y-~W--NSGmF~Fra~~~l~e~~~~ 213 (333)
T COG0836 192 -----Y-LW--NSGMFLFRASVFLEELKKH 213 (333)
T ss_pred -----e-Ee--eccceEEEHHHHHHHHHhh
Confidence 3 56 9999999999888877663
No 93
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.14 E-value=0.014 Score=58.16 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=33.2
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHH
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+|+||||.||||+ .+.||.++|+ .++++++..++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE---CCEEHHHHHHHhhhc
Confidence 5899999999995 4789999998 789999999988865
No 94
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=94.71 E-value=0.078 Score=52.67 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=46.0
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+|+||||.|+||+ ...||.++|+ .|++++++.++.+.+ .+ .--.+|++...- +...+++.+
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~----~g--------i~~i~vv~~~~~-~~~~~~~~~ 66 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEK----AG--------VEEVFVVCCEHS-QAIIEHLLK 66 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE---CCEEHHHHHHHHHHH----CC--------CCeEEEEeCCcH-HHHHHHHHh
Confidence 5779999999996 3789999998 789999998888765 11 123667777654 445666665
Q ss_pred CC
Q 007727 220 NS 221 (591)
Q Consensus 220 ~~ 221 (591)
..
T Consensus 67 ~~ 68 (216)
T cd02507 67 SK 68 (216)
T ss_pred cc
Confidence 43
No 95
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=94.68 E-value=0.059 Score=56.73 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=48.0
Q ss_pred eEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
.-+|++|||.||||.- ..||.++|+ .++++++..++.+.+. + .--++|.+. ...+.+.++|
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~ 72 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIAA----G--------ITEIVLVTH-SSKNSIENHF 72 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHHC----C--------CCEEEEEeC-CCHHHHHHHH
Confidence 3468889999999964 699999998 7899999999998762 1 123445555 4568899999
Q ss_pred Hh
Q 007727 218 ES 219 (591)
Q Consensus 218 ~~ 219 (591)
..
T Consensus 73 ~~ 74 (302)
T PRK13389 73 DT 74 (302)
T ss_pred cc
Confidence 64
No 96
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=94.45 E-value=0.075 Score=59.51 Aligned_cols=197 Identities=21% Similarity=0.190 Sum_probs=105.9
Q ss_pred eEEEEEcCCcCccCC----ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 141 vavv~LaGG~GTRLG----~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
+-.|+||||.||||- ...||.++|+ ..++|+||..++++..+ + ..-++ |.|+..-.+.+++-
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~----~-------~~~~i-ivt~~~~~~~v~~q 71 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV----E-------CESPV-VICNEQHRFIVAEQ 71 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC----C-------CCCcE-EEeCHHHHHHHHHH
Confidence 567999999999994 2369999998 35689999999987653 1 12244 55887666666666
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHc--C-ceEEEEEe
Q 007727 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--G-LKWVLFFQ 293 (591)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~--G-~eyi~v~~ 293 (591)
+.+.+. ...+++++|..++ ++|-- .+.+++ +.++ + -.-+.|..
T Consensus 72 l~~~~~---------------------~~~~ii~EP~~rn---TApai---alaa~~-------~~~~~~~~~~~v~vlP 117 (478)
T PRK15460 72 LRQLNK---------------------LTENIILEPAGRN---TAPAI---ALAALA-------AKRHSPESDPLMLVLA 117 (478)
T ss_pred HHhcCC---------------------ccccEEecCCCCC---hHHHH---HHHHHH-------HHHhcCCCCCeEEEec
Confidence 654321 0124555333222 23321 112211 1222 2 24666777
Q ss_pred CCCcccccc----chHHHHHH-hhcCCcceeeeccCcccCccceEEEEecCC-----CceeEEEEeccCccHHHHhc-CC
Q 007727 294 DTNGLLFKA----IPASLGVS-ATKQYHVNSLAVPRKAKEAIGGITRLTHAD-----GRSMVINVEYNQLDPLLRAT-GF 362 (591)
Q Consensus 294 vDN~L~~~~----Dp~~lG~~-~~~~~~~~~kvv~r~~~e~vG~i~~~~~~d-----G~~~v~~VEYsel~~~l~~~-~~ 362 (591)
.|. +.... +-.--+.. ++.+.=+.+=+.|..|.---|=|-.-...+ +-+.| ..+.|.|+...++ -.
T Consensus 118 aDH-~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V--~~F~EKPd~~tA~~yl 194 (478)
T PRK15460 118 ADH-VIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEV--AQFVEKPNLETAQAYV 194 (478)
T ss_pred ccc-ccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEe--eEEEeCCCHHHHHHHH
Confidence 776 32221 11111221 122433444444566776667654211101 21233 4556665553322 11
Q ss_pred CCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhc
Q 007727 363 PDGDVNCETGYSPFPGNINQLILELGPYMEELKKT 397 (591)
Q Consensus 363 ~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~ 397 (591)
.+|+ | +| |..++.|+.+.+.+.+++.
T Consensus 195 ~~G~------y-~W--NsGiF~~~a~~~l~~~~~~ 220 (478)
T PRK15460 195 ASGE------Y-YW--NSGMFLFRAGRYLEELKKY 220 (478)
T ss_pred HcCC------E-EE--ecceeheeHHHHHHHHHHH
Confidence 1222 2 46 9999999999988888764
No 97
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=94.35 E-value=0.12 Score=52.31 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=31.3
Q ss_pred EEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+|++|+|.||||+ +|.++++ .|++++++.++++++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~ 36 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANE 36 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHh
Confidence 6889999999994 7999998 799999999998764
No 98
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=92.64 E-value=0.32 Score=48.62 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=42.4
Q ss_pred EEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccc-hHHHHHHHHh
Q 007727 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDT-HSRTQELLES 219 (591)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T-~~~T~~~l~~ 219 (591)
+|+||||.++||| +|.++|+ .|++++++.++.+... + .--.++|-|+..- ++...+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~~~----~-------~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLKRS----K-------LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHHhC----C-------CCCeEEEECCCCcccHHHHHHHHH
Confidence 4789999999995 5999997 7999999999988651 0 0113556565443 2566676653
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=91.55 E-value=0.15 Score=49.98 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=33.7
Q ss_pred EEEEcCCcCccC---CccCcccccccccCCCcchHHHHHHHHHH
Q 007727 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 143 vv~LaGG~GTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
.|+||.|+|||+ -.+.||+++.| .|+.+++.++++++.
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e 43 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE 43 (231)
T ss_pred eEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH
Confidence 588999999997 46899999998 899999999999865
No 100
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=89.11 E-value=0.62 Score=48.23 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=43.0
Q ss_pred EEEEcCCcCccC---CccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 143 vv~LaGG~GTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
.|+.|.|+|||+ --.-||-|||+ -+|...|+.++.... .| .--++|.|+.+-+ .+.++|.
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiVeEa~~---------aG---Ie~i~iVTgr~K~-~IeDhFD 69 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIVEEAVA---------AG---IEEILIVTGRGKR-AIEDHFD 69 (291)
T ss_pred EEEEccCcccccccccccCchhhccc---cCchhHHHHHHHHHH---------cC---CCEEEEEecCCcc-hHHHhCc
Confidence 578899999998 34689999998 679999999997755 12 3345666665433 4555554
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=88.25 E-value=0.59 Score=46.26 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=46.6
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+++.|+||-|.|+||| .+|-++|+ .|++++...+++.+. ++ -=-+++.|+....+.-...+
T Consensus 5 ~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~----a~--------~~~vivV~g~~~~~~~~a~~ 65 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS----AG--------LDRVIVVTGHRVAEAVEALL 65 (199)
T ss_pred ceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh----cC--------CCeEEEEeCcchhhHHHhhh
Confidence 7899999999999999 89999997 899999999998764 11 11467778877444434333
No 102
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=76.94 E-value=45 Score=33.36 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=76.0
Q ss_pred EEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 007727 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (591)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~ 222 (591)
+|++|.|.++||+ .|-+.|+ .|++++++.++..++. + .+--++.+++ ++++.++.+++
T Consensus 2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s----~--------~~d~IvVstd--~~~i~~~a~~~-- 59 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNS----G--------LFDKVVVSTD--DEEIAEVAKSY-- 59 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhC----C--------CCCEEEEeCC--CHHHHHHHHHc--
Confidence 4778899999995 5888887 7999999999988652 1 1222333443 35677777753
Q ss_pred CCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHH-cCceEEEEEeCCCccccc
Q 007727 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDTNGLLFK 301 (591)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~-~G~eyi~v~~vDN~L~~~ 301 (591)
|. . +|..... .++.---|..++... .++.+.. ...+++.+.+.|.+|...
T Consensus 60 -g~---~--------v~~~r~~------------~l~~d~~~~~~si~~-----~l~~l~~~~~~d~v~~l~~tsPl~~~ 110 (222)
T TIGR03584 60 -GA---S--------VPFLRPK------------ELADDFTGTAPVVKH-----AIEELKLQKQYDHACCIYATAPFLQA 110 (222)
T ss_pred -CC---E--------eEEeChH------------HHcCCCCCchHHHHH-----HHHHHhhcCCCCEEEEecCCCCcCCH
Confidence 32 1 1111100 000000111222221 1233322 346889999999999876
Q ss_pred cchH-HHHHHhhcCCcceeeeccC
Q 007727 302 AIPA-SLGVSATKQYHVNSLAVPR 324 (591)
Q Consensus 302 ~Dp~-~lG~~~~~~~~~~~kvv~r 324 (591)
-|-. .+....+.++|..+-|++.
T Consensus 111 ~~I~~~i~~~~~~~~ds~~sv~~~ 134 (222)
T TIGR03584 111 KILKEAFELLKQPNAHFVFSVTSF 134 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecc
Confidence 4432 2344445678998888883
No 103
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=63.37 E-value=14 Score=37.33 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=48.1
Q ss_pred ceEEEEEcCCcCccCCccCc--ccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCc-cchHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGI--KVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD-DTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~p--K~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~-~T~~~T~~~ 216 (591)
++++|+=| |||++.= |.++|+ .+.++++++++++++...+ =-++|-||. .+++....+
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL---~~~pmI~~~lervrks~~~-----------d~ivvATS~~~~d~~l~~~ 63 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL---GGEPMIEYQLERVRKSKDL-----------DKIVVATSDKEEDDALEEV 63 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc---CCCchHHHHHHHHhccccc-----------cceEEEecCCcchhHHHHH
Confidence 56677766 7776643 678998 7899999999999875433 247888988 677778888
Q ss_pred HHhCCC
Q 007727 217 LESNSY 222 (591)
Q Consensus 217 l~~~~~ 222 (591)
+.++.+
T Consensus 64 ~~~~G~ 69 (241)
T COG1861 64 CRSHGF 69 (241)
T ss_pred HHHcCe
Confidence 888765
No 104
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=40.45 E-value=1.8e+02 Score=28.35 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=67.0
Q ss_pred CceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEc
Q 007727 438 AKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWK 517 (591)
Q Consensus 438 ~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~ 517 (591)
.++++ ..+||+.=+|+|-... ..-.-.++-.-..++.+..|++-.+ .|+++
T Consensus 24 ~~i~v-~~e~we~~~~~~~~~~-------------~~~i~~a~~~eid~l~~e~Gyk~~D---------------vvsv~ 74 (181)
T COG1791 24 SKIEV-SFERWEATALIKHGAE-------------KEHIIDAYETEIDRLIRERGYKNRD---------------VVSVS 74 (181)
T ss_pred cccee-EhhhhhhccccccCcc-------------hhhhHhhHHHHHHHHHHhhCCceee---------------EEEeC
Confidence 45565 6788885566653211 0111111222333566777876321 36777
Q ss_pred CCCCCCHHHHhhhcCCC-CccCCCceEEEEeceEEeeCeEEEEEE-EEEeCCCCeEEecCCeEee
Q 007727 518 PKWGLTFSEIKNKVSGS-CSVSQKSTMVIKGRNVVLEDLSLNGAL-IIDSVDDAEVCYIMPILRY 580 (591)
Q Consensus 518 p~f~~~~~~~~~k~~~~-~~i~~~s~L~v~g~~~~~~~v~L~G~v-~I~a~~~~~~~i~~~~~~~ 580 (591)
|. .+..+++.++|..- -.=-..-...|.|+.+|.-. .-+|++ .|.+..|.-|.||.||=|+
T Consensus 75 ~~-~pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~-~~d~~~~~i~c~~gDLI~vP~gi~Hw 137 (181)
T COG1791 75 PS-NPKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVH-SPDGKVYQIRCEKGDLISVPPGIYHW 137 (181)
T ss_pred CC-CccHHHHHHHHHHHhccCCceEEEEEecceEEEEE-CCCCcEEEEEEccCCEEecCCCceEE
Confidence 76 57889998888642 11123446789999988321 125554 7788999999999998664
No 105
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=36.95 E-value=40 Score=36.84 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=54.7
Q ss_pred ceEEEEEcCCcCccC---CccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 140 NAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
+.-.|++|||=|||| +..-||.+||| .+++.+.+-+..+.+. + -.-+++.+-..-.+++++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI---gn~PMi~YpL~~L~~~----g--------fteiiVv~~e~e~~~i~~a 73 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI---GNKPMILYPLNSLEQA----G--------FTEIIVVVNEDEKLDIESA 73 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc---CCcceeeeehhHHHhc----C--------CeEEEEEecHHHHHHHHHH
Confidence 445688999999998 45899999998 6888888877777652 1 2234455556666788888
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEe
Q 007727 217 LESNSYFGMKPTQVKLLKQEKVACLD 242 (591)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~ 242 (591)
|.++ +-+...+.+. .+|++.
T Consensus 74 l~~~--~~l~~~~~~v----~ip~~~ 93 (433)
T KOG1462|consen 74 LGSN--IDLKKRPDYV----EIPTDD 93 (433)
T ss_pred HhcC--CcccccccEE----Eeeccc
Confidence 8764 3344333333 356654
No 106
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.49 E-value=2.5e+02 Score=27.80 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCcc-chHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCcee
Q 007727 171 TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDD-THSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLA 249 (591)
Q Consensus 171 ~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~-T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~ 249 (591)
-+..+-.++.|.+|+.-+.+ ..||++--.-.. -..+-+..|++--.=|+++.. -+|..+-.+.-..+.++
T Consensus 50 ~~~~~~li~Ni~~Lr~~~~~------~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p---~~~~vv~~l~P~~~D~v 120 (218)
T COG1535 50 CPLMEQLIANIAKLRIWCKQ------AGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASP---EQQKVVDELAPGADDTV 120 (218)
T ss_pred CccHHHHHHHHHHHHHHHHH------cCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCCh---hhhhhHHhcCCCCCceE
Confidence 34678888999999888764 379987766664 455667777764444554331 12222212221222233
Q ss_pred cCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeC
Q 007727 250 MDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (591)
Q Consensus 250 l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~v 294 (591)
| .+ | -|.|+++|.+++.|++.|+..+.+..|
T Consensus 121 L---~k----w-------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 121 L---TK----W-------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred E---ee----e-------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 3 11 1 289999999999999999998876554
No 107
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.33 E-value=2e+02 Score=29.46 Aligned_cols=89 Identities=21% Similarity=0.208 Sum_probs=56.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHH-----------HHHhhhhccCCcccc-cEEEecCc
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL-----------QESSCRLAEGKCQEI-PFAIMTSD 207 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l-----------~~~~~~~~~g~~~~i-Pl~IMTS~ 207 (591)
+..+|+.|==..|||- . |-+-. ..|+++.+..++|..+- ++.+... ... --++|||.
T Consensus 3 ~~~viIPAR~~STRLp-g--KPLad---I~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av-----~~~G~~avmT~~ 71 (247)
T COG1212 3 KFVVIIPARLASTRLP-G--KPLAD---IGGKPMIVRVAERALKSGADRVVVATDDERIAEAV-----QAFGGEAVMTSK 71 (247)
T ss_pred ceEEEEecchhcccCC-C--Cchhh---hCCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-----HHhCCEEEecCC
Confidence 5678888877777772 1 22333 37999999999987643 1111000 011 35799999
Q ss_pred cchH---HHHHHHHhCCCCCCCCCcEEEEEecceeEEe
Q 007727 208 DTHS---RTQELLESNSYFGMKPTQVKLLKQEKVACLD 242 (591)
Q Consensus 208 ~T~~---~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~ 242 (591)
+-.. .+.+.+++. |++++.+.+=.|+..|++.
T Consensus 72 ~h~SGTdR~~Ev~~~l---~~~~~~iIVNvQGDeP~i~ 106 (247)
T COG1212 72 DHQSGTDRLAEVVEKL---GLPDDEIIVNVQGDEPFIE 106 (247)
T ss_pred CCCCccHHHHHHHHhc---CCCcceEEEEccCCCCCCC
Confidence 5544 455555554 4467888888899999973
No 108
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=22.90 E-value=68 Score=28.36 Aligned_cols=50 Identities=22% Similarity=0.456 Sum_probs=31.1
Q ss_pred cchhhhcccCChhH--HHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCC
Q 007727 26 PNLKKNLHLLSSEQ--VELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSS 81 (591)
Q Consensus 26 ~~~~~~~~~l~~~~--~~l~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~id~~ 81 (591)
.+|...|+.|+..+ -.+.++ |-.||+.|-.. =+++||+.|+++|..+|..
T Consensus 37 ~~Ll~~l~~l~v~dkppsiFqC-----qlkLf~qWf~~-W~~~ern~fl~~Lee~D~~ 88 (98)
T PF14969_consen 37 NGLLDSLENLSVQDKPPSIFQC-----QLKLFRQWFPK-WSEEERNKFLEQLEEIDPD 88 (98)
T ss_pred HHHHHHHHhCcCCCCCCcHHHH-----hHHHHHHHHhh-ccHHHHHHHHHHHHHhChH
Confidence 34555555554322 224443 45667766542 3479999999999999953
No 109
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=22.41 E-value=48 Score=24.47 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=11.8
Q ss_pred CCCCCCC---CCcEEEEE
Q 007727 220 NSYFGMK---PTQVKLLK 234 (591)
Q Consensus 220 ~~~FGl~---~~~V~~F~ 234 (591)
|.|||++ .+||+||-
T Consensus 4 n~~FGie~~~sdqIWFYG 21 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFYG 21 (40)
T ss_pred hhhcCccccccccEEEee
Confidence 6789998 57888873
No 110
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=21.72 E-value=2.8e+02 Score=26.86 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=24.6
Q ss_pred EEEEcCCcCccCCccCc--ccccccccCCCcchHHHHHHHHHHH
Q 007727 143 FVLVAGGLGERLGYNGI--KVALPAETTTGTCFLQNYIECILAL 184 (591)
Q Consensus 143 vv~LaGG~GTRLG~~~p--K~~lpv~~~~~~s~lql~~~~i~~l 184 (591)
+|+.| |+|+++- |.+.++ .|++++++.++++++.
T Consensus 2 aiIpA-----R~gS~rlp~Knl~~l---~gkpLi~~~i~~a~~s 37 (217)
T PF02348_consen 2 AIIPA-----RGGSKRLPGKNLKPL---GGKPLIEYVIERAKQS 37 (217)
T ss_dssp EEEEE------SSSSSSTTGGGSEE---TTEEHHHHHHHHHHHT
T ss_pred EEEec-----CCCCCCCCcchhhHh---CCccHHHHHHHHHHhC
Confidence 55666 5565544 567776 8999999999999764
Done!