Query 007727
Match_columns 591
No_of_seqs 236 out of 792
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 3E-120 1E-124 1002.7 41.9 530 36-584 6-574 (630)
2 3r3i_A UTP--glucose-1-phosphat 100.0 1.1E-98 4E-103 819.2 23.0 455 50-583 52-518 (528)
3 3gue_A UTP-glucose-1-phosphate 100.0 6.4E-97 2E-101 800.3 32.7 438 86-582 29-479 (484)
4 2yqc_A UDP-N-acetylglucosamine 100.0 7.5E-91 2.5E-95 763.0 34.8 451 38-531 5-479 (486)
5 1jv1_A Glcnac1P uridyltransfer 100.0 1.1E-86 3.8E-91 732.5 38.3 459 39-531 3-485 (505)
6 2oeg_A UTP-glucose-1-phosphate 100.0 1.1E-87 3.7E-92 737.4 21.5 435 86-582 29-484 (505)
7 3oc9_A UDP-N-acetylglucosamine 100.0 3.1E-84 1E-88 691.0 28.8 369 126-531 19-397 (405)
8 2icy_A Probable UTP-glucose-1- 100.0 2.8E-81 9.5E-86 683.6 31.2 452 67-582 7-461 (469)
9 2i5k_A UTP--glucose-1-phosphat 100.0 2E-79 6.8E-84 672.3 27.8 460 54-587 20-485 (488)
10 3st8_A Bifunctional protein GL 98.6 6.7E-06 2.3E-10 90.2 23.4 190 140-396 12-204 (501)
11 4ecm_A Glucose-1-phosphate thy 98.0 0.00019 6.5E-09 72.0 16.9 177 140-390 24-203 (269)
12 3oam_A 3-deoxy-manno-octuloson 97.8 0.0001 3.4E-09 73.5 11.7 185 140-395 2-197 (252)
13 4fce_A Bifunctional protein GL 97.7 0.0017 5.9E-08 69.5 20.7 180 140-396 8-189 (459)
14 2qh5_A PMI, ALGA, mannose-6-ph 97.7 0.00024 8.2E-09 72.9 12.4 192 140-396 4-204 (308)
15 1fxo_A Glucose-1-phosphate thy 97.7 0.00042 1.4E-08 70.8 13.9 151 140-342 2-155 (293)
16 3brk_X Glucose-1-phosphate ade 97.6 0.00079 2.7E-08 71.8 16.0 206 138-395 10-221 (420)
17 1yp2_A Glucose-1-phosphate ade 97.6 0.00087 3E-08 72.0 15.3 216 140-396 20-246 (451)
18 2y6p_A 3-deoxy-manno-octuloson 97.6 0.00053 1.8E-08 66.6 12.2 113 140-314 2-115 (234)
19 1lvw_A Glucose-1-phosphate thy 97.5 0.0018 6E-08 66.3 15.4 70 141-225 4-76 (295)
20 3k8d_A 3-deoxy-manno-octuloson 97.5 0.00081 2.8E-08 67.8 12.7 187 140-395 18-213 (264)
21 1mc3_A Glucose-1-phosphate thy 97.4 0.0012 4.2E-08 67.4 13.6 70 141-225 4-76 (296)
22 3tqd_A 3-deoxy-manno-octuloson 97.4 0.0011 3.8E-08 66.5 12.5 188 140-394 9-205 (256)
23 1h7e_A 3-deoxy-manno-octuloson 97.4 0.00078 2.7E-08 66.0 11.1 126 140-324 2-129 (245)
24 3pnn_A Conserved domain protei 97.2 0.0067 2.3E-07 62.0 15.4 147 140-323 5-155 (303)
25 1hm9_A GLMU, UDP-N-acetylgluco 97.2 0.0032 1.1E-07 67.7 13.6 180 142-395 13-194 (468)
26 1vic_A 3-deoxy-manno-octuloson 97.1 0.0021 7.1E-08 63.9 10.7 128 140-324 2-130 (262)
27 3q80_A 2-C-methyl-D-erythritol 97.1 0.00043 1.5E-08 68.5 5.4 65 140-218 7-71 (231)
28 2wee_A MOBA-related protein; u 97.1 0.00058 2E-08 64.3 6.0 61 140-218 5-65 (197)
29 2v0h_A Bifunctional protein GL 97.1 0.0095 3.3E-07 63.6 16.3 64 140-219 5-68 (456)
30 2waw_A MOBA relate protein; un 97.1 0.00054 1.9E-08 64.5 5.6 61 140-218 5-65 (199)
31 1qwj_A Cytidine monophospho-N- 97.0 0.0025 8.6E-08 62.1 10.4 129 140-322 3-132 (229)
32 3f1c_A Putative 2-C-methyl-D-e 97.0 0.00091 3.1E-08 66.2 6.5 68 140-221 3-71 (246)
33 2xwl_A 2-C-methyl-D-erythritol 97.0 0.00057 1.9E-08 65.8 4.8 64 140-217 2-65 (223)
34 1tzf_A Glucose-1-phosphate cyt 96.9 0.0012 4.2E-08 65.0 6.8 190 141-390 3-199 (259)
35 2yc3_A 2-C-methyl-D-erythritol 96.9 0.00057 2E-08 66.2 4.1 41 140-183 4-44 (228)
36 1i52_A 4-diphosphocytidyl-2-C- 96.8 0.0007 2.4E-08 66.1 4.4 41 140-183 7-47 (236)
37 3juk_A UDP-glucose pyrophospho 96.8 0.0023 7.7E-08 64.3 7.8 64 141-220 3-69 (281)
38 1vgw_A 4-diphosphocytidyl-2C-m 96.8 0.00068 2.3E-08 65.7 3.6 64 140-219 6-69 (231)
39 1vpa_A 2-C-methyl-D-erythritol 96.7 0.00085 2.9E-08 65.2 4.0 41 140-183 13-53 (234)
40 2vsh_A TARI, 2-C-methyl-D-eryt 96.7 0.0017 5.7E-08 62.9 6.0 65 141-219 3-68 (236)
41 3rsb_A Adenosylcobinamide-phos 96.7 0.0015 5.3E-08 61.6 5.5 61 142-219 2-62 (196)
42 1e5k_A Molybdopterin-guanine d 96.7 0.0012 4E-08 63.4 4.7 39 140-182 6-44 (201)
43 3d5n_A Q97W15_sulso; NESG, SSR 96.7 0.0011 3.8E-08 63.2 4.4 39 140-183 2-40 (197)
44 1ezi_A CMP-N-acetylneuraminic 96.6 0.0014 4.6E-08 63.7 4.6 60 140-219 4-63 (228)
45 2px7_A 2-C-methyl-D-erythritol 96.5 0.0014 4.8E-08 64.4 3.9 37 140-180 25-61 (236)
46 3ngw_A Molybdopterin-guanine d 96.4 0.0018 6.2E-08 62.8 4.1 37 141-182 1-37 (208)
47 4fcu_A 3-deoxy-manno-octuloson 96.4 0.013 4.5E-07 58.5 10.5 183 141-394 2-197 (253)
48 1jyk_A LICC protein, CTP:phosp 96.4 0.0021 7.1E-08 64.0 4.4 41 140-183 25-68 (254)
49 2e3d_A UTP--glucose-1-phosphat 96.2 0.0058 2E-07 62.0 6.5 64 140-219 8-74 (302)
50 2x65_A Mannose-1-phosphate gua 96.2 0.0044 1.5E-07 64.5 5.6 192 141-396 2-206 (336)
51 2ux8_A Glucose-1-phosphate uri 96.2 0.0047 1.6E-07 62.6 5.7 64 140-219 14-80 (297)
52 2e8b_A Probable molybdopterin- 96.2 0.001 3.5E-08 63.7 0.6 39 140-183 14-52 (201)
53 2xme_A CTP-inositol-1-phosphat 95.9 0.0034 1.2E-07 61.1 3.2 61 138-217 16-76 (232)
54 4evw_A Nucleoside-diphosphate- 95.8 0.0016 5.4E-08 65.0 0.2 38 143-183 2-42 (255)
55 2pa4_A UTP-glucose-1-phosphate 95.8 0.0081 2.8E-07 61.8 5.6 62 141-218 13-77 (323)
56 1w55_A ISPD/ISPF bifunctional 95.6 0.0078 2.7E-07 63.7 4.5 41 140-183 3-43 (371)
57 2cu2_A Putative mannose-1-phos 95.2 0.012 4E-07 61.3 4.2 40 141-183 3-47 (337)
58 2dpw_A Hypothetical protein TT 94.8 0.021 7E-07 55.7 4.4 40 140-183 2-44 (232)
59 2ggo_A 401AA long hypothetical 94.6 0.021 7.3E-07 59.9 4.3 59 142-219 2-63 (401)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=2.8e-120 Score=1002.68 Aligned_cols=530 Identities=36% Similarity=0.603 Sum_probs=478.7
Q ss_pred ChhHHHHHHHHHH--CCCccccccccc-CCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 007727 36 SSEQVELAKMLME--MGQSHLFEKWAA-PGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTP 112 (591)
Q Consensus 36 ~~~~~~l~~~L~~--~gQ~Hll~~~~~-l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p 112 (591)
.++.++|+++|.+ +||+|||++|++ ++..++||++|++||..||..|+++|..|++++++++. +..+.++++.+.|
T Consensus 6 ~~~~~~L~~~l~~~~~gQ~HLf~~w~~~l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l~-~~~~~~~~~~~~p 84 (630)
T 3ogz_A 6 NSNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLA-RESEEVDFAALEM 84 (630)
T ss_dssp HHHHHHHHHHHTSTTTCCGGGGTTCCSSGGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHHH-HHTSCCCCSEEEC
T ss_pred hhhHHHHHHHhhhccCCchhhhhhcccccCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHhh-ccccCCccccccc
Confidence 4567889999997 999999999998 54347999999999999999999999999999999994 4455667777873
Q ss_pred --CCCCcccccCCCchhhHHHHHHHHhhcceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhh
Q 007727 113 --SVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR 190 (591)
Q Consensus 113 --~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~ 190 (591)
.+|.+..+..+++++.+|++.|+++|+|+|||+||||||||||+++||+++|+++++++||||++++||+ ++++
T Consensus 85 ~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~~g- 160 (630)
T 3ogz_A 85 PPLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RVGG- 160 (630)
T ss_dssp CSCEEECCCTTCCCHHHHHHHHHHHHHGGGEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HHHC-
T ss_pred CCCCCccccccCCHHHHHHHHHHhHHHHhhceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHH---HHhC-
Confidence 3345666666777889999999999999999999999999999999999999998999999999999999 3454
Q ss_pred hccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhH
Q 007727 191 LAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA 270 (591)
Q Consensus 191 ~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~ 270 (591)
+.||||||||+.||++|++||++ ||++++||+||+|+++||+++++|++++ +++++++|+|+||||+|.
T Consensus 161 ------~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l--~~~~~i~~~P~GhGdv~~ 229 (630)
T 3ogz_A 161 ------KEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLAL--DETGKLLRKPHGHGDVHS 229 (630)
T ss_dssp ------TTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCB--CTTSSBCEECCCTTHHHH
T ss_pred ------CCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecCCCceee--cCCCcccCCCCCCHHHHH
Confidence 48999999999999999999999 9999999999999999999878899999 677899999999999999
Q ss_pred HHhhcC------------------hHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccCcccCccce
Q 007727 271 LLYSSG------------------LLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGG 332 (591)
Q Consensus 271 aL~~sG------------------~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~ 332 (591)
+|+++| +|++|+++|+||+||+||||+|++++||.||||+++++++|++|||+|+|+|++|+
T Consensus 230 aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~vG~ 309 (630)
T 3ogz_A 230 LIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGL 309 (630)
T ss_dssp HHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCSSCE
T ss_pred HHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCCCcceee
Confidence 999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCce-eEEEEeccCccHHHHhcCCCCCC-CCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCccc
Q 007727 333 ITRLTHADGRS-MVINVEYNQLDPLLRATGFPDGD-VNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK 410 (591)
Q Consensus 333 i~~~~~~dG~~-~v~~VEYsel~~~l~~~~~~~g~-l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~~ 410 (591)
+|++++.||++ +|+||||+|++++++..++++|+ +.+.++|++||||||||||+|++|.+.+..+++.||+|+||||.
T Consensus 310 l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~~ 389 (630)
T 3ogz_A 310 LCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYS 389 (630)
T ss_dssp EEEEESSTTSCCEEEEECHHHHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCBS
T ss_pred EEEEecCCCceeeeeEEEeccCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHHHHhccCccceecCCccc
Confidence 99988889999 88889999999999999999898 77778899999999999999999999998888999999999999
Q ss_pred CCCCCcccCcchhhhhhccccccCCCCC-ceeEEEecccceeeccccCCcccccC-CCCCCCCChhhHHHHHHHHHHHHH
Q 007727 411 DASKTSFKSSTRLECMMQDYPKTLPPSA-KVGFTVMDTWLAYAPVKNNPEDAAKV-PKGNPYHSATSGEMAIYCANSLIL 488 (591)
Q Consensus 411 d~~~~~~~~~~klE~~i~D~~~~f~~~~-~~~~~~v~R~~~FsPvKN~~~~~~~~-~~~~~~dsp~t~~~dl~~~~~~~l 488 (591)
|..+..+++++||||||||++++|+... ++++++|+| +||+||||++++|+++ ++|.+.|||.||+.|||+++++||
T Consensus 390 d~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~~V~R-~~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~~~~~~L 468 (630)
T 3ogz_A 390 DETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFER-FSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRL 468 (630)
T ss_dssp SSSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEEECCG-GGCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHH
T ss_pred CCcccccCcchhhhhHHHHHHHhccccCcceeEEEECC-CeeecccCChhHhhhhhccCCCcCChHHHHHHHHHHHHHHH
Confidence 9988888999999999999999997444 889999999 9999999999888554 889999999999999999999999
Q ss_pred HHcCCccc---CCcccccCCe-eecCCCeEEEcCCCCCC--HHHHhhhcCC--CCccCCCceEEEEeceEEeeCeEEEEE
Q 007727 489 RKAGAQVD---DPVQEVFNGQ-EVEVWPRLTWKPKWGLT--FSEIKNKVSG--SCSVSQKSTMVIKGRNVVLEDLSLNGA 560 (591)
Q Consensus 489 ~~~G~~v~---~~~~~~~~~~-~~~~~P~v~l~p~f~~~--~~~~~~k~~~--~~~i~~~s~L~v~g~~~~~~~v~L~G~ 560 (591)
++||+.|+ ++...+++|. +++.+|+|.|+|+|+.+ ++++++||++ +++|+++|+|+|+|+ ++++||.|+|+
T Consensus 469 ~~aG~~v~~~~~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~l~LdG~ 547 (630)
T 3ogz_A 469 KAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGA 547 (630)
T ss_dssp HHTTCCCCCCCSCSEEETTTTEEECCCSEEEECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESCEEEESE
T ss_pred HHcCceecccccchhhhhcCccccCCCCEEEEeccccccccHHHHHHHhCCCCCceecCCcEEEEEEE-EEEEEEEEeeE
Confidence 99999998 4555567888 89999999999999999 9999999999 789999999999999 99999999999
Q ss_pred EEEEeCCCCe----EEecCCeEeeCCee
Q 007727 561 LIIDSVDDAE----VCYIMPILRYGGQS 584 (591)
Q Consensus 561 v~I~a~~~~~----~~i~~~~~~~~~~~ 584 (591)
|+|.|++|++ +.+.. +|.+.|-.
T Consensus 548 lvI~a~~~~~~~~~v~~~~-~v~n~g~~ 574 (630)
T 3ogz_A 548 LTIRGPTDSMALPHVVRNA-VVRNAGWS 574 (630)
T ss_dssp EEEECCSSTTSCCEEECSE-EEECCCCE
T ss_pred EEEEcCCCCccCceEEecc-eEecCCcE
Confidence 9999999999 88877 87777765
No 2
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=1.1e-98 Score=819.20 Aligned_cols=455 Identities=16% Similarity=0.168 Sum_probs=374.7
Q ss_pred CCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhH
Q 007727 50 GQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFIN 129 (591)
Q Consensus 50 gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~ 129 (591)
-|.||+++|+++. +++|+.|.+|++.+. ..++++++.. ....+|+.+.| +|++...+|.+. ..
T Consensus 52 ~~~~l~~~~~~l~--~~~~~~~~~el~~f~-----------~lf~r~l~~~-~~~~~~~~i~p-~p~~~~~~~~~l--~~ 114 (528)
T 3r3i_A 52 VKKELEKILTTAS--SHEFEHTKKDLDGFR-----------KLFHRFLQEK-GPSVDWGKIQR-PPEDSIQPYEKI--KA 114 (528)
T ss_dssp TTSSSTTTSSSCC--TTTTHHHHHHHHHHH-----------HHHHHHHHC--------CCCCC-CCTTTSEEHHHH--TT
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHH-----------HHHHHHHhhc-cCCCCHHHCcC-CCHHHccCHhhc--CC
Confidence 3999999999975 779999999998863 3444555443 34567898987 477766665432 12
Q ss_pred HHHH--HHHhhcceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCc
Q 007727 130 YEQA--GVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD 207 (591)
Q Consensus 130 ~~~~--G~~~l~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~ 207 (591)
|+.. ...+++|+|||+||||||||||+++||+++|+ ++++||||++++||++++++|+ +.||||||||+
T Consensus 115 ~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V--~sgktflql~~eqI~~l~~~~g-------~~IPl~IMTS~ 185 (528)
T 3r3i_A 115 RGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGV--RNENTFLDLTVQQIEHLNKTYN-------TDVPLVLMNSF 185 (528)
T ss_dssp SCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEE--ETTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECT
T ss_pred ccccchhhhhcCceEEEEeCCCCccccCCCCCccceec--CCCCcHHHHHHHHHHHHHHHhC-------CCCCEEEEecc
Confidence 2222 34567799999999999999999999999998 5999999999999999999886 48999999999
Q ss_pred cchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCC----CCCccccccCCCchhhHHHhhcChHHHHHH
Q 007727 208 DTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK----NKYRIQTKPHGHGDVHALLYSSGLLKEWHD 283 (591)
Q Consensus 208 ~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~----~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~ 283 (591)
+||++|++||++|+||| .+|+||+|+++||++ .+|++++... ++++++|+|+||||+|.+|++||+|++|++
T Consensus 186 ~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~-~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~ 261 (528)
T 3r3i_A 186 NTDEDTKKILQKYNHCR---VKIYTFNQSRYPRIN-KESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIG 261 (528)
T ss_dssp TTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEE-TTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHH
T ss_pred chhHHHHHHHHhcCccC---CCeEEEEeCCeeeEe-cCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHh
Confidence 99999999999999998 589999999999997 5788888321 178999999999999999999999999999
Q ss_pred cCceEEEEEeCCCccccccchHHHHHHhhc----CCcceeeeccCc-ccCccceEEEEecCCCceeEEEEeccCccHHHH
Q 007727 284 AGLKWVLFFQDTNGLLFKAIPASLGVSATK----QYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLR 358 (591)
Q Consensus 284 ~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~----~~~~~~kvv~r~-~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~ 358 (591)
+|+||+||+||||++++ +||.||||++.+ +++|++|||+|+ |.|++|++|++ ||++++ |||+|++++.+
T Consensus 262 ~Gieyi~v~nvDNlga~-vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~---dGk~~v--vEyseip~e~~ 335 (528)
T 3r3i_A 262 EGKEYIFVSNIDNLGAT-VDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY---EGKLRL--VEIAQVPKAHV 335 (528)
T ss_dssp TTCCEEEEEETTBTTCC-CCHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS---SSSCEE--ECTTSSCGGGT
T ss_pred cCCEEEEEEccCCcccc-cCHHHHHHHHhcccccCCcEEEEEeEccccCCcccEEEEE---CCeEEE--EEecCCChhHh
Confidence 99999999999997655 699999999998 999999999975 88999999965 999876 99999988754
Q ss_pred hcCCCCCCCCcCCCCCCCc-cceeeeEEehhhhHHHHhhccCccccccCCcccCCCCCcccCcchhhhhhccccccCCCC
Q 007727 359 ATGFPDGDVNCETGYSPFP-GNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPS 437 (591)
Q Consensus 359 ~~~~~~g~l~~~~~f~~f~-gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~ 437 (591)
. +++|++.|+ ||||||||++++|+++++...+.||+|+|||+.|.. ++++|||+||||++++|+..
T Consensus 336 ~---------~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~----~~viqlEt~igd~i~~f~~~ 402 (528)
T 3r3i_A 336 D---------EFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGG----LNVIQLETAVGAAIKSFENS 402 (528)
T ss_dssp T---------TSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSS----SCEEEEEBCSTTCSTTSSSC
T ss_pred h---------ccCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCC----CCEEEeHHHHHHHHHhccCc
Confidence 3 234433343 799999999999999999888889999999998743 47899999999999998653
Q ss_pred CceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEc
Q 007727 438 AKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWK 517 (591)
Q Consensus 438 ~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~ 517 (591)
..++|+|+ ||+||||++++ ...++|+|.+.+ |.-+.++. +.....|.|.|+
T Consensus 403 ---~~i~VpR~-rF~PvKn~sdL-------------ll~~Sdly~l~~------g~l~~~~~------r~~~~~P~v~L~ 453 (528)
T 3r3i_A 403 ---LGINVPRS-RFLPVKTTSDL-------------LLVMSNLYSLNA------GSLTMSEK------REFPTVPLVKLG 453 (528)
T ss_dssp ---CCEECCGG-GCCBCCSHHHH-------------HHHHSTTSEEET------TEEECCSS------CSSCCCCEEEEC
T ss_pred ---EEEEEehH-HcccccchHHH-------------HHHhcceeEeeC------CeEEeccc------ccCCCCCEEEeC
Confidence 34699995 59999999997 456666665543 33233332 234567999999
Q ss_pred CCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEeeCeEEEEEEEEEeCCCCeEEecCCeEeeCCe
Q 007727 518 PKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGGQ 583 (591)
Q Consensus 518 p~f~~~~~~~~~k~~~~~~i~~~s~L~v~g~~~~~~~v~L~G~v~I~a~~~~~~~i~~~~~~~~~~ 583 (591)
|. ++++++|.+||+++|+|.++++|+|+|||+||+||+|+|+|+|+|++|.+++||+|.|+.|+-
T Consensus 454 ~~-~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~len~~ 518 (528)
T 3r3i_A 454 SS-FTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKI 518 (528)
T ss_dssp TT-SCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTCEEECCTTCEEEEEE
T ss_pred cc-cCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCCceecCCCCEEeccE
Confidence 99 579999999999999999999999999999999999999999999999999999999998864
No 3
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=6.4e-97 Score=800.34 Aligned_cols=438 Identities=17% Similarity=0.158 Sum_probs=372.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHHHHHHHHhhcceEEEEEcCCcCccCCccCccccccc
Q 007727 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPA 165 (591)
Q Consensus 86 l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lpv 165 (591)
+..|...+.++++.. .+..+|+.+.| |. ...++++..... .|+++|+|+|||+||||||||||+++||+++|+
T Consensus 29 ~~~f~~~~~~~~~~~-~~~i~~~~i~p--~~-~~~~~~~l~~~~---~G~~~L~kvavvlLaGGlGTRLG~~~pKg~~~v 101 (484)
T 3gue_A 29 IHIFLIQHALVRKGE-TGYIPEKSISP--VE-SLPFLQGIETKG---ENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQV 101 (484)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCGGGCEE--CC-CCCBHHHHCCSS---CCHHHHTTEEEEEEECCCCGGGTCSSCGGGSEE
T ss_pred HHHHHHHHHHHhcCC-CCccCHhhCCC--hh-ccCChhhcCCch---HHHHHHhhcEEEEEcCCcccccCCCCCceeeec
Confidence 456666666766543 35688999987 33 333443221111 699999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCC
Q 007727 166 ETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDND 245 (591)
Q Consensus 166 ~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~ 245 (591)
. +++||||++++||++++++++ +.||||||||+.||++|++||++|+|||+++++|++|+|+++||++.++
T Consensus 102 ~--sgksflql~~eqI~~l~~~~~-------~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg 172 (484)
T 3gue_A 102 K--NGQTFLDFTALQLEHFRQVRN-------CNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDN 172 (484)
T ss_dssp E--TTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTT
T ss_pred C--CCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCC
Confidence 5 999999999999999999986 4899999999999999999999999999999999999999999998655
Q ss_pred CceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccCc
Q 007727 246 ARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK 325 (591)
Q Consensus 246 g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~ 325 (591)
+.+++++ ++++++|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.|||||+++++||++|||+|+
T Consensus 173 ~~~i~~~-~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDN-L~a~~Dp~~lG~~~~~~~d~~~kvv~Kt 250 (484)
T 3gue_A 173 FFPVTYE-ADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLMEVCRRT 250 (484)
T ss_dssp CCBCCCT-TCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTC-TTCCCCHHHHHHHHHTTCSEEEEEEECC
T ss_pred CceeecC-CCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCC-cccccCHHHHHHHHhcCCCEEEEEEECC
Confidence 5555433 5569999999999999999999999999999999999999999 9999999999999999999999999987
Q ss_pred -ccCccceEEEE-------ecCCCceeEEEEeccCccHHHHhc-CCCCCCCCcCCCCCCCccceeeeEEehhhhHHHHhh
Q 007727 326 -AKEAIGGITRL-------THADGRSMVINVEYNQLDPLLRAT-GFPDGDVNCETGYSPFPGNINQLILELGPYMEELKK 396 (591)
Q Consensus 326 -~~e~vG~i~~~-------~~~dG~~~v~~VEYsel~~~l~~~-~~~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~ 396 (591)
+.|++|++|++ .+.||++++ +||+|+++..+.. +++ +||++| ||||+|+++.+|++++++
T Consensus 251 ~~dekgG~l~~~~~~~~~~~~~dG~~~v--vEyseip~e~~~~f~~~-------~g~~~F--NtnNi~~~l~~l~~~l~~ 319 (484)
T 3gue_A 251 ESDKKGGHLAYKDVIDETTGQTRRRFVL--RESAQCPKEDEDSFQNI-------AKHCFF--NTNNIWINLMELKKMMDE 319 (484)
T ss_dssp TTCCSSEEEEEEC--------CCCEEEE--EEGGGSCGGGHHHHTCT-------TTSCEE--EEEEEEEEHHHHHHHHHH
T ss_pred CCCCceeEEEEEccccccccCCCCCEEE--EEeccCCHHHHhhhcCC-------CCceEe--EeeeEEEEHHHHHHHHHh
Confidence 55677778875 245899877 9999999887653 333 356777 999999999999999988
Q ss_pred c--cCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChh
Q 007727 397 T--GGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSAT 474 (591)
Q Consensus 397 ~--~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~ 474 (591)
. ...||+|+|+|++|..+...++++|||+||||++++|+ ++++++|+| +||+||||++++ .
T Consensus 320 ~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~---~~~~ieV~R-~rF~PvKn~sdL-------------l 382 (484)
T 3gue_A 320 QLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFD---RSEAVVVPR-ERFAPVKTCSDL-------------L 382 (484)
T ss_dssp TTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSS---SEEEEECCG-GGCCCCSSHHHH-------------H
T ss_pred ccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCC---ccEEEEECh-hhccccccchHH-------------H
Confidence 6 34679999999998877778899999999999998874 567889999 899999999987 4
Q ss_pred hHHHHHHHHHHHHHHHcCCc-ccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCC-CCccCCCceEEEEeceEEe
Q 007727 475 SGEMAIYCANSLILRKAGAQ-VDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSG-SCSVSQKSTMVIKGRNVVL 552 (591)
Q Consensus 475 t~~~dl~~~~~~~l~~~G~~-v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~~~-~~~i~~~s~L~v~g~~~~~ 552 (591)
++|+|+|.+.. |+. +.++. .....|.|.|+|.+++++++|.+||++ +|+|+++++|+|+|||+||
T Consensus 383 ~~~Sdly~l~~------~~~l~~~~~-------~~~~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg 449 (484)
T 3gue_A 383 ALRSDAYQVTE------DQRLVLCEE-------RNGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFG 449 (484)
T ss_dssp HHHSTTEEECT------TSCEEECGG-------GTTCCCEEEECTTTSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEEC
T ss_pred HHhhhceeccC------CceEEeccc-------cCCCCCeEEECchhcCcHHHHHHhcCCCCCChhhCCEEEEecceEEC
Confidence 55555554442 222 22221 233579999999988999999999998 8999999999999999999
Q ss_pred eCeEEEEEEEEEeCCCCeEEecCCeEeeCC
Q 007727 553 EDLSLNGALIIDSVDDAEVCYIMPILRYGG 582 (591)
Q Consensus 553 ~~v~L~G~v~I~a~~~~~~~i~~~~~~~~~ 582 (591)
+||+|+|+|+|+|++|.+++||+|.|+.|.
T Consensus 450 ~~v~l~G~v~i~~~~g~~~~ip~g~~l~~~ 479 (484)
T 3gue_A 450 ADVSVRGNVVIKNLKEEPLIIGSGRVLDNE 479 (484)
T ss_dssp TTCEEEEEEEEEECSSSCEEECTTCEEESC
T ss_pred CCcEEEEEEEEEcCCCCeeecCCCCEecce
Confidence 999999999999999999999999999885
No 4
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=7.5e-91 Score=763.04 Aligned_cols=451 Identities=22% Similarity=0.315 Sum_probs=385.1
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhc-CCCCCccHHHHHHHHHHHHhhccCCCCCCCC-CCCCCC
Q 007727 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKL-NSSYPGGLKSYIKTARELLADSKAGKNPFDG-FTPSVP 115 (591)
Q Consensus 38 ~~~~l~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~i-d~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~-~~p~vp 115 (591)
...+|+++|.++||+|||++|++++ ++||++|++||.++ |+ .++..|++++.+ .+. ...+++ +.| +|
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~~~~l~--~~ek~~l~~ql~~~~d~---~~l~~~~~~~~~---~~~--~~~~~~~i~p-~p 73 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQYYDSLT--IDQQQEFIDQLSTIEEP---AKLISTVEQAIQ---FSQ--TNSTSRNFTQ-LP 73 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGGSC--HHHHHHHHHHHHTSSSH---HHHHHHHHHHHH---HTC------CCCEEC-CC
T ss_pred hHHHHHHHHHHcCcHHHhhhhccCC--HHHHHHHHHHHHhCcCH---HHHHHHHHHHHh---ccc--cccccccccC-CC
Confidence 4578999999999999999999964 99999999999999 85 357788888764 222 123343 544 78
Q ss_pred CcccccC---CCchhhHHHHHHHHhhc--ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhh
Q 007727 116 TGEVLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR 190 (591)
Q Consensus 116 ~~~~l~~---~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~ 190 (591)
++...++ +++.+.+|++.|+++|+ |+|+|+||||+|||||+++||+++||.+++++||||+++++|++++++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~ 153 (486)
T 2yqc_A 74 NEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQ 153 (486)
T ss_dssp GGGEEETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccCChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhh
Confidence 7765544 33567789999999996 899999999999999999999999998889999999999999999999854
Q ss_pred hccC--CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCC-ceecCCCCCCccccccCCCch
Q 007727 191 LAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDA-RLAMDPKNKYRIQTKPHGHGD 267 (591)
Q Consensus 191 ~~~g--~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g-~~~l~~~~~~~i~~~P~GhG~ 267 (591)
. +| +.+.||||||||++||+.|++||++|+|||++.++|+||+|+++||++ .+| ++++ ++++.++|+|+||||
T Consensus 154 ~-~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~-~dg~~i~l--~~~~~i~~~P~G~Gg 229 (486)
T 2yqc_A 154 Y-LKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFN-LQGNKILL--ELKNSICQSPDGNGG 229 (486)
T ss_dssp H-HTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBC-TTSSSBCE--EETTEECEEECCGGG
T ss_pred h-cCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEc-CCCCcccc--CCCCccccCcCCchH
Confidence 3 33 345899999999999999999999999999999999999999999996 589 9999 778899999999999
Q ss_pred hhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccC-cccCccceEEEEecCCCceeEE
Q 007727 268 VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVI 346 (591)
Q Consensus 268 i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~vG~i~~~~~~dG~~~v~ 346 (591)
+|.+|+++|+|++|+++|++|++|+|+||+|++++||.|+|||+.++++++++||+| .|.|++|++|.. ..||+.++
T Consensus 230 i~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~-~~dg~~~v- 307 (486)
T 2yqc_A 230 LYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLD-QDNQKPCV- 307 (486)
T ss_dssp HHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEE-TTTTEEEE-
T ss_pred HHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEE-ecCCCEEE-
Confidence 999999999999999999999999999999999999999999999999999999998 588999999864 24788766
Q ss_pred EEeccCccHHHHhcCCCC--CCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCc---cccccCCc---ccCCCCCc--
Q 007727 347 NVEYNQLDPLLRATGFPD--GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA---IKEFVNPK---YKDASKTS-- 416 (591)
Q Consensus 347 ~VEYsel~~~l~~~~~~~--g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~---l~~~vnpK---~~d~~~~~-- 416 (591)
|||+|++++++...+++ |.+. ++++|||||||++++|++++....+. ||+|+|+| |.|...+.
T Consensus 308 -vEy~E~~~~~~~~~~~~~~~~~~------~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~ 380 (486)
T 2yqc_A 308 -IEYSEISQELANKKDPQDSSKLF------LRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFY 380 (486)
T ss_dssp -ECGGGSCHHHHHCEETTEEEEES------SCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCEE
T ss_pred -EEEecCCHHHhhccccccccccc------ccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCccccccCeec
Confidence 99999999988766544 4333 45789999999999999977765566 99999998 77754322
Q ss_pred ---ccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCC
Q 007727 417 ---FKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGA 493 (591)
Q Consensus 417 ---~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~ 493 (591)
.++++|||+||||++.+++. .++++++|+|++|||||||+++.+ .|||.|||.|||++|++||++||+
T Consensus 381 ~p~~pn~~klE~~~~d~~~~~~l-~~~~~~~V~R~~~FsPvKn~~~~~--------~dsp~ta~~~l~~~~~~~l~~aG~ 451 (486)
T 2yqc_A 381 KPTEPNGIKLEQFIFDVFPSVEL-NKFGCLEVDRLDEFSPLKNADGAK--------NDTPTTCRNHYLERSSKWVIQNGG 451 (486)
T ss_dssp CCSSCCEEEEECCGGGGGGGSCG-GGEEEEEECHHHHCCBCCSCTTSS--------SSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCeeeeeehHhhHHhhccc-CceEEEEECcccceeeecCCCCCC--------CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34568999999999877631 277899999999999999998864 799999999999999999999999
Q ss_pred cccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhc
Q 007727 494 QVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKV 531 (591)
Q Consensus 494 ~v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~ 531 (591)
.+.+. ..++++|+|+|. |+.++.+++|.
T Consensus 452 ~~~~~-------~~~eisp~~sy~---ge~l~~~~~~~ 479 (486)
T 2yqc_A 452 VIDNQ-------GLVEVDSKTSYG---GEGLEFVNGKH 479 (486)
T ss_dssp EECTT-------CCCBCCTTTCSS---STTCGGGTTCE
T ss_pred eecCC-------CcEEEcceeeEC---CCCchhhcCcc
Confidence 98643 358899999999 77777665543
No 5
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=1.1e-86 Score=732.54 Aligned_cols=459 Identities=22% Similarity=0.310 Sum_probs=384.5
Q ss_pred HHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 007727 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (591)
Q Consensus 39 ~~~l~~~L~~~gQ~Hll~~~~~l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~ 118 (591)
..+|+++|.++||+|||++|++++ ++||++|++||.++|.. ++..|++++.+.+..|+++....+.+.| +|++.
T Consensus 3 ~~~l~~~l~~~gQ~hl~~~~~~l~--~~ek~~l~~ql~~~d~~---~~~~~~~~~~~~~~~s~~~~~~~~~i~p-~p~~~ 76 (505)
T 1jv1_A 3 INDLKLTLSKAGQEHLLRFWNELE--EAQQVELYAELQAMNFE---ELNFFFQKAIEGFNQSSHQKNVDARMEP-VPREV 76 (505)
T ss_dssp HHHHHHHHHHTTCGGGGTTGGGSC--HHHHHHHHHHHHTCCHH---HHHHHHHHHHHCC-----------CCBC-CCGGG
T ss_pred HHHHHHHHHHcCcHHHHhhhhcCC--HHHHHHHHHHHHHhCHH---HHHHHHHHHHHhhhhccccCcccccccC-CChHh
Confidence 466999999999999999999964 99999999999999964 5777888776654443322222345655 68776
Q ss_pred cccC--CCchhhHHHHHHHHhhc--ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccC
Q 007727 119 VLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEG 194 (591)
Q Consensus 119 ~l~~--~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g 194 (591)
..++ +.+++.+|++.|+++|+ |+|+|+||||+|||||+++||+++|+++++++||||+++++|+++|+++.+. +|
T Consensus 77 ~~~~~~~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~-~G 155 (505)
T 1jv1_A 77 LGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKY-YG 155 (505)
T ss_dssp EEETTTTGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHH-HS
T ss_pred cccccCChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHh-cC
Confidence 6655 34567789999999985 9999999999999999999999999999999999999999999999887543 45
Q ss_pred CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhh
Q 007727 195 KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYS 274 (591)
Q Consensus 195 ~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~ 274 (591)
..+.+||+||||+.||+.|++||++|+|||+++++|++|+|+++||++ .+|++++ ++++.++|+|+||||+|.+|++
T Consensus 156 ~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~-~~g~~~l--~~~~~~e~~P~GtGG~~~~L~~ 232 (505)
T 1jv1_A 156 NKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMS-FDGKIIL--EEKNKVSMAPDGNGGLYRALAA 232 (505)
T ss_dssp SCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEE-TTSCBCE--EETTEECEEECCGGGHHHHHHH
T ss_pred CCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEc-CCCcccc--cCCcccccCCCCchHHHHHHHH
Confidence 445899999999999999999999999999999999999999999997 5899999 7788999999999999999999
Q ss_pred cChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccC-cccCccceEEEEecCCCceeEEEEeccCc
Q 007727 275 SGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQL 353 (591)
Q Consensus 275 sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~vG~i~~~~~~dG~~~v~~VEYsel 353 (591)
+|+|++|+++|++|++|+|+||+|++++||.|+||++.++++++++|++| .+.+++|++|.. ||+.++ |||+|+
T Consensus 233 sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~---dg~~~v--vEy~E~ 307 (505)
T 1jv1_A 233 QNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV---DGVYQV--VEYSEI 307 (505)
T ss_dssp TTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGS
T ss_pred cCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEE---CCeEEE--EEEeeC
Confidence 99999999999999999999999999999999999999999999999985 688999999875 898866 999999
Q ss_pred cHHHHhcCCCCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCc---ccCCCCCc----ccCcchhhhh
Q 007727 354 DPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTS----FKSSTRLECM 426 (591)
Q Consensus 354 ~~~l~~~~~~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK---~~d~~~~~----~~~~~klE~~ 426 (591)
+++.+..++++|.+. | .++|||||||++++++++.+...+.||+|+|+| |.|.++.. .++.+|||+|
T Consensus 308 p~~~~~~~~~~g~~~----~--~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~ 381 (505)
T 1jv1_A 308 SLATAQKRSSDGRLL----F--NAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKF 381 (505)
T ss_dssp CHHHHHCBCTTSSBS----S--CEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECC
T ss_pred CHHHhhhcccccccc----c--ceeeEEEEEecHHHHHHHHHhhcccCCceecccccccccCCCCCcCCCCCCceeHHHH
Confidence 999888877766554 3 377999999999999998876667899999998 66643321 2345799999
Q ss_pred hccccccCCCCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcc-cCCcc-----
Q 007727 427 MQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQV-DDPVQ----- 500 (591)
Q Consensus 427 i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v-~~~~~----- 500 (591)
|||++.+| .++++++|+|++||+||||+++.+ | .|||.|||.|||++|++||++||+.+ ++...
T Consensus 382 i~d~~~~~---~~~~~~~V~R~~~FsPvKn~~~~~-----~--~dsp~ta~~~l~~~~~~~l~~ag~~~~~~~~~~~~~~ 451 (505)
T 1jv1_A 382 VFDIFQFA---KKFVVYEVLREDEFSPLKNADSQN-----G--KDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAI 451 (505)
T ss_dssp GGGGGGGC---SSEEEEEECHHHHCCBCCSCTTSS-----S--SSSHHHHHHHHHHHHHHHHHHTTCEEBCTTCCBCCSS
T ss_pred HHHHHhhc---CceEEEEECcccceeeccCCCCCC-----C--CCCHHHHHHHHHHHHHHHHHHCCCeeccccccccccc
Confidence 99998776 467889999988999999999862 1 69999999999999999999999998 33200
Q ss_pred -----cccCCeeecCCCeEEEcCCCCCCHHHH-hhhc
Q 007727 501 -----EVFNGQEVEVWPRLTWKPKWGLTFSEI-KNKV 531 (591)
Q Consensus 501 -----~~~~~~~~~~~P~v~l~p~f~~~~~~~-~~k~ 531 (591)
.......++++|+|+|. |+.++++ +.|.
T Consensus 452 ~~~~~~~~~~~~~Eisp~~sy~---ge~l~~~~~~~~ 485 (505)
T 1jv1_A 452 PRLKDANDVPIQCEISPLISYA---GEGLESYVADKE 485 (505)
T ss_dssp CCCCSTTCCCCCEEECTTTCSS---SCSCHHHHTTCE
T ss_pred ccccccccCCCeEEECCccccC---CCCchHHhcCCc
Confidence 00011247888999988 7888877 4443
No 6
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=1.1e-87 Score=737.36 Aligned_cols=435 Identities=17% Similarity=0.183 Sum_probs=369.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHHHHHHHHhhcceEEEEEcCCcCccCCccCccccccc
Q 007727 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPA 165 (591)
Q Consensus 86 l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lpv 165 (591)
+..|...+.++++.+ .+..+|+.+.|+ +...++.+.. . ..|+++|+|+|||+||||+|||||+++||+++||
T Consensus 29 ~~~f~~~~~~~~~~~-~~~i~~~~i~p~---~~~~~~~~~~--~--~~g~~~l~k~avViLAGGlGTRLg~~~PK~llpV 100 (505)
T 2oeg_A 29 IRTFIAQHVMVSKGE-TGSIPDSAIMPV---DSLDALDSLT--I--ECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEV 100 (505)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCGGGCBCC---CCCCBGGGCC--C--CCCHHHHHTEEEEEEECCCCGGGTCCSCGGGSEE
T ss_pred HHHHHHHHHHHHhcC-CCCcChhhcCCh---hhccChhhcc--h--hHHHHHHhcceEEEEcCCcccccCCCCCCccccc
Confidence 456666777777553 345677888763 3444443322 1 3799999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH-hCCCCCCCCCcEEEEEecceeEEecC
Q 007727 166 ETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE-SNSYFGMKPTQVKLLKQEKVACLDDN 244 (591)
Q Consensus 166 ~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~-~~~~FGl~~~~V~~F~Q~~~P~l~~~ 244 (591)
+ +++||||+++++|++++.+|+ +.|||+||||+.||+.|++||+ +|++||+++++|++|+|+++||++.+
T Consensus 101 ~--~gk~fLe~~ie~l~~~~~~~g-------~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~ 171 (505)
T 2oeg_A 101 K--DGKTFLDFTALQVQYLRQHCS-------EHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQD 171 (505)
T ss_dssp E--TTEEHHHHHHHHHHHHHHHTC-------TTCEEEEEECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETT
T ss_pred C--CCCcHHHHHHHHHHHHHHhcC-------CCcCEEEEeCCCCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeEecC
Confidence 5 799999999999999999986 4899999999999999999999 99999999999999999999999876
Q ss_pred CCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccC
Q 007727 245 DARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR 324 (591)
Q Consensus 245 ~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r 324 (591)
+++++.+ +++..++|+|+||||+|.+|++||+|++|+++|++|++|+|+|| |++++||.|+||+.+++++++++|++|
T Consensus 172 ~~~~i~~-~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DN-L~~~~D~~llg~~~~~~ad~~~~v~~k 249 (505)
T 2oeg_A 172 TLEPAAW-AENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDN-LGATIDKRVLAYMEKEKIDFLMEVCRR 249 (505)
T ss_dssp TCCBCCC-TTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTC-TTCCCCHHHHHHHHHHTCSEEEEEEEC
T ss_pred CCceeec-CCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCc-cccccCHHHHHHHHhcCCcEEEEEEEe
Confidence 6687733 34446999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred ccc-CccceEEEEec-----CCCc-------eeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCc-cceeeeEEehhhh
Q 007727 325 KAK-EAIGGITRLTH-----ADGR-------SMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP-GNINQLILELGPY 390 (591)
Q Consensus 325 ~~~-e~vG~i~~~~~-----~dG~-------~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~-gNinn~~~~l~~l 390 (591)
+.. ++.|+++. ++ .||+ +.+ +||+|+++..... ++|.+.|+ ||||||||++++|
T Consensus 250 ~~~d~~~Gvl~~-~~~~~~~~dg~~nvEyn~~~l--lEyse~p~e~~~~---------~~g~~~f~~~Ninn~~~~l~~l 317 (505)
T 2oeg_A 250 TESDKKGGHLAR-QTVYVKGKDGQPDAEKRVLLL--RESAQCPKADMES---------FQDINKYSFFNTNNLWIRLPVL 317 (505)
T ss_dssp CTTCCSSEEEEE-EEEEECCSSSCCCEEEEEEEE--EEGGGSCGGGHHH---------HHCTTTTCEEEEEEEEEEHHHH
T ss_pred cCCccceeEEEE-ecccccccCCccccccCceeE--EEeccCChhhhhc---------ccCccccCeeEEEEEEEEHHHH
Confidence 765 56665554 33 6898 554 7777776664432 33444455 7999999999999
Q ss_pred HHHHhhcc--CccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCcccccCCCCC
Q 007727 391 MEELKKTG--GAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGN 468 (591)
Q Consensus 391 ~~~l~~~~--~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~ 468 (591)
+++++.+. ..||+|+|+|+.|..++..++++||||||||++++|++ +++++|+|+ ||+||||+++
T Consensus 318 ~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~---~~~~~V~R~-~FsPvKn~~d--------- 384 (505)
T 2oeg_A 318 LETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFES---ASAIVVPRS-RFAPVKTCAD--------- 384 (505)
T ss_dssp HHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTT---CEEEECCGG-GCCCCSSHHH---------
T ss_pred HHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCc---ceEEEeccc-eeecccCCCC---------
Confidence 99998743 45799999999886666677899999999999999853 578899997 9999999654
Q ss_pred CCCChhhHHHHHHHHHH--HHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCC-CCccCCCceEEE
Q 007727 469 PYHSATSGEMAIYCANS--LILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSG-SCSVSQKSTMVI 545 (591)
Q Consensus 469 ~~dsp~t~~~dl~~~~~--~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~~~-~~~i~~~s~L~v 545 (591)
+.++|+|+|.+++ +|+. +|.++ ..+|.|.|+|.|++++++|++||++ +|+|+++|+|+|
T Consensus 385 ----l~~~~sdly~~~~~~~~~~-~~~~~-------------~~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v 446 (505)
T 2oeg_A 385 ----LLALRSDAYVVTDDFRLVL-DDRCH-------------GHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTV 446 (505)
T ss_dssp ----HHHHHSTTEEECTTCCEEE-CGGGT-------------TCCCEEEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEE
T ss_pred ----HHHHHHHHHhhcCCceEEE-ccccc-------------CcCCeEEEChhHcCcHHHHHHhcCCCCCccccCcEEEE
Confidence 5899999999987 5765 44432 2478999999999999999999998 699999999999
Q ss_pred EeceEEeeCeEEEEEEEEEeC-CCCeEEecCCeEeeCC
Q 007727 546 KGRNVVLEDLSLNGALIIDSV-DDAEVCYIMPILRYGG 582 (591)
Q Consensus 546 ~g~~~~~~~v~L~G~v~I~a~-~~~~~~i~~~~~~~~~ 582 (591)
+|+++||+||+|+|+|+|+|+ +|.+++||+|.+..|+
T Consensus 447 ~G~~~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l~n~ 484 (505)
T 2oeg_A 447 KGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDT 484 (505)
T ss_dssp ESSEECCTTCEEEEEEEEECCSCSSCEECCTTCEEESC
T ss_pred EcceEEccCcEEEEEEEEEecCCCCcEEeCCCCEEeCc
Confidence 999999999999999999999 9999999999888776
No 7
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=3.1e-84 Score=691.04 Aligned_cols=369 Identities=21% Similarity=0.277 Sum_probs=327.4
Q ss_pred hhhHHHHHHHHhhc--ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEE
Q 007727 126 TFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAI 203 (591)
Q Consensus 126 ~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~I 203 (591)
...+|++.|+++|+ |+|||+||||||||||+++||+++||++++++||||+++++|+++|+++.+..+|..+.|||||
T Consensus 19 ~~~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~I 98 (405)
T 3oc9_A 19 VTKEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFL 98 (405)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEE
T ss_pred ccHHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEE
Confidence 33689999999996 9999999999999999999999999999999999999999999999987643234446899999
Q ss_pred ecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHH
Q 007727 204 MTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD 283 (591)
Q Consensus 204 MTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~ 283 (591)
|||+.||++|++||++|+|||+++++|++|+|+++||+ +.+|++++ +++++++|+|+||||+|.+|+++|+|++|++
T Consensus 99 MtS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i-~~dg~i~l--~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~ 175 (405)
T 3oc9_A 99 MTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV-DFNGKILY--EKKDKPYMAPNGHGGLFKALKDNGILEFMNE 175 (405)
T ss_dssp EECTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECB-CTTSCBCE--EETTEECEEECCGGGHHHHHHHTTHHHHHHH
T ss_pred EeCCccHHHHHHHHHhCcccCCCccceEEEeeCceeEE-ecCCCeec--CCCCccccccCCChHHHHHHHHCCcHHHHHh
Confidence 99999999999999999999999999999999999999 57899999 7788999999999999999999999999999
Q ss_pred cCceEEEEEeCCCccccccchHHHHHHhhcCCcceeeeccCc-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCC
Q 007727 284 AGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGF 362 (591)
Q Consensus 284 ~G~eyi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~ 362 (591)
+|+||+||+||||+|++++||.|+|||++++++|++|||+|+ |+|++|++|++ ||+++| |||+|++++ +..++
T Consensus 176 ~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~---dg~~~v--vEysei~~e-~e~~~ 249 (405)
T 3oc9_A 176 KGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKE---QERIKV--VEYTELTDE-LNKQL 249 (405)
T ss_dssp HTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGCCTT-TTCBC
T ss_pred cCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEE---CCeeEE--EEEeeCCHH-HhhcC
Confidence 999999999999999999999999999999999999999986 77999999976 999877 999999999 77777
Q ss_pred CCCCCCcCCCCCCCccceeeeEEehhhhHHHHhhccCccccccCCc---ccCCCCC----cccCcchhhhhhccccccCC
Q 007727 363 PDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKT----SFKSSTRLECMMQDYPKTLP 435 (591)
Q Consensus 363 ~~g~l~~~~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK---~~d~~~~----~~~~~~klE~~i~D~~~~f~ 435 (591)
++|++. +.++||+||+|++++|++++ ...||.|++.| |.|..+. +..+++|||+||||+++++
T Consensus 250 ~~g~l~------fn~~Ni~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~- 319 (405)
T 3oc9_A 250 SNGEFI------YNCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLA- 319 (405)
T ss_dssp TTSCBS------SCEEEEEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGC-
T ss_pred CCCcee------eccceeEeeecCHHHHHHhh---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhc-
Confidence 777665 33789999999999999987 34689999877 4464432 2346789999999997775
Q ss_pred CCCceeEEEecccceeeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEE
Q 007727 436 PSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLT 515 (591)
Q Consensus 436 ~~~~~~~~~v~R~~~FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~ 515 (591)
.++.+++|+|++||+||||+++.+ .|||.|||+|++++|++|++++|+.+.+.. ...++++|+++
T Consensus 320 --~~~~~~eV~R~~eF~PlKn~~g~~--------~dsp~tar~~l~~~~~~wl~~ag~~~~~~~-----~~~~Eispl~s 384 (405)
T 3oc9_A 320 --TKVSIFEIQRFIEFSALKNSLNES--------FDNVNTVKRDWYRLNIYYLKKAGAIVDDSK-----SPICEISFRKS 384 (405)
T ss_dssp --SCEEEEECCHHHHCCBCCCCTTSS--------SSSHHHHHHHHHHHHHHHHHHTTCEEECSS-----CCCEEECTTTC
T ss_pred --cceEEEEEChHhcccceecCCCCC--------CCCHHHHHHHHHHHHHHHHHHCCCEEcCCC-----CccEEeCcccc
Confidence 567889999999999999999864 799999999999999999999999996432 13578889999
Q ss_pred EcCCCCCCHHHHhhhc
Q 007727 516 WKPKWGLTFSEIKNKV 531 (591)
Q Consensus 516 l~p~f~~~~~~~~~k~ 531 (591)
|+ |+.++.++.|.
T Consensus 385 y~---ge~l~~~~~~~ 397 (405)
T 3oc9_A 385 FE---EEGLKEFKGKT 397 (405)
T ss_dssp SS---SGGGGGGTTCE
T ss_pred cC---ccCccccCCcE
Confidence 98 87787766554
No 8
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=2.8e-81 Score=683.59 Aligned_cols=452 Identities=16% Similarity=0.164 Sum_probs=372.4
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchh-hHHHHHHHHhhcceEEEE
Q 007727 67 EKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTF-INYEQAGVKEAKNAAFVL 145 (591)
Q Consensus 67 e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~-~~~~~~G~~~l~kvavv~ 145 (591)
+..+|...+..-+....-.+..|...++++++.+ ....+|+.+.| +|++...++++... .++++.|+++++|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~i~p-~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vvi 84 (469)
T 2icy_A 7 NLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGE-AQHIEWSKIQT-PTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLK 84 (469)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHC-------CCGGGCBC-CCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEE
T ss_pred HHHHHHhhcCchhccchhhHHHHHHHHHHHHhcc-CCCCccccccc-CCcccccChhhcccchhhHHHHHHhhccceEEE
Confidence 4455655555333332223456666777766543 23568888887 68777777655332 456778999999999999
Q ss_pred EcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCC
Q 007727 146 VAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGM 225 (591)
Q Consensus 146 LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl 225 (591)
||||+|||||++.||+++|+ .+++||||+++++|++++.+|+ +.|||+||||+.||+.|++||++|++||+
T Consensus 85 LAGGlGTRLg~~~PK~llpv--~~gkp~Le~~i~~l~~~~~~~G-------~~ip~vimts~~t~e~t~~~f~~~~~fG~ 155 (469)
T 2icy_A 85 LNGGLGTTMGCTGPKSVIEV--RDGLTFLDLIVIQIENLNNKYG-------CKVPLVLMNSFNTHDDTHKIVEKYTNSNV 155 (469)
T ss_dssp EECCBSGGGTCCSBGGGSEE--ETTEEHHHHHHHHHHHHHHHHS-------CCCCEEEEECTTTHHHHHHHHGGGTTSSS
T ss_pred EcCCccccCCCCCCcccccc--CCCCCHHHHHHHHHHHHHHhcC-------CCccEEEEeCCCCHHHHHHHHHhcccCCc
Confidence 99999999999999999999 4799999999999999998886 47999999999999999999999999998
Q ss_pred CCCcEEEEEecceeEEecCCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccch
Q 007727 226 KPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP 304 (591)
Q Consensus 226 ~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~~~Dp 304 (591)
+|++|+|+++||++. +|++++. +.+++.++|+|+||||+|.+|+++|++++|+++|++|++|+|+|| |++.+||
T Consensus 156 ---~I~~f~Q~~~P~i~~-e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~Dn-L~~~~d~ 230 (469)
T 2icy_A 156 ---DIHTFNQSKYPRVVA-DEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDL 230 (469)
T ss_dssp ---CEEEEECCCEECEET-TTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTB-TTCCCCH
T ss_pred ---eEEEEEecceeeEcc-ccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCc-CCcccCH
Confidence 799999999999974 7888883 334478999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHhhcCCcceeeeccCc-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccceeee
Q 007727 305 ASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQL 383 (591)
Q Consensus 305 ~~lG~~~~~~~~~~~kvv~r~-~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gNinn~ 383 (591)
.|+|||.+++++++++|++|+ |.++.|++|.. ||+..+ +||+|++....... .+...|++| |||||
T Consensus 231 ~ll~~~~~~~a~~t~~v~~k~~~~~~~Gvl~~~---dg~~~v--vE~~e~p~~~~~e~------k~~~~~~~~--N~g~y 297 (469)
T 2icy_A 231 TILKHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEF------KSIEKFKIF--NTNNL 297 (469)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEE---TTEEEE--ECGGGSCGGGHHHH------HSSSSCCEE--EEEEE
T ss_pred HHHHHHHHcCCCeeEEEEEeccCCCceeEEEEE---CCEEEE--EEEeccChhhhhhh------cccccccee--eEEEE
Confidence 999999999999999999986 66899998864 888766 99999987643220 011236655 99999
Q ss_pred EEehhhhHHHHhhccCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccccCCccccc
Q 007727 384 ILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAK 463 (591)
Q Consensus 384 ~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~FsPvKN~~~~~~~ 463 (591)
||++++|+++++.....||.|+|||+.|+ .+++|||+||||++.+|++ +..++|+|+ ||+||||+++.
T Consensus 298 ~~~~~~L~~i~~~~~~~lp~~v~~K~id~-----~~~~klE~~~~D~~~~~~~---~~~~~V~R~-~F~PvKn~~dl--- 365 (469)
T 2icy_A 298 WVNLKAIKKLVEADALKMEIIPNPKEVDG-----VKVLQLETAAGAAIRFFDN---AIGVNVPRS-RFLPVKASSDL--- 365 (469)
T ss_dssp EEEHHHHHHHHHTTCCCCCCBCCEEEETT-----EEEECCBCCGGGGGGGSTT---CEEEECCGG-GCCBCCSHHHH---
T ss_pred EEcHHHHHHHHhcccCCchhhccceecCC-----CceEeehHhhHHHHHhcCC---eEEEEechh-HcCcCCCHHHH---
Confidence 99999999998877778999999999971 4689999999999988853 344589995 89999997754
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceE
Q 007727 464 VPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTM 543 (591)
Q Consensus 464 ~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k~~~~~~i~~~s~L 543 (591)
.++++|+ |...+|..+.++. +.++..|+|+|+|+| +++++|.+||+++|+|.++|||
T Consensus 366 ----------l~~~s~l------~~~~~g~~~~~~~------~~~~~~P~v~l~~~~-~~v~~f~~rf~~~p~~~~~~~l 422 (469)
T 2icy_A 366 ----------LLVQSDL------YTLVDGFVTRNKA------RTNPSNPSIELGPEF-KKVATFLSRFKSIPSIVELDSL 422 (469)
T ss_dssp ----------HHHHSTT------EEEETTEEEECTT------CCSSSCCEEEECGGG-CSHHHHHHTBSSCCBCTTEEEE
T ss_pred ----------HHHHHHH------HHHhcCcEEecCc------ccCCCCCeEEcChhh-hhHHHHHHhcCCCcccccCCeE
Confidence 3444443 4444455443332 247789999999995 6999999999999999999999
Q ss_pred EEEeceEEeeCeEEEEEEEEEeCCCCeEEecCCeEeeCC
Q 007727 544 VIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGG 582 (591)
Q Consensus 544 ~v~g~~~~~~~v~L~G~v~I~a~~~~~~~i~~~~~~~~~ 582 (591)
+|+|||+||+||+|+|+|+|+|++|.+++||+|.+..|+
T Consensus 423 ~v~gdv~fg~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~ 461 (469)
T 2icy_A 423 KVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENK 461 (469)
T ss_dssp EEESEEEECSSCEEEEEEEEECCTTCEEEECTTCEEESC
T ss_pred EEEeeeEEcCCcEEEEEEEEEcCCCCeeecCCCCEeecc
Confidence 999999999999999999999999999999999999886
No 9
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-79 Score=672.35 Aligned_cols=460 Identities=18% Similarity=0.178 Sum_probs=371.8
Q ss_pred cccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCCcccccCCCchhhHHHH
Q 007727 54 LFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQ 132 (591)
Q Consensus 54 ll~~~~~l~~~~~e~~~Ll~qL~~id~~~~~~l~~~~~~~~~~l~~-s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~ 132 (591)
|-+.|+.+..+++||++|.+||..++ ..++++++. +..+..+|+.+.| +|++...++.+.. .++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~~--~~~- 84 (488)
T 2i5k_A 20 LNKLADSSKLDDAARAKFENELDSFF-----------TLFRRYLVEKSSRTTLEWDKIKS-PNPDEVVKYEIIS--QQP- 84 (488)
T ss_dssp TTCCC--------CCSCTHHHHHHHH-----------HHHHHHHHHHHSCCSCCGGGEEC-CCTTTEEEHHHHH--SSC-
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH-----------HHHHHHHhcccccCCCccccccc-CChhcccChhhcc--cch-
Confidence 44556554322678888999998654 233444433 3345678888887 5776666654321 111
Q ss_pred HHHHhhcceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 007727 133 AGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (591)
Q Consensus 133 ~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~ 212 (591)
.|+.+++|+|||+||||+|||||++.||+++|+ .+|+||||++++++++++..++ +.|||+||||++||+.
T Consensus 85 ~~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V--~~gk~~Le~~i~~i~~l~~~~G-------~~Ip~vImts~~t~e~ 155 (488)
T 2i5k_A 85 ENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSVRQIEYLNRQYD-------SDVPLLLMNSFNTDKD 155 (488)
T ss_dssp CCSTTGGGEEEEEECCCBSGGGTCCSBSTTSCC--BTTBCHHHHHHHHHHHHHHHHT-------CCCEEEEECCTTTHHH
T ss_pred hhhhhcCCceEEEEcCCCcccCCCCCCcccccc--CCCCcHHHHHHHHHHHhHHhcC-------CCccEEEEECCCCHHH
Confidence 378888899999999999999999999999999 5799999999999999988876 4799999999999999
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEE
Q 007727 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLF 291 (591)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v 291 (591)
|++||++|++||+ +|++|.|+++||++ .+|++++. +.++++++|+|+|||++|.+|+.+|++++|.++|++|++|
T Consensus 156 t~~~~~~~~~fg~---~i~~f~Q~~~P~i~-~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V 231 (488)
T 2i5k_A 156 TEHLIKKYSANRI---RIRSFNQSRFPRVY-KDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFV 231 (488)
T ss_dssp HHHHHGGGCSSSC---EEEEECCCCEECEE-TTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEE
T ss_pred HHHHHHhccccCc---eEEEEEeCccceEc-cccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEE
Confidence 9999999999997 69999999999997 58888883 2234579999999999999999999999999999999999
Q ss_pred EeCCCccccccchHHHHHHhhcCCcceeeeccC-cccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcC
Q 007727 292 FQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (591)
Q Consensus 292 ~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (591)
+|+|| |++.+||.++|||..++++++++++++ .|.++.|++++. +|+..+ |||+|++++.+.... +.
T Consensus 232 ~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~---dG~~~i--VE~~e~~~e~~~~~~--~~---- 299 (488)
T 2i5k_A 232 SNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISY---DGQVRL--LEVAQVPKEHIDEFK--NI---- 299 (488)
T ss_dssp ECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE---TTEEEE--ECGGGSCTTSHHHHT--CT----
T ss_pred EeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecCCCCceeEEEEE---CCcEEE--EEeccCCHHHHhhcc--cc----
Confidence 99999 999999999999999999999999997 588899998864 888555 999999887654332 11
Q ss_pred CCCCCCccceeeeEEehhhhHHHHhhccCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccce
Q 007727 371 TGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLA 450 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l~~~~~~l~~~vnpK~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~~ 450 (591)
.+|+.| ||||+||++++|+++++.....||.|+|+|+.+. .....+++||||||||++++|+. ...++|+|+ |
T Consensus 300 ~~~~~~--Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~~~~~~~~qlE~~~~d~~~~~~~---~~~~~V~R~-~ 372 (488)
T 2i5k_A 300 RKFTNF--NTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-DGHEINVLQLETACGAAIRHFDG---AHGVVVPRS-R 372 (488)
T ss_dssp TTCCEE--EEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC------CEECCBCCGGGGGGGSSS---CEEEEECGG-G
T ss_pred cccCEE--EEEEEEEeHHHHHHHHhhccCCCcceecCccccC-CCCCCceEEeeehhhhHHhhccC---ceEEEeccc-c
Confidence 236655 9999999999999999887788999999998752 12234789999999999999853 345689996 8
Q ss_pred eeccccCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhh
Q 007727 451 YAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNK 530 (591)
Q Consensus 451 FsPvKN~~~~~~~~~~~~~~dsp~t~~~dl~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~P~v~l~p~f~~~~~~~~~k 530 (591)
|+||||++++ .+++++ +|...+|..+.++. .++.+|+|+|+|.| .++++|.+|
T Consensus 373 F~PvKn~~~l-------------l~~~~~------~~~~~~g~~~~~~~-------~~e~~P~v~~~~~~-~~~~~~~~r 425 (488)
T 2i5k_A 373 FLPVKTCSDL-------------LLVKSD------LFRLEHGSLKLDPS-------RFGPNPLIKLGSHF-KKVSGFNAR 425 (488)
T ss_dssp CCBCCSHHHH-------------HHHTST------TEEEETTEEEECTT-------CCSSCCEEEECGGG-SSHHHHHHH
T ss_pred cccccCCccH-------------HHHHHH------HHHHhcCcEeecCC-------cCCCCCeEEECCcc-cchhhHHhh
Confidence 9999998764 444444 44444676654432 27789999999996 589999999
Q ss_pred cCCCCccCCCceEEEEeceEEeeCeEEEEEEEEEeCCCCeEEecCCeEeeCCee---eee
Q 007727 531 VSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGGQS---CKI 587 (591)
Q Consensus 531 ~~~~~~i~~~s~L~v~g~~~~~~~v~L~G~v~I~a~~~~~~~i~~~~~~~~~~~---~~~ 587 (591)
|+++|+|.++++|+|+|||+||+||+|+|+|+|+|++|.+++||+|.+..|+-- +|+
T Consensus 426 f~~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 426 IPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp CSSCCBCTTEEEEEEESSEEECTTCEEEEEEEEECCTTCCEEECTTCEEEEEEEEEEEEE
T ss_pred cCCCccccccceEEEEeeeEEcCCcEEEEEEEEEcCCCCeEEeCCCCEEecceeeccccc
Confidence 999999999999999999999999999999999999999999999988777632 655
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.55 E-value=6.7e-06 Score=90.20 Aligned_cols=190 Identities=19% Similarity=0.227 Sum_probs=122.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
.+|||+||||.||||....||.++|+ .+++++++.++.+..+ + .--++|.++ ...+..+++|.+
T Consensus 12 ~~~vvILAaG~GtRm~~~~pK~l~pv---~gkp~i~~~l~~~~~~----g--------~~~i~vv~~-~~~~~i~~~~~~ 75 (501)
T 3st8_A 12 DTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAKL----A--------PQRLIVVLG-HDHQRIAPLVGE 75 (501)
T ss_dssp CEEEEEEECSCCGGGCCSSCGGGCEE---TTEEHHHHHHHHHHHH----C--------CSEEEEEEC-TTHHHHHHHHHH
T ss_pred CceEEEECCcCcccCCCCCCHHHeEE---CChhHHHHHHHHHHhC----C--------CCEEEEEeC-CCHHHHHHHHHH
Confidence 68999999999999999999999998 7999999999988663 2 223566666 456789999986
Q ss_pred C-CCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchh-hHHHhhcChHHHHHHcCceEEEEEeCCCc
Q 007727 220 N-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (591)
Q Consensus 220 ~-~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i-~~aL~~sG~l~~l~~~G~eyi~v~~vDN~ 297 (591)
. +.||. +|.+..|. .|-|-|+- +.++. .+.+.-..++.+.+-|.+
T Consensus 76 ~~~~~~~---~i~~~~q~------------------------~~lGTa~Av~~a~~------~l~~~~~~~~lvl~gd~~ 122 (501)
T 3st8_A 76 LADTLGR---TIDVALQD------------------------RPLGTGHAVLCGLS------ALPDDYAGNVVVTSGDTP 122 (501)
T ss_dssp HHHHHTS---CCEEEECS------------------------SCCCHHHHHHHHHT------TSCTTCCSEEEEEETTCT
T ss_pred HHHhcCC---cEEEEEcC------------------------CCCCcHHHHHHHHH------HhccccccceeeecCcce
Confidence 3 34443 35554442 13355543 33321 122233456777777876
Q ss_pred cccccc-hHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCC
Q 007727 298 LLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (591)
Q Consensus 298 L~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f 376 (591)
|...-+ -.++-++..+++++.+.+++-.....-|.+.+ +.+|+.. ..||..+-++.... ..
T Consensus 123 l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~--~~~g~v~-~ivEk~~~~~~~~~---------------i~ 184 (501)
T 3st8_A 123 LLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILR--TQDHEVM-AIVEQTDATPSQRE---------------IR 184 (501)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCEE-EEECGGGCCHHHHH---------------CC
T ss_pred eecHHHHHHHHHHHhhccccceEeeeccCCchhcccccc--ccceeEE-eeccccCCChhhcc---------------ce
Confidence 754422 34577788888888877776433344576653 5567653 22676555443211 11
Q ss_pred ccceeeeEEehhhhHHHHhh
Q 007727 377 PGNINQLILELGPYMEELKK 396 (591)
Q Consensus 377 ~gNinn~~~~l~~l~~~l~~ 396 (591)
-.|+....|+-+.+.+.+.+
T Consensus 185 ~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 185 EVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp EEEEEEEEEEHHHHHHHHTT
T ss_pred eeeceeeeecchhHHHhhhh
Confidence 24999999999888777653
No 11
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.97 E-value=0.00019 Score=71.98 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=108.6
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
++.+|+||||.||||+- ..||.++|+ .|++++++.++++.+. + .-.++|.|.....+.+.++
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i---~g~pli~~~l~~l~~~----g--------~~~iivv~~~~~~~~~~~~ 88 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKHLLPV---GRYPMIYHAVYKLKQC----D--------ITDIMIITGKEHMGDVVSF 88 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGGGSEE---TTEEHHHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHH
T ss_pred CcEEEEECCCCccccccccCCCCceecEE---CCEEHHHHHHHHHHHC----C--------CCEEEEECChhhHHHHHHH
Confidence 57889999999999986 889999998 6999999999998652 1 1245677766555778888
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 007727 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (591)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN 296 (591)
+.....||+. +.+..| ..|.|.|+.... .++.+ +-+++.+.+.|.
T Consensus 89 ~~~~~~~~~~---i~~~~~------------------------~~~~G~~~al~~-----a~~~~---~~~~~lv~~~D~ 133 (269)
T 4ecm_A 89 LGSGQEFGVS---FTYRVQ------------------------DKAGGIAQALGL-----CEDFV---GNDRMVVILGDN 133 (269)
T ss_dssp HTTSGGGTCE---EEEEEC------------------------SSCCCHHHHHHT-----THHHH---TTSEEEEEETTE
T ss_pred HhhccccCce---EEEeeC------------------------CccCcHHHHHHH-----HHHhc---CCCcEEEEeCCc
Confidence 8765555542 221111 012344332221 12222 147888999999
Q ss_pred ccccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCC
Q 007727 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (591)
Q Consensus 297 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f 376 (591)
++... --.++..+.++++++.+-+++.......|.+.. + +|+. +++.|-+ ..+ . .+
T Consensus 134 ~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d-~g~v----~~~~ekp------~~~----~------~~ 189 (269)
T 4ecm_A 134 IFSDD-IRPYVEEFTNQKEGAKVLLQSVDDPERFGVANI--Q-NRKI----IEIEEKP------KEP----K------SS 189 (269)
T ss_dssp EESSC-SHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEE--E-TTEE----EEEEESC------SSC----S------CS
T ss_pred cCccC-HHHHHHHHHhcCCCeEEEEEECCCCCCceEEEE--c-CCEE----EEEEECC------CCC----C------Cc
Confidence 66422 234677777778887777766433345565543 2 4542 3333322 011 0 11
Q ss_pred ccceeeeEEehhhh
Q 007727 377 PGNINQLILELGPY 390 (591)
Q Consensus 377 ~gNinn~~~~l~~l 390 (591)
..|+...+|+-+.+
T Consensus 190 ~~~~Giy~~~~~~l 203 (269)
T 4ecm_A 190 YAVTGIYLYDSKVF 203 (269)
T ss_dssp EEEEEEEEECTTHH
T ss_pred EEEEEEEEECHHHH
Confidence 34899999997654
No 12
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=97.82 E-value=0.0001 Score=73.52 Aligned_cols=185 Identities=17% Similarity=0.106 Sum_probs=112.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
|+.+|+||||.||||+ +|.++|+ .|++++++.++++... + .-.++|.|. ++.+.+++++
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i---~GkPli~~~l~~l~~~----~--------~~~ivVv~~---~~~i~~~~~~ 60 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADI---GGKPMIQWVYEQAMQA----G--------ADRVIIATD---DERVEQAVQA 60 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEE---TTEEHHHHHHHHHHHT----T--------CSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEecCcCCCCCC---CcceeeE---CCEEHHHHHHHHHHhC----C--------CCeEEEECC---HHHHHHHHHH
Confidence 5789999999999995 7999998 7999999999988652 1 113456663 5888999886
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
||.. +. +.. + -.|.|-|.++.++.. +...+-+++.+.+-|++|.
T Consensus 61 ---~g~~---v~---------~~~---------~------~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli 104 (252)
T 3oam_A 61 ---FGGV---VC---------MTS---------P------NHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLI 104 (252)
T ss_dssp ---TTCE---EE---------ECC---------T------TCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTC
T ss_pred ---cCCE---EE---------EcC---------C------CCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeec
Confidence 3421 11 110 0 135566766665432 2112568899999999876
Q ss_pred cccch-HHHHHHhhcCCcceeeecc-CcccCc----cceEEEEecCCCceeEEEEeccCc--c--HH-HHhcCCCCCCCC
Q 007727 300 FKAIP-ASLGVSATKQYHVNSLAVP-RKAKEA----IGGITRLTHADGRSMVINVEYNQL--D--PL-LRATGFPDGDVN 368 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~-r~~~e~----vG~i~~~~~~dG~~~v~~VEYsel--~--~~-l~~~~~~~g~l~ 368 (591)
...+. .++..+.++++++++-+++ .+|.+- +|.++ .+.+|+. +.+++- + +. ...++. ...
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv--~d~~g~v----~~fsr~~i~~~~~~~~~~~~---~~~ 175 (252)
T 3oam_A 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVI--TDKSGYA----LYFSRATIPWDRDNFAKADK---AIV 175 (252)
T ss_dssp CHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEE--ECTTSBE----EEEESSCSSCCHHHHHSSSC---CCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEE--ECCCCeE----EEEeCCCCCCCCCccccccc---ccc
Confidence 54332 3456666667888777766 333322 24443 2456753 444442 1 11 000100 000
Q ss_pred cCCCCCCCccceeeeEEehhhhHHHHh
Q 007727 369 CETGYSPFPGNINQLILELGPYMEELK 395 (591)
Q Consensus 369 ~~~~f~~f~gNinn~~~~l~~l~~~l~ 395 (591)
. .+-.|+....|+-+++.+...
T Consensus 176 ----~-~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 176 ----Q-PLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp ----S-CEEEEEEEEEEETTHHHHHHH
T ss_pred ----c-cceEEEEEEEcCHHHHHHHHc
Confidence 1 123599999999998777654
No 13
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=97.75 E-value=0.0017 Score=69.50 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=101.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.|||||-+.||.++|+ .|++++++.++++.+.. .-.++|.|+.. ++.+.+++++
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i---~g~pli~~~l~~l~~~~------------~~~i~vv~~~~-~~~i~~~~~~ 71 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPL---AGKPMVQHVIDAAMKLG------------AQHVHLVYGHG-GELLKKTLAD 71 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHHHT------------CSCEEEEESSC-HHHHHHHC--
T ss_pred cceEEEECCCCCccCCCCCCcccCee---CCeeHHHHHHHHHHhCC------------CCcEEEEeCCC-HHHHHHHhcc
Confidence 68999999999999998899999998 79999999999887631 12466777655 5677777654
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCC-chhhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGH-GDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~Gh-G~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L 298 (591)
. .+.+..| +. +.|. +.++.++..- .+-+++.+.+.|.++
T Consensus 72 ~--------~~~~v~~----------------~~--------~~g~~~~i~~~~~~~--------~~~~~~lv~~~D~P~ 111 (459)
T 4fce_A 72 P--------SLNWVLQ----------------AE--------QLGTGHAMQQAAPHF--------ADDEDILMLYGDVPL 111 (459)
T ss_dssp -----------CEEEC----------------SS--------CCCHHHHHHHHGGGS--------CTTSEEEEEETTCTT
T ss_pred C--------CcEEEeC----------------CC--------CCCcHHHHHHHHHhc--------CCCCcEEEEeCCccc
Confidence 2 1111111 00 1222 3355554321 135799999999977
Q ss_pred ccccchH-HHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCc
Q 007727 299 LFKAIPA-SLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (591)
Q Consensus 299 ~~~~Dp~-~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~ 377 (591)
....+.. ++-.+. ..+.+.-+++......-|.+.. + +|+. .++.|-+... + .. . . .+.
T Consensus 112 i~~~~i~~l~~~~~--~~~~~~~~~~~~~~~~~g~v~~--~-~g~v----~~~~ek~~~~-----~-~~-~----~-~~~ 170 (459)
T 4fce_A 112 ISVDTLQRLLAAKP--EGGIGLLTVKLDNPSGYGRIVR--E-NGDV----VGIVEHKDAS-----D-AQ-R----E-INE 170 (459)
T ss_dssp CCHHHHHHHHHHCC--TTSEEEEEEECSCCTTSCEEEE--E-TTEE----EEEECGGGCC-----T-TG-G----G-CCE
T ss_pred CCHHHHHHHHHHHh--hCCEEEEEEecCCCCcccEEEe--C-CCcE----EEEEECCCCC-----h-HH-h----h-ccE
Confidence 5433221 222222 2455555555332234454432 2 5543 3333322110 0 00 0 1 113
Q ss_pred cceeeeEEehhhhHHHHhh
Q 007727 378 GNINQLILELGPYMEELKK 396 (591)
Q Consensus 378 gNinn~~~~l~~l~~~l~~ 396 (591)
.|+...+|+-+.+.+.+..
T Consensus 171 ~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 171 INTGILVANGRDLKRWLSL 189 (459)
T ss_dssp EEEEEEEEEHHHHHHHHHT
T ss_pred EEEEEEEEEHHHHHHHHHH
Confidence 4888999998877776654
No 14
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=97.69 E-value=0.00024 Score=72.88 Aligned_cols=192 Identities=16% Similarity=0.095 Sum_probs=100.4
Q ss_pred ceEEEEEcCCcCccCC---c-cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 140 NAAFVLVAGGLGERLG---Y-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 140 kvavv~LaGG~GTRLG---~-~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
++.+|+||||.||||+ . +.||.++|+ ..+++++++.++++... . -.++|.|+....+.+.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i--~gg~pli~~~l~~l~~~---~----------~~i~vv~~~~~~~~i~~ 68 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKL--FDHKSLFELSFKRNASL---V----------DETLIVCNEKHYFLALE 68 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTT--BTTBCHHHHHHHHHHTT---C----------SEEEEEEEGGGHHHHHH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEEC--CCCCCHHHHHHHHHHcc---C----------CCEEEEEChhHHHHHHH
Confidence 4678899999999995 2 579999998 24899999999988653 1 14577777765567788
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchh-hHHHhhcChHHHHHHcCceEEEEEeC
Q 007727 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQD 294 (591)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i-~~aL~~sG~l~~l~~~G~eyi~v~~v 294 (591)
+++++ ||++ ++.+..|+ .|.|.|+. +.++. .+ ..-.++.+.+.
T Consensus 69 ~~~~~--~~~~--~~~~i~~~------------------------~~~gt~~al~~a~~------~l--~~~~~~lv~~~ 112 (308)
T 2qh5_A 69 EIKNE--IKNK--SVGFLLES------------------------LSKNTANAIALSAL------MS--DKEDLLIVTPS 112 (308)
T ss_dssp HTTTT--CSSC--EEEEEEES------------------------SCCCHHHHHHHHHH------TS--CTTSEEEEEES
T ss_pred HHHHh--hCCC--ccEEEeCC------------------------CCCChHHHHHHHHH------Hh--CCCCeEEEEcC
Confidence 88753 4432 22221110 13344443 33321 11 12347888999
Q ss_pred CCcccccc-chHHHHH---HhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcC
Q 007727 295 TNGLLFKA-IPASLGV---SATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (591)
Q Consensus 295 DN~L~~~~-Dp~~lG~---~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (591)
|.++...- --.++.. +.+++.++.+-+.+..+...-|.+. + +.+|+. +++.|-+.....+. ...
T Consensus 113 D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~-~-d~~~~V----~~~~Ekp~~~~~~~-----~~~- 180 (308)
T 2qh5_A 113 DHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIE-S-PNGLDV----KRFIEKPSLDKAIE-----FQK- 180 (308)
T ss_dssp SCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEE-C-SSSSBC----SEEEESCCHHHHHH-----HHH-
T ss_pred CccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEE-E-CCCCEE----EEEEECCChHHHHH-----Hhh-
Confidence 98653211 1223444 4455666666555554555567553 2 223443 33333332211100 000
Q ss_pred CCCCCCccceeeeEEehhhhHHHHhh
Q 007727 371 TGYSPFPGNINQLILELGPYMEELKK 396 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l~~ 396 (591)
.| .+..|+...+|+.+.+.+.+.+
T Consensus 181 ~g--~~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 181 SG--GFYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp HC--CEEEEEEEEEEEHHHHHHHHHH
T ss_pred cC--CeEEEeEEEEEEHHHHHHHHHH
Confidence 00 0134999999998876666654
No 15
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=97.68 E-value=0.00042 Score=70.80 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=88.4
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
++..|+||||.||||+ ...||.++|+ .|++++++.++.+.. ++ .-.++|.|+....+...++
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~----~g--------i~~I~vv~~~~~~~~i~~~ 66 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPV---YDKPMIYYPLSTLML----AG--------IREILIISTPQDTPRFQQL 66 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEE---TTEETTHHHHHHHHH----TT--------CCEEEEEECTTTHHHHHHH
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeE---CCEeHHHHHHHHHHH----CC--------CCEEEEEeccccHHHHHHH
Confidence 3567899999999998 4679999998 689999999998864 11 1134566766667778888
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 007727 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (591)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN 296 (591)
+.....||+. +.+..| + .|.|.++.+... ++.+ . + +.+.+...||
T Consensus 67 l~~g~~~g~~---i~~~~~-------------------~-----~~~G~~~al~~a-----~~~i-~-~-~~~~lv~gD~ 111 (293)
T 1fxo_A 67 LGDGSNWGLD---LQYAVQ-------------------P-----SPDGLAQAFLIG-----ESFI-G-N-DLSALVLGDN 111 (293)
T ss_dssp HTTSGGGTCE---EEEEEC-------------------S-----SCCCGGGHHHHT-----HHHH-T-T-SEEEEEETTE
T ss_pred HhcccccCce---EEEeeC-------------------C-----CCCCHHHHHHHH-----HHHh-C-C-CCEEEEECCh
Confidence 8764445542 221111 0 255655543322 1222 1 2 4455566899
Q ss_pred ccccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCc
Q 007727 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (591)
Q Consensus 297 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~ 342 (591)
++....--.++-.+.+.+.+...-+++-...++.|++.. +.+|+
T Consensus 112 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~ 155 (293)
T 1fxo_A 112 LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEF--DQGGK 155 (293)
T ss_dssp EEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEE--CTTSC
T ss_pred hccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEE--CCCCc
Confidence 875432234455555555555444444222235665532 34565
No 16
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=97.64 E-value=0.00079 Score=71.81 Aligned_cols=206 Identities=13% Similarity=0.118 Sum_probs=111.9
Q ss_pred hcceEEEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHH
Q 007727 138 AKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRT 213 (591)
Q Consensus 138 l~kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T 213 (591)
..++.+|+||||.||||+ .+.||.++|+ .|+ +++++.++++.+. + .-.++|.|.. .++.+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi---~gk~pli~~~l~~l~~~----g--------i~~i~vv~~~-~~~~i 73 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYF---GGKARIIDFALSNALNS----G--------IRRIGVATQY-KAHSL 73 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEE---TTTEETHHHHHHHHHHT----T--------CCEEEEEECT-TCHHH
T ss_pred hhceEEEEEcCCCCCccchhhcCCccccccc---CCCCcHHHHHHHHHHhC----C--------CCeEEEEeCC-ChHHH
Confidence 346788999999999998 6789999998 688 9999999998752 1 1135666654 45788
Q ss_pred HHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEe
Q 007727 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (591)
Q Consensus 214 ~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~ 293 (591)
.+++.+. ||+... +.+..++.+..... . .++ .| +-|.++. ++. .++.+...+-+++.+.+
T Consensus 74 ~~~~~~~--~~~~~~----~~~~~v~i~~~~~~--~---~~~---~~-~~Gt~~a---l~~--a~~~l~~~~~~~~lv~~ 133 (420)
T 3brk_X 74 IRHLQRG--WDFFRP----ERNESFDILPASQR--V---SET---QW-YEGTADA---VYQ--NIDIIEPYAPEYMVILA 133 (420)
T ss_dssp HHHHHHH--SCCCCG----GGTCEEEEECCC---------------C-CCCHHHH---HHT--THHHHHHHCCSEEEEEE
T ss_pred HHHHhhh--hccccc----cccCCEEEeCcccc--c---cCC---cc-ccCCHHH---HHH--HHHHHHhcCCCEEEEec
Confidence 8888864 444210 00111222210000 0 000 00 1343332 221 13344334567888999
Q ss_pred CCCccccccchHHHHHHhhcCCcceeeeccC--cccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCC
Q 007727 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 371 (591)
Q Consensus 294 vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r--~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~ 371 (591)
.|. +....--.++..+.++++++.+-+.+. .....-|.+. + +.+|+. +++.|.+....... +..
T Consensus 134 ~D~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~-~-d~~g~v----~~~~ekp~~~~~~~-------~~~ 199 (420)
T 3brk_X 134 GDH-IYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMH-V-NEKDEI----IDFIEKPADPPGIP-------GNE 199 (420)
T ss_dssp SSC-EECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEE-E-CTTSBE----EEEEESCSSCCCBT-------TBT
T ss_pred ccE-EEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEE-E-CCCCcE----EEeEeCCCcccccc-------ccc
Confidence 998 433222346777777787776555442 2233456543 2 345653 33433221100000 000
Q ss_pred CCCCCccceeeeEEehhhhHHHHh
Q 007727 372 GYSPFPGNINQLILELGPYMEELK 395 (591)
Q Consensus 372 ~f~~f~gNinn~~~~l~~l~~~l~ 395 (591)
+ .+..|+...+|+-+.+.+.+.
T Consensus 200 ~--~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 200 G--FALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp T--EEEEEEEEEEEEHHHHHHHHT
T ss_pred c--ceEEeeeeEEEeHHHHHHHHH
Confidence 0 123589999999887666554
No 17
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=97.57 E-value=0.00087 Score=72.00 Aligned_cols=216 Identities=14% Similarity=0.141 Sum_probs=107.2
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccccccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
++.+|+||||.||||+ .+.||.++|+ .++ +++++.++++.+. + .-.++|.|.. .++.+.+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~llpi---~g~~pli~~~l~~l~~~----g--------~~~i~vv~~~-~~~~i~~ 83 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNS----N--------ISKIYVLTQF-NSASLNR 83 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGGCEE---TTTEETTHHHHHHHHHT----T--------CCEEEEEESC-CCHHHHH
T ss_pred ceEEEEECCCCCCcccchhcCCcceeeEE---CCcceeHHHHHHHHHHC----C--------CCEEEEEecc-CHHHHHH
Confidence 4788999999999998 6789999998 688 9999999988652 2 1235666665 4567888
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCC
Q 007727 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (591)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vD 295 (591)
+|.+....++. .++.++.+..+... ..+.. ...+-|.|+-.... ++.+...+-+++.+.+.|
T Consensus 84 ~~~~~~~~~~~----~~~~~~~v~i~~~~--------~~~~~-~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~D 145 (451)
T 1yp2_A 84 HLSRAYASNMG----GYKNEGFVEVLAAQ--------QSPEN-PDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGD 145 (451)
T ss_dssp HHHHHCC------------CCEEEEEESC--------SSTTS-CCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSC
T ss_pred HHhhhhhcccc----cccccCcEEEeccc--------ccccc-cccccCcHHHHHHH-----HHHHHhcCCCeEEEecCc
Confidence 88752100111 01122223332110 00000 01234554322221 233322356889999999
Q ss_pred CccccccchHHHHHHhhcCCcceeeeccCc--ccCccceEEEEecCCCceeEEEEeccCccHHHH--hcCCCCCCCCcCC
Q 007727 296 NGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHADGRSMVINVEYNQLDPLLR--ATGFPDGDVNCET 371 (591)
Q Consensus 296 N~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~--~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~--~~~~~~g~l~~~~ 371 (591)
. +....--.++.++.++++++.+-+.+.. +...-|.+. + +.+|+. +++.|-+.... ....+..-+.+..
T Consensus 146 ~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~-~-d~~~~v----~~~~ekp~~~~~~~~~~~~~~l~~~~ 218 (451)
T 1yp2_A 146 H-LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMK-I-DEEGRI----IEFAEKPQGEQLQAMKVDTTILGLDD 218 (451)
T ss_dssp E-ECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEE-E-CTTSBE----EEEEESCCHHHHHHTCCCGGGGSCCH
T ss_pred E-EEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEE-E-CCCCCE----EEEEECCCchhhcccccccccccccc
Confidence 8 4333223567777777887766544421 334556543 2 344543 44544433211 0000000000000
Q ss_pred ---CCCCCccceeeeEEehhhhHHHHhh
Q 007727 372 ---GYSPFPGNINQLILELGPYMEELKK 396 (591)
Q Consensus 372 ---~f~~f~gNinn~~~~l~~l~~~l~~ 396 (591)
.-..+..|+...+|+-+.+.+.++.
T Consensus 219 ~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 219 KRAKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp HHHHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 0001234899999998877666653
No 18
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=97.56 E-value=0.00053 Score=66.61 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=72.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||| ||.++|+ .|++++++.++++... . -.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i---~g~pli~~~l~~~~~~---~----------~~i~v~~~~---~~i~~~~~~ 59 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNL---LGKPLIRWVVEGLVKT---G----------ERVILATDS---ERVKEVVED 59 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEE---TTEEHHHHHHHHHHTT---T----------SCEEEEESC---HHHHHHHTT
T ss_pred ceEEEEEcCCCCCCCC---CCcceeE---CCEEHHHHHHHHHHHh---C----------CEEEEECCh---HHHHHHHHh
Confidence 4678999999999998 9999998 7999999999988653 1 135666654 567777653
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+ . ++ +... + ..+.|.|+++.++.. -+-+++.+.+.|.++.
T Consensus 60 ~----~---~~----------~~~~--------~------~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~P~~ 99 (234)
T 2y6p_A 60 L----C---EV----------FLTP--------S------DLPSGSDRVLYVVRD---------LDVDLIINYQGDEPFV 99 (234)
T ss_dssp T----S---EE----------EECC--------T------TCCSHHHHHHHHHTT---------CCCSEEEECCTTCCCC
T ss_pred c----e---EE----------EECC--------c------ccccchHHHHHHHHh---------CCCCEEEEecCCcCcC
Confidence 1 0 11 1100 0 124455666654432 1457899999999876
Q ss_pred cccch-HHHHHHhhcC
Q 007727 300 FKAIP-ASLGVSATKQ 314 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~~ 314 (591)
...+. .++..+.+.+
T Consensus 100 ~~~~i~~l~~~~~~~~ 115 (234)
T 2y6p_A 100 YEEDIKLIFRELEKGE 115 (234)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhCC
Confidence 53222 3445555555
No 19
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=97.49 E-value=0.0018 Score=66.27 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=52.8
Q ss_pred eEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+.+|+||||.||||+ ...||.++|+ .+++++++.++.+.. ++ .-.++|.|+....+...+++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~----~g--------i~~Iivv~~~~~~~~i~~~l 68 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSVLML----AG--------IRDILIISTPRDLPLYRDLL 68 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEE---TTEETTHHHHHHHHH----TT--------CCEEEEEECTTTHHHHHHHH
T ss_pred eEEEEECCCCCCccccccCCCCceecEE---CCeeHHHHHHHHHHH----CC--------CCeEEEEeccchHHHHHHHh
Confidence 567899999999998 5789999998 689999999998864 11 11356667666667788888
Q ss_pred HhCCCCCC
Q 007727 218 ESNSYFGM 225 (591)
Q Consensus 218 ~~~~~FGl 225 (591)
.....+|+
T Consensus 69 ~~g~~~g~ 76 (295)
T 1lvw_A 69 GDGSQFGV 76 (295)
T ss_dssp TTSGGGTS
T ss_pred hhccccCc
Confidence 76444554
No 20
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=97.48 E-value=0.00081 Score=67.82 Aligned_cols=187 Identities=16% Similarity=0.133 Sum_probs=111.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||+ .|.++|+ .|++++++.++++... + .-.++|.|. ++.+.+++++
T Consensus 18 ~~~aIIlA~G~stRlp---~K~L~~i---~GkPmi~~~l~~l~~~----~--------i~~IvV~t~---~~~i~~~~~~ 76 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKPLVDI---NGKPMIVHVLERARES----G--------AERIIVATD---HEDVARAVEA 76 (264)
T ss_dssp CCEEEEECCSCCSSST---TGGGCEE---TTEEHHHHHHHHHHHT----T--------CSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCC---CcceeeE---CCeEHHHHHHHHHHhC----C--------CCEEEEECC---HHHHHHHHHH
Confidence 6899999999999995 5999998 7999999999988652 1 113456663 5778888875
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
||.. + .+.. . ..|.|-|.+..++. .+...+-+++.+.+-|++|.
T Consensus 77 ---~g~~---v---------~~~~---------~------~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pli 120 (264)
T 3k8d_A 77 ---AGGE---V---------CMTR---------A------DHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPMI 120 (264)
T ss_dssp ---TTCE---E---------EECC---------T------TCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTTC
T ss_pred ---cCCE---E---------EEec---------C------CCCCCHHHHHHHHH------HhccCCCCEEEEEcCCcccC
Confidence 3321 1 1110 0 13456666665543 22223568999999999886
Q ss_pred cccch-HHHHHHhhcCCcceeeecc-CcccC-----ccceEEEEecCCCceeEEEEeccCccH-HHHhcC-CCCCCCCcC
Q 007727 300 FKAIP-ASLGVSATKQYHVNSLAVP-RKAKE-----AIGGITRLTHADGRSMVINVEYNQLDP-LLRATG-FPDGDVNCE 370 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~-r~~~e-----~vG~i~~~~~~dG~~~v~~VEYsel~~-~l~~~~-~~~g~l~~~ 370 (591)
...+. .++..+.+.++++++-+++ +.+.+ .++++ .+.+|+. +.+++-+. ..+... .......
T Consensus 121 ~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv---~d~~g~~----l~fsr~~ip~~r~~~~~~~~~~~-- 191 (264)
T 3k8d_A 121 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVV---LDAEGYA----LYFSRATIPWDRDRFAEGLETVG-- 191 (264)
T ss_dssp CHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEE---ECTTSBE----EEEESSCCSCCHHHHHHCSSCCC--
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEE---ECCCCeE----EEEecCCCCCCCccccccccccC--
Confidence 54322 3455556678888888776 33332 23332 3567763 55555321 001000 0000000
Q ss_pred CCCCCCccceeeeEEehhhhHHHHh
Q 007727 371 TGYSPFPGNINQLILELGPYMEELK 395 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l~ 395 (591)
. .|-.|+....|+-+++.....
T Consensus 192 --~-~~~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 192 --D-NFLRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp --S-CCEEECSEEEEEHHHHHHHHH
T ss_pred --C-cceEEEEEEEECHHHHHHHHh
Confidence 1 123599999999987776543
No 21
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=97.44 E-value=0.0012 Score=67.45 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=53.2
Q ss_pred eEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+..|+||||.||||+ ...||.++|+ .|++++++.++.+.. ++ .-.++|.|+....+...+++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~----~g--------i~~I~vv~~~~~~~~i~~~l 68 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPI---YDKPMIYYPLSVLML----AG--------IREILIITTPEDKGYFQRLL 68 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEE---TTEETTHHHHHHHHH----TT--------CCEEEEEECTTTHHHHHHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEE---CCeeHHHHHHHHHHh----CC--------CCcEEEEechhHHHHHHHHH
Confidence 567899999999998 5789999998 689999999998864 22 11356667666677788888
Q ss_pred HhCCCCCC
Q 007727 218 ESNSYFGM 225 (591)
Q Consensus 218 ~~~~~FGl 225 (591)
.....||+
T Consensus 69 ~~g~~~g~ 76 (296)
T 1mc3_A 69 GDGSEFGI 76 (296)
T ss_dssp TTSGGGTC
T ss_pred hcccccCc
Confidence 76544554
No 22
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=97.41 E-value=0.0011 Score=66.52 Aligned_cols=188 Identities=14% Similarity=0.086 Sum_probs=104.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||+ ||.++|+ .||+++++.++++.+. + --.++|-|. ++.+.+++++
T Consensus 9 ~~~aIIlA~G~stRl~---~K~L~~i---~GkPli~~~l~~l~~~----~--------i~~VvVvt~---~~~i~~~~~~ 67 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKALVDI---AGKPMIQHVYESAIKS----G--------AEEVVIATD---DKRIRQVAED 67 (256)
T ss_dssp CCEEEEECCCC---CT---TGGGCEE---TTEEHHHHHHHHHHHT----T--------CSEEEEEES---CHHHHHHHHH
T ss_pred CceEEEEcCCCCCCCC---CCCeeeE---CCchHHHHHHHHHHhC----C--------CCEEEEECC---HHHHHHHHHH
Confidence 6889999999999997 8999998 7999999999998652 1 113455563 5788888875
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
||.. +. +.. . -.|.|.+.++.++.. +...+.+++.+.+-|+++.
T Consensus 68 ---~g~~---v~---------~~~---------~------~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli 111 (256)
T 3tqd_A 68 ---FGAV---VC---------MTS---------S------DHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLI 111 (256)
T ss_dssp ---TTCE---EE---------ECC---------T------TCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCC
T ss_pred ---cCCe---EE---------EeC---------C------CCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccC
Confidence 3431 11 110 0 124566666665532 2113578999999999886
Q ss_pred cccch-HHHHHHhhc-CCcceeeecc-CcccC-----ccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCc-C
Q 007727 300 FKAIP-ASLGVSATK-QYHVNSLAVP-RKAKE-----AIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC-E 370 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~-~~~~~~kvv~-r~~~e-----~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~-~ 370 (591)
...+. .++..+.++ +++++.-+++ +.+.+ .+++++ +.+|+. +.+++-+.- ..++....-.. .
T Consensus 112 ~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~---d~~g~~----l~fsr~pip--~~r~~~~~~~~~~ 182 (256)
T 3tqd_A 112 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVL---NRRNYA----LYFSHAPIP--WGRDTFSDKENLQ 182 (256)
T ss_dssp CHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEE---CTTSBE----EEEESSCSS--CCTTTTTCGGGCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEE---CCCCEE----eEEecCCCC--CCCcccccccccc
Confidence 44322 234455443 5677776665 22221 234432 557764 445543210 00000000000 0
Q ss_pred CCCCCCccceeeeEEehhhhHHHH
Q 007727 371 TGYSPFPGNINQLILELGPYMEEL 394 (591)
Q Consensus 371 ~~f~~f~gNinn~~~~l~~l~~~l 394 (591)
...+ +..|+....|+-+++++..
T Consensus 183 ~~~~-~~~~~GiY~y~~~~l~~~~ 205 (256)
T 3tqd_A 183 LNGS-HYRHVGIYAYRVGFLEEYL 205 (256)
T ss_dssp CSSC-CEEEEEEEEEEHHHHHHHH
T ss_pred cCCc-ceEEEEEEEcCHHHHHHHH
Confidence 0112 2359999999998776654
No 23
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=97.40 E-value=0.00078 Score=65.97 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=79.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||| ||.++|+ .|++++++.++++... + ..-.++|.|+. +.+.+++++
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i---~g~pli~~~i~~~~~~----~-------~~~~ivvv~~~---~~i~~~~~~ 61 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDI---VGKPMIQHVYERALQV----A-------GVAEVWVATDD---PRVEQAVQA 61 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEE---TTEEHHHHHHHHHHTC----T-------TCCEEEEEESC---HHHHHHHHH
T ss_pred CeEEEEEcCCcCCCCC---CCccccc---CCchHHHHHHHHHHhC----C-------CCCeEEEECCc---HHHHHHHHH
Confidence 4678999999999997 9999998 7999999999888641 1 01256677753 678888876
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+ |. . ++... + ..+.|.++++.++.. + +-+++.+.+.|.++.
T Consensus 62 ~---~~-----~--------~~~~~--------~------~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~ 102 (245)
T 1h7e_A 62 F---GG-----K--------AIMTR--------N------DHESGTDRLVEVMHK------V---EADIYINLQGDEPMI 102 (245)
T ss_dssp T---TC-----E--------EEECC--------S------CCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTC
T ss_pred c---CC-----e--------EEeCC--------C------ccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcC
Confidence 3 21 1 12110 0 013344555555432 1 457899999999875
Q ss_pred cccc-hHHHHHHhhc-CCcceeeeccC
Q 007727 300 FKAI-PASLGVSATK-QYHVNSLAVPR 324 (591)
Q Consensus 300 ~~~D-p~~lG~~~~~-~~~~~~kvv~r 324 (591)
...+ -.++..+... +++++.-+++.
T Consensus 103 ~~~~i~~l~~~~~~~~~~~~~~~~~~~ 129 (245)
T 1h7e_A 103 RPRDVETLLQGMRDDPALPVATLCHAI 129 (245)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeecC
Confidence 4322 2345555555 67766555543
No 24
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=97.17 E-value=0.0067 Score=61.96 Aligned_cols=147 Identities=13% Similarity=0.069 Sum_probs=86.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||+- ||.++|++. .|++++++.++.+... + .-.++|.|.....+.+.++|..
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~l~~ig~-~g~pli~~~l~~~~~~----~--------~~~i~vv~~~~~~~~~~~~~~~ 69 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQLDGIGP-GGDTIMDYSVYDAIRA----G--------FGRLVFVIRHSFEKEFREKILT 69 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCCCCCCST-TSCCHHHHHHHHHHHH----T--------CCEEEEEECGGGHHHHHHHTHH
T ss_pred ceEEEEECCCCcccCCC--CceEeEcCC-CCeeHHHHHHHHHHHC----C--------CCeEEEEcCchHHHHHHHHHHH
Confidence 46789999999999985 899999831 5899999999988652 2 2246677776656788888876
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
...++ .+|.+..|...- + .....+.. . ...|-|.|+-...... .+ . +.+.|.+-|+ +.
T Consensus 70 ~~~~~---~~i~~~~~~~~~-~-~~~~~~~~--~-----~~~~~Gt~~al~~a~~--~i------~-~~~lV~~gD~-l~ 127 (303)
T 3pnn_A 70 KYEGR---IPVELVFQELDR-L-PEGFSCPE--G-----REKPWGTNHAVLMGRD--AI------R-EPFAVINADD-FY 127 (303)
T ss_dssp HHTTT---SCEEEEECCTTC-C-CTTCCCCT--T-----CCSCCCHHHHHHTTTT--TC------C-SCEEEEESSC-BC
T ss_pred HhccC---CcEEEEeccccc-c-cccccccc--c-----ccccCCcHHHHHHHHH--hc------C-CCEEEEECCe-ec
Confidence 43333 246666665321 1 01111111 1 0235666554433222 22 1 3445667787 43
Q ss_pred cc-cchHHHHHHhh---cCCcceeeecc
Q 007727 300 FK-AIPASLGVSAT---KQYHVNSLAVP 323 (591)
Q Consensus 300 ~~-~Dp~~lG~~~~---~~~~~~~kvv~ 323 (591)
.. .--.++-++.+ .++++++-+.+
T Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 155 (303)
T 3pnn_A 128 GRNGFEVLARKLMTLEGKQGEYCMVGYR 155 (303)
T ss_dssp CHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhccccCceEEEEEE
Confidence 22 11235666654 46777666555
No 25
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=97.16 E-value=0.0032 Score=67.66 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=102.4
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~ 221 (591)
-+|+||||.||||+.+.||.++|+ .|++++++.++++.+. + .-.++|.|+.. .+.+.+++.+
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~~----g--------~~~iivv~~~~-~~~i~~~~~~-- 74 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVLHKV---AGISMLEHVFRSVGAI----Q--------PEKTVTVVGHK-AELVEEVLAG-- 74 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHTT----C--------CSEEEEEECTT-HHHHHHSSSS--
T ss_pred cEEEEcCCCCccCCCCCCcEeeEE---CCccHHHHHHHHHHhc----C--------CCCEEEEECCC-HHHHHHHhCC--
Confidence 468899999999998789999998 7999999999988642 1 12456666554 4444444332
Q ss_pred CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 007727 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (591)
Q Consensus 222 ~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~-i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~~ 300 (591)
.+.+ +. +. .+.|-++ ++.++ +.+ ...-+++.+.+.|.+|..
T Consensus 75 -------~i~~--------v~----------~~------~~~G~~~sl~~a~------~~~-~~~~~~vlv~~~D~P~i~ 116 (468)
T 1hm9_A 75 -------QTEF--------VT----------QS------EQLGTGHAVMMTE------PIL-EGLSGHTLVIAGDTPLIT 116 (468)
T ss_dssp -------SSEE--------EE----------CS------SCCCHHHHHHTTH------HHH-TTCCSEEEEEETTCTTCC
T ss_pred -------CcEE--------Ee----------CC------ccCChHHHHHHHH------HHh-ccCCCeEEEEeCCccccC
Confidence 1111 11 00 0223332 33332 223 222478999999998755
Q ss_pred ccch-HHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCCCCCccc
Q 007727 301 KAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (591)
Q Consensus 301 ~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f~~f~gN 379 (591)
..+. .++-.+.+.++++.+-+.+.......|.+.. +.+|+. +++.|-+.. .+ ... ..+..|
T Consensus 117 ~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~--d~~g~v----~~~~ek~~~-----~~-~~~------~~~~~~ 178 (468)
T 1hm9_A 117 GESLKNLIDFHINHKNVATILTAETDNPFGYGRIVR--NDNAEV----LRIVEQKDA-----TD-FEK------QIKEIN 178 (468)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCE----EEEECTTTC-----CT-TGG------GCCEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEE--CCCCCE----EEEEECCCC-----Ch-HHh------cCeEEE
Confidence 4332 3456666677777766665433334564432 345643 344332210 00 000 012348
Q ss_pred eeeeEEehhhhHHHHh
Q 007727 380 INQLILELGPYMEELK 395 (591)
Q Consensus 380 inn~~~~l~~l~~~l~ 395 (591)
+...+|+-+.+.+.+.
T Consensus 179 ~Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 179 TGTYVFDNERLFEALK 194 (468)
T ss_dssp EEEEEEEHHHHHHHHT
T ss_pred EEEEEEEHHHHHHHHH
Confidence 8888999887766654
No 26
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=97.11 E-value=0.0021 Score=63.95 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=79.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||| +|.++|+ .|++++++.++++... + .-.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~---~gkpli~~~l~~l~~~----~--------~~~ivvv~~~---~~i~~~~~~ 60 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADI---KGKPMIQHVFEKALQS----G--------ASRVIIATDN---ENVADVAKS 60 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEE---TTEEHHHHHHHHHHHT----T--------CSEEEEEESC---HHHHHHHHH
T ss_pred CcEEEEEcCCCCCCCC---CCccccC---CCeEHHHHHHHHHHhC----C--------CceEEEECCc---HHHHHHHHh
Confidence 4678999999999997 5999998 7999999999988652 1 1245666653 567777765
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+ |. . ++... + ..|.|-|.+..+ ++.+...+-+++.+.+.|.++.
T Consensus 61 ~---~~-----~--------~~~~~--------~------~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~i 104 (262)
T 1vic_A 61 F---GA-----E--------VCMTS--------V------NHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLI 104 (262)
T ss_dssp T---TC-----E--------EEECC--------C------SSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTC
T ss_pred c---CC-----E--------EEECC--------c------cccCChHHHHHH------HHHhccCCCCEEEEEeCCcCcc
Confidence 3 31 1 11100 0 113343432222 2223223568899999999876
Q ss_pred cccch-HHHHHHhhcCCcceeeeccC
Q 007727 300 FKAIP-ASLGVSATKQYHVNSLAVPR 324 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r 324 (591)
...+. .++..+.+.+++++.-+++.
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 105 PPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 54322 34555666677776666663
No 27
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=97.09 E-value=0.00043 Score=68.47 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=50.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
++++|+||||.|||||.+.||.++|+ .|++++++.++.+.+. . ..-.++|.|+....+...+++.
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l---~Gkpll~~~l~~~~~~----~-------~~~~ivVv~~~~~~~~~~~~~~ 71 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQL---DGQTLIERAVDGLLDS----G-------VVDTVVVAVPADRTDEARQILG 71 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEE---TTEEHHHHHHHHHHHT----S-------CCCEEEEEECGGGHHHHHHHHG
T ss_pred ceEEEEECCCCCccCCCCCCceEEEE---CCeEHHHHHHHHHHhC----C-------CCCeEEEECChHHHHHHHHHhc
Confidence 68999999999999998889999998 7999999999988652 1 0124667777665566666654
No 28
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=97.08 E-value=0.00058 Score=64.33 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=45.6
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
++.+|+||||.||||| .||.++|+ .|+++++..++++... + .-.++|.|+.. .+.+.+++.
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~---~g~pll~~~l~~l~~~----~--------~~~i~vv~~~~-~~~~~~~~~ 65 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPY---RDTTVLGATLDVARQA----G--------FDQLILTLGGA-ASAVRAAMA 65 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEE---TTEEHHHHHHHHHHHT----T--------CSEEEEEECTT-HHHHHHHSC
T ss_pred ceEEEEECCCCcccCC--CCeEcCee---CCccHHHHHHHHHHhc----C--------CCcEEEEeCCC-HHHHHHHhc
Confidence 5788999999999997 79999998 7999999999988652 1 12456666554 455555543
No 29
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=97.08 E-value=0.0095 Score=63.58 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=49.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||+.+.||.++|+ .|++++++.++++... + .-.++|.|+.. .+.+.+++.+
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~l~~i---~gkpli~~~l~~l~~~----~--------~~~iivv~~~~-~~~i~~~~~~ 68 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKVLHTI---AGKPMVKHVIDTAHQL----G--------SENIHLIYGHG-GDLMRTHLAN 68 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGGGSEE---TTEEHHHHHHHHHHHT----T--------CSCEEEEECTT-HHHHHHHTTT
T ss_pred cceEEEECCCCCcccCCCCCccccEE---CCccHHHHHHHHHHhC----C--------CCcEEEEeCCC-HHHHHHHhhc
Confidence 57889999999999997789999998 7999999999988652 1 11356666653 4666666654
No 30
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=97.07 E-value=0.00054 Score=64.51 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=45.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
++.+|+||||.||||| .||.++|+ .|+++++..++++... + .-.++|.|+.. ++.+.++++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~---~g~pli~~~l~~l~~~---------~---~~~i~vv~~~~-~~~~~~~~~ 65 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPL---GDTTLLGATLAMARRC---------P---FDQLIVTLGGA-ADEVLEKVE 65 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEE---TTEEHHHHHHHHHHTS---------S---CSEEEEEECTT-HHHHHHHSC
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEe---CccCHHHHHHHHHHhC---------C---CCcEEEEeCCC-HHHHHHHhc
Confidence 5788999999999998 79999998 7999999999888642 0 12456666543 345555544
No 31
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=97.05 E-value=0.0025 Score=62.11 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=78.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++++|+||||.||||+ +|.++|+ .|++++++.++++.+. + .--.+++-| .++.+.+++++
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i---~Gkpli~~~i~~~~~~----~-------~~~~ivv~~---~~~~i~~~~~~ 62 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRL---AGVPLIGWVLRAALDA----G-------VFQSVWVST---DHDEIENVAKQ 62 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEE---TTEEHHHHHHHHHHHH----T-------CCSEEEEEE---SCHHHHHHHHH
T ss_pred cEEEEEEcCCCCCCCC---CcccceE---CCEEHHHHHHHHHHhC----C-------CcCEEEEEC---ChHHHHHHHHH
Confidence 5788999999999996 5999998 7999999999988763 1 012355555 35678888875
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
+ |. .++.+ ...+.. ..+.|.+.+..+|..- .+.+++.+.+.|++|.
T Consensus 63 ~---g~-----~~~~~---------~~~~~~---------~~~~~~~~v~~al~~~--------~~~d~vlv~~~D~Pli 108 (229)
T 1qwj_A 63 F---GA-----QVHRR---------SSETSK---------DSSTSLDAIVEFLNYH--------NEVDIVGNIQATSPCL 108 (229)
T ss_dssp T---TC-----EEEEC---------CGGGSS---------TTCCHHHHHHHHHTTC--------TTCSEEEEECTTCTTC
T ss_pred c---CC-----EEEeC---------hhhhcC---------CCCcHHHHHHHHHHhc--------CCCCEEEEecCCCCcC
Confidence 3 32 11211 000000 1122334455555331 2568899999999886
Q ss_pred cccch-HHHHHHhhcCCcceeeec
Q 007727 300 FKAIP-ASLGVSATKQYHVNSLAV 322 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv 322 (591)
...+. .++..+...++++.+-++
T Consensus 109 ~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 109 HPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp CHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEe
Confidence 54222 345555566666555554
No 32
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=96.97 E-value=0.00091 Score=66.16 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=45.7
Q ss_pred ceEEEEEcCCcCccCCc-cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~-~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
++.+|+||||.|||||. +.||.++|+ .|++++++.++.+.+. + ..-.++|.|+..-.+...+.++
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l---~Gkpll~~~l~~~~~~----~-------~~~~ivvv~~~~~~~~~~~~~~ 68 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPL---NGKPIIVHTVEKFILN----T-------RFDKILISSPKEWMNHAEDNIK 68 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEE---TTEEHHHHHHHHHHTC----T-------TCSEEEEEECGGGHHHHHHHHH
T ss_pred ccEEEEECCccccccCCCCCCCeEEEE---CCeeHHHHHHHHHHcC----C-------CCCEEEEEeCHHHHHHHHHHHH
Confidence 57889999999999998 779999998 7999999999987541 1 0124667777665555677777
Q ss_pred hCC
Q 007727 219 SNS 221 (591)
Q Consensus 219 ~~~ 221 (591)
++.
T Consensus 69 ~~~ 71 (246)
T 3f1c_A 69 KYI 71 (246)
T ss_dssp HHC
T ss_pred HhC
Confidence 643
No 33
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=96.96 E-value=0.00057 Score=65.78 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=47.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
++.+|+||||.|||||...||.++|+ .|++++++.++++.+. + ..-.++|.|+..-.+...+++
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~---~g~pli~~~l~~l~~~----~-------~~~~i~vv~~~~~~~~~~~~~ 65 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTL---GGTPLLEHALSGLRAS----G-------VIDRIVIAVPPALTDESKLVF 65 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEE---TTEEHHHHHHHHHHHH----S-------CCSEEEEEECGGGHHHHHHHT
T ss_pred ceEEEEECCccCcccCCCCCCeeeEE---CCeEHHHHHHHHHhcC----C-------CCCeEEEEEcccHHHHHHHHh
Confidence 46789999999999997789999998 6999999999988652 1 012456666654434444443
No 34
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=96.90 E-value=0.0012 Score=65.00 Aligned_cols=190 Identities=15% Similarity=0.089 Sum_probs=98.9
Q ss_pred eEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+.+|+||||.||||+- +.||.++|+ .|++++++.++++.+. + .-.++|.|+.. ++.+.+++
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i---~gkpli~~~l~~l~~~----g--------~~~i~vv~~~~-~~~i~~~~ 66 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEI---GGKPILWHIMKMYSVH----G--------IKDFIICCGYK-GYVIKEYF 66 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEE---TTEEHHHHHHHHHHHT----T--------CCEEEEEECTT-HHHHHHHH
T ss_pred cEEEEECCCCcccCCCccCCCCccccEE---CCEEHHHHHHHHHHHC----C--------CCEEEEEcccC-HHHHHHHH
Confidence 5678899999999985 679999998 6999999999888652 1 12457777654 47888898
Q ss_pred HhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCcc----ccccCCCchhhHHHhhcChHHHHHHcCceEEEEEe
Q 007727 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (591)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i----~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~ 293 (591)
.++..++ .++.+..|+.--.+. ... ..++.+ .-.+-|.|+....... .+ . +-+++.+.+
T Consensus 67 ~~~~~~~---~~~~~~~~~~~~~~~--~~~-----~~~~~v~~~~~~~~~gt~~al~~a~~--~~----~-~~~~~lv~~ 129 (259)
T 1tzf_A 67 ANYFLHM---SDVTFHMAENRMEVH--HKR-----VEPWNVTLVDTGDSSMTGGRLKRVAE--YV----K-DDEAFLFTY 129 (259)
T ss_dssp HTHHHHH---SCEEEEGGGTEEEET--TCC-----CCCCEEEEEECCSSCCHHHHHHHTGG--GT----T-TSSCEEEEE
T ss_pred hhccccc---ccccccccccceeee--ecc-----ccccceeeeecccccCcHHHHHHHHH--hc----C-CCCcEEEEE
Confidence 7642110 123333332200010 000 011111 1135566654433222 11 1 236777888
Q ss_pred CCCccccccchHHHHHHhhcCCcceeeeccCcccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCcCCCC
Q 007727 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (591)
Q Consensus 294 vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~~dG~~~v~~VEYsel~~~l~~~~~~~g~l~~~~~f 373 (591)
-|++ ....--.++.++..+++++.+..+ .+....|.+.. + +|+. +++.|.+.. .
T Consensus 130 ~D~~-~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~g~v~~--~-~g~v----~~~~ekp~~---------~------- 183 (259)
T 1tzf_A 130 GDGV-ADLDIKATIDFHKAHGKKATLTAT--FPPGRFGALDI--Q-AGQV----RSFQEKPKG---------D------- 183 (259)
T ss_dssp TTEE-ECCCHHHHHHHHHHHCCSEEEEEE--CCCCCSEEEEE--E-TTEE----EEEEESCSC---------C-------
T ss_pred CCEe-cccCHHHHHHHHHHhCCeEEEEEe--cCCCCccEEEE--c-CCEE----EEEEecCCC---------C-------
Confidence 8984 332223456667666776544332 23344565432 2 5642 444442210 0
Q ss_pred CCCccceeeeEEehhhh
Q 007727 374 SPFPGNINQLILELGPY 390 (591)
Q Consensus 374 ~~f~gNinn~~~~l~~l 390 (591)
.+..|+...+|+-+.+
T Consensus 184 -~~~~~~Giy~~~~~~l 199 (259)
T 1tzf_A 184 -GAMINGGFFVLNPSVI 199 (259)
T ss_dssp -SCCEECCCEEECGGGG
T ss_pred -CceEEEEEEEeCHHHH
Confidence 1134888888887654
No 35
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=96.88 E-value=0.00057 Score=66.18 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=30.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++.+|+||||.|||||.+.||.++|+ .|++++++.++++.+
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i---~g~pli~~~l~~l~~ 44 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPL---LGQPIALYSFFTFSR 44 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEE---TTEEHHHHHHHHHHH
T ss_pred ceEEEEECCccccccCCCCCccEeEE---CCEEHHHHHHHHHHc
Confidence 57889999999999997789999998 799999999988865
No 36
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=96.84 E-value=0.0007 Score=66.08 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=36.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++.+|+||||.|||||.+.||.++|+ .|++++++.++++..
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l~~i---~g~pll~~~i~~l~~ 47 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQYLSI---GNQTILEHSVHALLA 47 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHT
T ss_pred ceeEEEECCcCccccCCCCCcceeeE---CCEEHHHHHHHHHHh
Confidence 57889999999999997679999998 799999999988864
No 37
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=96.79 E-value=0.0023 Score=64.30 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=49.9
Q ss_pred eEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+.+|+||||.||||+- ..||.++|+ .|++++++.++++... + .-.++|.|+ ...+.+.++|
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~ 66 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPI---VDKPLIQYAVEEAMEA----G--------CEVMAIVTG-RNKRSLEDYF 66 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBS---SSSBHHHHHHHHHHHH----T--------CCEEEEEEC-TTHHHHHHHT
T ss_pred eEEEEECCcCCcccCccccCCCcccceE---CCEEHHHHHHHHHHhC----C--------CCEEEEEec-CCHHHHHHHH
Confidence 4678999999999986 889999998 6999999999998762 2 123556665 4567888888
Q ss_pred HhC
Q 007727 218 ESN 220 (591)
Q Consensus 218 ~~~ 220 (591)
.+.
T Consensus 67 ~~~ 69 (281)
T 3juk_A 67 DTS 69 (281)
T ss_dssp SCC
T ss_pred hcc
Confidence 764
No 38
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=96.77 E-value=0.00068 Score=65.70 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=38.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.|||||.+.||.++|+ .|++++++.++++... + ..-.++|.|+... +.+.+ +.+
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~l~~~---~gkpli~~~l~~l~~~----~-------~~~~ivvv~~~~~-~~~~~-~~~ 69 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQYVEI---GSKTVLEHVLGIFERH----E-------AVDLTVVVVSPED-TFADK-VQT 69 (231)
T ss_dssp CEEEEEECC----------CCSCCEE---TTEEHHHHHHHHHHTC----T-------TCCEEEEECCTTC-STHHH-HHH
T ss_pred ceEEEEEcccccccCCCCCCceEeEE---CCeEHHHHHHHHHHcC----C-------CCCeEEEEECccH-HHHHH-HHh
Confidence 67899999999999997679999998 6999999999987641 0 0124566666543 45555 554
No 39
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=96.73 E-value=0.00085 Score=65.22 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=36.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
.+..|+||||.|||||.+.||.++|+ .|++++++.++++.+
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l~~i---~Gkpli~~~i~~l~~ 53 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEI---EGRMLFEYPLSTFLK 53 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEE---TTEETTHHHHHHHHH
T ss_pred cCeEEEEcCcchhhcCCCCCceEEEE---CCeEHHHHHHHHHHc
Confidence 57889999999999997779999998 799999999998865
No 40
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=96.71 E-value=0.0017 Score=62.91 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=41.2
Q ss_pred eEEEEEcCCcCccCCc-cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 141 AAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 141 vavv~LaGG~GTRLG~-~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
+.+|+||||.|||||- +.||.++|+ .|++++++.++++.+. + ..-.++|.|+....+.+.+++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i---~g~pli~~~l~~l~~~----~-------~~~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLEL---GDRPILIHTIEKFVLE----P-------SIEKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp EEEEEEEC-----------CGGGSEE---TTEEHHHHHHHHHHTC----T-------TCCCEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCeeeee---CCccHHHHHHHHHHcC----C-------CCCeEEEEeCHHHHHHHHHHHHh
Confidence 5678999999999985 569999998 6999999999887641 0 01256777776655678888765
No 41
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.0015 Score=61.65 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=45.3
Q ss_pred EEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
.+|+||||.|||||- .||.++|+ .|++++++.++++... + --.++|.|+.. ++.+.+++++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~l~~~---~g~pli~~~l~~l~~~---------~---~~~v~vv~~~~-~~~i~~~~~~ 62 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKPLIKL---CGRCLIDYVVSPLLKS---------K---VNNIFIATSPN-TPKTKEYINS 62 (196)
T ss_dssp EEEEEC----CGGGG-SCGGGCEE---TTEEHHHHHHHHHHSS---------S---CCCEEEECCTT-CHHHHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCccEEEE---CCEEHHHHHHHHHHHC---------C---CCEEEEEeCCC-hHHHHHHHHh
Confidence 578999999999986 79999998 7999999999988641 1 12567777765 6778889887
No 42
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=96.70 E-value=0.0012 Score=63.43 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=35.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (591)
++.+|+||||.||||| ..||.++|+ .|+++++..++++.
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~ll~i---~G~pli~~~l~~l~ 44 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKGLLEL---NGKPLWQHVADALM 44 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGGGSEE---TTEEHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCceeeE---CceeHHHHHHHHHH
Confidence 5788999999999998 579999998 79999999999876
No 43
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.0011 Score=63.25 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=34.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++.+|+||||.|||||. ||.++|+ .|+++++..++++..
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i---~g~pll~~~l~~l~~ 40 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKI---DNTPIIMRTIRIYGD 40 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBS---SSSBHHHHHHHHTTT
T ss_pred ceEEEEECCcCcccCCC--CeeeCEe---CceEHHHHHHHHHHh
Confidence 36789999999999984 9999998 799999999888753
No 44
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=96.63 E-value=0.0014 Score=63.68 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=46.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
++.+|+||||.||||| ||.++|+ .|++++++.++++.+. + ..-.++|.|. ++.+.+++++
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i---~gkpll~~~l~~~~~~----~-------~~~~ivvv~~---~~~i~~~~~~ 63 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKM---NGISLLGHTINAAISS----K-------CFDRIIVSTD---GGLIAEEAKN 63 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEE---TTEEHHHHHHHHHHHH----C-------CCSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEecCCCCCCCC---Cccccee---CCcCHHHHHHHHHHhC----C-------CCCEEEEECC---CHHHHHHHHH
Confidence 5778999999999999 9999998 7999999999988652 1 0124566664 4667777765
No 45
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=96.52 E-value=0.0014 Score=64.40 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=27.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIEC 180 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~ 180 (591)
++++|+||||.|||||.+ ||.++|+ .|+++++..+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l~~i---~gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAFLQV---GGRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGGGCBC---SSSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeEEEE---CCEEHHHHHHHh
Confidence 578899999999999966 9999998 799999998887
No 46
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0018 Score=62.81 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=33.5
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (591)
+..|+||||.|+||| .||.++|+ .|+++++..++.+.
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~---~G~pli~~~~~~l~ 37 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVML---CGKKLIEWVLEKYS 37 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEE---TTEEHHHHHHHHHT
T ss_pred CEEEEECCCchhhCC--CCCcccEE---CCeeHHHHHHHHhc
Confidence 367899999999999 89999998 79999999999874
No 47
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=96.43 E-value=0.013 Score=58.46 Aligned_cols=183 Identities=11% Similarity=0.039 Sum_probs=101.2
Q ss_pred eEEEEEcCCcCccCCccCcccccccccCCCcchHHHHH-HHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007727 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYI-ECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (591)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~-~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (591)
..+|+||||.||||+ +|.++|+ .|++++++.+ +++++. + .-.++|-|. ++.+.+++++
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i---~GkPli~~~i~~~~~~~----~--------~~~vvVvt~---~~~i~~~~~~ 60 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLI---HDRPMILRVVDQAKKVE----G--------FDDLCVATD---DERIAEICRA 60 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEE---TTEEHHHHHHHHHHTCT----T--------CCEEEEEES---CHHHHHHHHT
T ss_pred eEEEEEeCCCCCCCC---CCceeeE---CCeEhHHHHHHHHHHhc----C--------CCEEEEECC---HHHHHHHHHH
Confidence 467899999999997 5999998 7999999999 877531 1 113456663 4778888765
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 007727 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (591)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~aL~~sG~l~~l~~~G~eyi~v~~vDN~L~ 299 (591)
||.. ++.... . .|.|.+.++.++. .+...+.+++.+.+-|++|.
T Consensus 61 ---~g~~-------------v~~~~~-------~-------~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~Pli 104 (253)
T 4fcu_A 61 ---EGVD-------------VVLTSA-------D-------HPSGTDRLSEVAR------IKGWDADDIIVNVQGDEPLL 104 (253)
T ss_dssp ---TTCC-------------EEECCT-------T-------CCCHHHHHHHHHH------HHTCCTTCEEEECCTTCTTC
T ss_pred ---cCCe-------------EEEeCC-------C-------CCChHHHHHHHHH------hcCcCCCCEEEEEeCCcccC
Confidence 3332 111000 0 1234444544442 23223568999999999886
Q ss_pred cccch-HHHHHHhhc-CCcceeeecc-C------cccCccceEEEEecCCCceeEEEEeccC--ccHHHHhcCCCCCCCC
Q 007727 300 FKAIP-ASLGVSATK-QYHVNSLAVP-R------KAKEAIGGITRLTHADGRSMVINVEYNQ--LDPLLRATGFPDGDVN 368 (591)
Q Consensus 300 ~~~Dp-~~lG~~~~~-~~~~~~kvv~-r------~~~e~vG~i~~~~~~dG~~~v~~VEYse--l~~~l~~~~~~~g~l~ 368 (591)
..-+. .++..+.++ +..+++-+++ + +|+. ++++ .+.+|+. +-+++ ++.. ++... ..
T Consensus 105 ~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv---~d~~g~~----l~fsr~~ip~~----r~~~~-~~ 171 (253)
T 4fcu_A 105 PAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VKVV---MSKQNEA----LYFSRATIPYD----RDGAK-RD 171 (253)
T ss_dssp CHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CEEE---ECTTSBE----EEEESSCCSCC----TTTSS-SS
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cEEE---ECCCCeE----EEecCCCCCCC----CCccc-cc
Confidence 53221 234444444 4566655554 1 2332 3332 3567763 33344 2210 10000 00
Q ss_pred cCC-CCCCCccceeeeEEehhhhHHHH
Q 007727 369 CET-GYSPFPGNINQLILELGPYMEEL 394 (591)
Q Consensus 369 ~~~-~f~~f~gNinn~~~~l~~l~~~l 394 (591)
..+ .. .+..|+....|+-+++.+..
T Consensus 172 ~~~~~~-~~~~~~GiY~f~~~~l~~~~ 197 (253)
T 4fcu_A 172 EPTLHT-QAFRHLGLYAYRVSLLQEYV 197 (253)
T ss_dssp SCCCCS-CCEEEEEEEEEEHHHHHHHT
T ss_pred cccccc-ceeEEEEEEEeCHHHHHHHH
Confidence 000 01 12349999999998776654
No 48
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=96.41 E-value=0.0021 Score=64.00 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=36.8
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++.+|+||||.||||+ .+.||.++|+ .|+++++..++++..
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i---~gkpli~~~l~~l~~ 68 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQV---NQKPLIEYQIEFLKE 68 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeE---CCEEHHHHHHHHHHH
Confidence 5788999999999998 5789999998 799999999998875
No 49
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=96.20 E-value=0.0058 Score=61.99 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=49.2
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
.+.+|+||||.||||+- +.||.++|+ .|++++++.++++... + .-.++|.|+.. .+.+.++
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~~----g--------i~~i~vv~~~~-~~~i~~~ 71 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIAA----G--------ITEIVLVTHSS-KNSIENH 71 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHHT----T--------CCEEEEEECGG-GHHHHHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEE---CCeEHHHHHHHHHHHC----C--------CCEEEEEeCCC-HHHHHHH
Confidence 46789999999999974 579999998 6899999999988652 1 11356666654 6778888
Q ss_pred HHh
Q 007727 217 LES 219 (591)
Q Consensus 217 l~~ 219 (591)
+.+
T Consensus 72 ~~~ 74 (302)
T 2e3d_A 72 FDT 74 (302)
T ss_dssp HSC
T ss_pred Hhc
Confidence 764
No 50
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=96.19 E-value=0.0044 Score=64.53 Aligned_cols=192 Identities=18% Similarity=0.142 Sum_probs=102.0
Q ss_pred eEEEEEcCCcCccCC----ccCcccccccccCCC-cchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007727 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (591)
Q Consensus 141 vavv~LaGG~GTRLG----~~~pK~~lpv~~~~~-~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (591)
+..|+||||.||||+ ...||.++|+ .| ++++|..++++..+ .+ .-.++|.|.....+.+.+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l---~g~~pli~~~l~~l~~~---~~--------~~~iivvt~~~~~~~i~~ 67 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKL---FGNKSLMRWTFERVLEE---MD--------PKDVIVVTHKDYVERTKK 67 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCC---BTTBCHHHHHHHHHHTT---CC--------GGGEEEEEEGGGHHHHHH
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEEC---CCCCcHHHHHHHHHhcc---CC--------CCcEEEEcChHHHHHHHH
Confidence 357889999999998 5689999998 46 99999999988642 01 124566666544455666
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhH-HHhhcChHHHHHHcCceEEEEEeC
Q 007727 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA-LLYSSGLLKEWHDAGLKWVLFFQD 294 (591)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG~i~~-aL~~sG~l~~l~~~G~eyi~v~~v 294 (591)
++.+.. ..+ ++..+ .|-|.|.... ++. . . ..-+++.+.+.
T Consensus 68 ~l~~~~-----~~~------------------ii~e~--------~~~gta~ai~~a~~------~-~-~~~~~~lvl~~ 108 (336)
T 2x65_A 68 ELPELP-----DEN------------------IIAEP--------MKKNTAPACFIGTK------L-A-DDDEPVLVLPA 108 (336)
T ss_dssp HCTTSC-----GGG------------------EEEES--------SCCCHHHHHHHHHT------T-S-CTTCEEEEEET
T ss_pred Hhhccc-----cce------------------EEeCC--------CCCCcHHHHHHHHH------h-h-CCCCEEEEEcC
Confidence 655421 011 12211 1223333222 221 1 1 22468889999
Q ss_pred CCccccccch-----HHHHHHhhcCCcceeeeccCcccCccceEEEEec-CCCceeEEEEeccCccHHHHhcC-CCCCCC
Q 007727 295 TNGLLFKAIP-----ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTH-ADGRSMVINVEYNQLDPLLRATG-FPDGDV 367 (591)
Q Consensus 295 DN~L~~~~Dp-----~~lG~~~~~~~~~~~kvv~r~~~e~vG~i~~~~~-~dG~~~v~~VEYsel~~~l~~~~-~~~g~l 367 (591)
|.++....+. .++-++.+++..+.+-+.+..|...-|.+..-.. .++-..| ..+.|.+....++. ...|.
T Consensus 109 D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V--~~f~EKp~~~~a~~~~~~g~- 185 (336)
T 2x65_A 109 DHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKV--AQFREKPDLETAKKFVESGR- 185 (336)
T ss_dssp TCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEE--EEEEESCCHHHHHHHHHHTC-
T ss_pred CceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEE--EEEEECCChHHHHHHHhcCC-
Confidence 9965432111 1223344446655555555556556676542100 0111223 34444443321110 00111
Q ss_pred CcCCCCCCCccceeeeEEehhhhHHHHhh
Q 007727 368 NCETGYSPFPGNINQLILELGPYMEELKK 396 (591)
Q Consensus 368 ~~~~~f~~f~gNinn~~~~l~~l~~~l~~ 396 (591)
|.-|+..+.|+.+.+.+.+++
T Consensus 186 --------y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 186 --------FLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp --------EEEEEEEEEEEHHHHHHHHHH
T ss_pred --------eEEEeeeEEEEHHHHHHHHHH
Confidence 123999999999887666654
No 51
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=96.17 E-value=0.0047 Score=62.56 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=48.9
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (591)
.+.+|+||||.||||+- ..||.++|+ .|++++++.++++... + .-.++|.|+.. .+.+.++
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~~----g--------~~~i~vv~~~~-~~~i~~~ 77 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEMLPV---VDRPLIQYAVDEAVEA----G--------IEQMIFVTGRG-KSALEDH 77 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHHT----T--------CCEEEEEECTT-CHHHHHH
T ss_pred ccEEEEECCCCccccCccccCCCceeeeE---CCeEHHHHHHHHHHhC----C--------CCEEEEEeCCC-HHHHHHH
Confidence 56789999999999974 679999998 6999999999988652 2 11346666544 6777777
Q ss_pred HHh
Q 007727 217 LES 219 (591)
Q Consensus 217 l~~ 219 (591)
+.+
T Consensus 78 ~~~ 80 (297)
T 2ux8_A 78 FDI 80 (297)
T ss_dssp TSC
T ss_pred Hhh
Confidence 654
No 52
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=96.17 E-value=0.001 Score=63.72 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=34.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++.+|+||||.||||| .||.++|+ .|+++++..++++..
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~ll~i---~g~pll~~~l~~l~~ 52 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKLLYEI---KGKKVIERVYETAKS 52 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHHHHHH---HHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCccCC--CCcccceE---CceEHHHHHHHHHHH
Confidence 5788999999999998 79999998 699999999988864
No 53
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=95.95 E-value=0.0034 Score=61.05 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=39.6
Q ss_pred hcceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 138 l~kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
..++.+|+||||.|||||-. ||.++|+ .|+++++..++++... . -.++|.| ..++...+++
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~l~~i---~g~pli~~~l~~l~~~---~----------~~i~vv~--~~~~~~~~~~ 76 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKPLVRV---GGCEIILRTMKLLSPH---V----------SEFIIVA--SRYADDIDAF 76 (232)
T ss_dssp CCCEEEEEEECC------CC-CGGGCEE---TTEEHHHHHHHHHGGG---E----------EEEEEEE--STTHHHHHHH
T ss_pred cccceEEEECCcCcCcCCCC-CcEEeEE---CCEEHHHHHHHHHHHh---C----------CEEEEEe--CChHHHHHHH
Confidence 44688999999999999743 9999998 7999999999887542 1 1345656 4455566655
No 54
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=95.82 E-value=0.0016 Score=65.04 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=33.3
Q ss_pred EEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHH
Q 007727 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
+|+||||.||||+ .+.||.++|+ .|++++++.++.+..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv---~gkpli~~~l~~l~~ 42 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEA---HGQTLFEHSVNSFAA 42 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEE---TTEEHHHHHHGGGGG
T ss_pred EEEEcCCCCcccccCCCCCCccccEE---CCeEHHHHHHHHHhc
Confidence 6889999999995 4789999998 799999999988753
No 55
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.82 E-value=0.0081 Score=61.81 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=46.3
Q ss_pred eEEEEEcCCcCccCCc---cCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007727 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (591)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (591)
+.+|+||||.||||+- ..||.++|+ .|++++++.++++.. ++ .-.++|.|+.. .+.+.+++
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~----~g--------i~~iivv~~~~-~~~i~~~~ 76 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPV---VDTPGIELIAAEAAE----LG--------ATRLAIITAPN-KAGVLAHF 76 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHH----TT--------CCEEEEEECTT-CHHHHHTT
T ss_pred eEEEEECCCCccccCccccCCCceeeeE---CCEEHHHHHHHHHHh----CC--------CCEEEEEecCc-HHHHHHHH
Confidence 5689999999999974 679999998 689999999998865 12 11356666553 56666665
Q ss_pred H
Q 007727 218 E 218 (591)
Q Consensus 218 ~ 218 (591)
.
T Consensus 77 ~ 77 (323)
T 2pa4_A 77 E 77 (323)
T ss_dssp S
T ss_pred h
Confidence 4
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=95.60 E-value=0.0078 Score=63.65 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=36.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++++|+||||.|||||.+.||.++|+ .|++++++.++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l---~GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRL---GNDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEE---BTEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcceEEE---CCeEHHHHHHHHHHc
Confidence 57889999999999997779999998 699999999988754
No 57
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=95.22 E-value=0.012 Score=61.32 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=34.6
Q ss_pred eEEEEEcCCcCccCC----ccCcccccccccCCC-cchHHHHHHHHHH
Q 007727 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILA 183 (591)
Q Consensus 141 vavv~LaGG~GTRLG----~~~pK~~lpv~~~~~-~s~lql~~~~i~~ 183 (591)
+..|+||||.||||. ...||.++|+ .| +|++|..++++..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l---~G~~pli~~~l~~l~~ 47 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPL---FEGKTLLEATLERLAP 47 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBC---GGGCBHHHHHHHHHTT
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEc---CCCChHHHHHHHHHhC
Confidence 568999999999996 4679999998 56 9999999998854
No 58
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=94.78 E-value=0.021 Score=55.70 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=33.4
Q ss_pred ceEEEEEcCCc---CccCCccCcccccccccCCCcchHHHHHHHHHH
Q 007727 140 NAAFVLVAGGL---GERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (591)
Q Consensus 140 kvavv~LaGG~---GTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (591)
++.+|+||||. |+||| ..||.++|+ .|++++++.++++..
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i---~g~pll~~~l~~l~~ 44 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPY---RGRPMVEWVLEALYA 44 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEE---TTEETHHHHHHHHHH
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEE---CCEEHHHHHHHHHHh
Confidence 36788999999 66665 379999998 799999999998865
No 59
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=94.61 E-value=0.021 Score=59.92 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=45.3
Q ss_pred EEEEEcCCcCccCC---ccCcccccccccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007727 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (591)
Q Consensus 142 avv~LaGG~GTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (591)
.+|+||||.||||+ ...||.++|+ .+++++++.++++.+. + .-.++|.|+.. +.++++
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i---~g~pli~~~l~~l~~~----~--------~~~i~vv~~~~----i~~~~~ 62 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPI---LSKPLIEYQIEYLRKC----G--------IRDITVIVSSK----NKEYFE 62 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHHT----T--------CCEEEEEECGG----GHHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcceeeE---CCEeHHHHHHHHHHHC----C--------CCEEEEEeCHH----HHHHhh
Confidence 46899999999996 4679999998 7999999999988652 1 11456667655 667776
Q ss_pred h
Q 007727 219 S 219 (591)
Q Consensus 219 ~ 219 (591)
+
T Consensus 63 ~ 63 (401)
T 2ggo_A 63 K 63 (401)
T ss_dssp H
T ss_pred c
Confidence 5
Done!