BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007728
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/594 (71%), Positives = 497/594 (83%), Gaps = 5/594 (0%)
Query: 1 MTSDFALSSPLVPRVSEKDAKALQYIEEITRNAATFQETVLAEILSRNANSEYLQRYKLG 60
M D LSSPL P SEKDAKALQ+IEE+TRNA + QE VLAEILSRN +EYL+R+KL
Sbjct: 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLE 60
Query: 61 GATDRETFKLKLPVITYEDIKPDIQRMADGDRSAVLLASPISEFLKSSGTSSGEQKLFPS 120
G+T RETFK K+PVI YED++P+IQR+A+GDRSA+L A PISEFL SSGTS+GE+KL P+
Sbjct: 61 GSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT 120
Query: 121 TQEELDRRHFQISLLRAVMNRCVPDLDKGKGLYFLFVRPETRTPGGLLVRPASNSMYKSD 180
QEELDRR SLL VMN VP LDKGKGLYFLFV+ ETRTPGGLL RP S YKS+
Sbjct: 121 IQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSE 180
Query: 181 HFKTRLHD----YTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRF 236
HFKTR +D YTSP EAILCADSFQSMYT MLCG+ ER+QVLRLGA+FASGLLRA+RF
Sbjct: 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240
Query: 237 LQIHWQALANDIETGTLNQKITDPSIRDCMARILKPRPELAELIRMECSEENWEGIIARI 296
LQ++W L +DI TGTL+ KITDPS+R+C+A +LKP PELA+L+ ECS++NWEGII RI
Sbjct: 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRI 300
Query: 297 WPNTKYLDAVATGSMAQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTI 356
WPNTKYLD + TG+MAQYI LDYYSG LP+A +Y+SSEC+FGLNLNPM K SE SYTI
Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTI 360
Query: 357 MPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIITNYTGVYRYKVGDILR 416
MPNMAYFEFL H+ S + D PP+LVDL VEVGKEYE +IT Y G+YRY+VGDILR
Sbjct: 361 MPNMAYFEFLPHEHSSIPLSRD-SPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILR 419
Query: 417 VAGFHNASPHFHFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEK 476
V GFHN++P FHFVRRK+ LLSID DKTDEA+LQKAV+NAS+LLRE +T ++EYTS+A+
Sbjct: 420 VTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT 479
Query: 477 KTNPGHHVIYWEILVKDPANSPTDDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLV 536
KT PGH+VIYWE+LVKD ANSP+D++L QCCLAMEESL+S YR+ RV D +IGPLEIR+V
Sbjct: 480 KTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVV 539
Query: 537 KTGTFEELMDYAISRGASINQYKVARCVGSTSILKLLDSRVISKHFSPSLPHWT 590
K+GTFEELMDYAISRGASINQYKV RCV T I++LLDSRV+S HFSP+LPHWT
Sbjct: 540 KSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWT 593
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 526 bits (1356), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/569 (44%), Positives = 379/569 (66%), Gaps = 20/569 (3%)
Query: 26 IEEITRNAATFQETVLAEILSRNANSEYLQRYKLGGATDRETFKLKLPVITYEDIKPDIQ 85
++++T N + Q+ +L EI++ N +EYLQR+ L D+E FK +P+++YEDIKP +
Sbjct: 21 LKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLD 79
Query: 86 RMADGDRSAVLLASPISEFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPD 145
R+ +G+ S V+ A I+ FL SSGTS G QK+ P + LD F L V+ + V
Sbjct: 80 RVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKG 139
Query: 146 LDKGKGLYFLFVRPETRTPGGLLVRPASNSMYKSDHFKTR----LHDYTSPIEAILCADS 201
+++GKG+ FLF + E+ TP GL R A++S +KSD+FK R + YTSP E ILC ++
Sbjct: 140 VEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 202 FQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQIHWQALANDIETGTLNQKITDPS 261
+S+Y H+LCGL++R++V+R G++FAS ++RA+ L+ W+ L ++I +G L+ +TD
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 262 IRDCMARILK-PRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSMAQYIHLLDY 320
++ ++ +L PRPELA+ I C++ +W+GI+ R+WPNTKY++ V TGSM QY+ +L+Y
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNY 319
Query: 321 YSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQ 380
Y LP+ S Y SSE FG+NL+P+CK + SYT MPNM+YFEF+ D G
Sbjct: 320 YCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKND----- 374
Query: 381 PPKLVDLVDVEVGKEYEPIITNYTGVYRYKVGDILRVAGFHNASPHFHFVRRKDALLSID 440
+VDL DV++G YEP++TN+ G+YR +VGDI+ V GF+N +P F FVRR++ +LSID
Sbjct: 375 ---VVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431
Query: 441 YDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGHHVIYWEILVKDPANSPT- 499
DKT+E DL KAV A +L + ++TSYA+ T PGH+V+Y E+ K+ T
Sbjct: 432 SDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETA 491
Query: 500 -----DDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKTGTFEELMDYAISRGAS 554
++ L CCL MEESLD+ Y+ R D +IGPLEIR+V+ GTF+ LMD+ IS+GAS
Sbjct: 492 QFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGAS 551
Query: 555 INQYKVARCVGSTSILKLLDSRVISKHFS 583
QYK RC+ S L++L++ V++K FS
Sbjct: 552 TGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 507 bits (1306), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/569 (43%), Positives = 370/569 (65%), Gaps = 20/569 (3%)
Query: 26 IEEITRNAATFQETVLAEILSRNANSEYLQRYKLGGATDRETFKLKLPVITYEDIKPDIQ 85
++++T N + Q+ +L EI++ N +EYLQR+ L D+E FK +P+++YEDIKP +
Sbjct: 21 LKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLD 79
Query: 86 RMADGDRSAVLLASPISEFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPD 145
R+ +G+ S V+ A I+ FL SSGTS G QK P + LD F L V+ + V
Sbjct: 80 RVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDLRXQVITKHVKG 139
Query: 146 LDKGKGLYFLFVRPETRTPGGLLVRPASNSMYKSDHFKTR----LHDYTSPIEAILCADS 201
+++GKG FLF + E+ TP GL R A++S +KSD+FK R + YTSP E ILC ++
Sbjct: 140 VEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 202 FQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQIHWQALANDIETGTLNQKITDPS 261
+S+Y H+LCGL++R++V+R G++FAS +RA+ L+ W+ L ++I +G L+ +TD
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 262 IRDCMARILK-PRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSMAQYIHLLDY 320
++ ++ +L PRPELA+ I C++ +W+GI+ R+WPNTKY++ V TGS QY+ L+Y
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSXGQYVPXLNY 319
Query: 321 YSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQ 380
Y LP+ S Y SSE FG+NL+P+CK + SYT PN +YFEF+ D G
Sbjct: 320 YCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDGGDKND----- 374
Query: 381 PPKLVDLVDVEVGKEYEPIITNYTGVYRYKVGDILRVAGFHNASPHFHFVRRKDALLSID 440
+VDL DV++G YEP++TN+ G+YR +VGDI+ V GF+N +P F FVRR++ +LSID
Sbjct: 375 ---VVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431
Query: 441 YDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGHHVIYWEILVKDPANSPT- 499
DKT+E DL KAV A +L + ++TSYA+ T PGH+V+Y E+ K+ T
Sbjct: 432 SDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETA 491
Query: 500 -----DDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKTGTFEELMDYAISRGAS 554
++ L CCL EESLD+ Y+ R D +IGPLEIR+V+ GTF+ L D+ IS+GAS
Sbjct: 492 QFELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLXDFFISQGAS 551
Query: 555 INQYKVARCVGSTSILKLLDSRVISKHFS 583
QYK RC+ S L++L++ V++K FS
Sbjct: 552 TGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/576 (38%), Positives = 344/576 (59%), Gaps = 22/576 (3%)
Query: 21 KALQYIEEITRNAATFQETVLAEILSRNANSEYLQRYKLGG-ATD-RETFKLKLPVITYE 78
+ + +E+TRNA Q+ L EIL +N ++ YLQ L G ATD E FK +P++T
Sbjct: 18 RVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDV 77
Query: 79 DIKPDIQRMADGDRSAVLLASPISEFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAV 138
+++P I+RM DGD S +L P+ SSGTS G K P T E ++ A
Sbjct: 78 ELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAF 137
Query: 139 MNRCVPDLDKGKGLYFLFVRPETRTPGGLLVRPASNSMYKSDHFKTRLHDYTSPI----E 194
NR P D GK L F+F + + GG+ V A+ ++Y++ +FK + TSP E
Sbjct: 138 RNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDE 197
Query: 195 AILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQIHWQALANDIETGTLN 254
I D Q++Y H+L G+L R+QV + A+FA GL+ A R + W+ + DI+ G L+
Sbjct: 198 VIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLS 257
Query: 255 QKITDPSIRDCMARILKPRPELAELIRMEC-SEENWEGIIARIWPNTKYLDAVATGSMAQ 313
+IT PS+R M+++L P PELAE IR +C S NW G+I ++PN KY+ + TGSM
Sbjct: 258 NRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEP 317
Query: 314 YIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSP 373
Y+ L +Y+G LP+ S Y SSE + N+ P EA++ ++PN+ YFEFL P
Sbjct: 318 YVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFL------P 371
Query: 374 ASTSDFQPPKLVDLVDVEVGKEYEPIITNYTGVYRYKVGDILRVAGFHNASPHFHFVRRK 433
S + K V L V++G+EYE +ITNY G+YRY++GD+++V GF+N +P F+ R+
Sbjct: 372 VSETGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRR 431
Query: 434 DALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGHHVIYWEILVKD 493
+ +LSI+ DK E DLQ +VE+A++ L E +++++SY + T+PGH+ I+WEI
Sbjct: 432 NLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEI---- 487
Query: 494 PANSPTDDVLKQCCLAMEES-LDSAYREARVVDKTIGPLEIRLVKTGTFEELMDYAISRG 552
+ +DVL+ CC ++ + +D+ Y +R KTIG LE+R+V GTF ++ ++ + G
Sbjct: 488 -SGETNEDVLQDCCNCLDRAFIDAGYVSSRKC-KTIGALELRVVAKGTFRKIQEHFLGLG 545
Query: 553 ASINQYKVARCV--GSTSILKLLDSRVISKHFSPSL 586
+S Q+K+ RCV + +L++L V+S +FS +
Sbjct: 546 SSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581
>pdb|2G7S|A Chain A, The Crystal Structure Of Transcriptional Regulator, Tetr
Family, From Agrobacterium Tumefaciens
Length = 194
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 405 GVYRYKVGDILRVAGFHNASPHFHFVRRKDALLSI--DYDKTDEADLQKAVENASRLLRE 462
G + DI +V G NAS H HF + D + + Y + EA + + +N S L +
Sbjct: 25 GYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQ 84
Query: 463 FDTRILEYTSYAEKKTNP 480
I + T+P
Sbjct: 85 LRAYIGYWEGCIADATHP 102
>pdb|4ICH|A Chain A, Crystal Structure Of A Putative Tetr Family
Transcriptional Regulator From Saccharomonospora Viridis
Dsm 43017
pdb|4ICH|B Chain B, Crystal Structure Of A Putative Tetr Family
Transcriptional Regulator From Saccharomonospora Viridis
Dsm 43017
Length = 311
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 405 GVYRYKVGDILRVAGFHNASPHFHFVRRKDALL 437
G + ++ DI G NA+ H+HF +KD LL
Sbjct: 137 GYHNVRIHDIASELGTSNATIHYHFPSKKDILL 169
>pdb|1Z25|A Chain A, Structure Of P.Furiosus Argonaute With Bound Mn2+
pdb|1Z26|A Chain A, Structure Of Pyrococcus Furiosus Argonaute With Bound
Tungstate
Length = 771
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 55 QRYKLGGATDRETFKLKLPVITYEDIKPDIQRMADGDRSAVLLASPISEFLKSSGTS--- 111
++Y R T ++ LP + + + I + D+ + + +S F+K
Sbjct: 418 KKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAF 477
Query: 112 -SGEQKLFPSTQEELDRRHFQISLLRAVMN 140
+ KL EE+ RR F ++++ V+N
Sbjct: 478 IAARNKLSSEKFEEIKRRLFNLNVISQVVN 507
>pdb|2UYF|A Chain A, Single Mutant F111l Dntr From Burkholderia Sp. Strain Dnt
In Complex With Thiocyanate
pdb|2UYF|B Chain B, Single Mutant F111l Dntr From Burkholderia Sp. Strain Dnt
In Complex With Thiocyanate
Length = 307
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 110 TSSGEQKLFPSTQEELDRR--HFQISLLRAVMNRCVPDLDKGKGLYFLFVRPETRTPGGL 167
T GE L P E L +R H QIS LR D++ G L + PE +T G
Sbjct: 104 TDIGEMYLMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQT--GF 161
Query: 168 ----LVRPASNSMYKSDH 181
L R M++ DH
Sbjct: 162 FQRRLFRHRYVCMFRKDH 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,555,561
Number of Sequences: 62578
Number of extensions: 730507
Number of successful extensions: 1630
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 12
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)