Query 007728
Match_columns 591
No_of_seqs 168 out of 916
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b2g_A GH3-1 auxin conjugating 100.0 1E-130 3E-135 1091.3 47.5 589 1-590 1-593 (609)
2 4epl_A Jasmonic acid-amido syn 100.0 1E-127 4E-132 1062.6 51.0 567 7-586 3-581 (581)
3 4eql_A 4-substituted benzoates 100.0 1E-127 5E-132 1065.0 43.5 567 7-583 3-580 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 2.7E-24 9.1E-29 232.4 26.3 388 26-543 11-421 (436)
5 2y4o_A Phenylacetate-coenzyme 99.9 3.4E-23 1.1E-27 224.2 27.6 385 30-542 22-426 (443)
6 2y27_A Phenylacetate-coenzyme 99.9 2.1E-23 7.1E-28 225.5 24.9 384 30-542 20-422 (437)
7 3hgu_A EHPF; phenazine, antibi 99.7 2.7E-16 9.2E-21 165.9 16.4 309 35-441 21-367 (369)
8 3etc_A AMP-binding protein; ad 99.7 1.5E-14 5.1E-19 162.2 26.7 129 302-455 342-496 (580)
9 2d1s_A Luciferase, luciferin 4 99.6 7.6E-14 2.6E-18 155.1 26.0 130 303-455 311-462 (548)
10 3ni2_A 4-coumarate:COA ligase; 99.6 2.8E-14 9.6E-19 158.1 21.3 131 302-455 298-455 (536)
11 3e7w_A D-alanine--poly(phospho 99.6 7.7E-14 2.6E-18 153.5 23.6 132 296-455 258-419 (511)
12 3fce_A D-alanine--poly(phospho 99.6 3.4E-14 1.2E-18 156.3 20.6 128 303-455 263-420 (512)
13 4fuq_A Malonyl COA synthetase; 99.6 3.3E-14 1.1E-18 156.4 19.7 131 303-455 270-420 (503)
14 1pg4_A Acetyl-COA synthetase; 99.6 2.8E-13 9.5E-18 153.9 26.7 231 300-578 377-646 (652)
15 3rix_A Luciferase, luciferin 4 99.6 2.1E-14 7.1E-19 159.6 16.7 134 302-456 308-461 (550)
16 1t5h_X 4-chlorobenzoyl COA lig 99.6 1.2E-13 4.2E-18 151.6 21.1 130 302-455 273-423 (504)
17 2v7b_A Benzoate-coenzyme A lig 99.6 1.4E-13 4.8E-18 152.0 21.0 128 303-455 302-450 (529)
18 3kxw_A Saframycin MX1 syntheta 99.5 9.6E-14 3.3E-18 155.1 19.0 63 389-456 393-480 (590)
19 3ivr_A Putative long-chain-fat 99.5 1.4E-14 4.7E-19 159.3 11.6 130 303-456 274-422 (509)
20 3g7s_A Long-chain-fatty-acid-- 99.5 4.6E-14 1.6E-18 156.7 15.8 130 303-455 298-460 (549)
21 3nyq_A Malonyl-COA ligase; A/B 99.5 3.3E-13 1.1E-17 148.4 21.9 131 303-455 274-427 (505)
22 3c5e_A Acyl-coenzyme A synthet 99.5 6.9E-13 2.4E-17 148.2 24.6 128 303-455 324-477 (570)
23 3gqw_A Fatty acid AMP ligase; 99.5 3.1E-13 1.1E-17 150.2 20.9 131 300-455 298-482 (576)
24 3l8c_A D-alanine--poly(phospho 99.5 4.9E-14 1.7E-18 155.3 14.2 129 303-455 266-424 (521)
25 3o83_A Peptide arylation enzym 99.5 3.9E-14 1.3E-18 157.3 13.2 130 303-456 309-461 (544)
26 4gr5_A Non-ribosomal peptide s 99.5 8.1E-14 2.8E-18 155.6 15.7 130 303-456 328-491 (570)
27 1mdb_A 2,3-dihydroxybenzoate-A 99.5 1.9E-13 6.4E-18 151.6 18.0 128 303-455 300-451 (539)
28 3r44_A Fatty acyl COA syntheta 99.5 1.1E-13 3.7E-18 152.8 15.2 126 303-455 286-434 (517)
29 1ry2_A Acetyl-coenzyme A synth 99.5 5.3E-13 1.8E-17 152.0 21.1 234 300-575 383-659 (663)
30 3ite_A SIDN siderophore synthe 99.5 2.3E-13 8E-18 151.3 16.6 131 303-456 296-449 (562)
31 3rg2_A Enterobactin synthase c 99.5 2E-13 7E-18 153.8 15.7 129 303-455 304-455 (617)
32 3tsy_A Fusion protein 4-coumar 99.5 2.3E-13 7.8E-18 161.4 15.6 133 301-456 344-503 (979)
33 3ipl_A 2-succinylbenzoate--COA 99.4 2E-12 6.7E-17 141.7 18.8 122 303-455 276-419 (501)
34 1amu_A GRSA, gramicidin synthe 99.4 1.1E-12 3.8E-17 146.3 16.7 129 303-455 295-451 (563)
35 4dg8_A PA1221; ANL superfamily 99.4 8.1E-13 2.8E-17 149.3 15.4 130 303-455 278-440 (620)
36 1v25_A Long-chain-fatty-acid-C 99.4 4E-12 1.4E-16 140.9 14.9 128 303-456 295-457 (541)
37 4gs5_A Acyl-COA synthetase (AM 99.3 3.5E-12 1.2E-16 134.4 9.3 117 303-456 150-272 (358)
38 2vsq_A Surfactin synthetase su 99.3 4.1E-11 1.4E-15 146.2 17.4 129 303-455 722-882 (1304)
39 3t5a_A Long-chain-fatty-acid-- 98.7 1.3E-07 4.6E-12 102.2 14.3 28 99-127 183-210 (480)
40 3lax_A Phenylacetate-coenzyme 97.3 0.00045 1.5E-08 59.4 7.2 93 432-543 2-94 (109)
41 3gxs_A Phenylacetate-coenzyme 97.1 0.002 6.7E-08 55.4 8.8 94 431-543 1-94 (109)
42 3onr_A Protein transport prote 46.9 86 0.003 24.5 7.6 49 443-492 16-65 (72)
43 2cc6_A VNG1446H, dodecin; flav 46.1 1E+02 0.0034 23.8 7.8 48 443-491 14-62 (68)
44 2ux9_A Dodecin; flavoprotein; 35.1 1E+02 0.0035 23.9 6.3 56 427-491 8-64 (69)
45 2vxa_A Dodecin; flavoprotein, 34.2 1E+02 0.0036 24.0 6.3 56 427-491 9-65 (72)
46 2yiz_A Dodecin; flavoprotein, 34.0 1.1E+02 0.0037 23.7 6.3 56 427-491 8-64 (69)
No 1
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=9.7e-131 Score=1091.32 Aligned_cols=589 Identities=72% Similarity=1.158 Sum_probs=523.4
Q ss_pred CCccccccCCCCCCcchhhHHHHHHHHHHHHcHHHHHHHHHHHHHHhcCCChhhhhcCCCCCCCHHHHhhcCCCcccccc
Q 007728 1 MTSDFALSSPLVPRVSEKDAKALQYIEEITRNAATFQETVLAEILSRNANSEYLQRYKLGGATDRETFKLKLPVITYEDI 80 (591)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~gf~~i~s~edf~~~vPl~~Yed~ 80 (591)
|.-|-.++|++.-...+++++.++.||..++|+.++|+++|++||++|++|+|||+|||++|++++||+++|||++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl 80 (609)
T 4b2g_A 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDL 80 (609)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHH
T ss_pred CCccccccCchhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHH
Confidence 56678888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCCcccccccccceeecccccCCCccccccCChHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEEecCCC
Q 007728 81 KPDIQRMADGDRSAVLLASPISEFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPDLDKGKGLYFLFVRPE 160 (591)
Q Consensus 81 ~p~ier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~iP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~ 160 (591)
+|||+||++||.++|||++||.+|+.|||||||++|+||+|+++++.+..++.+|..++++.+|++..||.|++.+++.+
T Consensus 81 ~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~ 160 (609)
T 4b2g_A 81 QPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSE 160 (609)
T ss_dssp HHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCC
T ss_pred HHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCc
Confidence 99999999999879999999999999999999999999999999999888899999999988998888999998888888
Q ss_pred ccCCCCceecccCCcccCcchhhcccc----cccCchhhhhcCChhhhHHHHHHhhcccccceeEEeecchHHHHHHHHH
Q 007728 161 TRTPGGLLVRPASNSMYKSDHFKTRLH----DYTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRF 236 (591)
Q Consensus 161 ~~t~~Gip~g~~s~~~~~~~~~~~~~~----~~~~P~ev~~~~d~~~~~Y~~ll~~L~~~~~~~~i~~~~~~~ll~~~~~ 236 (591)
..|++|+|+|++|+.++++++|+++|. .|++|.+++.++|..+++||||||||.++++++.|+++|+++++++++.
T Consensus 161 ~~t~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~ 240 (609)
T 4b2g_A 161 TRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240 (609)
T ss_dssp EECTTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHH
T ss_pred ccCCCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHH
Confidence 899999999999999999999988874 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChhhhhHHhhhcCCcHHHHHHHHHHhccccccccccccCCCCceeeEEEecChHHHHH
Q 007728 237 LQIHWQALANDIETGTLNQKITDPSIRDCMARILKPRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSMAQYIH 316 (591)
Q Consensus 237 l~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~ 316 (591)
|+++|+++|+||++|+++++++++.+|+++.+.++|+|++|++|+++|++.+|.|++++|||||++|.||++|||++|++
T Consensus 241 L~~~Weel~~dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~ 320 (609)
T 4b2g_A 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIP 320 (609)
T ss_dssp HHHHHHHHHHHHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHH
T ss_pred HHHHHHHHHHHHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999779999999999999999999999999999
Q ss_pred HHHHHhCCCCeeccccccccccccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceE
Q 007728 317 LLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEY 396 (591)
Q Consensus 317 ~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~y 396 (591)
+++.++||+|+++.+|+||||++|+|+++.|+|+..+|+|+|+.+||||||.++.+.+.. .+..+++|+++||++|++|
T Consensus 321 ~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~-~~~~~~~v~l~eVe~G~~Y 399 (609)
T 4b2g_A 321 TLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLS-RDSPPRLVDLAHVEVGKEY 399 (609)
T ss_dssp HHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCC-SSSCCCCEEGGGCCTTCEE
T ss_pred HHHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccccc-cCCCCccccHhHcCCCCeE
Confidence 999999999999999999999999999999998788999999999999999886411000 1124459999999999999
Q ss_pred EEEEccccceeccccCCEEEEccccCCCCeEEEeeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecC
Q 007728 397 EPIITNYTGVYRYKVGDILRVAGFHNASPHFHFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEK 476 (591)
Q Consensus 397 elvvTt~~GlyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~ 476 (591)
||||||.+||||||+||+|+|+||++.+|+|+|+||.+++||++||||+|++|++||.+|++.|+++|++|.|||+++|.
T Consensus 400 elViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~ 479 (609)
T 4b2g_A 400 ELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT 479 (609)
T ss_dssp EEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC
T ss_pred EEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999998787789999999999988
Q ss_pred CCCCceeEEEEEEeecCCCCCCChHHHHHHHHHHHhhhCHHHHHhhhccCccCCeEEEEeCCccHHHHHHHHHhcCCCCC
Q 007728 477 KTNPGHHVIYWEILVKDPANSPTDDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKTGTFEELMDYAISRGASIN 556 (591)
Q Consensus 477 ~~~p~~Y~l~~E~~~~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~ 556 (591)
++.||||+||||++..+....++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|.+|+++++++|++++
T Consensus 480 ~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~g 559 (609)
T 4b2g_A 480 KTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASIN 559 (609)
T ss_dssp SSSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC-------------
T ss_pred CCCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCC
Confidence 88999999999997421111346789999999999999999999997778999999999999999999999999999999
Q ss_pred CCccccccCCHhHHHHHhhcchheeccCCCCCCC
Q 007728 557 QYKVARCVGSTSILKLLDSRVISKHFSPSLPHWT 590 (591)
Q Consensus 557 Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 590 (591)
|||+|||+++++++++|+++||++|+|+++|.|+
T Consensus 560 Q~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~ 593 (609)
T 4b2g_A 560 QYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWT 593 (609)
T ss_dssp ---CCSSCC--CCHHHHHTTEEEEEECCSCCCCC
T ss_pred CcCCCcccCCHHHHHHHHhcccccccCCCCCCCC
Confidence 9999999999999999999999999999999997
No 2
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-127 Score=1062.65 Aligned_cols=567 Identities=38% Similarity=0.683 Sum_probs=515.7
Q ss_pred ccCCCCC-CcchhhHHHHHHHHHHHHcHHHHHHHHHHHHHHhcCCChhhhhcCCCCC-CCHH-HHhhcCCCcccccccHH
Q 007728 7 LSSPLVP-RVSEKDAKALQYIEEITRNAATFQETVLAEILSRNANSEYLQRYKLGGA-TDRE-TFKLKLPVITYEDIKPD 83 (591)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~gf~~i-~s~e-df~~~vPl~~Yed~~p~ 83 (591)
||..+.+ ...+++++.++.||..++|+.++|+++|++||+.|++|+|||+|||++| ++++ |||++|||++|||++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~py 82 (581)
T 4epl_A 3 HMARMLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPY 82 (581)
T ss_dssp ----------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHH
T ss_pred hHhhhhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHH
Confidence 4555555 3455688889999999999999999999999999999999999999999 9999 99999999999999999
Q ss_pred HHHHhcCCCcccccccccceeecccccCCCccccccCChHHHHHHHHHHHHHHHHHhccCCCCC-CCCeEEEEecCCCcc
Q 007728 84 IQRMADGDRSAVLLASPISEFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPDLD-KGKGLYFLFVRPETR 162 (591)
Q Consensus 84 ier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~iP~T~~~l~~~~~~~~~~~~~~~~~~p~~~-~gk~l~~~~~~~~~~ 162 (591)
|+||++||.++|||++||.+|++|||||+|++|+||+|+++++.+..++.++..++++ +|.+. .||.|++.+++++..
T Consensus 83 IeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~ 161 (581)
T 4epl_A 83 IKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYI 161 (581)
T ss_dssp HHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEE
T ss_pred HHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCccc
Confidence 9999999977999999999999999999999999999999999987777788777765 78888 899999888999999
Q ss_pred CCCCceecccCCcccCcchhhcccc----cccCchhhhhcCChhhhHHHHHHhhcccccceeEEeecchHHHHHHHHHHH
Q 007728 163 TPGGLLVRPASNSMYKSDHFKTRLH----DYTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQ 238 (591)
Q Consensus 163 t~~Gip~g~~s~~~~~~~~~~~~~~----~~~~P~ev~~~~d~~~~~Y~~ll~~L~~~~~~~~i~~~~~~~ll~~~~~l~ 238 (591)
|++|+|+|++|+.++++.+|+++|. .|++|.+++.++|..+++||||||||.+++++..|+++|+++|+++++.|+
T Consensus 162 t~~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~ 241 (581)
T 4epl_A 162 STGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFE 241 (581)
T ss_dssp CTTSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHH
T ss_pred CCCCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHH
Confidence 9999999999999999988877654 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCChhhhhHHhhhcCCcHHHHHHHHHHhccc-cccccccccCCCCceeeEEEecChHHHHHH
Q 007728 239 IHWQALANDIETGTLNQKITDPSIRDCMARILKPRPELAELIRMECSEE-NWEGIIARIWPNTKYLDAVATGSMAQYIHL 317 (591)
Q Consensus 239 ~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~-~~~g~~~~lWP~l~~l~~~~~g~~~~y~~~ 317 (591)
++|+++|+||++|+++++++++.+|.++.+.++|+|++|++|+++|++. +|.|++++|||||++|.||++|+|.+|+++
T Consensus 242 ~~We~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~ 321 (581)
T 4epl_A 242 QVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPK 321 (581)
T ss_dssp HHHHHHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHH
T ss_pred HHHHHHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 799999999999999999999999999999
Q ss_pred HHHHhCCCCeeccccccccccccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceEE
Q 007728 318 LDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYE 397 (591)
Q Consensus 318 l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~ye 397 (591)
+++++|++|+++.+|+||||++|+|+++.|+++..+|+|+|+.+||||||.++.++ ..+.+|+++||++|++||
T Consensus 322 l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~------~~~~~v~l~eve~G~~Ye 395 (581)
T 4epl_A 322 LRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE------GEEKPVGLTQVKIGEEYE 395 (581)
T ss_dssp HHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEE
T ss_pred HHHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC------CCCceeeHHHcCCCCeEE
Confidence 99999999999999999999999999999998788999999999999999886532 234599999999999999
Q ss_pred EEEccccceeccccCCEEEEccccCCCCeEEEeeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCC
Q 007728 398 PIITNYTGVYRYKVGDILRVAGFHNASPHFHFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKK 477 (591)
Q Consensus 398 lvvTt~~GlyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~ 477 (591)
|||||.+||||||+||+|+|+||+|.+|+|+|+||.+++||++|||++|++|++||.+|++.|+++|++|.|||+++|.+
T Consensus 396 lviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~ 475 (581)
T 4epl_A 396 VVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS 475 (581)
T ss_dssp EEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS
T ss_pred EEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988877899999999999888
Q ss_pred CCCceeEEEEEEeecCCCCCCChHHHHHHHHHHHhhh-CHHHHHhhhccCccCCeEEEEeCCccHHHHHHHHHhcCCCCC
Q 007728 478 TNPGHHVIYWEILVKDPANSPTDDVLKQCCLAMEESL-DSAYREARVVDKTIGPLEIRLVKTGTFEELMDYAISRGASIN 556 (591)
Q Consensus 478 ~~p~~Y~l~~E~~~~~~~~~~~~~~~~~~~~~ld~~L-n~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~ 556 (591)
+.||||+||||++ + .++.+.+++||..||++| |++|+.+| ..|+|+||+|++|++|+|.+|+++++++|++++
T Consensus 476 ~~p~hyv~~wE~~--~---~~~~~~l~~~~~~Ld~~L~n~~Y~~~R-~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~ 549 (581)
T 4epl_A 476 TDPGHYAIFWEIS--G---ETNEDVLQDCCNCLDRAFIDAGYVSSR-KCKTIGALELRVVAKGTFRKIQEHFLGLGSSAG 549 (581)
T ss_dssp SSSCEEEEEEEES--S---CCCHHHHHHHHHHHHHHCCCHHHHHHH-HHTSSCCCEEEEECTTHHHHHHHHHHTTC----
T ss_pred CCCCcEEEEEeec--C---CCCHHHHHHHHHHHHHHhCChhHHHHH-hcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCC
Confidence 8899999999985 2 245678999999999999 99999999 567999999999999999999999999999999
Q ss_pred CCcccccc--CCHhHHHHHhhcchheeccCCC
Q 007728 557 QYKVARCV--GSTSILKLLDSRVISKHFSPSL 586 (591)
Q Consensus 557 Q~K~Pr~~--~~~~~~~~l~~~~~~~~~~~~~ 586 (591)
|||+|||+ ++++++++|+++||++|+|+++
T Consensus 550 Q~K~PR~~~~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 550 QFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp --CCCSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred CcCCCeeecCCCHHHHHHHHhcccccccCCCC
Confidence 99999999 9999999999999999999875
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=1.4e-127 Score=1065.03 Aligned_cols=567 Identities=45% Similarity=0.824 Sum_probs=468.0
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHcHHHHHHHHHHHHHHhcCCChhhhhcCCCCCCCHHHHhhcCCCcccccccHHHHH
Q 007728 7 LSSPLVPRVSEKDAKALQYIEEITRNAATFQETVLAEILSRNANSEYLQRYKLGGATDRETFKLKLPVITYEDIKPDIQR 86 (591)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~gf~~i~s~edf~~~vPl~~Yed~~p~ier 86 (591)
||+-.+| ..+++++.++.||+.++|+.++|+++|++||+.|++|+|||+| |++|++++|||++|||++|||++|||+|
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeR 80 (581)
T 4eql_A 3 HMASMKP-IFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDR 80 (581)
T ss_dssp ------------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHH
T ss_pred ccccccc-ccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHH
Confidence 4444444 3456778889999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhcCCCcccccccccceeecccccCCCccccccCChHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEEecCCCccCCCC
Q 007728 87 MADGDRSAVLLASPISEFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPDLDKGKGLYFLFVRPETRTPGG 166 (591)
Q Consensus 87 ~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~iP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~G 166 (591)
+++||.++|||++||.+|++|||||||++|+||+|+++++.+.+++.+|..++++++|.+..||.|++++...+..|++|
T Consensus 81 i~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G 160 (581)
T 4eql_A 81 VVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSG 160 (581)
T ss_dssp HHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTS
T ss_pred HHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCC
Confidence 99999889999999999999999998899999999999999888899999999999999888999999888888899999
Q ss_pred ceecccCCcccCcchhhcccc----cccCchhhhhcCChhhhHHHHHHhhcccccceeEEeecchHHHHHHHHHHHHHHH
Q 007728 167 LLVRPASNSMYKSDHFKTRLH----DYTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQIHWQ 242 (591)
Q Consensus 167 ip~g~~s~~~~~~~~~~~~~~----~~~~P~ev~~~~d~~~~~Y~~ll~~L~~~~~~~~i~~~~~~~ll~~~~~l~~~w~ 242 (591)
+|+|++|+.++++++|+++|. .|++|.+++.++|..+++||||||||.++++++.|+++|+++++++++.|+++|+
T Consensus 161 ~~~g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~we 240 (581)
T 4eql_A 161 LPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWE 240 (581)
T ss_dssp CEEECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred eeecccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHH
Confidence 999999999999999988874 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCChhhhhHHhhhcC-CcHHHHHHHHHHhccccccccccccCCCCceeeEEEecChHHHHHHHHHH
Q 007728 243 ALANDIETGTLNQKITDPSIRDCMARILK-PRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSMAQYIHLLDYY 321 (591)
Q Consensus 243 ~l~~dI~~g~~~~~~~~~~~r~~l~~~l~-~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~~l~~~ 321 (591)
++|+||++|+++++++++.+|++|...|+ |||++|++|+++|++.+|.|++++|||||++|.||++|||++|+++++++
T Consensus 241 el~~dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~ 320 (581)
T 4eql_A 241 ELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYY 320 (581)
T ss_dssp HHHHHHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHH
T ss_pred HHHHHHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999999877899999999999999999999999999999999
Q ss_pred hCCCCeeccccccccccccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceEEEEEc
Q 007728 322 SGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIIT 401 (591)
Q Consensus 322 ~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~yelvvT 401 (591)
+|++|+++.+|+||||++|+|+++.|+++..+|+|+|+.+||||||.++.+ .+.+++++|||.|++||||||
T Consensus 321 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~--------~~~~v~l~eVe~G~~YelViT 392 (581)
T 4eql_A 321 CNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD--------KNDVVDLEDVKLGCTYEPVVT 392 (581)
T ss_dssp HTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTC--------CSSCEEGGGCCTTCEEEEEEE
T ss_pred cCCCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccC--------CCcEeCHHHcCCCceEEEEEe
Confidence 999999999999999999999999999877899999999999999988642 345999999999999999999
Q ss_pred cccceeccccCCEEEEccccCCCCeEEEeeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCc
Q 007728 402 NYTGVYRYKVGDILRVAGFHNASPHFHFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPG 481 (591)
Q Consensus 402 t~~GlyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~ 481 (591)
|.+||||||+||+|+|+||++.+|+|+|+||.+++||++|||++|++|++||.+|++.|+++|++|.|||+++|.++.||
T Consensus 393 t~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~ 472 (581)
T 4eql_A 393 NFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPG 472 (581)
T ss_dssp CSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSSSB
T ss_pred eccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998777678999999999998888999
Q ss_pred eeEEEEEEeecC------CCCCCChHHHHHHHHHHHhhhCHHHHHhhhccCccCCeEEEEeCCccHHHHHHHHHhcCCCC
Q 007728 482 HHVIYWEILVKD------PANSPTDDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKTGTFEELMDYAISRGASI 555 (591)
Q Consensus 482 ~Y~l~~E~~~~~------~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~ 555 (591)
||+||||++..+ ...+++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|.+|+++++++|+++
T Consensus 473 Hy~~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~ 552 (581)
T 4eql_A 473 HYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGAST 552 (581)
T ss_dssp EEEEECC---------------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC--------------------
T ss_pred eEEEEEEEecccccccccccCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCC
Confidence 999999997411 01124557999999999999999999999777899999999999999999999999999999
Q ss_pred CCCccccccCCHhHHHHHhhcchheecc
Q 007728 556 NQYKVARCVGSTSILKLLDSRVISKHFS 583 (591)
Q Consensus 556 ~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~ 583 (591)
||||+|||+++++++++|+++||++|+|
T Consensus 553 gQ~K~PR~~~~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 553 GQYKTPRCIKSGKALQVLETCVVAKFFS 580 (581)
T ss_dssp ------------------------CEEC
T ss_pred CCcCCCcccCCHHHHHHHHhcchheeec
Confidence 9999999999999999999999999998
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.93 E-value=2.7e-24 Score=232.39 Aligned_cols=388 Identities=16% Similarity=0.147 Sum_probs=232.9
Q ss_pred HHHH-HHcHHHHHHHHHHHHHHhcCCChhhhhc----CCC--CCCCHHHHhhcCCCcccccccHHHHHHhcCCCcccccc
Q 007728 26 IEEI-TRNAATFQETVLAEILSRNANSEYLQRY----KLG--GATDRETFKLKLPVITYEDIKPDIQRMADGDRSAVLLA 98 (591)
Q Consensus 26 ~e~~-~~~~~~~Q~~~L~~iL~~~~~t~ygr~~----gf~--~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~ 98 (591)
+|.+ .++.++.|.+.|++++++..+++|||++ |+. ++.+++|++ ++|++++++++.... .+. .-...
T Consensus 11 ~e~~~~~~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~ 84 (436)
T 3qov_A 11 IEIMSREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP---FGL--VAGDM 84 (436)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT---TTT--CCSCH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Ccc--ccCCC
Confidence 4554 5778999999999999888999999964 553 688999996 899999999875321 111 11122
Q ss_pred -cccceeecccccCCCccccccCChHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEEecCCCccCCCCceecccCCccc
Q 007728 99 -SPISEFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPDLDKGKGLYFLFVRPETRTPGGLLVRPASNSMY 177 (591)
Q Consensus 99 -~pi~~f~~TSGTT~G~~K~iP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~ 177 (591)
+.+.++..||||| |+||-++.|+..+..+.....-. + . ..++..++.+... .+..+..+++
T Consensus 85 ~~~~a~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~~~---~-~-~~~~~~~d~~~~~--~~~~~~~~~~---------- 146 (436)
T 3qov_A 85 KRDGVRIHSSSGTT-GNPTVIVHSQHDLDSWANLVARC---L-Y-MVGIRKTDVFQNS--SGYGMFTGGL---------- 146 (436)
T ss_dssp HHHEEEEEECSCSS-SCCCEEEEEHHHHHHHHHHHHHH---H-H-HTTCCTTSEEEEC--SCCTTCHHHH----------
T ss_pred cCCeEEEEECCCcC-CCCeEEEECHHHHHHHHHHHHHH---H-H-HcCCCCCCEEEEC--cccccchhHH----------
Confidence 4456889999999 89999999998765543222111 1 0 1123445544322 1100011110
Q ss_pred CcchhhcccccccCchhhhhcCChhhhHHHHHHhhcccccceeEEeecchHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007728 178 KSDHFKTRLHDYTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQIHWQALANDIETGTLNQKI 257 (591)
Q Consensus 178 ~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~ll~~L~~~~~~~~i~~~~~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~~ 257 (591)
...+..+..|. .+.......+ +.+++.|++..+..-.
T Consensus 147 -------------------------~~~~~~l~~G~----~~~~~~~~~~--------------~~~~~~i~~~~~t~~~ 183 (436)
T 3qov_A 147 -------------------------GFQYGAERLGC----LTVPAAAGNS--------------KRQIKFISDFKTTALH 183 (436)
T ss_dssp -------------------------HHHHHHHHHTC----EEECCCSCCH--------------HHHHHHHHHHTCCEEE
T ss_pred -------------------------HHHHHHHHcCC----EEEeCCCCCH--------------HHHHHHHHHHCCCEEE
Confidence 01122233333 1222221222 2233334433222211
Q ss_pred CChhhhhHHhhhcCCcHHHHHHHHHHhccccccccccccCCCCceeeEEEecCh---HHHHHHHHHHhCCCCeecccccc
Q 007728 258 TDPSIRDCMARILKPRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSS 334 (591)
Q Consensus 258 ~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~yga 334 (591)
-.|..+..|.+...+.+. ..-+++ ++.+++||. ...++.+++.+ |++++ +.||+
T Consensus 184 --------------~~P~~~~~l~~~~~~~~~----~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~ 240 (436)
T 3qov_A 184 --------------AIPSYAIRLAEVFQEEGI----DPRETT---LKTLVIGAEPHTDEQRRKIERML-NVKAY-NSFGM 240 (436)
T ss_dssp --------------CCHHHHHHHHHHHHHTTC----CTTSSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEE
T ss_pred --------------ECHHHHHHHHHHHHHcCC----CcccCC---ccEEEEeCCcCCHHHHHHHHHHh-CccEE-ecCcc
Confidence 256666666555443311 111234 788888884 56778898888 89999 99999
Q ss_pred ccc-cccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceEEEEEccc----cceecc
Q 007728 335 SEC-FFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIITNY----TGVYRY 409 (591)
Q Consensus 335 SEg-~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt~----~GlyRY 409 (591)
||+ .+++.. .|+. ..++++......+|+++++.. ..|.+|+.|||+|++. ....||
T Consensus 241 TE~~~~~~~~--~~~~-~~g~~~~~~~~~v~i~d~~~g----------------~~~~~g~~Gel~v~~~~~~~~~~~~y 301 (436)
T 3qov_A 241 TEMNGPGVAF--ECQE-QNGMHFWEDCYLVEIIDPETG----------------EPVPEGEIGELVLTTLDREMMPLIRY 301 (436)
T ss_dssp GGGTEEEEEE--ECTT-CSSEEECTTTEEEEEECTTTC----------------SBCSTTCCEEEEEEESSCCSSCCCSE
T ss_pred hhhcCCeeEE--ecCC-CCeeEEccCceEEEEEECCCC----------------CCCCCCCceEEEEeccCcCCceEEEE
Confidence 997 332322 2332 445766656778888875533 2467899999999852 246789
Q ss_pred ccCCEEEEccccCC------CCeE-EEeeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCce
Q 007728 410 KVGDILRVAGFHNA------SPHF-HFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGH 482 (591)
Q Consensus 410 r~GDvV~v~gf~~~------~P~i-~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~~ 482 (591)
+|||+++++. +. .|+| .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+..+.......
T Consensus 302 ~TGDl~~~~~--~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~-~~~vv~~~~~~~~~~ 372 (436)
T 3qov_A 302 RTRDLTRILP--GKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELG-SNYLITLETVNNQDE 372 (436)
T ss_dssp EEEEEECEEC--SCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEE-EEEEEEEEEETTEEE
T ss_pred EcCCEEEEcC--CCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcC-CcEEEEEEcCCCCcE
Confidence 9999999985 33 4456 99999999999999999999999999752 2322 123332222112235
Q ss_pred eEEEEEEeecCCCCCCChHHHHHHHHHHHhhhCHHHHHhhhccCccCCeEEEEeCCccHHH
Q 007728 483 HVIYWEILVKDPANSPTDDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKTGTFEE 543 (591)
Q Consensus 483 Y~l~~E~~~~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~ 543 (591)
.+++++.. +. ...+....+.+.+.+.+.| .... -.|..|.+|+.+.|.+
T Consensus 373 l~a~v~~~--~~-~~~~~~~~~~l~~~l~~~l-------~~~~--~~p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 373 MIVEVELS--DL-STDNYIELEKIRRDIIRQL-------KDEI--LVTPKVKLVKKGSLPQ 421 (436)
T ss_dssp EEEEEEEC--TT-CCCCHHHHHHHHHHHHHHH-------HHHH--SSCCEEEEECTTCCC-
T ss_pred EEEEEEEc--Cc-cccchhhHHHHHHHHHHHH-------HHhc--CCceEEEEeCCCcccC
Confidence 56777775 21 1112223445555665565 2121 2456899999888774
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.92 E-value=3.4e-23 Score=224.23 Aligned_cols=385 Identities=15% Similarity=0.097 Sum_probs=225.7
Q ss_pred HHcHHHHHHHHHHHHHHhc-CCChhhhhc----CC--CCCCCHHHHhhcCCCcccccccHHHHHHhcCCCcccccccccc
Q 007728 30 TRNAATFQETVLAEILSRN-ANSEYLQRY----KL--GGATDRETFKLKLPVITYEDIKPDIQRMADGDRSAVLLASPIS 102 (591)
Q Consensus 30 ~~~~~~~Q~~~L~~iL~~~-~~t~ygr~~----gf--~~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~ 102 (591)
.++.++.|.+.|+++|++. ++++||+++ |+ .++.+++||+ ++|+++|++++... ..+. .-...+.+.
T Consensus 22 ~~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~---p~~~--~~~~~~~~~ 95 (443)
T 2y4o_A 22 RDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNY---PFGL--FAVPREQVV 95 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTT---TTTT--CSSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhC---CCcc--cCCChhheE
Confidence 4668899999999999985 899999975 44 4688999996 89999999986532 1111 112445566
Q ss_pred eeecccccCCCccccccCChHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEEecCCCccCCCCceecccCCcccCcchh
Q 007728 103 EFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPDLDKGKGLYFLFVRPETRTPGGLLVRPASNSMYKSDHF 182 (591)
Q Consensus 103 ~f~~TSGTT~G~~K~iP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~~ 182 (591)
++..||||| |+||.+++|...+..+....... + .. -++..++.+... .+.....+|+
T Consensus 96 ~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~---~-~~-~~~~~~d~~l~~--~~~~~~~~~~--------------- 152 (443)
T 2y4o_A 96 RVHASSGTT-GKPTVVGYTARDIDTWANVTARS---I-RA-AGGRPGDTLHNA--FGYGLFTGGL--------------- 152 (443)
T ss_dssp EEEEECCSS-SSCEEEEECHHHHHHHHHHHHHH---H-HH-TTCCTTCEEEEC--SCCSSSHHHH---------------
T ss_pred EEEECCCCC-CCceEEecCHHHHHHHHHHHHHH---H-HH-cCCCCCCEEEEe--ccCcccccHH---------------
Confidence 889999999 89999999998775543222111 1 01 123445544322 1100000000
Q ss_pred hcccccccCchhhhhcCChhhhHHHHHHhhcccccceeEEeecchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhh
Q 007728 183 KTRLHDYTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQIHWQALANDIETGTLNQKITDPSI 262 (591)
Q Consensus 183 ~~~~~~~~~P~ev~~~~d~~~~~Y~~ll~~L~~~~~~~~i~~~~~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~~~~~~~ 262 (591)
...+..+..|. .+..+....+ +++++.|++..+.. ..+
T Consensus 153 --------------------~~~~~~~~~G~----~~~~~~~~~~--------------~~~~~~i~~~~~t~----l~~ 190 (443)
T 2y4o_A 153 --------------------GIHYGAERLGC----MVVPMSGGQT--------------EKQVQLIRDFEPKI----ILV 190 (443)
T ss_dssp --------------------HHHHHHHHHTC----EEECCCSCCH--------------HHHHHHHHHHCCSE----EEE
T ss_pred --------------------HHHHHHHHcCC----EEEECCCCCH--------------HHHHHHHHHhCCcE----EEE
Confidence 01122223333 1222121111 23334444432222 111
Q ss_pred hhHHhhhcCCcHHHHHHHHHHhccccccccccccCCCCceeeEEEecCh---HHHHHHHHHHhCCCCeeccccccccc-c
Q 007728 263 RDCMARILKPRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSEC-F 338 (591)
Q Consensus 263 r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg-~ 338 (591)
.|..+..|.+...+.+. ..-+++ ++.+++||. ...++.+++.+ |++++ +.||+||+ .
T Consensus 191 ----------~Ps~~~~l~~~~~~~~~----~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~g 251 (443)
T 2y4o_A 191 ----------TPSYMLNLIDEMVRQGM----DPAESS---LKIGIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSEVMG 251 (443)
T ss_dssp ----------CHHHHHHHHHHHHHTTC----CGGGSS---CCEEEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETTTTE
T ss_pred ----------CHHHHHHHHHHHHHcCC----CcccCC---ceEEEECCCcCCHHHHHHHHHHh-CcCEE-eccCchhhcC
Confidence 56666665554433211 101345 677788774 56788888888 89998 99999995 3
Q ss_pred --ccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceEEEEEcccc----ceeccccC
Q 007728 339 --FGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIITNYT----GVYRYKVG 412 (591)
Q Consensus 339 --~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt~~----GlyRYr~G 412 (591)
+++ .|+....++++......+|++++++. ..|.+|+.|||+||+.. .+.||+||
T Consensus 252 ~~~~~----~~~~~~~g~~~~~~~~~~~i~d~~~g----------------~~~~~G~~Gel~v~~~t~~~~p~~~y~TG 311 (443)
T 2y4o_A 252 PGVAC----ECVETKDGPVIWEDHFYPEIIDPVTG----------------EVLPDGSQGELVFTSLTKEAMPVIRYRTR 311 (443)
T ss_dssp EEEEE----ECTTTCCSEEECTTTEEEEEECTTTC----------------CBCCTTCCEEEEEEESSCSSSCCSSEEEE
T ss_pred CeEEe----ccCCCCCceEEccCCeEEEEEcCCCC----------------CCCCCCCceEEEEeCCCcccChhheeecC
Confidence 333 23221225776556678899875532 14568999999998632 36789999
Q ss_pred CEEEEccc-cCCCCeE-EEeeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCceeEEEEEEe
Q 007728 413 DILRVAGF-HNASPHF-HFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGHHVIYWEIL 490 (591)
Q Consensus 413 DvV~v~gf-~~~~P~i-~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~~Y~l~~E~~ 490 (591)
|+++++.- -...|+| .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+...........++++++.
T Consensus 312 Dl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~~~a~v~~~ 384 (443)
T 2y4o_A 312 DLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLSRDGHMDRLDLAVELR 384 (443)
T ss_dssp EEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEEEETTEEEEEEEEEEC
T ss_pred CEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEecCCCCceEEEEEEEC
Confidence 99999851 1123567 89999999999999999999999999762 2432 12333222111123445667664
Q ss_pred ec-CCCCCCChHHHHHHHHHHHhhhCHHHHHhhhccCccCCeEEEEeCCccHH
Q 007728 491 VK-DPANSPTDDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKTGTFE 542 (591)
Q Consensus 491 ~~-~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~ 542 (591)
.. +. .......+.+.+.+.+.| .... --|.+|.+++.+.|.
T Consensus 385 ~~~~~--~~~~~~~~~l~~~l~~~l-------~~~~--~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 385 SEAAA--SVTDGERAALARELQHRI-------KTMV--GVSSGVTVLAAGGIP 426 (443)
T ss_dssp HHHHT--TCCHHHHHHHHHHHHHHH-------HHHT--CCCCEEEEECTTCSC
T ss_pred Ccccc--cchhhHHHHHHHHHHHHH-------HHHh--CCceEEEEeCCCccc
Confidence 10 00 011223344455555555 2111 135578888877766
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.91 E-value=2.1e-23 Score=225.45 Aligned_cols=384 Identities=16% Similarity=0.144 Sum_probs=225.1
Q ss_pred HHcHHHHHHHHHHHHHHhc-CCChhhhhc----CC--CCCCCHHHHhhcCCCcccccccHHHHHHhcCCCcccccccccc
Q 007728 30 TRNAATFQETVLAEILSRN-ANSEYLQRY----KL--GGATDRETFKLKLPVITYEDIKPDIQRMADGDRSAVLLASPIS 102 (591)
Q Consensus 30 ~~~~~~~Q~~~L~~iL~~~-~~t~ygr~~----gf--~~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~ 102 (591)
.++.++.|.+.|+.+|++. .+++||+++ |+ .++.+++||+ ++|+++|++++... ..+- .-...+.+.
T Consensus 20 ~~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~---~~~~--~~~~~~~~~ 93 (437)
T 2y27_A 20 RDELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSY---PFGM--FAVPQDRIS 93 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTT---TTTT--CSSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcC---CCcc--ccCChhHeE
Confidence 4668899999999999985 899999975 44 4588999996 89999999986432 1111 112345566
Q ss_pred eeecccccCCCccccccCChHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEEecCCCccCCCCceecccCCcccCcchh
Q 007728 103 EFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPDLDKGKGLYFLFVRPETRTPGGLLVRPASNSMYKSDHF 182 (591)
Q Consensus 103 ~f~~TSGTT~G~~K~iP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~~ 182 (591)
++..||||| |+||.+++|+..+..+....... + .. .++..++.+... .+.....+|+
T Consensus 94 ~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~---~-~~-~~~~~~d~~~~~--~~~~~~~~~~--------------- 150 (437)
T 2y27_A 94 RIHASSGTT-GKPTVVGYTAADIDTWANLVARS---I-RA-AGARRGDKVHVS--YGYGLFTGGL--------------- 150 (437)
T ss_dssp EEEECCCTT-SSCCEEEECHHHHHHHHHHHHHH---H-HH-TTCCTTCEEEEC--SCCSSSHHHH---------------
T ss_pred EEEECCCCC-CCceEEecCHHHHHHHHHHHHHH---H-HH-cCCCCCCEEEEc--ccccccccch---------------
Confidence 889999999 89999999998775543222111 1 01 123445544322 1100000000
Q ss_pred hcccccccCchhhhhcCChhhhHHHHHHhhcccccceeEEeecchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhh
Q 007728 183 KTRLHDYTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALFASGLLRAMRFLQIHWQALANDIETGTLNQKITDPSI 262 (591)
Q Consensus 183 ~~~~~~~~~P~ev~~~~d~~~~~Y~~ll~~L~~~~~~~~i~~~~~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~~~~~~~ 262 (591)
...+..++.|. .+..+.... .+.+++.|++..+.. ..+
T Consensus 151 --------------------~~~~~~~~~G~----~~~~~~~~~--------------~~~~~~~i~~~~~t~----l~~ 188 (437)
T 2y27_A 151 --------------------GAHYGAERAGL----TVIPFGGGQ--------------TEKQVQLIQDFRPDI----IMV 188 (437)
T ss_dssp --------------------HHHHHHHHTTC----EEECCCSCC--------------HHHHHHHHHHHCCSE----EEE
T ss_pred --------------------HHHHHHHHcCC----EEEeCCCCC--------------HHHHHHHHHHhCCCE----EEE
Confidence 00122222332 122111111 223344444443222 111
Q ss_pred hhHHhhhcCCcHHHHHHHHHHhccccccccccccCCCCceeeEEEecCh---HHHHHHHHHHhCCCCeeccccccccc-c
Q 007728 263 RDCMARILKPRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSEC-F 338 (591)
Q Consensus 263 r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg-~ 338 (591)
.|..+..|.+...+.+. ..-+++ ++.+++||. ...++.+++.+ |++++ +.||+||+ .
T Consensus 189 ----------~Ps~~~~l~~~~~~~~~----~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~g 249 (437)
T 2y27_A 189 ----------TPSYMLSIADEIERQGL----DPVQSS---LRIGIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLSEVMG 249 (437)
T ss_dssp ----------CHHHHHHHHHHHHHTTC----CGGGSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEETTTTE
T ss_pred ----------CHHHHHHHHHHHHHcCC----CcccCC---eeEEEEcCccCCHHHHHHHHHHH-CcCEE-ecCCchhhcC
Confidence 56666665554433211 101345 677778774 56788888888 89998 99999995 3
Q ss_pred --ccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceEEEEEcccc----ceeccccC
Q 007728 339 --FGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIITNYT----GVYRYKVG 412 (591)
Q Consensus 339 --~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt~~----GlyRYr~G 412 (591)
+++ .|+....++++..+..++|++++++. .+|.+|+.|||+||+.. .+.||+||
T Consensus 250 ~~~~~----~~~~~~~g~~~~~~~~~~~i~d~~~g----------------~~~~~g~~Gel~v~~~t~~~~~~~~y~TG 309 (437)
T 2y27_A 250 PGVAS----ECVETKDGPTIWEDHFYPEIIDPETG----------------EVLPDGELGELVFTSLTKEALPIIRYRTR 309 (437)
T ss_dssp EEEEE----CCTTTCSSCEECTTTEEEEEECTTTC----------------CBCCTTCCEEEEEEESSCSSSCCCSEEEE
T ss_pred CeeEE----ecCCCCCceeEccCceEEEEEcCCCC----------------CCCCCCCccEEEEecCCcCCchhheeecC
Confidence 333 23321225666556778999875532 24568999999998633 26799999
Q ss_pred CEEEEccc-cCCCCeE-EEeeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCceeEEEEEEe
Q 007728 413 DILRVAGF-HNASPHF-HFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGHHVIYWEIL 490 (591)
Q Consensus 413 DvV~v~gf-~~~~P~i-~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~~Y~l~~E~~ 490 (591)
|+++++.. -...|+| .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+..+........+++++..
T Consensus 310 Dl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~l~a~v~~~ 382 (437)
T 2y27_A 310 DLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ------RALA-PHYQIVLTKEGPLDVLTLNVEPC 382 (437)
T ss_dssp EEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC------TTBC-SCCEEEEEEETTEEEEEEEECBC
T ss_pred CEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC------cCcC-ccEEEEEeecCCCceEEEEEEEC
Confidence 99999752 1246777 89999999999999999999999999763 2321 12322221111123445666653
Q ss_pred ecCCCCCCChHHHHHHHHHHHhhhCHHHHHhhhccCccCCeEEEEeCCccHH
Q 007728 491 VKDPANSPTDDVLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKTGTFE 542 (591)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~ 542 (591)
+. ........+.+.+.+.+.| .... --|..|.+++.+.|.
T Consensus 383 --~~-~~~~~~~~~~l~~~l~~~l-------~~~~--~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 383 --PE-TAPDTAAIQVAKQALAYDI-------KSLI--GVTAVINVLPVNGIE 422 (437)
T ss_dssp --TT-TTTCHHHHHHHHHHHHHHH-------HHHH--CCCEEEEECCTTCSC
T ss_pred --CC-ccchhhhHHHHHHHHHHHH-------HHhc--CCceEEEEeCCCCcc
Confidence 21 0111123344445554454 2111 135578888877765
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.69 E-value=2.7e-16 Score=165.87 Aligned_cols=309 Identities=9% Similarity=0.043 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHhc-C---CChhhhhc----CC---CCCCCHHHHhhcCCCcccccccH-HHHHHhcCCCcccccccccc
Q 007728 35 TFQETVLAEILSRN-A---NSEYLQRY----KL---GGATDRETFKLKLPVITYEDIKP-DIQRMADGDRSAVLLASPIS 102 (591)
Q Consensus 35 ~~Q~~~L~~iL~~~-~---~t~ygr~~----gf---~~i~s~edf~~~vPl~~Yed~~p-~ier~~~Ge~~~ll~~~pi~ 102 (591)
..+++.|++++++. . +++|||++ |+ .+|++++|++ ++|+++ ++++. ..+.+.. .. +..+.+.
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a 94 (369)
T 3hgu_A 21 NDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHP 94 (369)
T ss_dssp TCHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCC
T ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccE
Confidence 35788899999985 7 99999964 55 3688999995 899999 99875 3322211 01 2456667
Q ss_pred eeecccccCCCccccccCChHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEEecCCCccCCCCceecccCCcccCcchh
Q 007728 103 EFLKSSGTSSGEQKLFPSTQEELDRRHFQISLLRAVMNRCVPDLDKGKGLYFLFVRPETRTPGGLLVRPASNSMYKSDHF 182 (591)
Q Consensus 103 ~f~~TSGTT~G~~K~iP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~~ 182 (591)
++..||||| |+||-+.+|+..+........ .. -...++..++.+..+ .+......|+
T Consensus 95 ~i~~TSGTT-G~PKgv~~t~~~~~~~~~~~~----~~-~~~~~~~~~d~~l~~--~p~g~~~~g~--------------- 151 (369)
T 3hgu_A 95 QVYESGGTT-GAPKYVVAYDAWIEALISWRM----SG-YQHRPGRPSGNTLAA--IPTGPHIVGA--------------- 151 (369)
T ss_dssp EEEEECC----CCEEEEECHHHHHHHHHHHT----TT-TTTSTTCCCCEEEEC--SCCTTCHHHH---------------
T ss_pred EEEECCCCC-CCCCEEEECHHHHHHHHHHHH----hh-HHhhCCCCcceEEEe--cCCCchhhhH---------------
Confidence 899999999 899999999987654322110 00 012233445443322 1100000111
Q ss_pred hcccccccCchhhhhcCChhhhHHHHHHhhcccccceeEEeecc-hH---HH------HHHHHHHHHHHHHHHHHHHhcc
Q 007728 183 KTRLHDYTSPIEAILCADSFQSMYTHMLCGLLEREQVLRLGALF-AS---GL------LRAMRFLQIHWQALANDIETGT 252 (591)
Q Consensus 183 ~~~~~~~~~P~ev~~~~d~~~~~Y~~ll~~L~~~~~~~~i~~~~-~~---~l------l~~~~~l~~~w~~l~~dI~~g~ 252 (591)
...+..++.|. + .+...+ +. .+ ...-...+...+++++.|++..
T Consensus 152 --------------------~~~~~~~~~G~-----~-v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 205 (369)
T 3hgu_A 152 --------------------INKERALRLGG-----M-FFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQD 205 (369)
T ss_dssp --------------------HHHHHHHHTTS-----C-EECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred --------------------HHHHHHHHcCC-----E-EECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCC
Confidence 00011111221 0 111111 11 00 0111123334455666777764
Q ss_pred CCCCCCChhhhhHHhhhcCCcHHHHHHHHHHhccccccccccccCCCCceeeEEEecCh---HHHHHHHH-HHhCCCCee
Q 007728 253 LNQKITDPSIRDCMARILKPRPELAELIRMECSEENWEGIIARIWPNTKYLDAVATGSM---AQYIHLLD-YYSGSLPIA 328 (591)
Q Consensus 253 ~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~-~~~~g~~v~ 328 (591)
+..-+. .|..+..|.+.... .....++ ++.+++||. ...+++++ +.||+++++
T Consensus 206 ~t~l~~--------------~Ps~~~~l~~~~~~------~~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~ 262 (369)
T 3hgu_A 206 IRFLVT--------------TPPVLRELLKRPEV------VLQMKQS---LAQITLGGTELNLDEIKFIASEILPDCEFS 262 (369)
T ss_dssp EEEEEE--------------CHHHHHHHTTCHHH------HHHHHHH---CSEEEEESSCCCHHHHHHHHHHTCTTSEEE
T ss_pred CCEEEe--------------CHHHHHHHHhhhhh------hccccCC---eeEEEECCccCCHHHHHHHHHHhCCCcEEE
Confidence 443222 34444443221110 0011223 677888874 56778888 888899999
Q ss_pred ccccccccccccccCCCCCCCCCCceeec----CCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceEEEEEcccc
Q 007728 329 SMLYSSSECFFGLNLNPMCKTSEASYTIM----PNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIITNYT 404 (591)
Q Consensus 329 ~~~ygaSEg~~~i~~~~~~~~~~~~~~l~----~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt~~ 404 (591)
+.||+||+.... ..|+....+.++. .....++++++++. ..|.+|+.|||+||+..
T Consensus 263 -~~YG~TE~~~~~---~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g----------------~~vp~G~~GEl~vt~l~ 322 (369)
T 3hgu_A 263 -ASYGSTSALGVS---RSLLITSESQQVIYDSFSPFITYDVVDSITA----------------QTVEYGERGNVIVTHLS 322 (369)
T ss_dssp -EEEEEGGGTEEE---EECCBCTTCSSCEEECCTTTEEEEEECTTTC----------------SBCCTTCEEEEEEEEEE
T ss_pred -cccCchhhhcce---eccccccCCCcccccCCCCCeEEEEECCCCC----------------cCCCCCCceEEEEEEcC
Confidence 999999974322 2333211333321 23356777765332 24678999999999732
Q ss_pred ---ceeccccCCEEEEccccCCCC-----eEEEeeecCceecccc
Q 007728 405 ---GVYRYKVGDILRVAGFHNASP-----HFHFVRRKDALLSIDY 441 (591)
Q Consensus 405 ---GlyRYr~GDvV~v~gf~~~~P-----~i~f~gR~~~~l~~~G 441 (591)
-+.||+|||+++.......-+ -+..++|.++...+.|
T Consensus 323 ~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 323 PWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp TTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred cccccccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 299999999998764322111 3456666655555544
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.65 E-value=1.5e-14 Score=162.16 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=92.7
Q ss_pred eeeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCC--CCCCceeecCCCeEEEEEECCCCCCCCC
Q 007728 302 YLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCK--TSEASYTIMPNMAYFEFLLHDPGSPAST 376 (591)
Q Consensus 302 ~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~--~~~~~~~l~~~~~~~EFip~~~~~~~~~ 376 (591)
.++.+++||. ...++++++.+ |++++ +.||+||+.+.+...+... +...+. ..| +.-+++++++ +
T Consensus 342 ~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~-~~~v~ivd~~--g---- 411 (580)
T 3etc_A 342 TLKYAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTP-GYKIELMDRD--G---- 411 (580)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECT-TCEEEEECTT--S----
T ss_pred cceEEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCcccc-CCC-CCEEEEECCC--C----
Confidence 3788888884 45667787888 89999 9999999854332222111 111222 123 3345555533 1
Q ss_pred CCCCCCccccccccCCCceEEEEEcc--------ccceec-------------cccCCEEEEccccCCCCeEEEeeecCc
Q 007728 377 SDFQPPKLVDLVDVEVGKEYEPIITN--------YTGVYR-------------YKVGDILRVAGFHNASPHFHFVRRKDA 435 (591)
Q Consensus 377 ~~~~~~~~~~~~ev~~G~~yelvvTt--------~~GlyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~ 435 (591)
.++.+|+.|||+|++ ..|+|+ |+|||+++++ ....+.|+||.+|
T Consensus 412 -----------~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d----~dG~l~~~GR~dd 476 (580)
T 3etc_A 412 -----------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMD----EDGYLWFVGRADD 476 (580)
T ss_dssp -----------CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEEC----TTSCEEEEEESSS
T ss_pred -----------CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEEC----CCCcEEEEecCCC
Confidence 256789999999975 245664 9999999996 3678999999999
Q ss_pred eecccccccCHHHHHHHHHH
Q 007728 436 LLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 436 ~l~~~Geki~e~~v~~av~~ 455 (591)
+|++.|++|.+.+||++|.+
T Consensus 477 ~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 477 IIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp CEEETTEEECHHHHHHHHTT
T ss_pred EEEECCEEECHHHHHHHHHh
Confidence 99999999999999999976
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.61 E-value=7.6e-14 Score=155.13 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=93.3
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCC--CCCCceeecCCCeEEEEEECCCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCK--TSEASYTIMPNMAYFEFLLHDPGSPASTS 377 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~--~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 377 (591)
++.+++||. ...++++++.+++++++ +.||+||+...+...+... +...+. ..| ..-.+++++++.
T Consensus 311 lr~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~~~------ 381 (548)
T 2d1s_A 311 LVEIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGK-VVP-LFKAKVIDLDTK------ 381 (548)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBE-ECT-TCEEEEECTTTC------
T ss_pred eeEEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCc-cCC-CceEEEEeCCcC------
Confidence 778888884 46678888888888898 9999999743222112111 111222 223 234566653322
Q ss_pred CCCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeecCceeccc
Q 007728 378 DFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRKDALLSID 440 (591)
Q Consensus 378 ~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~ 440 (591)
.+|.+|+.|||+|+. ..|||. |+|||+++++ ....+.|+||.+|+|+++
T Consensus 382 ----------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~~d~ik~~ 447 (548)
T 2d1s_A 382 ----------KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD----EEKHFFIVDRLKSLIKYK 447 (548)
T ss_dssp ----------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTCCEEEEEEGGGCBCBT
T ss_pred ----------ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEc----CCCeEEEeccccceEEEC
Confidence 245789999999975 456653 9999999996 356899999999999999
Q ss_pred ccccCHHHHHHHHHH
Q 007728 441 YDKTDEADLQKAVEN 455 (591)
Q Consensus 441 Geki~e~~v~~av~~ 455 (591)
|++|++.+||++|.+
T Consensus 448 G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 448 GYQVPPAELESVLLQ 462 (548)
T ss_dssp TCCBCHHHHHHHHHT
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999999975
No 10
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.60 E-value=2.8e-14 Score=158.05 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=93.6
Q ss_pred eeeEEEecCh---HHHHHHHHHHhCCCCeecccccccccccc--ccC----CCC-CCCCCCceeecCCCeEEEEEECCCC
Q 007728 302 YLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFG--LNL----NPM-CKTSEASYTIMPNMAYFEFLLHDPG 371 (591)
Q Consensus 302 ~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~--i~~----~~~-~~~~~~~~~l~~~~~~~EFip~~~~ 371 (591)
.++.+++||. ....+.+++.+++++++ +.||+||+... .+. .+. ..+...+. ..+ +.-.++++++..
T Consensus 298 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~~~ 374 (536)
T 3ni2_A 298 SLRMIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVR-NAEMKIVDPETG 374 (536)
T ss_dssp TCCEEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECS-SCEEEEECTTTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCC-CcEEEEEeCCCC
Confidence 3788888884 46678888888899999 99999997432 111 000 01111122 122 234556654322
Q ss_pred CCCCCCCCCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeecC
Q 007728 372 SPASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRKD 434 (591)
Q Consensus 372 ~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~ 434 (591)
.+|.+|+.|||+|+. ..|||+ |||||+++++ ....+.|+||.+
T Consensus 375 ----------------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~----~dG~l~~~GR~d 434 (536)
T 3ni2_A 375 ----------------ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID----DDDELFIVDRLK 434 (536)
T ss_dssp ----------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEEEEECS
T ss_pred ----------------cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEc----CCceEEEEeccc
Confidence 245789999999974 567763 9999999996 367899999999
Q ss_pred ceecccccccCHHHHHHHHHH
Q 007728 435 ALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 435 ~~l~~~Geki~e~~v~~av~~ 455 (591)
|+|+++|++|.+.+||++|.+
T Consensus 435 d~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 435 ELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp CCEEETTEEECHHHHHHHHHT
T ss_pred ceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999875
No 11
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.59 E-value=7.7e-14 Score=153.52 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=92.0
Q ss_pred cCCCCceeeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCC-------CCCCCCCceeecCCCeEEEE
Q 007728 296 IWPNTKYLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNP-------MCKTSEASYTIMPNMAYFEF 365 (591)
Q Consensus 296 lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~-------~~~~~~~~~~l~~~~~~~EF 365 (591)
..+. ++.+++||. ....+++++.+++++++ +.||+||+.+.+.... .+.....+. ..|+ .-+++
T Consensus 258 ~~~~---l~~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i 331 (511)
T 3e7w_A 258 LLPH---ADTFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPD-MNIFI 331 (511)
T ss_dssp TCTT---CCEEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTT-CEEEE
T ss_pred cCCc---ccEEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcc-eeCC-CEEEE
Confidence 4455 677777774 46678888888899999 9999999743221100 000001122 1232 33455
Q ss_pred EECCCCCCCCCCCCCCCccccccccCCCceEEEEEcc---cccee-----------------ccccCCEEEEccccCCCC
Q 007728 366 LLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVY-----------------RYKVGDILRVAGFHNASP 425 (591)
Q Consensus 366 ip~~~~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~Gly-----------------RYr~GDvV~v~gf~~~~P 425 (591)
++.+ + .+|.+|+.|||+|+. ..||| .|+|||++++. ..
T Consensus 332 ~d~~--g---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-----dG 389 (511)
T 3e7w_A 332 MDEE--G---------------QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-----DG 389 (511)
T ss_dssp ECTT--S---------------CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-----TT
T ss_pred ECCC--C---------------CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-----CC
Confidence 5432 1 256789999999974 44555 49999999883 46
Q ss_pred eEEEeeecCceecccccccCHHHHHHHHHH
Q 007728 426 HFHFVRRKDALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 426 ~i~f~gR~~~~l~~~Geki~e~~v~~av~~ 455 (591)
.+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 390 ~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 390 QIFCQGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp EEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred eEEEEccccCEEEECCEEeCHHHHHHHHHh
Confidence 899999999999999999999999999976
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.59 E-value=3.4e-14 Score=156.31 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=90.0
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCC-------CCCCCceeecCCCeEEEEEECCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMC-------KTSEASYTIMPNMAYFEFLLHDPGS 372 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~-------~~~~~~~~l~~~~~~~EFip~~~~~ 372 (591)
++.+++||. ....+++.+.+++++++ +.||+||+.+.+...... .....+. ..+ ..-..+++.+ +
T Consensus 263 lr~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~--g 337 (512)
T 3fce_A 263 MKTFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKS-DCRLLIMKED--G 337 (512)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECT-TCEEEEECSS--S
T ss_pred ccEEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccc-ccC-CcEEEEECCC--C
Confidence 677788774 46678888888899999 999999974422110100 0001112 112 2234444422 1
Q ss_pred CCCCCCCCCCccccccccCCCceEEEEEcc---ccceec-----------------cccCCEEEEccccCCCCeEEEeee
Q 007728 373 PASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR-----------------YKVGDILRVAGFHNASPHFHFVRR 432 (591)
Q Consensus 373 ~~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR-----------------Yr~GDvV~v~gf~~~~P~i~f~gR 432 (591)
.++.+|+.|||+|+. ..|||. |+|||++++. ...+.|+||
T Consensus 338 ---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~-----dG~l~i~GR 397 (512)
T 3fce_A 338 ---------------TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-----NGLLFYNGR 397 (512)
T ss_dssp ---------------CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEE-----TTEEEEEEE
T ss_pred ---------------CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEec-----CCEEEEecc
Confidence 245789999999974 567763 9999999883 468999999
Q ss_pred cCceecccccccCHHHHHHHHHH
Q 007728 433 KDALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 433 ~~~~l~~~Geki~e~~v~~av~~ 455 (591)
.+|+|+++|++|++.+||++|.+
T Consensus 398 ~~d~ik~~G~~v~p~eIE~~l~~ 420 (512)
T 3fce_A 398 LDFQIKLHGYRMELEEIEHHLRA 420 (512)
T ss_dssp GGGCEEETTEEECHHHHHHHHHH
T ss_pred cCCEEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999976
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.58 E-value=3.3e-14 Score=156.36 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=92.5
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDF 379 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~ 379 (591)
++.+++||. ....+.+++.+ |++++ +.||+||+.+...............-....+.-.++++++..
T Consensus 270 lr~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g-------- 339 (503)
T 4fuq_A 270 MRLFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETG-------- 339 (503)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTC--------
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCC--------
Confidence 688888884 45667777888 78998 999999985432211111100111111112334555553322
Q ss_pred CCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeecCceeccccc
Q 007728 380 QPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRKDALLSIDYD 442 (591)
Q Consensus 380 ~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~Ge 442 (591)
.+|.+|+.|||+|+. ..|||+ |||||+++++ ....+.|+||.+|+++++|+
T Consensus 340 --------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~dd~ik~~G~ 407 (503)
T 4fuq_A 340 --------KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID----ERGYVHILGRGKDLVITGGF 407 (503)
T ss_dssp --------CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC----TTCEEEECCSSTTCEEETTE
T ss_pred --------CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc----CCCcEEEEecCCCEEEECCE
Confidence 256789999999974 567774 9999999996 46799999999999999999
Q ss_pred ccCHHHHHHHHHH
Q 007728 443 KTDEADLQKAVEN 455 (591)
Q Consensus 443 ki~e~~v~~av~~ 455 (591)
+|.+.+||++|.+
T Consensus 408 ~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 408 NVYPKEIESEIDA 420 (503)
T ss_dssp EECHHHHHHHHHT
T ss_pred EECHHHHHHHHHh
Confidence 9999999999975
No 14
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.57 E-value=2.8e-13 Score=153.86 Aligned_cols=231 Identities=13% Similarity=0.105 Sum_probs=126.8
Q ss_pred CceeeEEEecCh---HHHHHHHHHHhC--CCCeeccccccccccccccCC-CCC---CCCCCceeecCCCeEEEEEECCC
Q 007728 300 TKYLDAVATGSM---AQYIHLLDYYSG--SLPIASMLYSSSECFFGLNLN-PMC---KTSEASYTIMPNMAYFEFLLHDP 370 (591)
Q Consensus 300 l~~l~~~~~g~~---~~y~~~l~~~~~--g~~v~~~~ygaSEg~~~i~~~-~~~---~~~~~~~~l~~~~~~~EFip~~~ 370 (591)
++.++.+++||. ....+.+.+.+| +++++ +.||.||+...+... +.. .+...+. ..++. -..+++.+
T Consensus 377 l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~-p~~g~-~v~i~d~~- 452 (652)
T 1pg4_A 377 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFGV-QPALVDNE- 452 (652)
T ss_dssp CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTC-CEEEECTT-
T ss_pred cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCcccc-CcCCC-eEEEECCC-
Confidence 344788888884 455677777774 28999 999999974322111 110 0111111 11222 23444422
Q ss_pred CCCCCCCCCCCCccccccccCCCceEEEEEcc-----ccceec----------------cccCCEEEEccccCCCCeEEE
Q 007728 371 GSPASTSDFQPPKLVDLVDVEVGKEYEPIITN-----YTGVYR----------------YKVGDILRVAGFHNASPHFHF 429 (591)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt-----~~GlyR----------------Yr~GDvV~v~gf~~~~P~i~f 429 (591)
+ .+|..|+.|||+|+. ..|+|+ |+|||+++++ ....+.|
T Consensus 453 -g---------------~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d----~dG~l~i 512 (652)
T 1pg4_A 453 -G---------------HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD----EDGYYWI 512 (652)
T ss_dssp -C---------------CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC----TTSCEEE
T ss_pred -C---------------CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEc----CCCcEEE
Confidence 1 245679999999975 234442 9999999996 3578999
Q ss_pred eeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCc-eeEEEEEEeecCCCCCCChHHHHHHHH
Q 007728 430 VRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPG-HHVIYWEILVKDPANSPTDDVLKQCCL 508 (591)
Q Consensus 430 ~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~-~Y~l~~E~~~~~~~~~~~~~~~~~~~~ 508 (591)
+||.+|+|+++|++|...+||++|.+. .+ |.+..++.-.....+ .-+.|+.+.. +. ..+++..+++.+
T Consensus 513 ~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~l~a~Vv~~~-~~--~~~~~~~~~l~~ 581 (652)
T 1pg4_A 513 TGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAIKGQAIYAYVTLNH-GE--EPSPELYAEVRN 581 (652)
T ss_dssp EEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETTTEEEEEEEEEECT-TC--CCCHHHHHHHHH
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcCCCCeEEEEEEEECC-CC--CCCHHHHHHHHH
Confidence 999999999999999999999999752 23 345544331111112 3345666642 21 223333334444
Q ss_pred HHHhhhCHHHHHhhhccCccCCeEEEEeC------CccHHH--HHHHHHhcCCCCCCCccccccCCHhHHHHHhhcch
Q 007728 509 AMEESLDSAYREARVVDKTIGPLEIRLVK------TGTFEE--LMDYAISRGASINQYKVARCVGSTSILKLLDSRVI 578 (591)
Q Consensus 509 ~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~------~gtf~~--~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~ 578 (591)
.+.+.| +. ...|-++.+|+ .|-..+ +++. ..+. ..+++.+--+.|++.++.+.+.+.
T Consensus 582 ~l~~~l-~~---------~~~P~~i~~v~~lP~T~sGKi~R~~L~~~--~~~~-~~~~~~~~~l~~p~~~~~~~~~~~ 646 (652)
T 1pg4_A 582 WVRKEI-GP---------LATPDVLHWTDSLPKTRSGKIMRRILRKI--AAGD-TSNLGDTSTLADPGVVEKLLEEKQ 646 (652)
T ss_dssp HHHHHT-CG---------GGCCSEEEECSCCCBCTTSCBCHHHHHHH--HHTC-----------CCTTHHHHHHHHHH
T ss_pred HHHHhC-CC---------CcCCeEEEEcCCCCCCCCccchHHHHHHH--HhCC-CCCCCCccccCCHHHHHHHHHHhh
Confidence 444333 11 13455566554 233222 2221 1232 135666677889999998876443
No 15
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.57 E-value=2.1e-14 Score=159.62 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=69.0
Q ss_pred eeeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCC
Q 007728 302 YLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSD 378 (591)
Q Consensus 302 ~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~ 378 (591)
.++.+++||. ....+++++.++...++ +.||+||+...+...+.........-......-.+++++++.
T Consensus 308 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~------- 379 (550)
T 3rix_A 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG------- 379 (550)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTC-------
T ss_pred cccEEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCC-------
Confidence 3788888884 46678888888433477 999999985433222221111111111112334566654432
Q ss_pred CCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeecCceecccc
Q 007728 379 FQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRKDALLSIDY 441 (591)
Q Consensus 379 ~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~G 441 (591)
.++.+|+.|||+|+. ..|||. |+|||+++++ ....+.|+||.+|+|+++|
T Consensus 380 ---------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~----~dG~l~~~GR~dd~ik~~G 446 (550)
T 3rix_A 380 ---------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD----EDEHFFIVDRLKSLIKYKG 446 (550)
T ss_dssp ---------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTCCEEEC-----------
T ss_pred ---------cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe----CCceEEEEecchheeEECC
Confidence 245789999999974 566763 9999999996 4678999999999999999
Q ss_pred cccCHHHHHHHHHHH
Q 007728 442 DKTDEADLQKAVENA 456 (591)
Q Consensus 442 eki~e~~v~~av~~a 456 (591)
++|.+.+||++|.+.
T Consensus 447 ~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 447 YQVAPAELESILLQH 461 (550)
T ss_dssp ---------------
T ss_pred EEECHHHHHHHHHhC
Confidence 999999999999873
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.56 E-value=1.2e-13 Score=151.65 Aligned_cols=130 Identities=13% Similarity=0.184 Sum_probs=91.2
Q ss_pred eeeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCCCCCceeecC-CCeEEEEEECCCCCCCCCC
Q 007728 302 YLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMP-NMAYFEFLLHDPGSPASTS 377 (591)
Q Consensus 302 ~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~-~~~~~EFip~~~~~~~~~~ 377 (591)
.++.+++||. ...++++++.+ +++++ +.||+||+.+.+.. +.. ..+..-.| ...-..+++.+...
T Consensus 273 ~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~-~~~---~~~~~g~p~~~~~~~i~~~~~~~----- 341 (504)
T 1t5h_X 273 SLRHVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYM-RQP---KTGTEMAPGFFSEVRIVRIGGGV----- 341 (504)
T ss_dssp TCCEEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEE-ESC---SSSSEEBCCTTCCEEEECTTSCT-----
T ss_pred cccEEEEcCCcCCHHHHHHHHHhc-Cccee-eeeccccccccccc-cCC---CCCccccCCCCCceeEEeccCCC-----
Confidence 3788888885 46677888888 68888 99999998433321 111 11111112 11223344432210
Q ss_pred CCCCCccccccccCCCceEEEEEc-c---ccceec-------------cccCCEEEEccccCCCCeEEEeeecCceeccc
Q 007728 378 DFQPPKLVDLVDVEVGKEYEPIIT-N---YTGVYR-------------YKVGDILRVAGFHNASPHFHFVRRKDALLSID 440 (591)
Q Consensus 378 ~~~~~~~~~~~ev~~G~~yelvvT-t---~~GlyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~ 440 (591)
...|.+|+.|||+|+ . ..|||+ |+|||+++++. ...+.|+||.+|+|+++
T Consensus 342 ---------~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ik~~ 408 (504)
T 1t5h_X 342 ---------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRVDDMIISG 408 (504)
T ss_dssp ---------TCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCEEET
T ss_pred ---------CCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcccCEEEEC
Confidence 124678999999998 3 468886 99999999963 56899999999999999
Q ss_pred ccccCHHHHHHHHHH
Q 007728 441 YDKTDEADLQKAVEN 455 (591)
Q Consensus 441 Geki~e~~v~~av~~ 455 (591)
|++|.+.+||++|.+
T Consensus 409 G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 409 GENIHPSEIERVLGT 423 (504)
T ss_dssp TEEECHHHHHHHHTT
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999999965
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.55 E-value=1.4e-13 Score=152.00 Aligned_cols=128 Identities=11% Similarity=0.046 Sum_probs=88.9
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccc-cccccCCC-CCCCCCCceeecCCCeEEEEEECCCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSEC-FFGLNLNP-MCKTSEASYTIMPNMAYFEFLLHDPGSPASTS 377 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg-~~~i~~~~-~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 377 (591)
++.+++||. ...++++++.+ |++++ +.||+||+ .+.+...+ .+.....+. ..+ +.-+++++.+ +
T Consensus 302 lr~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~-~~~~~i~d~~--g----- 370 (529)
T 2v7b_A 302 IRICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVP-GYEIELRDEA--G----- 370 (529)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECT-TCEEEEECTT--S-----
T ss_pred eEEEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCC-CCEEEEECCC--C-----
Confidence 788888884 46678888888 89999 99999997 33322111 111111222 122 3345666532 1
Q ss_pred CCCCCccccccccCCCceEEEEEcc---ccceec-------------cccCCEEEEccccCCCCeEEEeeecCceecccc
Q 007728 378 DFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR-------------YKVGDILRVAGFHNASPHFHFVRRKDALLSIDY 441 (591)
Q Consensus 378 ~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~G 441 (591)
.+|.+|+.|||+|+. ..|||+ |+|||+++++. ...+.|+||.+|+|+++|
T Consensus 371 ----------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G 436 (529)
T 2v7b_A 371 ----------HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDMLKVSG 436 (529)
T ss_dssp ----------CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCBC---
T ss_pred ----------CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeEEECC
Confidence 246789999999975 567875 89999999963 678999999999999999
Q ss_pred cccCHHHHHHHHHH
Q 007728 442 DKTDEADLQKAVEN 455 (591)
Q Consensus 442 eki~e~~v~~av~~ 455 (591)
++|++.+||++|.+
T Consensus 437 ~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 437 QYVSPVEVEMVLVQ 450 (529)
T ss_dssp -CBCHHHHHHHHTT
T ss_pred EEECHHHHHHHHHh
Confidence 99999999999975
No 18
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.54 E-value=9.6e-14 Score=155.05 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=54.2
Q ss_pred ccCCCceEEEEEcc---cccee----------------------ccccCCEEEEccccCCCCeEEEeeecCceecccccc
Q 007728 389 DVEVGKEYEPIITN---YTGVY----------------------RYKVGDILRVAGFHNASPHFHFVRRKDALLSIDYDK 443 (591)
Q Consensus 389 ev~~G~~yelvvTt---~~Gly----------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~Gek 443 (591)
++.+|+.|||+|+. ..||| .|||||+++++ ...+.|+||.+|+|+++|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----dG~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----ENELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----TTEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----CCEEEEEcCccceEEECCEe
Confidence 56789999999975 45665 59999999885 35799999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 007728 444 TDEADLQKAVENA 456 (591)
Q Consensus 444 i~e~~v~~av~~a 456 (591)
|++.+||.+|...
T Consensus 468 v~p~eIE~~l~~~ 480 (590)
T 3kxw_A 468 HYPQDIEFSLMHS 480 (590)
T ss_dssp THHHHHHHHHHHS
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999553
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.54 E-value=1.4e-14 Score=159.32 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=73.9
Q ss_pred eeEEEecChHHHHHHHHHHhCCCCeeccccccccccc-cccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCCCC
Q 007728 303 LDAVATGSMAQYIHLLDYYSGSLPIASMLYSSSECFF-GLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDFQP 381 (591)
Q Consensus 303 l~~~~~g~~~~y~~~l~~~~~g~~v~~~~ygaSEg~~-~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~ 381 (591)
++.+.+||.....+++++.+++++++ +.||+||+.. +........+...+.. .+ +.-+++++.+ +
T Consensus 274 lr~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~p-~~-~~~~~i~d~~--~--------- 339 (509)
T 3ivr_A 274 LRAVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGRP-LF-WRTVAVVDAE--D--------- 339 (509)
T ss_dssp CCEEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCEE-CT-TCEEEEECTT--S---------
T ss_pred hheecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCccccc-CC-CcEEEEECCC--C---------
Confidence 67788888777778888888899999 9999999743 2211111111112222 22 3345555433 1
Q ss_pred CccccccccCCCceEEEEEcc---ccceec-------------cccCCEEEEccccCCCCeEEEeeec--Cceecccccc
Q 007728 382 PKLVDLVDVEVGKEYEPIITN---YTGVYR-------------YKVGDILRVAGFHNASPHFHFVRRK--DALLSIDYDK 443 (591)
Q Consensus 382 ~~~~~~~ev~~G~~yelvvTt---~~GlyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~--~~~l~~~Gek 443 (591)
.+|.+|+.|||+|+. ..|||+ |||||+++++ ....+.|+||. +|+++++|++
T Consensus 340 ------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~----~dG~l~~~GR~d~~d~ik~~G~~ 409 (509)
T 3ivr_A 340 ------RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD----ADGYLFYAGRAPEKELIKTGGEN 409 (509)
T ss_dssp ------CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC----TTSCEEEEEEC------------
T ss_pred ------CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC----CCceEEEeCCCCcceeEEECCEE
Confidence 256789999999975 678886 9999999996 36789999999 9999999999
Q ss_pred cCHHHHHHHHHHH
Q 007728 444 TDEADLQKAVENA 456 (591)
Q Consensus 444 i~e~~v~~av~~a 456 (591)
|.+.+||+++.+.
T Consensus 410 v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 410 VYPAEVEGALKQH 422 (509)
T ss_dssp -------------
T ss_pred ECHHHHHHHHHhC
Confidence 9999999999774
No 20
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.54 E-value=4.6e-14 Score=156.74 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=77.8
Q ss_pred eeEEEecCh---HHHHHHHHHH----hC--CCCeeccccccccccccccCCCCC---CCCCCceeecCCCeEEEEEECCC
Q 007728 303 LDAVATGSM---AQYIHLLDYY----SG--SLPIASMLYSSSECFFGLNLNPMC---KTSEASYTIMPNMAYFEFLLHDP 370 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~----~~--g~~v~~~~ygaSEg~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~ 370 (591)
++.+++||. ....+++.+. ++ +++++ +.||+||+...+...+.. .+...+.. .+ ..-+++++.+.
T Consensus 298 lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p-~~-~~~~~i~d~~~ 374 (549)
T 3g7s_A 298 LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGVP-MS-DIELKVISLED 374 (549)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCEE-CT-TCEEEEECSSS
T ss_pred eeEEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCcccc-CC-CCEEEEEeCCC
Confidence 788888884 4555666655 53 28888 999999974322211110 11112222 22 23455665333
Q ss_pred CCCCCCCCCCCCccccccccCCCceEEEEEcc---cccee------------------ccccCCEEEEccccCCCCeEEE
Q 007728 371 GSPASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVY------------------RYKVGDILRVAGFHNASPHFHF 429 (591)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~Gly------------------RYr~GDvV~v~gf~~~~P~i~f 429 (591)
. .+|.+|+.|||+|+. ..||| .|||||+++++ ....+.|
T Consensus 375 g----------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~----~dG~l~~ 434 (549)
T 3g7s_A 375 G----------------RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFID----EEGFLHF 434 (549)
T ss_dssp C----------------CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEEC----TTSCEEE
T ss_pred C----------------cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEc----CCceEEE
Confidence 2 256789999999974 45655 59999999996 3679999
Q ss_pred eeecCceecccccccCHHHHHHHHHH
Q 007728 430 VRRKDALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 430 ~gR~~~~l~~~Geki~e~~v~~av~~ 455 (591)
+||.+|+|+++|++|.+.+||++|.+
T Consensus 435 ~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 435 QDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp EEEC------------CHHHHHHHTT
T ss_pred eccccceEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999999965
No 21
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.53 E-value=3.3e-13 Score=148.44 Aligned_cols=131 Identities=12% Similarity=0.164 Sum_probs=87.4
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCC--CCCCceeecCCCeEEEEEECCCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCK--TSEASYTIMPNMAYFEFLLHDPGSPASTS 377 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~--~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 377 (591)
++.+++||. ....+++++.+ |++++ +.||+||+.+.+....... +...+. ..++ .-+++++.+..
T Consensus 274 lr~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~~~i~d~~g~------ 343 (505)
T 3nyq_A 274 ARLLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGV-PLPG-VELRLVEEDGT------ 343 (505)
T ss_dssp CSEEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTT-CEEEEC-----------
T ss_pred ceEEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCccc-CCCC-CEEEEECCCCC------
Confidence 677888884 45667777777 88999 9999999854332211111 111122 1222 23445443311
Q ss_pred CCCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeec-Cceecc
Q 007728 378 DFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRK-DALLSI 439 (591)
Q Consensus 378 ~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~-~~~l~~ 439 (591)
.+. .+..|+.|||+|+. ..|||. |||||+++++ ....+.|+||. ++++++
T Consensus 344 ------~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~----~dG~l~~~GR~~d~~ik~ 411 (505)
T 3nyq_A 344 ------PIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD----PDGYVRIVGRKATDLIKS 411 (505)
T ss_dssp ------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC----TTSCEEEEEESSCCCEEE
T ss_pred ------Ccc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC----CCccEEEeCCccCceEEe
Confidence 111 12348999999974 567763 9999999996 36789999997 589999
Q ss_pred cccccCHHHHHHHHHH
Q 007728 440 DYDKTDEADLQKAVEN 455 (591)
Q Consensus 440 ~Geki~e~~v~~av~~ 455 (591)
+|++|.+.+||++|.+
T Consensus 412 ~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 412 GGYKIGAGEIENALLE 427 (505)
T ss_dssp TTEEECHHHHHHHHTT
T ss_pred CCEEECHHHHHHHHHH
Confidence 9999999999999965
No 22
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.53 E-value=6.9e-13 Score=148.21 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=90.2
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCC--CCCCCceeecCCCeEEEEEECCCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMC--KTSEASYTIMPNMAYFEFLLHDPGSPASTS 377 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 377 (591)
++.+++||. ...++++++.+ |++++ +.||+||+.+.+...+.. .+...+.. .++ .-.++++.+ +
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~--g----- 392 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGTA-ASC-YDVQIIDDK--G----- 392 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEE-CTT-CCEEEECTT--S-----
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCccccc-CCC-ceEEEECCC--C-----
Confidence 677777774 45667787878 89998 999999975432221111 11112222 222 235555432 1
Q ss_pred CCCCCccccccccCCCceEEEEEc-----c---ccceec-------------cccCCEEEEccccCCCCeEEEeeecCce
Q 007728 378 DFQPPKLVDLVDVEVGKEYEPIIT-----N---YTGVYR-------------YKVGDILRVAGFHNASPHFHFVRRKDAL 436 (591)
Q Consensus 378 ~~~~~~~~~~~ev~~G~~yelvvT-----t---~~GlyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~ 436 (591)
.+|.+|+.|||+|+ . ..|||. |+|||+++++. ...+.|+||.+|+
T Consensus 393 ----------~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~GR~dd~ 458 (570)
T 3c5e_A 393 ----------NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFMGRADDI 458 (570)
T ss_dssp ----------CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEEEGGGC
T ss_pred ----------CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEEecCCCE
Confidence 24678999999997 2 456763 99999999963 5689999999999
Q ss_pred ecccccccCHHHHHHHHHH
Q 007728 437 LSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 437 l~~~Geki~e~~v~~av~~ 455 (591)
|+++|++|.+.+||++|.+
T Consensus 459 Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 459 INSSGYRIGPSEVENALME 477 (570)
T ss_dssp EEETTEEECHHHHHHHHHT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999999976
No 23
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.52 E-value=3.1e-13 Score=150.19 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=89.8
Q ss_pred CceeeEEEecCh---HHHHHHHHHHhC-----CCCeeccccccccccccccCCCCCCC--------------------C-
Q 007728 300 TKYLDAVATGSM---AQYIHLLDYYSG-----SLPIASMLYSSSECFFGLNLNPMCKT--------------------S- 350 (591)
Q Consensus 300 l~~l~~~~~g~~---~~y~~~l~~~~~-----g~~v~~~~ygaSEg~~~i~~~~~~~~--------------------~- 350 (591)
++.++.+++||. ....+++.+.++ +++++ +.||+||+.+.+...+.... +
T Consensus 298 l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (576)
T 3gqw_A 298 LSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFM-PCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGA 376 (576)
T ss_dssp CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEE-EEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCT
T ss_pred hhhhHhhhccCccCCHHHHHHHHHHHhhcCCCccccc-ccCCcccccceeecccccCCccccccchhhhcccCcccccCc
Confidence 344788888884 455667777664 67888 99999997543221111000 0
Q ss_pred ---------CCceeecCCCeEEEEEECCCCCCCCCCCCCCCccccccccCCCceEEEEEcc---ccceec----------
Q 007728 351 ---------EASYTIMPNMAYFEFLLHDPGSPASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR---------- 408 (591)
Q Consensus 351 ---------~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR---------- 408 (591)
..+. ..|+ .-+++++.+ + .+|.+|+.|||+|.. ..|||+
T Consensus 377 ~~~~~~~~~~~G~-p~~~-~~~~i~d~~--g---------------~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~ 437 (576)
T 3gqw_A 377 ETRAVSTFVNCGK-ALPE-HGIEIRNEA--G---------------MPVAERVVGHICISGPSLMSGYFGDQVSQDEIAA 437 (576)
T ss_dssp TCCCEEEEEBCCE-ECTT-CEEEEECTT--S---------------CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHH
T ss_pred cccCccceeecCC-cCCC-CeEEEECCC--C---------------CCCCCCCeEEEEEeCccccccccCCccccccccC
Confidence 0011 1122 223444321 1 246789999999974 577886
Q ss_pred ---cccCCEEEEccccCCCCeEEEeeecCceecccccccCHHHHHHHHHH
Q 007728 409 ---YKVGDILRVAGFHNASPHFHFVRRKDALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 409 ---Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~Geki~e~~v~~av~~ 455 (591)
|+|||++++. ...+.|+||.+|+|+++|++|.+.+||++|.+
T Consensus 438 ~g~~~TGDl~~~~-----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 482 (576)
T 3gqw_A 438 TGWLDTGDLGYLL-----DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQ 482 (576)
T ss_dssp HSCEEEEEEEEEE-----TTEEEEEEETTTCEEETTEEECHHHHHHHHTT
T ss_pred CCeeeccceEEEE-----CCEEEEEecCcceEEECCEEECHHHHHHHHHh
Confidence 9999999883 46899999999999999999999999999976
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.52 E-value=4.9e-14 Score=155.26 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=86.2
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCC-------CCCCCceeecCCCeEEEEEECCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMC-------KTSEASYTIMPNMAYFEFLLHDPGS 372 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~-------~~~~~~~~l~~~~~~~EFip~~~~~ 372 (591)
++.+++||. ....+++.+.+++++++ +.||+||+.+.+.....+ .....+. ..|+ .-.++++.+ +
T Consensus 266 lr~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~-~~~~i~d~~--g 340 (521)
T 3l8c_A 266 LTHFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPD-SPTYIIDED--G 340 (521)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTT-SCEEEECTT--S
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCC-CEEEEECCC--c
Confidence 677777774 45667787888899999 999999974432110000 0000111 1222 234455432 1
Q ss_pred CCCCCCCCCCccccccccCCCceEEEEEcc---ccceec-----------------cccCCEEEEccccCCCCeEEEeee
Q 007728 373 PASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR-----------------YKVGDILRVAGFHNASPHFHFVRR 432 (591)
Q Consensus 373 ~~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR-----------------Yr~GDvV~v~gf~~~~P~i~f~gR 432 (591)
.+|.+|+.|||+|+. ..|||+ |+|||+++++ ....+.|+||
T Consensus 341 ---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d----~dG~l~~~GR 401 (521)
T 3l8c_A 341 ---------------KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT----EDNILLYGGR 401 (521)
T ss_dssp ---------------CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC----SSSCEEEEEE
T ss_pred ---------------CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe----CCCeEEEeCc
Confidence 256789999999975 567763 9999999996 3678999999
Q ss_pred cCceecccccccCHHHHHHHHHH
Q 007728 433 KDALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 433 ~~~~l~~~Geki~e~~v~~av~~ 455 (591)
.+|+|+++|++|++.+||++|.+
T Consensus 402 ~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 402 LDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp GGGBCC-----CBHHHHHHHHHT
T ss_pred ccceEeECCEEeCHHHHHHHHHc
Confidence 99999999999999999999975
No 25
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.52 E-value=3.9e-14 Score=157.26 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=71.7
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCC---CCCceeecCCCeEEEEEECCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKT---SEASYTIMPNMAYFEFLLHDPGSPAST 376 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~---~~~~~~l~~~~~~~EFip~~~~~~~~~ 376 (591)
++.+++||. ....+++++.+ |++++ +.||+||+.+.+........ ...+..+.+ ..-+++++.+ +
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~--~---- 379 (544)
T 3o83_A 309 LKLLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS-DDEIKIVDEQ--Y---- 379 (544)
T ss_dssp CCEEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT--S----
T ss_pred ceEEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCC-CcEEEEECCC--C----
Confidence 677788874 46667788888 89998 99999998553321110000 011222222 2344555422 1
Q ss_pred CCCCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeecCceecc
Q 007728 377 SDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRKDALLSI 439 (591)
Q Consensus 377 ~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~ 439 (591)
.+|.+|+.|||+|+. ..|||+ |||||+++++ ....+.|+||.+|+|++
T Consensus 380 -----------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~----~dG~l~~~GR~dd~ik~ 444 (544)
T 3o83_A 380 -----------REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT----PDGNLRVVGRIKDQINR 444 (544)
T ss_dssp -----------CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEEC----TTSCEEEEEEEC-----
T ss_pred -----------CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEc----CCCCEEEEeecCCEEEe
Confidence 256789999999975 567763 9999999996 36789999999999999
Q ss_pred cccccCHHHHHHHHHHH
Q 007728 440 DYDKTDEADLQKAVENA 456 (591)
Q Consensus 440 ~Geki~e~~v~~av~~a 456 (591)
+|++|++.+||++|.+.
T Consensus 445 ~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 445 GGEKIASEEIEKLILLH 461 (544)
T ss_dssp -----------------
T ss_pred CCEEECHHHHHHHHHhC
Confidence 99999999999999764
No 26
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.52 E-value=8.1e-14 Score=155.59 Aligned_cols=130 Identities=14% Similarity=0.075 Sum_probs=67.8
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccC---CCCCCCC---CCceeecCCCeEEEEEECCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNL---NPMCKTS---EASYTIMPNMAYFEFLLHDPGSP 373 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~---~~~~~~~---~~~~~l~~~~~~~EFip~~~~~~ 373 (591)
++.+++||. ....+++.+.+++++++ +.||+||+...... ....... ..+.. .+ +.-+.+++ +.+
T Consensus 328 lr~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~-~~~v~i~d--~~~- 401 (570)
T 4gr5_A 328 VRYAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVP-LA-GKRAYVLD--DDL- 401 (570)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEE-CT-TEEEEEEC--TTS-
T ss_pred ceEEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCcccccee-eC-CCEEEEEC--CCC-
Confidence 677888884 35567777778789999 99999997432110 0000000 01221 12 22344443 221
Q ss_pred CCCCCCCCCccccccccCCCceEEEEEcc---ccceec----------------------cccCCEEEEccccCCCCeEE
Q 007728 374 ASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR----------------------YKVGDILRVAGFHNASPHFH 428 (591)
Q Consensus 374 ~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR----------------------Yr~GDvV~v~gf~~~~P~i~ 428 (591)
.++.+|+.|||+|+. ..|||+ |||||+++++ ....+.
T Consensus 402 --------------~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d----~dG~l~ 463 (570)
T 4gr5_A 402 --------------KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRR----ADGVLE 463 (570)
T ss_dssp --------------CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEEC----TTSCEE
T ss_pred --------------CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEEC----CCCeEE
Confidence 256789999999964 566763 9999999996 367899
Q ss_pred EeeecCceecccccccCHHHHHHHHHHH
Q 007728 429 FVRRKDALLSIDYDKTDEADLQKAVENA 456 (591)
Q Consensus 429 f~gR~~~~l~~~Geki~e~~v~~av~~a 456 (591)
|+||.+|+|+++|++|++.+||++|.+.
T Consensus 464 ~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 464 YVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp EEEC------------------------
T ss_pred EEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 9999999999999999999999999763
No 27
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.51 E-value=1.9e-13 Score=151.61 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=90.6
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCC----CCCceeecCCCeEEEEEECCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKT----SEASYTIMPNMAYFEFLLHDPGSPAS 375 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~----~~~~~~l~~~~~~~EFip~~~~~~~~ 375 (591)
++.+++||. ....+++++.+ |++++ +.||+||+.+.+.. ...+. ...+..+ ++..-..+++.+ +
T Consensus 300 lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~-~~~~~~~i~d~~--~--- 370 (539)
T 1mdb_A 300 LQVLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTR-LDDPEEIIVNTQGKPM-SPYDESRVWDDH--D--- 370 (539)
T ss_dssp CCEEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECC-TTSCHHHHHHCCCEES-STTCEEEEECTT--S---
T ss_pred eeEEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccC-CCCcHHhcCCCCCccc-CCCceEEEECCC--C---
Confidence 678888874 45667777778 78998 99999998654322 11110 0112221 222234444422 1
Q ss_pred CCCCCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeecCceec
Q 007728 376 TSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRKDALLS 438 (591)
Q Consensus 376 ~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~ 438 (591)
.+|.+|+.|||+|+. ..|||+ |||||+++++. ...+.|+||.+|+|+
T Consensus 371 ------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ik 434 (539)
T 1mdb_A 371 ------------RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVEGRAKDQIN 434 (539)
T ss_dssp ------------CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEEGGGCEE
T ss_pred ------------CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEeccccceEE
Confidence 256789999999974 456663 99999999963 568999999999999
Q ss_pred ccccccCHHHHHHHHHH
Q 007728 439 IDYDKTDEADLQKAVEN 455 (591)
Q Consensus 439 ~~Geki~e~~v~~av~~ 455 (591)
++|++|.+.+||++|.+
T Consensus 435 ~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 435 RGGEKVAAEEVENHLLA 451 (539)
T ss_dssp CSSCEECHHHHHHHHTT
T ss_pred ECCEEECHHHHHHHHHh
Confidence 99999999999999965
No 28
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.51 E-value=1.1e-13 Score=152.76 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=85.1
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccC-CC---CCCCCCCceeecCCCeEEEEEECCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNL-NP---MCKTSEASYTIMPNMAYFEFLLHDPGSPAS 375 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~-~~---~~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 375 (591)
++.+++||. ....+.+++. +++++ +.||+||+...... .+ .......+.. . ...-.++++ +.+
T Consensus 286 lr~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~-~-~~~~~~i~d--~~~--- 355 (517)
T 3r44_A 286 FRYFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGRA-T-MFTDVAVRG--DDG--- 355 (517)
T ss_dssp CCEEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBEE-C-TTEEEEEEC--TTS---
T ss_pred ccEEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCcC-C-CCeEEEEEC--CCC---
Confidence 688888884 3445555553 78998 99999997432111 11 1111111221 1 222233333 221
Q ss_pred CCCCCCCccccccccCCCceEEEEEcc---ccceec-------------cccCCEEEEccccCCCCeEEEeeecCceecc
Q 007728 376 TSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR-------------YKVGDILRVAGFHNASPHFHFVRRKDALLSI 439 (591)
Q Consensus 376 ~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~ 439 (591)
..+..| .|||+|+. ..|||+ |||||+++++ ....+.|+||.+|+|++
T Consensus 356 ------------~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~----~dG~l~~~GR~dd~ik~ 418 (517)
T 3r44_A 356 ------------VIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEID----DEGYLYIKDRLKDMIIS 418 (517)
T ss_dssp ------------CEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEEC----TTSCEEEEECGGGCEEE
T ss_pred ------------CCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEc----CCeeEEEecCCcCEEEE
Confidence 133567 89999975 577875 9999999996 36789999999999999
Q ss_pred cccccCHHHHHHHHHH
Q 007728 440 DYDKTDEADLQKAVEN 455 (591)
Q Consensus 440 ~Geki~e~~v~~av~~ 455 (591)
+|++|.+.+||++|.+
T Consensus 419 ~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 419 GGENVYPAEIESVIIG 434 (517)
T ss_dssp TTEEECHHHHHHHHTT
T ss_pred CCEEECHHHHHHHHHh
Confidence 9999999999999865
No 29
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.50 E-value=5.3e-13 Score=151.95 Aligned_cols=234 Identities=15% Similarity=0.135 Sum_probs=122.9
Q ss_pred CceeeEEEecCh---HHHHHHHHHHhC--CCCeeccccccccccccccCC-C--CC--CCCCCceeecCCCeEEEEEECC
Q 007728 300 TKYLDAVATGSM---AQYIHLLDYYSG--SLPIASMLYSSSECFFGLNLN-P--MC--KTSEASYTIMPNMAYFEFLLHD 369 (591)
Q Consensus 300 l~~l~~~~~g~~---~~y~~~l~~~~~--g~~v~~~~ygaSEg~~~i~~~-~--~~--~~~~~~~~l~~~~~~~EFip~~ 369 (591)
++.++.+++||. ....+.+.+.+| +++++ +.||.||+...+... + .. .+...+.. .++ .-.++++.+
T Consensus 383 l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p-~~g-~~v~i~d~~ 459 (663)
T 1ry2_A 383 LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASFP-FFG-IDAVVLDPN 459 (663)
T ss_dssp CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCEE-CTT-CCEEEECSS
T ss_pred cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCccccC-cCC-CeEEEEcCC
Confidence 444788888885 455677777774 38999 999999974321111 1 01 11112222 222 234555432
Q ss_pred CCCCCCCCCCCCCccccccccCC-CceEEEEEcc-----cccee----------------ccccCCEEEEccccCCCCeE
Q 007728 370 PGSPASTSDFQPPKLVDLVDVEV-GKEYEPIITN-----YTGVY----------------RYKVGDILRVAGFHNASPHF 427 (591)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~ev~~-G~~yelvvTt-----~~Gly----------------RYr~GDvV~v~gf~~~~P~i 427 (591)
++ .+|.. |+.|||+|+. ..|+| -|+|||+++++ ....+
T Consensus 460 ~g----------------~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d----~dG~l 519 (663)
T 1ry2_A 460 TG----------------EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKD----KDGYI 519 (663)
T ss_dssp ST----------------TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEEC----TTCCE
T ss_pred CC----------------CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEc----CCCCE
Confidence 21 13445 8999999975 23454 29999999996 35789
Q ss_pred EEeeecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCc-eeEEEEEEeecCCCC-CC-Ch---H
Q 007728 428 HFVRRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPG-HHVIYWEILVKDPAN-SP-TD---D 501 (591)
Q Consensus 428 ~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~-~Y~l~~E~~~~~~~~-~~-~~---~ 501 (591)
.|+||.+|+|++.|++|...+||++|.+. .+ |.+..++.-.....+ .-+.|+.+.. +... .. +. +
T Consensus 520 ~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~-~~~~~~~~~~~~~~ 590 (663)
T 1ry2_A 520 WILGRVDDVVNVSGHRLSTAEIEAAIIED------PI--VAECAVVGFNDDLTGQAVAAFVVLKN-KSSWSTATDDELQD 590 (663)
T ss_dssp EECSCTTSCBCSSSCCBCHHHHHHHHHSS------TT--EEEEEEECCCCCTTSCCCEEEEEEC-------------CCS
T ss_pred EEEeecCCEEEECCEEcCHHHHHHHHHhC------CC--cceEEEEEEecCCCCeEEEEEEEEcC-CCccccccchhHHH
Confidence 99999999999999999999999999652 23 445555432111111 3346666542 1100 00 10 1
Q ss_pred HHHHHHHHHHhhhCHHHHHhhhccCccCCeEEEEeCC---ccHHHHHHHHHhcCCCCC--CCccccccCCHhHHHHHhh
Q 007728 502 VLKQCCLAMEESLDSAYREARVVDKTIGPLEIRLVKT---GTFEELMDYAISRGASIN--QYKVARCVGSTSILKLLDS 575 (591)
Q Consensus 502 ~~~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~---gtf~~~~~~~~~~G~~~~--Q~K~Pr~~~~~~~~~~l~~ 575 (591)
..+++.+.+.+.| .....|-+|.+|+. ..=.+.++..+.+=.... +++.+--+.|++.++.+.+
T Consensus 591 l~~~l~~~l~~~L----------~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~ 659 (663)
T 1ry2_A 591 IKKHLVFTVRKDI----------GPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLID 659 (663)
T ss_dssp HHHHHHHHHHHHT----------CTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHhC----------CCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHH
Confidence 1222333332222 11234556666542 110122223332211222 6777888899999998865
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.49 E-value=2.3e-13 Score=151.34 Aligned_cols=131 Identities=17% Similarity=0.265 Sum_probs=68.0
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCCCC-Cc-eeecCCCeEEEEEECCCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSE-AS-YTIMPNMAYFEFLLHDPGSPASTS 377 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~-~~-~~l~~~~~~~EFip~~~~~~~~~~ 377 (591)
++.+++||. ....+.+++.+ +++++ +.||+||+.+.+......+... .. ....+ ..-..+++.+..
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~-~~~~~i~d~~~~------ 366 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTRCIGHPLG-DSVAHVLAPGSN------ 366 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTTEEEEECT-TCEEEEECTTSS------
T ss_pred eEEEEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCccccccCC-CCeEEEEeCCCC------
Confidence 677888874 34455666655 78998 9999999743221111111101 11 11112 233445543322
Q ss_pred CCCCCccccccccCCCceEEEEEcc---cccee---------------ccccCCEEEEccccCCCCeEEEeeecCceecc
Q 007728 378 DFQPPKLVDLVDVEVGKEYEPIITN---YTGVY---------------RYKVGDILRVAGFHNASPHFHFVRRKDALLSI 439 (591)
Q Consensus 378 ~~~~~~~~~~~ev~~G~~yelvvTt---~~Gly---------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~ 439 (591)
.+|.+|+.|||+|.. ..||| .|+|||+++++ ....+.|+||.+|+|++
T Consensus 367 ----------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d----~dG~l~~~GR~dd~Ik~ 432 (562)
T 3ite_A 367 ----------EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD----ADSSILFLGRKDEQVKV 432 (562)
T ss_dssp ----------CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC----TTSCEEEEEEC------
T ss_pred ----------CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc----CCCeEEEEccccCEEeE
Confidence 246789999999964 56776 39999999996 36789999999999999
Q ss_pred cccccCHHHHHHHHHHH
Q 007728 440 DYDKTDEADLQKAVENA 456 (591)
Q Consensus 440 ~Geki~e~~v~~av~~a 456 (591)
+|++|++.+||++|.+.
T Consensus 433 ~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 433 RGQRLELGEVSEVIRSL 449 (562)
T ss_dssp -----------------
T ss_pred CcEEECHHHHHHHHHhc
Confidence 99999999999999764
No 31
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.48 E-value=2e-13 Score=153.83 Aligned_cols=129 Identities=11% Similarity=0.165 Sum_probs=90.7
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCC---CCCceeecCCCeEEEEEECCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKT---SEASYTIMPNMAYFEFLLHDPGSPAST 376 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~---~~~~~~l~~~~~~~EFip~~~~~~~~~ 376 (591)
++.+++||. ....+++.+.+ |++++ +.||+||+.+.......... ...+..+.+ ..-..+++.+ +
T Consensus 304 lr~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~--~---- 374 (617)
T 3rg2_A 304 LKLLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP-DDEVWVADAE--G---- 374 (617)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT--S----
T ss_pred ccEEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCC-CceEEEECCC--C----
Confidence 678888884 45667777777 79998 99999998553321110000 011222222 2233444322 1
Q ss_pred CCCCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeecCceecc
Q 007728 377 SDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRKDALLSI 439 (591)
Q Consensus 377 ~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~ 439 (591)
..|..|+.|||+|+. ..|||. |||||++++. ....+.|+||.||++++
T Consensus 375 -----------~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~----~dG~l~~~GR~dd~iki 439 (617)
T 3rg2_A 375 -----------NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID----PEGYITVQGREKDQINR 439 (617)
T ss_dssp -----------CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEEEEECSSEEEE
T ss_pred -----------CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc----CCceEEEEeecCCEEEE
Confidence 256789999999974 567764 9999999996 36789999999999999
Q ss_pred cccccCHHHHHHHHHH
Q 007728 440 DYDKTDEADLQKAVEN 455 (591)
Q Consensus 440 ~Geki~e~~v~~av~~ 455 (591)
+|++|.+.+||++|.+
T Consensus 440 ~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 440 GGEKIAAEEIENLLLR 455 (617)
T ss_dssp TTEEEEHHHHHHHHTT
T ss_pred CCEEeCHHHHHHHHHh
Confidence 9999999999999976
No 32
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.47 E-value=2.3e-13 Score=161.43 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=74.9
Q ss_pred ceeeEEEecCh---HHHHHHHHHHhCCCCeecccccccccccc--ccC--CCC-C--CCCCCceeecCCCeEEEEEECCC
Q 007728 301 KYLDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFG--LNL--NPM-C--KTSEASYTIMPNMAYFEFLLHDP 370 (591)
Q Consensus 301 ~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~--i~~--~~~-~--~~~~~~~~l~~~~~~~EFip~~~ 370 (591)
+.++.+++||. ....+.+++.+++++++ +.||+||+... .+. ... . .....+. ..++ .-+++++++.
T Consensus 344 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~~ 420 (979)
T 3tsy_A 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRN-AEMKIVDPDT 420 (979)
T ss_dssp TTCCEEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSS-CEEEEECTTS
T ss_pred cceEEEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCC-cEEEEEeCCC
Confidence 34788888884 35667888888899999 99999997432 111 000 0 0011122 2222 3455665443
Q ss_pred CCCCCCCCCCCCccccccccCCCceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeEEEeeec
Q 007728 371 GSPASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHFHFVRRK 433 (591)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~ 433 (591)
. ..|.+|+.|||+|+. ..|||+ |||||+++++ ....+.|+||.
T Consensus 421 ~----------------~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~ 480 (979)
T 3tsy_A 421 G----------------DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID----DDDELFIVDRL 480 (979)
T ss_dssp C----------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEEEEES
T ss_pred C----------------CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEc----CCceEEEecCC
Confidence 2 246789999999974 567764 9999999996 35789999999
Q ss_pred CceecccccccCHHHHHHHHHHH
Q 007728 434 DALLSIDYDKTDEADLQKAVENA 456 (591)
Q Consensus 434 ~~~l~~~Geki~e~~v~~av~~a 456 (591)
+|+|+++|++|.+.+||++|.+.
T Consensus 481 dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 481 KELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp CC---------------------
T ss_pred CCEEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999763
No 33
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.44 E-value=2e-12 Score=141.71 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=82.7
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccc-cccCCCC---CCCCCCceeecCCCeEEEEEECCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFF-GLNLNPM---CKTSEASYTIMPNMAYFEFLLHDPGSPAS 375 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~-~i~~~~~---~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 375 (591)
++.+++||. ....+.+++ + +++++ +.||+||+.. .+...+. ..+...+.. .++ .-.+++++
T Consensus 276 lr~i~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p-~~~-~~~~i~d~------- 343 (501)
T 3ipl_A 276 LQKILLGGAKLSATMIETALQ-Y-NLPIY-NSFGMTETCSQFLTATPEMLHARPDTVGMP-SAN-VDVKIKNP------- 343 (501)
T ss_dssp CCEEEECSSCCCHHHHHHHHH-T-TCCEE-EEEEEGGGTEEEEEECHHHHHHCTTCCBEE-CTT-CEEEEESC-------
T ss_pred ccEEEEeCCCCCHHHHHHHHH-h-CCCEe-ccccccccccceeecCccccccCCCCCCCC-CCC-cEEEEecC-------
Confidence 677888874 345556655 4 89999 9999999643 2211110 001111221 122 22333321
Q ss_pred CCCCCCCccccccccCCCceEEEEEcc---ccceec------------cccCCEEEEccccCCCCeEEEeeecCceeccc
Q 007728 376 TSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR------------YKVGDILRVAGFHNASPHFHFVRRKDALLSID 440 (591)
Q Consensus 376 ~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~ 440 (591)
.+|+.|||+|+. ..|+|. |+|||+++++ ....+.|+||.+|+++++
T Consensus 344 ---------------~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~----~~G~l~~~GR~dd~ik~~ 404 (501)
T 3ipl_A 344 ---------------NKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEID----HEGYVMIYDRRKDLIISG 404 (501)
T ss_dssp ---------------CSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEEC----TTSCEEEEEECCCCEECS
T ss_pred ---------------CCCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEc----CCCeEEEEccccceEEEC
Confidence 246789999964 567775 9999999996 367999999999999999
Q ss_pred ccccCHHHHHHHHHH
Q 007728 441 YDKTDEADLQKAVEN 455 (591)
Q Consensus 441 Geki~e~~v~~av~~ 455 (591)
|++|++.+||+++.+
T Consensus 405 G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 405 GENIYPYQIETVAKQ 419 (501)
T ss_dssp SCEECHHHHHHHHTT
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999998865
No 34
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.43 E-value=1.1e-12 Score=146.30 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=83.7
Q ss_pred eeEEEecChHHHHHHHHHHhCCCCeecccccccccccc-cc-CCCCCC---CCCCceeecCCCeEEEEEECCCCCCCCCC
Q 007728 303 LDAVATGSMAQYIHLLDYYSGSLPIASMLYSSSECFFG-LN-LNPMCK---TSEASYTIMPNMAYFEFLLHDPGSPASTS 377 (591)
Q Consensus 303 l~~~~~g~~~~y~~~l~~~~~g~~v~~~~ygaSEg~~~-i~-~~~~~~---~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 377 (591)
++.+++||.....+.++.+...++++ +.||+||+.+. .. ...... ....|.. .++ .-.++++.+ +
T Consensus 295 lr~~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~--~----- 364 (563)
T 1amu_A 295 IQTLITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAP-IQN-TQIYIVDEN--L----- 364 (563)
T ss_dssp CSEEEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEE-CTT-EEEEEECTT--S-----
T ss_pred ccEEEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCcccce-eCC-CEEEEECCC--c-----
Confidence 67777777522112333333357888 99999997432 21 101000 0011221 222 234444422 1
Q ss_pred CCCCCccccccccCCCceEEEEEcc---cccee--------------------ccccCCEEEEccccCCCCeEEEeeecC
Q 007728 378 DFQPPKLVDLVDVEVGKEYEPIITN---YTGVY--------------------RYKVGDILRVAGFHNASPHFHFVRRKD 434 (591)
Q Consensus 378 ~~~~~~~~~~~ev~~G~~yelvvTt---~~Gly--------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~ 434 (591)
.++.+|+.|||+|+. ..||| .|+|||+++++. ...+.|+||.+
T Consensus 365 ----------~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~~ 430 (563)
T 1amu_A 365 ----------QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRID 430 (563)
T ss_dssp ----------CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEGG
T ss_pred ----------CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEecccc
Confidence 245789999999974 45665 599999999963 56899999999
Q ss_pred ceecccccccCHHHHHHHHHH
Q 007728 435 ALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 435 ~~l~~~Geki~e~~v~~av~~ 455 (591)
|+|+++|++|.+.+||++|.+
T Consensus 431 d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 431 NQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp GEEEETTEEEEHHHHHHHHTT
T ss_pred CEEEECCEEeCHHHHHHHHHh
Confidence 999999999999999999965
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.43 E-value=8.1e-13 Score=149.26 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=87.4
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeecccccccccccccc---CCCCC---CCCCCceeecCCCeEEEEEECCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLN---LNPMC---KTSEASYTIMPNMAYFEFLLHDPGSP 373 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~---~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~ 373 (591)
++.+++||. ....+++.+.+++++++ +.||+||+.+... ..+.. .+...+.. . .+.-..+++.+..
T Consensus 278 lr~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~-~~~~~~i~d~~~~-- 352 (620)
T 4dg8_A 278 LRQLLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA-I-AGTAVLLLDEHGQ-- 352 (620)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBEE-C-TTEEEEEECTTSC--
T ss_pred ccEEEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCceec-c-cCcEEEEECccCC--
Confidence 677888884 34455555666789999 9999999743221 11100 00011121 1 2233444443211
Q ss_pred CCCCCCCCCccccccccCCCceEEEEEcc---ccceec---------------------cccCCEEEEccccCCCCeEEE
Q 007728 374 ASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVYR---------------------YKVGDILRVAGFHNASPHFHF 429 (591)
Q Consensus 374 ~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~GlyR---------------------Yr~GDvV~v~gf~~~~P~i~f 429 (591)
. -+.+|+.|||+|.. ..|||. |||||++++. ....+.|
T Consensus 353 ----------~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~----~dG~l~~ 414 (620)
T 4dg8_A 353 ----------E----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD----EQGRLRF 414 (620)
T ss_dssp ----------B----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC----TTSCEEE
T ss_pred ----------C----CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC----CCCeEEE
Confidence 1 14679999999963 456652 9999999996 4678999
Q ss_pred eeecCceecccccccCHHHHHHHHHH
Q 007728 430 VRRKDALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 430 ~gR~~~~l~~~Geki~e~~v~~av~~ 455 (591)
+||.||+++++|++|.+.+||++|.+
T Consensus 415 ~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 415 IGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp EECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred EccCCCEEEECCEEcCHHHHHHHHHh
Confidence 99999999999999999999999976
No 36
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.36 E-value=4e-12 Score=140.94 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=83.5
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCC-------C------CCCCceeecCCCeEEEEE
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMC-------K------TSEASYTIMPNMAYFEFL 366 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~-------~------~~~~~~~l~~~~~~~EFi 366 (591)
++.+++||. ...++++ +.+ |++++ +.||+||+...+...... + ....+.. .|+ .-++++
T Consensus 295 lr~i~~gG~~l~~~~~~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p-~~~-~~~~i~ 369 (541)
T 1v25_A 295 LRRLVVGGSAAPRSLIARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP-IPL-VRLRVA 369 (541)
T ss_dssp CCEEEECSSCCCHHHHHHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEE-CTT-CEEEEE
T ss_pred ccEEEECCCCCCHHHHHHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCCc-CCC-cEEEEE
Confidence 778888884 4556667 456 89998 999999974322111110 0 0011221 222 234555
Q ss_pred ECCCCCCCCCCCCCCCccccccccCC--CceEEEEEcc---ccceec--------------cccCCEEEEccccCCCCeE
Q 007728 367 LHDPGSPASTSDFQPPKLVDLVDVEV--GKEYEPIITN---YTGVYR--------------YKVGDILRVAGFHNASPHF 427 (591)
Q Consensus 367 p~~~~~~~~~~~~~~~~~~~~~ev~~--G~~yelvvTt---~~GlyR--------------Yr~GDvV~v~gf~~~~P~i 427 (591)
+.+. .++.. |+.|||+|+. ..|||. |||||+++++. ...+
T Consensus 370 d~~g-----------------~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG~l 428 (541)
T 1v25_A 370 DEEG-----------------RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EGYV 428 (541)
T ss_dssp CTTS-----------------CBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TCCE
T ss_pred CCCC-----------------CCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----CceE
Confidence 4321 12332 3689999974 567773 99999999963 5689
Q ss_pred EEeeecCceecccccccCHHHHHHHHHHH
Q 007728 428 HFVRRKDALLSIDYDKTDEADLQKAVENA 456 (591)
Q Consensus 428 ~f~gR~~~~l~~~Geki~e~~v~~av~~a 456 (591)
.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 429 ~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 429 EIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp EEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred EEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 99999999999999999999999999763
No 37
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.30 E-value=3.5e-12 Score=134.38 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=77.5
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCCCCCCCCceeecCCCeEEEEEECCCCCCCCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPMCKTSEASYTIMPNMAYFEFLLHDPGSPASTSDF 379 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~ 379 (591)
++.+++||. ....+++++ + |++++ +.||+||+...+...+...+.. .... ++...
T Consensus 150 lr~v~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TEt~~~~~~~~~~~~~~-------g~~~---~~~pg--------- 207 (358)
T 4gs5_A 150 LGKVLLGGAPVNHALAMQISD-L-AMPVY-QSYGMTETVSHVALKALNGPEA-------SELY---VFLPG--------- 207 (358)
T ss_dssp GCSEEECSSCCCHHHHHHHHT-C-SSCEE-EEEECGGGSSEEEEEECSSTTC-------CSCE---EECTT---------
T ss_pred ceEEEEcccCCCchheecccc-c-CceEE-eccccccccceeeccccccccc-------ceee---ccCCC---------
Confidence 677788874 344555554 3 79999 9999999754332222111100 0001 12111
Q ss_pred CCCccccccccCCCceEEEEEcc---ccceeccccCCEEEEccccCCCCeEEEeeecCceecccccccCHHHHHHHHHHH
Q 007728 380 QPPKLVDLVDVEVGKEYEPIITN---YTGVYRYKVGDILRVAGFHNASPHFHFVRRKDALLSIDYDKTDEADLQKAVENA 456 (591)
Q Consensus 380 ~~~~~~~~~ev~~G~~yelvvTt---~~GlyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~Geki~e~~v~~av~~a 456 (591)
.++..++.+|+++.. ..| -|||||+++++. -.+.|+||.+|+|+++|++|++.+||++|...
T Consensus 208 --------v~~~~~~~Gel~~~g~~~~~g--~~~TGDlg~~d~-----~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 208 --------IQYGVDERGCLHISGAVTNGQ--TVQTNDLVEIHG-----NAFQWIGRADNVINSGGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp --------CEEEECTTSEEEEESGGGTTC--CEEEEEEEEECS-----SEEEEEEEGGGEEEETTEEEEHHHHHHHHHHH
T ss_pred --------eEEEecCcCceEEecccccCc--ceecCCcccccc-----CceEEcccccCeEEECCEEECHHHHHHHHHHh
Confidence 134456778998863 233 388999999974 23889999999999999999999999998764
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.27 E-value=4.1e-11 Score=146.18 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=88.2
Q ss_pred eeEEEecCh---HHHHHHHHHHhCCCCeeccccccccccccccCCCC-C-CCC----CCceeecCCCeEEEEEECCCCCC
Q 007728 303 LDAVATGSM---AQYIHLLDYYSGSLPIASMLYSSSECFFGLNLNPM-C-KTS----EASYTIMPNMAYFEFLLHDPGSP 373 (591)
Q Consensus 303 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~-~-~~~----~~~~~l~~~~~~~EFip~~~~~~ 373 (591)
++++++||. ....+++.+.+++++++ +.||.||+.+....... . +.. ..|.. .++. -+.+++ +.+
T Consensus 722 lr~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~~~-~~~i~d--~~~- 795 (1304)
T 2vsq_A 722 LRCILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKP-ISNA-SVYILN--EQS- 795 (1304)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEE-CTTE-EEEEEC--TTS-
T ss_pred ccEEEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCcee-eCCC-EEEEEC--CCc-
Confidence 677888874 35566777777778998 99999998542211110 0 000 11221 2232 222333 221
Q ss_pred CCCCCCCCCccccccccCCCceEEEEEcc---cccee--------------------ccccCCEEEEccccCCCCeEEEe
Q 007728 374 ASTSDFQPPKLVDLVDVEVGKEYEPIITN---YTGVY--------------------RYKVGDILRVAGFHNASPHFHFV 430 (591)
Q Consensus 374 ~~~~~~~~~~~~~~~ev~~G~~yelvvTt---~~Gly--------------------RYr~GDvV~v~gf~~~~P~i~f~ 430 (591)
..|..|+.|||+|.. ..||| .|||||+++.. ....|+|+
T Consensus 796 --------------~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~----~dG~l~~~ 857 (1304)
T 2vsq_A 796 --------------QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWL----PDGTIEYA 857 (1304)
T ss_dssp --------------CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEEC----TTSCEEEE
T ss_pred --------------CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEc----CCCeEEEE
Confidence 245689999999964 44554 39999999996 46789999
Q ss_pred eecCceecccccccCHHHHHHHHHH
Q 007728 431 RRKDALLSIDYDKTDEADLQKAVEN 455 (591)
Q Consensus 431 gR~~~~l~~~Geki~e~~v~~av~~ 455 (591)
||.|++++++|++|...|||.+|.+
T Consensus 858 GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 858 GRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp EEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred cCCCCEEEECCEeeCHHHHHHHHHh
Confidence 9999999999999999999999976
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.68 E-value=1.3e-07 Score=102.21 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=17.6
Q ss_pred cccceeecccccCCCccccccCChHHHHH
Q 007728 99 SPISEFLKSSGTSSGEQKLFPSTQEELDR 127 (591)
Q Consensus 99 ~pi~~f~~TSGTT~G~~K~iP~T~~~l~~ 127 (591)
+.+.+...||||| |+||-+..|...+..
T Consensus 183 ~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 183 PSTAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp CSEEEEECC-------CCCEEEEHHHHHH
T ss_pred CceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 4456889999999 899999999987644
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.31 E-value=0.00045 Score=59.37 Aligned_cols=93 Identities=10% Similarity=0.061 Sum_probs=58.0
Q ss_pred ecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCceeEEEEEEeecCCCCCCChHHHHHHHHHHH
Q 007728 432 RKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGHHVIYWEILVKDPANSPTDDVLKQCCLAME 511 (591)
Q Consensus 432 R~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~~Y~l~~E~~~~~~~~~~~~~~~~~~~~~ld 511 (591)
|.||||+++|.|+++.+||++|.+. .++. ..+.+..+.........+++++.. + ...+...++.+++.+.
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~-~--~~~~~~~~~~l~~~i~ 71 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVELSQ-L--FTDDYGRLQALTREIT 71 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEECT-T--CCCCHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCcc-cceEEEEeccccceeEEEEEEEee-c--cccccchhhhhHHHHH
Confidence 8999999999999999999999752 2322 123332222111123446677642 2 1234556666777776
Q ss_pred hhhCHHHHHhhhccCccCCeEEEEeCCccHHH
Q 007728 512 ESLDSAYREARVVDKTIGPLEIRLVKTGTFEE 543 (591)
Q Consensus 512 ~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~ 543 (591)
+.+ +...| + +++|.+|++|++.+
T Consensus 72 ~~l-------~~~~g-v-~~~v~~v~~~~lPr 94 (109)
T 3lax_A 72 RQL-------KDEIL-V-TPRVKLVPKGALPK 94 (109)
T ss_dssp HHH-------HHHHS-S-CCEEEEECTTCSCC
T ss_pred HHH-------HHHhC-C-ccceEEEcCCeecC
Confidence 666 33333 4 45799999999773
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.07 E-value=0.002 Score=55.45 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=57.5
Q ss_pred eecCceecccccccCHHHHHHHHHHHHHhhcccCceEEeeEeeecCCCCCceeEEEEEEeecCCCCCCChHHHHHHHHHH
Q 007728 431 RRKDALLSIDYDKTDEADLQKAVENASRLLREFDTRILEYTSYAEKKTNPGHHVIYWEILVKDPANSPTDDVLKQCCLAM 510 (591)
Q Consensus 431 gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~~Y~l~~E~~~~~~~~~~~~~~~~~~~~~l 510 (591)
||.+|||+++|.++++.+||++|.+. + ++. ..|.+..+.....-.-++++|+ . +.. .......+.+++.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~-~~~-~~~~~~~~~l~~~i 70 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-S-QLF-TDDYGRLQALTREI 70 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-C-TTC-CCCHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-c-Ccc-ccchhHHHHHHHHH
Confidence 79999999999999999999999872 2 322 1344332211111244577877 2 310 11123445556666
Q ss_pred HhhhCHHHHHhhhccCccCCeEEEEeCCccHHH
Q 007728 511 EESLDSAYREARVVDKTIGPLEIRLVKTGTFEE 543 (591)
Q Consensus 511 d~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~ 543 (591)
.+.+ +...| +.| +|.+|++|++.+
T Consensus 71 ~~~l-------~~~~~-~~~-~v~~v~~~~lPr 94 (109)
T 3gxs_A 71 TRQL-------KDEIL-VTP-RVKLVPKGALPK 94 (109)
T ss_dssp HHHH-------HHHHS-SCC-EEEEECTTCSCC
T ss_pred HHHH-------HHhhC-Cce-EEEEECCCCccC
Confidence 6655 33343 544 999999999764
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=46.90 E-value=86 Score=24.50 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=34.9
Q ss_pred ccCHHHHHHHHHHHHHhhcc-cCceEEeeEeeecCCCCCceeEEEEEEeec
Q 007728 443 KTDEADLQKAVENASRLLRE-FDTRILEYTSYAEKKTNPGHHVIYWEILVK 492 (591)
Q Consensus 443 ki~e~~v~~av~~a~~~l~~-~g~~l~~f~~~~~~~~~p~~Y~l~~E~~~~ 492 (591)
+=.++.+++||.+|++.|+. .++++.+.....+.. .-.||.+-+.+.+.
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lKV~F~ 65 (72)
T 3onr_A 16 TSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDSA-GKITYRIKLEVSFK 65 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECTT-CCEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEEE
Confidence 33488999999999998853 256677777655433 44699988777663
No 43
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=46.08 E-value=1e+02 Score=23.84 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=33.3
Q ss_pred ccCHHHHHHHHHHHHHhhcc-cCceEEeeEeeecCCCCCceeEEEEEEee
Q 007728 443 KTDEADLQKAVENASRLLRE-FDTRILEYTSYAEKKTNPGHHVIYWEILV 491 (591)
Q Consensus 443 ki~e~~v~~av~~a~~~l~~-~g~~l~~f~~~~~~~~~p~~Y~l~~E~~~ 491 (591)
+=.++.+++||.+|++.|+. .++++.+.....+.. .-.||.+-+.+.+
T Consensus 14 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lKV~F 62 (68)
T 2cc6_A 14 ESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAV-EERTYQTEVQVAF 62 (68)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTTS-SSCEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEE
Confidence 34488999999999998853 245566666555433 3459998877765
No 44
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=35.09 E-value=1e+02 Score=23.89 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=36.6
Q ss_pred EEEeeecCceecccccccCHHHHHHHHHHHHHhhcc-cCceEEeeEeeecCCCCCceeEEEEEEee
Q 007728 427 FHFVRRKDALLSIDYDKTDEADLQKAVENASRLLRE-FDTRILEYTSYAEKKTNPGHHVIYWEILV 491 (591)
Q Consensus 427 i~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~-~g~~l~~f~~~~~~~~~p~~Y~l~~E~~~ 491 (591)
|+++|-.. +=.++.+++||.+|++.|+. .++++.+.....+.. .-.||.+-+.+.+
T Consensus 8 iElvGsS~--------~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lkV~F 64 (69)
T 2ux9_A 8 VELVGTSE--------EGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEA-GVKEYQVVLEVGF 64 (69)
T ss_dssp EEEEEEES--------SCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEE
T ss_pred EEEEECCC--------CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEE
Confidence 45555544 33488999999999998853 245566665554332 3358987777765
No 45
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=34.19 E-value=1e+02 Score=24.02 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=36.7
Q ss_pred EEEeeecCceecccccccCHHHHHHHHHHHHHhhcc-cCceEEeeEeeecCCCCCceeEEEEEEee
Q 007728 427 FHFVRRKDALLSIDYDKTDEADLQKAVENASRLLRE-FDTRILEYTSYAEKKTNPGHHVIYWEILV 491 (591)
Q Consensus 427 i~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~-~g~~l~~f~~~~~~~~~p~~Y~l~~E~~~ 491 (591)
|+++|-.. +=.++.|++||.+|++.|+. .++++.+.....+.. .-.||.+-+.+.+
T Consensus 9 iElvGsS~--------~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~dg-ki~~yqV~lKV~F 65 (72)
T 2vxa_A 9 VELTGSSP--------NGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEGG-RVNHWQVTVKVGF 65 (72)
T ss_dssp EEEEEEES--------SCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEE
T ss_pred EEEEECCC--------CCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEE
Confidence 45555544 33488999999999998853 245566665554332 3359987777765
No 46
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=33.97 E-value=1.1e+02 Score=23.71 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=36.5
Q ss_pred EEEeeecCceecccccccCHHHHHHHHHHHHHhhcc-cCceEEeeEeeecCCCCCceeEEEEEEee
Q 007728 427 FHFVRRKDALLSIDYDKTDEADLQKAVENASRLLRE-FDTRILEYTSYAEKKTNPGHHVIYWEILV 491 (591)
Q Consensus 427 i~f~gR~~~~l~~~Geki~e~~v~~av~~a~~~l~~-~g~~l~~f~~~~~~~~~p~~Y~l~~E~~~ 491 (591)
|+++|-.. +=.++.+++||.+|++.|+. .++++.+.....+.. .-.||.+-+.+.+
T Consensus 8 iElvGsS~--------~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lkv~F 64 (69)
T 2yiz_A 8 IEIVGTSP--------DGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDG-AVAHFQVTMKVGF 64 (69)
T ss_dssp EEEEEEET--------TCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEE
T ss_pred EEEEECCC--------CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEE
Confidence 45555544 33488999999999998853 245566665554332 3358987777765
Done!