BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007729
         (591 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K9K|A Chain A, Transposase Domain Of Metnase
 pdb|3K9K|B Chain B, Transposase Domain Of Metnase
          Length = 239

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 267 GFDVGPNPPVN-DNFGENYHGFDMDDNYSEPRDFDNSDDEDD 307
           G++V P+PP + D    NYH F   +N+ + + F N  D ++
Sbjct: 161 GYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAEN 202


>pdb|3K9J|A Chain A, Transposase Domain Of Metnase
 pdb|3K9J|B Chain B, Transposase Domain Of Metnase
          Length = 239

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 267 GFDVGPNPPVN-DNFGENYHGFDMDDNYSEPRDFDNSDDEDD 307
           G++V P+PP + D    NYH F   +N+ + + F N  D ++
Sbjct: 161 GYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAEN 202


>pdb|3F2K|A Chain A, Structure Of The Transposase Domain Of Human
           Histone-Lysine N-Methyltransferase Setmar
 pdb|3F2K|B Chain B, Structure Of The Transposase Domain Of Human
           Histone-Lysine N-Methyltransferase Setmar
          Length = 226

 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 267 GFDVGPNPPVN-DNFGENYHGFDMDDNYSEPRDFDNSDDEDD 307
           G++V P+PP + D    NYH F   +N+ + + F N  D ++
Sbjct: 148 GYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAEN 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,159,025
Number of Sequences: 62578
Number of extensions: 875080
Number of successful extensions: 1550
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1520
Number of HSP's gapped (non-prelim): 25
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)