BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007729
(591 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUR0|CNDH2_ARATH Condensin-2 complex subunit H2 OS=Arabidopsis thaliana GN=CAPH2
PE=2 SV=1
Length = 683
Score = 510 bits (1313), Expect = e-143, Method: Compositional matrix adjust.
Identities = 284/511 (55%), Positives = 350/511 (68%), Gaps = 27/511 (5%)
Query: 17 GGSDVR----FTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAA 72
GG +VR TVQPER+L ANWEVDL++KLE+YLLKICSG++T +E I VNFAEAA
Sbjct: 5 GGGEVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNFAEAA 64
Query: 73 LLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFF 132
LL+QGSVQVYS+KVEYLYNLVL TLEF+S++ Q+Q +GT + E S S V EEND F
Sbjct: 65 LLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEENDLF 124
Query: 133 WGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSD 192
W DD+PV+ KN LDS G DT + FVKPPANLVVLEGDCLDT GDG ELESYLLAT+
Sbjct: 125 WNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLLATTH 184
Query: 193 LYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAK 252
LYRDFILLD D+VAV++FL + KG N +RGSS RKSF S RSGG+A KSS+ K
Sbjct: 185 LYRDFILLDPCDAVAVNEFLGDNYGGKGRNSAHRGSSVRKSFHSSVGRSGGSARKSSVGK 244
Query: 253 NKDVNLPASPRVACG-----FDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSD-DED 306
N+ N+ SP G D G PPV F +N HGFDMD+ Y DF ++D DED
Sbjct: 245 NQGTNVHLSPICGNGPNDQNCDQGSQPPV---FEDNDHGFDMDNEYGGAMDFSDTDADED 301
Query: 307 DPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWE 366
DPWKPLNP+EPG LKVKPF+KVK ++ G S + ++++FPLA+ G IS EL EIW+
Sbjct: 302 DPWKPLNPYEPGKLKVKPFKKVKILKKIGW-SITKDHMTSMFPLARPNGPISSELIEIWK 360
Query: 367 ARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDP-------D 419
++++ASQ YEKLR+ L + G++ A N Y D D+ D D
Sbjct: 361 MHGCASKDEQASQDIPYYEKLREMLVNGGNQPCGANGN---YNDNDKDNHDEANNGDFHD 417
Query: 420 IGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDAL 479
G D D + +MDEDV + +D G A F + FE+G + +LEDLCRSHLDAL
Sbjct: 418 FGEHDGDDAEHPFMDEDVL---NMNDGGAAEFHNYDGFENGESNCQESLEDLCRSHLDAL 474
Query: 480 LANIAETEKQTELAARVSSWKQKIENNLDEQ 510
LANIA++EKQT+LAARVS+WKQKIE NL+EQ
Sbjct: 475 LANIAKSEKQTDLAARVSTWKQKIEQNLEEQ 505
>sp|Q641G4|CNDH2_XENLA Condensin-2 complex subunit H2 OS=Xenopus laevis GN=ncaph2 PE=1
SV=1
Length = 624
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 19 SDVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQ 76
++ RFT +QP R+L NWEVD+A +L +YL ++ Q+ S ++NFAEAALL+Q
Sbjct: 4 AESRFTHLLQPVRDLTKNWEVDVAAQLGEYLEEL--DQICISFDGGKTTMNFAEAALLIQ 61
Query: 77 GSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFD 136
GS +YS+KVEYLY+LV L+FIS K + Q E+ + + + F D
Sbjct: 62 GSACIYSKKVEYLYSLVYQALDFISNKKRVQQPTSVGADGEDKDATFAHRNDEEEFLSLD 121
Query: 137 DV 138
D+
Sbjct: 122 DI 123
>sp|Q6IBW4|CNDH2_HUMAN Condensin-2 complex subunit H2 OS=Homo sapiens GN=NCAPH2 PE=1 SV=1
Length = 605
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 14/135 (10%)
Query: 20 DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQG 77
+ RF +QP R+L NWEVD+A +L +YL ++ Q+ S ++NF EAALL+QG
Sbjct: 5 EARFAHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQG 62
Query: 78 SVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAG---EENDFFWG 134
S VYS+KVEYLY+LV L+FIS K + Q+ VQ + + A +G E + F
Sbjct: 63 SACVYSKKVEYLYSLVYQALDFISGKRRAKQLSS--VQEDRANGVASSGVPQEAENEFLS 120
Query: 135 FDDVP-----VEVKN 144
DD P V++KN
Sbjct: 121 LDDFPDSRTNVDLKN 135
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 452 EPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQV 511
+P EA + + + E+L R +++ +A + ++TEL+ R+ W+ ++ L EQ
Sbjct: 451 DPREAADLDAVPMSLSYEELVRRNVELFIATSQKFVQETELSQRIRDWEDTVQPLLQEQE 510
Query: 512 TYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYG 546
+ PF + L S F + C +LV G
Sbjct: 511 QH--VPFDIHTYGDQLVSRFPQLNEWCPFAELVAG 543
>sp|Q28GV1|CNDH2_XENTR Condensin-2 complex subunit H2 OS=Xenopus tropicalis GN=ncaph2 PE=2
SV=1
Length = 624
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
Query: 19 SDVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQ 76
++ RFT +QP R+L NWEVD+A +L +YL ++ Q+ S ++NFAEAALL+Q
Sbjct: 4 AESRFTHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDGGKTTMNFAEAALLIQ 61
Query: 77 GSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQ 108
GS +YS+KVEYLY+LV L+FIS K + Q
Sbjct: 62 GSACIYSKKVEYLYSLVYQALDFISNKKRDQQ 93
>sp|Q8BSP2|CNDH2_MOUSE Condensin-2 complex subunit H2 OS=Mus musculus GN=Ncaph2 PE=1 SV=1
Length = 607
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 77/137 (56%), Gaps = 18/137 (13%)
Query: 20 DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQG 77
+VRF +QP R+L NWEVD+A +L +YL ++ Q+ S ++NF EAALL+QG
Sbjct: 5 EVRFAHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQG 62
Query: 78 SVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEEN-----DFF 132
S VYS+KVEYLY+LV L+FIS K + Q+ +E GS E + F
Sbjct: 63 SACVYSKKVEYLYSLVYQALDFISGKRRAKQLSLV----QEDGSKKTVNSETPCETENEF 118
Query: 133 WGFDDVP-----VEVKN 144
DD P V++KN
Sbjct: 119 LSLDDFPDSRANVDLKN 135
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 439 LQHDKHDDGPAPFEPNEAFEHGSQDSHANL--EDLCRSHLDALLANIAETEKQTELAARV 496
L+ +++ + PA P EA + ++ +L E+L R +++ +A + ++TEL+ R+
Sbjct: 438 LEPEEYVEEPAGVMPEEAADLDAEAMPESLRYEELVRRNVELFIATSQKFIQETELSQRI 497
Query: 497 SSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYG 546
W+ I+ L EQ + PF L+S F + C +LV G
Sbjct: 498 RDWEDTIQPLLQEQEQH--VPFDIHIYGDQLASRFPQLNEWCPFSELVAG 545
>sp|Q3SZL8|CNDH2_BOVIN Condensin-2 complex subunit H2 OS=Bos taurus GN=NCAPH2 PE=2 SV=1
Length = 622
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 27 PERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKV 86
P R+L NWEVD+A +L +YL ++ Q+ S ++NF EAALL+QGS VYS+KV
Sbjct: 14 PIRDLTRNWEVDVAAQLGEYLEEL--DQICISFDKGKTTMNFIEAALLIQGSACVYSKKV 71
Query: 87 EYLYNLVLHTLEFISQKSQQDQIEGTP 113
EYLY+LV L+FIS K Q Q+ TP
Sbjct: 72 EYLYSLVYQALDFISGKKQAKQLSSTP 98
>sp|Q5RH01|CNDH2_DANRE Condensin-2 complex subunit H2 OS=Danio rerio GN=ncaph2 PE=2 SV=1
Length = 592
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 25 VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSR 84
+QP R+L NW++DLA +L +YL ++ Q+T S +NFAEAALL+QGS +Y R
Sbjct: 12 LQPLRDLTKNWDIDLASQLGEYLEEL--DQMTISFDGGKTMMNFAEAALLIQGSTCIYGR 69
Query: 85 KVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEEND 130
KVE L+ LV TL++IS K+++ +G+ ++ + A +G E D
Sbjct: 70 KVELLHTLVFQTLDYISNKNKKRDKQGS--SSDGNQEQAPSGSEGD 113
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 420 IGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHAN---LEDLCRSHL 476
I HPD D D Y DE +HD D P E + E QD H + EDL + +
Sbjct: 408 IRHPDADGDD--YSDE----EHDNLADDLEPAEHLDDQEQIFQDLHMSRMSYEDLVKKSV 461
Query: 477 DALLANIAETEKQTELAARVSSWKQKIENNLDEQ 510
D L N + ++T L+ RV W+ I +L Q
Sbjct: 462 DLFLVNSQKYAQETALSRRVKDWEDSINPHLAAQ 495
>sp|Q4V8I2|CNDH2_RAT Condensin-2 complex subunit H2 OS=Rattus norvegicus GN=Ncaph2 PE=2
SV=1
Length = 554
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 10/87 (11%)
Query: 66 VNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVA 125
+NF EAALL+QGS VYS+KVEYLY+LV L+FIS K + Q+ + VQ + S +
Sbjct: 1 MNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQL--SLVQEDGSNRAVNS 58
Query: 126 G---EENDFFWGFDDVP-----VEVKN 144
G E D F DD P V++KN
Sbjct: 59 GTPCETEDEFLSLDDFPDSRANVDLKN 85
>sp|P34341|KLE2_CAEEL Kleisin, abnormal closure, protein 2 OS=Caenorhabditis elegans
GN=kle-2 PE=4 SV=2
Length = 821
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 18 GSDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISV----NFAEAAL 73
+D+ + V P ++L N+ +D+ K L YL I +D+ + +F A
Sbjct: 11 STDLAWLVTPAKDLVENFSIDVLKALAGYLEVIRQESEDTDNQVDAATTYRLFDFQRACR 70
Query: 74 LVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFW 133
++QGS VY RKV+++Y L + ++ + K Q D +GS AG +F
Sbjct: 71 IIQGSCAVYGRKVDHVYELTISVVDLVENKGQDDG---------NTGSRRGAGRRKNFNL 121
Query: 134 G 134
G
Sbjct: 122 G 122
>sp|Q08296|PPOF_SOLLC Polyphenol oxidase F, chloroplastic OS=Solanum lycopersicum PE=3
SV=1
Length = 585
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 324 PFRKVKTFRRNG---VKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQP 380
P+R K RR+ V +A +S +FPLAKL IS LT A + +E+ Q
Sbjct: 424 PWRNFKPIRRSSSGKVNTASIAPVSKVFPLAKLDRAISFSLTR--PASSRTTQEKNEQQE 481
Query: 381 PSLYEKLRQSLADEGHETFDAFAN 404
+ K+ + D + FD F N
Sbjct: 482 ILTFNKM--AYDDTKYVRFDVFLN 503
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 OS=Homo sapiens GN=RB1CC1 PE=1
SV=3
Length = 1594
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 468 LEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTY-CFTPFYPESSYIS 526
L DLC SH + L+ + K ++ + ++ KQ++ NNL ++ + CF + +
Sbjct: 409 LPDLCLSHANQLMIMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEK 468
Query: 527 LSSTFNFITFVCLSFKLVYGLLIV 550
L + + + K+V L V
Sbjct: 469 LQALLRLVIELLERVKIVEALSTV 492
>sp|Q87KN9|BTUB_VIBPA Vitamin B12 transporter BtuB OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=btuB PE=3 SV=1
Length = 624
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 17/67 (25%)
Query: 267 GFDVGPNPPVND-----------------NFGENYHGFDMDDNYSEPRDFDNSDDEDDPW 309
GF+V P P +ND NF +N+ G+ YS D+DNS + W
Sbjct: 201 GFNVKPLPGLNDGDEHGFETLNLKLGYQQNFSDNFSGYVGFSTYSNEYDYDNSSYGNPGW 260
Query: 310 KPLNPHE 316
++ HE
Sbjct: 261 GTVDKHE 267
>sp|Q9ESK9|RBCC1_MOUSE RB1-inducible coiled-coil protein 1 OS=Mus musculus GN=Rb1cc1 PE=1
SV=3
Length = 1588
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 468 LEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTY-CFTPFYPESSYIS 526
L DLC SH + L+ + K ++ + ++ KQ++ NNL ++ + CF + +
Sbjct: 408 LPDLCLSHANQLMIMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEK 467
Query: 527 LSSTFNFITFVCLSFKLVYGLLIV 550
L + + + ++V L V
Sbjct: 468 LQALLRLVIELLERVRIVEALSTV 491
>sp|Q08307|PPOE_SOLLC Polyphenol oxidase E, chloroplastic OS=Solanum lycopersicum PE=3
SV=1
Length = 587
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 324 PFRKVKTFRRNG---VKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQP 380
P+R K R++ V +A +S +FPLAKL IS +T A + +E+ +
Sbjct: 426 PWRNFKPIRKSSSGKVNTASIAPVSKVFPLAKLDRAISFSITR--PASSRTTQEKNEQEE 483
Query: 381 PSLYEKLRQSLADEGHETFDAFAN 404
+ K+ S D + FD F N
Sbjct: 484 ILTFNKI--SYDDRNYVRFDVFLN 505
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,888,108
Number of Sequences: 539616
Number of extensions: 11030141
Number of successful extensions: 26788
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 26650
Number of HSP's gapped (non-prelim): 109
length of query: 591
length of database: 191,569,459
effective HSP length: 123
effective length of query: 468
effective length of database: 125,196,691
effective search space: 58592051388
effective search space used: 58592051388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)