Query 007729
Match_columns 591
No_of_seqs 97 out of 99
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 14:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06278 DUF1032: Protein of u 100.0 3.5E-99 8E-104 820.9 32.5 445 66-574 1-528 (565)
2 KOG2359 Uncharacterized conser 100.0 6.9E-87 1.5E-91 706.2 20.9 521 24-563 16-562 (688)
3 KOG2359 Uncharacterized conser 99.9 3.6E-28 7.8E-33 259.8 11.7 436 64-574 121-681 (688)
4 PF04825 Rad21_Rec8_N: N termi 93.2 0.14 3E-06 46.5 4.8 42 64-105 49-90 (111)
5 PF05786 Cnd2: Condensin compl 92.7 0.18 4E-06 58.3 6.1 55 43-104 102-156 (725)
6 KOG1213 Sister chromatid cohes 82.0 1.6 3.5E-05 50.3 4.5 44 65-108 50-93 (614)
7 PF02616 ScpA_ScpB: ScpA/B pro 75.8 4.2 9.1E-05 40.6 4.8 57 523-584 182-239 (242)
8 KOG2328 Chromosome condensatio 73.2 3.8 8.2E-05 47.5 4.1 40 65-104 100-139 (702)
9 PF13040 DUF3901: Protein of u 34.0 73 0.0016 24.9 4.0 31 465-495 5-36 (40)
10 PF14000 Packaging_FI: DNA pac 24.0 52 0.0011 31.3 2.0 15 490-504 27-41 (125)
No 1
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=100.00 E-value=3.5e-99 Score=820.88 Aligned_cols=445 Identities=27% Similarity=0.369 Sum_probs=337.2
Q ss_pred ccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhccccccCCCCcccccCC--CCCcCCCCCCcccccCCCccccc
Q 007729 66 VNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESG--SHAVAGEENDFFWGFDDVPVEVK 143 (591)
Q Consensus 66 ~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~~~~~~~~s~~~~~~~--~~~~~~e~ed~f~~lDd~~~~~~ 143 (591)
|||||||||||||||||||||||||+||||+|+||++||++++. ++++.+|.+ ...++.+++++|++|||++.+ +
T Consensus 1 ~nFaEAalliQgsa~vYskKVeyly~lv~~~l~~l~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~ldd~~~~-~ 77 (565)
T PF06278_consen 1 MNFAEAALLIQGSACVYSKKVEYLYSLVYQALDFLSGKKRAKQN--SSSQEDGEDGDANSAPQEDEDDFLSLDDLPEE-R 77 (565)
T ss_pred CCHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccc--CCCCCcccccccccCcccccccccCcccCchh-h
Confidence 79999999999999999999999999999999999999988765 567776765 334677889999999999976 7
Q ss_pred ccccCCCCCC-CccccccCCCccceeccCcccccCCCCCcccchhhhcccc----cCCceeccCCCCccccccccCcccc
Q 007729 144 NCLDSPNGKD-TSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDL----YRDFILLDTYDSVAVDDFLEGDEVC 218 (591)
Q Consensus 144 ~~idl~~~~~-~~~~~~~~pP~~L~~~Egd~~~~~~e~~el~s~LLat~~~----~kDFrLlntc~~~a~~~Fll~~~~~ 218 (591)
.+||++.++. ..+.+++++||+|++++ +.++++.+|++.+|= ++||| ||||++|+.|+|||+
T Consensus 78 ~~i~l~~~~~~~~~~~~~~~p~~l~~~~--------~~ek~~~~l~s~~ge~lgsr~DFr-mNt~~~H~sGalLLd---- 144 (565)
T PF06278_consen 78 NNIDLKDDQQPKETLIVPLLPMALVPPE--------EFEKNNVPLYSRKGEVLGSRKDFR-MNTCTPHPSGALLLD---- 144 (565)
T ss_pred cccccccccccccccccccCchhhccch--------hhccccCcccccCCCccCCcccee-eeecccCCCcceeec----
Confidence 7999999865 67788999999999999 889999888443321 39999 999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCcCCCCC----CcccccccccCCCCCCCCCcccCCCC--------CCCCCCCC----CCCC
Q 007729 219 KGPNDVYRGSSTRKSFQSPTRRSGGT----AHKSSLAKNKDVNLPASPRVACGFDV--------GPNPPVND----NFGE 282 (591)
Q Consensus 219 ~~~~~~~r~ss~r~~~~sp~~~sg~~----~~~~~~~k~~~~~~~~~~~~~c~~~~--------g~~pp~~~----~~~~ 282 (591)
+++.++++..... .+..........++|. ++.|+-++ +++.+++. +.++
T Consensus 145 -------------~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~m~--vs~~~~P~~~l~~s~e~~e~~~~~g~~~dD~d 209 (565)
T PF06278_consen 145 -------------LSGKSPLDQFVPRPRPSSPQQKDIDQAENQPME--VSDCGSPVPVLNFSDEEDEDPAPNGGGDDDAD 209 (565)
T ss_pred -------------cccCccccccccccccCcccccccccccCCCcc--cccCCCCCccccccccccCCCCCCCCcccccc
Confidence 5555555542211 1111111112244455 55554222 12222211 1111
Q ss_pred CC-C-------CCCCCCC-C-------CCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc-
Q 007729 283 NY-H-------GFDMDDN-Y-------SEPR-------------DFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFR- 332 (591)
Q Consensus 283 ~~-~-------g~d~e~~-~-------~~p~-------------~~~~~~d~~DPWk~LDPHepg~l~~KPFKKgk~y~- 332 (591)
++ . +..++.. + ..++ .+...++++|||++||||++. ++|||||||||+
T Consensus 210 ~~~e~p~~~~~~~~~e~~e~~~~~~~~~~~r~~~lR~r~~~a~~~~~~~ke~~DPW~~LDP~~~~--~~kPfKkGk~y~v 287 (565)
T PF06278_consen 210 DGAELPEAEDPEIPLEPDEPREPQQSVSEPRRYQLRERVQPAPEPASRQKETPDPWQLLDPHDSL--EDKPFKKGKPYRV 287 (565)
T ss_pred cccccccccccCCCCCCCCCCccccccccchhcchhhcccCCCcccccccCCCCcccccCccccC--CccccccCCCCcC
Confidence 11 0 0111111 1 1111 234678899999999999988 899999999998
Q ss_pred -----------ccCCCCccccccccc----------ccccccCCCCchhHHHHHHHHHH-HHhhhhccCCchHHHHHHHH
Q 007729 333 -----------RNGVKSAKRISISTI----------FPLAKLRGTISPELTEIWEARHK-CFEEQRASQPPSLYEKLRQS 390 (591)
Q Consensus 333 -----------Rk~k~a~kl~~~~~~----------fp~~r~~Gptf~dle~i~~~~~~-q~e~~r~sq~~~l~EKLrr~ 390 (591)
||||++.|+++|++| .++.+++||+|+||+||||++++ |++++| |++|+
T Consensus 288 P~~~~~~~~~KRKrK~~~kLqd~~~~~~~~~~~~~~~~r~~~kgp~faDle~Ly~k~ik~rl~~~r---------kl~rr 358 (565)
T PF06278_consen 288 PPGLEEASGQKRKRKGPSKLQDFSSWFLAAYISHSDQRRSRRKGPTFADLEYLYWKEIKERLEAQR---------KLQRR 358 (565)
T ss_pred CcchhhccchhhhccccccCCCHHHHHHHHHhccCccccccccCCcccchHHHHHHHHHHHHHHHH---------HHHHH
Confidence 788888999999999 67778999999999999999998 889999 99888
Q ss_pred hhccCCCCcccc-------CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccCCCC
Q 007729 391 LADEGHETFDAF-------ANPG-CYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQ 462 (591)
Q Consensus 391 l~~~~~~~~~~f-------~~le-~~Ed~~~dgg~dDF~~~d~D~p~d~~~D~d~p~~~~e~~~g~~~~~~~da~~~~d~ 462 (591)
...+.|++.... .+.+ +.| .+|+++||.+++ +++++..+....+.. +.+.+ ...+
T Consensus 359 ~~~~~~l~~~~e~~~~~E~e~~eD~le---d~g~~dD~~d~e------~~~e~~~~~~~~e~~-----~~d~~---~~~~ 421 (565)
T PF06278_consen 359 NIAERLLPDAEEERWPLEDENDEDSLE---DDGDADDFLDPE------DDVEDPEGMDPEEDA-----IDDLE---AESM 421 (565)
T ss_pred HhhhhcCCchhhccCcccccccccccc---cccccccccccc------cccccccccCccccc-----ccccc---cccC
Confidence 887777754111 1112 223 367778888766 233211122222211 11122 2346
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCCCCcchhhhHhhhccccccceEehhh
Q 007729 463 DSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFK 542 (591)
Q Consensus 463 ~~~~SYEdLcR~hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~~~g~~~~f~~ 542 (591)
+.++|||||||+||++||+++++|++||+|++||++|++||+|+|+|||+| ++||||.||++||++|..+|++++|++
T Consensus 422 ~~~~syEdL~r~~v~~~~~~~~~~~~et~L~~rV~~W~~~i~P~L~e~e~r--~~FdIh~yg~~ii~~~~~~~~~~~f~~ 499 (565)
T PF06278_consen 422 PDQLSYEDLCRSHVEAFIASSQKYEQETELSKRVRDWEEKIEPILEEQEQR--PPFDIHDYGDRIIERFSEVGEKATFAD 499 (565)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHHHHHhhcCCeeeHHH
Confidence 678999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhcCCcceeeehhhHhhhHHHHHhcccceEEE
Q 007729 543 LVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLI 574 (591)
Q Consensus 543 Lv~G~~~~EVcR~F~~~tL~l~~~~~~~~~~~ 574 (591)
||.|+++||||||| ||+|||+ |.+||.|-
T Consensus 500 vv~~~~~~ev~R~f-la~LqLa--N~~nv~i~ 528 (565)
T PF06278_consen 500 VVEGKPPYEVCRYF-LASLQLA--NDGNVEIS 528 (565)
T ss_pred HhCCCChhHHHHHH-HHHHHHh--cCCCeeec
Confidence 99999999999999 6777665 99999864
No 2
>KOG2359 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.9e-87 Score=706.19 Aligned_cols=521 Identities=15% Similarity=0.104 Sum_probs=441.8
Q ss_pred ccccchhhhhchhhHHHHHHHHHHHHHhcccccccCCCCcccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhh
Q 007729 24 TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQK 103 (591)
Q Consensus 24 llqPirDl~~nW~iDia~~LeeYl~~i~~~~~~~~~~~~~~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~ 103 (591)
|+||-|||-.||+|||.+.|++||+.||+++|++++.++.+++||++||+|||||.+||||||||||+||..+++||+++
T Consensus 16 ~v~p~~dlv~n~~id~~~~l~~yl~~i~~~e~t~n~~d~~~~~~f~~a~~~~qgs~~vy~~kv~~~y~l~~~~~~~~~~~ 95 (688)
T KOG2359|consen 16 LVTPAKDLVENFSIDVLKALAGYLEVIRQSEDTDNQVDAATTYDFQRACRIIQGSCAVYGRKVDHVYELTISVVDLVENR 95 (688)
T ss_pred eccchHHHHhhchhhHHHHHHHHHHHHhhccccCccccccccccHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccCC-CCCcCCCCCCcccccCCCcccccccc------------cCCCCCCCccccccCCCccceecc
Q 007729 104 SQQDQIEGTPVQAEESG-SHAVAGEENDFFWGFDDVPVEVKNCL------------DSPNGKDTSLNLFVKPPANLVVLE 170 (591)
Q Consensus 104 ~~~~~~~~~s~~~~~~~-~~~~~~e~ed~f~~lDd~~~~~~~~i------------dl~~~~~~~~~~~~~pP~~L~~~E 170 (591)
|.|.|..++|. .+.++ ++.+.+++.+.||..++++.+-.+.. +-+.+..+..+.+..+|.++++.+
T Consensus 96 r~~~~~kg~~n-~~~a~~~~~~~e~~~~~~~~v~~~~~qisa~~~v~nie~~~s~~~~~~~~is~p~qf~~~~~~~~~~~ 174 (688)
T KOG2359|consen 96 RGAGRRKGSTN-YDLADIDSLKQEALANFEKTVKEEKKSIDAVRMVENAEVIESQYERKSCLVAKPTQFMFKLDEQILNA 174 (688)
T ss_pred cchhccCCCCC-ccchhhhHHHHHHHhhhHhHHHHHhhccccceehhhHHHHHHHHHHHhccccCchhhhcCchhhhhcC
Confidence 98888776554 45555 44455666788999999987644331 123555567788999999999999
Q ss_pred CcccccCCCCCcccchhhhcccccCCceeccCCCCccccccccCccccCCCCCCCCCCCCcccccCCCcCCCCCCccccc
Q 007729 171 GDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSL 250 (591)
Q Consensus 171 gd~~~~~~e~~el~s~LLat~~~~kDFrLlntc~~~a~~~Fll~~~~~~~~~~~~r~ss~r~~~~sp~~~sg~~~~~~~~ 250 (591)
++|+|+.|.+.+..++++++.++|+||.+.+ |++++++.||+.....+..|.+|+++|.+..|++-..+++|..+..+.
T Consensus 175 ~~~~d~~g~~~d~e~~~~~~~hl~~d~~~~d-c~~~~l~~fl~~~~~~~~~N~~h~~~s~~~~f~~~vp~~~~~~~~~~v 253 (688)
T KOG2359|consen 175 KSRPDVIGKVKDFEIKKSKVKHDQQILYSHD-CYRGNLDQFTLPGARWMPDNKEHEKISAYGPFKDVVPPPRWFIEQEAV 253 (688)
T ss_pred Cccccccccccccchhhhcchhhhhccchhh-hccccchhhccCccccCCCcccccccccccchhhccCCCCCCCcchhh
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007729 251 AKNKDVNLPASPRVACGFDV------GPNPPVNDNFGENYHGFDMDDNYSEPR-DFDNSDDEDDPWKPLNPHEPGNLKVK 323 (591)
Q Consensus 251 ~k~~~~~~~~~~~~~c~~~~------g~~pp~~~~~~~~~~g~d~e~~~~~p~-~~~~~~d~~DPWk~LDPHepg~l~~K 323 (591)
+++++.+...+ +..|.-++ |++|+.+.++ +++|+|..++..-. -++-.-+.++||++|+|++|+++++|
T Consensus 254 ~~nq~~~~~~~-~~~~~~p~~~l~dsGsqP~~~~~~---~~~~~~~ne~~~~~~fs~~~a~~~~p~~~l~~~ep~~s~vk 329 (688)
T KOG2359|consen 254 RQNQEIQSRAT-SRAITIAAKTLRDSGSQPTRLQPF---VERHRQSNHLNDFLSFVEGRVNKNRPSTHLTTDEPNTSRRP 329 (688)
T ss_pred ccCcccccccc-ceeecCccccccccCCCCCCCCCC---CccchhhhhhhccccccccccccCCcccCCCCCCCCcccCC
Confidence 99999666554 33333232 8888776544 44566666533332 24444566799999999999999999
Q ss_pred CCcccccccccCCCCcccccccccccccccCCCCchhHHHHHHHHHHHHhhhhccCCchHHHHHHHHhhccCCCCcc-cc
Q 007729 324 PFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLADEGHETFD-AF 402 (591)
Q Consensus 324 PFKKgk~y~Rk~k~a~kl~~~~~~fp~~r~~Gptf~dle~i~~~~~~q~e~~r~sq~~~l~EKLrr~l~~~~~~~~~-~f 402 (591)
||++++--..-+.+.. .-+....|+++|++||+.-++-.||..|-+....+.++|-.++|+|++..|+..+|.+-. ..
T Consensus 330 ~~~~~~~d~~~g~~~~-~d~~~~~~~l~r~~e~~~~~~~~iw~~~~~a~~d~~~s~~~~~~~k~~eml~~~~~~~~k~n~ 408 (688)
T KOG2359|consen 330 DYAPMDFDDDFGGGGD-DDDDDYIRNLSRRDEKRADKNHIIWYTGDLPVVSKPVKKITKFQPKPAEMLARKQRREEKINK 408 (688)
T ss_pred CCcccccccccCCCCC-ccccCCcccCCCCcccccchhhhhhhhcCCccccchhhhhccccCCcHHHHHhhcccchhhhh
Confidence 9999988877776554 344567899999999999999999987776566667888899999999999999998531 11
Q ss_pred CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccCCCCCccccHHHHHHHHHHHH
Q 007729 403 ANPG---CYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDAL 479 (591)
Q Consensus 403 ~~le---~~Ed~~~dgg~dDF~~~d~D~p~d~~~D~d~p~~~~e~~~g~~~~~~~da~~~~d~~~~~SYEdLcR~hve~~ 479 (591)
..++ ..+| ...||++.+++.-++.++|.++..... .++++ ++.+++.++....++|||+|||+|+++|
T Consensus 409 ~~~d~~~~~hd-----~~~d~~~~~~~~~~~p~~D~~ie~~~~---~~~ae-~~r~~~e~~a~~~~~S~E~L~R~~~~~~ 479 (688)
T KOG2359|consen 409 SRRDEFMETHD-----YLQDYYYWRSAARINPIKDWKIESLRT---AILAE-KKRRIKEKTAKIREASIENLQRKRTARV 479 (688)
T ss_pred hhhhhhhhhcc-----chhhhccccchhhhcCcchhhcccccc---ccccc-CcchhhhcccchHHHHHHHHHHHHHHHH
Confidence 1111 3333 557888888888888888877544422 24555 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCCCCcchhhhHhhhcccccc--ceEehhhhhcCCcceeeehhhH
Q 007729 480 LANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFIT--FVCLSFKLVYGLLIVEFLIFYR 557 (591)
Q Consensus 480 ~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~~~g--~~~~f~~Lv~G~~~~EVcR~F~ 557 (591)
||++||++++|+|++||++|+++|+|.|+|||.| +|||||+||++|+.+|...+ .||+|.+||+||++|||||.|
T Consensus 480 iA~~qK~~~~T~Ls~Ri~~W~d~V~~~L~EQE~H--~PFDI~~YGD~~i~r~~~e~~~~~~~F~eL~a~Q~~fEV~Ra~- 556 (688)
T KOG2359|consen 480 IAVEQKETEDTPLSNRGAEWDDVVDEDLAEQEEH--SPFDIGFYGDEEDVRPRGERPPMAPNFLELDALQTDFEVPRAE- 556 (688)
T ss_pred hhhhhhhhhcchHhhhhchHHhhhhHhHHHhhhc--CCCccccccchhhccccccCCCCCCcHHHHhcCCcccccchhh-
Confidence 9999999999999999999999999999999999 99999999999999999988 899999999999999999999
Q ss_pred hhhHHH
Q 007729 558 IRTLHL 563 (591)
Q Consensus 558 ~~tL~l 563 (591)
+|.|||
T Consensus 557 ~A~LQL 562 (688)
T KOG2359|consen 557 YAPLQL 562 (688)
T ss_pred hcceee
Confidence 466665
No 3
>KOG2359 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3.6e-28 Score=259.80 Aligned_cols=436 Identities=10% Similarity=-0.030 Sum_probs=276.3
Q ss_pred ccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhccccccCCCCcccccCCCCCcCCCCCCcccccCCCccccc
Q 007729 64 ISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVK 143 (591)
Q Consensus 64 ~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~e~ed~f~~lDd~~~~~~ 143 (591)
..|||.+++++||||||+|++||||+|+++|+.++|++.++|..++ +.++ ...++++.+..|.++|+.+.. +
T Consensus 121 ~~~~~~v~~~~~qisa~~~v~nie~~~s~~~~~~~~is~p~qf~~~--~~~~-----~~~~~~~~d~~g~~~d~e~~~-~ 192 (688)
T KOG2359|consen 121 ANFEKTVKEEKKSIDAVRMVENAEVIESQYERKSCLVAKPTQFMFK--LDEQ-----ILNAKSRPDVIGKVKDFEIKK-S 192 (688)
T ss_pred hhhHhHHHHHhhccccceehhhHHHHHHHHHHHhccccCchhhhcC--chhh-----hhcCCccccccccccccchhh-h
Confidence 4799999999999999999999999999999999999999998886 2122 344566677889999999987 7
Q ss_pred ccccCCCCCCCccccccCCCccceeccCcccccCCCCCcccchhhhcccccCCceeccCCCCccccccccCccccCCCCC
Q 007729 144 NCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPND 223 (591)
Q Consensus 144 ~~idl~~~~~~~~~~~~~pP~~L~~~Egd~~~~~~e~~el~s~LLat~~~~kDFrLlntc~~~a~~~Fll~~~~~~~~~~ 223 (591)
.+.++..+.-..-.+++..||+|++.. .+++.+ ++|.+++++.|++. .....-.
T Consensus 193 ~~~hl~~d~~~~dc~~~~l~~fl~~~~--------~~~~~N----------------~~h~~~s~~~~f~~--~vp~~~~ 246 (688)
T KOG2359|consen 193 KVKHDQQILYSHDCYRGNLDQFTLPGA--------RWMPDN----------------KEHEKISAYGPFKD--VVPPPRW 246 (688)
T ss_pred cchhhhhccchhhhccccchhhccCcc--------ccCCCc----------------ccccccccccchhh--ccCCCCC
Confidence 788888887633388999999999776 443333 38999999999887 2222223
Q ss_pred CCCCCCCcc--cccCCCcCCCCCCcccccccccCCCCCCCCCcccCCCC----CCCCCCCCCCCCCCCC-CCCCCC--CC
Q 007729 224 VYRGSSTRK--SFQSPTRRSGGTAHKSSLAKNKDVNLPASPRVACGFDV----GPNPPVNDNFGENYHG-FDMDDN--YS 294 (591)
Q Consensus 224 ~~r~ss~r~--~~~sp~~~sg~~~~~~~~~k~~~~~~~~~~~~~c~~~~----g~~pp~~~~~~~~~~g-~d~e~~--~~ 294 (591)
+-|+++.++ .-.+|+..+-+++.-++.+-. +-+|...+--+-++.+ |..+ +|. ++ .+.+++ +.
T Consensus 247 ~~~~~~v~~nq~~~~~~~~~~~~~p~~~l~ds-GsqP~~~~~~~~~~~~~ne~~~~~----~fs---~~~a~~~~p~~~l 318 (688)
T KOG2359|consen 247 FIEQEAVRQNQEIQSRATSRAITIAAKTLRDS-GSQPTRLQPFVERHRQSNHLNDFL----SFV---EGRVNKNRPSTHL 318 (688)
T ss_pred CCcchhhccCccccccccceeecCcccccccc-CCCCCCCCCCCccchhhhhhhccc----ccc---ccccccCCcccCC
Confidence 334444332 223333333333333333222 2333332111100111 1111 110 01 223333 22
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc---cc--CCCCccccccccc--------ccccccCCCCchhH
Q 007729 295 EPRDFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFR---RN--GVKSAKRISISTI--------FPLAKLRGTISPEL 361 (591)
Q Consensus 295 ~p~~~~~~~d~~DPWk~LDPHepg~l~~KPFKKgk~y~---Rk--~k~a~kl~~~~~~--------fp~~r~~Gptf~dl 361 (591)
.+..+....-.++||..+||+..+ .++||+++++|+ +. +.+..+++.+|.| ...-|+.||.|.+|
T Consensus 319 ~~~ep~~s~vk~~~~~~~d~~~g~--~~~~d~~~~~~~l~r~~e~~~~~~~~iw~~~~~a~~d~~~s~~~~~~~k~~eml 396 (688)
T KOG2359|consen 319 TTDEPNTSRRPDYAPMDFDDDFGG--GGDDDDDDYIRNLSRRDEKRADKNHIIWYTGDLPVVSKPVKKITKFQPKPAEML 396 (688)
T ss_pred CCCCCCcccCCCCcccccccccCC--CCCccccCCcccCCCCcccccchhhhhhhhcCCccccchhhhhccccCCcHHHH
Confidence 222344455556999999999999 899999999997 22 3455688889998 55667889999999
Q ss_pred HHHHHHHHH-HHhhhhccCCchHHHHHHHHhhccCCCCccccCCCC-CCCCCCCCCCCCCCCCCCCCCC--CC-------
Q 007729 362 TEIWEARHK-CFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPG-CYEDKGYDSGDPDIGHPDFDMP--DG------- 430 (591)
Q Consensus 362 e~i~~~~~~-q~e~~r~sq~~~l~EKLrr~l~~~~~~~~~~f~~le-~~Ed~~~dgg~dDF~~~d~D~p--~d------- 430 (591)
+..||.|.+ +.+..+ +++++... ++.|+..+ +.++ .+..|+|.++..+|. ++
T Consensus 397 ~~~~~~~~k~n~~~~d---------~~~~~hd~-----~~d~~~~~~~~~~---~p~~D~~ie~~~~~~~ae~~r~~~e~ 459 (688)
T KOG2359|consen 397 ARKQRREEKINKSRRD---------EFMETHDY-----LQDYYYWRSAARI---NPIKDWKIESLRTAILAEKKRRIKEK 459 (688)
T ss_pred Hhhcccchhhhhhhhh---------hhhhhccc-----hhhhccccchhhh---cCcchhhcccccccccccCcchhhhc
Confidence 999999998 666666 77777541 13344444 3333 455565554331111 00
Q ss_pred ------------------------------------------------------------CCCCCCCcccCCCCC-----
Q 007729 431 ------------------------------------------------------------MYMDEDVPLQHDKHD----- 445 (591)
Q Consensus 431 ------------------------------------------------------------~~~D~d~p~~~~e~~----- 445 (591)
.|+|..+.-.+.+..
T Consensus 460 ~a~~~~~S~E~L~R~~~~~~iA~~qK~~~~T~Ls~Ri~~W~d~V~~~L~EQE~H~PFDI~~YGD~~i~r~~~e~~~~~~~ 539 (688)
T KOG2359|consen 460 TAKIREASIENLQRKRTARVIAVEQKETEDTPLSNRGAEWDDVVDEDLAEQEEHSPFDIGFYGDEEDVRPRGERPPMAPN 539 (688)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhhhhcchHhhhhchHHhhhhHhHHHhhhcCCCccccccchhhccccccCCCCCCc
Confidence 111111111111110
Q ss_pred -----CCCCCCCCCccc------cC-CC----CCccccHHHHHHHHHHHH-----HHHHHHHHH------HHHHHHHHHH
Q 007729 446 -----DGPAPFEPNEAF------EH-GS----QDSHANLEDLCRSHLDAL-----LANIAETEK------QTELAARVSS 498 (591)
Q Consensus 446 -----~g~~~~~~~da~------~~-~d----~~~~~SYEdLcR~hve~~-----~a~~~~~~~------eTeLs~RV~~ 498 (591)
.|-..|++--+| +| ++ ++..++-+=+|...|+-| ++.-++-+. ...+...|..
T Consensus 540 F~eL~a~Q~~fEV~Ra~~A~LQL~N~~dVel~~~~n~~~~P~l~~AV~~~S~RLL~~~~~~k~~~~~~~P~~~~~~~i~k 619 (688)
T KOG2359|consen 540 FLELDALQTDFEVPRAEYAPLQLENIDDVELNSVINLPALPLLKKAVENRSDRLLMAYEMAKAYEDVDVPVSTLQEHVDK 619 (688)
T ss_pred HHHHhcCCcccccchhhhcceeeccCCceeecccCCCccchhHHHhhcchhHHHHHHHHHHHhhcccccchhcccccccc
Confidence 111122221111 11 11 122233466777666543 222222221 3456667999
Q ss_pred HHHhhhhhhhhhhhcCCCCCCcchhhhHhhhccccccceEehhhhhcCCcceeeehhhHhhhHHHHHhcccceEEE
Q 007729 499 WKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLI 574 (591)
Q Consensus 499 We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~~~g~~~~f~~Lv~G~~~~EVcR~F~~~tL~l~~~~~~~~~~~ 574 (591)
|+.+++|+|++.++- ++.|..|+-+|..++.-|..++...+|..+ ||| |+|+||-++|||+|
T Consensus 620 ~~s~~~p~~~~~~t~----~~~~~~~~~~~~~~~i~g~~~r~~~~~~~r------r~~----~s~~~~~v~~v~~~ 681 (688)
T KOG2359|consen 620 WHSRMEPILEEGETE----YDVHAVGRAVIGQYDIEGGTKRLLDLVMDR------RYF----LSCLFMCVGNVMVS 681 (688)
T ss_pred cccccCCCcccCCch----hhhhhhceeeeeeeeecCcceecchhhhhh------hhc----chhhhhhhhhhhhh
Confidence 999999999998866 999999999999999999999999998875 789 99999999999998
No 4
>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding
Probab=93.23 E-value=0.14 Score=46.48 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=37.9
Q ss_pred ccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhcc
Q 007729 64 ISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQ 105 (591)
Q Consensus 64 ~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~ 105 (591)
..+.+.-.+.|+-|-+-||+|||+|||+=+-.++.-|....+
T Consensus 49 ~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~~~~~l~~~~~ 90 (111)
T PF04825_consen 49 NPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNELLSKLKRAFR 90 (111)
T ss_pred cCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999999999888887777665
No 5
>PF05786 Cnd2: Condensin complex subunit 2; InterPro: IPR022816 This entry represents eukaryotic condensin complex subunit 2 proteins. Included in this group are several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16, resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded, but sister chromatids remain connected, resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase [].
Probab=92.74 E-value=0.18 Score=58.26 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=45.1
Q ss_pred HHHHHHHHhcccccccCCCCcccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhc
Q 007729 43 LEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKS 104 (591)
Q Consensus 43 LeeYl~~i~~~~~~~~~~~~~~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~ 104 (591)
|=+|+.+|- ...+ ...+||.-|+-.|-||+-|||=+|+-+|.=+|++|.-|.+++
T Consensus 102 lID~~~~~~----~~~~---~~~~nFq~As~tLd~~~KIy~~RVDsv~~~t~k~l~~l~~~~ 156 (725)
T PF05786_consen 102 LIDYFHDLI----DKKD---GDMINFQKASCTLDASVKIYSSRVDSVHTETYKLLSGLARSD 156 (725)
T ss_pred HHHHHHHHH----hccc---cccchHHHhhhheeeeeeEEeeeehHHHHHHHHHHHhccccc
Confidence 567777662 2222 257999999999999999999999999999999999997655
No 6
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.96 E-value=1.6 Score=50.33 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=34.7
Q ss_pred cccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhccccc
Q 007729 65 SVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQ 108 (591)
Q Consensus 65 ~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~~~~ 108 (591)
.|--.=-+.|+.|=+-||||||.|||+=+-.++--|...=+..+
T Consensus 50 ~lALRtSghLLlGVVRIYSrK~~YLl~Dcneal~kIk~afr~~~ 93 (614)
T KOG1213|consen 50 PLALRTSGHLLLGVVRIYSRKVKYLLDDCNEALLKIKMAFRSGQ 93 (614)
T ss_pred ceehhhhcccceeeEEeehhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 34445567899999999999999999999888877766655444
No 7
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes [].
Probab=75.81 E-value=4.2 Score=40.62 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=43.5
Q ss_pred hhhHhhhccccccceEehhhhhcCCcceeeehhhHhhhHHHHHh-cccceEEEEEecccceee
Q 007729 523 SYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFM-NMEKVLLISYHLKETMEI 584 (591)
Q Consensus 523 yG~~Iv~~f~~~g~~~~f~~Lv~G~~~~EVcR~F~~~tL~l~~~-~~~~~~~~~~~~~~~~~~ 584 (591)
.|++|+..+.. +.+++|.+|+.+....+|--.| |.+++| +.|.|.+.--.+=|.+.|
T Consensus 182 ~~~~l~~~L~~-~~~~~f~~l~~~~~r~~~V~tF----LAlLeL~k~~~i~i~Q~e~fgdI~I 239 (242)
T PF02616_consen 182 RLRELLDKLSK-KGWVSFSELFEEPSRSEVVVTF----LALLELVKQGKIEIEQEEPFGDIYI 239 (242)
T ss_pred hHHHHHHhhcc-CCceeHHHHcCcCCcCeeHHHH----HHHHHHhhcCcEEEEEcCCCCceEE
Confidence 34444445533 4599999999999899999999 888888 999998876666666655
No 8
>KOG2328 consensus Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.21 E-value=3.8 Score=47.55 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=37.5
Q ss_pred cccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhc
Q 007729 65 SVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKS 104 (591)
Q Consensus 65 ~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~ 104 (591)
.+||--|+--+-|++-|||-.|+-+|.=+|++|.-|++..
T Consensus 100 ~iNFqkAs~TLdacvKIYs~RVDSV~tea~rlL~GL~~~g 139 (702)
T KOG2328|consen 100 NINFQKASCTLDACVKIYSSRVDSVHTEAMRLLGGLGANG 139 (702)
T ss_pred CcchhhhccccccceeeeeeehhHHHHHHHHHhhcccccc
Confidence 4999999999999999999999999999999999999754
No 9
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=34.02 E-value=73 Score=24.93 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 007729 465 HANLEDLCRSHLDALLANIAETEK-QTELAAR 495 (591)
Q Consensus 465 ~~SYEdLcR~hve~~~a~~~~~~~-eTeLs~R 495 (591)
..||++||+.|-.+++.+-..-++ |-.+.+|
T Consensus 5 ~~sFeeLV~eNK~ell~d~~~me~Ieerie~k 36 (40)
T PF13040_consen 5 KKSFEELVRENKQELLNDKEAMEKIEERIEEK 36 (40)
T ss_pred ccCHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 379999999999999987665554 4444433
No 10
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=24.03 E-value=52 Score=31.33 Aligned_cols=15 Identities=33% Similarity=0.942 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhh
Q 007729 490 TELAARVSSWKQKIE 504 (591)
Q Consensus 490 TeLs~RV~~We~kI~ 504 (591)
.||++||.+||+-+.
T Consensus 27 AeiaqRVAEwEEEl~ 41 (125)
T PF14000_consen 27 AEIAQRVAEWEEELD 41 (125)
T ss_pred HHHHHHHHHHHHHHh
Confidence 689999999999887
Done!