Query 007729
Match_columns 591
No_of_seqs 97 out of 99
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jo8_A Serine/threonine-protei 20.3 2.7E+02 0.0092 21.9 6.2 41 465-511 9-49 (51)
2 4g9j_C Synthetic peptide, seri 15.5 55 0.0019 22.2 1.1 15 63-77 11-25 (26)
3 1hji_B NUN-protein; bacterioph 14.0 90 0.0031 21.2 1.8 17 493-509 9-25 (26)
4 2itb_A TRNA-(MS(2)IO(6)A)-hydr 10.3 2.9E+02 0.0098 27.2 4.8 52 468-524 145-199 (206)
5 1y66_A Engrailed homeodomain; 6.9 8.3E+02 0.028 18.7 6.0 40 468-513 12-51 (52)
6 3dvk_B Voltage-dependent R-typ 4.4 2.6E+02 0.0088 18.8 0.8 6 71-76 8-13 (23)
7 3dve_B Voltage-dependent N-typ 4.3 2.7E+02 0.0092 18.7 0.8 6 71-76 7-12 (23)
8 2eqs_A ATP-dependent RNA helic 4.3 3.9E+02 0.013 22.3 2.1 18 303-320 85-102 (103)
9 3u9j_A F-BOX/LRR-repeat protei 4.3 5.4E+02 0.018 24.2 3.1 25 489-513 109-133 (160)
10 1esx_A VPR protein; helix, amp 4.2 6.9E+02 0.023 21.8 3.6 53 498-566 17-70 (96)
No 1
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.28 E-value=2.7e+02 Score=21.90 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=25.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007729 465 HANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQV 511 (591)
Q Consensus 465 ~~SYEdLcR~hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE 511 (591)
.+|||+|.++= .+-..+-|.|+..-=.....|=+|+|+.-+
T Consensus 9 ~ls~eEL~~rl------~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 9 SWTVEDLQKRL------LALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp GSCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHH------HHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 48999998763 223333445555544556777888887654
No 2
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=15.48 E-value=55 Score=22.19 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=11.9
Q ss_pred cccccHHHHHHHhhc
Q 007729 63 SISVNFAEAALLVQG 77 (591)
Q Consensus 63 ~~~~NFaEAAlLiQg 77 (591)
+..+.|||||-+|..
T Consensus 11 narvtfaeaaeii~~ 25 (26)
T 4g9j_C 11 NARVTFAEAAEIIXX 25 (26)
T ss_pred cceeeHHHhhhHhhc
Confidence 357999999988853
No 3
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=13.96 E-value=90 Score=21.16 Aligned_cols=17 Identities=24% Similarity=0.683 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhhhhh
Q 007729 493 AARVSSWKQKIENNLDE 509 (591)
Q Consensus 493 s~RV~~We~kI~P~Lee 509 (591)
.+||..|+.+|.=.|.+
T Consensus 9 rrriarwekriayalkn 25 (26)
T 1hji_B 9 RRRIARWEKRIAYALKN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46899999999877653
No 4
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=10.33 E-value=2.9e+02 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=43.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCCCCcchhh
Q 007729 468 LEDLCRS---HLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSY 524 (591)
Q Consensus 468 YEdLcR~---hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~~~~~FDIh~yG 524 (591)
|..|.++ |-..|+.=+++|..+...++||..|-+.=.-++..... .|.||+ |
T Consensus 145 Y~~Ll~SEArHy~~yl~LA~~y~~~~~v~~R~~~l~~~Eaeli~~~~~----~~r~Hs-g 199 (206)
T 2itb_A 145 YHGLLKSEARHYQGYLKLAHNYGDEADIARCVELVRAAEMELIQSPDQ----ELRFHS-G 199 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHSEES----SCCTTC-C
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHcCCCC----cccccC-C
Confidence 8999885 99999999999999999999999998876666666554 478886 5
No 5
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=6.92 E-value=8.3e+02 Score=18.71 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 007729 468 LEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTY 513 (591)
Q Consensus 468 YEdLcR~hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~ 513 (591)
+.+.||+|-+---.+.-+|+ +++.-=+..|+....|-|+|
T Consensus 12 lkefvrrhqeitqetlheya------qklglnqqaieqffrefeqr 51 (52)
T 1y66_A 12 LKEFVRRHQEITQETLHEYA------QKLGLNQQAIEQFFREFEQR 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHhCccHHHHHHHHHHHHhc
Confidence 34455555544444444444 44444456677776666655
No 6
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=4.42 E-value=2.6e+02 Score=18.82 Aligned_cols=6 Identities=33% Similarity=0.694 Sum_probs=3.8
Q ss_pred HHHHhh
Q 007729 71 AALLVQ 76 (591)
Q Consensus 71 AAlLiQ 76 (591)
||||||
T Consensus 8 A~llI~ 13 (23)
T 3dvk_B 8 AAMMIM 13 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566665
No 7
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=4.27 E-value=2.7e+02 Score=18.74 Aligned_cols=6 Identities=50% Similarity=0.672 Sum_probs=3.3
Q ss_pred HHHHhh
Q 007729 71 AALLVQ 76 (591)
Q Consensus 71 AAlLiQ 76 (591)
||||||
T Consensus 7 AallI~ 12 (23)
T 3dve_B 7 AALMIF 12 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 8
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=4.26 E-value=3.9e+02 Score=22.29 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 007729 303 DDEDDPWKPLNPHEPGNL 320 (591)
Q Consensus 303 ~d~~DPWk~LDPHepg~l 320 (591)
.-.++||+.|||...++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~ 102 (103)
T 2eqs_A 85 DVDQETGEDLNPNRRRNL 102 (103)
T ss_dssp TBCTTTCCBCCSSCCCCC
T ss_pred ecccCCchhcCccccccc
Confidence 346799999999777653
No 9
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=4.26 E-value=5.4e+02 Score=24.20 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhc
Q 007729 489 QTELAARVSSWKQKIENNLDEQVTY 513 (591)
Q Consensus 489 eTeLs~RV~~We~kI~P~LeeqE~~ 513 (591)
.++|..|+.+|...+-|.+.|+|.-
T Consensus 109 ~~qLk~~l~~Ft~~flPhMkeEEEV 133 (160)
T 3u9j_A 109 AKQLKERLEAFTRDFLPHMKEEEEV 133 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccccHHHH
Confidence 6899999999999999999998864
No 10
>1esx_A VPR protein; helix, amphipatic, turn, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1m8l_A 1vpc_A 1x9v_A
Probab=4.24 E-value=6.9e+02 Score=21.84 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHHhhhhhhhhhhhcCCCCCCcchhhhHhhhccccccceEehhhhhcCCcceeeehhhHhhhHHH-HHh
Q 007729 498 SWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHL-IFM 566 (591)
Q Consensus 498 ~We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~~~g~~~~f~~Lv~G~~~~EVcR~F~~~tL~l-~~~ 566 (591)
+|-..+---|.++-.+-||.==||..|..|.+.+ |- .||-+++| |+.||- +|+
T Consensus 17 eW~le~LeELk~EAvrHFpr~~L~~lgq~iye~~--------------Gd-tw~g~~~~-irilQ~aLFi 70 (96)
T 1esx_A 17 DWTLELLEELKNEAVRHFPRIWLHSLGQHIYETY--------------GD-TWTGVEAL-IRILQQLLFI 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCSHHHHHHHHHHHS--------------SS-SSSHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------------cC-cHHHHHHH-HHHHHHHHHH
Confidence 4544333333333334488888999999999874 44 78888898 888875 454
Done!