Query 007729
Match_columns 591
No_of_seqs 97 out of 99
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 09:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007729.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007729hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta2 a.121.1.1 (A:83-205) H 23.5 33 0.0024 27.8 4.0 63 471-533 24-88 (123)
2 d2itba1 a.25.1.7 (A:3-201) Put 11.0 1.2E+02 0.009 27.2 4.8 52 467-522 141-195 (199)
3 d1jgca_ a.25.1.1 (A:) Bacterio 5.0 7E+02 0.051 19.6 7.0 48 466-513 81-130 (160)
4 d1dlca3 f.1.3.1 (A:61-289) del 4.4 3.1E+02 0.022 24.0 4.0 47 521-567 100-149 (229)
5 d1i5pa3 f.1.3.1 (A:1-263) delt 4.2 2E+02 0.014 26.2 2.5 10 557-566 179-188 (263)
6 d2o8ra1 a.7.15.1 (A:4-112) Pol 4.0 3.6E+02 0.026 20.8 3.8 14 497-510 95-108 (109)
7 d1oyia_ a.4.5.19 (A:) dsRNA-bi 3.9 90 0.0065 23.0 -0.1 15 70-84 37-51 (62)
8 d1dkza1 a.8.4.1 (A:507-603) Dn 3.7 5.2E+02 0.038 19.4 4.5 40 474-513 4-43 (97)
9 d1i5na_ a.24.10.3 (A:) Chemota 3.6 4.4E+02 0.032 20.2 4.0 16 37-52 60-75 (128)
10 d2esna1 a.4.5.37 (A:3-91) Prob 3.3 2E+02 0.015 21.5 1.4 41 489-532 34-74 (89)
No 1
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=23.52 E-value=33 Score=27.79 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc-CC-CCCCcchhhhHhhhcccc
Q 007729 471 LCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTY-CF-TPFYPESSYISLSSTFNF 533 (591)
Q Consensus 471 LcR~hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~-~~-~~FDIh~yG~~Iv~~f~~ 533 (591)
||+.++|-+......-+...-+.++...|.+.|..+|++.-+. .+ +..|.....+.|++.++.
T Consensus 24 ~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~~~vdp~~~A~~lva~idG 88 (123)
T d1rkta2 24 LAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATIAKFFLNMNDG 88 (123)
T ss_dssp SHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHHhH
Confidence 7889998888877777888999999999999999999775333 22 457888999999988764
No 2
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=11.00 E-value=1.2e+02 Score=27.18 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=40.7
Q ss_pred cHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCCCCcch
Q 007729 467 NLEDLCR---SHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPES 522 (591)
Q Consensus 467 SYEdLcR---~hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~~~~~FDIh~ 522 (591)
=|..|.+ +|-..|+.=+.+|..+....+|+..|-+.=.-+++..+. .|.+|+
T Consensus 141 FY~~L~~SEarH~~~yl~LA~~~~~~~~V~~Rl~~ll~~Eaeli~~~d~----~~R~HS 195 (199)
T d2itba1 141 FYHGLLKSEARHYQGYLKLAHNYGDEADIARCVELVRAAEMELIQSPDQ----ELRFHS 195 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHSEES----SCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHcCCCC----CCccCC
Confidence 3899987 599999999999988999999999987655555555543 367775
No 3
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=4.96 E-value=7e+02 Score=19.59 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhc
Q 007729 466 ANLEDLCRSHLDALLANIAETEKQTELAARVSSW--KQKIENNLDEQVTY 513 (591)
Q Consensus 466 ~SYEdLcR~hve~~~a~~~~~~~eTeLs~RV~~W--e~kI~P~LeeqE~~ 513 (591)
.|.+++++.-++.--..++.|.+-..++..+.+= .+-++.+|.+|+.|
T Consensus 81 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h 130 (160)
T d1jgca_ 81 EGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGH 130 (160)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888777766666665542 46788899999998
No 4
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=4.37 E-value=3.1e+02 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=24.4
Q ss_pred chhhhHhhhccccccceEehhhhhcCCcceeeeh---hhHhhhHHHHHhc
Q 007729 521 ESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLI---FYRIRTLHLIFMN 567 (591)
Q Consensus 521 h~yG~~Iv~~f~~~g~~~~f~~Lv~G~~~~EVcR---~F~~~tL~l~~~~ 567 (591)
......|.++|..+...+.-.-=..-.+.||+.= |=..|+|||+++.
T Consensus 100 ~~~~~~v~~~f~~~~~~f~~~l~~F~~~~ye~~lLp~YaqaAnLhL~LLr 149 (229)
T d1dlca3 100 PHSQGRIRELFSQAESHFRNSMPSFAISGYEVLFLTTYAQAANTHLFLLK 149 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGSCTTCTTTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHH
Confidence 3455567777666554221111111224566632 3346899999883
No 5
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]}
Probab=4.17 E-value=2e+02 Score=26.22 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=8.2
Q ss_pred HhhhHHHHHh
Q 007729 557 RIRTLHLIFM 566 (591)
Q Consensus 557 ~~~tL~l~~~ 566 (591)
-.|||||+++
T Consensus 179 qaAnLHLlLL 188 (263)
T d1i5pa3 179 QAANMHLSFI 188 (263)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3689999987
No 6
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.00 E-value=3.6e+02 Score=20.80 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=12.0
Q ss_pred HHHHHhhhhhhhhh
Q 007729 497 SSWKQKIENNLDEQ 510 (591)
Q Consensus 497 ~~We~kI~P~Leeq 510 (591)
+-|.+.|.|.|+++
T Consensus 95 ~~~~~~LlP~L~~~ 108 (109)
T d2o8ra1 95 RIFYDQILPTLEEH 108 (109)
T ss_dssp HHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45999999999875
No 7
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=3.94 E-value=90 Score=22.98 Aligned_cols=15 Identities=40% Similarity=0.366 Sum_probs=11.8
Q ss_pred HHHHHhhcceeeeeh
Q 007729 70 EAALLVQGSVQVYSR 84 (591)
Q Consensus 70 EAAlLiQgSa~VYsr 84 (591)
.|-.=+|-||+|||-
T Consensus 37 kalydlqrsamvy~s 51 (62)
T d1oyia_ 37 KALYDLQRSAMVYSS 51 (62)
T ss_dssp HHHHHHHHHTSSEEC
T ss_pred HHHHHHHHhhheecC
Confidence 355668999999984
No 8
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=3.74 E-value=5.2e+02 Score=19.38 Aligned_cols=40 Identities=3% Similarity=0.063 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 007729 474 SHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTY 513 (591)
Q Consensus 474 ~hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~ 513 (591)
.-|+.++..+.+|..+-...+..-+.+...+.++-.-++.
T Consensus 4 ~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~ 43 (97)
T d1dkza1 4 DEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQ 43 (97)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888887777777777777776666555
No 9
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=3.60 E-value=4.4e+02 Score=20.21 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhc
Q 007729 37 VDLAKKLEDYLLKICS 52 (591)
Q Consensus 37 iDia~~LeeYl~~i~~ 52 (591)
.++++.||+++..+..
T Consensus 60 ~~lah~lE~~l~~lr~ 75 (128)
T d1i5na_ 60 QETTHLMENLLDEARR 75 (128)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4789999999998874
No 10
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.30 E-value=2e+02 Score=21.52 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCCCCCcchhhhHhhhccc
Q 007729 489 QTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFN 532 (591)
Q Consensus 489 eTeLs~RV~~We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~ 532 (591)
++.++++|+.+|+.+.=-|=.-.. ..+.+...|..+...+.
T Consensus 34 q~avs~~l~~lE~~~g~~Lf~R~~---~~~~lT~~g~~l~~~~~ 74 (89)
T d2esna1 34 ASAFSHALGRLRQGLDDELFLRQG---NRMQPTQRAEHLAAAVA 74 (89)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEET---TEEEECHHHHHHHHHHH
T ss_pred CcHhhHHHHHHHhcCCceeEEECC---CceeECHHHHHHHHHHH
Confidence 789999999999999866655443 46778888888876543
Done!