BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007730
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 17/236 (7%)
Query: 338 ENKRNQSDKNVVEDENKMEFHSPKT----EKPHLSLAKQEHA------FAGALAGVFVSL 387
E R+ + V + +M F S + EHA AG+ G
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA 120
Query: 388 CLHPVDTVKTVIQS-----CHTEQKSIVYIGRSIVSERGLTGLYRGXXXXXXXXXXXXXV 442
P D VK Q+ +S V ++I E G+ GL++G
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 443 YAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS--RYHN 500
TY+ +K LL H T+ A T+ I +P + +K + + +YH+
Sbjct: 181 ELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHS 240
Query: 501 CWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQP 556
+ + +++ G + Y G+ R ++V F TYE LK+ ++ + + P
Sbjct: 241 AGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
Query: 472 GCASVATSFIFTPSERIKQQMQV------------GSRYHNCWNALVGIIKNGGLHSLYA 519
G A+ I P + K ++Q+ ++Y ++ +++ G SLY
Sbjct: 9 GTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYN 68
Query: 520 GWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPF 579
G A L R + + V+ Y+S+KQ K L+ G G+ A P
Sbjct: 69 GLVAGLQRQMSFASVRIGLYDSVKQFY---TKGSEHAGIGSRLLAGSTTGALAVAVAQPT 125
Query: 580 DVVKTRLQTQ 589
DVVK R Q Q
Sbjct: 126 DVVKVRFQAQ 135
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 84/238 (35%), Gaps = 29/238 (12%)
Query: 376 FAGA-LAGVFVSLCLHPVDTVKTVIQ-----------SCHTEQKSIVYIGRSIVSERGLT 423
F GA A L P+DT K +Q + + + ++ ++V G
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 424 GLYRGXXXXXXXXXXXXXVYAFTYESVKGALLP---HLPKEFHSLAHCTAGGCASVATSF 480
LY G V Y+SVK H LA T G A
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA---- 120
Query: 481 IFTPSERIKQQMQV------GSRYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIV 534
+ P++ +K + Q G RY + A I + G+ L+ G + RN +
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 535 KFYTYESLKQMMLPS-LKPGAQPNTIETLICGGVAGSTAALFTTPFDVVKTRLQTQVL 591
+ TY+ +K +L + L P + AG + +P DVVKTR L
Sbjct: 181 ELVTYDLIKDTLLKANLMTDDLPCHFTSAFG---AGFCTTVIASPVDVVKTRYMNSAL 235
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 465 LAHCTAGGCASVATSFIFTPSERIKQQMQVG---------SRYHNCWNALVGIIKNGGLH 515
L AGG A+ + P ER+K +QV +Y + +V I K G
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 516 SLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQ--PNTIETLICGGVAGSTAA 573
S + G A + R P + F + KQ+ L + Q L GG AG+T+
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 127
Query: 574 LFTTPFDVVKTRLQTQV 590
F P D +TRL V
Sbjct: 128 CFVYPLDFARTRLAADV 144
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 26/188 (13%)
Query: 377 AGALAGVFVSLC-LHPVDTVKTVIQS---CHTEQKSIVYIGR---SIVSERGLTGLYRGX 429
+G AG SLC ++P+D +T + + Q+ +G I GL GLY+G
Sbjct: 118 SGGAAGA-TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 430 XXXXXXXXXXXXVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIK 489
Y Y++ KG +LP PK H + + + P + ++
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKG-MLPD-PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234
Query: 490 QQMQVGSRYH----------NCWNALVGIIKNGGLHSLYAG-WGAVLCRNVPHSIVKFYT 538
++M + S +CW I K+ G + + G W VL R + + V
Sbjct: 235 RRMMMQSGRKGADIMYTGTVDCWRK---IAKDEGPKAFFKGAWSNVL-RGMGGAFV-LVL 289
Query: 539 YESLKQMM 546
Y+ +K+ +
Sbjct: 290 YDEIKKFV 297
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 161 STFWTFLRSGASLSNDTCVWGLASAGIPYQL 191
++ WTFL++G L +D C++G A +QL
Sbjct: 28 ASVWTFLKAGDHLISDDCLYGCTHALFEHQL 58
>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
Length = 975
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 338 ENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPV 392
EN+ N D+N + ++FH+P+ +K +A GA+AG ++ +PV
Sbjct: 86 ENRYNIVDRN---NAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPV 137
>pdb|1WXR|A Chain A, Crystal Structure Of Heme Binding Protein, An
Autotransporter Hemoglobine Protease From Pathogenic
Escherichia Coli
Length = 1048
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 338 ENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPV 392
EN+ N D+N + ++FH+P+ +K +A GA+AG ++ +PV
Sbjct: 86 ENRYNIVDRN---NAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPV 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,478,281
Number of Sequences: 62578
Number of extensions: 642426
Number of successful extensions: 1564
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 11
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)