BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007731
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RKQ|A Chain A, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
pdb|1RKQ|B Chain B, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
Length = 282
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 132/281 (46%), Gaps = 22/281 (7%)
Query: 319 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 378
+ I DMDGTLL IS A+ A +RG+ VV+ TG+ V + LK++ +
Sbjct: 5 IKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME-- 62
Query: 379 DGIISEFAPG---VFIQGLLVH-GRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGD 434
PG + G LV G + + L D R + S E A D
Sbjct: 63 -------QPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHAL--D 113
Query: 435 RCLTLFDHPLVDSLHTTYHEPKAEIIPAI----EDLLATVDIQKLIFLDTAEGVATTIRP 490
R TL+ D + T HE IP + E + K++ +D + I
Sbjct: 114 RT-TLYTANR-DISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIAR 171
Query: 491 YWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEML 550
E K++ V+++ P LEI+ +KG+GVK L D LG+ +EIMAIGD END+ M+
Sbjct: 172 IPQE-VKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMI 230
Query: 551 ELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYAF 591
E A +G+A+ N K VAN + SN EDGVA AI +Y
Sbjct: 231 EYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVL 271
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 142/281 (50%), Gaps = 27/281 (9%)
Query: 318 KFRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVG 377
K++ I D+DGTL NS+ +IS + L +G+++V+A+G+ ++ ++ +
Sbjct: 4 KYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNE 63
Query: 378 RDGIISEFAPGVFIQGLLVHGRQGREIFRRN-LDRDFCREAYQYSWEHKVPLIAFSGDRC 436
G I + G I + +E+ N L + Y+ + + + ++ + G
Sbjct: 64 FGGFILSYNGGEIIN------WESKEMMYENVLPNEVVPVLYECARTNHLSILTYDGAEI 117
Query: 437 LTLFDHPLVDSLHTTYHEPKAEI----IPAIEDLLA--TVDIQKLIFLDTAEGVATTIRP 490
+T ++ Y + +A + I D L T+ + K + + G A + P
Sbjct: 118 VT-------ENSLDPYVQKEAFLNKMAIRETNDFLTDITLPVAKCLIV----GDAGKLIP 166
Query: 491 YWSEAT---KDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDV 547
SE + + NV ++ P LE+VP G K + +LL+++G++ +E++AIGDG ND+
Sbjct: 167 VESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDL 226
Query: 548 EMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYR 588
M++ A +G+A+ N E K A+ I +NDEDGVA+AI R
Sbjct: 227 SMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGVAEAIER 267
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 11/270 (4%)
Query: 319 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 378
+R D+DGTLLN +IS + + E LSR VV A+G+ + ++ KK
Sbjct: 2 YRVFVFDLDGTLLNDNLEISEKDRRNI-EKLSRKCYVVFASGRMLVSTLNVEKKY----- 55
Query: 379 DGIISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGDRCLT 438
P + G +V+ + I + + ++ +Y V A+ D +
Sbjct: 56 ---FKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYS 112
Query: 439 LFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIRPYWSEATKD 498
D+ + S + + + P + +L++ + KL+ +DT E + ++ SE KD
Sbjct: 113 EKDNEEIKS-YARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERL-DELKEILSERFKD 170
Query: 499 RANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIA 558
V ++ P LEIVP KG ++ L + + +EI+ GD END+ M E A L +A
Sbjct: 171 VVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVA 230
Query: 559 LSNGSEKAKAVANVIGASNDEDGVADAIYR 588
+ N EK K ++++ +N++ GV+ + R
Sbjct: 231 MENAIEKVKEASDIVTLTNNDSGVSYVLER 260
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 136/281 (48%), Gaps = 27/281 (9%)
Query: 318 KFRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVG 377
K++ I D+DGTL NS+ +IS + L +G+++V+A+G+ ++ ++
Sbjct: 4 KYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRXNE 63
Query: 378 RDGIISEFAPGVFIQGLLVHGRQGREIFRRN-LDRDFCREAYQYSWEHKVPLIAFSGDRC 436
G I + G I + +E N L + Y+ + + + ++ + G
Sbjct: 64 FGGFILSYNGGEIIN------WESKEXXYENVLPNEVVPVLYECARTNHLSILTYDGAEI 117
Query: 437 LTLFDHPLVDSLHTTYHEPKAEI----IPAIEDLLA--TVDIQKLIFLDTAEGVATTIRP 490
+T ++ Y + +A + I D L T+ + K + + G A + P
Sbjct: 118 VT-------ENSLDPYVQKEAFLNKXAIRETNDFLTDITLPVAKCLIV----GDAGKLIP 166
Query: 491 YWSEAT---KDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDV 547
SE + + NV ++ P LE+VP G K + +LL+++G + +E++AIGDG ND+
Sbjct: 167 VESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGXTREEVIAIGDGYNDL 226
Query: 548 EMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYR 588
++ A G+A N E K A+ I +NDEDGVA+AI R
Sbjct: 227 SXIKFAGXGVAXGNAQEPVKKAADYITLTNDEDGVAEAIER 267
>pdb|2B30|A Chain A, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
pdb|2B30|B Chain B, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
pdb|2B30|C Chain C, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
pdb|2B30|D Chain D, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
Length = 301
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 132/288 (45%), Gaps = 21/288 (7%)
Query: 305 DRKQEGSLRFYKPKFRYIFCDMDGTL-LNSQSKISLTTAKALKEALSRGLKVVVATGKTR 363
D K E +L+ + + D DGTL ++ K+ A+KEA+ +G V + TG+++
Sbjct: 15 DLKVEEALK--GADIKLLLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSK 72
Query: 364 PAVISA-----LKKVDLVGRDGIISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAY 418
++SA LKK++ G PGV+I G +V+ + G + ++ D E
Sbjct: 73 VGILSAFGEENLKKMNFYG--------MPGVYINGTIVYDQIGYTLLDETIETDVYAELI 124
Query: 419 QYSWEHKV--PLIAFSGDRCLTLFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLI 476
Y E + I G+ D+ D L Y E ++ II E L + +I
Sbjct: 125 SYLVEKNLVNQTIFHRGESNYVTEDNKYADFLQKMYSENRSIIIRHNEMLKYRTMNKLMI 184
Query: 477 FLDTAEGVATTIRPYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKE 536
LD +E + T+ + K++ + E+ G K +G+ LL H +S +
Sbjct: 185 VLDPSE--SKTVIGNLKQKFKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNISNDQ 242
Query: 537 IMAIGDGENDVEMLELASLGIALSNGSEKAKAVAN-VIGASNDEDGVA 583
++ +GD END+ ML A++N ++ AK+ A V+ S+ E VA
Sbjct: 243 VLVVGDAENDIAMLSNFKYSFAVANATDSAKSHAKCVLPVSHREGAVA 290
>pdb|3MPO|A Chain A, The Crystal Structure Of A Hydrolase From Lactobacillus
Brevis
pdb|3MPO|B Chain B, The Crystal Structure Of A Hydrolase From Lactobacillus
Brevis
pdb|3MPO|C Chain C, The Crystal Structure Of A Hydrolase From Lactobacillus
Brevis
pdb|3MPO|D Chain D, The Crystal Structure Of A Hydrolase From Lactobacillus
Brevis
Length = 279
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 25/282 (8%)
Query: 319 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 378
+ I D+DGTLLN +++++ T A++ A ++G+KVV+ TG+ V L D+ G
Sbjct: 5 IKLIAIDIDGTLLNEKNELAQATIDAVQAAKAQGIKVVLCTGRPLTGVQPYLDAXDIDGD 64
Query: 379 D-------GIISEFAPGVFI--QGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVPLI 429
D G +++ G + L E + R + F E Y + +
Sbjct: 65 DQYAITFNGSVAQTISGKVLTNHSLTYEDYIDLEAWARKVRAHFQIETPDYIYTANKDIS 124
Query: 430 AFSGDRCLTLFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIR 489
A+ T+ + LV L Y E + + + I K F+D + V ++
Sbjct: 125 AY------TIAESYLVRXL-IQYRE--------VSETPRDLTISKAXFVDYPQ-VIEQVK 168
Query: 490 PYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEM 549
+ KDR +VVQ+ P +E+ SKG + L+D LG++ ++ +GD ND+
Sbjct: 169 ANXPQDFKDRFSVVQSAPYFIEVXNRRASKGGTLSELVDQLGLTADDVXTLGDQGNDLTX 228
Query: 550 LELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYAF 591
++ A LG+A N ++ K A + +N E+GVA AI +YA
Sbjct: 229 IKYAGLGVAXGNAIDEVKEAAQAVTLTNAENGVAAAIRKYAL 270
>pdb|2PQ0|A Chain A, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2PQ0|B Chain B, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2QYH|A Chain A, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|B Chain B, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|C Chain C, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|D Chain D, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
Length = 258
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 35/269 (13%)
Query: 322 IFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGRDGI 381
+F D+DGTLL+ Q ++ L+T +A++ G+ V +ATG+ P ++K +G D
Sbjct: 6 VFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATGRA-PFXFEHVRK--QLGIDSF 62
Query: 382 ISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGDRC-LTLF 440
+S V +G +++ ++ RR R EA++ + PL+ ++ ++
Sbjct: 63 VSFNGQYVVFEGNVLY----KQPLRREKVRALTEEAHK----NGHPLVFXDAEKXRASIG 114
Query: 441 DHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIRPY-------WS 493
DHP +H + K P DI + + AE +R Y W
Sbjct: 115 DHP---HIHVSXASLKFAHPPVDPLYYENKDIYQALLFCRAEEEEPYVRNYPEFRFVRWH 171
Query: 494 EATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELA 553
+ + D ++P G SK G++ ++ LG+ K++ A GDG ND+E L
Sbjct: 172 DVSTD-------------VLPAGGSKAEGIRXXIEKLGIDKKDVYAFGDGLNDIEXLSFV 218
Query: 554 SLGIALSNGSEKAKAVANVIGASNDEDGV 582
G+A N E+ K VA+ + D++G+
Sbjct: 219 GTGVAXGNAHEEVKRVADFVTKPVDKEGI 247
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 129/272 (47%), Gaps = 19/272 (6%)
Query: 320 RYIFCDMDGTLLNSQS-KISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 378
+ + D+DGTLL+ ++ K+S ++ ALK+ G+K+V+ATG+ S L ++D V
Sbjct: 13 KVLLLDVDGTLLSFETHKVSQSSIDALKKVHDSGIKIVIATGRAA----SDLHEIDAVPY 68
Query: 379 DGIISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGDRCLT 438
DG+I+ + G R G I + + R++ + + E + +
Sbjct: 69 DGVIA-------LNGAECVLRDGSVIRKVAIPAQDFRKSMELAREFDFAVALELNEGVFV 121
Query: 439 LFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIRPYWSEATKD 498
P V+ + P ++ IE++ + +L F E + P S +
Sbjct: 122 NRLTPTVEQIAGIVEHPVPPVVD-IEEMFERKECCQLCFYFDEEA-EQKVMPLLSGLSAT 179
Query: 499 RANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIA 558
R + P ++ GTSK +G+ + D+ V EIMA GDG ND+ ML+ A +G+A
Sbjct: 180 RWH-----PLFADVNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVA 234
Query: 559 LSNGSEKAKAVANVIGASNDEDGVADAIYRYA 590
+ N SEK ++VA+ + + D G+ A+ +
Sbjct: 235 MGNASEKVQSVADFVTDTVDNSGLYKALKHFG 266
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 135/284 (47%), Gaps = 40/284 (14%)
Query: 320 RYIFCDMDGTLLNSQS-KISLTTAKALKEALSRGLKVVVATGKTRPAV--ISALKKVDLV 376
+ +F D+DGTL++ ++ +I +T +AL+ A ++GLK+ +ATG+ + + +S L+ +L+
Sbjct: 3 KALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLI 62
Query: 377 GRDGIISEFAPGVFIQGLLVHGRQGRE-IFRRNLDRDFCREAYQYSWEHKVPLIAFSGDR 435
DG I+ F+ G E I++ + ++ + + + VP I
Sbjct: 63 --DGYITMNGAYCFV---------GEEVIYKSAIPQEEVKAMAAFCEKKGVPCI------ 105
Query: 436 CLTLFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIRPYWSEA 495
V+ + + +P + D L I + F + + + P+ +E
Sbjct: 106 --------FVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITE- 156
Query: 496 TKDRANVVQAIPD---------MLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGEND 546
++ V+ +IP ++ G +K G+ ++ H G+ +E M+ GDG ND
Sbjct: 157 -EEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGND 215
Query: 547 VEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYA 590
+ ML A++G+A+ E KA A+ + A DEDG++ A+ +
Sbjct: 216 ISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFG 259
>pdb|1OZ9|A Chain A, Crystal Structure Of Aq_1354, A Hypothetical Protein From
Aquifex Aeolicus
Length = 150
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 6/93 (6%)
Query: 167 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPILMLGDIVISVE 224
G ++ELS+ +++ IR+LNK +R +D TDVLS M + K+ LGD+VIS +
Sbjct: 37 GLNNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEEFGGYKI----LGDVVISQD 92
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 257
TA RQA E GHSL +E++ L+VHG++HLLG+DH
Sbjct: 93 TAERQARELGHSLEEEVKRLIVHGIVHLLGYDH 125
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 134/284 (47%), Gaps = 40/284 (14%)
Query: 320 RYIFCDMDGTLLNSQS-KISLTTAKALKEALSRGLKVVVATGKTRPAV--ISALKKVDLV 376
+ +F D+ GTL++ ++ +I +T +AL+ A ++GLK+ +ATG+ + + +S L+ +L+
Sbjct: 3 KALFFDIAGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLI 62
Query: 377 GRDGIISEFAPGVFIQGLLVHGRQGRE-IFRRNLDRDFCREAYQYSWEHKVPLIAFSGDR 435
DG I+ F+ G E I++ + ++ + + + VP I
Sbjct: 63 --DGYITMNGAYCFV---------GEEVIYKSAIPQEEVKAMAAFCEKKGVPCI------ 105
Query: 436 CLTLFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIRPYWSEA 495
V+ + + +P + D L I + F + + + P+ +E
Sbjct: 106 --------FVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITE- 156
Query: 496 TKDRANVVQAIPD---------MLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGEND 546
++ V+ +IP ++ G +K G+ ++ H G+ +E M+ GDG ND
Sbjct: 157 -EEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGND 215
Query: 547 VEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYA 590
+ ML A++G+A+ E KA A+ + A DEDG++ A+ +
Sbjct: 216 ISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFG 259
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 123/289 (42%), Gaps = 37/289 (12%)
Query: 320 RYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGRD 379
+ I D+DGTLLNS+ ++SL AL++A G++VVV+TG+ V S + + + +
Sbjct: 5 KLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRAHFDVXSIFEPLGI--KT 62
Query: 380 GIISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGDRCLT- 438
+IS G ++H +GR +D+ + + F+G T
Sbjct: 63 WVIS-------ANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGSAIYTP 115
Query: 439 -----LFD---------HPLVD------SLHTTYHEPKAEIIPAIEDLLAT---VDIQKL 475
L D +P D + Y + I + ++L +D +
Sbjct: 116 QNGRELLDVELDRFRSANPEADLSVLKQAAEVQYSQSGFAYINSFQELFEADEPIDFYNI 175
Query: 476 I-FLDTAEGVATTIRPYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVST 534
+ F E + + Y E +D +V + E+ SKG +K L L +
Sbjct: 176 LGFSFFKEKLEAGWKRY--EHAED-LTLVSSAEHNFELSSRKASKGQALKRLAKQLNIPL 232
Query: 535 KEIMAIGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVA 583
+E A+GD ND LE A G+A N E K++A+ + +NDE GVA
Sbjct: 233 EETAAVGDSLNDKSXLEAAGKGVAXGNAREDIKSIADAVTLTNDEHGVA 281
>pdb|3L7Y|A Chain A, The Crystal Structure Of Smu.1108c From Streptococcus
Mutans Ua159
Length = 304
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 122/282 (43%), Gaps = 32/282 (11%)
Query: 320 RYIFCDMDGTLLNSQSKISLTT-AKALKEALSRGLKVVVATG----KTRPAVISALKKVD 374
+ I DMDGT LNS+ + LK+ R ++ VVA+ + R +++
Sbjct: 38 KVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLT 97
Query: 375 LVGRDG--IISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVP--LIA 430
VG +G IIS+ Q L+ E+F++ D + Y E K P +IA
Sbjct: 98 FVGENGANIISK------NQSLI-------EVFQQREDI----ASIIYFIEEKYPQAVIA 140
Query: 431 FSGDRCLTL---FDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATT 487
SG++ L +V L + P E++ + L KL E A
Sbjct: 141 LSGEKKGYLKKGVSENIVKMLSPFF--PVLELVNSFSPL-PDERFFKLTLQVKEEESAQI 197
Query: 488 IRPYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDV 547
++ T R + ++I+ G KG ++ LL ++ +MA GDG ND+
Sbjct: 198 MKAIADYKTSQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDI 257
Query: 548 EMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRY 589
EML+LA A++N + KA AN SNDE GV D I Y
Sbjct: 258 EMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNY 299
>pdb|3PGV|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|B Chain B, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|C Chain C, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|D Chain D, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
Length = 285
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 59/299 (19%)
Query: 314 FYKPKFRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKV 373
+++ ++ + D+DGTLL+ ++ + LK +RG+ V ATG+ I +
Sbjct: 16 YFQGXYQVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRH---YIDVGQIR 72
Query: 374 DLVGRDGIISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFC------------------R 415
D +G I + + G VH G++IF NLDRD R
Sbjct: 73 DNLG----IRSYX--ITSNGARVHDSDGQQIFAHNLDRDIAADLFEIVRNDPKIVTNVYR 126
Query: 416 EAYQYSWEHKVPLIAFSGDRCLTLFDHPLVDSLHTTYHEPKAEIIP-AIEDLLATV-DIQ 473
E Y H+ F + +F++ L +EP E+ P I + T D +
Sbjct: 127 EDEWYXNRHRPEEXRFFKE---AVFNYKL--------YEP-GELDPQGISKVFFTCEDHE 174
Query: 474 KLIFLDTAEGVATTIRPYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVS 533
L+ L+ A W DR NV + LE+ G SKG ++ + LG +
Sbjct: 175 HLLPLEQAXNAR------WG----DRVNVSFSTLTCLEVXAGGVSKGHALEAVAKXLGYT 224
Query: 534 TKEIMAIGDGENDVEMLELASLGIALSNGSEKAKAVA---NVIGASNDEDGVADAIYRY 589
+ +A GDG ND E L A G +N ++ K + VIG++ D DA+ RY
Sbjct: 225 LSDCIAFGDGXNDAEXLSXAGKGCIXANAHQRLKDLHPELEVIGSNAD-----DAVPRY 278
>pdb|1RLM|A Chain A, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|B Chain B, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|C Chain C, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|D Chain D, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLT|A Chain A, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|B Chain B, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|C Chain C, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|D Chain D, Transition State Analogue Of Ybiv From E. Coli K12
Length = 271
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 41/282 (14%)
Query: 320 RYIFCDMDGTLLNSQSKISLTTAKA-LKEALSRGLKVVVATGKTRPAVISAL----KKVD 374
+ I DMDGT LN + A +E RG+K VVA+G +IS ++
Sbjct: 4 KVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEIS 63
Query: 375 LVGRDG-IISEFAPGVFIQGLLVHGRQ---GREIFRRNLDRDFC--REAY--QYSWEHKV 426
V +G ++ E +F L H + G + + L+ C + AY + + E V
Sbjct: 64 FVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFV 123
Query: 427 PLIAFSGDRCLTLFDHPLVDSLHTTY--HEPKAEIIPAIEDLLATVDIQKLIFLDTAEGV 484
L+A R + D+ +D + + + P +I I+ L +D G+
Sbjct: 124 ALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALD-----------GI 172
Query: 485 ATTIRPYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGE 544
+ + ++++ PG K +G+ LL +S + ++AIGD
Sbjct: 173 MKPVTSGFG---------------FIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSG 217
Query: 545 NDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
ND EML++A A+ N +E K +A N+ +G + I
Sbjct: 218 NDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVI 259
>pdb|3DNP|A Chain A, Crystal Structure Of Stress Response Protein Yhax From
Bacillus Subtilis
Length = 290
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 501 NVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALS 560
+V++ + L IVP G SK +G+ ++ LG+S +++AIG +D+ +ELA LG+A
Sbjct: 185 DVIRVNDEKLNIVPKGVSKEAGLALVASELGLSXDDVVAIGHQYDDLPXIELAGLGVAXG 244
Query: 561 NGSEKAKAVANVIGASNDEDGVA 583
N + K A+ + SNDE GVA
Sbjct: 245 NAVPEIKRKADWVTRSNDEQGVA 267
>pdb|1RLO|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|C Chain C, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|D Chain D, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
Length = 271
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 41/282 (14%)
Query: 320 RYIFCDMDGTLLNSQSKISLTTAKA-LKEALSRGLKVVVATGKTRPAVISAL----KKVD 374
+ I MDGT LN + A +E RG+K VVA+G +IS ++
Sbjct: 4 KVIVTXMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEIS 63
Query: 375 LVGRDG-IISEFAPGVFIQGLLVHGRQ---GREIFRRNLDRDFC--REAY--QYSWEHKV 426
V +G ++ E +F L H + G + + L+ C + AY + + E V
Sbjct: 64 FVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFV 123
Query: 427 PLIAFSGDRCLTLFDHPLVDSLHTTY--HEPKAEIIPAIEDLLATVDIQKLIFLDTAEGV 484
L+A R + D+ +D + + + P +I I+ L +D G+
Sbjct: 124 ALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALD-----------GI 172
Query: 485 ATTIRPYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGE 544
+ + ++++ PG K +G+ LL +S + ++AIGD
Sbjct: 173 MKPVTSGFG---------------FIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSG 217
Query: 545 NDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
ND EML++A A+ N +E K +A N+ +G + I
Sbjct: 218 NDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVI 259
>pdb|1XAX|A Chain A, Nmr Structure Of Hi0004, A Putative Essential Gene Product
From Haemophilus Influenzae
Length = 154
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 171 IELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP-ELKLPILMLGDIVISVETAARQ 229
+E+++ + +LN +R +D T+VLS P E++LP +LGD+VI + R+
Sbjct: 39 VEMTVRIVDEAESHELNLTYRGKDRPTNVLSFPFECPDEVELP--LLGDLVICRQVVERE 96
Query: 230 AEERGHSLLDEIRILMVHGLLHLLGFDH 257
A E+ L+ ++VHG LHLLG+DH
Sbjct: 97 ASEQEKPLMAHWAHMVVHGSLHLLGYDH 124
>pdb|1XM5|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Ybey From
E. Coli, Pfam Upf0054
pdb|1XM5|B Chain B, Crystal Structure Of Metal-Dependent Hydrolase Ybey From
E. Coli, Pfam Upf0054
pdb|1XM5|C Chain C, Crystal Structure Of Metal-Dependent Hydrolase Ybey From
E. Coli, Pfam Upf0054
pdb|1XM5|D Chain D, Crystal Structure Of Metal-Dependent Hydrolase Ybey From
E. Coli, Pfam Upf0054
Length = 155
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 151 KDSTYKTRDTAVEDVGGF-ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPEL 209
++S ++T AV + F E E++I + LN +R +D T+VLS VP
Sbjct: 20 EESQFQTWLNAV--IPQFQEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEVPP- 76
Query: 210 KLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 257
+ + +LGD+VI + ++A+E+G L ++VHG LHLLG+DH
Sbjct: 77 GMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDH 124
>pdb|2HF2|A Chain A, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
pdb|2HF2|B Chain B, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
Length = 283
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 41/282 (14%)
Query: 320 RYIFCDMDGTLLNSQSKISLTTAKA-LKEALSRGLKVVVATGKTRPAVISAL----KKVD 374
+ I D DGT LN + A +E RG+K VVA+ +IS ++
Sbjct: 6 KVIVTDXDGTFLNDAKTYNQPRFXAQYQELKKRGIKFVVASNNQYYQLISFFPELKDEIS 65
Query: 375 LVGRDG-IISEFAPGVFIQGLLVHGRQ---GREIFRRNLDRDFC--REAY--QYSWEHKV 426
V +G ++ E +F L H + G + + L+ C + AY + + E V
Sbjct: 66 FVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFV 125
Query: 427 PLIAFSGDRCLTLFDHPLVDSLHTTY--HEPKAEIIPAIEDLLATVDIQKLIFLDTAEGV 484
L A R + D+ +D + + + P +I I+ L +D G+
Sbjct: 126 ALXAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALD-----------GI 174
Query: 485 ATTIRPYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGE 544
+ + ++++ PG K +G+ LL +S + ++AIGD
Sbjct: 175 XKPVTSGFG---------------FIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSG 219
Query: 545 NDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
ND E L+ A A N +E K +A N+ +G + I
Sbjct: 220 NDAEXLKXARYSFAXGNAAENIKQIARYATDDNNHEGALNVI 261
>pdb|3FZQ|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase (Yp_001086940.1) From Clostridium Difficile
630 At 2.10 A Resolution
pdb|3FZQ|B Chain B, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase (Yp_001086940.1) From Clostridium Difficile
630 At 2.10 A Resolution
Length = 274
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 38/285 (13%)
Query: 319 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 378
++ + D+DGTL + I + A++ VV+ TG++ + V +G
Sbjct: 5 YKLLILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTGRSXGTI---QDDVLSLGV 61
Query: 379 DGIISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGDRCLT 438
DG I+ G +IQ G ++ ++ ++ +E + +V AFS +
Sbjct: 62 DGYIA--GGGNYIQ------YHGELLYNQSFNQRLIKEVVCLLKKREV---AFSIESQEK 110
Query: 439 LFDHPLVDSLHTTYHEPKA-----------EIIPAIEDL--LATVDIQKLIFLDTAEGVA 485
+F + + T ++ K E I ++ + DI K I L + E V
Sbjct: 111 VFXNQKAKEIFETXNQLKGTNSCINKQHIQEKITYENNIEEYKSQDIHK-ICLWSNEKVF 169
Query: 486 TTIRPYWSEATKDRANVVQ--AIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDG 543
++ + +D+ + Q EI+ KG +K L + LGV+ KE + GDG
Sbjct: 170 DEVK----DILQDKXELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETICFGDG 225
Query: 544 ENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYR 588
+ND+ + + + IA N ++ K +A I ED + IY+
Sbjct: 226 QNDIVXFQASDVTIAXKNSHQQLKDIATSIC----EDIFDNGIYK 266
>pdb|3GYG|A Chain A, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|B Chain B, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|C Chain C, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|D Chain D, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
Length = 289
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 449 HTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIRPYWSEATKDRANVVQAIPD 508
H Y++ + EI ++LLA I+K+ GV+ I +R N + P+
Sbjct: 155 HNFYYQEQDEINDK-KNLLA---IEKIC---EEYGVSVNI---------NRCNPLAGDPE 198
Query: 509 M---LEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEK 565
++ +P GT K V L+ ++T+ +A GD NDV L+ G L N +++
Sbjct: 199 DSYDVDFIPIGTGKNEIVTFXLEKYNLNTERAIAFGDSGNDVRXLQTVGNGYLLKNATQE 258
Query: 566 AKAVANVIGASNDEDGVADAI 586
AK + N+I S G+ + +
Sbjct: 259 AKNLHNLITDSEYSKGITNTL 279
>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii.
pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii
Length = 231
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 510 LEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEKAKAV 569
+ + P +KGSG++ + LG+ KE+ +GDGEND++ ++ +A++ + K
Sbjct: 145 IHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYKVAVAQAPKILKEN 204
Query: 570 ANVIGASNDEDGVADAIY 587
A+ + +G A+AIY
Sbjct: 205 ADYVTKKEYGEGGAEAIY 222
>pdb|3DAO|A Chain A, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
From Eubacterium Rectale At 1.80 A Resolution
pdb|3DAO|B Chain B, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
From Eubacterium Rectale At 1.80 A Resolution
Length = 283
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 479 DTAEGVATTIR-PYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEI 537
D E + T + P W++ +A++ A + ++ G SK + + L+D + E+
Sbjct: 175 DKCEELCTPVFIPAWNK----KAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEV 230
Query: 538 MAIGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGV 582
GD ND+E L+ A + A+SN ++ A A A E+GV
Sbjct: 231 CCFGDNLNDIEXLQNAGISYAVSNARQEVIAAAKHTCAPYWENGV 275
>pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima:
Vt1, A Nesgc Target Protein
Length = 172
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 171 IELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL---MLGDIVISVETAA 227
+ ++++ + + I++LN+++R +D TDVL+ P++ + G+I +
Sbjct: 54 VHVNVILVSEDEIKELNQQFRGQDRPTDVLT---------FPLMEEDVYGEIYVCPLIVE 104
Query: 228 RQAEERGHSLLDEIRILMVHGLLHLLGFDH 257
A E ++ E+ +++HG+LHL G+DH
Sbjct: 105 ENAREFNNTFEKELLEVVIHGILHLAGYDH 134
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 518 SKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALS 560
K + ++ GV + +A+GDG ND++ML A LGIA +
Sbjct: 323 GKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFN 365
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 510 LEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSN 561
++++P ++KG+ + L HL + + + GD ND+ + E ++ G+ + N
Sbjct: 154 VDLLPQRSNKGNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSARGVIVRN 205
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 530 LGVSTKEIMAIGDGENDVEMLELASLGIA 558
L ++T+ I+A GDG ND+ MLE A GIA
Sbjct: 258 LNIATENIIACGDGANDLPMLEHAGTGIA 286
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 533 STKEIMAI-GDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
S EI A+ GDG ND L+ A +GIA+ +G+ AK + ++ A ++ + A+
Sbjct: 694 SYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 748
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 533 STKEIMAI-GDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
S EI A+ GDG ND L+ A +GIA+ +G+ AK + ++ A ++ + A+
Sbjct: 693 SYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 747
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 533 STKEIMAI-GDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
S EI A+ GDG ND L+ A +GIA+ +G+ AK + ++ A ++ + A+
Sbjct: 693 SYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 747
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 533 STKEIMAI-GDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
S EI A+ GDG ND L+ A +GIA+ +G+ AK + ++ A ++ + A+
Sbjct: 692 SFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 746
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 526 LLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASND 578
+++ L + +++ IGDG ND L LA + +A+ NG + +K VA++I SND
Sbjct: 190 IIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSND 242
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 526 LLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASND 578
+++ L + +++ IGDG ND L LA + +A+ NG + +K VA++I SND
Sbjct: 190 IIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSND 242
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 526 LLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASND 578
+++ L + +++ IGDG ND L LA + +A+ NG + +K VA++I SND
Sbjct: 190 IIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSND 242
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 532 VSTKEIMA-IGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
+ KE++A +GDG ND L A LGIA+ +GS+ A +++ +D V AI
Sbjct: 515 LQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAI 570
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 532 VSTKEIMA-IGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
+ KE++A +GDG ND L A LGIA+ +GS+ A +++ +D V AI
Sbjct: 593 LQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAI 648
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 540 IGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVA 583
+GDG ND L A +GIA+ G++ A A+++ ND VA
Sbjct: 211 VGDGVNDAPALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVA 254
>pdb|3LOP|A Chain A, Crystal Structure Of Substrate-Binding Periplasmic Protein
(Pbp) From Ralstonia Solanacearum
Length = 364
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 438 TLFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIRPY 491
TL H L + +Y A + PA++ LLA D+Q + TAE A +R Y
Sbjct: 164 TLKAHALAITAXASYPRNTANVGPAVDKLLAA-DVQAIFLGATAEPAAQFVRQY 216
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 540 IGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVA 583
+GDG ND L A +GIA+ G++ A A+++ ND VA
Sbjct: 211 VGDGVNDAPALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVA 254
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen
Length = 529
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 24/122 (19%)
Query: 122 LPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDSTYKTRDTAVEDVGGFESIELSILFCNNE 181
+PD V + EMLR +P ++ D+ K S + D +++ FC +
Sbjct: 283 VPDHQVVFKLQEMLRGGSPVVL----DAAKTSRFGVLPKHAADASEMAWVDVPDCFCFH- 337
Query: 182 FIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEI 241
L W DE ++++G + ++ +++ER S+L EI
Sbjct: 338 ----LWNAWEDEATGE---------------VVVIGSCMTPADSIFNESDERLESVLTEI 378
Query: 242 RI 243
R+
Sbjct: 379 RL 380
>pdb|1L6R|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
pdb|1L6R|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
Length = 227
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 516 GTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEKAKAVANVI 573
G K V L + + EI+ IGD ND+ M +L +N ++ KAV++ +
Sbjct: 151 GEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKACPANATDNIKAVSDFV 208
>pdb|3ZTW|A Chain A, The 3-Dimensional Structure Of Apo-Mpgp, The
Mannosyl-3-Phosphoglycerate Phosphatase From Thermus
Thermophilus Hb27 In Its Apo-Form
pdb|3ZTW|B Chain B, The 3-Dimensional Structure Of Apo-Mpgp, The
Mannosyl-3-Phosphoglycerate Phosphatase From Thermus
Thermophilus Hb27 In Its Apo-Form
pdb|3ZTY|A Chain A, The 3-Dimensional Structure Of The Gadolinium Derivative
Of Mpgp, The Mannosyl-3-Phosphoglycerate Phosphatase
From Thermus Thermophilus Hb27
pdb|3ZTY|B Chain B, The 3-Dimensional Structure Of The Gadolinium Derivative
Of Mpgp, The Mannosyl-3-Phosphoglycerate Phosphatase
From Thermus Thermophilus Hb27
pdb|3ZU6|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Orthophosphate Reaction
Products.
pdb|3ZU6|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Orthophosphate Reaction
Products.
pdb|3ZUP|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate And Orthophosphate Reaction Products.
pdb|3ZUP|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate And Orthophosphate Reaction Products.
pdb|3ZW7|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Metaphosphate.
pdb|3ZW7|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Metaphosphate.
pdb|3ZWD|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate.
pdb|3ZWD|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate.
pdb|3ZWK|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Metavanadate
pdb|3ZWK|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Metavanadate
pdb|3ZX4|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate,Orthophosphate And Magnesium
pdb|3ZX4|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate,Orthophosphate And Magnesium
pdb|3ZX5|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, Covalently Bound To Vanadate And In
Complex With Alpha-Mannosylglycerate And Magnesium
pdb|3ZX5|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, Covalently Bound To Vanadate And In
Complex With Alpha-Mannosylglycerate And Magnesium
Length = 259
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 322 IFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTR 363
+F D+DGTLL+ + ++ +AL+ + G+ VV T KTR
Sbjct: 3 VFTDLDGTLLDERGELG-PAREALERLRALGVPVVPVTAKTR 43
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 320 RYIFCDMDGTLLNSQSKISLTTAK---ALKEALSRGLKVVVATGKTRPAVISALKKV 373
R + D+DGTL ++ + I+ TA+ A+ A+SRG ++ G+ PA ++ L V
Sbjct: 20 RGVILDLDGTLADTPAAIATITAEVLAAMGTAVSRG-AILSTVGRPLPASLAGLLGV 75
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 541 GDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADA 585
GDG ND L A +GIA+ G++ A A V D G+A A
Sbjct: 623 GDGVNDAPALAKADIGIAMGTGTDVAIESAGVTLLHGDLRGIAKA 667
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 319 FRYIFCDMDGTLLNSQSKISLTTAKALKE 347
R I D+DGTL++S I+L K LKE
Sbjct: 3 LRVILFDLDGTLIDSAKDIALALEKTLKE 31
>pdb|2IU7|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 117 CIEDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDS 153
CI+D +P DP + EML++ TL L + D
Sbjct: 83 CIDDRIPTDPTMFRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 532 VSTKEIMA-IGDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIY 587
+ KE++A +GDG ND L A LGIA+ +GS+ A +++ +D V AI
Sbjct: 201 LQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQ 257
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 320 RYIFCDMDGTLLNSQSKISLTTAKALKE 347
R I D+DGTL++S I+L K LKE
Sbjct: 2 RVILFDLDGTLIDSAKDIALALEKTLKE 29
>pdb|2IV1|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 117 CIEDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDS 153
CI+D +P DP + EML++ TL L + D
Sbjct: 83 CIDDRIPTDPTMYQFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|3FDQ|A Chain A, Recognition Of At-Rich Dna Binding Sites By The Mogr
Repressor
pdb|3FDQ|B Chain B, Recognition Of At-Rich Dna Binding Sites By The Mogr
Repressor
Length = 170
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 109 ELELNVSICIEDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDSTYKTRD--TAVEDV 165
ELEL +S C + + +D +VL+I+EML LN + L+++ YK + VED+
Sbjct: 76 ELEL-LSACYQIAILEDMKVLDISEMLSLNDLRIFPKTPSQLQNTYYKLKKELIQVEDI 133
>pdb|2IVG|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 117 CIEDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDS 153
CI+D +P DP + EML++ TL L + D
Sbjct: 83 CIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|2IVQ|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 117 CIEDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDS 153
CI+D +P DP + EML++ TL L + D
Sbjct: 83 CIDDRIPTDPTMYKFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 491 YWSEATKDRANVVQAIPDMLEIVP------------PGTSKGSGVKMLLDHLGVSTKEIM 538
Y+S+ K++ ++ A + LEIV +K + L V +
Sbjct: 206 YFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQQYDVEIHNTV 265
Query: 539 AIGDGENDVEMLELASLGIA 558
A+GDG ND+ M+ A LG+A
Sbjct: 266 AVGDGANDLVMMAAAGLGVA 285
>pdb|2IUO|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 117 CIEDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDS 153
CI+D +P DP + EML++ TL L + D
Sbjct: 83 CIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 517 TSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIAL 559
+KG ++ + G++ ++ +A+GDG ND+ M + A L IA
Sbjct: 142 NAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAF 184
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 517 TSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALS 560
+KG ++ + G++ ++ +A+GDG ND+ M + A L IA
Sbjct: 142 NAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAFC 185
>pdb|2IVB|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 117 CIEDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDS 153
CI+D +P DP + EML++ TL L + D
Sbjct: 83 CIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 532 VSTKEIMA-IGDGENDVEMLELASLGIALSNGSEKA 566
+ KE++A +GDG ND L A LGIA+ +GS+ A
Sbjct: 221 LQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVA 256
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 532 VSTKEIMA-IGDGENDVEMLELASLGIALSNGSEKA 566
+ KE++A +GDG ND L A LGIA+ +GS+ A
Sbjct: 221 LQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVA 256
>pdb|3MKR|A Chain A, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 291
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 527 LDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEK 565
LD L ++ KE+ + D + D + +LA+ ++L+ G EK
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181
>pdb|1XVI|A Chain A, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
pdb|1XVI|B Chain B, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
Length = 275
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 322 IFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVG 377
+F D+DGTLL+S S A L + V++ + KT ++ K + L G
Sbjct: 12 VFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQG 67
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 541 GDGENDVEMLELASLGIALSNGSEKAKAVANVI 573
GDG ND L+ A +GIA+++ ++ A+ ++++
Sbjct: 587 GDGVNDAPALKKADIGIAVADATDAARGASDIV 619
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 541 GDGENDVEMLELASLGIALSNGSEKAKAVANVIGASNDEDGVADAI 586
GDG ND L+ A GIA+ S+ A++ A+++ + + DA+
Sbjct: 633 GDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGLGAIIDAL 678
>pdb|1H31|A Chain A, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|C Chain C, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|E Chain E, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|G Chain G, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H32|A Chain A, Reduced Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H33|A Chain A, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|2OZ1|A Chain A, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|C Chain C, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|E Chain E, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|G Chain G, The Soxax Complex Of Rhodovulum Sulfidophilum
Length = 261
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 123 PDDPEVLNIAEMLRLNAPTLMKLA--FDSLKDS-TYKTRDTAVEDVGGFES 170
PDDP V+N + APT LA FD ++ T++T DT ++ FE+
Sbjct: 2 PDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFEN 52
>pdb|1KYT|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc014)
pdb|1KYT|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc014)
Length = 227
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 516 GTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNGSEKAKAVANVI 573
G K V L + + EI+ IGD ND +L +N ++ KAV++ +
Sbjct: 151 GEDKAFAVNKLKEXYSLEYDEILVIGDSNNDXPXFQLPVRKACPANATDNIKAVSDFV 208
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 318 KFRYIFCDMDGTLLNSQSKISLTTAKALKEA-LSRGLKVVVATGKTRPAVISALKKVDLV 376
+F+ I D+DGTL+NS ++L+ ALK+ L + + +V T A + + + VD
Sbjct: 22 QFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVXTWIGNGADVLSQRAVDWA 81
Query: 377 GR 378
+
Sbjct: 82 CK 83
>pdb|3N1U|A Chain A, Structure Of Putative Had Superfamily (Subfamily Iii A)
Hydrolase From Legionella Pneumophila
Length = 191
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 519 KGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELASLGIALSNG 562
K S + L LG++ E IGD D+ +++ LG+A+SN
Sbjct: 95 KRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLGVAVSNA 138
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 532 VSTKEIMA-IGDGENDVEMLELASLGIALSNG 562
+ KE++A +GDG ND L A LGIA+ +G
Sbjct: 80 LQAKEVVAFVGDGINDAPALAQADLGIAVGSG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,713,851
Number of Sequences: 62578
Number of extensions: 620999
Number of successful extensions: 1806
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1703
Number of HSP's gapped (non-prelim): 96
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)