Query 007732
Match_columns 591
No_of_seqs 338 out of 2356
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 14:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0720 Molecular chaperone (D 100.0 4.2E-52 9.1E-57 439.4 -0.3 349 190-587 11-361 (490)
2 COG0484 DnaJ DnaJ-class molecu 100.0 3.3E-29 7.2E-34 263.3 7.8 144 438-588 2-172 (371)
3 PRK14296 chaperone protein Dna 99.9 2.2E-23 4.7E-28 220.3 9.4 67 439-508 3-69 (372)
4 PRK14288 chaperone protein Dna 99.9 3.1E-23 6.7E-28 218.8 9.5 67 440-508 3-69 (369)
5 KOG0712 Molecular chaperone (D 99.9 4.4E-23 9.4E-28 214.9 10.2 133 439-587 3-155 (337)
6 PRK14286 chaperone protein Dna 99.9 1.8E-22 4E-27 213.1 12.5 68 439-508 3-70 (372)
7 PRK14279 chaperone protein Dna 99.9 1.4E-22 2.9E-27 215.5 10.0 68 439-508 8-75 (392)
8 PRK14282 chaperone protein Dna 99.9 3.2E-22 6.9E-27 210.9 9.0 68 439-508 3-71 (369)
9 PRK14287 chaperone protein Dna 99.9 6.8E-22 1.5E-26 208.8 11.3 67 439-508 3-69 (371)
10 PRK14277 chaperone protein Dna 99.9 1.3E-21 2.7E-26 207.6 10.9 69 438-508 3-71 (386)
11 PRK14285 chaperone protein Dna 99.8 1.4E-21 2.9E-26 206.1 9.4 67 440-508 3-69 (365)
12 PRK14295 chaperone protein Dna 99.8 1.8E-21 3.9E-26 206.8 10.1 66 439-506 8-73 (389)
13 PRK14294 chaperone protein Dna 99.8 3.4E-21 7.3E-26 203.0 11.7 68 439-508 3-70 (366)
14 PRK14297 chaperone protein Dna 99.8 2.7E-21 5.8E-26 204.7 10.8 68 439-508 3-70 (380)
15 PRK14278 chaperone protein Dna 99.8 3.2E-21 6.9E-26 204.1 11.4 66 440-508 3-68 (378)
16 PRK14276 chaperone protein Dna 99.8 2.8E-21 6.1E-26 204.6 10.4 67 439-508 3-69 (380)
17 PRK14283 chaperone protein Dna 99.8 2.1E-21 4.4E-26 205.4 8.8 68 438-508 3-70 (378)
18 KOG0713 Molecular chaperone (D 99.8 1.7E-21 3.7E-26 201.9 7.8 72 435-508 11-82 (336)
19 PRK14298 chaperone protein Dna 99.8 2E-21 4.3E-26 205.7 8.2 67 439-508 4-70 (377)
20 PRK14301 chaperone protein Dna 99.8 2.6E-21 5.7E-26 204.5 8.7 68 439-508 3-70 (373)
21 PRK14280 chaperone protein Dna 99.8 5.8E-21 1.2E-25 202.0 10.5 67 439-508 3-69 (376)
22 PRK10767 chaperone protein Dna 99.8 5.4E-21 1.2E-25 201.5 10.0 68 439-508 3-70 (371)
23 PRK14291 chaperone protein Dna 99.8 9.1E-21 2E-25 200.8 11.6 66 440-508 3-68 (382)
24 PRK14284 chaperone protein Dna 99.8 7.3E-21 1.6E-25 202.1 10.9 67 440-508 1-67 (391)
25 PTZ00037 DnaJ_C chaperone prot 99.8 2.4E-21 5.1E-26 208.0 7.1 123 440-586 28-177 (421)
26 PRK14289 chaperone protein Dna 99.8 1.8E-20 3.8E-25 198.7 11.9 68 439-508 4-71 (386)
27 PRK14281 chaperone protein Dna 99.8 3E-20 6.5E-25 197.9 12.6 67 440-508 3-69 (397)
28 PRK14290 chaperone protein Dna 99.8 4.3E-20 9.4E-25 194.6 11.5 67 440-508 3-70 (365)
29 TIGR02349 DnaJ_bact chaperone 99.8 8.3E-20 1.8E-24 191.2 11.0 65 441-508 1-65 (354)
30 PRK14300 chaperone protein Dna 99.8 8.1E-20 1.8E-24 193.0 10.9 66 440-508 3-68 (372)
31 PRK14293 chaperone protein Dna 99.8 1.9E-19 4.1E-24 190.3 11.6 67 439-508 2-68 (374)
32 PRK14292 chaperone protein Dna 99.8 9.4E-20 2E-24 192.1 8.9 66 440-508 2-67 (371)
33 KOG0715 Molecular chaperone (D 99.8 9.7E-19 2.1E-23 179.9 7.8 68 440-510 43-110 (288)
34 KOG0691 Molecular chaperone (D 99.7 2.8E-17 6.1E-22 169.6 7.0 70 439-510 4-73 (296)
35 PRK14299 chaperone protein Dna 99.7 3.7E-17 8E-22 167.7 7.2 67 439-508 3-69 (291)
36 KOG0716 Molecular chaperone (D 99.7 2.8E-17 6.2E-22 166.5 6.1 67 440-508 31-97 (279)
37 PF00226 DnaJ: DnaJ domain; I 99.7 6.8E-17 1.5E-21 129.3 6.4 63 441-505 1-64 (64)
38 KOG0717 Molecular chaperone (D 99.6 1.8E-16 3.8E-21 169.7 8.1 67 439-507 7-74 (508)
39 PRK10266 curved DNA-binding pr 99.6 5.8E-16 1.3E-20 159.9 7.1 67 439-508 3-69 (306)
40 KOG0718 Molecular chaperone (D 99.6 2E-15 4.4E-20 161.8 6.2 68 439-508 8-78 (546)
41 smart00271 DnaJ DnaJ molecular 99.6 4.4E-15 9.5E-20 116.9 6.1 59 440-500 1-60 (60)
42 COG2214 CbpA DnaJ-class molecu 99.6 3.9E-15 8.4E-20 138.6 6.8 68 438-507 4-72 (237)
43 PTZ00341 Ring-infected erythro 99.6 4E-15 8.6E-20 170.5 7.1 69 438-509 571-639 (1136)
44 cd06257 DnaJ DnaJ domain or J- 99.5 1.5E-14 3.3E-19 111.7 6.3 55 441-497 1-55 (55)
45 KOG0719 Molecular chaperone (D 99.5 1.1E-14 2.3E-19 145.5 6.2 68 439-508 13-82 (264)
46 KOG0624 dsRNA-activated protei 99.5 4.9E-14 1.1E-18 147.7 6.3 75 432-508 386-463 (504)
47 KOG0721 Molecular chaperone (D 99.4 1.9E-13 4.2E-18 135.3 6.2 71 437-509 96-166 (230)
48 PRK05014 hscB co-chaperone Hsc 99.4 2.7E-13 5.9E-18 130.2 7.0 69 440-508 1-74 (171)
49 TIGR03835 termin_org_DnaJ term 99.4 2.2E-13 4.7E-18 153.6 7.2 66 440-508 2-67 (871)
50 PRK01356 hscB co-chaperone Hsc 99.4 5.5E-13 1.2E-17 127.8 7.2 69 440-508 2-73 (166)
51 PHA03102 Small T antigen; Revi 99.4 3.6E-13 7.8E-18 127.8 5.7 64 440-509 5-70 (153)
52 PRK03578 hscB co-chaperone Hsc 99.4 7E-13 1.5E-17 128.2 7.2 70 440-509 6-80 (176)
53 PRK00294 hscB co-chaperone Hsc 99.4 9.1E-13 2E-17 127.1 7.8 72 438-509 2-78 (173)
54 KOG0550 Molecular chaperone (D 99.3 2.2E-12 4.7E-17 137.7 6.6 72 435-508 368-440 (486)
55 KOG0714 Molecular chaperone (D 99.2 4E-12 8.8E-17 124.5 4.1 69 439-509 2-71 (306)
56 KOG1150 Predicted molecular ch 99.2 2.3E-11 5.1E-16 119.6 7.1 88 417-506 24-118 (250)
57 KOG0722 Molecular chaperone (D 99.2 6.8E-12 1.5E-16 127.0 3.3 70 440-512 33-102 (329)
58 PRK09430 djlA Dna-J like membr 99.1 8.8E-11 1.9E-15 120.0 6.2 57 440-498 200-263 (267)
59 PTZ00100 DnaJ chaperone protei 99.1 1E-10 2.3E-15 106.7 5.0 51 440-496 65-115 (116)
60 PRK01773 hscB co-chaperone Hsc 99.0 6.3E-10 1.4E-14 107.6 7.3 70 440-509 2-76 (173)
61 PHA02624 large T antigen; Prov 99.0 3E-10 6.6E-15 127.0 5.8 59 440-504 11-71 (647)
62 TIGR00714 hscB Fe-S protein as 98.9 4.1E-09 8.9E-14 100.3 6.6 57 453-509 2-63 (157)
63 COG5407 SEC63 Preprotein trans 98.8 2.5E-09 5.3E-14 115.4 5.0 68 439-508 97-169 (610)
64 COG5269 ZUO1 Ribosome-associat 98.6 3.4E-08 7.5E-13 101.3 4.5 68 439-506 42-112 (379)
65 KOG1789 Endocytosis protein RM 98.2 1.2E-06 2.6E-11 101.9 5.7 55 440-497 1281-1337(2235)
66 KOG0568 Molecular chaperone (D 97.6 0.00013 2.8E-09 74.2 6.8 57 440-499 47-104 (342)
67 KOG3192 Mitochondrial J-type c 97.3 0.00027 5.8E-09 68.1 4.8 74 436-509 4-82 (168)
68 KOG0723 Molecular chaperone (D 97.0 0.0011 2.3E-08 60.4 5.1 50 443-498 59-108 (112)
69 PF14901 Jiv90: Cleavage induc 96.6 0.00072 1.6E-08 60.2 0.7 40 550-589 2-41 (94)
70 COG1076 DjlA DnaJ-domain-conta 96.2 0.0037 7.9E-08 60.5 3.1 67 441-507 2-73 (174)
71 KOG0431 Auxilin-like protein a 95.9 0.0077 1.7E-07 66.7 4.4 42 453-494 399-447 (453)
72 COG1076 DjlA DnaJ-domain-conta 95.4 0.012 2.5E-07 57.1 3.0 54 440-495 113-173 (174)
73 PF05297 Herpes_LMP1: Herpesvi 91.0 0.067 1.4E-06 56.4 0.0 32 259-290 78-114 (381)
74 PF03656 Pam16: Pam16; InterP 90.7 0.65 1.4E-05 43.7 6.2 52 443-500 61-112 (127)
75 PF09605 Trep_Strep: Hypotheti 87.9 6.7 0.00015 38.7 11.3 63 289-351 61-127 (186)
76 PRK10263 DNA translocase FtsK; 85.0 5.5 0.00012 49.8 10.8 12 306-317 170-181 (1355)
77 PF11808 DUF3329: Domain of un 80.8 4.5 9.7E-05 35.5 5.9 31 268-298 11-41 (90)
78 KOG0724 Zuotin and related mol 79.3 1.9 4E-05 45.5 3.6 53 454-506 4-60 (335)
79 COG1480 Predicted membrane-ass 78.3 25 0.00054 41.5 12.4 122 239-360 299-443 (700)
80 PF03208 PRA1: PRA1 family pro 78.3 19 0.00042 33.6 9.7 37 290-327 100-136 (153)
81 PF04156 IncA: IncA protein; 77.2 10 0.00023 36.6 7.8 9 310-318 49-57 (191)
82 PF00684 DnaJ_CXXCXGXG: DnaJ c 76.4 1.7 3.8E-05 35.8 1.9 36 552-587 14-53 (66)
83 PRK10263 DNA translocase FtsK; 74.4 15 0.00034 46.1 9.9 9 195-203 65-73 (1355)
84 PRK11598 putative metal depend 73.4 20 0.00044 41.1 10.0 38 247-284 51-92 (545)
85 TIGR02185 Trep_Strep conserved 72.8 39 0.00084 33.5 10.6 63 289-351 63-130 (189)
86 cd06181 BI-1-like BAX inhibito 70.9 1.1E+02 0.0024 30.1 15.3 39 225-263 51-90 (212)
87 PF12805 FUSC-like: FUSC-like 70.4 16 0.00034 37.9 7.6 20 479-498 239-258 (284)
88 TIGR02098 MJ0042_CXXC MJ0042 f 69.4 2.6 5.7E-05 30.9 1.3 35 553-588 2-38 (38)
89 TIGR02642 phage_xxxx uncharact 69.3 2.7 5.8E-05 42.0 1.7 29 553-587 99-127 (186)
90 COG4709 Predicted membrane pro 69.1 65 0.0014 32.7 11.2 23 238-260 82-104 (195)
91 TIGR00947 2A73 probable bicarb 68.9 1.1E+02 0.0024 33.7 14.1 23 330-352 205-227 (425)
92 PF14687 DUF4460: Domain of un 67.2 11 0.00024 34.7 5.1 46 453-498 5-54 (112)
93 COG1295 Rbn Ribonuclease BN fa 66.1 1.8E+02 0.0039 30.7 14.6 24 297-324 262-285 (303)
94 PF03208 PRA1: PRA1 family pro 65.3 18 0.00038 33.9 6.2 55 287-341 59-114 (153)
95 PRK11644 sensory histidine kin 63.8 1.2E+02 0.0025 34.1 13.3 8 206-213 54-61 (495)
96 PF13446 RPT: A repeated domai 61.9 12 0.00027 30.2 4.0 27 440-468 5-31 (62)
97 PRK13706 conjugal transfer pil 61.7 1.7E+02 0.0037 30.8 13.0 102 214-322 58-172 (248)
98 PF00684 DnaJ_CXXCXGXG: DnaJ c 58.8 5.5 0.00012 32.9 1.4 30 548-584 36-65 (66)
99 COG0484 DnaJ DnaJ-class molecu 58.4 5.8 0.00013 43.5 1.9 10 457-466 48-57 (371)
100 PF07698 7TM-7TMR_HD: 7TM rece 57.5 1.9E+02 0.004 28.0 16.2 72 265-336 62-137 (194)
101 PF08507 COPI_assoc: COPI asso 57.4 1.7E+02 0.0036 27.4 12.5 69 248-319 33-101 (136)
102 PRK09598 lipid A phosphoethano 57.1 86 0.0019 35.9 10.9 18 323-340 179-196 (522)
103 PF13719 zinc_ribbon_5: zinc-r 56.2 5.9 0.00013 29.5 1.1 34 553-586 2-36 (37)
104 PF11833 DUF3353: Protein of u 55.1 33 0.00071 34.5 6.4 38 453-498 3-40 (194)
105 PF13903 Claudin_2: PMP-22/EMP 54.8 93 0.002 28.5 9.0 16 337-352 148-163 (172)
106 PF09726 Macoilin: Transmembra 54.5 4.4E+02 0.0096 31.6 16.3 54 197-272 43-97 (697)
107 KOG4453 Predicted ER membrane 54.2 2E+02 0.0044 30.3 11.9 57 155-214 62-118 (269)
108 PF13886 DUF4203: Domain of un 53.2 2.4E+02 0.0052 27.9 13.0 56 306-363 114-169 (210)
109 PF03839 Sec62: Translocation 52.3 22 0.00047 36.6 4.8 30 271-304 142-171 (224)
110 KOG4800 Neuronal membrane glyc 52.2 78 0.0017 33.0 8.5 41 249-293 58-98 (248)
111 PF05191 ADK_lid: Adenylate ki 52.1 9.2 0.0002 28.6 1.5 33 554-588 2-34 (36)
112 KOG2927 Membrane component of 51.5 30 0.00065 38.0 5.8 58 249-311 198-261 (372)
113 PF13994 PgaD: PgaD-like prote 51.3 57 0.0012 30.7 7.1 21 243-263 14-34 (138)
114 PLN02922 prenyltransferase 51.2 47 0.001 35.5 7.2 64 234-304 76-140 (315)
115 PRK09678 DNA-binding transcrip 51.2 12 0.00027 32.1 2.4 36 554-590 2-44 (72)
116 PF12036 DUF3522: Protein of u 50.7 71 0.0015 31.7 7.9 38 282-319 115-161 (186)
117 TIGR00844 c_cpa1 na(+)/h(+) an 50.3 1.5E+02 0.0032 36.1 11.7 10 580-589 707-716 (810)
118 PF10947 DUF2628: Protein of u 50.3 1.2E+02 0.0025 27.0 8.6 19 246-264 41-59 (108)
119 smart00778 Prim_Zn_Ribbon Zinc 49.6 9.8 0.00021 28.8 1.3 32 552-583 2-33 (37)
120 PF14800 DUF4481: Domain of un 49.1 27 0.00059 37.5 5.0 17 248-264 72-88 (308)
121 TIGR02755 TraX_Ftype type-F co 48.7 2.6E+02 0.0056 29.0 11.8 43 303-356 129-172 (224)
122 PRK02983 lysS lysyl-tRNA synth 47.7 2.8E+02 0.0061 34.8 13.9 52 210-262 11-67 (1094)
123 PRK00398 rpoP DNA-directed RNA 47.6 13 0.00028 28.6 1.8 32 553-588 3-34 (46)
124 PF07787 DUF1625: Protein of u 47.4 36 0.00079 34.8 5.5 16 210-225 179-194 (248)
125 PF07857 DUF1632: CEO family ( 47.3 40 0.00086 35.3 5.8 80 206-306 23-102 (254)
126 PLN03165 chaperone protein dna 47.0 14 0.00029 34.3 2.1 30 551-591 73-102 (111)
127 KOG3882 Tetraspanin family int 46.8 86 0.0019 31.2 8.0 25 266-290 52-76 (237)
128 PF11026 DUF2721: Protein of u 46.0 96 0.0021 29.0 7.6 28 251-278 61-88 (130)
129 COG1107 Archaea-specific RecJ- 45.9 12 0.00026 43.5 1.9 35 548-589 48-82 (715)
130 PF05297 Herpes_LMP1: Herpesvi 45.9 6.8 0.00015 41.9 0.0 43 327-369 144-188 (381)
131 PF08273 Prim_Zn_Ribbon: Zinc- 45.6 11 0.00024 29.0 1.1 32 552-583 2-34 (40)
132 PF09726 Macoilin: Transmembra 45.3 1.6E+02 0.0034 35.2 10.8 50 250-303 51-100 (697)
133 PF01098 FTSW_RODA_SPOVE: Cell 45.2 1.2E+02 0.0027 32.3 9.3 34 215-248 67-101 (358)
134 PF13717 zinc_ribbon_4: zinc-r 44.7 11 0.00023 28.1 0.9 33 553-585 2-35 (36)
135 PF08792 A2L_zn_ribbon: A2L zi 44.5 18 0.00039 26.6 2.0 30 553-586 3-32 (33)
136 PRK10160 taurine transporter s 43.9 3.8E+02 0.0081 27.8 12.3 19 270-288 88-106 (275)
137 TIGR00751 menA 1,4-dihydroxy-2 43.4 67 0.0015 33.8 6.8 17 288-304 110-126 (284)
138 PRK13857 type IV secretion sys 42.5 1E+02 0.0022 29.2 7.0 44 278-321 62-106 (120)
139 PF12760 Zn_Tnp_IS1595: Transp 42.0 16 0.00035 28.1 1.5 28 554-584 19-46 (46)
140 PF13453 zf-TFIIB: Transcripti 41.8 13 0.00029 27.9 1.1 30 556-587 2-31 (41)
141 PF09723 Zn-ribbon_8: Zinc rib 41.7 23 0.00049 27.0 2.3 34 553-587 5-38 (42)
142 PRK10245 adrA diguanylate cycl 41.3 1.2E+02 0.0025 32.7 8.4 15 288-302 141-155 (366)
143 PRK10490 sensor protein KdpD; 41.1 90 0.002 37.8 8.3 34 266-304 430-463 (895)
144 PF03811 Zn_Tnp_IS1: InsA N-te 41.1 17 0.00037 27.3 1.5 32 551-582 3-36 (36)
145 PHA03239 envelope glycoprotein 41.1 95 0.0021 35.1 7.8 72 246-317 254-340 (429)
146 PRK07419 1,4-dihydroxy-2-napht 41.0 82 0.0018 33.6 7.1 18 287-304 119-136 (304)
147 PF08449 UAA: UAA transporter 40.7 3.5E+02 0.0076 28.0 11.6 67 254-320 227-295 (303)
148 PRK10862 SoxR reducing system 40.5 1E+02 0.0022 29.7 7.1 15 261-275 75-89 (154)
149 PRK12585 putative monovalent c 40.3 1.2E+02 0.0026 31.0 7.6 14 255-268 16-29 (197)
150 PRK10726 hypothetical protein; 40.3 1.3E+02 0.0029 27.8 7.2 63 241-304 40-104 (105)
151 COG5547 Small integral membran 39.9 48 0.0011 27.8 4.0 17 301-317 24-40 (62)
152 COG4317 Uncharacterized protei 39.9 42 0.00092 30.0 3.9 31 269-299 4-41 (93)
153 PF11239 DUF3040: Protein of u 39.2 71 0.0015 27.5 5.2 27 276-302 51-77 (82)
154 PF12084 DUF3561: Protein of u 38.8 1.4E+02 0.003 27.8 7.2 54 242-304 44-107 (107)
155 TIGR00383 corA magnesium Mg(2+ 38.6 21 0.00046 37.0 2.3 33 286-318 269-307 (318)
156 PF10571 UPF0547: Uncharacteri 38.2 13 0.00028 26.1 0.5 25 555-587 2-26 (26)
157 TIGR01667 YCCS_YHJK integral m 38.0 1.8E+02 0.004 34.6 10.0 47 293-339 441-490 (701)
158 PF14205 Cys_rich_KTR: Cystein 37.4 20 0.00044 29.5 1.5 35 551-585 2-38 (55)
159 TIGR02210 rodA_shape rod shape 37.3 5.6E+02 0.012 27.7 12.8 29 220-248 66-94 (352)
160 COG3357 Predicted transcriptio 36.8 51 0.0011 29.9 4.0 28 552-583 57-84 (97)
161 PRK14279 chaperone protein Dna 36.4 24 0.00052 38.7 2.4 35 548-587 168-202 (392)
162 KOG2041 WD40 repeat protein [G 36.4 1E+02 0.0022 37.2 7.3 33 157-189 656-692 (1189)
163 KOG0828 Predicted E3 ubiquitin 36.2 6.6E+02 0.014 29.4 13.3 93 139-231 268-386 (636)
164 KOG4112 Signal peptidase subun 36.2 62 0.0013 29.6 4.4 24 269-292 28-51 (101)
165 COG3677 Transposase and inacti 36.2 23 0.00049 33.4 1.8 35 553-587 30-65 (129)
166 COG1289 Predicted membrane pro 36.2 1.1E+02 0.0025 35.6 7.8 58 285-342 406-468 (674)
167 PTZ00043 cytochrome c oxidase 36.0 1.3E+02 0.0029 31.5 7.3 38 456-496 95-132 (268)
168 TIGR01652 ATPase-Plipid phosph 35.7 7.5E+02 0.016 30.8 15.0 17 111-127 775-791 (1057)
169 PF09538 FYDLN_acid: Protein o 35.7 18 0.00039 33.3 1.0 29 553-586 9-37 (108)
170 PF07672 MFS_Mycoplasma: Mycop 35.5 2E+02 0.0043 30.7 8.7 42 277-318 204-265 (267)
171 PF10011 DUF2254: Predicted me 35.3 6.3E+02 0.014 27.6 15.3 131 216-350 11-149 (371)
172 PRK10794 cell wall shape-deter 35.3 6.1E+02 0.013 27.7 12.8 30 219-248 80-109 (370)
173 PF02673 BacA: Bacitracin resi 35.2 2.2E+02 0.0048 29.8 9.1 87 209-317 36-122 (259)
174 PRK09546 zntB zinc transporter 35.1 30 0.00065 36.4 2.8 31 287-317 276-312 (324)
175 PRK11281 hypothetical protein; 35.0 5E+02 0.011 32.9 13.2 39 221-260 557-595 (1113)
176 TIGR01299 synapt_SV2 synaptic 34.3 5.3E+02 0.011 31.0 13.0 114 200-322 617-732 (742)
177 PF10337 DUF2422: Protein of u 34.3 5.6E+02 0.012 28.5 12.6 40 190-229 16-55 (459)
178 PRK14291 chaperone protein Dna 34.1 24 0.00052 38.5 1.9 34 548-586 151-184 (382)
179 COG2194 Predicted membrane-ass 34.1 4.7E+02 0.01 30.5 12.2 27 265-291 69-95 (555)
180 PF03878 YIF1: YIF1; InterPro 33.9 4.1E+02 0.0089 27.8 10.6 65 232-298 101-171 (240)
181 TIGR00869 sec62 protein transl 33.8 79 0.0017 32.9 5.4 28 282-309 157-186 (232)
182 TIGR02235 menA_cyano-plnt 1,4- 33.1 1.6E+02 0.0034 31.1 7.6 18 287-304 106-123 (285)
183 PF11286 DUF3087: Protein of u 33.0 61 0.0013 32.2 4.3 54 274-341 20-83 (165)
184 PRK01766 multidrug efflux prot 32.9 6.6E+02 0.014 27.1 15.8 21 198-218 235-255 (456)
185 KOG3618 Adenylyl cyclase [Gene 32.3 4.3E+02 0.0093 32.6 11.4 61 205-273 70-130 (1318)
186 PRK12887 ubiA tocopherol phyty 31.9 1.5E+02 0.0033 31.5 7.4 18 287-304 120-137 (308)
187 PF04144 SCAMP: SCAMP family; 31.8 5.1E+02 0.011 25.5 13.1 54 210-265 32-85 (177)
188 PF01544 CorA: CorA-like Mg2+ 31.8 17 0.00036 36.5 0.2 34 286-319 245-286 (292)
189 PF14362 DUF4407: Domain of un 31.8 2.3E+02 0.0051 29.5 8.6 21 455-475 154-174 (301)
190 PRK14294 chaperone protein Dna 31.8 26 0.00057 37.9 1.8 33 548-585 139-171 (366)
191 PRK13387 1,4-dihydroxy-2-napht 31.7 1.4E+02 0.0029 32.0 7.0 19 287-305 114-132 (317)
192 TIGR03655 anti_R_Lar restricti 31.6 28 0.00061 27.6 1.4 33 555-587 3-38 (53)
193 PF06738 DUF1212: Protein of u 31.4 3.9E+02 0.0085 25.8 9.6 6 230-235 125-130 (193)
194 PRK14301 chaperone protein Dna 31.2 28 0.0006 37.9 1.8 34 547-585 138-171 (373)
195 COG5265 ATM1 ABC-type transpor 31.2 1.7E+02 0.0036 33.6 7.7 84 218-311 21-104 (497)
196 PRK14416 membrane protein; Pro 31.2 3.6E+02 0.0077 27.6 9.4 27 298-324 146-176 (200)
197 TIGR01666 YCCS hypothetical me 31.2 2.5E+02 0.0054 33.6 9.6 54 288-341 434-490 (704)
198 PRK14300 chaperone protein Dna 31.0 28 0.00061 37.8 1.8 36 547-587 139-174 (372)
199 PRK14288 chaperone protein Dna 31.0 30 0.00064 37.6 2.0 34 548-587 135-168 (369)
200 TIGR00914 2A0601 heavy metal e 30.7 1.1E+02 0.0023 37.8 6.7 45 246-290 888-933 (1051)
201 cd03031 GRX_GRX_like Glutaredo 30.5 30 0.00065 33.3 1.7 34 551-584 108-142 (147)
202 PF13248 zf-ribbon_3: zinc-rib 30.2 26 0.00056 24.2 0.9 23 554-584 3-25 (26)
203 PRK14284 chaperone protein Dna 30.1 26 0.00057 38.3 1.4 34 548-586 153-186 (391)
204 PF06570 DUF1129: Protein of u 30.1 2.3E+02 0.0049 28.2 7.9 15 230-244 91-105 (206)
205 PRK06080 1,4-dihydroxy-2-napht 29.9 2.6E+02 0.0057 28.9 8.6 18 288-305 114-131 (293)
206 PF03348 Serinc: Serine incorp 29.9 1.3E+02 0.0028 33.8 6.7 97 231-340 63-194 (429)
207 TIGR01654 bact_immun_7tm bacte 29.8 7.7E+02 0.017 29.1 13.2 74 211-286 167-241 (679)
208 PF07264 EI24: Etoposide-induc 29.7 2.8E+02 0.0061 26.9 8.4 13 246-258 15-27 (219)
209 PF13829 DUF4191: Domain of un 29.7 74 0.0016 33.0 4.4 23 297-319 43-65 (224)
210 PRK10767 chaperone protein Dna 29.6 33 0.00071 37.1 2.0 34 547-585 136-169 (371)
211 PF10112 Halogen_Hydrol: 5-bro 29.5 1.7E+02 0.0038 28.7 6.9 20 455-476 137-156 (199)
212 PF07331 TctB: Tripartite tric 29.5 2.7E+02 0.0059 25.2 7.8 83 269-351 41-140 (141)
213 PRK08156 type III secretion sy 29.4 8.1E+02 0.018 27.1 13.6 14 357-370 189-202 (361)
214 PRK12392 bacteriochlorophyll c 29.4 97 0.0021 33.4 5.5 18 287-304 125-142 (331)
215 PRK13735 conjugal transfer mat 29.3 1.4E+02 0.0031 36.9 7.3 20 297-316 360-379 (942)
216 COG4062 MtrB Tetrahydromethano 29.2 86 0.0019 29.0 4.2 22 278-299 77-98 (108)
217 TIGR01666 YCCS hypothetical me 29.1 1.5E+02 0.0033 35.4 7.4 41 457-497 272-313 (704)
218 PRK14295 chaperone protein Dna 29.1 36 0.00077 37.3 2.2 35 547-586 160-194 (389)
219 COG0600 TauC ABC-type nitrate/ 28.8 6.8E+02 0.015 26.3 11.4 100 215-315 12-133 (258)
220 KOG3103 Rab GTPase interacting 28.6 4.4E+02 0.0095 27.9 9.7 65 268-339 178-244 (249)
221 PRK09776 putative diguanylate 28.5 2.8E+02 0.0061 33.3 9.6 139 208-351 40-200 (1092)
222 KOG1287 Amino acid transporter 28.4 5.2E+02 0.011 29.8 11.1 43 222-264 45-108 (479)
223 PRK10774 cell division protein 28.4 8.7E+02 0.019 27.1 12.8 38 219-256 106-151 (404)
224 COG0266 Nei Formamidopyrimidin 28.4 1.1E+02 0.0024 32.6 5.5 28 554-583 246-273 (273)
225 PF09297 zf-NADH-PPase: NADH p 28.3 30 0.00065 24.7 1.0 27 555-585 5-31 (32)
226 PRK09459 pspG phage shock prot 28.3 3.7E+02 0.0079 23.8 7.6 9 297-305 55-63 (76)
227 PRK14286 chaperone protein Dna 28.2 36 0.00078 37.0 2.0 34 547-585 144-177 (372)
228 PF14369 zf-RING_3: zinc-finge 28.1 44 0.00096 24.8 1.9 12 576-587 22-33 (35)
229 PF13240 zinc_ribbon_2: zinc-r 28.0 29 0.00062 23.6 0.8 22 556-585 2-23 (23)
230 PRK11560 phosphoethanolamine t 27.9 1.4E+02 0.003 34.7 6.6 43 247-289 49-97 (558)
231 COG1480 Predicted membrane-ass 27.8 8.2E+02 0.018 29.5 12.7 12 463-474 592-603 (700)
232 PRK14811 formamidopyrimidine-D 27.7 1E+02 0.0023 32.1 5.2 31 554-586 236-266 (269)
233 PF02535 Zip: ZIP Zinc transpo 27.5 5.8E+02 0.013 26.1 10.5 90 227-317 209-309 (317)
234 PRK11827 hypothetical protein; 27.4 33 0.00071 28.7 1.2 30 553-586 8-37 (60)
235 PF07235 DUF1427: Protein of u 27.3 42 0.00091 30.2 1.9 29 270-298 4-39 (90)
236 PRK04214 rbn ribonuclease BN/u 27.2 8.8E+02 0.019 26.8 13.7 19 295-317 249-267 (412)
237 PF07947 YhhN: YhhN-like prote 27.1 5.6E+02 0.012 24.5 12.7 15 308-322 134-148 (185)
238 PF03203 MerC: MerC mercury re 27.1 4.7E+02 0.01 23.8 8.7 25 253-277 6-30 (116)
239 TIGR02349 DnaJ_bact chaperone 27.1 37 0.0008 36.4 1.9 34 547-585 137-170 (354)
240 PLN00012 chlorophyll synthetas 26.8 3.1E+02 0.0067 30.3 8.8 75 266-340 171-266 (375)
241 PRK14296 chaperone protein Dna 26.4 38 0.00083 36.9 1.8 9 578-586 209-217 (372)
242 KOG0061 Transporter, ABC super 26.3 9.2E+02 0.02 28.3 13.0 125 213-338 360-510 (613)
243 PF03176 MMPL: MMPL family; I 26.2 2.7E+02 0.0059 29.0 8.0 12 250-261 157-168 (333)
244 PF10724 DUF2516: Protein of u 26.2 1.2E+02 0.0027 27.6 4.7 17 268-284 48-64 (100)
245 PRK11909 cobalt transport prot 26.1 1.4E+02 0.003 30.8 5.7 18 272-289 67-84 (230)
246 PRK14282 chaperone protein Dna 26.1 41 0.00089 36.5 2.0 34 547-585 146-179 (369)
247 COG3704 VirB6 Type IV secretor 25.9 2.3E+02 0.005 31.8 7.7 20 163-182 105-124 (406)
248 TIGR00955 3a01204 The Eye Pigm 25.9 1.1E+03 0.023 27.4 14.9 21 283-303 442-463 (617)
249 PF10031 DUF2273: Small integr 25.8 1.1E+02 0.0024 24.7 3.9 22 299-320 22-43 (51)
250 PF08019 DUF1705: Domain of un 25.6 4.7E+02 0.01 24.8 8.8 15 288-302 71-85 (156)
251 PF06341 DUF1056: Protein of u 25.6 3.4E+02 0.0074 23.1 6.8 44 249-299 6-49 (63)
252 smart00834 CxxC_CXXC_SSSS Puta 25.6 46 0.001 24.2 1.6 30 554-584 6-35 (41)
253 PF06609 TRI12: Fungal trichot 25.6 7.5E+02 0.016 29.2 12.0 139 207-351 310-460 (599)
254 PRK14298 chaperone protein Dna 25.5 42 0.00091 36.6 2.0 10 577-586 200-209 (377)
255 PRK05978 hypothetical protein; 25.5 35 0.00077 33.1 1.2 34 552-588 32-65 (148)
256 PRK01637 hypothetical protein; 25.5 4.9E+02 0.011 27.1 9.7 17 297-317 244-260 (286)
257 PLN03165 chaperone protein dna 25.4 42 0.00091 31.2 1.6 31 555-585 54-85 (111)
258 TIGR00776 RhaT RhaT L-rhamnose 25.3 6.9E+02 0.015 25.9 10.7 10 218-227 35-44 (290)
259 TIGR01667 YCCS_YHJK integral m 25.2 3.6E+02 0.0078 32.2 9.5 47 301-347 76-130 (701)
260 TIGR03155 sulfolob_CbsB cytoch 25.2 2.8E+02 0.006 29.7 7.6 58 241-298 42-112 (302)
261 PRK11463 fxsA phage T7 F exclu 25.1 4E+02 0.0087 25.7 8.3 35 266-300 9-46 (148)
262 PF12051 DUF3533: Protein of u 25.0 3.4E+02 0.0074 29.5 8.7 135 208-367 199-339 (382)
263 KOG2946 Uncharacterized conser 24.9 1.4E+02 0.0031 31.0 5.4 40 280-322 157-196 (234)
264 PRK15033 tricarballylate utili 24.8 4E+02 0.0086 29.9 9.1 18 248-265 237-254 (389)
265 COG2835 Uncharacterized conser 24.7 46 0.00099 28.0 1.6 30 553-586 8-37 (60)
266 KOG2824 Glutaredoxin-related p 24.6 40 0.00087 35.9 1.5 34 551-584 238-271 (281)
267 PRK14285 chaperone protein Dna 24.5 40 0.00088 36.6 1.6 34 547-585 140-173 (365)
268 PRK13591 ubiA prenyltransferas 24.5 1.3E+02 0.0028 32.5 5.3 13 292-304 124-136 (307)
269 PHA03237 envelope glycoprotein 24.2 2.5E+02 0.0055 31.7 7.6 57 246-302 248-304 (424)
270 PF07907 YibE_F: YibE/F-like p 23.9 6.6E+02 0.014 26.1 10.2 82 222-303 7-101 (244)
271 PF14257 DUF4349: Domain of un 23.9 92 0.002 31.9 3.9 24 275-298 233-256 (262)
272 PF02366 PMT: Dolichyl-phospha 23.6 2.7E+02 0.0058 27.8 7.1 31 270-301 168-198 (245)
273 PRK11383 hypothetical protein; 23.5 7.1E+02 0.015 24.4 9.5 49 246-299 9-57 (145)
274 PF14354 Lar_restr_allev: Rest 23.5 51 0.0011 26.3 1.6 30 554-583 4-37 (61)
275 PF04515 Choline_transpo: Plas 23.4 4.6E+02 0.0099 27.3 9.1 43 275-317 30-72 (334)
276 PRK13021 secF preprotein trans 23.4 3.3E+02 0.0072 29.2 8.0 21 206-226 114-134 (297)
277 COG2943 MdoH Membrane glycosyl 23.3 1.7E+02 0.0036 34.4 6.0 21 291-311 99-119 (736)
278 COG4214 XylH ABC-type xylose t 23.3 1.5E+02 0.0034 32.9 5.6 32 288-319 117-148 (394)
279 PF14965 BRI3BP: Negative regu 23.3 3.8E+02 0.0083 27.0 7.8 38 304-341 103-145 (177)
280 PF03303 WTF: WTF protein; In 23.1 7.8E+02 0.017 26.1 10.2 26 84-112 13-38 (247)
281 PRK14276 chaperone protein Dna 22.7 53 0.0011 35.9 2.0 10 577-586 205-214 (380)
282 PRK15127 multidrug efflux syst 22.7 1.8E+02 0.0039 36.0 6.7 43 248-290 883-926 (1049)
283 PRK14278 chaperone protein Dna 22.6 49 0.0011 36.1 1.8 9 555-563 158-166 (378)
284 PRK10907 intramembrane serine 22.4 5.9E+02 0.013 27.0 9.6 49 205-255 132-180 (276)
285 PF04606 Ogr_Delta: Ogr/Delta- 22.3 73 0.0016 24.8 2.2 35 556-591 2-43 (47)
286 COG2715 SpmA Uncharacterized m 22.2 1.8E+02 0.0039 29.6 5.4 51 444-500 99-149 (206)
287 TIGR00844 c_cpa1 na(+)/h(+) an 22.2 5.3E+02 0.011 31.6 10.1 12 336-347 336-347 (810)
288 PF12805 FUSC-like: FUSC-like 22.1 4.8E+02 0.01 27.0 8.8 16 305-320 70-85 (284)
289 PF06645 SPC12: Microsomal sig 22.0 2E+02 0.0043 24.8 5.0 41 269-315 13-53 (76)
290 PF04956 TrbC: TrbC/VIRB2 fami 21.9 2.2E+02 0.0048 24.6 5.5 28 279-306 46-74 (99)
291 TIGR00540 hemY_coli hemY prote 21.8 2E+02 0.0044 31.1 6.2 22 263-284 1-22 (409)
292 PRK00293 dipZ thiol:disulfide 21.7 5.2E+02 0.011 29.9 9.8 49 273-321 326-379 (571)
293 PLN00151 potassium transporter 21.7 3.6E+02 0.0078 33.1 8.6 90 206-305 467-576 (852)
294 PRK12882 ubiA prenyltransferas 21.6 7.1E+02 0.015 25.6 9.9 18 287-304 105-122 (276)
295 PRK14287 chaperone protein Dna 21.5 50 0.0011 36.0 1.6 35 547-586 132-166 (371)
296 TIGR01248 drrC daunorubicin re 21.5 6.8E+02 0.015 23.5 9.9 23 345-367 127-149 (152)
297 PF07295 DUF1451: Protein of u 21.5 54 0.0012 31.7 1.6 33 553-589 112-144 (146)
298 PF07856 Orai-1: Mediator of C 21.5 2.2E+02 0.0047 28.4 5.8 41 254-298 110-152 (175)
299 KOG2592 Tumor differentially e 21.4 98 0.0021 34.7 3.7 51 232-282 68-131 (426)
300 TIGR02230 ATPase_gene1 F0F1-AT 21.4 3.9E+02 0.0085 24.5 7.0 46 260-305 39-97 (100)
301 PRK14297 chaperone protein Dna 21.2 54 0.0012 35.7 1.7 33 548-585 143-175 (380)
302 PRK14281 chaperone protein Dna 21.2 59 0.0013 35.7 2.1 33 548-586 158-190 (397)
303 PF03176 MMPL: MMPL family; I 21.2 2.3E+02 0.005 29.5 6.3 11 177-187 108-118 (333)
304 COG5552 Uncharacterized conser 21.1 2.3E+02 0.005 25.1 5.2 36 439-476 2-37 (88)
305 COG3086 RseC Positive regulato 21.1 2.8E+02 0.006 27.3 6.2 52 260-327 74-127 (150)
306 PF14362 DUF4407: Domain of un 21.0 1.6E+02 0.0035 30.7 5.2 14 357-370 105-118 (301)
307 PF10225 DUF2215: Uncharacteri 20.9 4.3E+02 0.0092 27.5 8.1 15 284-298 41-55 (249)
308 KOG3359 Dolichyl-phosphate-man 20.9 5E+02 0.011 31.4 9.4 19 212-230 160-178 (723)
309 PF13536 EmrE: Multidrug resis 20.9 5.8E+02 0.013 22.4 9.6 48 224-273 11-59 (113)
310 PRK14280 chaperone protein Dna 20.7 59 0.0013 35.4 1.9 9 578-586 203-211 (376)
311 PRK01265 heat shock protein Ht 20.7 4.8E+02 0.01 28.3 8.7 8 430-437 137-144 (324)
312 PF10943 DUF2632: Protein of u 20.6 2.6E+02 0.0056 27.8 6.0 22 256-277 72-93 (233)
313 PF05478 Prominin: Prominin; 20.5 2.4E+02 0.0052 34.0 7.0 33 288-320 459-491 (806)
314 PF06044 DRP: Dam-replacing fa 20.3 42 0.00091 35.2 0.7 36 551-586 29-64 (254)
315 COG1030 NfeD Membrane-bound se 20.1 2.6E+02 0.0057 31.7 6.7 17 304-320 305-321 (436)
316 TIGR01473 cyoE_ctaB protoheme 20.1 5.1E+02 0.011 26.8 8.5 23 220-242 44-66 (280)
317 TIGR00918 2A060602 The Eukaryo 20.1 3.6E+02 0.0079 34.2 8.5 32 280-311 992-1023(1145)
318 PHA00626 hypothetical protein 20.0 67 0.0015 26.9 1.6 32 555-586 2-34 (59)
No 1
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-52 Score=439.40 Aligned_cols=349 Identities=40% Similarity=0.633 Sum_probs=279.6
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 007732 190 LMTNIYNAHDYVSRKVQQVYPVALNHL-GHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFK 268 (591)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~ 268 (591)
++.-.++.||.+ .++||.|+..+ +++|.+.|++ .+|+||++||||+++++|++++|+||||+++|..||.++.|
T Consensus 11 ~~~~~~k~~~~~----~~~~p~~~~~~~~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~~s~~ql~~ 85 (490)
T KOG0720|consen 11 VKLRVYKGRDLV----LTKMPLVFSVVFMHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSANSMGQLTK 85 (490)
T ss_pred ecccccchhhhh----hhcCCcccchhhccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeeccccccccc
Confidence 444566777655 56666666655 5778888877 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhcchhhHHHHHHHHhhhhheeeehhhhh
Q 007732 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLG 348 (591)
Q Consensus 269 ~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~~h~r~~~~~~~~y~vy~~~~~~gwlg 348 (591)
++++|+++.+++.|.|.++++.+++++|+++||+| +||.+..+.+- ++|.++|+ +.+.|+.|.+-++.+|++
T Consensus 86 ~~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~s~kt~w~ 157 (490)
T KOG0720|consen 86 FILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSALSYKTWWG 157 (490)
T ss_pred cccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceeeeccchhhh
Confidence 99999999999999999999999999999999999 99999988877 89999999 788999999999999999
Q ss_pred HhhhhccccccHHHHHHHHhhhcccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007732 349 LLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMT 428 (591)
Q Consensus 349 ~~Ls~nlsfls~D~L~~lL~~~ve~~s~ss~~Eqs~~~s~~~~~~s~ess~~Sss~s~~s~ss~~~~~~psts~~ds~~t 428 (591)
.++.+++.++.-+...+|....+..+.-.- ..+..+.+..+.+..+.-++..+.......+.+.+
T Consensus 158 ~~~k~l~~~i~l~f~~~f~~~~~~~~~~~r---------------~l~~vk~~~~e~g~~tv~~~~~g~~~e~~va~n~t 222 (490)
T KOG0720|consen 158 LTLKLLRAVILLDFSIYFERNKIIQQTADR---------------PLEPVKDSGAEEGDETVESRDYGCKKEIPVATNAT 222 (490)
T ss_pred hcchhhhhhhhhhcceeeeeehhhHHHHhh---------------hcchhhhhccccCCCchhcCCcccccccccccchh
Confidence 999999999988888887765554431100 01111112222222222333333444444455556
Q ss_pred c-HHHHHHHhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhH
Q 007732 429 S-EDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (591)
Q Consensus 429 s-~~ev~ril~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~ 507 (591)
. .+++.|.++..|+|.+|||++ ++|.++|||.|||+|..+|||||. .|.|+|+|+.|+.|||+|+|+++|+.||..
T Consensus 223 ~~adrl~re~~~~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 223 SFADRLSRELNILDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hHHHhhhhhhcCCCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 6 688999999999999999998 999999999999999999999998 799999999999999999999999999998
Q ss_pred hhHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccceeeecccccccccccccccceeEE
Q 007732 508 LRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 508 l~~ee~~~~f~~f~~~~~~~g~~gffg~gf~~s~~~~e~~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
+.+++.. ++++......- ....-+..+.|.|++|+++|.|+.|.+++++++||+.|+..+.|
T Consensus 300 ~~kene~--~~~~~~~~~~~----------------~~~~eEA~ntI~CskC~n~H~r~~T~rs~s~AR~C~~C~~~H~A 361 (490)
T KOG0720|consen 300 LKKENEL--HRQVISSLNDL----------------QKAVEEARNTIFCSKCGNTHFRVLTSRSPSQARWCAECGVKHPA 361 (490)
T ss_pred HHHHHHH--HHHHHHHHHHH----------------HHHHHHHHhheehhhhcCcceeeeecCChhhhHHHHHhCccCcc
Confidence 7765443 22221111100 00111236789999999999999999999999999999988765
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-29 Score=263.30 Aligned_cols=144 Identities=29% Similarity=0.399 Sum_probs=104.2
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhHHHHHHHH
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYF 517 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ee~~~~f 517 (591)
..+|||+||||++ +||++||||||||||++||||+|+++++|+++|++|++|||||+||+||+.||++.........+
T Consensus 2 ~~~dyYeiLGV~k--~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~ 79 (371)
T COG0484 2 AKRDYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGF 79 (371)
T ss_pred CccchhhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCc
Confidence 3589999999999 99999999999999999999999988999999999999999999999999999976543211111
Q ss_pred hhh--hccc--cCCCCCCCCCCCCC---CCCC--CC------------------CCCcccccccccccccccceeeeccc
Q 007732 518 RRF--QSAS--QKNGRHGFFGSGYA---RSEA--DC------------------DDPFGESRRIACKKCNNFHVWIETKK 570 (591)
Q Consensus 518 ~~f--~~~~--~~~g~~gffg~gf~---~s~~--~~------------------e~~~~~sr~I~C~~C~Gtg~~~~T~~ 570 (591)
..+ ...+ ..+-+..+|+++.+ +... .. +..+.+++...|+.|+|+| .+
T Consensus 80 gg~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsG-----ak 154 (371)
T COG0484 80 GGFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSG-----AK 154 (371)
T ss_pred CCCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCC-----CC
Confidence 111 0000 00001112322211 1101 11 1247788999999999987 56
Q ss_pred ccccccccccccceeEEE
Q 007732 571 SKASARWCQVFIFAFCTY 588 (591)
Q Consensus 571 ~~skar~C~~C~GsF~ay 588 (591)
.++...+|+.|+|+.+..
T Consensus 155 ~gt~~~tC~tC~G~G~v~ 172 (371)
T COG0484 155 PGTDPKTCPTCNGSGQVR 172 (371)
T ss_pred CCCCCCcCCCCCCcCeEE
Confidence 677899999999987654
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.2e-23 Score=220.26 Aligned_cols=67 Identities=34% Similarity=0.484 Sum_probs=63.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||+.||++.
T Consensus 3 ~~dyY~~Lgv~~--~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 3 KKDYYEVLGVSK--TASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 479999999999 899999999999999999999997 5789999999999999999999999999964
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=3.1e-23 Score=218.81 Aligned_cols=67 Identities=37% Similarity=0.576 Sum_probs=64.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +||.+|||+|||+||++||||+|+++++|+++|++|++|||||+||+||+.||++.
T Consensus 3 ~dyY~vLgv~~--~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G 69 (369)
T PRK14288 3 LSYYEILEVEK--HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYG 69 (369)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 79999999999 89999999999999999999999877889999999999999999999999999964
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.4e-23 Score=214.93 Aligned_cols=133 Identities=32% Similarity=0.380 Sum_probs=95.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhHHHHHHHHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ee~~~~f~ 518 (591)
.+.||+||||++ +|+++|||||||+||++||||||++ |.++|++|++|||||+||+||+.||++....- +
T Consensus 3 ~~~~y~il~v~~--~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~-----~ 72 (337)
T KOG0712|consen 3 NTKLYDILGVSP--DASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL-----Q 72 (337)
T ss_pred ccccceeeccCC--CcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh-----c
Confidence 478999999999 9999999999999999999999964 89999999999999999999999999763221 1
Q ss_pred hhhccccCCCCCCCCCCCCCCCCC----C----------------CCCCcccccccccccccccceeeeccccccccccc
Q 007732 519 RFQSASQKNGRHGFFGSGYARSEA----D----------------CDDPFGESRRIACKKCNNFHVWIETKKSKASARWC 578 (591)
Q Consensus 519 ~f~~~~~~~g~~gffg~gf~~s~~----~----------------~e~~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C 578 (591)
.-+..++.+++..+|+.++....+ . ...++.++++.+|+.|.|.+ .....+..|
T Consensus 73 ~g~~~~g~~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsG------gksg~~~~C 146 (337)
T KOG0712|consen 73 GGGGGGGFGGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSG------GKSGSAPKC 146 (337)
T ss_pred ccCCCCCCccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCC------CCCCCCCCC
Confidence 111111111122233322211111 1 12357889999999999976 233455589
Q ss_pred ccccceeEE
Q 007732 579 QVFIFAFCT 587 (591)
Q Consensus 579 ~~C~GsF~a 587 (591)
..|+|+-+.
T Consensus 147 ~~C~GsGv~ 155 (337)
T KOG0712|consen 147 TTCRGSGVQ 155 (337)
T ss_pred CCCCCCCce
Confidence 999988664
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.8e-22 Score=213.15 Aligned_cols=68 Identities=43% Similarity=0.615 Sum_probs=64.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||+||+||++|+.||++.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (372)
T PRK14286 3 ERSYYDILGVSK--SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence 379999999999 89999999999999999999999877889999999999999999999999999864
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.4e-22 Score=215.55 Aligned_cols=68 Identities=41% Similarity=0.609 Sum_probs=65.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||+||+||+||+.||++.
T Consensus 8 ~~Dyy~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSS--DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 379999999999 89999999999999999999999877889999999999999999999999999974
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=3.2e-22 Score=210.93 Aligned_cols=68 Identities=41% Similarity=0.578 Sum_probs=63.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||+|+++ +.|+++|++|++||++|+||++|+.||++.
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 479999999999 89999999999999999999999754 678999999999999999999999999864
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=6.8e-22 Score=208.78 Aligned_cols=67 Identities=39% Similarity=0.563 Sum_probs=63.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||+||+.||++.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G 69 (371)
T PRK14287 3 KRDYYEVLGVDR--NASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFG 69 (371)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence 379999999999 899999999999999999999997 4789999999999999999999999999864
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.3e-21 Score=207.59 Aligned_cols=69 Identities=39% Similarity=0.594 Sum_probs=65.3
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+..|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 3 AKKDYYEILGVDR--NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 4579999999999 89999999999999999999999877889999999999999999999999999864
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=206.12 Aligned_cols=67 Identities=46% Similarity=0.663 Sum_probs=64.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||++|+.||++.
T Consensus 3 ~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 3 RDYYEILGLSK--GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence 79999999999 89999999999999999999999877889999999999999999999999999964
No 12
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.8e-21 Score=206.81 Aligned_cols=66 Identities=44% Similarity=0.695 Sum_probs=63.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~ 506 (591)
..|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPK--DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 379999999999 899999999999999999999998778899999999999999999999999998
No 13
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.4e-21 Score=203.00 Aligned_cols=68 Identities=44% Similarity=0.636 Sum_probs=64.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||+||+||.+|+.||++.
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTR--DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 479999999999 89999999999999999999999877889999999999999999999999999865
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.7e-21 Score=204.66 Aligned_cols=68 Identities=41% Similarity=0.643 Sum_probs=64.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G 70 (380)
T PRK14297 3 SKDYYEVLGLEK--GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70 (380)
T ss_pred CCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence 369999999999 89999999999999999999999877889999999999999999999999999864
No 15
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.2e-21 Score=204.15 Aligned_cols=66 Identities=47% Similarity=0.594 Sum_probs=63.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||++|+.||++.
T Consensus 3 ~d~y~iLgv~~--~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSR--NASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 69999999999 899999999999999999999997 5789999999999999999999999999864
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.8e-21 Score=204.61 Aligned_cols=67 Identities=40% Similarity=0.569 Sum_probs=63.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||++|+.||++.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 69 (380)
T PRK14276 3 NTEYYDRLGVSK--DASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69 (380)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence 379999999999 899999999999999999999997 4789999999999999999999999999864
No 17
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.1e-21 Score=205.39 Aligned_cols=68 Identities=43% Similarity=0.571 Sum_probs=64.2
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+.+|||+||||++ +|+.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 3 EKRDYYEVLGVDR--NADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred CcCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 4589999999999 9999999999999999999999974 789999999999999999999999999964
No 18
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-21 Score=201.85 Aligned_cols=72 Identities=43% Similarity=0.610 Sum_probs=68.7
Q ss_pred HHhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 435 ril~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.++..+|||+||||++ +|+..|||+||||||++||||||+++|.|.+.|++|+.|||||+||++|+.||+++
T Consensus 11 ~v~~~rDfYelLgV~k--~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPK--NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred hhhcCCCHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 4556699999999999 99999999999999999999999999999999999999999999999999999976
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2e-21 Score=205.73 Aligned_cols=67 Identities=46% Similarity=0.640 Sum_probs=63.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||++|+.||++.
T Consensus 4 ~~d~y~iLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSK--DASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 379999999999 899999999999999999999997 4789999999999999999999999999864
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.6e-21 Score=204.47 Aligned_cols=68 Identities=43% Similarity=0.595 Sum_probs=64.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||+||+||.+|+.||++.
T Consensus 3 ~~~~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g 70 (373)
T PRK14301 3 QRDYYEVLGVSR--DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFG 70 (373)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence 379999999999 89999999999999999999999877889999999999999999999999999864
No 21
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.8e-21 Score=201.99 Aligned_cols=67 Identities=42% Similarity=0.571 Sum_probs=63.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~~~y~iLgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 69 (376)
T PRK14280 3 KRDYYEVLGVSK--SASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFG 69 (376)
T ss_pred CCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence 379999999999 899999999999999999999997 4789999999999999999999999999964
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.4e-21 Score=201.49 Aligned_cols=68 Identities=49% Similarity=0.706 Sum_probs=64.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSR--NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 479999999999 89999999999999999999999877889999999999999999999999999864
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=9.1e-21 Score=200.85 Aligned_cols=66 Identities=44% Similarity=0.601 Sum_probs=62.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+|||+||||++ +|+.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~d~Y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g 68 (382)
T PRK14291 3 KDYYEILGVSR--NATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFG 68 (382)
T ss_pred CCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Confidence 79999999999 8999999999999999999999974 789999999999999999999999999864
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=7.3e-21 Score=202.13 Aligned_cols=67 Identities=43% Similarity=0.661 Sum_probs=64.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||+||+.||++.
T Consensus 1 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSK--TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 48999999999 89999999999999999999999877889999999999999999999999999865
No 25
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.84 E-value=2.4e-21 Score=208.03 Aligned_cols=123 Identities=30% Similarity=0.462 Sum_probs=89.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhHH--------
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~e-------- 511 (591)
+|||+||||++ +||.+|||+|||+||++||||||++ .++|++|++||+||+||+||+.||++....
T Consensus 28 ~d~Y~vLGV~~--~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~ 101 (421)
T PTZ00037 28 EKLYEVLNLSK--DCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA 101 (421)
T ss_pred hhHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCc
Confidence 79999999999 8999999999999999999999852 489999999999999999999999864321
Q ss_pred HHHHHHhhhhccccCCCCCCCCCCCCC---CCCCC----------------CCCCcccccccccccccccceeeeccccc
Q 007732 512 ELLDYFRRFQSASQKNGRHGFFGSGYA---RSEAD----------------CDDPFGESRRIACKKCNNFHVWIETKKSK 572 (591)
Q Consensus 512 e~~~~f~~f~~~~~~~g~~gffg~gf~---~s~~~----------------~e~~~~~sr~I~C~~C~Gtg~~~~T~~~~ 572 (591)
+..+.|..| |+++.. +..+. ....+.+.+.+.|+.|.|+| . ..
T Consensus 102 d~~d~f~~~------------Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G-----~-~~ 163 (421)
T PTZ00037 102 DASDLFDLI------------FGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHG-----G-PK 163 (421)
T ss_pred chhhhHHHh------------hccccccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCC-----C-CC
Confidence 111222222 111100 00111 12346678899999999987 2 22
Q ss_pred ccccccccccceeE
Q 007732 573 ASARWCQVFIFAFC 586 (591)
Q Consensus 573 skar~C~~C~GsF~ 586 (591)
....+|..|+|+..
T Consensus 164 ~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 164 DAFVDCKLCNGQGI 177 (421)
T ss_pred CCCccCCCCCCCCe
Confidence 35677888888764
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.8e-20 Score=198.69 Aligned_cols=68 Identities=46% Similarity=0.666 Sum_probs=64.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||++|||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||++.
T Consensus 4 ~~~~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSK--TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 479999999999 89999999999999999999999877889999999999999999999999999864
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3e-20 Score=197.91 Aligned_cols=67 Identities=46% Similarity=0.671 Sum_probs=64.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g 69 (397)
T PRK14281 3 RDYYEVLGVSR--SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69 (397)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 69999999999 89999999999999999999999877889999999999999999999999999864
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=4.3e-20 Score=194.56 Aligned_cols=67 Identities=42% Similarity=0.635 Sum_probs=63.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p-~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +|+.+|||+|||+||++||||++++++ .|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 3 KDYYKILGVDR--NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence 69999999999 899999999999999999999998654 79999999999999999999999999854
No 29
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.81 E-value=8.3e-20 Score=191.19 Aligned_cols=65 Identities=43% Similarity=0.641 Sum_probs=61.8
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 441 DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
|||+||||++ +|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||++.
T Consensus 1 d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 65 (354)
T TIGR02349 1 DYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFG 65 (354)
T ss_pred ChHHhCCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence 7999999999 899999999999999999999997 5778999999999999999999999999864
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=8.1e-20 Score=193.04 Aligned_cols=66 Identities=39% Similarity=0.532 Sum_probs=62.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+|||+||||++ +||.+|||+|||++|++||||+++ ++.++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSK--TASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 69999999999 899999999999999999999997 4678999999999999999999999999964
No 31
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.9e-19 Score=190.31 Aligned_cols=67 Identities=43% Similarity=0.599 Sum_probs=63.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.+.
T Consensus 2 ~~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 2 AADYYEILGVSR--DADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CCChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 369999999999 899999999999999999999997 4779999999999999999999999999854
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.4e-20 Score=192.15 Aligned_cols=66 Identities=41% Similarity=0.598 Sum_probs=62.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||++.
T Consensus 2 ~d~y~~Lgv~~--~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSR--TASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 59999999999 899999999999999999999997 5789999999999999999999999999864
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.7e-19 Score=179.86 Aligned_cols=68 Identities=41% Similarity=0.577 Sum_probs=64.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhH
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ 510 (591)
.|||+||||++ +|+..|||+||++||++||||.|.. ++|.++|++|.+|||+|+|++||+.||..+..
T Consensus 43 ~d~Y~vLgv~~--~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSR--NATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCC--CCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 49999999999 9999999999999999999999985 59999999999999999999999999997654
No 34
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-17 Score=169.62 Aligned_cols=70 Identities=46% Similarity=0.680 Sum_probs=66.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhH
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ 510 (591)
..|||++|||+. +++..+||+|||+.|++|||||||++|.|.+.|+.+.+||+||+|+.+|..||..++.
T Consensus 4 ~~dyY~lLgi~~--~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISE--DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 579999999999 8999999999999999999999999999999999999999999999999999997643
No 35
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.7e-17 Score=167.73 Aligned_cols=67 Identities=37% Similarity=0.550 Sum_probs=63.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +||.+|||+|||+||++||||+|+ ++.++++|++|++||++|+||++|+.||++.
T Consensus 3 ~~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g 69 (291)
T PRK14299 3 YKDYYAILGVPK--NASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYG 69 (291)
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 479999999999 899999999999999999999997 5789999999999999999999999999864
No 36
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.8e-17 Score=166.49 Aligned_cols=67 Identities=40% Similarity=0.644 Sum_probs=64.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|+|+|||+++ +|+.++|||+||+|+++||||+++++|++.++|++||+||+||+||.||..||+++
T Consensus 31 ~~LYdVLgl~k--~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g 97 (279)
T KOG0716|consen 31 LDLYDVLGLPK--TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYG 97 (279)
T ss_pred hHHHHHhCCCc--ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhh
Confidence 68999999999 99999999999999999999999988999999999999999999999999999964
No 37
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.67 E-value=6.8e-17 Score=129.33 Aligned_cols=63 Identities=40% Similarity=0.713 Sum_probs=59.5
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHHhhhhhhHHhhh
Q 007732 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYD 505 (591)
Q Consensus 441 DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p-~A~e~Fk~I~eAYEVLsDp~KR~~YD 505 (591)
|||+||||++ +++.++||++|+++++++|||+++.++ .+++.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~--~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPP--DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTT--TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCC--CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999 899999999999999999999987654 58999999999999999999999998
No 38
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-16 Score=169.69 Aligned_cols=67 Identities=42% Similarity=0.619 Sum_probs=62.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhhhH
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~ 507 (591)
.+.||+||||.+ +|+..+||++||+|||+|||||||+. .+|++.|+.|+.||+|||||+.|+.||..
T Consensus 7 ~~c~YE~L~v~~--~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~h 74 (508)
T KOG0717|consen 7 KRCYYEVLGVER--DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSH 74 (508)
T ss_pred hhHHHHHhcccc--cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence 378999999999 89999999999999999999998755 67999999999999999999999999974
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.61 E-value=5.8e-16 Score=159.86 Aligned_cols=67 Identities=33% Similarity=0.520 Sum_probs=63.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|||+||||++ +++.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKP--TDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 379999999999 899999999999999999999986 4689999999999999999999999999864
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2e-15 Score=161.80 Aligned_cols=68 Identities=37% Similarity=0.572 Sum_probs=62.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~---p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||.+|+|++ +|+.+|||+|||++++.|||||+.++ ..|++.|++|++|||||+||++|+.||.+.
T Consensus 8 e~e~Ya~LNlpk--dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G 78 (546)
T KOG0718|consen 8 EIELYALLNLPK--DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYG 78 (546)
T ss_pred hhhHHHHhCCCc--ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 368999999999 99999999999999999999999643 348899999999999999999999999753
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.56 E-value=4.4e-15 Score=116.87 Aligned_cols=59 Identities=49% Similarity=0.756 Sum_probs=54.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHHhhhhhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-NEKAVEAFKKLQNAYEVLFDSFK 500 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~-~p~A~e~Fk~I~eAYEVLsDp~K 500 (591)
.|||+||||++ +++.++||++|+++++++|||++++ .+.+++.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~--~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999 8999999999999999999999975 57899999999999999999853
No 42
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.9e-15 Score=138.63 Aligned_cols=68 Identities=41% Similarity=0.682 Sum_probs=64.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH-HHHHHHHHHHHHHHhhhhhhHHhhhhH
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-AVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~-A~e~Fk~I~eAYEVLsDp~KR~~YD~~ 507 (591)
...+||+||||++ +|+.+|||++||++|+++|||+++.++. +++.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~--~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPP--NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 3479999999998 8999999999999999999999998775 999999999999999999999999983
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.55 E-value=4e-15 Score=170.50 Aligned_cols=69 Identities=32% Similarity=0.391 Sum_probs=64.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
..++||+||||++ +|+.++||+|||+||++|||||+++ +.|.++|++|++||+||+||.+|+.||+++.
T Consensus 571 ~d~dYYdILGVs~--dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGV--NADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 4579999999999 9999999999999999999999986 4788999999999999999999999998643
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.53 E-value=1.5e-14 Score=111.73 Aligned_cols=55 Identities=44% Similarity=0.680 Sum_probs=51.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 007732 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 497 (591)
Q Consensus 441 DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsD 497 (591)
|||++|||++ +++.++||++||++++++|||++++.+.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~--~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999 899999999999999999999997547789999999999999986
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-14 Score=145.49 Aligned_cols=68 Identities=38% Similarity=0.626 Sum_probs=62.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~--~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+|+|+||||.+ +|+..+||+||++||+++|||+++ ...+|++.|++|+.||+||+|.++|+.||+..
T Consensus 13 ~~d~YevLGVer--~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG 82 (264)
T KOG0719|consen 13 KKDLYEVLGVER--DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG 82 (264)
T ss_pred ccCHHHHhhhcc--cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 469999999999 999999999999999999999994 23568999999999999999999999999854
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=4.9e-14 Score=147.71 Aligned_cols=75 Identities=33% Similarity=0.446 Sum_probs=66.1
Q ss_pred HHHHHhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCch---HHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 432 EVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 432 ev~ril~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p---~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.+......+|||+||||.+ +|+..||.|||||+|.+||||...+.+ .|+.+|..|..|-|||+||++|+.||+..
T Consensus 386 rlkkqs~kRDYYKILGVkR--nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 386 RLKKQSGKRDYYKILGVKR--NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HHHHHhccchHHHHhhhcc--cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 3444455689999999999 999999999999999999999997543 48899999999999999999999999853
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.9e-13 Score=135.30 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=64.3
Q ss_pred hCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 437 l~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
....|+||||||++ .+++.|||||||+|++++||||++...+.++.|..|++||+.|+|+..|..|..+..
T Consensus 96 ~~~fDPyEILGl~p--gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 96 RQKFDPYEILGLDP--GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hhcCCcHHhhCCCC--CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 34479999999999 899999999999999999999998556677889999999999999999999998754
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=2.7e-13 Score=130.23 Aligned_cols=69 Identities=28% Similarity=0.446 Sum_probs=60.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH-----HHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||++|||++..++|.++||++||++++++|||++...+. |.+.|+.|++||++|+||.+|+.|+-.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 38999999999666899999999999999999999864432 5678999999999999999999998644
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.41 E-value=2.2e-13 Score=153.64 Aligned_cols=66 Identities=35% Similarity=0.545 Sum_probs=62.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+|||+||||++ +|+.++||++||+|+++||||++++ +.+.++|++|++||++|+||.+|+.||.+.
T Consensus 2 ~DYYeVLGVs~--dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDR--DADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 69999999999 8999999999999999999999975 788899999999999999999999999864
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=5.5e-13 Score=127.76 Aligned_cols=69 Identities=32% Similarity=0.458 Sum_probs=59.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH---HHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~---A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||++|||++..++|.++|+++||++++++|||++..... +.+.+..|++||++|+||.+|+.|+-.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 68999999999666899999999999999999999864322 3356889999999999999999998754
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.38 E-value=3.6e-13 Score=127.83 Aligned_cols=64 Identities=27% Similarity=0.439 Sum_probs=58.3
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 440 ~DyYeILGV~~~~~A--s~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
..+|+||||++ +| |.++||+|||++|+++||||+++ +++|++|++||++|+|+.+|..||....
T Consensus 5 ~~l~~vLGl~~--~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPR--SAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 45799999999 89 99999999999999999999753 5799999999999999999999998643
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=7e-13 Score=128.15 Aligned_cols=70 Identities=33% Similarity=0.468 Sum_probs=61.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHH-----HHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKA-----VEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A-----~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
.|||++|||++..+++..+||++||++++++|||+++..+.+ .+.+..||+||++|+||.+|+.|+-.+.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 699999999997678999999999999999999998755443 3446899999999999999999996543
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=9.1e-13 Score=127.15 Aligned_cols=72 Identities=28% Similarity=0.360 Sum_probs=63.8
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH-----HHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
...|||++|||++..+.+..+|+++||++++++|||++.+.+. +.+.|..||+||++|+||.+|+.|+-.+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3579999999999777999999999999999999999865433 56789999999999999999999997554
No 54
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.2e-12 Score=137.69 Aligned_cols=72 Identities=39% Similarity=0.637 Sum_probs=66.4
Q ss_pred HHhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 435 ril~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
+..+-+|||+|||+.+ +++.+|||+|||++|+.+|||++.++ .+++.+|+++.+||.+|+||.+|..||...
T Consensus 368 kkSkRkd~ykilGi~~--~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISR--NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HHhhhhhHHHHhhhhh--hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 4455689999999999 89999999999999999999999877 789999999999999999999999999753
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4e-12 Score=124.46 Aligned_cols=69 Identities=43% Similarity=0.598 Sum_probs=61.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
..|||+||+|++ +|+.+|||+|||++|+++||||++.. ..|+++|++|.+||++|+||.+|..||++..
T Consensus 2 ~~d~~~~l~i~~--~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIAR--SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccc--cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 479999999998 78888999999999999999998754 2466689999999999999999999998654
No 56
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.3e-11 Score=119.60 Aligned_cols=88 Identities=36% Similarity=0.517 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHhCC------CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHH
Q 007732 417 VPSTSGDDSEMTSEDEVVRLLNC------TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQ 489 (591)
Q Consensus 417 ~psts~~ds~~ts~~ev~ril~~------~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~ 489 (591)
..+....++.+|+.++++|++.+ .|+|+||.|.| ..+.++||+.||+|++.+|||||+++ +.|..+|..|.
T Consensus 24 vk~~ek~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdp--ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivk 101 (250)
T KOG1150|consen 24 VKSIEKRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDP--EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVK 101 (250)
T ss_pred HHhhhhhhcccCcHHHHHHHhcCCccccccChHHHHhcCC--CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHH
Confidence 44567778999999999999995 38999999999 89999999999999999999999988 78999999999
Q ss_pred HHHHHhhhhhhHHhhhh
Q 007732 490 NAYEVLFDSFKRKAYDD 506 (591)
Q Consensus 490 eAYEVLsDp~KR~~YD~ 506 (591)
+||..|-|+..|..-+.
T Consensus 102 KA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 102 KAYKLLENDKIRKRCLD 118 (250)
T ss_pred HHHHHHhCHHHHHHHHH
Confidence 99999999987766554
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.8e-12 Score=127.04 Aligned_cols=70 Identities=33% Similarity=0.558 Sum_probs=64.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhHHH
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ee 512 (591)
.|.|+||||.+ +++..||+||||+||+++|||++++ +++.+.|+.|..|||+|.|.+.|..||-.+..++
T Consensus 33 enCYdVLgV~R--ea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 33 ENCYDVLGVAR--EANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred hhHHHHhhhhh--hccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 68999999999 8899999999999999999999984 7778999999999999999999999997665543
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.10 E-value=8.8e-11 Score=120.04 Aligned_cols=57 Identities=39% Similarity=0.519 Sum_probs=51.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCC---c----hHHHHHHHHHHHHHHHhhhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N----EKAVEAFKKLQNAYEVLFDS 498 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~---~----p~A~e~Fk~I~eAYEVLsDp 498 (591)
.|+|+||||++ ++|.+|||++||+|+++||||++.+ + +.|+++|++|++||++|+..
T Consensus 200 ~~ay~vLgv~~--~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSE--SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999 8999999999999999999999742 1 35889999999999999853
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.08 E-value=1e-10 Score=106.65 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=46.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 496 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLs 496 (591)
.++|+||||++ +++.+|||++||+|++++|||+.. + .+.|++|++|||+|.
T Consensus 65 ~eAy~ILGv~~--~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISP--TASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 57899999999 899999999999999999999963 3 578999999999985
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.01 E-value=6.3e-10 Score=107.59 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=61.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-----HHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p-----~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
.|||++||||+..+.+..+++++||++.+++|||+....+ .|.+.-..||+||.+|+||-+|+.|--.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 6999999999988899999999999999999999985543 245568899999999999999999976443
No 61
>PHA02624 large T antigen; Provisional
Probab=99.00 E-value=3e-10 Score=127.04 Aligned_cols=59 Identities=25% Similarity=0.460 Sum_probs=55.4
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhh
Q 007732 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY 504 (591)
Q Consensus 440 ~DyYeILGV~~~~~A--s~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~Y 504 (591)
.++|++|||++ +| +.++||+|||++|+++||||++ + +++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~--~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPM--AAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 58999999999 89 9999999999999999999974 2 68999999999999999999998
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.85 E-value=4.1e-09 Score=100.29 Aligned_cols=57 Identities=30% Similarity=0.402 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCch-----HHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 453 NVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 453 ~As~eeIKKAYRKLAlk~HPDKn~~~p-----~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
+.+..+|+++||++++++|||+.+... .+.+.|..|++||++|+||.+|+.|+-.+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 468899999999999999999975432 266889999999999999999999997654
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.5e-09 Score=115.36 Aligned_cols=68 Identities=29% Similarity=0.452 Sum_probs=61.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCC-----chHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~-----~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
--|+|||||++. +++..|||++||+|+.|+||||.+. ..+-++.+++|++||+.|+|...|..|-.++
T Consensus 97 ~fDPyEILGI~~--~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 97 GFDPYEILGIDQ--DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred CCChHHhhcccC--CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 369999999999 8999999999999999999999864 1457799999999999999999999998753
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.4e-08 Score=101.27 Aligned_cols=68 Identities=38% Similarity=0.475 Sum_probs=60.3
Q ss_pred CCCcccccCcccCC-CCCHHHHHHHHHHHHHhhCCCCC--CCchHHHHHHHHHHHHHHHhhhhhhHHhhhh
Q 007732 439 CTDHYSALGLSRFE-NVDVSILKREYRKKAMLVHPDKN--MGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (591)
Q Consensus 439 ~~DyYeILGV~~~~-~As~eeIKKAYRKLAlk~HPDKn--~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~ 506 (591)
..|+|.+|||+.+. .+++.+|.++.++...+||||+. .++-...+.|+.|+.||+||+|+.+|.+||.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS 112 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence 36999999999763 48899999999999999999997 3345678999999999999999999999996
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.2e-06 Score=101.90 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=47.3
Q ss_pred CCcccccCcccCC--CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 007732 440 TDHYSALGLSRFE--NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 497 (591)
Q Consensus 440 ~DyYeILGV~~~~--~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsD 497 (591)
.+-|+||.|+-.. ..+.+.|||+|+|||.+|||||| |+..+.|.++++|||.|+.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHH
Confidence 5789999998531 23458899999999999999999 4678999999999999993
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00013 Score=74.23 Aligned_cols=57 Identities=25% Similarity=0.510 Sum_probs=50.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-Hhhhhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYE-VLFDSF 499 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYE-VLsDp~ 499 (591)
..+|.+|||.. .|+.++++.+|.+|++++|||... ++...+.|.+|.+||. ||+..-
T Consensus 47 ~e~fril~v~e--~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~~~ 104 (342)
T KOG0568|consen 47 MECFRILGVEE--GADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQEKF 104 (342)
T ss_pred HHHHHHhcccc--cCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHHHH
Confidence 46899999999 899999999999999999999985 3556788999999997 887543
No 67
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00027 Score=68.08 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=61.0
Q ss_pred HhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCC-----chHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 436 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 436 il~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~-----~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
+....+||+++|.......+++-++.-|.-..+++|||+... ...|.+...+|++||.+|.||-+|+.|--.+.
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345578999999887666788888889999999999999532 13577889999999999999999999976443
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0011 Score=60.42 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=42.5
Q ss_pred ccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 007732 443 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (591)
Q Consensus 443 YeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp 498 (591)
-.||||.+ +++.+.||+|+|+.-+..|||+.. +|- .-.+|+||+++|...
T Consensus 59 ~lIL~v~~--s~~k~KikeaHrriM~~NHPD~GG-SPY---lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTP--SLDKDKIKEAHRRIMLANHPDRGG-SPY---LASKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCc--cccHHHHHHHHHHHHHcCCCcCCC-CHH---HHHHHHHHHHHHhcc
Confidence 46899999 899999999999999999999995 443 234799999999754
No 69
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=96.57 E-value=0.00072 Score=60.24 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=36.3
Q ss_pred cccccccccccccceeeecccccccccccccccceeEEEe
Q 007732 550 ESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCTYM 589 (591)
Q Consensus 550 ~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay~ 589 (591)
..+.+.|++|++.|.++.|.+.+..+++|++|+....|.+
T Consensus 2 a~n~i~C~~C~~~H~r~~t~r~~~~AR~C~~C~~~H~Ak~ 41 (94)
T PF14901_consen 2 ASNTIRCDKCGGKHKRIETDRPPSAARYCQDCKIRHPAKE 41 (94)
T ss_pred ccceeechhhCCeeeeEEecCchhhhHhHHHhhhhccccc
Confidence 4578999999999999999999999999999999887753
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0037 Score=60.51 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=53.5
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH-----HHHHHHHHHHHHHHhhhhhhHHhhhhH
Q 007732 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (591)
Q Consensus 441 DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYEVLsDp~KR~~YD~~ 507 (591)
|++...|.++....+.+.++..|+.+.+.+|||+....+. +-+.+..++.||.+|.||-+|..|--.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4566667776445567889999999999999999864433 335799999999999999999999653
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.89 E-value=0.0077 Score=66.68 Aligned_cols=42 Identities=33% Similarity=0.501 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCch---H----HHHHHHHHHHHHHH
Q 007732 453 NVDVSILKREYRKKAMLVHPDKNMGNE---K----AVEAFKKLQNAYEV 494 (591)
Q Consensus 453 ~As~eeIKKAYRKLAlk~HPDKn~~~p---~----A~e~Fk~I~eAYEV 494 (591)
=.+.++|||+|||..|.+||||.+..+ . |++.|..+++|++.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999986542 2 55666666666654
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.012 Score=57.08 Aligned_cols=54 Identities=35% Similarity=0.538 Sum_probs=46.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-------EKAVEAFKKLQNAYEVL 495 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-------p~A~e~Fk~I~eAYEVL 495 (591)
.+.|.+|++.. .++..+||++|+++....|||+-... ..+.+++++|++||+-+
T Consensus 113 ~~~l~~l~~~~--~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEI--KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCch--hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999 88999999999999999999986321 35788999999999753
No 73
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=90.97 E-value=0.067 Score=56.44 Aligned_cols=32 Identities=19% Similarity=0.543 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHH
Q 007732 259 SVIAMVGMFKFLMVLVVAALV-----AFFIGFALALV 290 (591)
Q Consensus 259 s~~s~~~~~~~l~~~~~a~~~-----~~~~g~~~~~~ 290 (591)
|=....|++.+.+.+.++++. +.|+|+.+-+|
T Consensus 78 CPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l 114 (381)
T PF05297_consen 78 CPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFL 114 (381)
T ss_dssp -------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 444556666665555555443 34666554444
No 74
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=90.66 E-value=0.65 Score=43.71 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=39.2
Q ss_pred ccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhh
Q 007732 443 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 500 (591)
Q Consensus 443 YeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~K 500 (591)
..||||++ ..+.++|.+.|.+|-...+|++.+ + .-.-.+|..|.|.|..+-+
T Consensus 61 ~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGG-S---fYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 61 RQILNVKE--ELSREEIQKRYKHLFKANDPSKGG-S---FYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHT--G----SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCC-C---HHHHHHHHHHHHHHHHHHH
Confidence 67899999 789999999999999999999874 2 4556789999999886553
No 75
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=87.92 E-value=6.7 Score=38.66 Aligned_cols=63 Identities=16% Similarity=0.342 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhc----chhhHHHHHHHHhhhhheeeehhhhhHhh
Q 007732 289 LVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMYSIYCAWTYVGWLGLLL 351 (591)
Q Consensus 289 ~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~----~h~r~~~~~~~~y~vy~~~~~~gwlg~~L 351 (591)
++|.+++--+++.+-|.+|+.....+++|++--+ .|+|=..-++..|++|++..-+.++=.++
T Consensus 61 ~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~~p~~~ 127 (186)
T PF09605_consen 61 FLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPYLPIWF 127 (186)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455555556678888889999888888876543 56666667888999999987766665555
No 76
>PRK10263 DNA translocase FtsK; Provisional
Probab=85.04 E-value=5.5 Score=49.81 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=5.8
Q ss_pred hhhHHHHHHHhh
Q 007732 306 FWTTFFVIFLGG 317 (591)
Q Consensus 306 fw~t~~~~~~gg 317 (591)
+|+.+++++.|.
T Consensus 170 llLIGLiLlTgl 181 (1355)
T PRK10263 170 VWAAGLTLFTGW 181 (1355)
T ss_pred HHHHHHHHHHhh
Confidence 455555444443
No 77
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=80.83 E-value=4.5 Score=35.53 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007732 268 KFLMVLVVAALVAFFIGFALALVVVALSGTI 298 (591)
Q Consensus 268 ~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~ 298 (591)
.+++.+.++++++.++|.....+++|+++.+
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l 41 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLLLYL 41 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455667777778888888777777665543
No 78
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=79.26 E-value=1.9 Score=45.51 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCC----chHHHHHHHHHHHHHHHhhhhhhHHhhhh
Q 007732 454 VDVSILKREYRKKAMLVHPDKNMG----NEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (591)
Q Consensus 454 As~eeIKKAYRKLAlk~HPDKn~~----~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~ 506 (591)
++..+|..+|++.++..|||+-.. .-.-++.|++|.+||++|.+.++|..+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 577899999999999999998731 12456779999999999999776666665
No 79
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=78.33 E-value=25 Score=41.49 Aligned_cols=122 Identities=14% Similarity=0.223 Sum_probs=62.7
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh---hhh
Q 007732 239 DSFMRMGTTSFFSVIWCSILSVIAMVGM--------FKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG---SFW 307 (591)
Q Consensus 239 ~s~~~~g~~~~~~i~w~~~~s~~s~~~~--------~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~---~fw 307 (591)
.+-+++=-.-++..+-..+++++.|.+. .+++++.....++...+...++++.+.++.+.++-+++ ++|
T Consensus 299 ~~~~~~~~~~l~~~~~l~i~~l~l~~iv~~~~~~~~~~l~p~a~~~~l~~~lv~~r~~i~~s~~~~i~~~~~~~~~~~~~ 378 (700)
T COG1480 299 KSPLKLRNSLLLLYLSLAILTLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIFSSSMIAIALLYLFGGSYNSE 378 (700)
T ss_pred ccCHHhhhhHHHHHHHHHHHHHHHHhccccccchhhhhccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccchhHH
Confidence 3333333333444444444444444433 34445555555666666777777777777777777776 567
Q ss_pred hHHHHHHHh--hhhhhcchhhH-HH-----HHHHHhhhhhe----eeehhhhhHhhhhccccccH
Q 007732 308 TTFFVIFLG--GLAFKFTHERL-AL-----FITTMYSIYCA----WTYVGWLGLLLALNLSFVSS 360 (591)
Q Consensus 308 ~t~~~~~~g--g~~f~~~h~r~-~~-----~~~~~y~vy~~----~~~~gwlg~~Ls~nlsfls~ 360 (591)
++.+.++-| ..++.-++-|- .+ .++.++.++.+ .+-.-|.+..+..-.+|+|-
T Consensus 379 ~~~~~l~s~~~~~~~l~~~s~rs~i~~~g~~~~~~~m~~~l~l~~~~~~~~~~~~~~~~~~flsG 443 (700)
T COG1480 379 IALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFLSG 443 (700)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 776666653 33333333332 21 22222333333 55556666666655555543
No 80
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=78.30 E-value=19 Score=33.64 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhcchhhH
Q 007732 290 VVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERL 327 (591)
Q Consensus 290 ~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~~h~r~ 327 (591)
.++++++++++|+.+. +.+.+..++.+.+..+-|+=+
T Consensus 100 ~~~~~~~~~~l~~~~~-~~~l~~~l~~~~~lvl~HA~~ 136 (153)
T PF03208_consen 100 LALLIVSILLLFFTSA-GLTLFWSLGASVLLVLLHASF 136 (153)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHh
Confidence 3555666667777555 444445555555566666543
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.24 E-value=10 Score=36.60 Aligned_cols=9 Identities=33% Similarity=0.268 Sum_probs=4.1
Q ss_pred HHHHHHhhh
Q 007732 310 FFVIFLGGL 318 (591)
Q Consensus 310 ~~~~~~gg~ 318 (591)
+++++.+|+
T Consensus 49 g~vL~~~g~ 57 (191)
T PF04156_consen 49 GVVLLSLGL 57 (191)
T ss_pred HHHHHHHHH
Confidence 344444443
No 82
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=76.39 E-value=1.7 Score=35.80 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=20.7
Q ss_pred cccccccccccceeeeccc----ccccccccccccceeEE
Q 007732 552 RRIACKKCNNFHVWIETKK----SKASARWCQVFIFAFCT 587 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~----~~skar~C~~C~GsF~a 587 (591)
....|+.|+|+|....... .-.....|+.|+|....
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~ 53 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKI 53 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeE
Confidence 3457888888886554431 22445668888887654
No 83
>PRK10263 DNA translocase FtsK; Provisional
Probab=74.42 E-value=15 Score=46.09 Aligned_cols=9 Identities=0% Similarity=-0.031 Sum_probs=3.5
Q ss_pred hhhhhHHhh
Q 007732 195 YNAHDYVSR 203 (591)
Q Consensus 195 ~~~~~~~~~ 203 (591)
+-...++..
T Consensus 65 GiVGA~LAD 73 (1355)
T PRK10263 65 GMPGAWLAD 73 (1355)
T ss_pred chHHHHHHH
Confidence 333444443
No 84
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=73.38 E-value=20 Score=41.11 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHh
Q 007732 247 TSFFSVIWCSILSVIAMVGMF---K-FLMVLVVAALVAFFIG 284 (591)
Q Consensus 247 ~~~~~i~w~~~~s~~s~~~~~---~-~l~~~~~a~~~~~~~g 284 (591)
.++.+++++.+..+++..+.- | +++++.++++++.|+-
T Consensus 51 ~s~~~~~~~~~~~~~~l~~~~~~~k~~~~~l~~~sa~~~Yf~ 92 (545)
T PRK11598 51 ASMPVVAFSVINIVFTLLSFPWLRRPLACLFILVGAAAQYFM 92 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777776666443 3 3444455555544443
No 85
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=72.77 E-value=39 Score=33.49 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhh----cchhhHHHHHHHHhhhhh-eeeehhhhhHhh
Q 007732 289 LVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK----FTHERLALFITTMYSIYC-AWTYVGWLGLLL 351 (591)
Q Consensus 289 ~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~----~~h~r~~~~~~~~y~vy~-~~~~~gwlg~~L 351 (591)
++|.+++--+++.+-|.+|......+++|++-- ..++|=..-.+..|.+++ .+.-+.++=.++
T Consensus 63 ~~i~~~i~gl~~~~~G~~~~~~~~~ii~gliaeli~~~g~Yks~~~~~ia~~~~~~~~~~g~~~p~~~ 130 (189)
T TIGR02185 63 IFIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIASTGGYKNKRKVTIAYVLFFLLVAMGPILPIWL 130 (189)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566788888987777777664432 245664556677788887 444444544443
No 86
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=70.92 E-value=1.1e+02 Score=30.09 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred HHHHHhhhh-hhhchhhhhhcchhhHHHHHHHHHHHHHHH
Q 007732 225 LLSMLWLDC-TIRGIDSFMRMGTTSFFSVIWCSILSVIAM 263 (591)
Q Consensus 225 ~~~~~w~dc-~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~ 263 (591)
+.+..|.-| ..+.-..-.++.--..|.+.....++.+..
T Consensus 51 l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~ 90 (212)
T cd06181 51 LGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILS 90 (212)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 445555555665555666655555554433
No 87
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=70.44 E-value=16 Score=37.87 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 007732 479 EKAVEAFKKLQNAYEVLFDS 498 (591)
Q Consensus 479 p~A~e~Fk~I~eAYEVLsDp 498 (591)
+.-...++.+.++.+.+.+.
T Consensus 239 ~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 239 NRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666665543
No 88
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=69.39 E-value=2.6 Score=30.86 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=23.5
Q ss_pred ccccccccccceeeecccc--cccccccccccceeEEE
Q 007732 553 RIACKKCNNFHVWIETKKS--KASARWCQVFIFAFCTY 588 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~--~skar~C~~C~GsF~ay 588 (591)
.+.|++|+... ++..... ......|+.|+..|.++
T Consensus 2 ~~~CP~C~~~~-~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 2 RIQCPNCKTSF-RVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EEECCCCCCEE-EeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 46899999965 3332221 23357899999999863
No 89
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=69.35 E-value=2.7 Score=42.03 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=20.9
Q ss_pred ccccccccccceeeecccccccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
...|+.|+|+|..+.+ ...|+.|+|....
T Consensus 99 ~~~C~~C~G~G~~i~~------~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRR------QRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecC------CCCCCCCCCccEE
Confidence 6679999998744332 2569999997543
No 90
>COG4709 Predicted membrane protein [Function unknown]
Probab=69.11 E-value=65 Score=32.70 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=13.1
Q ss_pred hhhhhhcchhhHHHHHHHHHHHH
Q 007732 238 IDSFMRMGTTSFFSVIWCSILSV 260 (591)
Q Consensus 238 ~~s~~~~g~~~~~~i~w~~~~s~ 260 (591)
+..+++||.-+++.++|..+.-+
T Consensus 82 ii~~~~L~~~~v~i~Lpl~~~vi 104 (195)
T COG4709 82 IIALIGLGLLAVIIGLPLLIGVI 104 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666777655433
No 91
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=68.87 E-value=1.1e+02 Score=33.75 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=17.7
Q ss_pred HHHHHhhhhheeeehhhhhHhhh
Q 007732 330 FITTMYSIYCAWTYVGWLGLLLA 352 (591)
Q Consensus 330 ~~~~~y~vy~~~~~~gwlg~~Ls 352 (591)
.+....+++-..+|+||+|++.+
T Consensus 205 ~~l~~~~L~lT~SRg~wl~l~~~ 227 (425)
T TIGR00947 205 LGVNALCLLFTYSRGGWLGLLAA 227 (425)
T ss_pred HHHHHHHHHHhcchhhHHHHHHH
Confidence 44567788889999999986654
No 92
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=67.24 E-value=11 Score=34.72 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCchHH----HHHHHHHHHHHHHhhhh
Q 007732 453 NVDVSILKREYRKKAMLVHPDKNMGNEKA----VEAFKKLQNAYEVLFDS 498 (591)
Q Consensus 453 ~As~eeIKKAYRKLAlk~HPDKn~~~p~A----~e~Fk~I~eAYEVLsDp 498 (591)
..+..++|.|.|.+-+++|||.....|+. ++.++.++.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 35668999999999999999987655553 24466666666666543
No 93
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=66.14 E-value=1.8e+02 Score=30.72 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=15.8
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhhhcch
Q 007732 297 TILLWLYGSFWTTFFVIFLGGLAFKFTH 324 (591)
Q Consensus 297 ~~~lw~y~~fw~t~~~~~~gg~~f~~~h 324 (591)
++++|+| ++++++++|+..-..-+
T Consensus 262 ~lmlw~y----~~~~I~l~Gae~~a~~~ 285 (303)
T COG1295 262 ILLLWLY----ISALIILLGAELNATLS 285 (303)
T ss_pred HHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 5567765 56788888886544433
No 94
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=65.27 E-value=18 Score=33.93 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhH-HHHHHHhhhhhhcchhhHHHHHHHHhhhhhee
Q 007732 287 LALVVVALSGTILLWLYGSFWTT-FFVIFLGGLAFKFTHERLALFITTMYSIYCAW 341 (591)
Q Consensus 287 ~~~~~v~~~~~~~lw~y~~fw~t-~~~~~~gg~~f~~~h~r~~~~~~~~y~vy~~~ 341 (591)
--+++++++.++.+|.|.+.+.. .--+.++|.-+...+.-.++.+.++..+|+..
T Consensus 59 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (153)
T PF03208_consen 59 NPFFLLVLLLVVALWAFIYKSRKENDPIVIGGRKISPRQVLLALLIVSILLLFFTS 114 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcchhccCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 33445555667777888888876 33344556666666666666666666666644
No 95
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=63.83 E-value=1.2e+02 Score=34.06 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=5.4
Q ss_pred hhhhHHHH
Q 007732 206 QQVYPVAL 213 (591)
Q Consensus 206 ~~~~p~v~ 213 (591)
.|.||.+.
T Consensus 54 ~~~wp~~~ 61 (495)
T PRK11644 54 RGYWPVLL 61 (495)
T ss_pred cccchHHH
Confidence 45688765
No 96
>PF13446 RPT: A repeated domain in UCH-protein
Probab=61.89 E-value=12 Score=30.17 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHH
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAM 468 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAl 468 (591)
.+-|++|||++ +.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~--~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDE--DTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCC--CCCHHHHHHHHHHHHH
Confidence 35699999998 8999999999999877
No 97
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=61.69 E-value=1.7e+02 Score=30.83 Aligned_cols=102 Identities=12% Similarity=-0.055 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhch----------hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 214 NHLGHFAKIMLLLSMLWLDCTIRGI----------DSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI 283 (591)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~dc~~rg~----------~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~ 283 (591)
.|+-.+|++..=++.+ +.|| .-..||.-.++.+-+=-.+ +.+.+.-..++..|.++..+...+
T Consensus 58 ~~l~~iGRlAfPiFaf-----VeGfNla~hT~~r~kY~~RL~ifAlIseipf~l--~~~~~~~~NI~fTLalgl~~l~~~ 130 (248)
T PRK13706 58 EWMFLAGRGAFPLFAL-----VWGLNLSRHAHIRQPAINRLWGWGIIAQFAYYL--AGFPWYEGNILFAFAVAAQVLTWC 130 (248)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhccccchHHHHHHHHHHHHHHHHHHHHH--HhcccccCcHHHHHHHHHHHHHHH
Confidence 3667788887776664 7887 3456665554443211000 011222224444555554444444
Q ss_pred hhhHHHH-HHH-HHHHHH-HHHhhhhhhHHHHHHHhhhhhhc
Q 007732 284 GFALALV-VVA-LSGTIL-LWLYGSFWTTFFVIFLGGLAFKF 322 (591)
Q Consensus 284 g~~~~~~-~v~-~~~~~~-lw~y~~fw~t~~~~~~gg~~f~~ 322 (591)
-.....+ +++ +.+++. .++-+..|..+.++|++-+.|-.
T Consensus 131 e~~~~~~~~~~il~~~l~~~~~~~DYg~~gvl~il~fy~~~~ 172 (248)
T PRK13706 131 ETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLAVSHRLYR 172 (248)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3321111 111 111222 22335577788888888886633
No 98
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=58.77 E-value=5.5 Score=32.86 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=20.3
Q ss_pred cccccccccccccccceeeecccccccccccccccce
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFA 584 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~Gs 584 (591)
+.+...+.|+.|+|+|..+ ....|+.|+|.
T Consensus 36 ~~~~~~~~C~~C~G~G~~i-------~~~~C~~C~G~ 65 (66)
T PF00684_consen 36 GVFQMQQTCPKCGGTGKII-------EKDPCKTCKGS 65 (66)
T ss_dssp TTEEEEEE-TTTSSSSEE--------TSSB-SSSTTS
T ss_pred eEEEEEEECCCCcceeeEE-------CCCCCCCCCCc
Confidence 4456788999999998543 24569999985
No 99
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.37 E-value=5.8 Score=43.54 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 007732 457 SILKREYRKK 466 (591)
Q Consensus 457 eeIKKAYRKL 466 (591)
.||++||--|
T Consensus 48 KEI~eAYEVL 57 (371)
T COG0484 48 KEINEAYEVL 57 (371)
T ss_pred HHHHHHHHHh
Confidence 4566666654
No 100
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=57.52 E-value=1.9e+02 Score=27.96 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhc----chhhHHHHHHHHhh
Q 007732 265 GMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMYS 336 (591)
Q Consensus 265 ~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~----~h~r~~~~~~~~y~ 336 (591)
...|+.+...++.++..++|...|++...++.+++.=+.++-....+..++||.+-.. -+.|-.++.+.++.
T Consensus 62 ~~~~~~P~a~~~~l~~~l~~~~~ai~~~~~~sl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~R~~~i~ag~~v 137 (194)
T PF07698_consen 62 YFPYLIPVAAAAMLLTILIDPRLAILASLFLSLLASLLFGFDFEFFLYSLVSGIVAIFSVRRIRSRSDIIKAGLLV 137 (194)
T ss_pred hhhhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999987777777666655555555555555544333 55665555544443
No 101
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=57.42 E-value=1.7e+02 Score=27.36 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhh
Q 007732 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLA 319 (591)
Q Consensus 248 ~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~ 319 (591)
.+++-+++.++++.-+..=+.+....--+.....++|-+.-.+++|...+-. ....|+.+.++++-|.+
T Consensus 33 ~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~~~---~~~~~i~g~~~~~~G~~ 101 (136)
T PF08507_consen 33 SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCLGQ---SILSIIIGLLLFLVGVI 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333334444555556666666666665544433 33344555555554533
No 102
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=57.10 E-value=86 Score=35.90 Aligned_cols=18 Identities=11% Similarity=-0.129 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHhhhhhe
Q 007732 323 THERLALFITTMYSIYCA 340 (591)
Q Consensus 323 ~h~r~~~~~~~~y~vy~~ 340 (591)
+|..+--+++-.+-||+.
T Consensus 179 ~~~~~~~~~~P~~~~~~~ 196 (522)
T PRK09598 179 HAKFLGGLILPWSYSVNT 196 (522)
T ss_pred hHHHHHhhcCcHHHHHHH
Confidence 666665555555555544
No 103
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.20 E-value=5.9 Score=29.50 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=23.3
Q ss_pred ccccccccccceeeecc-cccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETK-KSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~-~~~skar~C~~C~GsF~ 586 (591)
.+.||.|+..+..-... ........|+.|+-.|.
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 47899999976332221 13456788999998875
No 104
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=55.05 E-value=33 Score=34.50 Aligned_cols=38 Identities=8% Similarity=0.161 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 007732 453 NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (591)
Q Consensus 453 ~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp 498 (591)
+|+.|||++|+.++..+|--| ++.-.+|..||+.+.=.
T Consensus 3 ~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHH
Confidence 899999999999999999322 24445799999865433
No 105
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=54.77 E-value=93 Score=28.51 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=8.6
Q ss_pred hhheeeehhhhhHhhh
Q 007732 337 IYCAWTYVGWLGLLLA 352 (591)
Q Consensus 337 vy~~~~~~gwlg~~Ls 352 (591)
-|+--..++|.|.++.
T Consensus 148 ~~gwSf~la~~a~~~~ 163 (172)
T PF13903_consen 148 SYGWSFWLAWVAFILL 163 (172)
T ss_pred EECHHHHHHHHHHHHH
Confidence 4444555566665554
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.52 E-value=4.4e+02 Score=31.59 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=33.4
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 197 AHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRG-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMV 272 (591)
Q Consensus 197 ~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~w~dc~~rg-~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~ 272 (591)
.--.+.+.+|..||. ||+ ||- +|||--=|- -|+|+..|+.-..=++|++++-+-
T Consensus 43 ~d~~~~~r~e~~~p~---wl~-----------------~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~p~~ 97 (697)
T PF09726_consen 43 ADFMLEFRFEYLWPF---WLL-----------------LRSVYDSFKYQGL--AFSVFFVCIAFTSDLICLFFIPVH 97 (697)
T ss_pred HHHHhhhHHHHHHHH---HHH-----------------HHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999996 221 111 122222222 288888888888888998886543
No 107
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=54.21 E-value=2e+02 Score=30.26 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=38.8
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhccchHHHHHhhhhhHHhhhhhhhhHHHHH
Q 007732 155 EKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALN 214 (591)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~ 214 (591)
.|-|.-..++....=-+.++++.++.+-=+=|.++.+.- -+-.++-.+.-.||+-++
T Consensus 62 ~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kf---i~ifigdlirlnWP~Fsr 118 (269)
T KOG4453|consen 62 LKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKF---IHIFIGDLIRLNWPIFSR 118 (269)
T ss_pred hhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHH---HHHHHhHHHHhccHHHHH
Confidence 345666677777777888999999988766666662211 133456677888998764
No 108
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=53.21 E-value=2.4e+02 Score=27.94 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=31.7
Q ss_pred hhhHHHHHHHhhhhhhcchhhHHHHHHHHhhhhheeeehhhhhHhhhhccccccHHHH
Q 007732 306 FWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDAL 363 (591)
Q Consensus 306 fw~t~~~~~~gg~~f~~~h~r~~~~~~~~y~vy~~~~~~gwlg~~Ls~nlsfls~D~L 363 (591)
+|.+...+.+.+.++.+..+|.++.+.| +++.+-.-+.=.+.++--++++..-+++
T Consensus 114 ~~~~~~~~~l~~~~l~l~~~k~~~I~~t--s~~Ga~~i~~giD~f~~~~l~~~~~~~~ 169 (210)
T PF13886_consen 114 FWVLFLCLALVFGLLTLKFQKPFLIVST--SFFGAYAIVLGIDYFVGAGLKYFWLNLW 169 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHhHHHhcCcHHHHHHHHH
Confidence 4555555555566677888886655543 5555555545555555555544333333
No 109
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=52.31 E-value=22 Score=36.64 Aligned_cols=30 Identities=20% Similarity=0.518 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 007732 271 MVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (591)
Q Consensus 271 ~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~ 304 (591)
+++++.+++++|++ +.||=++--+|+|+.+
T Consensus 142 lS~~~lgll~~~~~----laivRlilf~i~w~~~ 171 (224)
T PF03839_consen 142 LSVGALGLLGLFFA----LAIVRLILFLITWFFT 171 (224)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 34444444444443 3333333344556543
No 110
>KOG4800 consensus Neuronal membrane glycoprotein/Myelin proteolipid protein [Function unknown]
Probab=52.17 E-value=78 Score=33.02 Aligned_cols=41 Identities=10% Similarity=0.393 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007732 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVA 293 (591)
Q Consensus 249 ~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~ 293 (591)
+..|=|-+.+++.+++|+++..+ -++...+++|+..|+..|
T Consensus 58 v~ii~~~F~~~~~~wI~ifqyvf----~~iaa~f~~yG~~il~eg 98 (248)
T KOG4800|consen 58 VLIIEQYFSINIVSWICIFQYVF----YGIAAFFFLYGILILAEG 98 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHhhh
Confidence 45566777777777788777543 333445556655555443
No 111
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=52.08 E-value=9.2 Score=28.62 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=23.6
Q ss_pred cccccccccceeeecccccccccccccccceeEEE
Q 007732 554 IACKKCNNFHVWIETKKSKASARWCQVFIFAFCTY 588 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay 588 (591)
-+|+.|+..+ ......+.....|..|++.++++
T Consensus 2 r~C~~Cg~~Y--h~~~~pP~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 2 RICPKCGRIY--HIEFNPPKVEGVCDNCGGELVQR 34 (36)
T ss_dssp EEETTTTEEE--ETTTB--SSTTBCTTTTEBEBEE
T ss_pred cCcCCCCCcc--ccccCCCCCCCccCCCCCeeEeC
Confidence 4699998843 34445677788999999998875
No 112
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.52 E-value=30 Score=38.01 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh----hhhhHHH
Q 007732 249 FFSVIWCSILSVIAMVGM--FKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG----SFWTTFF 311 (591)
Q Consensus 249 ~~~i~w~~~~s~~s~~~~--~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~----~fw~t~~ 311 (591)
+++++=.|++=+|-+.+= +|-+.+ |+++++ ++.+.|.||=+|-..|+|+.- .||+.-=
T Consensus 198 vl~tlaivLFPLWP~~mR~gvyY~si-g~~gfl----~~IlvLaIvRlILF~I~~il~~g~~g~W~FPN 261 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMRQGVYYLSI-GAGGFL----AFILVLAIVRLILFGITWILTGGKHGFWLFPN 261 (372)
T ss_pred HHHHHHHHhcccCcHHHhcceeeeec-chhHHH----HHHHHHHHHHHHHHHHHHHHhCCCCceEeccc
Confidence 455555555555555442 222222 444444 444455666666666777543 3665433
No 113
>PF13994 PgaD: PgaD-like protein
Probab=51.32 E-value=57 Score=30.68 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=16.3
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q 007732 243 RMGTTSFFSVIWCSILSVIAM 263 (591)
Q Consensus 243 ~~g~~~~~~i~w~~~~s~~s~ 263 (591)
|+....+-++.|+.|+.++..
T Consensus 14 r~~~~~lT~~~W~~~~yL~~p 34 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWRP 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677778888999988776654
No 114
>PLN02922 prenyltransferase
Probab=51.22 E-value=47 Score=35.50 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=33.4
Q ss_pred hhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHhh
Q 007732 234 TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAF-FIGFALALVVVALSGTILLWLYG 304 (591)
Q Consensus 234 ~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~-~~g~~~~~~~v~~~~~~~lw~y~ 304 (591)
..||.|..-|-|+.-+.- |--.+..+..+++.+++.+++.. +..-.+.++++|++|+++-|+|-
T Consensus 76 ~~~G~D~~~~~~~~~~~~-------s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt 140 (315)
T PLN02922 76 ADTGVDKNKKESVVNLVG-------SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ 140 (315)
T ss_pred hccCcCcccCCCCCCccc-------CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 579999877766433321 22222222222222222222222 11112567789999999999995
No 115
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=51.21 E-value=12 Score=32.12 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=25.3
Q ss_pred cccccccccceeeeccccc-----ccccccc--cccceeEEEee
Q 007732 554 IACKKCNNFHVWIETKKSK-----ASARWCQ--VFIFAFCTYMW 590 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~-----skar~C~--~C~GsF~ay~~ 590 (591)
..|+.|+..- .+.+.+.. .....|+ .|+.+|++|+-
T Consensus 2 m~CP~Cg~~a-~irtSr~~s~~~~~~Y~qC~N~eCg~tF~t~es 44 (72)
T PRK09678 2 FHCPLCQHAA-HARTSRYITDTTKERYHQCQNVNCSATFITYES 44 (72)
T ss_pred ccCCCCCCcc-EEEEChhcChhhheeeeecCCCCCCCEEEEEEE
Confidence 3599999976 45544332 2334598 99999999985
No 116
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=50.70 E-value=71 Score=31.67 Aligned_cols=38 Identities=18% Similarity=0.492 Sum_probs=26.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHhhhh
Q 007732 282 FIGFALALVVVALSGTILLWLYG---------SFWTTFFVIFLGGLA 319 (591)
Q Consensus 282 ~~g~~~~~~~v~~~~~~~lw~y~---------~fw~t~~~~~~gg~~ 319 (591)
-++++.+-.++|+..+++.|.|. .-|--..+.+++|..
T Consensus 115 ~~~~~~~Pi~~~~~i~~~~w~~r~~~~~~~~~~~~~~~~~~l~~g~~ 161 (186)
T PF12036_consen 115 SLWNTIGPILIGLLILLVSWLYRCRRRRRCYPPSWRRWLFYLLPGII 161 (186)
T ss_pred cchhhHHHHHHHHHHHHHHHheecccCCccCChHHHHHHHHHHHHHH
Confidence 46778888899999999999997 345544444444433
No 117
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=50.35 E-value=1.5e+02 Score=36.09 Aligned_cols=10 Identities=10% Similarity=0.105 Sum_probs=7.5
Q ss_pred cccceeEEEe
Q 007732 580 VFIFAFCTYM 589 (591)
Q Consensus 580 ~C~GsF~ay~ 589 (591)
.|+..++||-
T Consensus 707 ~~~~ky~ayk 716 (810)
T TIGR00844 707 AKKSKYYAYK 716 (810)
T ss_pred ccccceeEEE
Confidence 7777888874
No 118
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=50.31 E-value=1.2e+02 Score=27.03 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 007732 246 TTSFFSVIWCSILSVIAMV 264 (591)
Q Consensus 246 ~~~~~~i~w~~~~s~~s~~ 264 (591)
.|.||-.+|+...-++.-.
T Consensus 41 ~Af~f~~~w~l~r~mw~~~ 59 (108)
T PF10947_consen 41 WAFFFGPLWLLYRKMWLYA 59 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888999988888554
No 119
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=49.56 E-value=9.8 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=22.9
Q ss_pred cccccccccccceeeecccccccccccccccc
Q 007732 552 RRIACKKCNNFHVWIETKKSKASARWCQVFIF 583 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~~~skar~C~~C~G 583 (591)
+..+||.|+|+.-+..+.+...-.-.|..|+.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCGA 33 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCCC
Confidence 35689999998766555545556678999964
No 120
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=49.12 E-value=27 Score=37.50 Aligned_cols=17 Identities=24% Similarity=0.800 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 007732 248 SFFSVIWCSILSVIAMV 264 (591)
Q Consensus 248 ~~~~i~w~~~~s~~s~~ 264 (591)
-||++|||.++|-..|+
T Consensus 72 I~yivlw~~l~Stl~l~ 88 (308)
T PF14800_consen 72 IFYIVLWANLYSTLQLF 88 (308)
T ss_pred HHHHHHHHHHHccchhh
Confidence 46899999999976665
No 121
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=48.73 E-value=2.6e+02 Score=29.01 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=25.5
Q ss_pred hhhhhhHHHHHHHhhhhhhc-chhhHHHHHHHHhhhhheeeehhhhhHhhhhccc
Q 007732 303 YGSFWTTFFVIFLGGLAFKF-THERLALFITTMYSIYCAWTYVGWLGLLLALNLS 356 (591)
Q Consensus 303 y~~fw~t~~~~~~gg~~f~~-~h~r~~~~~~~~y~vy~~~~~~gwlg~~Ls~nls 356 (591)
-..++..+.+++++-+.|-. ++.+-... .-++|+++++++|.+
T Consensus 129 ~~dYg~~Gvlli~~~y~~~~~r~~~~~~~-----------~~~~l~~~~~~ln~~ 172 (224)
T TIGR02755 129 GTSYGIAGLLMLAGALRLYRVRDTEERLA-----------LFACLLLLVPALNLR 172 (224)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhccHHHHH-----------HHHHHHHHHHHhccc
Confidence 44566777778887776532 32222111 224778888888873
No 122
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=47.67 E-value=2.8e+02 Score=34.84 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhhhhhchhhhhhcchhhHHHHHHHHHHHHHH
Q 007732 210 PVALNHLGHFAKIMLLLSML-----WLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIA 262 (591)
Q Consensus 210 p~v~~~~~~~~~~~~~~~~~-----w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s 262 (591)
|.+..|++.+-.++.|++.+ |.-=.+|+|....=++... +.++|-.+|-+.+
T Consensus 11 p~~~~~~~~~~~~~~l~~~v~p~~~~~~~~~~~~~~~~~~~~~~-~sl~~g~~Ll~lA 67 (1094)
T PRK02983 11 PAAAGWTVGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPD-TSLAWAFVLALLA 67 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhcChhhhCCCc-hHHHHHHHHHHHH
Confidence 66777777777777666555 3333445553332222211 4455554444443
No 123
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=47.64 E-value=13 Score=28.60 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=21.9
Q ss_pred ccccccccccceeeecccccccccccccccceeEEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCTY 588 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay 588 (591)
...|+.|+..... ........|+.|+.+++.+
T Consensus 3 ~y~C~~CG~~~~~----~~~~~~~~Cp~CG~~~~~~ 34 (46)
T PRK00398 3 EYKCARCGREVEL----DEYGTGVRCPYCGYRILFK 34 (46)
T ss_pred EEECCCCCCEEEE----CCCCCceECCCCCCeEEEc
Confidence 3579999996532 1223378899999988743
No 124
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=47.39 E-value=36 Score=34.76 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 007732 210 PVALNHLGHFAKIMLL 225 (591)
Q Consensus 210 p~v~~~~~~~~~~~~~ 225 (591)
....+|+.+++.++|+
T Consensus 179 n~~~tW~lR~~G~llm 194 (248)
T PF07787_consen 179 NNTLTWILRFIGWLLM 194 (248)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4456677776665543
No 125
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=47.32 E-value=40 Score=35.31 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=56.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007732 206 QQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGF 285 (591)
Q Consensus 206 ~~~~p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~ 285 (591)
+---|++..|++..|-++.-+++. .++|+-- +--++|.+...|-..=.++.-++--+|+
T Consensus 23 ~~gDg~~fQw~~~~~i~~~g~~v~----~~~~~p~-----------------f~p~amlgG~lW~~gN~~~vpii~~iGL 81 (254)
T PF07857_consen 23 DTGDGFFFQWVMCSGIFLVGLVVN----LILGFPP-----------------FYPWAMLGGALWATGNILVVPIIKTIGL 81 (254)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHH----HhcCCCc-----------------ceeHHHhhhhhhhcCceeehhHhhhhhh
Confidence 333588999999888765433211 1233311 2346777777777666677788889999
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 007732 286 ALALVVVALSGTILLWLYGSF 306 (591)
Q Consensus 286 ~~~~~~v~~~~~~~lw~y~~f 306 (591)
..|++|-+.+-+++=|..+-|
T Consensus 82 glg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 82 GLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998888776
No 126
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=46.99 E-value=14 Score=34.31 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=22.4
Q ss_pred ccccccccccccceeeecccccccccccccccceeEEEeeC
Q 007732 551 SRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCTYMWF 591 (591)
Q Consensus 551 sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay~~~ 591 (591)
.....|+.|+|+|. ..|..|+|+-..-+|.
T Consensus 73 q~~~~C~~C~G~Gk-----------~~C~~C~G~G~~~~~~ 102 (111)
T PLN03165 73 KEVSKCINCDGAGS-----------LTCTTCQGSGIQPRYL 102 (111)
T ss_pred EEEEECCCCCCcce-----------eeCCCCCCCEEEeeee
Confidence 45678888888761 1399999998887774
No 127
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=46.81 E-value=86 Score=31.24 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 007732 266 MFKFLMVLVVAALVAFFIGFALALV 290 (591)
Q Consensus 266 ~~~~l~~~~~a~~~~~~~g~~~~~~ 290 (591)
..++++++|+...++.|+|+..++-
T Consensus 52 ~~~ili~~G~v~~~v~flGc~Ga~~ 76 (237)
T KOG3882|consen 52 PAYILIAVGGVVFLVGFLGCCGALR 76 (237)
T ss_pred chhhhhhhhHHHHHHHHhhhhhhHh
Confidence 3455666666666666666655444
No 128
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=45.98 E-value=96 Score=28.99 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 251 SVIWCSILSVIAMVGMFKFLMVLVVAAL 278 (591)
Q Consensus 251 ~i~w~~~~s~~s~~~~~~~l~~~~~a~~ 278 (591)
+|-|..+++.+|..+..-..+.+.+.+.
T Consensus 61 li~~ai~~~~~s~ll~~l~i~~lf~~~~ 88 (130)
T PF11026_consen 61 LIRRAITLATLSALLVCLVILLLFLSAL 88 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666555554444444444333
No 129
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=45.89 E-value=12 Score=43.50 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=22.4
Q ss_pred cccccccccccccccceeeecccccccccccccccceeEEEe
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCTYM 589 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay~ 589 (591)
...++.++|+.|+|+|.. .-...|+.|+|..-.+.
T Consensus 48 ~~~~~~~pc~~c~gkG~V-------~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 48 LFASFEIPCPKCRGKGTV-------TVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccCCCCCCeeccceeE-------EEEeecccCCCceeEEe
Confidence 446678899999997732 23345666666655443
No 130
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=45.88 E-value=6.8 Score=41.93 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhheeeehhhhhHhhhhc--cccccHHHHHHHHhh
Q 007732 327 LALFITTMYSIYCAWTYVGWLGLLLALN--LSFVSSDALIFFLKS 369 (591)
Q Consensus 327 ~~~~~~~~y~vy~~~~~~gwlg~~Ls~n--lsfls~D~L~~lL~~ 369 (591)
+|.+++.+.+|..+-.+-+|+-+++-+= +=||..-|+.|+...
T Consensus 144 LAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~~ 188 (381)
T PF05297_consen 144 LAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHDQ 188 (381)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666777777778889998775332 347777777787763
No 131
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=45.57 E-value=11 Score=28.96 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=17.7
Q ss_pred cccccccccccceee-ecccccccccccccccc
Q 007732 552 RRIACKKCNNFHVWI-ETKKSKASARWCQVFIF 583 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~-~T~~~~skar~C~~C~G 583 (591)
+..+||.|.|+.-+. .+.+...-.-+|..|++
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCGG 34 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTTB
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCCC
Confidence 356899999987665 55555566778999955
No 132
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.27 E-value=1.6e+02 Score=35.22 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 007732 250 FSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY 303 (591)
Q Consensus 250 ~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y 303 (591)
|=.||-|.|.|-+++=-++.- |+| +-++|+..++-.=+|-+|=|++=|+|
T Consensus 51 ~e~~~p~wl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~d~~~~~~~p~~~~~ 100 (697)
T PF09726_consen 51 FEYLWPFWLLLRSVYDSFKYQ---GLA-FSVFFVCIAFTSDLICLFFIPVHWLF 100 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhh---hhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888877655543 222 22233333333334444445555554
No 133
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=45.24 E-value=1.2e+02 Score=32.31 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhhchhhhhhcchhh
Q 007732 215 HLGHFAKIMLLLSMLW-LDCTIRGIDSFMRMGTTS 248 (591)
Q Consensus 215 ~~~~~~~~~~~~~~~w-~dc~~rg~~s~~~~g~~~ 248 (591)
+.+-.+.+++|++... .+-.+.|-.+.+++|+-+
T Consensus 67 ~~~~~~~l~lL~l~~~~~g~~v~Ga~rWi~lG~~s 101 (358)
T PF01098_consen 67 KILYLGSLILLLLVLFPFGTEVNGARRWIRLGGFS 101 (358)
T ss_pred HHhhHHHHHHHHHHHcccccccCCceEEEEeeeec
Confidence 3344567777777777 899999999999999644
No 134
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=44.69 E-value=11 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=21.8
Q ss_pred ccccccccccceeeeccc-cccccccccccccee
Q 007732 553 RIACKKCNNFHVWIETKK-SKASARWCQVFIFAF 585 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~-~~skar~C~~C~GsF 585 (591)
.+.|+.|+..+.---..- .......|+.|+..|
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 478999999763211111 335567899999876
No 135
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=44.50 E-value=18 Score=26.65 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=22.9
Q ss_pred ccccccccccceeeecccccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
...|+.|++.+++..+ .....|..|+-.|+
T Consensus 3 ~~~C~~C~~~~i~~~~----~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNKE----DDYEVCIFCGSSFP 32 (33)
T ss_pred ceEcCCCCCCeEEEec----CCeEEcccCCcEee
Confidence 4579999998866433 45678999998875
No 136
>PRK10160 taurine transporter subunit; Provisional
Probab=43.92 E-value=3.8e+02 Score=27.76 Aligned_cols=19 Identities=21% Similarity=0.564 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 007732 270 LMVLVVAALVAFFIGFALA 288 (591)
Q Consensus 270 l~~~~~a~~~~~~~g~~~~ 288 (591)
++.+.++.+++..+|+..+
T Consensus 88 ~~g~~ia~~ig~~lg~~~~ 106 (275)
T PRK10160 88 VLALLAAVVIGIPVGIAMG 106 (275)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 137
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=43.45 E-value=67 Score=33.79 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007732 288 ALVVVALSGTILLWLYG 304 (591)
Q Consensus 288 ~~~~v~~~~~~~lw~y~ 304 (591)
.++++|++|+++.|.|-
T Consensus 110 ~~l~lg~~~~~~~~~Yt 126 (284)
T TIGR00751 110 WFIALGALCIAAAITYT 126 (284)
T ss_pred HHHHHHHHHHHHhHhhc
Confidence 46789999999999995
No 138
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=42.50 E-value=1e+02 Score=29.21 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=26.6
Q ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhh
Q 007732 278 LVAFFIGF-ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK 321 (591)
Q Consensus 278 ~~~~~~g~-~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~ 321 (591)
++.++.|= .-.|-++++++|-++||+|.-=.--...++.|..++
T Consensus 62 Ivd~lTGpig~~iA~LAVI~vG~swmfGrldl~~a~~Vv~GI~iV 106 (120)
T PRK13857 62 ICTFILGPFGQSLAVLGIVAIGISWMFGRASLGLVAGVVGGIVIM 106 (120)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhe
Confidence 44455554 233447888999999999975444444445554433
No 139
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=41.95 E-value=16 Score=28.14 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=19.7
Q ss_pred cccccccccceeeecccccccccccccccce
Q 007732 554 IACKKCNNFHVWIETKKSKASARWCQVFIFA 584 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~skar~C~~C~Gs 584 (591)
..||+|+....+..+. .....|..|+.+
T Consensus 19 ~~CP~Cg~~~~~~~~~---~~~~~C~~C~~q 46 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKT---RGRYRCKACRKQ 46 (46)
T ss_pred CCCCCCCCeeeEEeCC---CCeEECCCCCCc
Confidence 5699999975543332 456779999864
No 140
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=41.84 E-value=13 Score=27.90 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=19.9
Q ss_pred cccccccceeeecccccccccccccccceeEE
Q 007732 556 CKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 556 C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
||+|+..- .......-..-.|+.|+|-++.
T Consensus 2 CP~C~~~l--~~~~~~~~~id~C~~C~G~W~d 31 (41)
T PF13453_consen 2 CPRCGTEL--EPVRLGDVEIDVCPSCGGIWFD 31 (41)
T ss_pred cCCCCccc--ceEEECCEEEEECCCCCeEEcc
Confidence 88888742 2222344566779999998764
No 141
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=41.70 E-value=23 Score=27.01 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=24.0
Q ss_pred ccccccccccceeeecccccccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
...|..|+...+.+..-.. .....|+.|++.-..
T Consensus 5 ey~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~ 38 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQSISE-DDPVPCPECGSTEVR 38 (42)
T ss_pred EEEeCCCCCEEEEEEEcCC-CCCCcCCCCCCCceE
Confidence 3469999987766555444 677889999984443
No 142
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=41.29 E-value=1.2e+02 Score=32.73 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 007732 288 ALVVVALSGTILLWL 302 (591)
Q Consensus 288 ~~~~v~~~~~~~lw~ 302 (591)
++++..+.+++.+++
T Consensus 141 ~~~~~~~~~~~~~~~ 155 (366)
T PRK10245 141 GLVLMVVSCLVTLEL 155 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444443
No 143
>PRK10490 sensor protein KdpD; Provisional
Probab=41.13 E-value=90 Score=37.81 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 007732 266 MFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (591)
Q Consensus 266 ~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~ 304 (591)
|+|+|.++++| .+.|+.||++. +++++++.|++.
T Consensus 430 mlyll~Vll~A----~~~G~~pai~a-avls~l~~nfFF 463 (895)
T PRK10490 430 MLYLLGVVVVA----LFYGRWPSVVA-TVINVASFDLFF 463 (895)
T ss_pred HHHHHHHHHHH----HHhchHHHHHH-HHHHHHHHHhee
Confidence 44554444333 34599987765 677777777654
No 144
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=41.08 E-value=17 Score=27.30 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=22.1
Q ss_pred ccccccccccccc-eeeeccc-cccccccccccc
Q 007732 551 SRRIACKKCNNFH-VWIETKK-SKASARWCQVFI 582 (591)
Q Consensus 551 sr~I~C~~C~Gtg-~~~~T~~-~~skar~C~~C~ 582 (591)
+-.+.||.|+.+. ++-+... .+.+--.|..|+
T Consensus 3 ~i~v~CP~C~s~~~v~k~G~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 3 KIDVHCPRCQSTEGVKKNGKSPSGHQRYRCKDCR 36 (36)
T ss_pred cEeeeCCCCCCCCcceeCCCCCCCCEeEecCcCC
Confidence 3468999999988 4444333 345667799995
No 145
>PHA03239 envelope glycoprotein M; Provisional
Probab=41.06 E-value=95 Score=35.05 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---------Hh-hhh-----hhHH
Q 007732 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW---------LY-GSF-----WTTF 310 (591)
Q Consensus 246 ~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw---------~y-~~f-----w~t~ 310 (591)
-++|++-.|-..++.+.+..++-++..+.+=.++.+|+-..+|--+=.|+|..||| .| .-| |.++
T Consensus 254 gNsF~v~~~~~v~~ai~~F~vL~iiyliv~E~vL~~Yv~vl~G~~lG~lia~~iL~~aa~~Y~~~~Y~~v~v~a~~l~~~ 333 (429)
T PHA03239 254 ALHFGLDIPKATSGALSMFIVLGIIYLMMAELTVAHYVHVLIGPHLGMIIACAIAGTAAHAYADRLYDEIMIASPKLIQG 333 (429)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhHHHhhhhhcccchHHHH
Confidence 36888889999999999998888888888888899998888887777788888888 22 222 6677
Q ss_pred HHHHHhh
Q 007732 311 FVIFLGG 317 (591)
Q Consensus 311 ~~~~~gg 317 (591)
.-+++|.
T Consensus 334 v~~~Lav 340 (429)
T PHA03239 334 AAGILAA 340 (429)
T ss_pred HHHHHHH
Confidence 7777766
No 146
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=41.05 E-value=82 Score=33.58 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007732 287 LALVVVALSGTILLWLYG 304 (591)
Q Consensus 287 ~~~~~v~~~~~~~lw~y~ 304 (591)
+-++++|++|+++-|+|-
T Consensus 119 ~~~l~ig~~g~~~~~~YT 136 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLYQ 136 (304)
T ss_pred HHHHHHHHHHHHHhhecc
Confidence 456789999999999993
No 147
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=40.70 E-value=3.5e+02 Score=28.02 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHhhhhh
Q 007732 254 WCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGS--FWTTFFVIFLGGLAF 320 (591)
Q Consensus 254 w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~--fw~t~~~~~~gg~~f 320 (591)
...++|+++..|..++...+...++.++-+.-|..-++.=++.+++.|...+ .|+-..++++|+.++
T Consensus 227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 3344555555555555555555556666666666666555555665555433 244444444444443
No 148
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=40.53 E-value=1e+02 Score=29.73 Aligned_cols=15 Identities=0% Similarity=-0.057 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 007732 261 IAMVGMFKFLMVLVV 275 (591)
Q Consensus 261 ~s~~~~~~~l~~~~~ 275 (591)
...+.++|+||.+++
T Consensus 75 lkaa~lvYllPLl~l 89 (154)
T PRK10862 75 LRSALLVYMTPLVGL 89 (154)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566777776543
No 149
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=40.31 E-value=1.2e+02 Score=30.97 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 007732 255 CSILSVIAMVGMFK 268 (591)
Q Consensus 255 ~~~~s~~s~~~~~~ 268 (591)
-+|+.+++.+|++.
T Consensus 16 G~~f~ligaIGLlR 29 (197)
T PRK12585 16 GGLLSILAAIGVIR 29 (197)
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555555544
No 150
>PRK10726 hypothetical protein; Provisional
Probab=40.29 E-value=1.3e+02 Score=27.83 Aligned_cols=63 Identities=19% Similarity=0.389 Sum_probs=35.1
Q ss_pred hhhcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 007732 241 FMRMGTTS--FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (591)
Q Consensus 241 ~~~~g~~~--~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~ 304 (591)
|+=.|++. ||+-.|=.||.+.-.+-++-+.+..-.-+=+ .+.-..+++.++++|+.+.+|+-|
T Consensus 40 fl~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l-~~s~l~t~l~V~~lFwllF~~L~G 104 (105)
T PRK10726 40 FLIYGSNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKL-LYSILFTLLTVGCLFWLLFSWLLG 104 (105)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445554 4556688887765443333322222222211 233445677788999999988754
No 151
>COG5547 Small integral membrane protein [Function unknown]
Probab=39.92 E-value=48 Score=27.80 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=12.4
Q ss_pred HHhhhhhhHHHHHHHhh
Q 007732 301 WLYGSFWTTFFVIFLGG 317 (591)
Q Consensus 301 w~y~~fw~t~~~~~~gg 317 (591)
-+-..||=|-+++|+++
T Consensus 24 i~t~GfwKtilviil~~ 40 (62)
T COG5547 24 ILTFGFWKTILVIILIL 40 (62)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34457898888887765
No 152
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.90 E-value=42 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHH
Q 007732 269 FLMVLVVAALVAFFIGFA-------LALVVVALSGTIL 299 (591)
Q Consensus 269 ~l~~~~~a~~~~~~~g~~-------~~~~~v~~~~~~~ 299 (591)
.|+++|+..+|++++.+. |.|-+|||.||++
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~iAlvGllGilv 41 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPAIALVGLLGILV 41 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 577888888887776654 5666888888764
No 153
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=39.24 E-value=71 Score=27.47 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007732 276 AALVAFFIGFALALVVVALSGTILLWL 302 (591)
Q Consensus 276 a~~~~~~~g~~~~~~~v~~~~~~~lw~ 302 (591)
++++....|...+...++++|.++||.
T Consensus 51 ~gl~llv~G~~~~~~~~~v~G~~v~~~ 77 (82)
T PF11239_consen 51 VGLALLVAGVVLSQPPLGVAGFVVMVA 77 (82)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444445555555566666666553
No 154
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=38.75 E-value=1.4e+02 Score=27.78 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=33.0
Q ss_pred hhcchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHhh
Q 007732 242 MRMGTTSFF--SVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI--------GFALALVVVALSGTILLWLYG 304 (591)
Q Consensus 242 ~~~g~~~~~--~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~--------g~~~~~~~v~~~~~~~lw~y~ 304 (591)
+=.|++.+| +-.|=.|+.+. ++.++++++.+.+ -...++.++++|+.+.+|+-|
T Consensus 44 l~YG~nTLfFfLYTWPFFLALm---------PvsVl~Gi~l~~ll~g~l~~s~~~t~l~V~~lFwllF~~L~G 107 (107)
T PF12084_consen 44 LVYGSNTLFFFLYTWPFFLALM---------PVSVLIGIALSSLLRGKLLWSLLATGLAVGCLFWLLFSWLSG 107 (107)
T ss_pred hhhccchHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCcEeeehhhHHHHHHHHHHHHHHHHcC
Confidence 445666544 45788887653 3444444444433 234566788889988888754
No 155
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=38.62 E-value=21 Score=37.02 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHH-----HH-HHHhhhhhhHHHHHHHhhh
Q 007732 286 ALALVVVALSGT-----IL-LWLYGSFWTTFFVIFLGGL 318 (591)
Q Consensus 286 ~~~~~~v~~~~~-----~~-lw~y~~fw~t~~~~~~gg~ 318 (591)
+|--+|.|++|+ +- =|-||++|+.++.+++++.
T Consensus 269 lP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 269 IPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred HHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH
Confidence 344556666663 22 2888888887776666654
No 156
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.20 E-value=13 Score=26.06 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=18.9
Q ss_pred ccccccccceeeecccccccccccccccceeEE
Q 007732 555 ACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 555 ~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
.||.|... -...+..|+.||-.|.+
T Consensus 2 ~CP~C~~~--------V~~~~~~Cp~CG~~F~~ 26 (26)
T PF10571_consen 2 TCPECGAE--------VPESAKFCPHCGYDFEA 26 (26)
T ss_pred cCCCCcCC--------chhhcCcCCCCCCCCcC
Confidence 48888874 34677889999988753
No 157
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=37.96 E-value=1.8e+02 Score=34.55 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhhhh-c--chhhHHHHHHHHhhhhh
Q 007732 293 ALSGTILLWLYGSFWTTFFVIFLGGLAFK-F--THERLALFITTMYSIYC 339 (591)
Q Consensus 293 ~~~~~~~lw~y~~fw~t~~~~~~gg~~f~-~--~h~r~~~~~~~~y~vy~ 339 (591)
+++|++++|+.-+-|....++++.|++|. + +++.+++...|++.+++
T Consensus 441 ~llg~~l~~l~p~~~~~l~l~v~~~~~~~~~~~~~Y~~a~~fiT~~vll~ 490 (701)
T TIGR01667 441 LVIGVALHFLIPSLEGQLTLMVITGVAFFAFRSKNYGWATVFITLLVLLC 490 (701)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555554444443333333333322 2 56666655555555544
No 158
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=37.41 E-value=20 Score=29.55 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=23.5
Q ss_pred ccccccccccccc-eeeecc-ccccccccccccccee
Q 007732 551 SRRIACKKCNNFH-VWIETK-KSKASARWCQVFIFAF 585 (591)
Q Consensus 551 sr~I~C~~C~Gtg-~~~~T~-~~~skar~C~~C~GsF 585 (591)
..|+.||.|++.- ..++.. .-++-...|+.|+...
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Et 38 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQET 38 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceE
Confidence 3689999999753 222222 2346678899999754
No 159
>TIGR02210 rodA_shape rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example.
Probab=37.34 E-value=5.6e+02 Score=27.69 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcchhh
Q 007732 220 AKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (591)
Q Consensus 220 ~~~~~~~~~~w~dc~~rg~~s~~~~g~~~ 248 (591)
..+++|++.....-.+.|-+.-+++|+.+
T Consensus 66 ~~~~ll~l~~~~g~~v~Ga~rWi~lg~~~ 94 (352)
T TIGR02210 66 LGLLLLVAVLLFGTTGKGAQRWIDLGFFR 94 (352)
T ss_pred HHHHHHHHHHHcCCCcCCceeeeecCCcc
Confidence 44555555554555677888888888765
No 160
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=36.82 E-value=51 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=16.9
Q ss_pred cccccccccccceeeecccccccccccccccc
Q 007732 552 RRIACKKCNNFHVWIETKKSKASARWCQVFIF 583 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~~~skar~C~~C~G 583 (591)
+.-.|.+|+-.+ ....-+....|+.|+-
T Consensus 57 ~Pa~CkkCGfef----~~~~ik~pSRCP~CKS 84 (97)
T COG3357 57 RPARCKKCGFEF----RDDKIKKPSRCPKCKS 84 (97)
T ss_pred cChhhcccCccc----cccccCCcccCCcchh
Confidence 345688887754 1112355777888874
No 161
>PRK14279 chaperone protein DnaJ; Provisional
Probab=36.40 E-value=24 Score=38.69 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=25.4
Q ss_pred cccccccccccccccceeeecccccccccccccccceeEE
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
+.+.+.+.|+.|.|++ .........|+.|+|+...
T Consensus 168 v~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G~~ 202 (392)
T PRK14279 168 LRLTSPAPCTTCHGSG-----ARPGTSPKVCPTCNGSGVI 202 (392)
T ss_pred EeeeccccCCCCcccc-----ccCCCCCCCCCCCcceEEE
Confidence 6677889999999987 3344556778888777543
No 162
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=36.38 E-value=1e+02 Score=37.24 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=22.6
Q ss_pred hhhhhhHHHHHHHHhHHHH----HHHHHHHHHhccch
Q 007732 157 VKLSVNVVVRSLRVYVVPT----LKAAIELLERQSPM 189 (591)
Q Consensus 157 ~~~~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~~ 189 (591)
-.++-++-++.+|-++--+ ++.+..+.|++.|.
T Consensus 656 k~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp 692 (1189)
T KOG2041|consen 656 KTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP 692 (1189)
T ss_pred cceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch
Confidence 3456677788888765322 46778888888876
No 163
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=6.6e+02 Score=29.38 Aligned_cols=93 Identities=24% Similarity=0.296 Sum_probs=59.1
Q ss_pred cCccccc---hhhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhccch----------HHHHHhhhhhHHh---
Q 007732 139 TGLGWSL---NRVHLKNMMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPM----------LMTNIYNAHDYVS--- 202 (591)
Q Consensus 139 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--- 202 (591)
+|+.+++ -+|.+++..-+.+.-.|+++|.-=...+-++-|....|..|++- ++.+++.+-|-..
T Consensus 268 sgl~yspDC~v~l~l~ntkg~~~vl~n~aVr~tll~~~~~~~~~~~Ll~q~~~~sps~v~rlSf~~i~mqa~mD~~Lall 347 (636)
T KOG0828|consen 268 SGLVYSPDCFVPLTLNNTKGNVEVLYNKAVRYTLLYIFIVLSQIFLLLRQMRINSPSHVQRLSFLTIAMQAGMDAYLALL 347 (636)
T ss_pred cCcccCCCcCcceeeeccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555 46778888889999999999987766666676766666665432 4555555555322
Q ss_pred -----hhhhhhh-HHHHHHHHHHHHH----HHHHHHHhh
Q 007732 203 -----RKVQQVY-PVALNHLGHFAKI----MLLLSMLWL 231 (591)
Q Consensus 203 -----~~~~~~~-p~v~~~~~~~~~~----~~~~~~~w~ 231 (591)
..||..| |.|..+..+|--. |.-|+..|+
T Consensus 348 ~lta~~vve~lylpfvtaAF~~fV~~siFemRYLlsI~k 386 (636)
T KOG0828|consen 348 FLTANAVVESLYLPFVTAAFFKFVVFSIFEMRYLLSIWK 386 (636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345544 7788777765432 344555666
No 164
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.20 E-value=62 Score=29.59 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 007732 269 FLMVLVVAALVAFFIGFALALVVV 292 (591)
Q Consensus 269 ~l~~~~~a~~~~~~~g~~~~~~~v 292 (591)
.-+++.++|+|+|+.||..--|=+
T Consensus 28 ~q~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 28 QQLILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999987666544
No 165
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=36.18 E-value=23 Score=33.40 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=22.4
Q ss_pred ccccccccccceeeecccc-cccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKS-KASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~-~skar~C~~C~GsF~a 587 (591)
.+.||.|.-.+........ +.+--.|+.|+..|.-
T Consensus 30 ~~~cP~C~s~~~~k~g~~~~~~qRyrC~~C~~tf~~ 65 (129)
T COG3677 30 KVNCPRCKSSNVVKIGGIRRGHQRYKCKSCGSTFTV 65 (129)
T ss_pred cCcCCCCCccceeeECCccccccccccCCcCcceee
Confidence 4679999998822222222 2445569999998863
No 166
>COG1289 Predicted membrane protein [Function unknown]
Probab=36.17 E-value=1.1e+02 Score=35.63 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHhhhhh----hcchhhHHHHHHHHhhhhheee
Q 007732 285 FALALVVVALSGTILLWLYGSFWTT-FFVIFLGGLAF----KFTHERLALFITTMYSIYCAWT 342 (591)
Q Consensus 285 ~~~~~~~v~~~~~~~lw~y~~fw~t-~~~~~~gg~~f----~~~h~r~~~~~~~~y~vy~~~~ 342 (591)
...|.++-.++|.+++|+...-+.. .+++++++++| .+.+++++.+..++-.++|.-+
T Consensus 406 ri~GTllg~~~g~~~l~~~~p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~~~l 468 (674)
T COG1289 406 RILGTLLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLVGL 468 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 4455556666677777776666665 33333333333 3466777777766666666553
No 167
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=35.95 E-value=1.3e+02 Score=31.52 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhh
Q 007732 456 VSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 496 (591)
Q Consensus 456 ~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLs 496 (591)
+.-+||.|++||+-.--.-.. +-.+....+-|-|++|.
T Consensus 95 ~~l~~ksykqla~d~gmqi~~---~~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 95 ETLPKKSYKQLARDMGMQIVN---EPSEHMLGLLELYEYLK 132 (268)
T ss_pred hhcchHHHHHHHHHhCceecC---CchHHHHHHHHHHHhcC
Confidence 456899999999866433321 22456667777777775
No 168
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=35.66 E-value=7.5e+02 Score=30.80 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=8.0
Q ss_pred CCCCCCCCcccccccch
Q 007732 111 GDSTDNISSRETCGVRI 127 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (591)
|||....++.....+..
T Consensus 775 GDG~ND~~mlk~AdVGI 791 (1057)
T TIGR01652 775 GDGANDVSMIQEADVGV 791 (1057)
T ss_pred eCCCccHHHHhhcCeee
Confidence 44444445554444443
No 169
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.65 E-value=18 Score=33.29 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=19.1
Q ss_pred ccccccccccceeeecccccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
+-.|+.|+.++ | --......|+.|+-.|.
T Consensus 9 KR~Cp~CG~kF-Y----DLnk~PivCP~CG~~~~ 37 (108)
T PF09538_consen 9 KRTCPSCGAKF-Y----DLNKDPIVCPKCGTEFP 37 (108)
T ss_pred cccCCCCcchh-c----cCCCCCccCCCCCCccC
Confidence 45688888865 1 22235677999987664
No 170
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=35.54 E-value=2e+02 Score=30.66 Aligned_cols=42 Identities=24% Similarity=0.573 Sum_probs=32.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH--------------------HHHHhhhhhhHHHHHHHhhh
Q 007732 277 ALVAFFIGFALALVVVALSGTI--------------------LLWLYGSFWTTFFVIFLGGL 318 (591)
Q Consensus 277 ~~~~~~~g~~~~~~~v~~~~~~--------------------~lw~y~~fw~t~~~~~~gg~ 318 (591)
-+...++|+..|++.-|+=||+ ++|-.||+..|...|++..+
T Consensus 204 ~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i 265 (267)
T PF07672_consen 204 FAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI 265 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4446678888888888887776 37888888888888877653
No 171
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=35.32 E-value=6.3e+02 Score=27.60 Aligned_cols=131 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhh--c-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007732 216 LGHFAKIMLLLSMLWLDCTIR--G-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVV 292 (591)
Q Consensus 216 ~~~~~~~~~~~~~~w~dc~~r--g-~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v 292 (591)
++-++.+++.++..|+|-.+- + +..+...++.+.=.|+=...=|++++.++++=++..++..+..+| +|.++=.
T Consensus 11 l~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi~~val~~assq~---sPR~l~~ 87 (371)
T PF10011_consen 11 LYAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQF---SPRLLRN 87 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHH
Confidence 344566777777777775443 1 445556666555444444455555566666655555555555543 4444300
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhhhhc-c----hhhHHHHHHHHhhhhheeeehhhhhHh
Q 007732 293 ALSGTILLWLYGSFWTTFFVIFLGGLAFKF-T----HERLALFITTMYSIYCAWTYVGWLGLL 350 (591)
Q Consensus 293 ~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~-~----h~r~~~~~~~~y~vy~~~~~~gwlg~~ 350 (591)
+.-=-..|..-++.+-+|+.-+-++.+.- . -.++++.++.++++.|+-.-+-|..-.
T Consensus 88 -f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i 149 (371)
T PF10011_consen 88 -FMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHI 149 (371)
T ss_pred -HHhCchHHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000001111111111111111 2 348899999999999988888777643
No 172
>PRK10794 cell wall shape-determining protein; Provisional
Probab=35.29 E-value=6.1e+02 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcchhh
Q 007732 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (591)
Q Consensus 219 ~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~ 248 (591)
+..+++|++.....-...|=..-+++|+-+
T Consensus 80 ~~~~~lL~l~~~~g~~~~Ga~rWi~iG~~~ 109 (370)
T PRK10794 80 IICIILLVAVDAFGQISKGAQRWLDLGIVR 109 (370)
T ss_pred HHHHHHHHHHHhcCCCcCCcccceecCCcc
Confidence 455666666666777788888899999765
No 173
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=35.18 E-value=2.2e+02 Score=29.77 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007732 209 YPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALA 288 (591)
Q Consensus 209 ~p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~ 288 (591)
-+....-..|+|.++-+++.+|+|.. +-+..+.|.-. ...---.+++.-+.+|.+.+.++|+.+-
T Consensus 36 ~~~~f~v~lhlGtllAvl~~fr~~i~-~~~~~~~~~~~--------------~~~~~~~~~~~~iiiatip~~v~G~~~~ 100 (259)
T PF02673_consen 36 PGLAFDVFLHLGTLLAVLIYFRKDIW-RLLKGFFRGLR--------------GRSNPDRRLLLLIIIATIPTGVVGLLFK 100 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccc--------------ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999964 11222222100 1112223344445556666666666655
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 007732 289 LVVVALSGTILLWLYGSFWTTFFVIFLGG 317 (591)
Q Consensus 289 ~~~v~~~~~~~lw~y~~fw~t~~~~~~gg 317 (591)
-++-.++ ..+-|+.+..++++|
T Consensus 101 ~~i~~~~-------~~~~~~v~~~Li~~g 122 (259)
T PF02673_consen 101 DFIEALF-------FSSPLVVAIALIITG 122 (259)
T ss_pred HHHHHHh-------hhchHHHHHHHHHHH
Confidence 5555443 113344455555555
No 174
>PRK09546 zntB zinc transporter; Reviewed
Probab=35.15 E-value=30 Score=36.43 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHH-----HH-HHhhhhhhHHHHHHHhh
Q 007732 287 LALVVVALSGTI-----LL-WLYGSFWTTFFVIFLGG 317 (591)
Q Consensus 287 ~~~~~v~~~~~~-----~l-w~y~~fw~t~~~~~~gg 317 (591)
|--||.|++|+= -+ |-||++++.++.++++.
T Consensus 276 PlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~ 312 (324)
T PRK09546 276 PTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIG 312 (324)
T ss_pred HHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHH
Confidence 666777777743 22 77887766655555444
No 175
>PRK11281 hypothetical protein; Provisional
Probab=34.96 E-value=5e+02 Score=32.94 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHH
Q 007732 221 KIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSV 260 (591)
Q Consensus 221 ~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~ 260 (591)
-+++++.-+|+.-...|+-..+=.+...+ .+.|..|..+
T Consensus 557 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~ 595 (1113)
T PRK11281 557 TLIFLAVGLILLTDAFNQSELLWSWSLKL-ALFWLVFATC 595 (1113)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHHHHHHH
Confidence 44555667777776677766654332222 3455555333
No 176
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=34.35 E-value=5.3e+02 Score=30.99 Aligned_cols=114 Identities=7% Similarity=-0.128 Sum_probs=0.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHH--hhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 200 YVSRKVQQVYPVALNHLGHFAKIMLLLSML--WLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAA 277 (591)
Q Consensus 200 ~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~--w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~ 277 (591)
.+..++.|.+.++...++.....+++.+.. |. --++++-...+....|..+..+++=+.=....-.....+
T Consensus 617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~-------ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~ 689 (742)
T TIGR01299 617 LLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESA-------MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFL 689 (742)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhc
Q 007732 278 LVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF 322 (591)
Q Consensus 278 ~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~ 322 (591)
.++.-+|..+|-+|+|+ ++-.+.+.-|++.+.+.++++++..+
T Consensus 690 ~~~~rlGaiigp~i~g~--L~~~~~~~pf~i~a~~lll~~ll~~~ 732 (742)
T TIGR01299 690 NALCKAAAVLGILIFGS--FVGITKAAPILFASAALACGGLLALK 732 (742)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHh
No 177
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=34.35 E-value=5.6e+02 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=25.9
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007732 190 LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSML 229 (591)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~ 229 (591)
++..+.|.--.....+=..=|-|.+|+++.+-|+.+.++.
T Consensus 16 ~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~ 55 (459)
T PF10337_consen 16 LKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVI 55 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHH
Confidence 4444455544555555556678888888888777776655
No 178
>PRK14291 chaperone protein DnaJ; Provisional
Probab=34.12 E-value=24 Score=38.49 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=23.5
Q ss_pred cccccccccccccccceeeecccccccccccccccceeE
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
+.+.+.+.|+.|.|++ .........|+.|+|+..
T Consensus 151 i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G~ 184 (382)
T PRK14291 151 LEVPRYVPCEACGGTG-----YDPGSGEKVCPTCGGSGE 184 (382)
T ss_pred EEEeeeccCCCCcccc-----CCCCCCCccCCCCCCceE
Confidence 5677888999999977 334445566777776643
No 179
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=34.06 E-value=4.7e+02 Score=30.49 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007732 265 GMFKFLMVLVVAALVAFFIGFALALVV 291 (591)
Q Consensus 265 ~~~~~l~~~~~a~~~~~~~g~~~~~~~ 291 (591)
.+.-++.++++.+++++|.++.-++++
T Consensus 69 ~~k~~~~~l~l~sa~asy~~~~y~i~~ 95 (555)
T COG2194 69 LLKPLAGVLSLVSAAASYFAYFYGIII 95 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455566777778888888887775
No 180
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=33.92 E-value=4.1e+02 Score=27.75 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=39.9
Q ss_pred hhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHhhhHHHHHHHHHHHH
Q 007732 232 DCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVA----AL--VAFFIGFALALVVVALSGTI 298 (591)
Q Consensus 232 dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a----~~--~~~~~g~~~~~~~v~~~~~~ 298 (591)
-|.+.|++. |+=|-.+-...|.+++-++-=+.++++.+-+.-. .+ .++|.||-.--+++.++.-+
T Consensus 101 ~g~~~G~~g--~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~~ 171 (240)
T PF03878_consen 101 SGLILGLQG--RFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLASL 171 (240)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHHH
Confidence 356677776 6777777777777777666555555554443211 11 56688888777766654433
No 181
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=33.82 E-value=79 Score=32.91 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=15.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHh--hhhhhH
Q 007732 282 FIGFALALVVVALSGTILLWLY--GSFWTT 309 (591)
Q Consensus 282 ~~g~~~~~~~v~~~~~~~lw~y--~~fw~t 309 (591)
++|+..++.||=++--+|+|+. ..||+.
T Consensus 157 ll~~~~~laivRlilF~i~~~~~g~~fWlf 186 (232)
T TIGR00869 157 IIGGFFAVAILRLILFVLTLIVVKPGIWIF 186 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeee
Confidence 3444455555555556667775 356653
No 182
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=33.08 E-value=1.6e+02 Score=31.11 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007732 287 LALVVVALSGTILLWLYG 304 (591)
Q Consensus 287 ~~~~~v~~~~~~~lw~y~ 304 (591)
.-++++|++|+++-|.|-
T Consensus 106 ~~~l~lg~~g~~~~~~Yt 123 (285)
T TIGR02235 106 ITVLALVGLCCFLGYLYQ 123 (285)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 446788999999999995
No 183
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.01 E-value=61 Score=32.17 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh----hhhhH------HHHHHHhhhhhhcchhhHHHHHHHHhhhhhee
Q 007732 274 VVAALVAFFIGFALALVVVALSGTILLWLYG----SFWTT------FFVIFLGGLAFKFTHERLALFITTMYSIYCAW 341 (591)
Q Consensus 274 ~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~----~fw~t------~~~~~~gg~~f~~~h~r~~~~~~~~y~vy~~~ 341 (591)
++.++.-..+++..+-+++++|| + +||.- +.+++++.+. .+++.-+ |..||.+|
T Consensus 20 ~~~v~~lai~sl~~s~llI~lFg-------~~~~~nf~~NllGVil~~~~~~~~l~-~~k~~p~------m~Ev~YvW 83 (165)
T PF11286_consen 20 VACVASLAILSLAFSQLLIALFG-------GESGGNFHWNLLGVILGLLLTSALLR-QLKTHPF------MTEVYYVW 83 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-------CCCCCceeeeHHHHHHHHHHHHHHHH-HHccChH------HHHHHHHH
Confidence 33333334455555556666666 3 45532 3333333333 4455555 67777776
No 184
>PRK01766 multidrug efflux protein; Reviewed
Probab=32.94 E-value=6.6e+02 Score=27.14 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=13.1
Q ss_pred hhHHhhhhhhhhHHHHHHHHH
Q 007732 198 HDYVSRKVQQVYPVALNHLGH 218 (591)
Q Consensus 198 ~~~~~~~~~~~~p~v~~~~~~ 218 (591)
++.+...+.-.+|+...-+..
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~ 255 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFE 255 (456)
T ss_pred HHHHHHHHHccchHHHHHHHH
Confidence 445566677778877655444
No 185
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=32.33 E-value=4.3e+02 Score=32.60 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVL 273 (591)
Q Consensus 205 ~~~~~p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~ 273 (591)
.++.||-+.+-.-.....+++....|-=-. .+-+++- |.++|..-||+.|.+|+.+++...
T Consensus 70 ~~~~Fpq~r~RfR~~L~YI~~~~l~W~lYf------av~~rs~--fi~~~~~slc~lslv~~mf~~ft~ 130 (1318)
T KOG3618|consen 70 LERCFPQTRRRFRYALFYIGFACLLWSLYF------AVHMRSR--FIVMVAPSLCFLSLVCVMFFLFTF 130 (1318)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------eeccCce--eeeehHHHHHHHHHHHHHHHHHHH
Confidence 455666665544444444555555552111 1223444 788999999999999887776543
No 186
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=31.88 E-value=1.5e+02 Score=31.51 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007732 287 LALVVVALSGTILLWLYG 304 (591)
Q Consensus 287 ~~~~~v~~~~~~~lw~y~ 304 (591)
+.+++++++++++.|.|.
T Consensus 120 ~~~~~~~~~~~~lg~~Ys 137 (308)
T PRK12887 120 PWLLITVGISLLIGTAYS 137 (308)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 455778888999999997
No 187
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=31.79 E-value=5.1e+02 Score=25.48 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHH
Q 007732 210 PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVG 265 (591)
Q Consensus 210 p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~ 265 (591)
++|.......--+.+.++.-+..|.+-=+.+ -. ++.-+++++|..+..-.|..|
T Consensus 32 ~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~-~~-~~~~~lai~y~~~~~P~sf~~ 85 (177)
T PF04144_consen 32 RLVKRAYYLWLFLAITLFWNFIACLALLIAG-GS-GSDFGLAILYLLLGTPASFFC 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-cceehHHHHHHHHHhHHHHHH
Confidence 3444433333344455555556665544433 11 667788888876666666554
No 188
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=31.78 E-value=17 Score=36.47 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHH------HHHhhhhhh--HHHHHHHhhhh
Q 007732 286 ALALVVVALSGTIL------LWLYGSFWT--TFFVIFLGGLA 319 (591)
Q Consensus 286 ~~~~~~v~~~~~~~------lw~y~~fw~--t~~~~~~gg~~ 319 (591)
.|.-||.|+||+=+ =|-||++|+ .++.+++++++
T Consensus 245 lPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 286 (292)
T PF01544_consen 245 LPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAILL 286 (292)
T ss_dssp HHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHHHH
Confidence 67778888888722 266777765 44444444433
No 189
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.76 E-value=2.3e+02 Score=29.52 Aligned_cols=21 Identities=5% Similarity=-0.047 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHhhCCCCC
Q 007732 455 DVSILKREYRKKAMLVHPDKN 475 (591)
Q Consensus 455 s~eeIKKAYRKLAlk~HPDKn 475 (591)
-.+++.+++..+....++...
T Consensus 154 ~~~~~~~~~~~~~~E~~g~~~ 174 (301)
T PF14362_consen 154 LEKEIDRAQQEAQCEIFGTGG 174 (301)
T ss_pred HHHHHHHHHHHHHHhhcCCCC
Confidence 356788888888888888744
No 190
>PRK14294 chaperone protein DnaJ; Provisional
Probab=31.76 E-value=26 Score=37.88 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=20.5
Q ss_pred cccccccccccccccceeeeccccccccccccccccee
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
+.+.+.+.|+.|.|+| .........|+.|+|..
T Consensus 139 i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 171 (366)
T PRK14294 139 IRIQKLETCEECHGSG-----CEPGTSPTTCPQCGGSG 171 (366)
T ss_pred EEeeecccCCCCCCcc-----ccCCCCcccCCCcCCeE
Confidence 5667788888888876 22333345566665553
No 191
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=31.66 E-value=1.4e+02 Score=32.00 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007732 287 LALVVVALSGTILLWLYGS 305 (591)
Q Consensus 287 ~~~~~v~~~~~~~lw~y~~ 305 (591)
..++++|++|+++.|.|..
T Consensus 114 ~~~l~igl~g~~~~~~Yt~ 132 (317)
T PRK13387 114 WLLLVIGLICFAIGILYTG 132 (317)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 3467889999999999954
No 192
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=31.59 E-value=28 Score=27.62 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=19.8
Q ss_pred ccccccccceeee---cccccccccccccccceeEE
Q 007732 555 ACKKCNNFHVWIE---TKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 555 ~C~~C~Gtg~~~~---T~~~~skar~C~~C~GsF~a 587 (591)
+||.|+|.-..+. +.........|..|+-....
T Consensus 3 PCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 3 PCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCcceeeEeccCCCCCEEEEECCCCCCCccc
Confidence 6899998876443 21222223358888876653
No 193
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=31.40 E-value=3.9e+02 Score=25.76 Aligned_cols=6 Identities=33% Similarity=1.293 Sum_probs=2.8
Q ss_pred hhhhhh
Q 007732 230 WLDCTI 235 (591)
Q Consensus 230 w~dc~~ 235 (591)
|.|+.+
T Consensus 125 ~~~~~~ 130 (193)
T PF06738_consen 125 WIDMIV 130 (193)
T ss_pred HHHHHH
Confidence 444443
No 194
>PRK14301 chaperone protein DnaJ; Provisional
Probab=31.22 E-value=28 Score=37.91 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=23.3
Q ss_pred Ccccccccccccccccceeeeccccccccccccccccee
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
.+.+.+.+.|+.|.|+| .........|+.|+|+.
T Consensus 138 ~i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 171 (373)
T PRK14301 138 TLRIPKNVTCDDCGGSG-----AAPGTSPETCRHCGGSG 171 (373)
T ss_pred EEEeeecccCCCCCCcc-----cCCCCCCcccCCccCee
Confidence 35677888999999977 33444456677777764
No 195
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=1.7e+02 Score=33.57 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007732 218 HFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGT 297 (591)
Q Consensus 218 ~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~ 297 (591)
.|-.+.-|.+.+=+.-.-=|+.-.++.||-+.=.|+|..++.+. +.+.=-++++.|+-+.++.-.. +..+
T Consensus 21 ~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~---------P~~~Ei~l~~vi~~~~~~~~f~-~~t~ 90 (497)
T COG5265 21 TFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNIL---------PTLVEISLVAVILWRVYGWWFA-LTTL 90 (497)
T ss_pred HHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhh---------HHHHHHHHHHHHHHhhcccHHH-HHHH
Confidence 34445556777888888888999999999998888887766543 3333333333444444444322 3346
Q ss_pred HHHHHhhhhhhHHH
Q 007732 298 ILLWLYGSFWTTFF 311 (591)
Q Consensus 298 ~~lw~y~~fw~t~~ 311 (591)
+.+|+|..||+...
T Consensus 91 vtv~lY~~ftv~~s 104 (497)
T COG5265 91 VTVILYLLFTVIVS 104 (497)
T ss_pred HHHHHHHHhheeeh
Confidence 88999999998654
No 196
>PRK14416 membrane protein; Provisional
Probab=31.18 E-value=3.6e+02 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhH----HHHHHHhhhhhhcch
Q 007732 298 ILLWLYGSFWTT----FFVIFLGGLAFKFTH 324 (591)
Q Consensus 298 ~~lw~y~~fw~t----~~~~~~gg~~f~~~h 324 (591)
+++|.+...|.+ .++.++-+++...+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~i~~~v~~~h 176 (200)
T PRK14416 146 FLVWYGSHSEFATLISVLLFLMIGIKFVLDN 176 (200)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHhh
Confidence 345655555555 332333344444444
No 197
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=31.17 E-value=2.5e+02 Score=33.57 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhh---hcchhhHHHHHHHHhhhhhee
Q 007732 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAF---KFTHERLALFITTMYSIYCAW 341 (591)
Q Consensus 288 ~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f---~~~h~r~~~~~~~~y~vy~~~ 341 (591)
|-++=+++|++++|+.-+.|...+++++.|.+| ..+|+-++....|++.+.|.-
T Consensus 434 GTllG~~lg~~ll~l~p~~~~~l~liv~~~~l~~~~~~~~Y~~a~~fiT~~vll~~~ 490 (704)
T TIGR01666 434 GTLLGVVIGSPLLYFNPSLELQLVLVVLTGVLFFAFRSNNYSFATFFITLLVLLCFN 490 (704)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444556666666655554444444444442 336777776666666666643
No 198
>PRK14300 chaperone protein DnaJ; Provisional
Probab=31.03 E-value=28 Score=37.82 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=25.5
Q ss_pred CcccccccccccccccceeeecccccccccccccccceeEE
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
.+.+.+.+.|+.|.|++ .........|+.|+|+...
T Consensus 139 ~i~~~r~~~C~~C~G~g-----~~~~~~~~~C~~C~G~G~~ 174 (372)
T PRK14300 139 NISFSSEVKCDTCHGSG-----SEKGETVTTCDACSGVGAT 174 (372)
T ss_pred EEEeeeccccCCCCCcc-----cCCCCCCccCCCccCeEEE
Confidence 36677888999999987 3344556678888877543
No 199
>PRK14288 chaperone protein DnaJ; Provisional
Probab=30.97 E-value=30 Score=37.64 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=23.5
Q ss_pred cccccccccccccccceeeecccccccccccccccceeEE
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
+.+.+.+.|+.|+|+| ... ....+|..|+|+...
T Consensus 135 i~~~r~~~C~~C~G~G-----~~~-~~~~~C~~C~G~G~~ 168 (369)
T PRK14288 135 IKVQYQSVCESCDGTG-----AKD-KALETCKQCNGQGQV 168 (369)
T ss_pred EEEEeeccCCCCCCcc-----cCC-CCCcCCCCCCCCcEE
Confidence 5667788999999977 222 245678888776643
No 200
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=30.69 E-value=1.1e+02 Score=37.85 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHH
Q 007732 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVA-FFIGFALALV 290 (591)
Q Consensus 246 ~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~-~~~g~~~~~~ 290 (591)
-...|+||+..|-|+....-++..++.-.+.++.+ .++|+++.++
T Consensus 888 ~~li~lvL~~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~ 933 (1051)
T TIGR00914 888 LLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSIS 933 (1051)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 33456666666666665544443333333333333 3556666655
No 201
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.53 E-value=30 Score=33.25 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=23.6
Q ss_pred ccccccccccccceeeeccc-ccccccccccccce
Q 007732 551 SRRIACKKCNNFHVWIETKK-SKASARWCQVFIFA 584 (591)
Q Consensus 551 sr~I~C~~C~Gtg~~~~T~~-~~skar~C~~C~Gs 584 (591)
.|-++|..|+|++..+.... .....+.|+.|+-.
T Consensus 108 ~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnen 142 (147)
T cd03031 108 ARFVPCSECNGSCKVFAENATAAGGFLRCPECNEN 142 (147)
T ss_pred cCeEECCCCCCcceEEeccCcccccEEECCCCCcc
Confidence 56799999999985543321 13456899999843
No 202
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=30.19 E-value=26 Score=24.16 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=17.6
Q ss_pred cccccccccceeeecccccccccccccccce
Q 007732 554 IACKKCNNFHVWIETKKSKASARWCQVFIFA 584 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~skar~C~~C~Gs 584 (591)
+.|+.|+... ...++.|+.|+.+
T Consensus 3 ~~Cp~Cg~~~--------~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEI--------DPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcC--------CcccccChhhCCC
Confidence 5799998842 3568899999875
No 203
>PRK14284 chaperone protein DnaJ; Provisional
Probab=30.13 E-value=26 Score=38.28 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=24.9
Q ss_pred cccccccccccccccceeeecccccccccccccccceeE
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
+.+.+.+.|+.|.|+| .........|+.|+|+..
T Consensus 153 i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G~ 186 (391)
T PRK14284 153 LLVSGYKSCDACSGSG-----ANSSQGIKVCDRCKGSGQ 186 (391)
T ss_pred EEEeeeccCCCCcccc-----cCCCCCCeecCccCCeeE
Confidence 5567889999999987 344555677888887754
No 204
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.09 E-value=2.3e+02 Score=28.23 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=7.9
Q ss_pred hhhhhhhchhhhhhc
Q 007732 230 WLDCTIRGIDSFMRM 244 (591)
Q Consensus 230 w~dc~~rg~~s~~~~ 244 (591)
+.-|.+.|+-.+..-
T Consensus 91 ~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445566665554444
No 205
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=29.90 E-value=2.6e+02 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 007732 288 ALVVVALSGTILLWLYGS 305 (591)
Q Consensus 288 ~~~~v~~~~~~~lw~y~~ 305 (591)
-++++|++|+++.|.|-.
T Consensus 114 ~~~~~~~~~~~~~~~Ys~ 131 (293)
T PRK06080 114 WLLLLGLLCIAAAILYTG 131 (293)
T ss_pred HHHHHHHHHHHHhhhhcC
Confidence 456778888899999953
No 206
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=29.86 E-value=1.3e+02 Score=33.77 Aligned_cols=97 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhh---hhhchhhhhh--cchhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Q 007732 231 LDC---TIRGIDSFMR--MGTTSFFSVIWCSIL----------SVIAMVGMFKFLMVLVVAALVAFFIG--FALALVVVA 293 (591)
Q Consensus 231 ~dc---~~rg~~s~~~--~g~~~~~~i~w~~~~----------s~~s~~~~~~~l~~~~~a~~~~~~~g--~~~~~~~v~ 293 (591)
.|| ..-|..+..| +|.+.||++|....+ .+=.-++.+|+++.+++..+.-++.- +.-.-+-||
T Consensus 63 ~~C~~~~c~G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~ 142 (429)
T PF03348_consen 63 FDCPSDSCVGYSAVYRVSFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVA 142 (429)
T ss_pred CCcchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhhhhhhc------------chhh------HHHHHHHHhhhhhe
Q 007732 294 LSGTILLWLYGSFWTTFFVIFLGGLAFKF------------THER------LALFITTMYSIYCA 340 (591)
Q Consensus 294 ~~~~~~lw~y~~fw~t~~~~~~gg~~f~~------------~h~r------~~~~~~~~y~vy~~ 340 (591)
.+| ++++|+=.+...+ +.|. .+.|++...++|.+
T Consensus 143 ~~g-------------a~~FiliQlIlLvDFah~wne~w~~~~e~~~s~~w~~~Li~~T~~~y~~ 194 (429)
T PF03348_consen 143 RVG-------------AFIFILIQLILLVDFAHSWNESWVEKAEEGNSKRWYIALIGVTLLFYAA 194 (429)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhccccccCceehhHHHHHHHHHHHH
No 207
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=29.76 E-value=7.7e+02 Score=29.09 Aligned_cols=74 Identities=14% Similarity=0.313 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007732 211 VALNHLGHFAKIML-LLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA 286 (591)
Q Consensus 211 ~v~~~~~~~~~~~~-~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~ 286 (591)
..+..+.-|+-..+ ++.++|.--..|=. +.-||=--+.+-|+|-.+.- ...+.++..++++.++.++..+.|++
T Consensus 167 ~~~~~l~~~~i~~~~~l~v~~~~~~~K~~-gI~rL~G~s~~~I~~~~l~~-~~~~~~l~~l~~~i~~~~~~~~~~~~ 241 (679)
T TIGR01654 167 NILVILALLLIVIFVLFLIYYLMINMKRV-AIYRLNGFSLRKILFRLFSK-NCTYLLISALLILLLSSFLLFIKGYT 241 (679)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 33344444444444 55556655444422 23344445566666665543 22333344455555566666777776
No 208
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=29.69 E-value=2.8e+02 Score=26.92 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHH
Q 007732 246 TTSFFSVIWCSIL 258 (591)
Q Consensus 246 ~~~~~~i~w~~~~ 258 (591)
+-.+....+.|++
T Consensus 15 ~~~l~~~~l~p~~ 27 (219)
T PF07264_consen 15 SPKLRRLSLIPLL 27 (219)
T ss_dssp STTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 209
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.66 E-value=74 Score=32.95 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=11.8
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhh
Q 007732 297 TILLWLYGSFWTTFFVIFLGGLA 319 (591)
Q Consensus 297 ~~~lw~y~~fw~t~~~~~~gg~~ 319 (591)
++|-++++..|+..++.|+.|++
T Consensus 43 v~ig~l~~~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 43 VLIGLLFGSWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHHHccHHHHHHHHHHHHHH
Confidence 33444444556656655555543
No 210
>PRK10767 chaperone protein DnaJ; Provisional
Probab=29.55 E-value=33 Score=37.14 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=22.7
Q ss_pred Ccccccccccccccccceeeeccccccccccccccccee
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
.+.+.+.+.|+.|.|++ .........|+.|+|+.
T Consensus 136 ~v~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 169 (371)
T PRK10767 136 EIRIPTLVTCDTCHGSG-----AKPGTSPKTCPTCHGAG 169 (371)
T ss_pred EEeeeecccCCCCCCcc-----cCCCCCCccCCCCCCee
Confidence 36677888999999976 33334445666666654
No 211
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=29.53 E-value=1.7e+02 Score=28.72 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHhhCCCCCC
Q 007732 455 DVSILKREYRKKAMLVHPDKNM 476 (591)
Q Consensus 455 s~eeIKKAYRKLAlk~HPDKn~ 476 (591)
+..++-.+|..+.. ||.++.
T Consensus 137 ~~~~l~~kY~~l~~--~~~~~~ 156 (199)
T PF10112_consen 137 TAVKLLEKYAELES--QPVKSE 156 (199)
T ss_pred HHHHHHHHHHHHHh--ccCCCh
Confidence 45677778877654 677663
No 212
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=29.50 E-value=2.7e+02 Score=25.23 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhh----------------hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhcch-hhHHHHH
Q 007732 269 FLMVLVVAALVAFFIGF----------------ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTH-ERLALFI 331 (591)
Q Consensus 269 ~l~~~~~a~~~~~~~g~----------------~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~~h-~r~~~~~ 331 (591)
+...+.+.++....-.+ .+.++++.+.+-+++.-|..|++++++++++-..+.=.+ -...+++
T Consensus 41 l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~lGf~~at~~~~~~~~~~~g~r~~~~~~~~ 120 (141)
T PF07331_consen 41 LGILLLILSLLLLVRSFRGPDEDEEPFDRVDWKRVLLVLGLLVLYVLLLEYLGFIIATFLFLFAFMLLLGERRWLRLLLI 120 (141)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcHHHHHHH
Q ss_pred HHHhhhhheeeehhhhhHhh
Q 007732 332 TTMYSIYCAWTYVGWLGLLL 351 (591)
Q Consensus 332 ~~~y~vy~~~~~~gwlg~~L 351 (591)
+...++..-.+-.-+|++-|
T Consensus 121 s~~~~~~i~~~F~~~L~v~l 140 (141)
T PF07331_consen 121 SVVFAAVIYFVFAKLLGVPL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHCCCC
No 213
>PRK08156 type III secretion system protein SpaS; Validated
Probab=29.39 E-value=8.1e+02 Score=27.10 Aligned_cols=14 Identities=14% Similarity=-0.119 Sum_probs=9.4
Q ss_pred cccHHHHHHHHhhh
Q 007732 357 FVSSDALIFFLKSK 370 (591)
Q Consensus 357 fls~D~L~~lL~~~ 370 (591)
|+---++++++|+.
T Consensus 189 ~lvia~~D~~~Qr~ 202 (361)
T PRK08156 189 ALIVLILDFIAEYF 202 (361)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556788888843
No 214
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=29.39 E-value=97 Score=33.44 Aligned_cols=18 Identities=17% Similarity=0.613 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007732 287 LALVVVALSGTILLWLYG 304 (591)
Q Consensus 287 ~~~~~v~~~~~~~lw~y~ 304 (591)
+.+++.+++|+++.|.|-
T Consensus 125 ~~il~~~~~~l~l~~~YS 142 (331)
T PRK12392 125 MVIISSILAGLFVAYIYS 142 (331)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 345566788888999994
No 215
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=29.32 E-value=1.4e+02 Score=36.87 Aligned_cols=20 Identities=10% Similarity=0.414 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhhHHHHHHHh
Q 007732 297 TILLWLYGSFWTTFFVIFLG 316 (591)
Q Consensus 297 ~~~lw~y~~fw~t~~~~~~g 316 (591)
-+.+++|-..|...+.||=.
T Consensus 360 Y~~~~iwLqlWppLfAIIN~ 379 (942)
T PRK13735 360 YVFALMWLQSWPLLYAILNS 379 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655543
No 216
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=29.16 E-value=86 Score=28.96 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=17.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 007732 278 LVAFFIGFALALVVVALSGTIL 299 (591)
Q Consensus 278 ~~~~~~g~~~~~~~v~~~~~~~ 299 (591)
.--+|.||..|+.|+||+++++
T Consensus 77 ~tna~yGfviGl~i~aLlAlil 98 (108)
T COG4062 77 LTNAFYGFVIGLGIMALLALIL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999987764
No 217
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=29.11 E-value=1.5e+02 Score=35.35 Aligned_cols=41 Identities=5% Similarity=0.095 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCchHHHHHHHHHHHHHHHhhh
Q 007732 457 SILKREYRKKAMLVHPDKN-MGNEKAVEAFKKLQNAYEVLFD 497 (591)
Q Consensus 457 eeIKKAYRKLAlk~HPDKn-~~~p~A~e~Fk~I~eAYEVLsD 497 (591)
+++.++-++++....-.+. +.++..+.++..+.++.+-+.+
T Consensus 272 ~~~a~ac~~la~ai~~~~~~~~~~~~~~al~~l~~sl~~~~~ 313 (704)
T TIGR01666 272 ELQAQACKEITASIRLNKPYQHDKRVERALLGTLHSLDLYRA 313 (704)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4566666777655543332 1224556778888888776654
No 218
>PRK14295 chaperone protein DnaJ; Provisional
Probab=29.10 E-value=36 Score=37.34 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=24.7
Q ss_pred CcccccccccccccccceeeecccccccccccccccceeE
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
.+.+.+.+.|+.|.|++ .........|..|+|+..
T Consensus 160 ~i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G~ 194 (389)
T PRK14295 160 PLRLTSQAPCPACSGTG-----AKNGTTPRVCPTCSGTGQ 194 (389)
T ss_pred EEEeeccccCCCCcccc-----cCCCCCCcCCCCCCCEeE
Confidence 36678889999999987 334445567777777643
No 219
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=28.80 E-value=6.8e+02 Score=26.25 Aligned_cols=100 Identities=18% Similarity=0.275 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007732 215 HLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSIL--SV--IAMVGMFKFLMVLVVAALVAFFIGFALALV 290 (591)
Q Consensus 215 ~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~--s~--~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~ 290 (591)
+...+..++.++..-|.-|....++.++==+|.+++..+|-.+- .+ -...-+..+++.+++|++++..+|+..|..
T Consensus 12 ~~~~~~~~~~~l~~Wq~~~~~~~~~~~~LP~P~~V~~~~~~~~~~g~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~ 91 (258)
T COG0600 12 ALLPLLGLLALLALWQLAARLGLIPPFILPSPSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLS 91 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555555555555788888888888888887765 22 345567788888999999999988887653
Q ss_pred ------------------HHHHHHHHHHHHhhhhhhHHHHHHH
Q 007732 291 ------------------VVALSGTILLWLYGSFWTTFFVIFL 315 (591)
Q Consensus 291 ------------------~v~~~~~~~lw~y~~fw~t~~~~~~ 315 (591)
.+|+.=++|+|+= ..+.+-+++++
T Consensus 92 ~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG-~g~~s~i~i~~ 133 (258)
T COG0600 92 RLLERLLDPLVQVLRPIPPLALAPLAILWFG-IGETSKIVIAV 133 (258)
T ss_pred HHHHHHHhHHHHHHhcCCHHHHHHHHHHHHh-CCcchHHHHHH
Confidence 5678888889963 33444444444
No 220
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.57 E-value=4.4e+02 Score=27.89 Aligned_cols=65 Identities=26% Similarity=0.486 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhcchhhHH--HHHHHHhhhhh
Q 007732 268 KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLA--LFITTMYSIYC 339 (591)
Q Consensus 268 ~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~~h~r~~--~~~~~~y~vy~ 339 (591)
|-|++|++-+.+..++| .-+.+=.-|.+..++|- -|..+- ++|+ +..++|.|+. -++...|.++.
T Consensus 178 YcLLPlvvlS~v~i~~~-~~g~vg~il~~~~v~W~---t~aaS~-lfv~--al~~~~~rlLiaYp~~l~Y~~Fa 244 (249)
T KOG3103|consen 178 YCLLPLVVLSFVNIFVG-LQGTVGYILSALFVLWC---TYAASK-LFVS--ALSMENQRLLVAYPCALLYGVFA 244 (249)
T ss_pred HHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHH---HHHHHH-HHHH--HhhccccchhhhhHHHHHHhhhe
Confidence 55666666666666666 44444223334555664 233333 3344 7788999974 35555555543
No 221
>PRK09776 putative diguanylate cyclase; Provisional
Probab=28.50 E-value=2.8e+02 Score=33.31 Aligned_cols=139 Identities=14% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhh-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 208 VYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTS-FFSVIWCSIL---SVIAMVGMFKFLMVLVVAALVAFFI 283 (591)
Q Consensus 208 ~~p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~-~~~i~w~~~~---s~~s~~~~~~~l~~~~~a~~~~~~~ 283 (591)
+||--...-.-++.++..++.......-=+.-..+=++... .++..|.... .-..+.-..-++..+.+++++...+
T Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 119 (1092)
T PRK09776 40 RHAGRMWPGILLSCSLGNIAANILLFSTSSLNLTWTTINLVEAVVGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLL 119 (1092)
T ss_pred hcchhhhHHHHHHHHHHHHhHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhCHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhc------------------chhhHHHHHHHHhhhhheeeehh
Q 007732 284 GFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF------------------THERLALFITTMYSIYCAWTYVG 345 (591)
Q Consensus 284 g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~------------------~h~r~~~~~~~~y~vy~~~~~~g 345 (591)
| |++..++++.--.|.....|.++-.+ |.+++.. .-.-++++++++.+.|.+..+..
T Consensus 120 ~---~~~~~~~~~~~~~~~~~~~w~~~~~~--g~l~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1092)
T PRK09776 120 G---GVLVVLLTPGDDPLRAFLIWVLSEAI--GMLALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLALLYLP 194 (1092)
T ss_pred H---HHHHHHHcCCCchhhHHHHHHHHHHH--HHHHHhhHhhhcchHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred hhhHhh
Q 007732 346 WLGLLL 351 (591)
Q Consensus 346 wlg~~L 351 (591)
|.-+++
T Consensus 195 ~~~~~~ 200 (1092)
T PRK09776 195 WPFTFI 200 (1092)
T ss_pred CcHHHH
No 222
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=28.43 E-value=5.2e+02 Score=29.75 Aligned_cols=43 Identities=26% Similarity=0.592 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhhhh---hchhhhhhcchh------------------hHHHHHHHHHHHHHHHH
Q 007732 222 IMLLLSMLWLDCTI---RGIDSFMRMGTT------------------SFFSVIWCSILSVIAMV 264 (591)
Q Consensus 222 ~~~~~~~~w~dc~~---rg~~s~~~~g~~------------------~~~~i~w~~~~s~~s~~ 264 (591)
=+.+++.+|.-|.+ =|-.+.+.|||+ -.|+-+|...+++.-..
T Consensus 45 svg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~ 108 (479)
T KOG1287|consen 45 SVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTS 108 (479)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhH
Confidence 46788899999964 566777788774 45788888877654444
No 223
>PRK10774 cell division protein FtsW; Provisional
Probab=28.39 E-value=8.7e+02 Score=27.09 Aligned_cols=38 Identities=16% Similarity=0.417 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcchhh--------HHHHHHHH
Q 007732 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS--------FFSVIWCS 256 (591)
Q Consensus 219 ~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~--------~~~i~w~~ 256 (591)
+..+++|++..=..-.+-|-++-+++|+.+ +.+|+|..
T Consensus 106 ~~~l~llllv~~~g~~~~Ga~rWi~iG~~~~QPSE~~Ki~~il~lA 151 (404)
T PRK10774 106 LGSIIMLLIVLVVGSSVNGASRWIALGPLRIQPAELTKLSLFCYLA 151 (404)
T ss_pred HHHHHHHHHHHHcCCccCCcceEEEeCCccCChhHHHHHHHHHHHH
Confidence 334444444443455677888888898754 35555555
No 224
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=28.38 E-value=1.1e+02 Score=32.61 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=18.3
Q ss_pred cccccccccceeeecccccccccccccccc
Q 007732 554 IACKKCNNFHVWIETKKSKASARWCQVFIF 583 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~skar~C~~C~G 583 (591)
-.|+.|++.=..+. -..-...||+.|+.
T Consensus 246 epC~~CGt~I~k~~--~~gR~t~~CP~CQ~ 273 (273)
T COG0266 246 EPCRRCGTPIEKIK--LGGRSTFYCPVCQK 273 (273)
T ss_pred CCCCccCCEeEEEE--EcCCcCEeCCCCCC
Confidence 47999999643221 23344678999974
No 225
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=28.33 E-value=30 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=14.9
Q ss_pred ccccccccceeeeccccccccccccccccee
Q 007732 555 ACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 555 ~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
-|+.|++.-. ......++.|+.|+..+
T Consensus 5 fC~~CG~~t~----~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTK----PAPGGWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEE----E-SSSS-EEESSSS-EE
T ss_pred ccCcCCcccc----CCCCcCEeECCCCcCEe
Confidence 4899999642 23446788999998765
No 226
>PRK09459 pspG phage shock protein G; Reviewed
Probab=28.26 E-value=3.7e+02 Score=23.77 Aligned_cols=9 Identities=11% Similarity=0.818 Sum_probs=5.5
Q ss_pred HHHHHHhhh
Q 007732 297 TILLWLYGS 305 (591)
Q Consensus 297 ~~~lw~y~~ 305 (591)
++..|+|-+
T Consensus 55 ~v~vW~~r~ 63 (76)
T PRK09459 55 VVVVWVIRA 63 (76)
T ss_pred HHHHHHHHH
Confidence 455677754
No 227
>PRK14286 chaperone protein DnaJ; Provisional
Probab=28.19 E-value=36 Score=37.04 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=24.0
Q ss_pred Ccccccccccccccccceeeeccccccccccccccccee
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
.+.+.+.+.|+.|.|+| .........|..|+|+.
T Consensus 144 ~i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 177 (372)
T PRK14286 144 KIEIPRLESCVDCNGSG-----ASKGSSPTTCPDCGGSG 177 (372)
T ss_pred EEEeeccccCCCCcCCC-----cCCCCCCccCCCCcCeE
Confidence 36678889999999987 33444456677777764
No 228
>PF14369 zf-RING_3: zinc-finger
Probab=28.11 E-value=44 Score=24.85 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=9.5
Q ss_pred cccccccceeEE
Q 007732 576 RWCQVFIFAFCT 587 (591)
Q Consensus 576 r~C~~C~GsF~a 587 (591)
..|+.|++.|+-
T Consensus 22 ~~CP~C~~gFvE 33 (35)
T PF14369_consen 22 VACPRCHGGFVE 33 (35)
T ss_pred cCCcCCCCcEeE
Confidence 469999998874
No 229
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.98 E-value=29 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=15.6
Q ss_pred cccccccceeeeccccccccccccccccee
Q 007732 556 CKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 556 C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
|++|+.. -...+..|+.|+.++
T Consensus 2 Cp~CG~~--------~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAE--------IEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCC--------CCCcCcchhhhCCcC
Confidence 8888874 234577899998753
No 230
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=27.90 E-value=1.4e+02 Score=34.70 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHH
Q 007732 247 TSFFSVIWCSILSVIAMVG------MFKFLMVLVVAALVAFFIGFALAL 289 (591)
Q Consensus 247 ~~~~~i~w~~~~s~~s~~~------~~~~l~~~~~a~~~~~~~g~~~~~ 289 (591)
.++.+++++++..+++..+ +..++++|.+.++++.|+-.+.|+
T Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~K~~~~~l~l~sa~~~Yf~~~ygv 97 (558)
T PRK11560 49 VVELAATVLVTFFLLRLLSLFGRRFWRVLASLLVLFSAAASYYMTFFNV 97 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5666777777777776666 233456666666666666555443
No 231
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=27.79 E-value=8.2e+02 Score=29.55 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=6.8
Q ss_pred HHHHHHhhCCCC
Q 007732 463 YRKKAMLVHPDK 474 (591)
Q Consensus 463 YRKLAlk~HPDK 474 (591)
|+-.|+.-.|+-
T Consensus 592 FY~kAke~~~~v 603 (700)
T COG1480 592 FYYKAKEENPNV 603 (700)
T ss_pred HHHHHHHhCCCC
Confidence 334466666764
No 232
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=27.67 E-value=1e+02 Score=32.13 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=20.8
Q ss_pred cccccccccceeeecccccccccccccccceeE
Q 007732 554 IACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
-.|+.|+..=..+.- .+-...+|+.|+..+.
T Consensus 236 ~pC~~Cg~~I~~~~~--~gR~ty~Cp~CQ~~~~ 266 (269)
T PRK14811 236 QPCPRCGTPIEKIVV--GGRGTHFCPQCQPLRP 266 (269)
T ss_pred CCCCcCCCeeEEEEE--CCCCcEECCCCcCCCC
Confidence 479999886433222 3356688999997653
No 233
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=27.51 E-value=5.8e+02 Score=26.06 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=53.0
Q ss_pred HHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhHHHHH-HHHHHH-H
Q 007732 227 SMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMV------LVVAALVAFFIGFALALVV-VALSGT-I 298 (591)
Q Consensus 227 ~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~------~~~a~~~~~~~g~~~~~~~-v~~~~~-~ 298 (591)
+=.|.....=|.. +++-|.......+|..++|+...+|++--..+ .....+.+.++++..|.|+ |++.=+ .
T Consensus 209 ~Hk~~e~~~~~~~-l~~~~~~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~ell~ 287 (317)
T PF02535_consen 209 LHKIPEGFALGSI-LVKAGFSKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVELLP 287 (317)
T ss_pred HhHhHHHhhhhhh-hhhhccccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544433332 55667777777779999999998888655555 4445567777888888774 333211 3
Q ss_pred HHHHhhh---hhhHHHHHHHhh
Q 007732 299 LLWLYGS---FWTTFFVIFLGG 317 (591)
Q Consensus 299 ~lw~y~~---fw~t~~~~~~gg 317 (591)
=.+.+.. .....++.++.|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~G 309 (317)
T PF02535_consen 288 EEFHNKHSRKSRLLKFLGFLIG 309 (317)
T ss_pred HHHhcCcchHHHHHHHHHHHHH
Confidence 3455554 233334444444
No 234
>PRK11827 hypothetical protein; Provisional
Probab=27.39 E-value=33 Score=28.71 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=21.4
Q ss_pred ccccccccccceeeecccccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
-..||.|+|.=.+. .......|..|+-.|.
T Consensus 8 ILaCP~ckg~L~~~----~~~~~Lic~~~~laYP 37 (60)
T PRK11827 8 IIACPVCNGKLWYN----QEKQELICKLDNLAFP 37 (60)
T ss_pred heECCCCCCcCeEc----CCCCeEECCccCeecc
Confidence 35899999975431 2345688999998774
No 235
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=27.25 E-value=42 Score=30.24 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhh-------HHHHHHHHHHHH
Q 007732 270 LMVLVVAALVAFFIGFA-------LALVVVALSGTI 298 (591)
Q Consensus 270 l~~~~~a~~~~~~~g~~-------~~~~~v~~~~~~ 298 (591)
|++|++..+|+.++++. |.|-++||+||+
T Consensus 4 llSL~aG~lvG~iy~ll~v~sPAPP~iAl~GllGi~ 39 (90)
T PF07235_consen 4 LLSLGAGLLVGVIYSLLKVPSPAPPVIALVGLLGIL 39 (90)
T ss_pred eeehhhhhHHHHHHHHhcCCCCCCcHhHHHHHHHHh
Confidence 56777777777777664 334466665553
No 236
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=27.22 E-value=8.8e+02 Score=26.77 Aligned_cols=19 Identities=32% Similarity=0.835 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhh
Q 007732 295 SGTILLWLYGSFWTTFFVIFLGG 317 (591)
Q Consensus 295 ~~~~~lw~y~~fw~t~~~~~~gg 317 (591)
+=++++|+|-+ .+++++|+
T Consensus 249 v~i~LlWlyls----~~I~L~Ga 267 (412)
T PRK04214 249 VPILLLWIYLL----WVLVLLGA 267 (412)
T ss_pred HHHHHHHHHHH----HHHHHHHH
Confidence 33567788754 44455555
No 237
>PF07947 YhhN: YhhN-like protein; InterPro: IPR012506 The members of this family are similar to the hypothetical protein yhhN expressed by Escherichia coli (P37616 from SWISSPROT). Many of the members of this family are annotated as being possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. ; GO: 0016021 integral to membrane
Probab=27.12 E-value=5.6e+02 Score=24.53 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=10.6
Q ss_pred hHHHHHHHhhhhhhc
Q 007732 308 TTFFVIFLGGLAFKF 322 (591)
Q Consensus 308 ~t~~~~~~gg~~f~~ 322 (591)
....++.+|+.+|.+
T Consensus 134 ~~~~~~~iGa~lF~i 148 (185)
T PF07947_consen 134 KSSWLAAIGALLFLI 148 (185)
T ss_pred chhHHHHHHHHHHHH
Confidence 346677778877776
No 238
>PF03203 MerC: MerC mercury resistance protein
Probab=27.09 E-value=4.7e+02 Score=23.78 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 253 IWCSILSVIAMVGMFKFLMVLVVAA 277 (591)
Q Consensus 253 ~w~~~~s~~s~~~~~~~l~~~~~a~ 277 (591)
+|.+.+|++-|.++=.++..+.+.+
T Consensus 6 i~~S~LC~iHCl~~P~l~~~l~~~g 30 (116)
T PF03203_consen 6 IGASLLCAIHCLALPALLALLPALG 30 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888766554444444433
No 239
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=27.05 E-value=37 Score=36.43 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=22.5
Q ss_pred Ccccccccccccccccceeeeccccccccccccccccee
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
.+.+.+.+.|+.|.|++ .........|..|+|..
T Consensus 137 ~i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 170 (354)
T TIGR02349 137 EIEIPRKESCETCHGTG-----AKPGTDPKTCPTCGGTG 170 (354)
T ss_pred EEEeecCCcCCCCCCCC-----CCCCCCCccCCCCCCee
Confidence 35677888999999977 23333455666666653
No 240
>PLN00012 chlorophyll synthetase; Provisional
Probab=26.81 E-value=3.1e+02 Score=30.28 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHh-------------hhhhh---HHHHHHHhhhhhhcch
Q 007732 266 MFKFLMVLVVAALVAFFIGFA-----LALVVVALSGTILLWLY-------------GSFWT---TFFVIFLGGLAFKFTH 324 (591)
Q Consensus 266 ~~~~l~~~~~a~~~~~~~g~~-----~~~~~v~~~~~~~lw~y-------------~~fw~---t~~~~~~gg~~f~~~h 324 (591)
+...+..+.++.+++.++.+. +-+++++++|+++.|.| |++.+ .+.+.+.+|.+..-.-
T Consensus 171 l~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~ 250 (375)
T PLN00012 171 ITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTL 250 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCC
Q ss_pred hhHHHHHHHHhhhhhe
Q 007732 325 ERLALFITTMYSIYCA 340 (591)
Q Consensus 325 ~r~~~~~~~~y~vy~~ 340 (591)
.-.++++..+|.+.+.
T Consensus 251 s~~~illal~~~l~~l 266 (375)
T PLN00012 251 TPDVVVLTLLYSIAGL 266 (375)
T ss_pred CHHHHHHHHHHHHHHH
No 241
>PRK14296 chaperone protein DnaJ; Provisional
Probab=26.39 E-value=38 Score=36.87 Aligned_cols=9 Identities=11% Similarity=-0.208 Sum_probs=5.1
Q ss_pred cccccceeE
Q 007732 578 CQVFIFAFC 586 (591)
Q Consensus 578 C~~C~GsF~ 586 (591)
|..|+|+-+
T Consensus 209 C~~C~G~g~ 217 (372)
T PRK14296 209 CKNCKGKGK 217 (372)
T ss_pred ccCCCCceE
Confidence 666666543
No 242
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.35 E-value=9.2e+02 Score=28.25 Aligned_cols=125 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 007732 213 LNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVL----------VVAALVAFF 282 (591)
Q Consensus 213 ~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~----------~~a~~~~~~ 282 (591)
.+...+..-.+++.+++|..+.-.=--- -|.|-..|++..|....+..++..+.--+.++ .-+-.++.+
T Consensus 360 ~r~~~~~~~~~~lg~~~~~~~~~~~~~~-~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~ 438 (613)
T KOG0061|consen 360 LRLIQSLVTGLLLGLLYLNLGNDAKGIQ-NRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKT 438 (613)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHH
Q ss_pred HhhhHHHH-HHHHHHHHHHHHhh---------hhhhHHHHHHHhhhhhhc------chhhHHHHHHHHhhhh
Q 007732 283 IGFALALV-VVALSGTILLWLYG---------SFWTTFFVIFLGGLAFKF------THERLALFITTMYSIY 338 (591)
Q Consensus 283 ~g~~~~~~-~v~~~~~~~lw~y~---------~fw~t~~~~~~gg~~f~~------~h~r~~~~~~~~y~vy 338 (591)
+...|-++ .--+|.++.-||-| .|..+.++.++.+.+|.+ .+.-.+..+..++.++
T Consensus 439 l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~ 510 (613)
T KOG0061|consen 439 LAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLP 510 (613)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHH
No 243
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=26.17 E-value=2.7e+02 Score=28.98 Aligned_cols=12 Identities=33% Similarity=0.276 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 007732 250 FSVIWCSILSVI 261 (591)
Q Consensus 250 ~~i~w~~~~s~~ 261 (591)
|++++..|.|+.
T Consensus 157 ~lvl~~~fRs~~ 168 (333)
T PF03176_consen 157 FLVLLLVFRSVR 168 (333)
T ss_pred HhhhhhHHHHHH
Confidence 344455555543
No 244
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=26.16 E-value=1.2e+02 Score=27.64 Aligned_cols=17 Identities=41% Similarity=0.473 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007732 268 KFLMVLVVAALVAFFIG 284 (591)
Q Consensus 268 ~~l~~~~~a~~~~~~~g 284 (591)
+|+.++++++++.+...
T Consensus 48 ~Wl~Ilg~a~l~~~l~~ 64 (100)
T PF10724_consen 48 FWLAILGVAALVGLLFL 64 (100)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45666666666655543
No 245
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=26.14 E-value=1.4e+02 Score=30.76 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhhHHH
Q 007732 272 VLVVAALVAFFIGFALAL 289 (591)
Q Consensus 272 ~~~~a~~~~~~~g~~~~~ 289 (591)
-+..++++++.+|-..++
T Consensus 67 H~lg~~l~~lllGp~~a~ 84 (230)
T PRK11909 67 HAVGGTLIAILLGPWAAV 84 (230)
T ss_pred hHHHHHHHHHHHhHHHHH
Confidence 334445555555644444
No 246
>PRK14282 chaperone protein DnaJ; Provisional
Probab=26.08 E-value=41 Score=36.47 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=23.1
Q ss_pred Ccccccccccccccccceeeeccccccccccccccccee
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
.+.+.+.+.|+.|.|+| .........|..|+|+.
T Consensus 146 ~i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 179 (369)
T PRK14282 146 PVEYDRYETCPHCGGTG-----VEPGSGYVTCPKCHGTG 179 (369)
T ss_pred EEEeeecccCCCCCccC-----CCCCCCCcCCCCCCCcC
Confidence 36677888999999977 33344456677776664
No 247
>COG3704 VirB6 Type IV secretory pathway, VirB6 components [Intracellular trafficking and secretion]
Probab=25.92 E-value=2.3e+02 Score=31.84 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 007732 163 VVVRSLRVYVVPTLKAAIEL 182 (591)
Q Consensus 163 ~~~~~~r~~~~~~~~~~~~~ 182 (591)
+..|..+.-+...+.-+|..
T Consensus 105 ~~~~~~~~~v~~~v~n~~~y 124 (406)
T COG3704 105 PFLRIKIAGVAALVANAAGY 124 (406)
T ss_pred HHHHHHHHHHHHHHHhccCc
Confidence 55555555555444444443
No 248
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=25.86 E-value=1.1e+03 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=11.9
Q ss_pred HhhhHHHH-HHHHHHHHHHHHh
Q 007732 283 IGFALALV-VVALSGTILLWLY 303 (591)
Q Consensus 283 ~g~~~~~~-~v~~~~~~~lw~y 303 (591)
+.-.|-.+ .+-+|.+++-||-
T Consensus 442 l~~lp~~~~~~~if~~i~Y~~~ 463 (617)
T TIGR00955 442 IAELPLFIILPALFTSITYWMI 463 (617)
T ss_pred HHHHHHHHHHHHHHHhhhheec
Confidence 33334433 3447777888874
No 249
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.78 E-value=1.1e+02 Score=24.68 Aligned_cols=22 Identities=32% Similarity=0.842 Sum_probs=16.5
Q ss_pred HHHHhhhhhhHHHHHHHhhhhh
Q 007732 299 LLWLYGSFWTTFFVIFLGGLAF 320 (591)
Q Consensus 299 ~lw~y~~fw~t~~~~~~gg~~f 320 (591)
++|+...||-|-+++++.+.-+
T Consensus 22 ~l~l~~GF~~tl~i~~~~~iG~ 43 (51)
T PF10031_consen 22 LLILTFGFWKTLFILLFAAIGY 43 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999988888776544
No 250
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=25.60 E-value=4.7e+02 Score=24.83 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 007732 288 ALVVVALSGTILLWL 302 (591)
Q Consensus 288 ~~~~v~~~~~~~lw~ 302 (591)
-+++.|++.++++|.
T Consensus 71 ~~l~~~vlP~~~l~~ 85 (156)
T PF08019_consen 71 WLLLLGVLPALLLWR 85 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445544445554
No 251
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=25.60 E-value=3.4e+02 Score=23.15 Aligned_cols=44 Identities=20% Similarity=0.546 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 007732 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTIL 299 (591)
Q Consensus 249 ~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~ 299 (591)
||-.+|- ..-++-+++.++.-.+.++.++++.|++.+|+.=+++
T Consensus 6 ~fk~iW~-------~~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~ 49 (63)
T PF06341_consen 6 FFKTIWK-------YFDIILFILAMIFINITAFLINQIAGLISIGITLFLA 49 (63)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556664 2233445556666667778888998888887743333
No 252
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.59 E-value=46 Score=24.25 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=19.4
Q ss_pred cccccccccceeeecccccccccccccccce
Q 007732 554 IACKKCNNFHVWIETKKSKASARWCQVFIFA 584 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~skar~C~~C~Gs 584 (591)
..|+.|+........... .....|+.|+..
T Consensus 6 y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~ 35 (41)
T smart00834 6 YRCEDCGHTFEVLQKISD-DPLATCPECGGD 35 (41)
T ss_pred EEcCCCCCEEEEEEecCC-CCCCCCCCCCCc
Confidence 468899886644333222 556779999884
No 253
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=25.57 E-value=7.5e+02 Score=29.17 Aligned_cols=139 Identities=16% Similarity=0.097 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhh--hchh------hhhhcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 007732 207 QVYPVALNHLGHFAKIMLLLSMLWLDCTI--RGID------SFMRMGTTSFFSVIWCSIL-SVIAMVGMFKFLMVLVVAA 277 (591)
Q Consensus 207 ~~~p~v~~~~~~~~~~~~~~~~~w~dc~~--rg~~------s~~~~g~~~~~~i~w~~~~-s~~s~~~~~~~l~~~~~a~ 277 (591)
|.|.+.+-.++-.|....-...+|--=.. -+-| .-.+.-+.+|.++..++++ .+.+++.=+|++++++ +.
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~-~~ 388 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFG-SV 388 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHH-HH
Confidence 55666555555556555555566644222 1211 1123345666666666544 5556677778887766 45
Q ss_pred HHHHHHhhhHHHH---HHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhcchhhHHHHHHHHhhhhheeeehhhhhHhh
Q 007732 278 LVAFFIGFALALV---VVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLL 351 (591)
Q Consensus 278 ~~~~~~g~~~~~~---~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~~h~r~~~~~~~~y~vy~~~~~~gwlg~~L 351 (591)
+.+.++|....+= .-..+|.++|=-.+-.|++...+++..+ ...|+.+++- .=++.|.|..+|=.|.-.
T Consensus 389 ~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql--~~p~~~ig~a---~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 389 LMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQL--IVPDEDIGTA---TGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred HHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEe--eeCchHHHHH---HHHHHHHHHHhhHHHHHH
Confidence 5566666544321 2234466666666778888777776654 5678776543 334556777777666554
No 254
>PRK14298 chaperone protein DnaJ; Provisional
Probab=25.53 E-value=42 Score=36.63 Aligned_cols=10 Identities=20% Similarity=-0.180 Sum_probs=5.6
Q ss_pred ccccccceeE
Q 007732 577 WCQVFIFAFC 586 (591)
Q Consensus 577 ~C~~C~GsF~ 586 (591)
.|..|+|.-.
T Consensus 200 ~C~~C~G~g~ 209 (377)
T PRK14298 200 PCPVCSGTGK 209 (377)
T ss_pred CCCCCCCccE
Confidence 3666666543
No 255
>PRK05978 hypothetical protein; Provisional
Probab=25.52 E-value=35 Score=33.11 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=25.5
Q ss_pred cccccccccccceeeecccccccccccccccceeEEE
Q 007732 552 RRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCTY 588 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay 588 (591)
-+..||.|+.-+.+ .+..+-...|+.|+-.|-.+
T Consensus 32 l~grCP~CG~G~LF---~g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 32 FRGRCPACGEGKLF---RAFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred HcCcCCCCCCCccc---ccccccCCCccccCCccccC
Confidence 35689999886655 34667788899999887543
No 256
>PRK01637 hypothetical protein; Reviewed
Probab=25.51 E-value=4.9e+02 Score=27.08 Aligned_cols=17 Identities=24% Similarity=1.020 Sum_probs=9.9
Q ss_pred HHHHHHhhhhhhHHHHHHHhh
Q 007732 297 TILLWLYGSFWTTFFVIFLGG 317 (591)
Q Consensus 297 ~~~lw~y~~fw~t~~~~~~gg 317 (591)
++++|+| ++++++++|+
T Consensus 244 ~lllWly----l~~~ilL~Ga 260 (286)
T PRK01637 244 ILFVWVY----LSWCIVLLGA 260 (286)
T ss_pred HHHHHHH----HHHHHHHHHH
Confidence 4556655 4456666665
No 257
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=25.42 E-value=42 Score=31.15 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=17.5
Q ss_pred ccccccccceeeecccc-ccccccccccccee
Q 007732 555 ACKKCNNFHVWIETKKS-KASARWCQVFIFAF 585 (591)
Q Consensus 555 ~C~~C~Gtg~~~~T~~~-~skar~C~~C~GsF 585 (591)
.|+.|+|+|........ ......|+.|+|..
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~G 85 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAG 85 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcc
Confidence 67777777754322111 12245688887765
No 258
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=25.33 E-value=6.9e+02 Score=25.94 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 007732 218 HFAKIMLLLS 227 (591)
Q Consensus 218 ~~~~~~~~~~ 227 (591)
-+|.+++++.
T Consensus 35 ~~g~l~~~~~ 44 (290)
T TIGR00776 35 TFGALILSIA 44 (290)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 259
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=25.16 E-value=3.6e+02 Score=32.19 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHhhhhhhHHHHHHHhhhhhhc-----chhh---HHHHHHHHhhhhheeeehhhh
Q 007732 301 WLYGSFWTTFFVIFLGGLAFKF-----THER---LALFITTMYSIYCAWTYVGWL 347 (591)
Q Consensus 301 w~y~~fw~t~~~~~~gg~~f~~-----~h~r---~~~~~~~~y~vy~~~~~~gwl 347 (591)
+.+.+-|.....+++.++.|.+ ..+. ++.|+..+|.|..+-...-|.
T Consensus 76 ll~~~p~~~~~~l~~~tf~~~mlga~G~r~~~I~f~~L~~aiytml~~~~~~~w~ 130 (701)
T TIGR01667 76 LLFPKPWLFPFLLTLLTFGFILLGALGQRYATIAFASLLAAIYTMLGAGEVPVWF 130 (701)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHcCcccccHHH
Confidence 3555555555555555555555 3333 455666677776665544453
No 260
>TIGR03155 sulfolob_CbsB cytochrome b558/566, subunit B. Members of this protein family are CbsB, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=25.16 E-value=2.8e+02 Score=29.68 Aligned_cols=58 Identities=19% Similarity=0.465 Sum_probs=38.5
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHH
Q 007732 241 FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFAL-------------ALVVVALSGTI 298 (591)
Q Consensus 241 ~~~~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~-------------~~~~v~~~~~~ 298 (591)
+.|+|..+|..-.-.-.+--.-++--.|.|++++++-++.-++-+.+ .+.++|+.+++
T Consensus 42 L~~iGni~fY~~fv~l~lvSills~kykaLlplti~LlISpf~~LIpnY~~Sp~wy~~EI~i~ilgI~~~i 112 (302)
T TIGR03155 42 LLRIGNVSFYIFFISLLLVSLLLSNKYKALLPLTIVLIISPFLALIPNYVSSTYYYSIEIFIIIVGIMALI 112 (302)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhccccccchHHHHHHHHHHHHHHHHHH
Confidence 46899999875433333322334566788999999988887776655 55566666543
No 261
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=25.14 E-value=4e+02 Score=25.71 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHH
Q 007732 266 MFKFLMVLVVAALVAFFIGFALALVVV---ALSGTILL 300 (591)
Q Consensus 266 ~~~~l~~~~~a~~~~~~~g~~~~~~~v---~~~~~~~l 300 (591)
++|.++=+.+-..++..+|....++++ +++|+.++
T Consensus 9 ~~~~~iEi~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~ 46 (148)
T PRK11463 9 LLYPLIEIAVFIAVASVIGVGWTLLLVILTSVLGVLLA 46 (148)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444444445556666665555433 44444443
No 262
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=25.02 E-value=3.4e+02 Score=29.45 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhh--h--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007732 208 VYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFM--R--MGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI 283 (591)
Q Consensus 208 ~~p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~--~--~g~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~ 283 (591)
..+-+..+...+|-+.++++.+-.+-.+-+++.-+ + |-+..+++.=| .+.++.+++++|+.+.+. ..+
T Consensus 199 ~~~~~~~~~~~vg~iy~li~~ff~~~~~~~i~~~~~~~~~l~~~~~~~~R~-------~~~~~~~~~~Sl~~~~v~-~af 270 (382)
T PF12051_consen 199 FTDPVALAPSQVGLIYLLILTFFQFMFLGPIHMEMGLRRKLKPRHYLIYRW-------IISWIAYFFLSLFYSLVS-LAF 270 (382)
T ss_pred CCchhhcchhhHHHHHHHHHHHHHHHHhhhHHHhhhcccccCHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHH
Confidence 34667888899999988888888877777766554 1 22222222222 223334444454444333 222
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhcchhhHHHHHHHHhhhhheeeehhhhhHhhhhccc--cccHH
Q 007732 284 GFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLS--FVSSD 361 (591)
Q Consensus 284 g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~~h~r~~~~~~~~y~vy~~~~~~gwlg~~Ls~nls--fls~D 361 (591)
+.-...-. |=-|.+++||+...-+.+ +|+ -.|= +-++.+-+.-.-||=.++..|++ |.+-+
T Consensus 271 ~~~~~~~~-g~~gf~v~Wm~~~l~m~a----~g~-----~~e~-------~~~~i~~~~~~~~ll~wvi~nv~~~~~P~e 333 (382)
T PF12051_consen 271 QVDFTVAF-GKGGFVVYWMFSWLYMSA----VGL-----ANEN-------VISIIGPPFMPFWLLFWVILNVSSTFYPLE 333 (382)
T ss_pred CCCccccC-CCCcHHHHHHHHHHHHHH----HHH-----HHHH-------HHHHHccchHHHHHHHHHHHhcccccCChh
Confidence 22210000 114566778874332222 222 1121 22333677677777777777874 66666
Q ss_pred HHHHHH
Q 007732 362 ALIFFL 367 (591)
Q Consensus 362 ~L~~lL 367 (591)
+...|-
T Consensus 334 l~p~fy 339 (382)
T PF12051_consen 334 LSPGFY 339 (382)
T ss_pred hCccHH
Confidence 654443
No 263
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.88 E-value=1.4e+02 Score=31.04 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=27.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhc
Q 007732 280 AFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF 322 (591)
Q Consensus 280 ~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~ 322 (591)
.+++||-+-=++|+. ++.|+...+.+.-++++.-|++++.
T Consensus 157 l~IlGYCLfPl~v~a---li~~~~~~l~~lr~vv~~~~~~WSs 196 (234)
T KOG2946|consen 157 LCILGYCLFPLVVAA---LIICLFRDLFFLRLVVTSIGLAWSS 196 (234)
T ss_pred hhhhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666444445543 5888888888888888888887773
No 264
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=24.77 E-value=4e+02 Score=29.92 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 007732 248 SFFSVIWCSILSVIAMVG 265 (591)
Q Consensus 248 ~~~~i~w~~~~s~~s~~~ 265 (591)
+=.++||-+++++++-..
T Consensus 237 ~H~l~~yGFil~f~aT~v 254 (389)
T PRK15033 237 FHHLTFYGFMLCFAATVV 254 (389)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677777777666544
No 265
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=24.67 E-value=46 Score=27.99 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=22.3
Q ss_pred ccccccccccceeeecccccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
-..||.|+|.=.+..+ ....+|..|+..|.
T Consensus 8 iLaCP~~kg~L~~~~~----~~~L~c~~~~~aYp 37 (60)
T COG2835 8 ILACPVCKGPLVYDEE----KQELICPRCKLAYP 37 (60)
T ss_pred eeeccCcCCcceEecc----CCEEEecccCceee
Confidence 3589999998544333 55899999998775
No 266
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=40 Score=35.90 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=23.9
Q ss_pred ccccccccccccceeeecccccccccccccccce
Q 007732 551 SRRIACKKCNNFHVWIETKKSKASARWCQVFIFA 584 (591)
Q Consensus 551 sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~Gs 584 (591)
.|.++|..|+|+...+..........+|..|+-.
T Consensus 238 ~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNEN 271 (281)
T KOG2824|consen 238 ARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNEN 271 (281)
T ss_pred cceEecCCCCCceeeeeeccCCCcEEECcccCCC
Confidence 4578899999987555433456677888888754
No 267
>PRK14285 chaperone protein DnaJ; Provisional
Probab=24.54 E-value=40 Score=36.57 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=24.3
Q ss_pred Ccccccccccccccccceeeeccccccccccccccccee
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
.+.+++.+.|+.|.|++ .........|+.|+|+.
T Consensus 140 ~i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 173 (365)
T PRK14285 140 NINITRNMLCESCLGKK-----SEKGTSPSICNMCNGSG 173 (365)
T ss_pred EEEeeecccCCCCCCcc-----cCCCCCCccCCCccCce
Confidence 36678889999999987 33444556677777764
No 268
>PRK13591 ubiA prenyltransferase; Provisional
Probab=24.47 E-value=1.3e+02 Score=32.51 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhh
Q 007732 292 VALSGTILLWLYG 304 (591)
Q Consensus 292 v~~~~~~~lw~y~ 304 (591)
++++++++.|+|.
T Consensus 124 l~ll~~l~g~lYS 136 (307)
T PRK13591 124 LAFLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHhc
Confidence 4455555555555
No 269
>PHA03237 envelope glycoprotein M; Provisional
Probab=24.20 E-value=2.5e+02 Score=31.74 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007732 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWL 302 (591)
Q Consensus 246 ~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~ 302 (591)
-++|++-.|-..+..+.+.+++-++..+.+=.++..|+-..+|--+=.|+|..|||.
T Consensus 248 gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~rYv~vl~G~~lG~lia~~~l~~ 304 (424)
T PHA03237 248 ANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSRYVHVLPGPALGLLIAYGMLAV 304 (424)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 368888899999999888888888888888888888877666666666666667664
No 270
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=23.93 E-value=6.6e+02 Score=26.13 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-----HHHHHHhhhHH
Q 007732 222 IMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILS--------VIAMVGMFKFLMVLVVAA-----LVAFFIGFALA 288 (591)
Q Consensus 222 ~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s--------~~s~~~~~~~l~~~~~a~-----~~~~~~g~~~~ 288 (591)
+.++.+..+.=+--||+.+++.+.-+.+.++.+..-+. ++...+++...+.+.... ..+.++|-..+
T Consensus 7 ~~if~~lll~igg~~G~~sllsL~~n~~~i~~~~i~~~~~G~~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~ 86 (244)
T PF07907_consen 7 LIIFILLLLLIGGKKGLRSLLSLIFNFLIIFFVLIPLILNGYNPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIG 86 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHh
Q 007732 289 LVVVALSGTILLWLY 303 (591)
Q Consensus 289 ~~~v~~~~~~~lw~y 303 (591)
+++.++++.++.|+.
T Consensus 87 ~~~~~~l~~~~~~~~ 101 (244)
T PF07907_consen 87 VLLAGILALLVMKLA 101 (244)
T ss_pred HHHHHHHHHHHHHHH
No 271
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.86 E-value=92 Score=31.88 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 007732 275 VAALVAFFIGFALALVVVALSGTI 298 (591)
Q Consensus 275 ~a~~~~~~~g~~~~~~~v~~~~~~ 298 (591)
+.+++++++++.|-++++++++++
T Consensus 233 ~~~lv~~l~~l~p~~~~~~~~~~~ 256 (262)
T PF14257_consen 233 LSGLVVFLVGLLPWLPLILIIGLL 256 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666655443333
No 272
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=23.61 E-value=2.7e+02 Score=27.78 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007732 270 LMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (591)
Q Consensus 270 l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw 301 (591)
++..+++...++-.. .++++++++++++.+|
T Consensus 168 ~~l~gi~lGla~~~K-~~~~~~~~~~~~~~~~ 198 (245)
T PF02366_consen 168 LLLAGIALGLAILTK-GPGLLLVLPAGLLFLW 198 (245)
T ss_pred HHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHH
Confidence 333444444444443 2333333344444444
No 273
>PRK11383 hypothetical protein; Provisional
Probab=23.47 E-value=7.1e+02 Score=24.44 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 007732 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTIL 299 (591)
Q Consensus 246 ~~~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~ 299 (591)
|.+|..+-|..++. |++-.++.|-=|...--==||-.++|+.|+|+.+.
T Consensus 9 t~af~~~sw~al~~-----g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs 57 (145)
T PRK11383 9 SPAFSIVSWIALVG-----GIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAAS 57 (145)
T ss_pred cHHHHHHHHHHHHH-----HHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHH
Confidence 56788888876643 23333333333443333347888889999998876
No 274
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=23.46 E-value=51 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=17.3
Q ss_pred cccccccccceeeecccccc----cccccccccc
Q 007732 554 IACKKCNNFHVWIETKKSKA----SARWCQVFIF 583 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~s----kar~C~~C~G 583 (591)
.+||.|+...+.+....... ....|..|+-
T Consensus 4 kPCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred cCCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 46999955554444322211 4567888875
No 275
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=23.43 E-value=4.6e+02 Score=27.31 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 007732 275 VAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGG 317 (591)
Q Consensus 275 ~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg 317 (591)
+--.+...+.-.|.++++.++..+++-.+..+|+.+++.+..-
T Consensus 30 vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~ 72 (334)
T PF04515_consen 30 VLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSI 72 (334)
T ss_pred HHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344566777889999998888888888888888777655443
No 276
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=23.35 E-value=3.3e+02 Score=29.16 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 007732 206 QQVYPVALNHLGHFAKIMLLL 226 (591)
Q Consensus 206 ~~~~p~v~~~~~~~~~~~~~~ 226 (591)
+.+=|.+..-+.+-+-+.+++
T Consensus 114 ~~Vgp~~g~~~~~~~~~a~~~ 134 (297)
T PRK13021 114 SIVGPQVGQELAEQGGLALLV 134 (297)
T ss_pred eEECHHHHHHHHHHHHHHHHH
Confidence 556677777776666555443
No 277
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=23.27 E-value=1.7e+02 Score=34.42 Aligned_cols=21 Identities=24% Similarity=0.839 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHH
Q 007732 291 VVALSGTILLWLYGSFWTTFF 311 (591)
Q Consensus 291 ~v~~~~~~~lw~y~~fw~t~~ 311 (591)
|..||++++.|.-..||+.-+
T Consensus 99 iL~Lfa~lFcwvs~~F~tAl~ 119 (736)
T COG2943 99 ILVLFAVLFCWVSAGFWTALM 119 (736)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998644
No 278
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=23.27 E-value=1.5e+02 Score=32.93 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhh
Q 007732 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLA 319 (591)
Q Consensus 288 ~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~ 319 (591)
++.+=|++|..==|.+++|=+-+|+..+||.+
T Consensus 117 ~l~~G~liGa~~G~~iay~~vPSFIVTLaGmL 148 (394)
T COG4214 117 TLVLGGLIGAWQGFWIAYLKVPSFIVTLAGML 148 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHhHHHH
Confidence 34445677777889999999999999999954
No 279
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=23.26 E-value=3.8e+02 Score=27.04 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=28.3
Q ss_pred hhhhhHHHHHHHhhhhhhc-----chhhHHHHHHHHhhhhhee
Q 007732 304 GSFWTTFFVIFLGGLAFKF-----THERLALFITTMYSIYCAW 341 (591)
Q Consensus 304 ~~fw~t~~~~~~gg~~f~~-----~h~r~~~~~~~~y~vy~~~ 341 (591)
--||..=..++++++.+.+ .-+|.++++.-+-++|+.-
T Consensus 103 R~fW~lkv~lfl~~f~~Il~~~~~~~e~a~l~L~~lv~~~~l~ 145 (177)
T PF14965_consen 103 RVFWLLKVVLFLLSFVYILQKYEGPPERAALLLCLLVLVCFLT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHc
Confidence 4467778888888888888 5678888887777666543
No 280
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=23.13 E-value=7.8e+02 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=18.3
Q ss_pred chhhhcCCCccccCCCCcCCCCccccCCC
Q 007732 84 PRREKQGTDTRRDLGQSVSSETSETIAGD 112 (591)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (591)
|..+....|...||+..-.++- |++|
T Consensus 13 DEe~~lk~d~EIDLEKG~lpey---nSee 38 (247)
T PF03303_consen 13 DEEDELKTDHEIDLEKGPLPEY---NSEE 38 (247)
T ss_pred chhcccCCCCceecccCCCCcc---cCCC
Confidence 3344456688899998888887 5555
No 281
>PRK14276 chaperone protein DnaJ; Provisional
Probab=22.73 E-value=53 Score=35.86 Aligned_cols=10 Identities=20% Similarity=-0.160 Sum_probs=5.9
Q ss_pred ccccccceeE
Q 007732 577 WCQVFIFAFC 586 (591)
Q Consensus 577 ~C~~C~GsF~ 586 (591)
.|..|+|.-.
T Consensus 205 ~C~~C~G~g~ 214 (380)
T PRK14276 205 PCQTCHGTGH 214 (380)
T ss_pred CCCCCCCceE
Confidence 3666666544
No 282
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=22.68 E-value=1.8e+02 Score=36.05 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHH
Q 007732 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVA-FFIGFALALV 290 (591)
Q Consensus 248 ~~~~i~w~~~~s~~s~~~~~~~l~~~~~a~~~~-~~~g~~~~~~ 290 (591)
.+|+||+..|-|+.....++..++.-.+.++.+ .++|+++.++
T Consensus 883 lv~lvL~~~f~s~~~pliI~~~IPls~~Ga~~~l~~~g~~l~~~ 926 (1049)
T PRK15127 883 VVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVY 926 (1049)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 345566666666555444444333333333333 3446666654
No 283
>PRK14278 chaperone protein DnaJ; Provisional
Probab=22.60 E-value=49 Score=36.12 Aligned_cols=9 Identities=22% Similarity=0.755 Sum_probs=4.9
Q ss_pred ccccccccc
Q 007732 555 ACKKCNNFH 563 (591)
Q Consensus 555 ~C~~C~Gtg 563 (591)
.|+.|+|+|
T Consensus 158 ~C~~C~G~G 166 (378)
T PRK14278 158 TCDTCGGRG 166 (378)
T ss_pred ecCCccCce
Confidence 455555554
No 284
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=22.37 E-value=5.9e+02 Score=27.00 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=32.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHH
Q 007732 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWC 255 (591)
Q Consensus 205 ~~~~~p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~ 255 (591)
-.+.|-++...++|+|-+=++.=++|+=.. |-.---++|+.-|+++.-.
T Consensus 132 ~~q~WRl~T~~flH~~~~Hl~fNml~l~~l--G~~iE~~~G~~~~l~l~l~ 180 (276)
T PRK10907 132 KFELWRYFTHALLHFSLLHILFNLLWWWYL--GGAVEKRLGSGKLIVITLI 180 (276)
T ss_pred cCCcHHHHhHHHHhCCHHHHHHHHHHHHHH--HHHHHHHHChHHHHHHHHH
Confidence 347799999999999877666655555332 2222246788777665443
No 285
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=22.27 E-value=73 Score=24.77 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=22.7
Q ss_pred cccccccceeeeccccc-----cccccccc--ccceeEEEeeC
Q 007732 556 CKKCNNFHVWIETKKSK-----ASARWCQV--FIFAFCTYMWF 591 (591)
Q Consensus 556 C~~C~Gtg~~~~T~~~~-----skar~C~~--C~GsF~ay~~~ 591 (591)
||.|+..- .+.+.... ...-.|.+ |+-.|++.+.|
T Consensus 2 CP~Cg~~a-~ir~S~~~s~~~~~~Y~qC~N~~Cg~tfv~~~~~ 43 (47)
T PF04606_consen 2 CPHCGSKA-RIRTSRQLSPLTRELYCQCTNPECGHTFVANLEF 43 (47)
T ss_pred cCCCCCee-EEEEchhhCcceEEEEEEECCCcCCCEEEEEEEE
Confidence 89998854 33333222 22344888 99999998764
No 286
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=22.24 E-value=1.8e+02 Score=29.64 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=30.7
Q ss_pred cccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhh
Q 007732 444 SALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 500 (591)
Q Consensus 444 eILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~K 500 (591)
.+||+.. .|++--|| |-+++ ++..|.|... ..+.-.|-.||.|--+|- |..
T Consensus 99 N~lGLgN--AATPlGlK-AMeel-qeiN~~ks~A-s~ami~FLviNta~itLi-PtT 149 (206)
T COG2715 99 NMLGLGN--AATPLGLK-AMEEL-QEINPNKSTA-SNAMIMFLVINTASITLI-PTT 149 (206)
T ss_pred HhcCCCc--ccCchhHH-HHHHH-HHhCCCCCch-hhhhhhhheecccceeee-cHH
Confidence 3578887 66766554 33433 4455666542 456667877777776665 544
No 287
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=22.15 E-value=5.3e+02 Score=31.64 Aligned_cols=12 Identities=8% Similarity=-0.008 Sum_probs=4.7
Q ss_pred hhhheeeehhhh
Q 007732 336 SIYCAWTYVGWL 347 (591)
Q Consensus 336 ~vy~~~~~~gwl 347 (591)
.++-+|.-+.|+
T Consensus 336 LifVrRPpaVll 347 (810)
T TIGR00844 336 VIFLRRIPAVLI 347 (810)
T ss_pred HHHHHHHHHHHH
Confidence 333444333443
No 288
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.06 E-value=4.8e+02 Score=27.03 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHhhhhh
Q 007732 305 SFWTTFFVIFLGGLAF 320 (591)
Q Consensus 305 ~fw~t~~~~~~gg~~f 320 (591)
..|.-+.++++||+.|
T Consensus 70 ~~~~~~~l~~~Gglwy 85 (284)
T PF12805_consen 70 EALEHALLFLAGGLWY 85 (284)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666666443
No 289
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.98 E-value=2e+02 Score=24.79 Aligned_cols=41 Identities=15% Similarity=0.493 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007732 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFL 315 (591)
Q Consensus 269 ~l~~~~~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~ 315 (591)
+-.+|.++++++++.||...-+-+ +++.|+..-..++++++
T Consensus 13 ~~~il~~~~iisfi~Gy~~q~~~~------~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYITQSFSY------TFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhee
No 290
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=21.93 E-value=2.2e+02 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.451 Sum_probs=16.1
Q ss_pred HHHHHh-hhHHHHHHHHHHHHHHHHhhhh
Q 007732 279 VAFFIG-FALALVVVALSGTILLWLYGSF 306 (591)
Q Consensus 279 ~~~~~g-~~~~~~~v~~~~~~~lw~y~~f 306 (591)
+...-| ....+.+++++..-++|+++..
T Consensus 46 ~~~l~gp~~~~i~~i~ii~~g~~~~~g~~ 74 (99)
T PF04956_consen 46 IDWLTGPIGKAIAIIAIIVAGIMMMFGRQ 74 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 334444 5555556666666666766653
No 291
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=21.76 E-value=2e+02 Score=31.10 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007732 263 MVGMFKFLMVLVVAALVAFFIG 284 (591)
Q Consensus 263 ~~~~~~~l~~~~~a~~~~~~~g 284 (591)
|..++.++++++++++++.++-
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~ 22 (409)
T TIGR00540 1 MFKVLFLFLLLIAGIVAGPMIA 22 (409)
T ss_pred ChHHHHHHHHHHHHHHHHHHHc
Confidence 4444444555555545444443
No 292
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=21.74 E-value=5.2e+02 Score=29.92 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHhhhhhhHHHHHHHhhhhhh
Q 007732 273 LVVAALVAFFIGFALALVVVALSGTIL-----LWLYGSFWTTFFVIFLGGLAFK 321 (591)
Q Consensus 273 ~~~a~~~~~~~g~~~~~~~v~~~~~~~-----lw~y~~fw~t~~~~~~gg~~f~ 321 (591)
.|+....++-+|..+-++++|+++--+ -||-.--.+.++++++-|+.+.
T Consensus 326 ~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll 379 (571)
T PRK00293 326 LGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLL 379 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677766777888887544 3554444455666666665544
No 293
>PLN00151 potassium transporter; Provisional
Probab=21.69 E-value=3.6e+02 Score=33.14 Aligned_cols=90 Identities=13% Similarity=0.296 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHH-----HHHHHHH-----HHHHHHHHHH
Q 007732 206 QQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSIL-----SVIAMVG-----MFKFLMVLVV 275 (591)
Q Consensus 206 ~~~~p~v~~~~~~~~~~~~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~-----s~~s~~~-----~~~~l~~~~~ 275 (591)
.|.|=-.-.|+.-.+.|.+ .=||++.-+||.|-=+.|+...++ ++....+ ++-++..++.
T Consensus 467 GQIYIP~vNw~Lmv~~i~v----------~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F 536 (852)
T PLN00151 467 GQIYIPVINWFLLVMCLVV----------VCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVVF 536 (852)
T ss_pred CceeeHHHHHHHHHHHHhh----------eeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 4555555566655555543 448999999998866555543332 2211111 1111222222
Q ss_pred HHHHHHHH----------hhhHHHHHHHHHHHHHHHHhhh
Q 007732 276 AALVAFFI----------GFALALVVVALSGTILLWLYGS 305 (591)
Q Consensus 276 a~~~~~~~----------g~~~~~~~v~~~~~~~lw~y~~ 305 (591)
.++.+.|+ |+.|-++-..++.|+..|.||.
T Consensus 537 ~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~ 576 (852)
T PLN00151 537 LSVELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWNYGS 576 (852)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333343 5667777777888999999984
No 294
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=21.55 E-value=7.1e+02 Score=25.60 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007732 287 LALVVVALSGTILLWLYG 304 (591)
Q Consensus 287 ~~~~~v~~~~~~~lw~y~ 304 (591)
+-.++++++|+++.|.|.
T Consensus 105 ~~~~~~~~~~~~~~~~Yt 122 (276)
T PRK12882 105 PLCLAIALFNSLLLVLYA 122 (276)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566677777778884
No 295
>PRK14287 chaperone protein DnaJ; Provisional
Probab=21.51 E-value=50 Score=35.95 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=25.0
Q ss_pred CcccccccccccccccceeeecccccccccccccccceeE
Q 007732 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
.+.+.+.+.|+.|.|++ .........|..|+|+..
T Consensus 132 ~i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G~ 166 (371)
T PRK14287 132 EIEIPREETCGTCHGSG-----AKPGTKPETCSHCGGSGQ 166 (371)
T ss_pred EEEEeeeccCCCCCCcc-----cCCCCCCcccCCCCCEEE
Confidence 36677888999999977 334445567888887754
No 296
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=21.51 E-value=6.8e+02 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=20.1
Q ss_pred hhhhHhhhhccccccHHHHHHHH
Q 007732 345 GWLGLLLALNLSFVSSDALIFFL 367 (591)
Q Consensus 345 gwlg~~Ls~nlsfls~D~L~~lL 367 (591)
+|+-.+--.|+--...|.+..++
T Consensus 127 ~wlq~ia~~~Plt~~~~~~R~~~ 149 (152)
T TIGR01248 127 DWAQPLIAHQPISPAIEACADLA 149 (152)
T ss_pred HHHHHHHhhCCccHHHHHHHHHh
Confidence 89999999999888888888765
No 297
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.49 E-value=54 Score=31.67 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=24.4
Q ss_pred ccccccccccceeeecccccccccccccccceeEEEe
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCTYM 589 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay~ 589 (591)
...|.+|+-.-.+. .......|+.|++.-+++.
T Consensus 112 ~l~C~~Cg~~~~~~----~~~~l~~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 112 TLVCENCGHEVELT----HPERLPPCPKCGHTEFTRQ 144 (146)
T ss_pred eEecccCCCEEEec----CCCcCCCCCCCCCCeeeeC
Confidence 56799999865432 2456788999999888763
No 298
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=21.45 E-value=2.2e+02 Score=28.40 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Q 007732 254 WCSILSVIAMVGMFKFLMVLVVAALVAFFIG--FALALVVVALSGTI 298 (591)
Q Consensus 254 w~~~~s~~s~~~~~~~l~~~~~a~~~~~~~g--~~~~~~~v~~~~~~ 298 (591)
|..-+.+ |+..||..+++++-+-|+-- ...++.+.++.+++
T Consensus 110 W~~s~~l----Gi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~ 152 (175)
T PF07856_consen 110 WRFSTVL----GIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPV 152 (175)
T ss_pred HHHHHHH----HHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHH
Confidence 6665555 88888888888877777766 56666666655443
No 299
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=21.45 E-value=98 Score=34.72 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=30.3
Q ss_pred hhh-hhchhhhhhc--chhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 007732 232 DCT-IRGIDSFMRM--GTTSFFSVIWCSILSVIA----------MVGMFKFLMVLVVAALVAFF 282 (591)
Q Consensus 232 dc~-~rg~~s~~~~--g~~~~~~i~w~~~~s~~s----------~~~~~~~l~~~~~a~~~~~~ 282 (591)
||- .=|++...|+ |.++||+++=..++.+-+ -.+++|+++-+++.+..-++
T Consensus 68 ~c~~~~gy~AVyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfI 131 (426)
T KOG2592|consen 68 DCGKLLGYKAVYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFI 131 (426)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEc
Confidence 666 6778887774 677777666444443332 24566776666665544333
No 300
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.41 E-value=3.9e+02 Score=24.49 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHH-HHHHHHHhhh
Q 007732 260 VIAMVGMFKFLMVLVVAALVAFFIG------------FALALVVVALS-GTILLWLYGS 305 (591)
Q Consensus 260 ~~s~~~~~~~l~~~~~a~~~~~~~g------------~~~~~~~v~~~-~~~~lw~y~~ 305 (591)
...+.-+--+-+.|++.++++.|+| +|+.++++||+ |+.-.|+|..
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
No 301
>PRK14297 chaperone protein DnaJ; Provisional
Probab=21.23 E-value=54 Score=35.74 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=21.9
Q ss_pred cccccccccccccccceeeeccccccccccccccccee
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAF 585 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF 585 (591)
+.+.+.+.|+.|.|+| .........|..|+|..
T Consensus 143 i~~~r~~~C~~C~G~G-----~~~~~~~~~C~~C~G~G 175 (380)
T PRK14297 143 ISVTRNENCETCNGTG-----AKPGTSPKTCDKCGGTG 175 (380)
T ss_pred EEeeeeccCCCccccc-----ccCCCcCccCCCccCeE
Confidence 5677888899998877 22333455676666664
No 302
>PRK14281 chaperone protein DnaJ; Provisional
Probab=21.21 E-value=59 Score=35.73 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=22.0
Q ss_pred cccccccccccccccceeeecccccccccccccccceeE
Q 007732 548 FGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 548 ~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
+.+.+.+.|+.|.|++. ... ....|..|+|+..
T Consensus 158 i~~~r~~~C~~C~G~G~-----~~~-~~~~C~~C~G~G~ 190 (397)
T PRK14281 158 LKIKKQVPCKECNGTGS-----KTG-ATETCPTCHGSGE 190 (397)
T ss_pred EEEEeeecCCCCCCccc-----CCC-CCccCCCCCCCcE
Confidence 56778889999999762 222 4556777776653
No 303
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=21.19 E-value=2.3e+02 Score=29.48 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=4.6
Q ss_pred HHHHHHHHhcc
Q 007732 177 KAAIELLERQS 187 (591)
Q Consensus 177 ~~~~~~~~~~~ 187 (591)
++..+++++..
T Consensus 108 ~~i~~~i~~~~ 118 (333)
T PF03176_consen 108 KAIRDIIKEAE 118 (333)
T ss_pred HHHHHHHHHhh
Confidence 33334444444
No 304
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=2.3e+02 Score=25.08 Aligned_cols=36 Identities=3% Similarity=-0.006 Sum_probs=28.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNM 476 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~ 476 (591)
|++--+++|++| .++.+||+.|-++..+|+.--..|
T Consensus 2 CRNIk~LfnfdP--PAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 2 CRNIKELFNFDP--PATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred ccchHHHhCCCC--CCCcHHHHHHHHHHHHHhcCCCCc
Confidence 455667889999 899999999998888887544443
No 305
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.08 E-value=2.8e+02 Score=27.33 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhcchhhH
Q 007732 260 VIAMVGMFKFLMVLV--VAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERL 327 (591)
Q Consensus 260 ~~s~~~~~~~l~~~~--~a~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f~~~h~r~ 327 (591)
+..-+-++|+++.++ ++++...++|+.=.+.+++ +++..++|+++...|.|.
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~----------------~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFG----------------AFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 344455677765544 4455556666665555443 355566666666666664
No 306
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.01 E-value=1.6e+02 Score=30.66 Aligned_cols=14 Identities=0% Similarity=-0.135 Sum_probs=6.5
Q ss_pred cccHHHHHHHHhhh
Q 007732 357 FVSSDALIFFLKSK 370 (591)
Q Consensus 357 fls~D~L~~lL~~~ 370 (591)
....||-..+...+
T Consensus 105 iF~~eI~~~l~~~~ 118 (301)
T PF14362_consen 105 IFEKEIDQKLDEIR 118 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555433
No 307
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=20.92 E-value=4.3e+02 Score=27.54 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHH
Q 007732 284 GFALALVVVALSGTI 298 (591)
Q Consensus 284 g~~~~~~~v~~~~~~ 298 (591)
|.++|++.+.|+-|.
T Consensus 41 g~~lGv~~s~li~~~ 55 (249)
T PF10225_consen 41 GISLGVLASLLILLF 55 (249)
T ss_pred hHHHHHHHHHHHHHH
Confidence 555555555554443
No 308
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=5e+02 Score=31.40 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007732 212 ALNHLGHFAKIMLLLSMLW 230 (591)
Q Consensus 212 v~~~~~~~~~~~~~~~~~w 230 (591)
.=.++...|+++||=++.|
T Consensus 160 ~dns~~T~sr~ILLDs~Ll 178 (723)
T KOG3359|consen 160 FDNSLVTLSRFILLDSMLL 178 (723)
T ss_pred hcccchhhhhHHHHhHHHH
Confidence 3355666677766644443
No 309
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=20.91 E-value=5.8e+02 Score=22.44 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHhhhhhhhchhhhhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 007732 224 LLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSV-IAMVGMFKFLMVL 273 (591)
Q Consensus 224 ~~~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~-~s~~~~~~~l~~~ 273 (591)
.++...+.-.-+|.+..-+|- .-+..++|.+++.. .++.+.++.+-..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~a~~~~ 59 (113)
T PF13536_consen 11 FLLIILLIRGRLRDLFRALRR--KPWLWLILAGLLGFGVAYLLFFYALSYA 59 (113)
T ss_pred HHHHHHHHHccHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344444455555444443 33334455555554 4444444443333
No 310
>PRK14280 chaperone protein DnaJ; Provisional
Probab=20.74 E-value=59 Score=35.45 Aligned_cols=9 Identities=11% Similarity=-0.193 Sum_probs=5.1
Q ss_pred cccccceeE
Q 007732 578 CQVFIFAFC 586 (591)
Q Consensus 578 C~~C~GsF~ 586 (591)
|..|+|.-.
T Consensus 203 C~~C~G~g~ 211 (376)
T PRK14280 203 CPTCHGKGK 211 (376)
T ss_pred CCCCCCceE
Confidence 666665543
No 311
>PRK01265 heat shock protein HtpX; Provisional
Probab=20.72 E-value=4.8e+02 Score=28.32 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 007732 430 EDEVVRLL 437 (591)
Q Consensus 430 ~~ev~ril 437 (591)
++|++.++
T Consensus 137 ~~El~aVl 144 (324)
T PRK01265 137 RDEIKAVA 144 (324)
T ss_pred HHHHHHHH
Confidence 34555443
No 312
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=20.64 E-value=2.6e+02 Score=27.78 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007732 256 SILSVIAMVGMFKFLMVLVVAA 277 (591)
Q Consensus 256 ~~~s~~s~~~~~~~l~~~~~a~ 277 (591)
.|+|++|..-...||++|..++
T Consensus 72 lflsltslaiaywwlpsmtftg 93 (233)
T PF10943_consen 72 LFLSLTSLAIAYWWLPSMTFTG 93 (233)
T ss_pred HHHHHHHHHHHHHhccccceeh
Confidence 4799999999999999987554
No 313
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.50 E-value=2.4e+02 Score=33.98 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhh
Q 007732 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAF 320 (591)
Q Consensus 288 ~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~f 320 (591)
|.++.+-+|+.++-.+.-.-++.+.+++||.++
T Consensus 459 g~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~~~~ 491 (806)
T PF05478_consen 459 GNFLMAGVGLSFLFSWFLMLLVLFYFLVGGNTY 491 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444443333333333334445566677777543
No 314
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=20.31 E-value=42 Score=35.25 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=14.8
Q ss_pred ccccccccccccceeeecccccccccccccccceeE
Q 007732 551 SRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 551 sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
.++.-||.|+....-......+..--.|..|+-.|.
T Consensus 29 ~~n~yCP~Cg~~~L~~f~NN~PVaDF~C~~C~eeyE 64 (254)
T PF06044_consen 29 AENMYCPNCGSKPLSKFENNRPVADFYCPNCNEEYE 64 (254)
T ss_dssp HHH---TTT--SS-EE--------EEE-TTT--EEE
T ss_pred HHCCcCCCCCChhHhhccCCCccceeECCCCchHHh
Confidence 456779999998766666677778888999998764
No 315
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=2.6e+02 Score=31.73 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=8.1
Q ss_pred hhhhhHHHHHHHhhhhh
Q 007732 304 GSFWTTFFVIFLGGLAF 320 (591)
Q Consensus 304 ~~fw~t~~~~~~gg~~f 320 (591)
|-|-..+++.++.|.++
T Consensus 305 Gvigl~Gii~~iiG~~~ 321 (436)
T COG1030 305 GVIGLLGIILFIIGLLL 321 (436)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 34444555555555443
No 316
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=20.07 E-value=5.1e+02 Score=26.76 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhhhhchhhhh
Q 007732 220 AKIMLLLSMLWLDCTIRGIDSFM 242 (591)
Q Consensus 220 ~~~~~~~~~~w~dc~~rg~~s~~ 242 (591)
.-++......|-|..=|++|...
T Consensus 44 ~~l~~~a~~~~Nd~~D~~iD~~~ 66 (280)
T TIGR01473 44 TTLAAASANAFNMYIDRDIDKKM 66 (280)
T ss_pred HHHHHHHHHHHHhhcccCcCCCC
Confidence 33455555667777668999864
No 317
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=20.06 E-value=3.6e+02 Score=34.18 Aligned_cols=32 Identities=28% Similarity=0.117 Sum_probs=20.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007732 280 AFFIGFALALVVVALSGTILLWLYGSFWTTFF 311 (591)
Q Consensus 280 ~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~ 311 (591)
+..+-+++.+.+++++|++-||-.---=++.+
T Consensus 992 a~iv~l~v~~i~v~v~G~M~lwgI~LnaVS~v 1023 (1145)
T TIGR00918 992 AGLIVLVLALMTVELFGMMGLLGIKLSAIPVV 1023 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 33344566677888988888886554444444
No 318
>PHA00626 hypothetical protein
Probab=20.01 E-value=67 Score=26.85 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=18.5
Q ss_pred ccccccccceeee-cccccccccccccccceeE
Q 007732 555 ACKKCNNFHVWIE-TKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 555 ~C~~C~Gtg~~~~-T~~~~skar~C~~C~GsF~ 586 (591)
.||.|+-.-+... +-+.......|++|+-.|-
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft 34 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDS 34 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCeec
Confidence 5888887432211 1122355667999987664
Done!