Query 007732
Match_columns 591
No_of_seqs 338 out of 2356
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 99.8 6.4E-21 2.2E-25 176.7 7.7 132 439-588 9-146 (155)
2 2yua_A Williams-beuren syndrom 99.8 1.8E-19 6.2E-24 156.1 8.4 71 440-512 17-87 (99)
3 2dn9_A DNAJ homolog subfamily 99.8 2.2E-19 7.4E-24 148.8 6.9 68 439-508 6-73 (79)
4 2ctq_A DNAJ homolog subfamily 99.8 5.3E-19 1.8E-23 156.5 9.5 69 440-510 20-88 (112)
5 1wjz_A 1700030A21RIK protein; 99.8 3.2E-19 1.1E-23 152.0 5.0 70 438-509 14-89 (94)
6 1hdj_A Human HSP40, HDJ-1; mol 99.8 8.8E-19 3E-23 144.7 6.8 66 440-508 3-68 (77)
7 2ctp_A DNAJ homolog subfamily 99.7 8.7E-19 3E-23 145.0 6.5 67 439-508 6-72 (78)
8 2ys8_A RAB-related GTP-binding 99.7 2.4E-18 8.2E-23 147.0 8.8 75 426-503 11-87 (90)
9 2ctr_A DNAJ homolog subfamily 99.7 1.6E-18 5.4E-23 147.1 7.4 67 439-508 6-72 (88)
10 2ej7_A HCG3 gene; HCG3 protein 99.7 1.2E-18 4.1E-23 145.2 6.5 67 440-508 9-76 (82)
11 2och_A Hypothetical protein DN 99.7 1.6E-18 5.6E-23 141.9 6.9 68 436-508 4-71 (73)
12 2cug_A Mkiaa0962 protein; DNAJ 99.7 1.8E-18 6E-23 146.8 7.3 66 440-508 17-82 (88)
13 2o37_A Protein SIS1; HSP40, J- 99.7 2.2E-18 7.6E-23 147.5 7.6 69 435-508 3-71 (92)
14 2ctw_A DNAJ homolog subfamily 99.7 1.9E-18 6.6E-23 152.4 7.2 67 440-508 17-83 (109)
15 2lgw_A DNAJ homolog subfamily 99.7 4.3E-18 1.5E-22 148.2 8.1 67 440-508 2-69 (99)
16 2dmx_A DNAJ homolog subfamily 99.7 2.6E-18 8.9E-23 146.5 6.6 67 440-508 9-76 (92)
17 1bq0_A DNAJ, HSP40; chaperone, 99.7 1.1E-18 3.6E-23 152.1 3.0 67 440-508 3-69 (103)
18 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 5.6E-18 1.9E-22 148.7 6.0 70 439-510 14-87 (109)
19 3apq_A DNAJ homolog subfamily 99.7 1.5E-17 5E-22 157.3 6.2 67 440-508 2-68 (210)
20 3hho_A CO-chaperone protein HS 99.6 2.4E-16 8.2E-21 149.8 6.6 71 439-509 3-78 (174)
21 3lz8_A Putative chaperone DNAJ 99.6 3.9E-17 1.3E-21 169.0 0.0 70 437-509 25-94 (329)
22 3bvo_A CO-chaperone protein HS 99.6 5.5E-16 1.9E-20 151.3 6.8 69 440-508 43-116 (207)
23 1fpo_A HSC20, chaperone protei 99.6 3.7E-16 1.3E-20 148.2 5.4 69 441-509 2-75 (171)
24 1iur_A KIAA0730 protein; DNAJ 99.6 3.2E-16 1.1E-20 134.3 3.4 64 440-505 16-80 (88)
25 1faf_A Large T antigen; J doma 99.6 9.9E-16 3.4E-20 128.3 5.0 60 440-505 11-72 (79)
26 1gh6_A Large T antigen; tumor 99.6 1.9E-16 6.5E-21 141.7 0.5 61 440-506 8-70 (114)
27 1n4c_A Auxilin; four helix bun 99.6 7.7E-16 2.6E-20 148.1 4.7 63 440-504 117-182 (182)
28 2qwo_B Putative tyrosine-prote 99.6 6.6E-16 2.3E-20 133.9 3.6 61 435-497 27-91 (92)
29 2pf4_E Small T antigen; PP2A, 99.5 6.5E-16 2.2E-20 147.7 1.7 63 440-508 11-75 (174)
30 3uo3_A J-type CO-chaperone JAC 99.5 3.5E-15 1.2E-19 142.9 4.5 66 439-508 10-81 (181)
31 3ag7_A Putative uncharacterize 99.5 6.3E-15 2.2E-19 130.2 2.7 57 440-499 41-104 (106)
32 3apo_A DNAJ homolog subfamily 99.5 6.6E-15 2.3E-19 163.8 1.0 68 440-509 21-88 (780)
33 2guz_A Mitochondrial import in 99.5 2.4E-14 8.2E-19 117.4 3.9 58 440-502 14-71 (71)
34 2y4t_A DNAJ homolog subfamily 99.0 1.5E-10 5.3E-15 115.0 5.8 67 438-506 380-449 (450)
35 2guz_B Mitochondrial import in 98.4 2.1E-07 7.1E-12 76.0 5.7 52 441-498 5-59 (65)
36 2ctt_A DNAJ homolog subfamily 90.5 0.23 7.8E-06 42.8 4.2 38 544-586 19-56 (104)
37 1exk_A DNAJ protein; extended 86.3 0.47 1.6E-05 38.4 3.2 17 547-563 5-21 (79)
38 2pzi_A Probable serine/threoni 83.8 0.65 2.2E-05 51.1 3.9 46 439-494 628-675 (681)
39 1nlt_A Protein YDJ1, mitochond 76.0 0.77 2.6E-05 45.5 1.1 35 546-586 31-65 (248)
40 3lcz_A YCZA, inhibitor of trap 67.1 2.1 7E-05 33.4 1.4 28 552-587 8-35 (53)
41 2bx9_A Anti-trap, AT, tryptoph 58.1 3.7 0.00013 32.0 1.4 28 552-587 8-35 (53)
42 2ctt_A DNAJ homolog subfamily 46.0 8.3 0.00029 32.9 1.8 26 553-586 67-92 (104)
43 1exk_A DNAJ protein; extended 44.6 9.2 0.00032 30.7 1.8 27 553-587 50-76 (79)
44 3pmq_A Decaheme cytochrome C M 42.3 6.3 0.00022 44.7 0.6 36 544-584 182-220 (669)
45 3j1r_A Archaeal adhesion filam 33.5 35 0.0012 23.3 2.9 16 289-304 10-25 (26)
46 3kp9_A Vkorc1/thioredoxin doma 28.6 1.9E+02 0.0065 29.2 8.8 78 244-321 68-179 (291)
47 2js4_A UPF0434 protein BB2007; 27.7 25 0.00085 28.8 1.7 31 553-587 8-38 (70)
48 2hf1_A Tetraacyldisaccharide-1 26.7 27 0.00093 28.4 1.8 31 553-587 8-38 (68)
49 1pft_A TFIIB, PFTFIIBN; N-term 26.6 26 0.0009 26.1 1.6 31 553-586 5-35 (50)
50 2jr6_A UPF0434 protein NMA0874 26.4 28 0.00095 28.3 1.8 31 553-587 8-38 (68)
51 2knc_B Integrin beta-3; transm 26.3 51 0.0017 27.5 3.4 19 283-301 15-33 (79)
52 2jny_A Uncharacterized BCR; st 25.3 30 0.001 28.2 1.8 30 553-586 10-39 (67)
53 2pk7_A Uncharacterized protein 24.6 28 0.00097 28.4 1.5 31 553-587 8-38 (69)
54 2xzf_A Formamidopyrimidine-DNA 24.2 33 0.0011 34.3 2.3 28 554-583 243-270 (271)
55 1qyp_A RNA polymerase II; tran 22.8 64 0.0022 24.7 3.2 36 552-587 14-55 (57)
56 1nlt_A Protein YDJ1, mitochond 21.4 38 0.0013 33.3 2.0 31 551-587 78-108 (248)
57 1pqv_S STP-alpha, transcriptio 21.2 6.5E+02 0.022 25.4 14.5 34 552-585 267-306 (309)
58 2v50_A Multidrug resistance pr 20.8 1E+02 0.0035 36.0 5.8 16 455-470 691-706 (1052)
59 2iub_A CORA, divalent cation t 20.4 4.7E+02 0.016 26.5 10.1 33 287-319 315-353 (363)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=6.4e-21 Score=176.74 Aligned_cols=132 Identities=20% Similarity=0.321 Sum_probs=93.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHHhhhhhhHHhhhhHhhHHH
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE------KAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p------~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ee 512 (591)
..|||+||||++ +++.++||+|||+|++++||||++..+ .|.+.|++|++||++|+||.+|+.||..+....
T Consensus 9 ~~~~y~iLgv~~--~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~ 86 (155)
T 2l6l_A 9 KKDWYSILGADP--SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD 86 (155)
T ss_dssp CSHHHHHHTCCT--TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred CCChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhh
Confidence 479999999999 899999999999999999999997643 377999999999999999999999999776544
Q ss_pred HHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccceeeecccccccccccccccceeEEE
Q 007732 513 LLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCTY 588 (591)
Q Consensus 513 ~~~~f~~f~~~~~~~g~~gffg~gf~~s~~~~e~~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ay 588 (591)
... . .. ....+.-..+... .-....+..|+ |++.+.+............|++|...|...
T Consensus 87 ~~~-----~-~~---~~~~~~~~~m~~~------e~~~~f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~~v~ 146 (155)
T 2l6l_A 87 LRN-----V-GP---VDAQVYLEEMSWN------EGDHSFYLSCR-CGGKYSVSKDEAEEVSLISCDTCSLIIELL 146 (155)
T ss_dssp HHT-----T-CS---SSEEEETTTSEEE------TTTTEEEEECS-SSCEEEEETTHHHHCCEEECSSSSCEEEEE
T ss_pred ccc-----c-cc---ccceeeHHHhccc------cCCcEEEEcCC-CCCeEEecHHHhCCCCEEECCCCceEEEEE
Confidence 322 0 00 0000100011000 01235678996 999765533322122678999999988653
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=156.10 Aligned_cols=71 Identities=34% Similarity=0.583 Sum_probs=66.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhHHH
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ee 512 (591)
.|||+||||++ +++.++||+|||+|++++|||++++++.+.++|++|++||++|+||.+|+.||+.+..++
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e 87 (99)
T 2yua_A 17 TALYDLLGVPS--TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDE 87 (99)
T ss_dssp SHHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHH
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccccc
Confidence 78999999999 899999999999999999999998778999999999999999999999999999765544
No 3
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=148.81 Aligned_cols=68 Identities=43% Similarity=0.593 Sum_probs=64.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +++.++||++||++++++|||+++.++.+.+.|++|++||++|+||.+|+.||..+
T Consensus 6 ~~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 6 SGDYYQILGVPR--NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp CSCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 379999999999 89999999999999999999999877889999999999999999999999999853
No 4
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.3e-19 Score=156.49 Aligned_cols=69 Identities=39% Similarity=0.536 Sum_probs=65.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhH
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ 510 (591)
.|||+||||++ +++.++||+|||+|++++||||+++++.++++|++|++||++|+||.+|+.||+.+..
T Consensus 20 ~d~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 20 EDYYTLLGCDE--LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCHHHHTTCCT--TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 79999999999 8999999999999999999999987788999999999999999999999999997643
No 5
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.76 E-value=3.2e-19 Score=152.05 Aligned_cols=70 Identities=31% Similarity=0.517 Sum_probs=64.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc------hHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~------p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
...|||+||||++ +++.+|||+|||++++++|||+++.+ +.+.+.|++|++||++|+||.+|+.||..+.
T Consensus 14 ~~~~~y~iLgv~~--~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 14 LKKDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCSCHHHHTTCCT--TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 3489999999999 89999999999999999999998642 5688999999999999999999999998654
No 6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.75 E-value=8.8e-19 Score=144.69 Aligned_cols=66 Identities=42% Similarity=0.649 Sum_probs=62.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +++.++||+|||++++++|||+++ ++.+.+.|++|++||++|+||.+|+.||+.+
T Consensus 3 ~~~y~iLgv~~--~as~~~Ik~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 68 (77)
T 1hdj_A 3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYG 68 (77)
T ss_dssp CCSHHHHTCCT--TCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 68999999999 899999999999999999999997 4789999999999999999999999999854
No 7
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-19 Score=145.04 Aligned_cols=67 Identities=45% Similarity=0.601 Sum_probs=63.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +++.++||++||++++++|||+++ .+.+.+.|++|++||++|+||.+|+.||+.+
T Consensus 6 ~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 72 (78)
T 2ctp_A 6 SGDYYEILGVSR--GASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFG 72 (78)
T ss_dssp SCCHHHHHTCCT--TCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 479999999999 899999999999999999999997 4789999999999999999999999999854
No 8
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=147.03 Aligned_cols=75 Identities=32% Similarity=0.523 Sum_probs=67.5
Q ss_pred CCCcH--HHHHHHhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHh
Q 007732 426 EMTSE--DEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKA 503 (591)
Q Consensus 426 ~~ts~--~ev~ril~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~ 503 (591)
.++.. +.+.+++...|||+||||++ +++.+|||+|||+|++++||||++ ++.+.++|++|++||++|+||.+|+.
T Consensus 11 ~~s~~~~~~~~~~~~~~~~y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 11 SFTKEQADAIRRIRNSKDSWDMLGVKP--GASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CCCHHHHHHHHHHHTCSSHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTTCC-CTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHHHHHHHhcCCCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCcccccC
Confidence 34444 56778899999999999999 899999999999999999999997 47899999999999999999999865
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=147.08 Aligned_cols=67 Identities=34% Similarity=0.546 Sum_probs=63.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+||||++ +++.++||++||+|++++|||+++ ++.+.+.|++|++||++|+||.+|+.||..+
T Consensus 6 ~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 6 SGSYYDILGVPK--SASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCSHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 379999999999 899999999999999999999997 5889999999999999999999999999864
No 10
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=145.25 Aligned_cols=67 Identities=43% Similarity=0.612 Sum_probs=62.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +++.++||+|||++++++|||+++.. +.+++.|++|++||++|+||.+|+.||..+
T Consensus 9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 9 VDYYEVLDVPR--QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp CCHHHHTTCCT--TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 79999999999 89999999999999999999999765 468899999999999999999999999853
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.74 E-value=1.6e-18 Score=141.91 Aligned_cols=68 Identities=41% Similarity=0.625 Sum_probs=61.3
Q ss_pred HhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 436 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 436 il~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
|....|||+||||++ +++.++||++||++++++|||++++. .+.|++|++||++|+||.+|+.||+.+
T Consensus 4 m~~~~~~y~iLgl~~--~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 4 MVKETGYYDVLGVKP--DASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp --CCCCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred ccCCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 456689999999999 89999999999999999999999643 689999999999999999999999853
No 12
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.8e-18 Score=146.80 Aligned_cols=66 Identities=38% Similarity=0.537 Sum_probs=62.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +++.++||++||++++++|||+++. +.+++.|++|++||++|+||.+|+.||..+
T Consensus 17 ~d~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 82 (88)
T 2cug_A 17 FDPYRVLGVSR--TASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYG 82 (88)
T ss_dssp SCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 79999999999 8999999999999999999999974 789999999999999999999999999854
No 13
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.2e-18 Score=147.46 Aligned_cols=69 Identities=39% Similarity=0.621 Sum_probs=62.5
Q ss_pred HHhCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 435 ril~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.++...|||+||||++ +++.++||++||+|++++|||+++++ .+.|++|++||++|+||.+|+.||+..
T Consensus 3 ~m~~~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 3 AMVKETKLYDLLGVSP--SANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp -CCSCCHHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ccccCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 3456689999999999 89999999999999999999999754 579999999999999999999999865
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.9e-18 Score=152.38 Aligned_cols=67 Identities=40% Similarity=0.605 Sum_probs=64.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +++.++||+|||+|++++|||++++++.+.++|++|++||++|+||.+|+.||...
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g 83 (109)
T 2ctw_A 17 ESLYHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYG 83 (109)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 78999999999 89999999999999999999999877899999999999999999999999999854
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=148.23 Aligned_cols=67 Identities=42% Similarity=0.609 Sum_probs=62.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +++.++||+|||++++++|||+++.. +.+++.|++|++||++|+||.+|+.||..+
T Consensus 2 ~d~Y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 2 ASYYEILDVPR--SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCHHHHSSSCT--TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 68999999999 89999999999999999999999754 468899999999999999999999999864
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=146.47 Aligned_cols=67 Identities=43% Similarity=0.597 Sum_probs=62.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +++.++||++||+|++++|||+++.. +.+++.|++|++||++|+||.+|+.||+..
T Consensus 9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 9 ANYYEVLGVQA--SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCHHHHHTCCT--TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 79999999999 89999999999999999999999754 578999999999999999999999999853
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.72 E-value=1.1e-18 Score=152.12 Aligned_cols=67 Identities=42% Similarity=0.694 Sum_probs=63.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +++.++||++||+|++++|||+++.++.++++|++|++||++|+||.+|+.||+..
T Consensus 3 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 69 (103)
T 1bq0_A 3 QDYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 69 (103)
T ss_dssp CCSTTTTSSCS--SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTST
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 68999999999 89999999999999999999999876889999999999999999999999999864
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.71 E-value=5.6e-18 Score=148.72 Aligned_cols=70 Identities=31% Similarity=0.424 Sum_probs=64.6
Q ss_pred CCCcccccCcccCCCC-CHHHHHHHHHHHHHhhCCCCCCC---chHHHHHHHHHHHHHHHhhhhhhHHhhhhHhhH
Q 007732 439 CTDHYSALGLSRFENV-DVSILKREYRKKAMLVHPDKNMG---NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (591)
Q Consensus 439 ~~DyYeILGV~~~~~A-s~eeIKKAYRKLAlk~HPDKn~~---~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~~ 510 (591)
..|||+||||++ ++ +.++||+|||++++++|||++++ .+.+.+.|++|++||++|+||.+|+.||+.+..
T Consensus 14 ~~~~y~iLgv~~--~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 14 LENCYDVLEVNR--EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TSCHHHHTTCCG--GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCHHHHcCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 479999999999 78 99999999999999999999975 367889999999999999999999999997754
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.69 E-value=1.5e-17 Score=157.31 Aligned_cols=67 Identities=39% Similarity=0.570 Sum_probs=64.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +|+.++||+|||++++++||||+++++.+.++|++|++||++|+||.+|+.||+..
T Consensus 2 ~~~y~~l~~~~--~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 68 (210)
T 3apq_A 2 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYG 68 (210)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 68999999999 89999999999999999999999877899999999999999999999999999864
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.62 E-value=2.4e-16 Score=149.76 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=62.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH-----HHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
..|||+||||++.++++.++||++||+++++|||||+++.+. |.+.|+.|++||++|+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 479999999999433449999999999999999999976543 67899999999999999999999998654
No 21
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.61 E-value=3.9e-17 Score=169.03 Aligned_cols=70 Identities=34% Similarity=0.541 Sum_probs=0.0
Q ss_pred hCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 437 l~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
+..+|||+||||++ +|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||++|+.||+++.
T Consensus 25 m~~~d~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 25 MELKDYYAILGVQP--TDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCCCCCC-ChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 34589999999999 899999999999999999999997 46899999999999999999999999999743
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.60 E-value=5.5e-16 Score=151.31 Aligned_cols=69 Identities=26% Similarity=0.340 Sum_probs=61.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-----HHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p-----~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++..+++.++||++||+|++++||||+++.+ .|.+.|++|++||++|+||.+|+.||..+
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l 116 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 7999999999955589999999999999999999997543 25678999999999999999999999754
No 23
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.60 E-value=3.7e-16 Score=148.16 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=60.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH-----HHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 441 DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
|||+||||++.+++|.++||++||+++++|||||+++.+. |.+.|+.|++||++|+||.+|+.||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 7999999999333399999999999999999999976533 56799999999999999999999998653
No 24
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.59 E-value=3.2e-16 Score=134.32 Aligned_cols=64 Identities=28% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhHHhhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYD 505 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~eAYEVLsDp~KR~~YD 505 (591)
.++|+||||++ +++.+|||+|||+|+++||||+++++ +.|+++|++|++||++|+|+..|..+.
T Consensus 16 ~~~y~vLgv~~--~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~~ 80 (88)
T 1iur_A 16 KEVTSVVEQAW--KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNA 80 (88)
T ss_dssp HHHHHHHHHTT--SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred HHHHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 57899999999 89999999999999999999999865 458999999999999999987774433
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.58 E-value=9.9e-16 Score=128.34 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=55.1
Q ss_pred CCcccccCcccCCC--CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhh
Q 007732 440 TDHYSALGLSRFEN--VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYD 505 (591)
Q Consensus 440 ~DyYeILGV~~~~~--As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD 505 (591)
.++|+||||++ + ++.++||+|||+|++++|||+++. .++|++|++||++|+|+.+|..++
T Consensus 11 ~~~y~iLgl~~--~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPR--QLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCS--SSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 57899999999 7 999999999999999999999853 589999999999999999998854
No 26
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.57 E-value=1.9e-16 Score=141.72 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=57.0
Q ss_pred CCcccccCcccCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhh
Q 007732 440 TDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~--eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~ 506 (591)
.+||+||||++ +++. ++||+|||+|++++||||++. +++|++|++||++|+||.+|+.||.
T Consensus 8 ~~~Y~iLgv~~--~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 8 LQLMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHTTCCT--TSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhHHHHcCCCC--CCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 68999999999 7777 999999999999999999974 5899999999999999999999996
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.57 E-value=7.7e-16 Score=148.11 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=58.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchH---HHHHHHHHHHHHHHhhhhhhHHhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAY 504 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~---A~e~Fk~I~eAYEVLsDp~KR~~Y 504 (591)
.|||+||||++ +++.++||+|||++++++||||+++.+. |+++|++|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~--~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGG--GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCC--CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 58999999999 8999999999999999999999976543 889999999999999999999987
No 28
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.57 E-value=6.6e-16 Score=133.87 Aligned_cols=61 Identities=26% Similarity=0.437 Sum_probs=54.7
Q ss_pred HHhCC-CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCch---HHHHHHHHHHHHHHHhhh
Q 007732 435 RLLNC-TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFD 497 (591)
Q Consensus 435 ril~~-~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p---~A~e~Fk~I~eAYEVLsD 497 (591)
.++.. .++|++|||++ .++.+|||+|||++|++|||||+++++ .|+++|++|++||++|.+
T Consensus 27 ~~L~~~~~~y~~Lgv~~--~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 27 TVLWAGETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp GTSCTTCCSCCCCCGGG--SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCCeecCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 55555 49999999999 899999999999999999999998654 388999999999999986
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.55 E-value=6.5e-16 Score=147.66 Aligned_cols=63 Identities=29% Similarity=0.378 Sum_probs=55.5
Q ss_pred CCcccccCcccCCCCC--HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 440 TDHYSALGLSRFENVD--VSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 440 ~DyYeILGV~~~~~As--~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
.|||+||||++ +|+ .+|||+|||++|+++||||+++ +++|++|++||++|+||.+|+.||++.
T Consensus 11 ~d~Y~vLGl~~--~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G 75 (174)
T 2pf4_E 11 LQLMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG 75 (174)
T ss_dssp HHHHHTTTCCG--GGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred ccHHHHcCCCC--CCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence 68999999999 666 6999999999999999999964 479999999999999999999999965
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.52 E-value=3.5e-15 Score=142.93 Aligned_cols=66 Identities=30% Similarity=0.432 Sum_probs=60.0
Q ss_pred CCCccccc------CcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHh
Q 007732 439 CTDHYSAL------GLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (591)
Q Consensus 439 ~~DyYeIL------GV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l 508 (591)
..|||+|| |+++ .++|.++||++||+|++++||||+++ +.+.|++|++||++|+||.+|+.||..+
T Consensus 10 ~~d~y~ll~~~~p~~~~~-~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCC-SCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCC-CCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 47999999 4665 37999999999999999999999974 7789999999999999999999999876
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.49 E-value=6.3e-15 Score=130.23 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=50.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCC---ch----HHHHHHHHHHHHHHHhhhhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---NE----KAVEAFKKLQNAYEVLFDSF 499 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~---~p----~A~e~Fk~I~eAYEVLsDp~ 499 (591)
.|||+|||+++ |+.++||+|||++++++||||+++ ++ .|+++|++|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 59999999985 899999999999999999999863 11 47899999999999999985
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.46 E-value=6.6e-15 Score=163.85 Aligned_cols=68 Identities=38% Similarity=0.563 Sum_probs=40.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHHhhhhHhh
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~~YD~~l~ 509 (591)
.|||+||||++ +|+.+|||+|||+|++++||||+++++.|+++|++|++||++|+||.+|+.||+++.
T Consensus 21 ~~~y~~lg~~~--~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 21 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp --CHHHHTCCT--TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 79999999999 899999999999999999999998778899999999999999999999999998653
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.4e-14 Score=117.42 Aligned_cols=58 Identities=24% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhHH
Q 007732 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 502 (591)
Q Consensus 440 ~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp~KR~ 502 (591)
.++|+||||++. +++.++||++||+|++++|||++. + .+.|++|++||++|+|+..|+
T Consensus 14 ~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g-~---~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 14 KEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGG-S---PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTC-C---HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHhhhhhcC
Confidence 578999999972 389999999999999999999974 3 469999999999999987663
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.03 E-value=1.5e-10 Score=114.98 Aligned_cols=67 Identities=37% Similarity=0.512 Sum_probs=56.6
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHHHHhhhhhhHHhhhh
Q 007732 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (591)
Q Consensus 438 ~~~DyYeILGV~~~~~As~eeIKKAYRKLAlk~HPDKn~~~---p~A~e~Fk~I~eAYEVLsDp~KR~~YD~ 506 (591)
...++|++||+.+ .++.++|+++|+++++++|||+.+.+ +.++++|+.|.+||++|+||++|..||+
T Consensus 380 ~~~~~y~~lg~~~--~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 380 QKRDYYKILGVKR--NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HSCCSGGGSCSST--TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred cchhHHHHhCCCc--cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 3569999999999 78899999999999999999999753 3488999999999999999999999997
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.1e-07 Score=75.97 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=45.3
Q ss_pred CcccccCcccCCC---CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 007732 441 DHYSALGLSRFEN---VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (591)
Q Consensus 441 DyYeILGV~~~~~---As~eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEVLsDp 498 (591)
.-|.||||++ + ++.++||++||+|....||||.. + .....+|++|+++|...
T Consensus 5 EA~~ILgv~~--~~~~a~~~~Ik~~yr~Lm~~nhPDkGG-S---~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEE--SKGDLNMDKINNRFNYLFEVNDKEKGG-S---FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCG--GGTCCSHHHHHHHHHHHHHHTCGGGTC-C---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--CcCcCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHHHH
Confidence 3488999999 7 89999999999999999999974 3 56778999999999754
No 36
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.52 E-value=0.23 Score=42.79 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCCcccccccccccccccceeeecccccccccccccccceeE
Q 007732 544 CDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 544 ~e~~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
.+..+.+.+.+.|+.|+|++ .........|+.|+|+..
T Consensus 19 ~~~~i~~~~~~~C~~C~G~G-----~~~g~~~~~C~~C~G~G~ 56 (104)
T 2ctt_A 19 VNKEFTVNIMDTCERCNGKG-----NEPGTKVQHCHYCGGSGM 56 (104)
T ss_dssp SCTTCCSSCCEECSSSSSSS-----SCTTCCCEECSSSSSSCE
T ss_pred CEEEEEeeeeeECCCCcCCc-----cCCCCCCccCCCCCCCEE
Confidence 34567888999999999986 344555678888888754
No 37
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=86.27 E-value=0.47 Score=38.45 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=9.3
Q ss_pred Ccccccccccccccccc
Q 007732 547 PFGESRRIACKKCNNFH 563 (591)
Q Consensus 547 ~~~~sr~I~C~~C~Gtg 563 (591)
.+.+.+.+.|+.|+|++
T Consensus 5 ~i~~~~~~~C~~C~G~G 21 (79)
T 1exk_A 5 EIRIPTLEECDVCHGSG 21 (79)
T ss_dssp SCCCCCEEECGGGTTTS
T ss_pred EEEcccceECCCCcccc
Confidence 34455555666666654
No 38
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=83.75 E-value=0.65 Score=51.05 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=35.5
Q ss_pred CCCcccccCcccCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHH
Q 007732 439 CTDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEV 494 (591)
Q Consensus 439 ~~DyYeILGV~~~~~As~--eeIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~eAYEV 494 (591)
..|||++||++. +... .+|+++||++|++-+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~--~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPF--TSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEES--SHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCC--ChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 468999999987 3333 56999999999976544 4678888888765
No 39
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=76.03 E-value=0.77 Score=45.49 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCcccccccccccccccceeeecccccccccccccccceeE
Q 007732 546 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 546 ~~~~~sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
..+.+.+.+.|+.|+|+| ..... ..+|+.|+|+..
T Consensus 31 k~i~~~r~~~C~~C~G~G-----~~~g~-~~~C~~C~G~G~ 65 (248)
T 1nlt_A 31 AKLALNKQILCKECEGRG-----GKKGA-VKKCTSCNGQGI 65 (248)
T ss_dssp EEEEEEEEEECTTTTTCS-----BSTTT-CCCCTTSSSSSC
T ss_pred EEEEeeEEEeCCCCcCcc-----CCCCC-CccCCCCCCCcE
Confidence 457788888999999976 33333 478888888653
No 40
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=67.07 E-value=2.1 Score=33.44 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=20.9
Q ss_pred cccccccccccceeeecccccccccccccccceeEE
Q 007732 552 RRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
....|+.|+|+|..+ ...|+.|+|+...
T Consensus 8 ~~~~C~~C~GsG~~i--------~~~C~~C~G~G~v 35 (53)
T 3lcz_A 8 LETTCPNCNGSGREE--------PEPCPKCLGKGVI 35 (53)
T ss_dssp HEEECTTTTTSCEET--------TEECTTTTTSSEE
T ss_pred eeccCcCCcccccCC--------CCcCCCCCCcEEE
Confidence 356899999988432 2669999998654
No 41
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=58.14 E-value=3.7 Score=31.96 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=20.8
Q ss_pred cccccccccccceeeecccccccccccccccceeEE
Q 007732 552 RRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
....|+.|+|++.. . ...|+.|+|....
T Consensus 8 ~~~~C~~C~GsG~~-----~---~~~C~~C~G~G~v 35 (53)
T 2bx9_A 8 LEVACPKCERAGEI-----E---GTPCPACSGKGVI 35 (53)
T ss_dssp HEEECTTTTTSSEE-----T---TEECTTTTTSSEE
T ss_pred ccccCCCCcceecc-----C---CCCCccCCCCccE
Confidence 45689999998832 1 2579999998654
No 42
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.97 E-value=8.3 Score=32.90 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=13.7
Q ss_pred ccccccccccceeeecccccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
...|+.|+|+|..+ ...|+.|+|.-.
T Consensus 67 ~~~C~~C~G~G~~i--------~~~C~~C~G~G~ 92 (104)
T 2ctt_A 67 RSTCRRCGGRGSII--------ISPCVVCRGAGQ 92 (104)
T ss_dssp EEECSSSSSSSEEC--------SSCCSSSSSCSE
T ss_pred EEECCcCCCcceEC--------CCcCCCCCCeeE
Confidence 34566666655221 134777776544
No 43
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=44.62 E-value=9.2 Score=30.68 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=14.9
Q ss_pred ccccccccccceeeecccccccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
...|+.|+|.+..+ ...|..|+|.-..
T Consensus 50 ~~~C~~C~G~G~~~--------~~~C~~C~G~G~~ 76 (79)
T 1exk_A 50 QQTCPHCQGRGTLI--------KDPCNKCHGHGRV 76 (79)
T ss_dssp EEECTTTTTSSEEC--------SSBCGGGTTSSEE
T ss_pred eeECcCCCCccEEC--------CCcCCCCCCeEEE
Confidence 34566666655221 2357777776544
No 44
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=42.26 E-value=6.3 Score=44.66 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=27.9
Q ss_pred CCCCcccccccccccccccceeeecccccc---cccccccccce
Q 007732 544 CDDPFGESRRIACKKCNNFHVWIETKKSKA---SARWCQVFIFA 584 (591)
Q Consensus 544 ~e~~~~~sr~I~C~~C~Gtg~~~~T~~~~s---kar~C~~C~Gs 584 (591)
.+..+.+.+...|..|+|++ ...++ ...+|..|+|+
T Consensus 182 ~~k~i~v~~~~~C~tCHGsG-----A~~Gt~~~~~~tC~tCHGs 220 (669)
T 3pmq_A 182 LAYTRNLVSIDTCNSCHSNL-----AFHGGRYNQVETCVTCHNS 220 (669)
T ss_dssp CCCCCCCCCSHHHHHHHSSC-----CTTTTTSCSSSCSTTTSST
T ss_pred CceEEEeccCCcCCCCCCCC-----CcCCccCcCCccCCCCCCC
Confidence 34567888999999999987 33333 57899999987
No 45
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=33.47 E-value=35 Score=23.26 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 007732 289 LVVVALSGTILLWLYG 304 (591)
Q Consensus 289 ~~~v~~~~~~~lw~y~ 304 (591)
+.++++.|-+++|+|.
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4467777778888774
No 46
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=28.61 E-value=1.9e+02 Score=29.21 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred cc-hhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhHHHH------------HHHHHHHHHHHHh
Q 007732 244 MG-TTSFFSVIWCSILSVIAMVGM-------FKFLMVLVVAALVAFFIGFALALV------------VVALSGTILLWLY 303 (591)
Q Consensus 244 ~g-~~~~~~i~w~~~~s~~s~~~~-------~~~l~~~~~a~~~~~~~g~~~~~~------------~v~~~~~~~lw~y 303 (591)
+| |.++|-+++-..+-++++..+ .+++..++.+.+.+.|..|...+. ++.++-++++|+.
T Consensus 68 fGiP~~~~G~~~y~~v~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~fs~yL~y~~~~vi~a~C~~C~~~~~i~~~l~~~~ 147 (291)
T 3kp9_A 68 LGIPTAAVGLLGFLGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLGLVT 147 (291)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHCC--CTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Q ss_pred hh-------------hhhHHHHHHHhhh-hhh
Q 007732 304 GS-------------FWTTFFVIFLGGL-AFK 321 (591)
Q Consensus 304 ~~-------------fw~t~~~~~~gg~-~f~ 321 (591)
-- .-+.+++.++|++ +|.
T Consensus 148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (291)
T 3kp9_A 148 VLGHRWLDGGKLAFSYILVAFLTLVTTIGVYA 179 (291)
T ss_dssp HSSCHHHHCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
No 47
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.68 E-value=25 Score=28.80 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=21.7
Q ss_pred ccccccccccceeeecccccccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
-..||.|+|.=.+. .......|..|+..|.=
T Consensus 8 iL~CP~ck~~L~~~----~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 8 ILVCPVCKGRLEFQ----RAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCBCTTTCCBEEEE----TTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCEEe----CCCCEEEcCCCCceecC
Confidence 46899999964321 22456789999988863
No 48
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.69 E-value=27 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=21.6
Q ss_pred ccccccccccceeeecccccccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
-..||.|+|.=.+. .......|..|+..|.=
T Consensus 8 iL~CP~ck~~L~~~----~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 8 ILVCPLCKGPLVFD----KSKDELICKGDRLAFPI 38 (68)
T ss_dssp ECBCTTTCCBCEEE----TTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCeEe----CCCCEEEcCCCCcEecC
Confidence 45899999964321 22456789999988863
No 49
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.63 E-value=26 Score=26.07 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=20.2
Q ss_pred ccccccccccceeeecccccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
...|+.|++..+. . ........|..|+-.+.
T Consensus 5 ~~~CP~C~~~~l~-~--d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELI-Y--DPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEE-E--ETTTTEEEESSSCCBCC
T ss_pred cEeCcCCCCcceE-E--cCCCCeEECcccCCccc
Confidence 4579999884322 1 23345688999987653
No 50
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.42 E-value=28 Score=28.35 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=21.7
Q ss_pred ccccccccccceeeecccccccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
-..||.|+|.=.+. .......|..|+..|.=
T Consensus 8 iL~CP~ck~~L~~~----~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 8 ILVCPVTKGRLEYH----QDKQELWSRQAKLAYPI 38 (68)
T ss_dssp CCBCSSSCCBCEEE----TTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCeEe----CCCCEEEcCCCCcEecC
Confidence 46899999964321 22456789999988863
No 51
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.33 E-value=51 Score=27.52 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=11.5
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 007732 283 IGFALALVVVALSGTILLW 301 (591)
Q Consensus 283 ~g~~~~~~~v~~~~~~~lw 301 (591)
+|...|++++||+-+++.+
T Consensus 15 ~gvi~gilliGllllliwk 33 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566677777775544443
No 52
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.34 E-value=30 Score=28.18 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=21.3
Q ss_pred ccccccccccceeeecccccccccccccccceeE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFC 586 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~ 586 (591)
-..||.|+|.=.+ ........|..|+..|.
T Consensus 10 iL~CP~ck~~L~~----~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 10 VLACPKDKGPLRY----LESEQLLVNERLNLAYR 39 (67)
T ss_dssp CCBCTTTCCBCEE----ETTTTEEEETTTTEEEE
T ss_pred HhCCCCCCCcCeE----eCCCCEEEcCCCCcccc
Confidence 4589999995432 12245678999998886
No 53
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.55 E-value=28 Score=28.37 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=21.7
Q ss_pred ccccccccccceeeecccccccccccccccceeEE
Q 007732 553 RIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 553 ~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
-..||.|+|.=.+ ........|..|+..|.=
T Consensus 8 iL~CP~ck~~L~~----~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 8 ILACPICKGPLKL----SADKTELISKGAGLAYPI 38 (69)
T ss_dssp TCCCTTTCCCCEE----CTTSSEEEETTTTEEEEE
T ss_pred heeCCCCCCcCeE----eCCCCEEEcCCCCcEecC
Confidence 4689999996432 122456789999988863
No 54
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=24.23 E-value=33 Score=34.26 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=18.5
Q ss_pred cccccccccceeeecccccccccccccccc
Q 007732 554 IACKKCNNFHVWIETKKSKASARWCQVFIF 583 (591)
Q Consensus 554 I~C~~C~Gtg~~~~T~~~~skar~C~~C~G 583 (591)
-+|+.|++.=..+.- ..-...+|+.|+.
T Consensus 243 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKV--AGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEE--CCCceEECCCCCC
Confidence 579999886322211 3345678999986
No 55
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.79 E-value=64 Score=24.68 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=23.0
Q ss_pred cccccccccccceeeeccc------ccccccccccccceeEE
Q 007732 552 RRIACKKCNNFHVWIETKK------SKASARWCQVFIFAFCT 587 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~------~~skar~C~~C~GsF~a 587 (591)
..+.|++|+....++.... ..+.-..|..|+-++-.
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 3688999999665544322 11233569999987643
No 56
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=21.39 E-value=38 Score=33.33 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=19.6
Q ss_pred ccccccccccccceeeecccccccccccccccceeEE
Q 007732 551 SRRIACKKCNNFHVWIETKKSKASARWCQVFIFAFCT 587 (591)
Q Consensus 551 sr~I~C~~C~Gtg~~~~T~~~~skar~C~~C~GsF~a 587 (591)
.....|+.|+|+|..+ .....|..|+|.-..
T Consensus 78 ~~~~~C~~C~G~G~~i------~~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 78 RFQTECDVCHGTGDII------DPKDRCKSCNGKKVE 108 (248)
T ss_dssp EEECSCTTCSSSSSCC------CTTSBCSSSTTSCEE
T ss_pred EEEEcCCCCCCcCEEe------ccCCCCcccCCCceE
Confidence 3556788888866322 124569999887654
No 57
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=21.24 E-value=6.5e+02 Score=25.43 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=22.1
Q ss_pred cccccccccccceeeeccc------cccccccccccccee
Q 007732 552 RRIACKKCNNFHVWIETKK------SKASARWCQVFIFAF 585 (591)
Q Consensus 552 r~I~C~~C~Gtg~~~~T~~------~~skar~C~~C~GsF 585 (591)
....|++|+....++..-. ....-..|..|+.++
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 3568999998776665421 113335699998764
No 58
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=20.75 E-value=1e+02 Score=35.99 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHhh
Q 007732 455 DVSILKREYRKKAMLV 470 (591)
Q Consensus 455 s~eeIKKAYRKLAlk~ 470 (591)
+.+++++.=.++..+.
T Consensus 691 d~~~L~~~a~~l~~~l 706 (1052)
T 2v50_A 691 GHEVLLQARNKFLMLA 706 (1052)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5566666555554443
No 59
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.41 E-value=4.7e+02 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=14.5
Q ss_pred HHHHHHHHHHH-----H-HHHHhhhhhhHHHHHHHhhhh
Q 007732 287 LALVVVALSGT-----I-LLWLYGSFWTTFFVIFLGGLA 319 (591)
Q Consensus 287 ~~~~~v~~~~~-----~-~lw~y~~fw~t~~~~~~gg~~ 319 (591)
|.-||.|++|+ + +=|-||++|+.++.+++++.+
T Consensus 315 P~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~ 353 (363)
T 2iub_A 315 PLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIM 353 (363)
T ss_dssp HHHHHTTSCC--------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 44445555553 2 238899888777665555433
Done!