Query 007733
Match_columns 591
No_of_seqs 155 out of 1027
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1302 Vacuolar sorting prote 100.0 2E-102 3E-107 806.7 49.2 576 1-586 1-599 (600)
2 PF00995 Sec1: Sec1 family; I 100.0 8.7E-92 1.9E-96 781.5 32.9 537 35-586 1-564 (564)
3 KOG1300 Vesicle trafficking pr 100.0 2.5E-83 5.4E-88 661.3 43.9 542 17-587 3-582 (593)
4 KOG1299 Vacuolar sorting prote 100.0 2.2E-82 4.8E-87 631.6 41.9 522 17-588 3-547 (549)
5 COG5158 SEC1 Proteins involved 100.0 7.7E-81 1.7E-85 657.1 42.1 551 16-589 3-577 (582)
6 KOG1301 Vesicle trafficking pr 100.0 9.7E-76 2.1E-80 591.1 37.4 545 13-589 8-614 (621)
7 PF12327 FtsZ_C: FtsZ family, 43.2 64 0.0014 26.6 5.4 39 536-574 35-76 (95)
8 PRK08883 ribulose-phosphate 3- 40.1 41 0.00088 32.6 4.4 41 539-585 167-207 (220)
9 PLN02334 ribulose-phosphate 3- 38.5 37 0.0008 33.1 3.9 40 540-585 175-214 (229)
10 PRK05581 ribulose-phosphate 3- 35.8 50 0.0011 31.7 4.3 40 540-585 171-210 (220)
11 PF14071 YlbD_coat: Putative c 35.1 26 0.00056 30.5 1.8 14 280-293 32-45 (124)
12 cd00564 TMP_TenI Thiamine mono 32.1 63 0.0014 30.0 4.3 42 539-586 150-191 (196)
13 PRK00043 thiE thiamine-phospha 28.2 73 0.0016 30.2 4.0 37 540-582 161-197 (212)
14 cd07664 BAR_SNX2 The Bin/Amphi 27.1 3E+02 0.0065 26.9 8.0 60 278-338 13-72 (234)
15 cd07665 BAR_SNX1 The Bin/Amphi 22.7 3.8E+02 0.0081 26.3 7.7 59 278-337 13-71 (234)
16 TIGR01163 rpe ribulose-phospha 22.2 1.2E+02 0.0025 28.7 4.2 42 540-587 166-207 (210)
17 TIGR03128 RuMP_HxlA 3-hexulose 20.6 1.5E+02 0.0033 27.9 4.6 36 540-581 159-194 (206)
18 PF11698 V-ATPase_H_C: V-ATPas 20.6 1.1E+02 0.0023 26.6 3.1 71 285-356 26-96 (119)
19 PTZ00170 D-ribulose-5-phosphat 20.3 1.2E+02 0.0026 29.6 3.8 41 539-585 173-213 (228)
20 cd00429 RPE Ribulose-5-phospha 20.2 1.2E+02 0.0025 28.7 3.7 42 540-587 167-208 (211)
No 1
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-102 Score=806.71 Aligned_cols=576 Identities=43% Similarity=0.694 Sum_probs=518.8
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCceEEEEcCCCccccccccCchhHHhcCce-eEEccCCCCC-CCCce
Q 007733 1 MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLSAEPVQ-TDCAK 78 (591)
Q Consensus 1 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~l~~~~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~~~~~~-~~~~~ 78 (591)
|++++.-.+...++..+|+.++++|+++|+++||.|.||+|+.++++|+++.+++.|+++||. +..++.++.+ .++.+
T Consensus 1 m~~~~~d~~~~~~l~~lq~~a~~eL~~lLds~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~ 80 (600)
T KOG1302|consen 1 MAPHLSDLGADLNLQGLQEVARRELISLLDSLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQ 80 (600)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHhcCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCe
Confidence 777777667789999999999999999999999999999999999999999999999999999 8888876633 34678
Q ss_pred EEEEECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceeeEEEEcccceecCCCeEEeecccc
Q 007733 79 VVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLA 158 (591)
Q Consensus 79 ~Iy~i~pt~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~v~e~~~df~pld~~lfsl~~~~~ 158 (591)
.|||+||+.++++.|++++++.......+.|||+|.|+.+..|...|+++|+++.+.+.|++++++|+|.|++||+.|++
T Consensus 81 ~vy~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~~P~~~~~c~~~Lee~gv~~~v~~~e~~~~~lpld~DllSlEl~~~ 160 (600)
T KOG1302|consen 81 VVYFVRPRLENMQLIAEHVENVQRDGFTRDYHVIFVPRRSSLCETLLEEEGVYGLVLVEEQILDLLPLDGDLLSLELPNS 160 (600)
T ss_pred EEEEEcCchHHHHHHHHHHhhhhhchhcceeEEEEeccHHHHHHHHHHhcccccccccchhhhhhccccccchhccchHH
Confidence 99999999999999999999865555678999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHcCCCCeEEEeCCchHHHHHHHHHhhhccCCCCCCCCCCCcceEEEEecCCCCcc
Q 007733 159 HKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVT 238 (591)
Q Consensus 159 ~~~~~~~~d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~~a~~va~~l~~l~~~~~~~~~~~~~~~~~~LiIlDR~~D~~T 238 (591)
|.++|+++|.+.+..+|+++.+++.++|.||.|++.|+.|+++++++.++..+.....++. .+.+++||++||++|++|
T Consensus 161 ~~d~~~~gd~s~l~~va~~l~~LQ~~~G~ip~v~g~G~~ak~~~~l~~~l~~e~~t~n~~~-~~~~~~liLlDR~~D~vt 239 (600)
T KOG1302|consen 161 FLDLYLDGDQSSLYHVADALVSLQRLYGIIPKVYGKGECAKRVWELLKKLEREEATENNGD-RPEIDHLILLDRDVDPVT 239 (600)
T ss_pred HHHHhhccccchhHHHHHHHHHHHHhhCCCcceeeccHHHHHHHHHHHHHhhccccccCCC-ccccceEEEEeccCcccc
Confidence 9999999999999999999999999999999999999999999999998887665433322 467889999999999999
Q ss_pred cccchhhhhHHhhhhhcccCCeEEeCcccccccc-CC-----CCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHH
Q 007733 239 PMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQ-QD-----GKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMK 312 (591)
Q Consensus 239 Pll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~-~~-----~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~ 312 (591)
||+||.||+|++||+|||++|.|+++++.....+ .+ ...+.+.++..|++|+++|++||+.|++.+++++++++
T Consensus 240 pLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~lsk~ak~l~ 319 (600)
T KOG1302|consen 240 PLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPLLSKKAKELQ 319 (600)
T ss_pred hhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886643221 00 12355666678999999999999999999999999999
Q ss_pred HHHHhhccccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcchHHHHHHHHHh
Q 007733 313 QDYTEVTTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIH 388 (591)
Q Consensus 313 ~~~~~~~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~li~ 388 (591)
.+++.+++. ++++||++||++||++++ ++.|+++|+.+++.+++..|.+.+++||+++.|.|.++..++|+++|.
T Consensus 320 ~~~~~r~~~-~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~~~~IeElI~ 398 (600)
T KOG1302|consen 320 AQYETRRQA-MSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKDFDYIEELIY 398 (600)
T ss_pred HHHHhhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccchHHHHHHHh
Confidence 999988887 899999999999999976 999999999999999999999999999999999999888999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhchhHHHHHHHHHhcCCcccccCCc---------ChHHHHhhc
Q 007733 389 KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKS---------NWQLVKRAL 459 (591)
Q Consensus 389 ~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~l~~l~~~gl~~~~~~~~---------~~~~~~k~l 459 (591)
...+...+|||+||.|++.+|+++++++.++++++|.||++++.+|.||+++|+++.+..+. .|+.+++.+
T Consensus 399 ~~~~~~~vLRLicL~Slt~~Gl~~k~l~~~rr~~lqsYG~ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl 478 (600)
T KOG1302|consen 399 QEVPLNNVLRLICLLSLTCNGLKPKDLDHYRREYLQSYGYEHLLTLQNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTL 478 (600)
T ss_pred hcccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccccCCCcchhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998876543 799999999
Q ss_pred Ccc-cccCCCCCCCccccccCccccHHHHHHHHHHc-CCCchHHHhhcCCCCccccccCCCCCCCCCCCCCCCCCCCCCC
Q 007733 460 QLV-EDTDTANPNDISYVFSGYAPLSIRLVQNAIRS-GWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKR 537 (591)
Q Consensus 460 ~l~-~~~~~~~~~~~~~~~s~y~Pl~~rive~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 537 (591)
++. ++.++.+|+|++|+||||+|+++||+|.+++. +|.+..+....+||++|+.......+..+.+. ++...
T Consensus 479 ~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~------~~g~~ 552 (600)
T KOG1302|consen 479 PLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNN------SPGAL 552 (600)
T ss_pred CCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhccccc------CCCCc
Confidence 999 77888999999999999999999999999998 78887778889999999765543222211110 11237
Q ss_pred cEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhh
Q 007733 538 SLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETF 586 (591)
Q Consensus 538 ~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l 586 (591)
+.++|||+||+||+||||+|++++.. +++|+|+||+++||.++|+.+
T Consensus 553 R~~lVff~GG~T~~EIAalr~l~~~~--~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 553 RVTLVFFLGGCTYAEIAALRFLAKLE--GYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred ceEEEEEECCccHHHHHHHHHHHhhc--CceEEEEeccccchHHHHHhh
Confidence 89999999999999999999999997 799999999999999999976
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=8.7e-92 Score=781.55 Aligned_cols=537 Identities=37% Similarity=0.593 Sum_probs=412.6
Q ss_pred ceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChHHHHHHHHHhhccccCCCCceEEE
Q 007733 35 KKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFL 111 (591)
Q Consensus 35 ~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~~i~~i~~~~~~~~~~~~y~~~~i 111 (591)
||+||+|+.++++||++|++++|+++||+ ++.|+ |+|++. .+|||||+|+.+++++|+++++++ +|++|||
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~--~~~iy~i~p~~~~i~~i~~~~~~~----~~~~~~i 74 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPS--MDAIYFIRPTPENIKRIIKDLKNP----PYRSYHI 74 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTT--SEEEEEE-S-HHHHHHHHHHCHST----SBSEEEE
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCC--cceEEEEcCcHHHHHHHHHHHHhc----ccccEEE
Confidence 99999999999999999999999999999 89997 467754 789999999999999999999985 9999999
Q ss_pred EEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccc-cCCCchHHHHHHHHHHHHHHcCCCC
Q 007733 112 YFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQV-DGDASSLWHIAKAIHKLEFTFGLIP 189 (591)
Q Consensus 112 ~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~-~~d~~~l~~ia~~L~~l~~~~g~~P 189 (591)
+|+|+.+..+.+.|++.++.+.|+ +.|+++||+|+|+|+|||++|++|..+|. +++.+.+..+|++|+++|.++|.+|
T Consensus 75 ~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~~~~l~~~a~~L~~l~~~~g~~p 154 (564)
T PF00995_consen 75 FFTPRVSESLLEILAESGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGDESSLQRIADSLLSLQLTLGEIP 154 (564)
T ss_dssp EESS---HHHHHHHHHSCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEehhhhhHHHHhhhhcCccceecccccceeEEEEccchhhhhcccchHHHHhccccchhHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998 99999999999999999999999999999 8899999999999999999999999
Q ss_pred eEEEeCC-chHHHHHHHHHhhhc-cCC---CCCC---CCCCCcceEEEEecCCCCcccccchhhhhHHhhhhhcccCCeE
Q 007733 190 NVRAKGK-ASVRVAEILNRMQTE-EPV---SLSD---MNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSV 261 (591)
Q Consensus 190 ~I~~~g~-~a~~va~~l~~l~~~-~~~---~~~~---~~~~~~~~LiIlDR~~D~~TPll~~~TYqall~d~~~I~~~~v 261 (591)
.|||+|+ .|++||++|.++.++ ... ...+ ....++++|||+||++|++|||+||||||||+||+|||++|.|
T Consensus 155 ~I~~~g~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~d~~~i~~~~v 234 (564)
T PF00995_consen 155 NIRYKGNSNAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTYEGLIDDLFGINNNKV 234 (564)
T ss_dssp EEEE-TTCHHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHHHHSTEBTTEE
T ss_pred eEEEeCchhHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCceeeeEHHhhhhhcCCEe
Confidence 9999999 999999999854333 210 0011 1123457899999999999999999999999999999999999
Q ss_pred EeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHH-HhhccccccHHHHHHHHHhcCCcch
Q 007733 262 ELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDY-TEVTTMSQTVSELKDFVKKLNSLPE 340 (591)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~~~~~~~~~~e~~~~v~~lp~~~~ 340 (591)
+++.+..+++ .++++.||++|++|+++||+||++|++.|+++++++++++ ...++. .++++|+++|++||++++
T Consensus 235 ~~~~~~~~~~----~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~lp~~~~ 309 (564)
T PF00995_consen 235 EIPDEINSGE----NKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEYEKSRSKS-KSIQEMKEFVKKLPELQE 309 (564)
T ss_dssp EEEECSSSSE----CEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHCH----ST-TTHHCHHHHHCCHHHHHH
T ss_pred ccccCCCccc----cceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhhccccchh-hHHHHHHHHHHHChHHHH
Confidence 9986542221 2479999999999999999999999999999999999876 233333 699999999999999976
Q ss_pred ----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcchH-HHHHHHHH-hcCCChHHHHHHHHHHHHhcCCCChhH
Q 007733 341 ----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDIC-FEYIEEMI-HKQEPLNKVLRLLILFSVTNSGLPKKQ 414 (591)
Q Consensus 341 ----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~-~~~i~~li-~~~~~~~d~lRLl~L~~l~~~g~~~~~ 414 (591)
++.|++||++|++.+++++|.+++++||+|++|.+.++. .+.|+++| ..+.+.+++|||+|||++++ |+++++
T Consensus 310 ~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~~~~~~~~d~LRLl~L~sl~~-g~~~~~ 388 (564)
T PF00995_consen 310 QQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELINSRKISIEDKLRLLCLYSLTN-GIKGKD 388 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHHSTTSTHHHHHHHHHHHHHHH--HTCBH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhhccCCCHHHHHHHHHHHHHHh-cCCcch
Confidence 999999999999999999999999999999999776654 67799999 68899999999999999998 999999
Q ss_pred HHHHHHHHHHH-hchhHHHHHHHHHhcCCcccccCCcChHHHHhhcCcc-c---ccCCCCCCCccccccCccccHHHHHH
Q 007733 415 FDYLRRELLHS-YGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLV-E---DTDTANPNDISYVFSGYAPLSIRLVQ 489 (591)
Q Consensus 415 ~~~l~~~~~~~-~g~~~~~~l~~l~~~gl~~~~~~~~~~~~~~k~l~l~-~---~~~~~~~~~~~~~~s~y~Pl~~rive 489 (591)
++.+++.+.+. ||.+++.+|.+|+++|+...+.+.+.|+.+++.++++ + ......+++.+|+|+||+|+++|+|+
T Consensus 389 ~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~y~Pli~rlve 468 (564)
T PF00995_consen 389 YDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNSSNFQSIRKKLNLISKFNDKNDKNNPKDISYVYSGYAPLIVRLVE 468 (564)
T ss_dssp HHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTTS--CTTC-TT---HHTTCCCSSSSCSCCCSTTCT---HHHHHHH
T ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCccchhhhcccccccccccccccccccccccchhcccccHHHHHHH
Confidence 99999999999 9999999999999999987663101566677777765 1 23345678999999999999999999
Q ss_pred HHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCCCCCC--CCCCCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCc
Q 007733 490 NAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQG--LSSSIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAY 567 (591)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~ 567 (591)
.++++.|+..+.+ +.+....-... +...+........ +.+...+.+++||||||||||+|++++|+++++.+.++
T Consensus 469 ~~~~~~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~~~~ 545 (564)
T PF00995_consen 469 DLIKGKLDKEEEF-PYLDPKPKNLN--GSSFSLRSSKPSRSKTQPSNKPRKRVIVFFVGGVTYSEIRALRELSKKLGPGK 545 (564)
T ss_dssp HHHTTHSHHTTTS-EBSSTCC-------SSSSSS-------------S-SSEEEEEEETEBEHHHHHHHHHHHTTSSSSS
T ss_pred HHhhccCCccccc-ccccccccccC--CCCcccccccccccccccccCCCCEEEEEEEcCCcHHHHHHHHHHHHhhCCCc
Confidence 9998666411111 11111110000 0000000000000 01111237889999999999999999999999973349
Q ss_pred eEEEEecCCcCchhHHHhh
Q 007733 568 DVIVGTTKIISGNSLAETF 586 (591)
Q Consensus 568 ~iiigsT~il~~~~fl~~l 586 (591)
+|+||||+|+||++||++|
T Consensus 546 ~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 546 EIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp EEEEEESSBE-HHHHHHHH
T ss_pred EEEEEeCCccCHHHHHHhC
Confidence 9999999999999999986
No 3
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-83 Score=661.31 Aligned_cols=542 Identities=20% Similarity=0.312 Sum_probs=428.0
Q ss_pred HHHHHHHHHH-HHhhcC--CCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChHHH
Q 007733 17 IREQSQRDLV-NILKNI--RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFISM 90 (591)
Q Consensus 17 l~~~~~~~l~-~~l~~~--~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~~i 90 (591)
+++.+++.++ .+++.- ..|||||+|+.+++++|+||+++++.+.||+ ++.++ |+|.++ +.||||++|+.+++
T Consensus 3 l~~l~~~kil~~v~~~~k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~S--meaIY~i~pt~~~V 80 (593)
T KOG1300|consen 3 LKELVKKKILEDVLRVEKKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPS--MEAIYFITPTEESV 80 (593)
T ss_pred hHHHHHHHHHHHhcccCCCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCc--ceeEEEecCchhhH
Confidence 5666666666 777632 3599999999999999999999999999999 89886 689876 89999999999999
Q ss_pred HHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccccCC--
Q 007733 91 RFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDGD-- 167 (591)
Q Consensus 91 ~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~~~d-- 167 (591)
+.++.|+.. ..+.|+.+||||++-++....+.|........|+ +.+++++|+|+|+++|+++.|++|..+|.+..
T Consensus 81 ~~~i~Df~~--~~~~Y~~ahifF~~~c~~~lf~~l~ks~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~~a~ 158 (593)
T KOG1300|consen 81 DCLIKDFEG--RSPLYKAAHIFFLDPCPDPLFNKLSKSRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPDNAA 158 (593)
T ss_pred HHHHHhhcc--cCcccceEEEEEcCCCCHHHHHHHHhhhHhhhhhhheecccccceecceeeeecChhhHHHhcCchhhh
Confidence 999999973 2469999999999988888888888777777775 99999999999999999999999999998653
Q ss_pred --CchHHHHHHHHHHHHHHcCCCCeEEEeCCc-------hHHHHHHHH-HhhhccCCCCCCCCCCCcceEEEEecCCCCc
Q 007733 168 --ASSLWHIAKAIHKLEFTFGLIPNVRAKGKA-------SVRVAEILN-RMQTEEPVSLSDMNIPEINTLVLIDREVDMV 237 (591)
Q Consensus 168 --~~~l~~ia~~L~~l~~~~g~~P~I~~~g~~-------a~~va~~l~-~l~~~~~~~~~~~~~~~~~~LiIlDR~~D~~ 237 (591)
...+..+|.+++++|.++|.+|+|||.|.. |..||+.+. .+..+.. +....+...++.|||+||++|++
T Consensus 159 ~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~va~~l~~~~~~~~~-~~~~~p~~~~seLlIlDRs~D~i 237 (593)
T KOG1300|consen 159 IIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKVAAKLWDAYKAYKP-SIGNGPQKTRSELLILDRSFDPV 237 (593)
T ss_pred hhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHHHHHHHHHHHhccc-ccCCCCCcccceEEEEecccccc
Confidence 457889999999999999999999999853 234444444 2333331 21122235678999999999999
Q ss_pred ccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHh
Q 007733 238 TPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTE 317 (591)
Q Consensus 238 TPll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~ 317 (591)
+|+||+||||||+||+++|++|.|.++....++ +.++++.|+++|++|-++||+||++|.+.|++.+++|.+..+.
T Consensus 238 aPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g----~~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~ 313 (593)
T KOG1300|consen 238 APLLHEFTYQAMAYDLLPIENDVYRYETPGKSG----EKKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKR 313 (593)
T ss_pred chHHHHHHHHHHHHHHHhhcCCEEEEecCCCCC----CccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999996543221 2468899999999999999999999999999999999988743
Q ss_pred hccc--cccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcc-----hHHHHHHHH
Q 007733 318 VTTM--SQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEEM 386 (591)
Q Consensus 318 ~~~~--~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~l 386 (591)
.... ..+++|++++|++||+|++ ++.|++||++|++.++. .+++++.+||+++.|.|.. ..+..+.+.
T Consensus 314 ~~~~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~ 392 (593)
T KOG1300|consen 314 LQTKSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPI 392 (593)
T ss_pred hhccccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhh
Confidence 3222 1589999999999999987 99999999999999997 8999999999999996643 234444444
Q ss_pred Hh-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhch--hHHHHHHHHHhcCCcccccCCcChHHHHhhcCccc
Q 007733 387 IH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGF--EHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVE 463 (591)
Q Consensus 387 i~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~--~~~~~l~~l~~~gl~~~~~~~~~~~~~~k~l~l~~ 463 (591)
+. ...+..||+|++++|.+..+|+...++.+| +++-|+ +++..+.|+...|.-...+.+ . .+.... +
T Consensus 393 l~~~~~~~~dklR~Illy~~~~~Gi~ee~l~kL----~~~~~i~~~~~~ii~~~~~~~~~~~~~~~---~-~k~~~~--~ 462 (593)
T KOG1300|consen 393 LLESNVRLLDKLRLILLYIFERKGIIEENLAKL----LQHAGISVEEMQIIQNLHILGVPVTKDSF---L-LKFDPP--E 462 (593)
T ss_pred hcccCchHHHHHHHHHHHHHhcCCccHHHHHHH----hcccCCCchHHHHHhhHHHhCCccccCcc---c-ccCCCC--c
Confidence 43 567889999999999999999988888776 455554 568899999998876443321 1 000000 0
Q ss_pred ccCCCCCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCCC--CCCCCCC---CCCCc
Q 007733 464 DTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDM--SQGLSSS---IDKRS 538 (591)
Q Consensus 464 ~~~~~~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~--~~~~~~~---~~~~~ 538 (591)
....+.+..|..|||+|.++.++|+++++.++. +.++.+.++. .......+.|++. |...+.. ...++
T Consensus 463 --rker~~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~--~~fp~~~~~s---~~~~~~~~~Sar~~~~~~~k~~~~~~~~g~ 535 (593)
T KOG1300|consen 463 --RKERVEEQTYQLSRWVPVIKNILEKLIEDRLDK--KHFPYLNDTS---ETSSGSAATSARYGHPLSNKTPSAFKKPGQ 535 (593)
T ss_pred --cccccccceeeeeeeehHHHHHHHHHHhccCCh--hhCccccCCc---cccccCccccccccCcccccCcchhhccCc
Confidence 112335778999999999999999999987764 2233333332 0111112333333 1111111 12389
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhh
Q 007733 539 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFS 587 (591)
Q Consensus 539 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~ 587 (591)
++||||+||+||+|+|++|++++++ +++|+||||+|++|.+|+..|.
T Consensus 536 ri~VfIiGGvT~SEmRvaYevs~~~--~~EViiGS~~iltP~~fL~~lk 582 (593)
T KOG1300|consen 536 RIIVFIIGGVTFSEMRVAYEVSEKL--NREVIIGSDHILTPTKFLDDLK 582 (593)
T ss_pred eEEEEEeCCccHHHHHHHHHHHHhh--CceEEECCcccCCHHHHHHHHh
Confidence 9999999999999999999999997 7999999999999999999986
No 4
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-82 Score=631.56 Aligned_cols=522 Identities=21% Similarity=0.339 Sum_probs=441.1
Q ss_pred HHHHHHHHHHHHhhcC-CCceEEEEcCCCccccccccCchhHHhcCce-eEEcc---CCCCCCCCceEEEEECCChHHHH
Q 007733 17 IREQSQRDLVNILKNI-RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS---AEPVQTDCAKVVYFVGPQFISMR 91 (591)
Q Consensus 17 l~~~~~~~l~~~l~~~-~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~---~~~~~~~~~~~Iy~i~pt~~~i~ 91 (591)
+....+.++-.|+... ||.|||++|+.|.+++|.|++.|+++++.|- ++.|+ |+.+. +..||+|||||+++++
T Consensus 3 lv~~~k~yi~~m~~~~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~k--hLkcvvfiRPT~eniq 80 (549)
T KOG1299|consen 3 LVSSSKKYIEKMIQESGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIK--HLKCVVFIRPTPENIQ 80 (549)
T ss_pred hHHHHHHHHHHHHHhcCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhh--CceEEEEeccChHHHH
Confidence 3447788888998776 6999999999999999999999999999987 66665 45554 6899999999999999
Q ss_pred HHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccccCCCch
Q 007733 92 FISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASS 170 (591)
Q Consensus 92 ~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~~~d~~~ 170 (591)
.+++++++| .|..|||||++.++....+.|++++....|+ |.|+++||+++++++|||+.|++|... ..+++..
T Consensus 81 ~L~~ELrnP----ry~~Y~lyFsN~i~ks~le~LAesD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~-~~w~~~~ 155 (549)
T KOG1299|consen 81 LLIEELRNP----RYGEYHLYFSNIISKSDLERLAESDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESS-LNWDPGA 155 (549)
T ss_pred HHHHHhcCC----cceeEEEEEeccCCHHHHHHHHhcchHHHHHHHHHHHHhhhccCCceeecCCchhhccc-cccChhh
Confidence 999999987 9999999999999999999999999999998 999999999999999999999999886 5788899
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeC--CchHHHHHHHH-HhhhccCCCCCCCCC-CCcceEEEEecCCCCcccccchhhh
Q 007733 171 LWHIAKAIHKLEFTFGLIPNVRAKG--KASVRVAEILN-RMQTEEPVSLSDMNI-PEINTLVLIDREVDMVTPMCSQLTY 246 (591)
Q Consensus 171 l~~ia~~L~~l~~~~g~~P~I~~~g--~~a~~va~~l~-~l~~~~~~~~~~~~~-~~~~~LiIlDR~~D~~TPll~~~TY 246 (591)
+.++.+||.+++..++..|.|||++ ..|+++|+.+. .+..+. ..++.+. ...++|+|+||+.||+||||+||||
T Consensus 156 l~R~~~GI~AllLsLK~~P~IRYq~~S~~~~~lAe~vs~~i~~E~--~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qWTY 233 (549)
T KOG1299|consen 156 LTRSTQGIIALLLSLKKKPVIRYQTSSRACKRLAEEVSYRITKES--TLFDFRRTDSPPLLLILDRRDDPVTPLLNQWTY 233 (549)
T ss_pred hhHhHhhHHHHHHhccCCCeeEeecCCHHHHHHHHHHHHHHhhhh--hhcccccCCCCCeEEEEecCCCCCchhhhHHHH
Confidence 9999999999999999999999997 47899999998 555533 2333322 2457999999999999999999999
Q ss_pred hHHhhhhhcccCCeEEeCccccccccCCCCceEeecCC-CchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccccccH
Q 007733 247 EGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNS-SDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTV 325 (591)
Q Consensus 247 qall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~-~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (591)
|||+||++||++|+|.+.....- +..-++++|++ +|+||+..++.+|+|+++.|+..++++|.+.+..++. +++
T Consensus 234 QaMvHEl~gi~nnrvdls~~~~~----~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~~~~~i-esi 308 (549)
T KOG1299|consen 234 QAMVHELLGIKNNRVDLSKVPSI----PKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTKTNSNI-ESI 308 (549)
T ss_pred HHHHHHHhccccCEEeeccCCCC----ccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhchhh-hhH
Confidence 99999999999999999754311 12346788987 6999999999999999999999999999987777777 899
Q ss_pred HHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcchHHHHHHHHHh-cCCChHHHHHHH
Q 007733 326 SELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIH-KQEPLNKVLRLL 400 (591)
Q Consensus 326 ~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~li~-~~~~~~d~lRLl 400 (591)
.+|+.|+..+|++++ +++|+.+..++++.++.+++.+++|+||+++++.+...+++.|.+++. .+.+..|++||+
T Consensus 309 ~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~n~~vs~~d~lrLv 388 (549)
T KOG1299|consen 309 ADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQNEKVSEIDRLRLV 388 (549)
T ss_pred HHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHcCCcccHHHHHHHH
Confidence 999999999999998 999999999999999999999999999999998888889999999998 569999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhchh---HHHHHHHHHhcCCcccccCC----cChHHHHhhcCcccccCCCCCCCc
Q 007733 401 ILFSVTNSGLPKKQFDYLRRELLHSYGFE---HMATLNNLEKAGLFKKQETK----SNWQLVKRALQLVEDTDTANPNDI 473 (591)
Q Consensus 401 ~L~~l~~~g~~~~~~~~l~~~~~~~~g~~---~~~~l~~l~~~gl~~~~~~~----~~~~~~~k~l~l~~~~~~~~~~~~ 473 (591)
|||+|.++..++.++..+-+.+.+. |.. -+.++ ++.+|+..++++- ...+-.|+..+.+ ++.
T Consensus 389 ~lYaLr~e~~~~~~~~~L~~~l~~~-~~~~~~~v~~l--l~~~G~~~R~~dlf~~~~~v~i~R~~~kgl--------kgv 457 (549)
T KOG1299|consen 389 ALYALRYERHPPNELRQLPQILREQ-GPKKPELVPFL--LKYAGLHVRQGDLFGPNDLVPIARRFIKGL--------KGV 457 (549)
T ss_pred HHHHHHhccCChHHHHHHHHHHHhc-CCCcchhHHHH--HHhcCcccccccccCcchhHHHHHHHhhcc--------Ccc
Confidence 9999999999998888887655443 332 23333 5667887665431 1233333333333 356
Q ss_pred cccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEcCcCHHHH
Q 007733 474 SYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKRSLVLVVFVGGVTFAEI 553 (591)
Q Consensus 474 ~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~viVfviGGvTy~Ei 553 (591)
.++|.+|.|+++++++++..|.+.... +++- +...+..+++.||||||||+||+|.
T Consensus 458 ENVytQH~P~lk~~l~~~~rgRl~~~~----------~p~l--------------~~~~s~~~pq~IIVfivGGaTYEEa 513 (549)
T KOG1299|consen 458 ENVYTQHQPLLKSTLEDLFRGRLKEID----------YPFL--------------GSQTSRDRPQDIIVFIVGGATYEEA 513 (549)
T ss_pred hhhhhccCHHHHHHHHHHHhcccccCC----------Cccc--------------ccccccCCCceEEEEEECCccHHHH
Confidence 689999999999999999998766421 1110 1112224589999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhh
Q 007733 554 SALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 588 (591)
Q Consensus 554 ~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~ 588 (591)
+.++++... ++|.+++.|+|.|+|...|++++..
T Consensus 514 ~~V~~~N~t-n~g~rvvLgGttvlntk~f~~di~~ 547 (549)
T KOG1299|consen 514 RVVHELNAT-NPGVRVVLGGTTVLNTKSFIDEIMA 547 (549)
T ss_pred HHHHHHhcC-CCceEEEEcceEEechHHHHHHHhc
Confidence 999999977 5799999999999999999999864
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.7e-81 Score=657.13 Aligned_cols=551 Identities=23% Similarity=0.356 Sum_probs=440.5
Q ss_pred HHHHHHHHHHHHHhhcCCC---ceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChHH
Q 007733 16 SIREQSQRDLVNILKNIRG---KKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFIS 89 (591)
Q Consensus 16 ~l~~~~~~~l~~~l~~~~g---~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~~ 89 (591)
.+++.++.++.+.+..+.+ ||||++|+.+..+||+++.+++|+++||+ ++.++ |+|.+ +.+|||||+||.++
T Consensus 3 dl~e~q~~~i~~~i~~v~~~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~--~~~aiy~v~pt~e~ 80 (582)
T COG5158 3 DLLELQKNKILDEIFLVQPANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPIS--DLPAIYFVRPTKEN 80 (582)
T ss_pred cHHHHHHHHHHHHHHhcCCCcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCC--CCCEEEEEcCchHH
Confidence 4889999999999988854 99999999999999999999999999999 78886 56665 37899999999999
Q ss_pred HHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccccCCC
Q 007733 90 MRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDA 168 (591)
Q Consensus 90 i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~~~d~ 168 (591)
++.|++|+++. .+.|..||+.|+|..+....+.+++.|+...|+ |.++++||+++|+++|+++.|..|-..+.++..
T Consensus 81 i~~i~~D~~~~--~~~Y~~~~~~f~~~~~~~l~e~l~es~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~~~ 158 (582)
T COG5158 81 IDLILEDLEQW--DPFYLNYHISFLNTVTESLLELLAESGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPSTT 158 (582)
T ss_pred HHHHHHHHhcc--CccccceeEEecccchHHHHHHHhhcCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCCch
Confidence 99999999983 248999999999999999999999999999887 999999999999999999999999988876665
Q ss_pred chHHHHHHHHHHHHHHcCCCCeEEEeC-CchHHHHHHHH-HhhhccCCCC--CCCCCCCcceEEEEecCCCCcccccchh
Q 007733 169 SSLWHIAKAIHKLEFTFGLIPNVRAKG-KASVRVAEILN-RMQTEEPVSL--SDMNIPEINTLVLIDREVDMVTPMCSQL 244 (591)
Q Consensus 169 ~~l~~ia~~L~~l~~~~g~~P~I~~~g-~~a~~va~~l~-~l~~~~~~~~--~~~~~~~~~~LiIlDR~~D~~TPll~~~ 244 (591)
..+..++.+|+++|.++|.+|.|||.| +.|..+|+++. +++.+...+. .-...+.+++|||+||+.|++|||+|+|
T Consensus 159 ~~~~~~v~gl~S~~~slg~~P~Ir~~~~~~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~~~LIIlDRs~D~iTPlLh~w 238 (582)
T COG5158 159 EALIKIVNGLFSLCVSLGRIPIIRYSGGKNAEHMAKKLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITPLLHQW 238 (582)
T ss_pred HHHHHHHhhHHHHHhhcCCcceEEecCCchHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCcccchHHHH
Confidence 566689999999999999999999976 78999999998 5664432211 1112346899999999999999999999
Q ss_pred hhhHHhhhhhcccCCeEEeCccccccccCCCCc-eEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccc-c
Q 007733 245 TYEGLVDEFLRINNGSVELDASIMGAQQQDGKK-MKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTM-S 322 (591)
Q Consensus 245 TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~-~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~-~ 322 (591)
|||||+||++++++|.|+++.... +|.. +...++.+|++|.++||+||++|++.|++.+++++.+++.+... .
T Consensus 239 TYqaml~Dl~~~~~~~v~~~~~~~-----~g~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~~~~~~~~~~~~ 313 (582)
T COG5158 239 TYQAMLHDLLGINNNIVTIPSSSV-----NGPEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKKLAKELKTKAQLRHKENA 313 (582)
T ss_pred HHHHHHHHHHHhhcCeEEeccccc-----ccccceeccCCcccHhHHHhccCchhhHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 999999999999999999975432 2333 44444558999999999999999999999999999999887633 2
Q ss_pred ccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcchHHHHHHHHHhcCCChHHHHH
Q 007733 323 QTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLR 398 (591)
Q Consensus 323 ~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~li~~~~~~~d~lR 398 (591)
.++++|++||.+||++++ +++|++|+++|++.++++.|.+++++||++.++.+.+..+..+...+..+....+|||
T Consensus 314 ~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~~~~i~Dli~~l~~~~~E~~klR 393 (582)
T COG5158 314 KSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGNDVKSDISDLIELLESGVEEDDKLR 393 (582)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhcCchHHHHHH
Confidence 699999999999999987 9999999999999999999999999999999987654344444444444444446999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhchhHHHHHHHHHhcCCcccccCC------cChHHHHhhcCccc-ccCCCCCC
Q 007733 399 LLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETK------SNWQLVKRALQLVE-DTDTANPN 471 (591)
Q Consensus 399 Ll~L~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~l~~l~~~gl~~~~~~~------~~~~~~~k~l~l~~-~~~~~~~~ 471 (591)
|+|||+++.+|+ .++.+.++....+.+|++++..+.+|..+|.+..++.. +.-..+-++.+.+. ........
T Consensus 394 llilysL~~~~~-~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~~n~y~~s~~~~~~~ 472 (582)
T COG5158 394 LLILYSLTKDGL-IKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQWFNTYSLSREHQGVP 472 (582)
T ss_pred HHHHHHHhcCcc-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCcccccccccccCCCc
Confidence 999999999997 66777777777788999999999999998887433211 00011222233331 11113556
Q ss_pred CccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEcCcCHH
Q 007733 472 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKRSLVLVVFVGGVTFA 551 (591)
Q Consensus 472 ~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~viVfviGGvTy~ 551 (591)
+..++|.||.|..+++...++.+.... +.+...+.+.....+. ++........+++++|||+||+||.
T Consensus 473 ~~~~v~~~~iP~~k~~~~~~~~~~~~~----------~~~s~~~~s~~~~~~k--~~~~~~~~~~~~~~~VfviGG~ty~ 540 (582)
T COG5158 473 DLENVYSGLIPLKKDIPIDLLVRRLFE----------PLKSSQQQSLRLSRPK--GRSRSNKKIPQQRILVFVIGGVTYE 540 (582)
T ss_pred hHHHHHHhhcchhcccchhhhhhhhcc----------cccchhccceeecccc--cccccccccccceEEEEEECCeehH
Confidence 788999999999999999988754221 0010001000000000 0000011234899999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhhh
Q 007733 552 EISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 589 (591)
Q Consensus 552 Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~~ 589 (591)
|++++++++...+ +++|++|||.|+||.+||+++...
T Consensus 541 E~~~~~e~~~~~~-~~~ii~Gst~iltp~e~l~~v~~~ 577 (582)
T COG5158 541 ELRVLYELNESQN-SVRIIYGSTEILTPAEFLDEVKRL 577 (582)
T ss_pred HHHHHHHHHhhcC-CeeEEEcCCceecHHHHHHHHHHh
Confidence 9999999999862 399999999999999999998764
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-76 Score=591.11 Aligned_cols=545 Identities=21% Similarity=0.301 Sum_probs=409.6
Q ss_pred ChHHHHHHHHHHHHHHhh----------c-CCCceEEEEcCCCccccccccCchhHHhcCcee-EEc--cCCCCCCCCce
Q 007733 13 NLKSIREQSQRDLVNILK----------N-IRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIEL-RLL--SAEPVQTDCAK 78 (591)
Q Consensus 13 ~l~~l~~~~~~~l~~~l~----------~-~~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~i-~~l--~~~~~~~~~~~ 78 (591)
.+.+||+.+-..+..||. . -|-|||||+|..+..+||+++++++|+++||++ ..+ +|+|++. .+
T Consensus 8 ~~~slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~D--VP 85 (621)
T KOG1301|consen 8 AAASLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPD--VP 85 (621)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCC--CC
Confidence 467899999999999984 1 256999999999999999999999999999995 455 3889975 47
Q ss_pred EEEEECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHc----CcCceee-EEEEcccceecCCCeEEe
Q 007733 79 VVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEE----KVHNLMT-IGEYPLYMVPLDEDVLSF 153 (591)
Q Consensus 79 ~Iy~i~pt~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~----~~~~~i~-v~e~~~df~pld~~lfsl 153 (591)
|||||.||.||+++|++|+++. +|.+||++|++.++....+-|++. |....|. |++.+++|+.+++|+|+|
T Consensus 86 AVYFV~Pt~eNid~i~~Dl~~~----lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL 161 (621)
T KOG1301|consen 86 AVYFVSPTEENIDRIIQDLSKG----LYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSL 161 (621)
T ss_pred eEEEeCCchHhHHHHHHHHHHh----hhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhh
Confidence 9999999999999999999986 999999999987776666666543 5666776 999999999999999999
Q ss_pred ecccccccccccCC-----CchHHHHHHHHHHHHHHcCCCCeEEE-eCCchHHHHHHHH-HhhhccC---CCCCCCC---
Q 007733 154 ELDLAHKEWQVDGD-----ASSLWHIAKAIHKLEFTFGLIPNVRA-KGKASVRVAEILN-RMQTEEP---VSLSDMN--- 220 (591)
Q Consensus 154 ~~~~~~~~~~~~~d-----~~~l~~ia~~L~~l~~~~g~~P~I~~-~g~~a~~va~~l~-~l~~~~~---~~~~~~~--- 220 (591)
.++++|..+..++. ...+.++|.+|++++.++|.+|.||| +|+.|++||++|. +++.+.- .+.+...
T Consensus 162 ~~~~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~aAEmvA~kL~qKLRd~l~d~k~~lft~~~~~ 241 (621)
T KOG1301|consen 162 GMQNSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGGAAEMVARKLDQKLRDNLRDTKNNLFTMDGGG 241 (621)
T ss_pred cccccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCCHHHHHHHHHHHHHHHHhHhhcccceeccCcc
Confidence 99999966543332 24578899999999999999999999 6899999999998 7776543 1222211
Q ss_pred -CCCcceEEEEecCCCCcccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHH
Q 007733 221 -IPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEV 299 (591)
Q Consensus 221 -~~~~~~LiIlDR~~D~~TPll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~ 299 (591)
..+++.|+|+||++|++||+.|.||||||+||+|+++.|+|+++.+. +.+.++.++|+++|.||+++++..|++
T Consensus 242 ~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~-----~~~~~k~yDld~~D~fW~~n~~~pFP~ 316 (621)
T KOG1301|consen 242 AGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES-----KRKKKKSYDLDPNDKFWRRNKGSPFPE 316 (621)
T ss_pred cCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc-----cCCCCccccCCCccHHHHhcCCCCCch
Confidence 24899999999999999999999999999999999999999998653 134678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-------------cccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhc
Q 007733 300 VVQVLRQKATSMKQDYTEVTTM-------------SQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLG 362 (591)
Q Consensus 300 v~~~l~~~~~~~~~~~~~~~~~-------------~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~ 362 (591)
|++.+.+++.+++++..+.++. ..+...+++.|++||++.+ +++|++||.++++.+++|+++.
T Consensus 317 VAE~Ve~eL~~Yk~~~~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~IkeR~lD~ 396 (621)
T KOG1301|consen 317 VAENVEEELESYKNEEAEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIKERKLDD 396 (621)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999998876622 1244499999999999975 9999999999999999999999
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHh-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhch--hHHHHHHHHHh
Q 007733 363 QLDMEHTIIEAQSYDICFEYIEEMIH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGF--EHMATLNNLEK 439 (591)
Q Consensus 363 ~~~lEq~i~~~~~~~~~~~~i~~li~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~--~~~~~l~~l~~ 439 (591)
++++|+++.++.-.+.. +.-+.+ ...+++||||++++|.++.+.+++.++++++..+ +..|. ..+.++.+++.
T Consensus 397 ff~~E~~~~~~~l~~~~---l~~~~~~~~gt~EDkLR~~Ii~~ls~et~~~s~le~~e~al-~e~~~d~~Al~yvkr~k~ 472 (621)
T KOG1301|consen 397 FFEVEKKIMSTTLDRSL---LDILEDGEAGTPEDKLRLFIIYYLSTETVPQSDLEAVENAL-TEAGCDLNALKYVKRLKE 472 (621)
T ss_pred HHHHhcccccccccHHH---HHHHhcccCCChHHHHHHHHHHHHhhccccHHHHHHHHHHH-HhcCCchHHHHHHHHHHH
Confidence 99999999873222222 333333 4588999999999999999999999999987754 33333 34555544433
Q ss_pred cCCccccc------CCcChHHHHhhcCcc-cccCCCCCCCccc-cccCccccHHHHHHHHHHcCC-CchHHHhhcCCCCc
Q 007733 440 AGLFKKQE------TKSNWQLVKRALQLV-EDTDTANPNDISY-VFSGYAPLSIRLVQNAIRSGW-RPMEEILKLLPGPH 510 (591)
Q Consensus 440 ~gl~~~~~------~~~~~~~~~k~l~l~-~~~~~~~~~~~~~-~~s~y~Pl~~rive~~~~~~~-~~~~~~~~~l~~~~ 510 (591)
..-..+.. .++....+.+.+..- ..+ -..+.+ +..+..-.+.++||.+..+.- +++++|+= +. +.
T Consensus 473 ~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~v----m~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~-~D-Pk 546 (621)
T KOG1301|consen 473 ITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFV----MEGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLY-FD-PK 546 (621)
T ss_pred HhhcccccccccCCcccHHHHHHHHhhccHHHH----HhhHHhcCcccccCcHHHHHHHhhCCCCCccccceEe-ec-cc
Confidence 32221110 011111222211111 000 000001 111122235677777776532 22333221 10 00
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhhh
Q 007733 511 YETKRGGFSSSPSFDMSQGLSSSIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 589 (591)
Q Consensus 511 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~~ 589 (591)
..+.+ + +.........++.|||+|||++|-|+..|.+++++-...++||+|||+|+||.+|++++...
T Consensus 547 --~~k~~-----~----~~~~~~r~~f~eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~L 614 (621)
T KOG1301|consen 547 --LSKGG-----S----SSLPIKRQPFQEAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRL 614 (621)
T ss_pred --cccCC-----C----ccccccccchhheEEEEEcCcCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHh
Confidence 00000 0 00001112489999999999999999999999988544589999999999999999999843
No 7
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=43.25 E-value=64 Score=26.64 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=28.2
Q ss_pred CCcEEEEEEEcC--cCHHHHHHHH-HHHHhcCCCceEEEEec
Q 007733 536 KRSLVLVVFVGG--VTFAEISALR-FLSAQEGMAYDVIVGTT 574 (591)
Q Consensus 536 ~~~~viVfviGG--vTy~Ei~~l~-~l~~~~~~~~~iiigsT 574 (591)
+-+.++|-|.|| +|+.|+..+- .+.+......+|++|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 368999999997 7899998775 45555555789999876
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=40.06 E-value=41 Score=32.64 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=29.9
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHh
Q 007733 539 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 585 (591)
Q Consensus 539 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~ 585 (591)
.+.|.+.||+|-..+..+.+ . |.++++.+|.|.+.+++-+.
T Consensus 167 ~~~I~vdGGI~~eni~~l~~---a---GAd~vVvGSaIf~~~d~~~~ 207 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE---A---GADMFVAGSAIFGQPDYKAV 207 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH---c---CCCEEEEeHHHhCCCCHHHH
Confidence 47788899999666655443 3 88999999999876554333
No 9
>PLN02334 ribulose-phosphate 3-epimerase
Probab=38.51 E-value=37 Score=33.06 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=30.1
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHh
Q 007733 540 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 585 (591)
Q Consensus 540 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~ 585 (591)
+-|+++||+|-.-++.+... |.++++.++.|.+.++.-+.
T Consensus 175 ~~I~a~GGI~~e~i~~l~~a------Gad~vvvgsai~~~~d~~~~ 214 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAEA------GANVIVAGSAVFGAPDYAEV 214 (229)
T ss_pred CcEEEeCCCCHHHHHHHHHc------CCCEEEEChHHhCCCCHHHH
Confidence 35899999998877666553 78888888999977664433
No 10
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=35.85 E-value=50 Score=31.65 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=30.4
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHh
Q 007733 540 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 585 (591)
Q Consensus 540 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~ 585 (591)
+.|.+.||+|-..++.+.. . |.+.++.++.|++.++.-+.
T Consensus 171 ~~i~v~GGI~~~nv~~l~~---~---GaD~vvvgSai~~~~d~~~~ 210 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE---A---GADVFVAGSAVFGAPDYKEA 210 (220)
T ss_pred ceEEEECCCCHHHHHHHHH---c---CCCEEEEChhhhCCCCHHHH
Confidence 5677889999976666554 2 78999999999987665443
No 11
>PF14071 YlbD_coat: Putative coat protein
Probab=35.08 E-value=26 Score=30.46 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=12.4
Q ss_pred eecCCCchhHHHhh
Q 007733 280 VPLNSSDKLFKEIR 293 (591)
Q Consensus 280 ~~L~~~D~~~~~~r 293 (591)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 56788999999999
No 12
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=32.08 E-value=63 Score=29.96 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=29.5
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhh
Q 007733 539 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETF 586 (591)
Q Consensus 539 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l 586 (591)
.+-|++.||++-..+..+.. . |.+.+..++.+....+..+.+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~---~---Ga~~i~~g~~i~~~~~~~~~~ 191 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA---A---GADGVAVISAITGADDPAAAA 191 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH---c---CCCEEEEehHhhcCCCHHHHH
Confidence 35689999999766554444 2 788888888888765555444
No 13
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=28.22 E-value=73 Score=30.23 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=27.4
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhH
Q 007733 540 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSL 582 (591)
Q Consensus 540 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~f 582 (591)
+-|+..||+|-..++.+.. . |.+.+++++.|.+..+.
T Consensus 161 ~~v~a~GGI~~~~i~~~~~---~---Ga~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE---A---GADGVAVVSAITGAEDP 197 (212)
T ss_pred CCEEEECCcCHHHHHHHHH---c---CCCEEEEeHHhhcCCCH
Confidence 7789999999766554443 2 78888888999876544
No 14
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=27.08 E-value=3e+02 Score=26.93 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=36.6
Q ss_pred eEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhcCCc
Q 007733 278 MKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSL 338 (591)
Q Consensus 278 ~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~ 338 (591)
.++..++.|++|.+.++ .+.+.-..|++..+....-.++++++..++.++...+..|...
T Consensus 13 ~~~k~~E~D~~F~~~k~-yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~ 72 (234)
T cd07664 13 MTIKMNESDAWFEEKQQ-QFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNS 72 (234)
T ss_pred ccccccCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567778999999876 4555555555554444444444555544666777666666443
No 15
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.67 E-value=3.8e+02 Score=26.28 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=35.4
Q ss_pred eEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhcCC
Q 007733 278 MKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNS 337 (591)
Q Consensus 278 ~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~ 337 (591)
.++..++.|++|.+-++ .+.++-..|++..+.+..-.++++.+..++.++...+..|..
T Consensus 13 ~~~k~~E~D~wF~~k~~-~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~ 71 (234)
T cd07665 13 MTIKMNESDVWFEEKLQ-EVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGS 71 (234)
T ss_pred cccCcCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566778999998765 555555555555554444444555554456666666665533
No 16
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=22.20 E-value=1.2e+02 Score=28.72 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=30.0
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhh
Q 007733 540 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFS 587 (591)
Q Consensus 540 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~ 587 (591)
+-|++.||+|-.- ++++.+. +.+.++.++.|+++.+.-+.+.
T Consensus 166 ~~i~v~GGI~~en---v~~l~~~---gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 166 ILIEVDGGVNDDN---ARELAEA---GADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred ceEEEECCcCHHH---HHHHHHc---CCCEEEEChHHhCCCCHHHHHH
Confidence 4578999999644 4444433 7889999999998777555443
No 17
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.55 E-value=1.5e+02 Score=27.94 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=26.1
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchh
Q 007733 540 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNS 581 (591)
Q Consensus 540 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~ 581 (591)
+.|.+.||+|..-+..+. +. |.+.++.++.|.+.++
T Consensus 159 ~~i~v~GGI~~~n~~~~~---~~---Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 159 ARVAVAGGINLDTIPDVI---KL---GPDIVIVGGAITKAAD 194 (206)
T ss_pred CcEEEECCcCHHHHHHHH---Hc---CCCEEEEeehhcCCCC
Confidence 456778999987766443 33 7888888888987544
No 18
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.55 E-value=1.1e+02 Score=26.57 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=39.0
Q ss_pred CchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC
Q 007733 285 SDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTS 356 (591)
Q Consensus 285 ~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~l~~H~~l~~~i~~~~~ 356 (591)
++.||.++-.+-=.+=.+.|+..++=+.+..+ .....-...|+.+||+..|.-+.+-...+.=+.+++.+.
T Consensus 26 se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d-~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~ 96 (119)
T PF11698_consen 26 SEKFWRENADKFEENNFELLKKLIKLLDKSDD-PTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN 96 (119)
T ss_dssp -HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHH-HHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHcccHHHHHHHHHHccCCC-cceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc
Confidence 58999998765433333334433333322221 111113567899999999887765555555566666555
No 19
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=20.26 E-value=1.2e+02 Score=29.56 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=30.4
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHh
Q 007733 539 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 585 (591)
Q Consensus 539 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~ 585 (591)
.+.|-|-||+|-..+..+.. . |.+++|.++.|...++.-+.
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~---a---Gad~iVvGsaI~~a~d~~~~ 213 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD---A---GANVIVAGSSIFKAKDRKQA 213 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH---c---CCCEEEEchHHhCCCCHHHH
Confidence 36688899999987765554 2 78999999999876554433
No 20
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.15 E-value=1.2e+02 Score=28.71 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=29.7
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhh
Q 007733 540 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFS 587 (591)
Q Consensus 540 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~ 587 (591)
+-|++.||+|-.-++ ++.+. +.+.++.++.+++..+.-..+.
T Consensus 167 ~pi~v~GGI~~env~---~~~~~---gad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 167 LLIEVDGGINLETIP---LLAEA---GADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred eEEEEECCCCHHHHH---HHHHc---CCCEEEECHHHhCCCCHHHHHH
Confidence 457899999974444 44333 7888899999998777655443
Done!