Query 007733
Match_columns 591
No_of_seqs 155 out of 1027
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:08:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_A UNC18; exocytosis, exoc 100.0 8.8E-96 3E-100 817.6 48.4 543 16-589 3-615 (650)
2 1epu_A S-SEC1; parallel beta-s 100.0 1.2E-95 4E-100 811.4 39.7 550 16-589 2-588 (591)
3 3puk_A Syntaxin-binding protei 100.0 5.8E-96 2E-100 806.5 31.9 538 15-588 8-579 (592)
4 1dn1_A NSEC1, syntaxin binding 100.0 1.6E-94 5.5E-99 795.4 42.9 546 16-588 5-584 (594)
5 3c98_A Syntaxin-binding protei 100.0 8.8E-94 3E-98 798.2 41.9 553 12-589 13-597 (606)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 3.3E-89 1.1E-93 766.4 37.9 538 15-588 17-660 (671)
7 1y9j_A SEC1 family domain cont 99.9 3.6E-24 1.2E-28 192.6 9.9 122 15-142 20-159 (159)
8 1tqx_A D-ribulose-5-phosphate 19.8 76 0.0026 29.5 3.7 37 539-581 173-209 (227)
9 1y0e_A Putative N-acetylmannos 18.8 80 0.0027 28.8 3.7 45 539-589 175-220 (223)
10 3cu2_A Ribulose-5-phosphate 3- 14.9 1.2E+02 0.0041 28.3 3.8 37 539-579 187-223 (237)
No 1
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=8.8e-96 Score=817.63 Aligned_cols=543 Identities=17% Similarity=0.244 Sum_probs=445.2
Q ss_pred HHHHHHHHHHH-HHhhcC---CCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChH
Q 007733 16 SIREQSQRDLV-NILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFI 88 (591)
Q Consensus 16 ~l~~~~~~~l~-~~l~~~---~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~ 88 (591)
+||+.+|++|+ ++| ++ +|||+||+|+.++++||++|++++|+++||+ ++.|+ |+|+|. .+|||||+|+.+
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~--~~aIyfv~Pt~~ 79 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQ--FHGVYFIEPTEE 79 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTT--SEEEEEECSCHH
T ss_pred cHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCC--CCEEEEEcCCHH
Confidence 48999999999 999 88 7999999999999999999999999999999 89997 578864 789999999999
Q ss_pred HHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccc-cC
Q 007733 89 SMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQV-DG 166 (591)
Q Consensus 89 ~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~-~~ 166 (591)
|+++|++|+++.. ++|++|||||+|.++....+.|++.++.+.|. |.|+++||+|+|+|+|||++|++|..+|. ++
T Consensus 80 ni~~i~~d~~~~~--~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 80 NLDYVIRDFADRT--PTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHSSS--CSBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHhhcC--CCcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 9999999998731 49999999999999888888888889888885 99999999999999999999999999984 67
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCeEEEeCC---chHHHHHHHH-Hhhh-ccCCCCC-CCCCCCcceEEEEecCCCCcccc
Q 007733 167 DASSLWHIAKAIHKLEFTFGLIPNVRAKGK---ASVRVAEILN-RMQT-EEPVSLS-DMNIPEINTLVLIDREVDMVTPM 240 (591)
Q Consensus 167 d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~---~a~~va~~l~-~l~~-~~~~~~~-~~~~~~~~~LiIlDR~~D~~TPl 240 (591)
+.+.++.+|++|+++|.++|.+|.|||+|+ .|++||++++ ++.. ... ... ..+...+++|||+||++|++|||
T Consensus 158 ~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~-~~~~~~~~~~~~~LiIlDR~~D~vTPL 236 (650)
T 2xhe_A 158 SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQ-GLINAREGKLKSQFLILDRAVDLKSPL 236 (650)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTT-TSCCCCCCSSCCEEEEECGGGCSSTTT
T ss_pred chHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccC-CcccCCCCCCCCEEEEEcCCcchhhhc
Confidence 788999999999999999999999999986 5999999998 5654 111 111 11245688999999999999999
Q ss_pred cchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhc-
Q 007733 241 CSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVT- 319 (591)
Q Consensus 241 l~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~- 319 (591)
+||||||||+||+|||++|+|+++....++ +.+++++.||++|+||.++||+||++|++.|+++++++++++++.+
T Consensus 237 lhq~TYqaLi~dll~I~~n~v~~~~~~~~~---~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~ 313 (650)
T 2xhe_A 237 VHELTYQAAAYDLLNIENDIYSYSTVDAGG---REQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQG 313 (650)
T ss_dssp SCCCBHHHHHHHHSCCBTTEEEEEECCSSC---CSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccchHHHHHHHHhcCcCCEEEEEecCCCC---CccceEEeCCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999998643211 1245789999999999999999999999999999999999988765
Q ss_pred ------cccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCc-----chHHHHHH
Q 007733 320 ------TMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSY-----DICFEYIE 384 (591)
Q Consensus 320 ------~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~-----~~~~~~i~ 384 (591)
+. .++++|++||++||++++ +++|++||++|++.+++ +|++++++||++++|.|. +..++.|+
T Consensus 314 ~~~~~~~~-~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~ 391 (650)
T 2xhe_A 314 LRDSQQGE-GGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVA 391 (650)
T ss_dssp CCCCCCST-TTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHH
T ss_pred cccccccc-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 23 689999999999999986 99999999999999999 999999999999999875 45688999
Q ss_pred HHHh-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhch--hHHHHHHHHHhcCCcccccC--CcChHHHHhhc
Q 007733 385 EMIH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGF--EHMATLNNLEKAGLFKKQET--KSNWQLVKRAL 459 (591)
Q Consensus 385 ~li~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~--~~~~~l~~l~~~gl~~~~~~--~~~~~~~~k~l 459 (591)
++|. .+.+..|||||+|||+++++|+++++++. +++.||+ +++.++.||+++|+...+.. +..|..
T Consensus 392 ~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~~~~~~~----- 462 (650)
T 2xhe_A 392 SVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELNN----LLDNANIATPSRSAIYNLEMLGATVVADRRGRKPKTM----- 462 (650)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCGGGGHHHHGGGGGTCCCBGGGCCCCCCCC-----
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHcCCCHHHHHHHHHHHHhCCcccccccccccccc-----
Confidence 9887 77899999999999999999999988854 6889999 89999999999999865431 111211
Q ss_pred CcccccCCCCCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccc---------c-ccCCCCCCCCCC--CC
Q 007733 460 QLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYE---------T-KRGGFSSSPSFD--MS 527 (591)
Q Consensus 460 ~l~~~~~~~~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~---------~-~~~~~~~~~s~~--~~ 527 (591)
.. ...+.+|+|+||+|+++|+||.++++.++. +.+ ..+.++.-. . ......++.+.+ .|
T Consensus 463 ---~r----k~~~~~yv~s~y~Pl~~rlve~l~~~~l~~-~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w 533 (650)
T 2xhe_A 463 ---KR----IERDMPYVLSRWTPIVKDLMEYIATGQLDL-ESY-PAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNW 533 (650)
T ss_dssp ---CC----CCCCCCSTTCCCCCHHHHHHHHHTTTCSCT-TTS-CBSSCGGGSCCCC-----------------------
T ss_pred ---cc----cccCCcceeccchHHHHHHHHHHhcCCCCc-ccC-ceeCCCCccccccccccccccccccccccccccccc
Confidence 00 012338999999999999999999975332 111 111110000 0 000000000000 01
Q ss_pred CCCC------------------C----CCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHh
Q 007733 528 QGLS------------------S----SIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 585 (591)
Q Consensus 528 ~~~~------------------~----~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~ 585 (591)
.+.+ . ...+++++|||||||+||+|+|++|+++++. +++||||||+|+||++||++
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~--~~~viigsT~Iln~~~fl~~ 611 (650)
T 2xhe_A 534 AKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSS--GYEVYIGAHNIATPAEFVEL 611 (650)
T ss_dssp ----------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTS--SSEEEEEEEEECCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcC--CCEEEEeeCCcCCHHHHHHH
Confidence 1100 0 0123688999999999999999999999774 89999999999999999999
Q ss_pred hhhh
Q 007733 586 FSEN 589 (591)
Q Consensus 586 l~~~ 589 (591)
+...
T Consensus 612 l~~l 615 (650)
T 2xhe_A 612 VSLL 615 (650)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9754
No 2
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=1.2e-95 Score=811.43 Aligned_cols=550 Identities=16% Similarity=0.264 Sum_probs=437.7
Q ss_pred HHHHHHHHHHH-HHhhcC---CCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChH
Q 007733 16 SIREQSQRDLV-NILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFI 88 (591)
Q Consensus 16 ~l~~~~~~~l~-~~l~~~---~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~ 88 (591)
+|++.+|++++ ++++.+ +||||||+|+.++++||++|++++|+++||+ ++.|+ |+|+|. .+|||||+||.+
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~--~~aIy~v~Pt~~ 79 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPL--LEAVYLITPTEE 79 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEE--EEEEEEECCCHH
T ss_pred ChHHHHHHHHHHHHHHhhccCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCC--CCeEEEecCCHH
Confidence 48888998888 777655 7999999999999999999999999999999 89997 577764 789999999999
Q ss_pred HHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeeccccccccccc--
Q 007733 89 SMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVD-- 165 (591)
Q Consensus 89 ~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~~-- 165 (591)
|+++|++|+++. .++.|++|||+|+|.++..+.+.|++.++.+.|. |.|+++||+|+|+|+|||++|++|..+|.+
T Consensus 80 ni~~i~~d~~~~-~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~~ 158 (591)
T 1epu_A 80 SVKCLMADFQNP-DNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSR 158 (591)
T ss_dssp HHHHHHHHTSST-TSCSEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGG
T ss_pred HHHHHHHHHhhc-ccccCCeEEEEECCCCCHHHHHHHHhCchHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCcc
Confidence 999999999862 2359999999999999999999999999888885 999999999999999999999999999975
Q ss_pred --CCCchHHHHHHHHHHHHHHcCCCCeEEEeCC--chHHHHHHHH-HhhhccCC-CCCCC-CCCCcceEEEEecCCCCcc
Q 007733 166 --GDASSLWHIAKAIHKLEFTFGLIPNVRAKGK--ASVRVAEILN-RMQTEEPV-SLSDM-NIPEINTLVLIDREVDMVT 238 (591)
Q Consensus 166 --~d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~--~a~~va~~l~-~l~~~~~~-~~~~~-~~~~~~~LiIlDR~~D~~T 238 (591)
++.+.++.+|++|+++|.++|.+|.|||+|+ .|++||+.++ +++.+... ..+.. +...+++|||+||++|++|
T Consensus 159 ~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vT 238 (591)
T 1epu_A 159 AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPIS 238 (591)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSSG
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEECCCccchh
Confidence 6678999999999999999999999999986 6999999998 45543211 11111 1346789999999999999
Q ss_pred cccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhh
Q 007733 239 PMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEV 318 (591)
Q Consensus 239 Pll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~ 318 (591)
||+||||||||+||+|||++|+|+++....+ ..+++++.|+++|+||.++||+||++|++.|+++++++++++++.
T Consensus 239 PLlhq~TYqali~dll~I~~n~v~~~~~~~~----~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~ 314 (591)
T 1epu_A 239 PLLHELTFQAMAYDLLPIENDVYKYVNTGGN----EVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMG 314 (591)
T ss_dssp GGSCCCBHHHHHHHHSCCBTTEECC---------------CEECCGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhhhhhHHHHHHHHhCcCCCEEEEEecCCC----CccceEEeCCCCChHHHHHhccCHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999764211 124578999999999999999999999999999999999987655
Q ss_pred c--cccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcc-----hHHHHHHHHH
Q 007733 319 T--TMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEEMI 387 (591)
Q Consensus 319 ~--~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~li 387 (591)
+ +. .++++|++||++||++++ +++|++||++|++.+++ +|++++++||++++|.+.+ ..++.|.+++
T Consensus 315 ~~~~~-~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~i~~~l 392 (591)
T 1epu_A 315 TAADK-AGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPIL 392 (591)
T ss_dssp -------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHH
T ss_pred ccccc-cCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccchHHHHHHHHH
Confidence 4 33 689999999999999987 99999999999999999 9999999999999998753 5678888876
Q ss_pred h-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhch--hHHHHHHHHHhcCCcccccC--CcChHHHHhhcCcc
Q 007733 388 H-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGF--EHMATLNNLEKAGLFKKQET--KSNWQLVKRALQLV 462 (591)
Q Consensus 388 ~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~--~~~~~l~~l~~~gl~~~~~~--~~~~~~~~k~l~l~ 462 (591)
. .+.+.+|||||+|||+++++|++++++++ +++++|+ +++.++.||+++|+...++. +..|.. .+.
T Consensus 393 ~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~~~~~~-----~~~ 463 (591)
T 1epu_A 393 LDQKISAYDKIRIILLYIIHKGGISEENLAK----LVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQP-----YHT 463 (591)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCT-----TSG
T ss_pred hCCCCCHHHHHHHHHHHHHHcCCCCHHHHHH----HHHhcCCCHHHHHHHHHHHHcCCccccCCcccccccc-----ccc
Confidence 4 77899999999999999999999988764 6889999 78999999999998765432 122211 001
Q ss_pred cccCCCCCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCC--CCCCCCCC--CCCCc
Q 007733 463 EDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFD--MSQGLSSS--IDKRS 538 (591)
Q Consensus 463 ~~~~~~~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~--~~~~~~~~--~~~~~ 538 (591)
. .....+++.+|+|+||+|+++|+||.++++.++. +++ ..+.++..... ...+.+.+ .|.+.+.. ...++
T Consensus 464 ~-~~~~~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~-~~~-~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~ 537 (591)
T 1epu_A 464 H-NRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDT-RHY-PFLNGGGPRPS---CQQPVSVRYGHWHKDKGQASYKSGP 537 (591)
T ss_dssp G-GSCCCCSCCSCGGGCCCCHHHHHHHHHHTTCSCT-TTS-CBTTSCC----------------------------CCCC
T ss_pred c-ccccCCCCccccccccchhHHHHHHHHhcCCCCc-ccC-cccCCCCCccc---cCCccccccCcccCCCCccccCCCC
Confidence 0 1123567889999999999999999999975332 111 11211110000 00000111 12211111 12356
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhhh
Q 007733 539 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 589 (591)
Q Consensus 539 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~~ 589 (591)
++|||||||+||+|++++|+++++...+++|+||||+|+||++|+++|...
T Consensus 538 ~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~~~fl~~l~~l 588 (591)
T 1epu_A 538 RLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKI 588 (591)
T ss_dssp EEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHTT
T ss_pred eEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCHHHHHHHHHHh
Confidence 799999999999999999999984334899999999999999999998753
No 3
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=5.8e-96 Score=806.52 Aligned_cols=538 Identities=17% Similarity=0.250 Sum_probs=437.9
Q ss_pred HHHHHHHHHHHHH-HhhcC---CCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCCh
Q 007733 15 KSIREQSQRDLVN-ILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQF 87 (591)
Q Consensus 15 ~~l~~~~~~~l~~-~l~~~---~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~ 87 (591)
.+|+++++++|++ +|+++ ++|||||+|+.++++||++|++++|+++||+ ++.|+ |+|++. ++|||||+||.
T Consensus 8 ~~lk~~~~~~l~~~~l~~v~~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~--~~aIYfv~Pt~ 85 (592)
T 3puk_A 8 RGLKSVVWRKIKTAVFDDCRKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQ--MKALYFISPTP 85 (592)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTT--SCEEEEECSCH
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCC--CcEEEEEeCCH
Confidence 3599999999996 89988 6899999999999999999999999999999 89997 577764 78999999999
Q ss_pred HHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccccC
Q 007733 88 ISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDG 166 (591)
Q Consensus 88 ~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~~~ 166 (591)
+|+++|++|++++ ..+.|++|||||+|.++....+.| ++++.+.|+ |.|+++||+|+|+|+|||++|++|..+|.++
T Consensus 86 eni~~i~~dl~~~-~~~~Y~~~~i~F~~~~~~~lle~L-~~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~~ 163 (592)
T 3puk_A 86 KSVDCFLRDFGSK-SEKKYKAAYIYFTDFCPDSLFNKI-KASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPD 163 (592)
T ss_dssp HHHHHHHHHHTGG-GCCCBSCEEEEESSCCCHHHHHHH-HHSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCCS
T ss_pred HHHHHHHHHHhcc-ccccCCeEEEEECCCCCHHHHHHH-HhhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCCc
Confidence 9999999999864 346999999999999988777778 789999995 9999999999999999999999999999843
Q ss_pred ------CCchHHHHHHHHHHHHHHcCCCCeEEEeCC---chHHHHHHHH-HhhhccCCCCCCC-CCCCcceEEEEecCCC
Q 007733 167 ------DASSLWHIAKAIHKLEFTFGLIPNVRAKGK---ASVRVAEILN-RMQTEEPVSLSDM-NIPEINTLVLIDREVD 235 (591)
Q Consensus 167 ------d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~---~a~~va~~l~-~l~~~~~~~~~~~-~~~~~~~LiIlDR~~D 235 (591)
+.+.++.+|++|+++|.++|.+|.|||+|+ .|++||++++ ++..+...+.... ..+++++|||+||++|
T Consensus 164 ~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D 243 (592)
T 3puk_A 164 PSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFD 243 (592)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEEGGGC
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEecCCcc
Confidence 457889999999999999999999999986 3679999998 7776332221111 1256789999999999
Q ss_pred CcccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 007733 236 MVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDY 315 (591)
Q Consensus 236 ~~TPll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~ 315 (591)
++|||+||||||||+||+|||++|.|+++.. |+++++.|+++|++|.++||+||++|++.|.++++++++++
T Consensus 244 ~vtPLlh~~TYqalv~dll~i~~~~v~~~~~--------g~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~ 315 (592)
T 3puk_A 244 PVSTVLHELTFQAMAYDLLPIENDTYKYKTD--------GKEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISSTK 315 (592)
T ss_dssp SSTTTSCCCBHHHHHHHHSCCGGGEEECCSS--------SSCCEEECSTTSSSTTTTTTSBHHHHHTTSCSCSTTTTTCC
T ss_pred ccccccccccHHHHHHHHhcccCCEEEecCC--------CceeEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999852 24578999999999999999999999999999999999887
Q ss_pred HhhccccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcc-----hHHHHHHHH
Q 007733 316 TEVTTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEEM 386 (591)
Q Consensus 316 ~~~~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~l 386 (591)
+..++. .+++||++||++||++++ +++|++||++|++.+++ +|++++++||++++|.+.+ ..++.|.++
T Consensus 316 ~~~~~~-~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~~ 393 (592)
T 3puk_A 316 KATEGK-TSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPV 393 (592)
T ss_dssp --------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSSCTTCCSCSCCHHHHTTT
T ss_pred hcccCC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHH
Confidence 766555 689999999999999986 99999999999999987 8999999999999987643 367777776
Q ss_pred Hh-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhchh-HHHHHHHHHhcCCcccccCCcChHHHHhhcCcccc
Q 007733 387 IH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFE-HMATLNNLEKAGLFKKQETKSNWQLVKRALQLVED 464 (591)
Q Consensus 387 i~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~~-~~~~l~~l~~~gl~~~~~~~~~~~~~~k~l~l~~~ 464 (591)
|. .+.+.+|||||+|||+++++|+++++++.+ ++++|++ +..++.||+.+|+...++.+ . .+..
T Consensus 394 L~~~~~~~~dkLRL~lLy~L~~~g~~~~~~~~L----l~~~g~~~~~~~i~nl~~lg~~~~~~~~-~-------~~~~-- 459 (592)
T 3puk_A 394 LLNKNHDNCDKIRAVLLYIFGINGTTEENLDRL----IHNVKIEDDSDMIRNWSHLGVPIVPPSQ-Q-------AKPL-- 459 (592)
T ss_dssp TTSCSCCHHHHHHHHHHHHHHSCBCCHHHHHHH----HHHTCCCTTTHHHHGGGGGTCCSSSSBS-S-------CCCC--
T ss_pred HhCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH----HHHcCCChHHHHHHHHHHhCCccccCcc-c-------cCcc--
Confidence 65 678999999999999999999999988665 5778987 67889999999986544321 1 1111
Q ss_pred cCCCCCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCC--CCCCCCC--CCCCCcEE
Q 007733 465 TDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFD--MSQGLSS--SIDKRSLV 540 (591)
Q Consensus 465 ~~~~~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~--~~~~~~~--~~~~~~~v 540 (591)
....+.+..|.+|||+|++++++|+++++.++.- .++.+.++...... .+..+.| .| ..++ ...++++|
T Consensus 460 -rk~~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~--~fP~~~~~~~~~~~---~~~~s~r~~~w-~~~~~~~~~~~~ri 532 (592)
T 3puk_A 460 -RKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDSK--EWPYCSRCPAVWNG---SGAVSARQKPR-TNYLELDRKNGSRL 532 (592)
T ss_dssp -CCCCCCCCGGGSCCCCCTTHHHHHHHHTCCCCTT--TSCC-----------------------C-CCCCCCCCSCCSEE
T ss_pred -cccCCCCcceeeeccchHHHHHHHHHHhCCCCcc--cCCccCCCCCCccC---Ccccccccccc-ccCccccccCCCeE
Confidence 1123457789999999999999999999876641 12222221100000 0011222 12 1111 11237899
Q ss_pred EEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhh
Q 007733 541 LVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 588 (591)
Q Consensus 541 iVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~ 588 (591)
||||+||+||+|+|++|++++.. ++++|+||||+|+||++||++|..
T Consensus 533 iVFivGGvTysE~r~~~els~~~-~~~~vilG~T~i~np~~fl~~l~~ 579 (592)
T 3puk_A 533 IIFVIGGITYSEMRCAYEVSQAH-KSCEVIIGSTHILTPRKLLDDIKM 579 (592)
T ss_dssp EEEEETCEEHHHHHHHHHHHHHC-CSSEEEEEESSEECHHHHHHHHSS
T ss_pred EEEEeCCcCHHHHHHHHHHHhhc-CCceEEEeeCCcCCHHHHHHHHHH
Confidence 99999999999999999999984 469999999999999999999865
No 4
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1.6e-94 Score=795.36 Aligned_cols=546 Identities=16% Similarity=0.265 Sum_probs=440.2
Q ss_pred HHHHHHHHHHHH-HhhcC---CCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChH
Q 007733 16 SIREQSQRDLVN-ILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFI 88 (591)
Q Consensus 16 ~l~~~~~~~l~~-~l~~~---~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~ 88 (591)
+|++.++++|++ +|+++ ++|||||+|+.++++||++|++++|+++||+ ++.|+ |+|+|. ++|||||+||.+
T Consensus 5 ~lk~~~~~~l~~~~l~~~~~~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~--~~aIYfv~Pt~~ 82 (594)
T 1dn1_A 5 GLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS--LEAVYLITPSEK 82 (594)
T ss_dssp CHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTT--SEEEEEECCCHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCC--CceEEEEeCCHH
Confidence 489999999996 79886 6899999999999999999999999999999 89997 577764 799999999999
Q ss_pred HHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccc---
Q 007733 89 SMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQV--- 164 (591)
Q Consensus 89 ~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~--- 164 (591)
|+++|++|++++ .++.|++|||||+|.++....+.|++.++.+.|+ |.|+++||+|+|+|+|||++|++|..+|.
T Consensus 83 ni~~i~~d~~~~-~~~~Y~~y~i~Ft~~~~~~~le~La~~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~ 161 (594)
T 1dn1_A 83 SVHSLISDFKDP-PTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK 161 (594)
T ss_dssp HHHHHHHTTSSG-GGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGG
T ss_pred HHHHHHHHHhcc-cccccceEEEEeCCCCCHHHHHHHHhcchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCcc
Confidence 999999999863 2469999999999999998889999999999996 99999999999999999999999999998
Q ss_pred -cCCCchHHHHHHHHHHHHHHcCCCCeEEEeCCc--hHHHHHHHH-HhhhccCCC--CCCCCCCCcceEEEEecCCCCcc
Q 007733 165 -DGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKA--SVRVAEILN-RMQTEEPVS--LSDMNIPEINTLVLIDREVDMVT 238 (591)
Q Consensus 165 -~~d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~~--a~~va~~l~-~l~~~~~~~--~~~~~~~~~~~LiIlDR~~D~~T 238 (591)
+++.+.++.+|++|+++|.++|.+|.|||+|+. |+++|++++ ++......+ ....+...+++|||+||++|++|
T Consensus 162 ~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vT 241 (594)
T 1dn1_A 162 AQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSS 241 (594)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSST
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCccccc
Confidence 445678999999999999999999999999875 678898887 565533211 11112346789999999999999
Q ss_pred cccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhh
Q 007733 239 PMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEV 318 (591)
Q Consensus 239 Pll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~ 318 (591)
||+||||||||+||+|||++|+|+++....+ +.+++++.|+++|++|.++||+||++|++.|.+++++++++++..
T Consensus 242 PLlhq~TYqalv~dll~I~~n~v~~~~~~~~----~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~ 317 (594)
T 1dn1_A 242 PVLHELTFQAMSYDLLPIENDVYKYETSGIG----EARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN 317 (594)
T ss_dssp TTSCCCBHHHHHHHHSCCBTTEEEEEECSSS----SCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccccHHHHHHHHhcccCCEEEecCCCCC----CccceEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999764211 124678999999999999999999999999999999999987654
Q ss_pred -ccccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcc-----hHHHHHHHHHh
Q 007733 319 -TTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEEMIH 388 (591)
Q Consensus 319 -~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~li~ 388 (591)
.+. .+++||++||++||++++ +++|++||++|++.+++ .|++++++||++++|.+.+ ..++.|+++|.
T Consensus 318 ~~~~-~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~ 395 (594)
T 1dn1_A 318 TGEK-TTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL 395 (594)
T ss_dssp -------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHH
T ss_pred cccc-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHh
Confidence 233 688999999999999987 99999999999999987 7999999999999997642 47888998886
Q ss_pred -cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--hchhHHHHHHHHHhcCCcccccCCcChHHHHhhcCccccc
Q 007733 389 -KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHS--YGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDT 465 (591)
Q Consensus 389 -~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~--~g~~~~~~l~~l~~~gl~~~~~~~~~~~~~~k~l~l~~~~ 465 (591)
.+.+.+|||||+|||+++++|+++++++.+. ++ +|.+++.++.||+++|+...++.. .+|..+..
T Consensus 396 ~~~~~~~dkLRL~~Ly~l~~~g~~~~~~~~L~----~~~~~~~~~~~~i~nl~~lG~~~~~~~~-----~~k~~~~~--- 463 (594)
T 1dn1_A 396 DANVSTYDKIRIILLYIFLKNGITEENLNKLI----QHAQIPPEDSEIITNMAHLGVPIVTDST-----LRRRSKPE--- 463 (594)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCBCHHHHHHHH----HHHTCCHHHHHHHHHGGGGTCCCBCCCG-----GGCCCCCC---
T ss_pred CCCCChHhHHHHHHHHHHHcCCCCHHHHHHHH----HHcCCCHHHHHHHHHHHHhCCccccccc-----cccccccc---
Confidence 6789999999999999999999999988764 44 557889999999999976443321 01111111
Q ss_pred CCCCCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCC--CCCCCC-CC-CCCCcEEE
Q 007733 466 DTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFD--MSQGLS-SS-IDKRSLVL 541 (591)
Q Consensus 466 ~~~~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~--~~~~~~-~~-~~~~~~vi 541 (591)
....+.+..|.+|||+|++++++|+++++.++.. .++.+.++... .. ..+..|.| .|+..+ +. ..+++++|
T Consensus 464 ~k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~--~fP~~~~~~~~--~~-~~~~~s~r~~~w~~~~~~~~~~~~~rii 538 (594)
T 1dn1_A 464 RKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTK--HYPYISTRSSA--SF-STTAVSARYGHWHKNKAPGEYRSGPRLI 538 (594)
T ss_dssp CCCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTT--TSCCSSCC-----------------------------CCCCEEE
T ss_pred cccCCCCccceeeccchHHHHHHHHHHhCCCCcc--cCCccCCCCCc--cc-cccccccccccccccCCccccccCCcEE
Confidence 1112345678889999999999999999877641 12233222100 00 01112222 232222 11 12378999
Q ss_pred EEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhh
Q 007733 542 VVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 588 (591)
Q Consensus 542 VfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~ 588 (591)
|||+||+||+|+|+++++++.. ++++|+||||+|+||.+|+++|..
T Consensus 539 vFivGG~Ty~E~r~~~els~~~-~~~~VilG~t~il~p~~Fl~~l~~ 584 (594)
T 1dn1_A 539 IFILGGVSLNEMRCAYEVTQAN-GKWEVLIGSTHILTPQKLLDTLKK 584 (594)
T ss_dssp EEEETCEEHHHHHHHHHHHHHH-SSCEEEEEESSEECHHHHHHHHTT
T ss_pred EEEeCCccHHHHHHHHHHHhhc-CCceEEEeeCCcCCHHHHHHHHHH
Confidence 9999999999999999999985 368999999999999999999875
No 5
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=8.8e-94 Score=798.17 Aligned_cols=553 Identities=16% Similarity=0.277 Sum_probs=437.1
Q ss_pred CChHHHHHHHHHHHH-HHhhcCC---CceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEEC
Q 007733 12 LNLKSIREQSQRDLV-NILKNIR---GKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVG 84 (591)
Q Consensus 12 ~~l~~l~~~~~~~l~-~~l~~~~---g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~ 84 (591)
+.+.+|+++++++++ +++++++ .|||||+|+.++++||++|++++|+++||+ ++.|+ |+|+|. ++|||||+
T Consensus 13 ~~p~~l~~~~~~~~l~~~i~~v~~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~--~~aIyfv~ 90 (606)
T 3c98_A 13 MAPIGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS--LEAVYLIT 90 (606)
T ss_dssp ---CCHHHHHHHHHHHHTHHHHCBTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTT--SCEEEEEC
T ss_pred cCcHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCC--CCEEEEEc
Confidence 445669999999988 7998873 499999999999999999999999999999 89997 678874 78999999
Q ss_pred CChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeeccccccccc
Q 007733 85 PQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQ 163 (591)
Q Consensus 85 pt~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~ 163 (591)
||.+||++|++|++++ ..+.|++|||||+|.++..+.+.|++++..+.|. |.|+++||+|+|+|+|||++|++|..+|
T Consensus 91 Pt~eni~~i~~dl~~~-~~~~Y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~ 169 (606)
T 3c98_A 91 PSEKSVHSLISDFKDP-PTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFY 169 (606)
T ss_dssp CCHHHHHHHHHTTTSG-GGCCBSCEEEEESSCCCHHHHHHHHTSGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHH
T ss_pred CCHHHHHHHHHHhcch-hhcccCeEEEEECCCCCHHHHHHHHhcCcccccCeEEEEecchhhcCCcEEEecCCchHHHhc
Confidence 9999999999999875 3458999999999999999999999999999886 9999999999999999999999999998
Q ss_pred c----cCCCchHHHHHHHHHHHHHHcCCCCeEEEeCCc--hHHHHHHHHH-h---hhccCCCCCCCCCCCcceEEEEecC
Q 007733 164 V----DGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKA--SVRVAEILNR-M---QTEEPVSLSDMNIPEINTLVLIDRE 233 (591)
Q Consensus 164 ~----~~d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~~--a~~va~~l~~-l---~~~~~~~~~~~~~~~~~~LiIlDR~ 233 (591)
. +.+.+.++.+|++|+++|.++|.+|.|||+|+. |+.+|+++++ + ..+.. .........+++|||+||+
T Consensus 170 ~~~~~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~~~l~~~~~~~~-~~~~~~~~~~~~LlIlDR~ 248 (606)
T 3c98_A 170 SPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDP-TMGEGPDKARSQLLILDRG 248 (606)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHHHHHHHHHHHCT-TTTCSTTTTSCEEEEEEGG
T ss_pred CCcccccchHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHHHHHHHHHhcCC-cccCCCCCCCceEEEeecc
Confidence 6 345567999999999999999999999999853 5667777662 2 22221 1112224568899999999
Q ss_pred CCCcccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHH
Q 007733 234 VDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQ 313 (591)
Q Consensus 234 ~D~~TPll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~ 313 (591)
+|++|||+||||||||+||+|||++|.|+++....+ +..++++.|+++|+||.++||+||++|++.|.++++++++
T Consensus 249 ~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~----~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~ 324 (606)
T 3c98_A 249 FDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIG----EARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSS 324 (606)
T ss_dssp GCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESSS----SEEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHH
T ss_pred ccccchhcccccHHHHHHHHhCccCCeEEEecCCCC----CccceEeecCCCchhHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999764322 1246789999999999999999999999999999999999
Q ss_pred HHHhhccccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcc-----hHHHHHH
Q 007733 314 DYTEVTTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIE 384 (591)
Q Consensus 314 ~~~~~~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~ 384 (591)
+++..+..+.++++|++||++||++++ +++|++|+++|++.++ ++|++++++||+|++|.+.+ ..++.+.
T Consensus 325 ~~~~~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~~d~~~~~~~~~~~~i~ 403 (606)
T 3c98_A 325 SKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIV 403 (606)
T ss_dssp HTTC-------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHSBCTTSCBCSCTHHHHH
T ss_pred HHhhhcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 876655433588999999999999987 9999999999999997 58999999999999987643 4677888
Q ss_pred HHHh-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhchhHHHHHHHHHhcCCcccccCCcChHHHHhhcCccc
Q 007733 385 EMIH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVE 463 (591)
Q Consensus 385 ~li~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~l~~l~~~gl~~~~~~~~~~~~~~k~l~l~~ 463 (591)
++|. .+.+..|||||+|||+++++|+++++++.+.+. ..++.++..++.||+++|....+..... +..+
T Consensus 404 ~ll~~~~~~~~dkLRL~lLy~l~~~g~~~~~l~~~~~~--~~~~~~~~~~i~~l~~lg~~~~~~~~~~-----~~~~--- 473 (606)
T 3c98_A 404 PILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQH--AQIPPEDSEIITNMAHLGVPIVTDSTLR-----RRSK--- 473 (606)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHTTSBCHHHHHHHHHH--HTCCHHHHHHHHHGGGGTCCCBCCCTTT-----CCCC---
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhCCccccccccc-----cccc---
Confidence 8776 678999999999999999999999999887654 2456677889999999998654332110 0000
Q ss_pred ccCCCCCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCC--CCCCCC--CCCCCCcE
Q 007733 464 DTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFD--MSQGLS--SSIDKRSL 539 (591)
Q Consensus 464 ~~~~~~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~--~~~~~~--~~~~~~~~ 539 (591)
......+.+.+|+|+||+|++++++|.++++.++. +. ...+.+....... ....+.+ .|.... ....++++
T Consensus 474 ~~~~~~~~~~~~~~s~~~Pll~~lle~l~k~~L~~-~~-~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (606)
T 3c98_A 474 PERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDT-KH-YPYISTRSSASFS---TTAVSARYGHWHKNKAPGEYRSGPR 548 (606)
T ss_dssp CCCCCCCCCCCCTTCCCCCHHHHHHHHHHTTCSCT-TT-SCCSSCC-----------------------------CCCSE
T ss_pred hhhccCCcccccceecchHHHHHHHHHHHhCCCCc-cc-CcccCCCCccccc---ccccccccCCccccCCCCCCCCCCE
Confidence 01123456788999999999999999999976653 11 1112111100000 0001111 111111 11123788
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhhh
Q 007733 540 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 589 (591)
Q Consensus 540 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~~ 589 (591)
||||||||+||+|++++|+++++. ++++|+||||+|+||++||++|..-
T Consensus 549 iIVFvvGGvTy~E~~~l~~ls~~~-~~~~viiGsT~Iln~~~fl~~L~~L 597 (606)
T 3c98_A 549 LIIFILGGVSLNEMRCAYEVTQAN-GKWEVLIGSTHILTPQKLLDTLKKL 597 (606)
T ss_dssp EEEEEETCEEHHHHHHHHHHHHHH-SSCEEEEEESSEECHHHHHHHHTTT
T ss_pred EEEEEECCcCHHHHHHHHHHHHHc-CCcEEEEEeCCeeCHHHHHHHHHHh
Confidence 999999999999999999999885 3689999999999999999998753
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=3.3e-89 Score=766.35 Aligned_cols=538 Identities=18% Similarity=0.249 Sum_probs=404.5
Q ss_pred HHHHHHHHHHHHHHhhc---------------------CCCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CC
Q 007733 15 KSIREQSQRDLVNILKN---------------------IRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AE 70 (591)
Q Consensus 15 ~~l~~~~~~~l~~~l~~---------------------~~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~ 70 (591)
.+||+.+++.|.+||.. .++|||||+|+.++++||++|++++|+++||+ ++.|+ |+
T Consensus 17 ~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~r~ 96 (671)
T 1mqs_A 17 ISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRS 96 (671)
T ss_dssp CCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCCC
T ss_pred ccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCCCC
Confidence 45999999999999953 35799999999999999999999999999999 89997 56
Q ss_pred CCCCCCceEEEEECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHH----cCcCceee-EEEEccccee
Q 007733 71 PVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEE----EKVHNLMT-IGEYPLYMVP 145 (591)
Q Consensus 71 ~~~~~~~~~Iy~i~pt~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~----~~~~~~i~-v~e~~~df~p 145 (591)
|++ +.+|||||+|+.+|+++|++|++++ .|++|||+|+|.++....+.|++ .++.+.|+ |.|+++||+|
T Consensus 97 ~~~--~~~aIYfv~Pt~~ni~~i~~d~~~~----~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfip 170 (671)
T 1mqs_A 97 PLP--DVPAIYFVSPTKENIDIIVNDLKSD----KYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIV 170 (671)
T ss_dssp CEE--EEEEEEEECSCHHHHHHHHHHHHHT----CEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEE
T ss_pred CCC--CceEEEEeCCCHHHHHHHHHHhhhc----ccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceee
Confidence 665 3789999999999999999999875 99999999999988877777776 68889995 9999999999
Q ss_pred cCCCeEEeecccccccccccC--CC---chHHHHHHHHHHHHHHcCCCCeEEE-eCCchHHHHHHHHH-hhhccCC---C
Q 007733 146 LDEDVLSFELDLAHKEWQVDG--DA---SSLWHIAKAIHKLEFTFGLIPNVRA-KGKASVRVAEILNR-MQTEEPV---S 215 (591)
Q Consensus 146 ld~~lfsl~~~~~~~~~~~~~--d~---~~l~~ia~~L~~l~~~~g~~P~I~~-~g~~a~~va~~l~~-l~~~~~~---~ 215 (591)
+|+|+|||++|++|..+|.+. +. +.++.+|++|+++|.++|.+|.||| +|+.|++||++|.+ ++.+... +
T Consensus 171 le~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~~a~~va~~L~~~l~~~~~~~~~~ 250 (671)
T 1mqs_A 171 TEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSS 250 (671)
T ss_dssp CSTTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred ccCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCChHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999998765 33 6799999999999999999999986 68899999999984 4333211 1
Q ss_pred CCCC----CCCCcceEEEEecCCCCcccccchhhhhHHhhhhhcccCCeEEeCcccccccc-----CCCCceEeecCCCc
Q 007733 216 LSDM----NIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQ-----QDGKKMKVPLNSSD 286 (591)
Q Consensus 216 ~~~~----~~~~~~~LiIlDR~~D~~TPll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~-----~~~~~~~~~L~~~D 286 (591)
.++. +...+++|||+||++|++|||+||||||||+||+|||++|+|+++....+... +..+++++.|+++|
T Consensus 251 lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D 330 (671)
T 1mqs_A 251 STSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPND 330 (671)
T ss_dssp -----------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCCSSC
T ss_pred ccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEecCCCC
Confidence 1111 12467899999999999999999999999999999999999999864322100 01235789999999
Q ss_pred hhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccc-------------cccHHHHHHHHHhcCCcch----HHHHHHHHH
Q 007733 287 KLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTM-------------SQTVSELKDFVKKLNSLPE----MTRHINLAQ 349 (591)
Q Consensus 287 ~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~-------------~~~~~e~~~~v~~lp~~~~----l~~H~~l~~ 349 (591)
+||.++||+||++|++.|.++++++++++++.++. +.++++|++||++||++++ +++|++||+
T Consensus 331 ~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~ 410 (671)
T 1mqs_A 331 FFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFA 410 (671)
T ss_dssp TTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754431 1468999999999999986 999999999
Q ss_pred HHHHhcCchhhhchHHHHHHHHhcCCcchHHHHHHHHHhc--CCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHh
Q 007733 350 HLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHK--QEPLNKVLRLLILFSVTNS-GLPKKQFDYLRRELLHSY 426 (591)
Q Consensus 350 ~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~li~~--~~~~~d~lRLl~L~~l~~~-g~~~~~~~~l~~~~~~~~ 426 (591)
+|++.+++++|++++++||+|+. ....+.|+++|.. ..+..|||||+|||+++++ |+++++++.+++.+ +.+
T Consensus 411 ~l~~~i~~~~l~~~~e~EQ~l~~----~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~~l-~~~ 485 (671)
T 1mqs_A 411 ALLSQLESKSLDTFFEVEQDPGS----TKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYF-KEN 485 (671)
T ss_dssp HHHHHHHTTTCHHHHHHTSCCSS----HHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHH-HTT
T ss_pred HHHHHHhHhhHHHHHHHHHHHhc----CchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHc
Confidence 99999999999999999999972 2346789999975 3599999999999999999 99999999999886 889
Q ss_pred chhHHHHHHHHHhcCCcccccCCcChHHHHhhcCcc--cccC-----CCC-CCCccccccCccccHHHHHHHHHHcCCCc
Q 007733 427 GFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLV--EDTD-----TAN-PNDISYVFSGYAPLSIRLVQNAIRSGWRP 498 (591)
Q Consensus 427 g~~~~~~l~~l~~~gl~~~~~~~~~~~~~~k~l~l~--~~~~-----~~~-~~~~~~~~s~y~Pl~~rive~~~~~~~~~ 498 (591)
|++ +..+.++++++.+. +...+. +..+ ... ++|. |.|.+.|+++.+++++|..
T Consensus 486 G~~-~~~~~~l~~~~~l~------------~~~~l~~~~~~~~~~~~~~~~~~dl------~~~~~~r~~~~~~~~g~~~ 546 (671)
T 1mqs_A 486 DYD-INALKYVYKLREFM------------QLSNMSLQNKSLEDGSDSAFKPSNL------TLSGIYGLTEGKLQGGVGS 546 (671)
T ss_dssp TCC-CTHHHHHHHHHHHH------------HHHHHHSCCCCC------------------------CHHHHHTTTSSCSS
T ss_pred CCC-HHHHHHHHHHHHHh------------ccccccccccccccccccccccccc------ccccHHHHHHHHhccchhh
Confidence 986 33444444433211 000000 0000 000 1111 3344444444444333432
Q ss_pred -hHHHhhcCCCCcc---------------------------ccccCCCCCCCCCCCCCCCC-CCCCCCcEEEEEEEcCcC
Q 007733 499 -MEEILKLLPGPHY---------------------------ETKRGGFSSSPSFDMSQGLS-SSIDKRSLVLVVFVGGVT 549 (591)
Q Consensus 499 -~~~~~~~l~~~~~---------------------------~~~~~~~~~~~s~~~~~~~~-~~~~~~~~viVfviGGvT 549 (591)
++++.+.+|+.+. +...+. ..+. .++. +...+++++|||||||+|
T Consensus 547 ~~~~v~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~-----~~~~-~~~~~~~~~~~~~viVFvVGG~T 620 (671)
T 1mqs_A 547 LISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPK-----ITRG-SHTRKPKRQSYNKSLVFVVGGGN 620 (671)
T ss_dssp SHHHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTT-----SSSC-SSSCCCCCCCCSEEEEEEETCBC
T ss_pred HHHhHHhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCCC-----CcCC-CCCCCcccCCCCeEEEEEECCcc
Confidence 2233333333321 110000 0000 0000 111237999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCceEEEEecCCcCchhHHHhhhh
Q 007733 550 FAEISALRFLSAQE-GMAYDVIVGTTKIISGNSLAETFSE 588 (591)
Q Consensus 550 y~Ei~~l~~l~~~~-~~~~~iiigsT~il~~~~fl~~l~~ 588 (591)
|+|++++|+++++. ..+++|+||||+|+||++||++|..
T Consensus 621 y~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~ 660 (671)
T 1mqs_A 621 YLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISR 660 (671)
T ss_dssp HHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHH
Confidence 99999999999883 2479999999999999999999764
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.90 E-value=3.6e-24 Score=192.59 Aligned_cols=122 Identities=22% Similarity=0.297 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHhhc----------CCCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEE
Q 007733 15 KSIREQSQRDLVNILKN----------IRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVY 81 (591)
Q Consensus 15 ~~l~~~~~~~l~~~l~~----------~~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy 81 (591)
.+||+.++++|.+||+. .++|||||+|+.++++||.+|++++|+++||+ ++.|+ |+|++. .+|||
T Consensus 20 ~sLr~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~--~~aIY 97 (159)
T 1y9j_A 20 ASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRD--VPAVY 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTT--SCCEE
T ss_pred HHHHHHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCC--CCEEE
Confidence 48999999999999987 37899999999999999999999999999999 89997 577764 68999
Q ss_pred EECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHH----cCcCceee-EEEEccc
Q 007733 82 FVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEE----EKVHNLMT-IGEYPLY 142 (591)
Q Consensus 82 ~i~pt~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~----~~~~~~i~-v~e~~~d 142 (591)
||+||.+|+++|++|++++ +|++|||||+|.++....+.|++ .+..+.|+ |+|+++|
T Consensus 98 fv~Pt~enI~~i~~D~~~~----~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 98 FVMPTEENIDRLCQDLRNQ----LYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp EECCCHHHHHHHHHHHHHT----CBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred EecCCHHHHHHHHHHhhhc----ccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 9999999999999999875 99999999999999999999988 67788887 8888765
No 8
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=19.84 E-value=76 Score=29.52 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=28.9
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchh
Q 007733 539 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNS 581 (591)
Q Consensus 539 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~ 581 (591)
.+-|.+-||++-.-+..+.. . |.++++.++.|.+.++
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~---a---GAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISAS---H---GANIIVAGTSIFNAED 209 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHH---H---TCCEEEESHHHHTCSS
T ss_pred CCeEEEECCCCHHHHHHHHH---c---CCCEEEEeHHHhCCCC
Confidence 57789999999875555543 3 8999999999997643
No 9
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=18.83 E-value=80 Score=28.79 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=34.5
Q ss_pred EEEEEEEcCc-CHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhhh
Q 007733 539 LVLVVFVGGV-TFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 589 (591)
Q Consensus 539 ~viVfviGGv-Ty~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~~ 589 (591)
.+-|+..||+ |...+..+... |.+.++.++.+..|....+.+.+-
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~------Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDL------GVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHT------TCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHc------CCCEEEEChHHcCcHHHHHHHHHH
Confidence 3678899999 88888777653 677777788899988777776543
No 10
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=14.94 E-value=1.2e+02 Score=28.33 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=27.8
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCc
Q 007733 539 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISG 579 (591)
Q Consensus 539 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~ 579 (591)
.+.|.+.||+|-..+..+. +.+ .|.++++.++.|.++
T Consensus 187 ~~~I~vdGGI~~~~~~~~~---~~~-aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 187 EKLINIDGSMTLELAKYFK---QGT-HQIDWLVSGSALFSG 223 (237)
T ss_dssp GCEEEEESSCCHHHHHHHH---HSS-SCCCCEEECGGGGSS
T ss_pred CceEEEECCcCHHHHHHHH---HhC-CCCcEEEEeeHHhCC
Confidence 4679999999987766553 310 178999999999965
Done!