BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007734
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 152/566 (26%), Positives = 250/566 (44%), Gaps = 55/566 (9%)
Query: 40 MTVDHLHRFLIEVQKEDK--------ASKEDAQAIIDSLRELKHLNIFQRRGLNLEAFFK 91
MT +HL +F+ + Q++ + A + Q +ID E +N QR L+ E
Sbjct: 236 MTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKY-EPSGINA-QRGQLSPEGMVW 293
Query: 92 YLFGDINPPLSPTPVV-HHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGV 150
+L G N L+ ++ HHDMT P++HYFI + HN+YLT Q + S + L G
Sbjct: 294 FLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGC 353
Query: 151 RVIELDIWPNSKKDNVDVL-HGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHL-T 208
R +ELD W D ++ HG TMT + + + +I E AF S YP++++ E+H+ +
Sbjct: 354 RCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDS 413
Query: 209 PDLQAKVAEMVTQTLGEILFTPGSECLKEF--------PSPESLKRRIIISTXXXXXXXX 260
P QAK+AE G++L T E L++F PSPE L+ +I+I
Sbjct: 414 PRQQAKMAEYCRTIFGDMLLT---EPLEKFPLKPGVPLPSPEDLRGKILIKNKKNQFSGP 470
Query: 261 XXXXXXXXNDSQRGKGSADEEAWG---KEVPNLKSLNNSACXXXXXXXXXXXXXXXSDDK 317
+++ + W + + SD+
Sbjct: 471 TSSSKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEG 530
Query: 318 SQHNEAPEYRKLIA-IHAGKPKGGLKECLKVDPDKVRRL-SLSEQQLENAVGTYGNDIVR 375
+ E Y ++ + ++ +P + ++ + S +E + + + V
Sbjct: 531 TAGLEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVD 590
Query: 376 FTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQGHGRSLWLMHGMFRANGGCGY 435
+ +R + RIYPKG R+DSSNY P + W+ G QMVA N Q + +F NG GY
Sbjct: 591 YNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGY 650
Query: 436 VKKPNFLLQTGPHNEVFDP----KVKLPAKKTLKVTVYMGEGWYYDFPHTHFDAYSPPDF 491
+ K F+ + ++ F+P ++ + TL +TV G+ F +
Sbjct: 651 LLKHEFMRRP---DKQFNPFSVDRIDVVVATTLSITVISGQ----------FLSERSVRT 697
Query: 492 YARVGIAGVPADTVMKKTKTLE---DNWIPSWNEE-FEF-PLSVPELALLRIEVHEYDMS 546
Y V + G+P D + L ++ P W EE F F + +PELA LR+ V M
Sbjct: 698 YVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV----ME 753
Query: 547 EKDDFGGQTCLPVSELKQGIRAVPLH 572
E + F G +P++ L G + LH
Sbjct: 754 EGNKFLGHRIIPINALNSGYHHLCLH 779
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 126/236 (53%), Gaps = 12/236 (5%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S SE + + GN VR L RIYP G R DSSNY+P+ W+ G Q+VA N Q
Sbjct: 388 SFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQT 447
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFLLQTGPHNEVFDPKVKLPA----KKTLKVTVYMG 471
G + + G F+ NGGCGYV KP FL N F+ + + L+V + G
Sbjct: 448 PGPEMDVYLGCFQDNGGCGYVLKPAFLRDP---NTTFNSRALTQGPWWRPERLRVRIISG 504
Query: 472 EGWYYDFPHTHFDAYSPPDFYARVGIAGVPADTVMKKTKTLEDN-WIPSWNEEFEFPLSV 530
+ P + + S D V I GV DT ++T + +N + P W+ EFEF ++V
Sbjct: 505 Q----QLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTV 560
Query: 531 PELALLRIEVHEYDMSEKDDFGGQTCLPVSELKQGIRAVPLHDRKGERYKSVKLLM 586
P+LAL+R V +YD S K+DF GQ+ +P + LKQG R V L + G+++ S L +
Sbjct: 561 PDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 616
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 5/206 (2%)
Query: 39 TMTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFQRRGLNLEAFFKYLF-GDI 97
T++V+ L FL Q+E++A A ++I+ + +R + + F YL D
Sbjct: 93 TLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKA--QRQMTKDGFLMYLLSADG 150
Query: 98 NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDI 157
N V+ DM P+SHY + + HN+YL +QL S IRAL KG R +ELD
Sbjct: 151 NAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDC 210
Query: 158 WPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAE 217
W ++ + + HG T T+ + LR+I++YAF AS YPV+++LE+H + + Q +A
Sbjct: 211 WDGPNQEPI-IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMAR 269
Query: 218 MVTQTLGEILF-TPGSECLKEFPSPE 242
+ LG IL P PSPE
Sbjct: 270 HLRAILGPILLDQPLDGVTTSLPSPE 295
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 126/236 (53%), Gaps = 12/236 (5%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S SE + + GN VR L RIYP G R DSSNY+P+ W+ G Q+VA N Q
Sbjct: 390 SFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQT 449
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFLLQTGPHNEVFDPKVKLPA----KKTLKVTVYMG 471
G + + G F+ NGGCGYV KP FL N F+ + + L+V + G
Sbjct: 450 PGPEMDVYLGCFQDNGGCGYVLKPAFLRDP---NTTFNSRALTQGPWWRPERLRVRIISG 506
Query: 472 EGWYYDFPHTHFDAYSPPDFYARVGIAGVPADTVMKKTKTLEDN-WIPSWNEEFEFPLSV 530
+ P + + S D V I GV DT ++T + +N + P W+ EFEF ++V
Sbjct: 507 Q----QLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTV 562
Query: 531 PELALLRIEVHEYDMSEKDDFGGQTCLPVSELKQGIRAVPLHDRKGERYKSVKLLM 586
P+LAL+R V +YD S K+DF GQ+ +P + LKQG R V L + G+++ S L +
Sbjct: 563 PDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 618
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 5/206 (2%)
Query: 39 TMTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFQRRGLNLEAFFKYLF-GDI 97
T++V+ L FL Q+E++A A ++I+ + +R + + F YL D
Sbjct: 95 TLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKA--QRQMTKDGFLMYLLSADG 152
Query: 98 NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDI 157
N V+ DM P+SHY + + HN+YL +QL S IRAL KG R +ELD
Sbjct: 153 NAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDC 212
Query: 158 WPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAE 217
W ++ + + HG T T+ + LR+I++YAF AS YPV+++LE+H + + Q +A
Sbjct: 213 WDGPNQEPI-IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMAR 271
Query: 218 MVTQTLGEILF-TPGSECLKEFPSPE 242
+ LG IL P PSPE
Sbjct: 272 HLRAILGPILLDQPLDGVTTSLPSPE 297
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 18/223 (8%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S+ E Q N + D V + ++ + RIYPKG RVDSSNY P I W+ G Q+VA N Q
Sbjct: 543 SMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQC 602
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFLLQTGPHNEVFDPKVKLPAKKTLKVTVYMGEGWY 475
++ + G+F NG GY+ KP F+ + ++ FDP + + T+ +
Sbjct: 603 FDIAMCVNLGVFEYNGCSGYLLKPEFMRKL---DKRFDPFTESTVDGVVAGTIEI----- 654
Query: 476 YDFPHTHFDAYSPPDFYARVGIAGVPADTVMK--KTKTLEDNWIPSWNEEFEF---PLSV 530
F + Y V + G+P DTV K KTK +E+N + + +E F + +
Sbjct: 655 -KIISAQFLSDKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVL 713
Query: 531 PELALLRIEVHEYDMSEKDDFGGQTCLPVSELKQGIRAVPLHD 573
P+LA++RI V E E F G +P+ +K G R VPL +
Sbjct: 714 PDLAVVRIIVSE----ENGKFIGHRVMPLDGIKPGYRHVPLRN 752
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 32/247 (12%)
Query: 27 VKSMFDQYSEN-GTMTVDHLHRFLIEVQKEDKASKE------DAQ--AIIDSLRELKHLN 77
++ +F + S+N G +T FL ++Q+ K DAQ A+I+ +
Sbjct: 231 IEGIFKELSKNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDAQCEALINDYESAVNKK 290
Query: 78 IFQRRGLNLEAFFKYLFGDINPPLSPTPVVHHDMTA----PVSHYFIYTGHNSYLTGNQL 133
++ L E +L + N + TP+ D+ A ++ Y+I + HN+YLTG+QL
Sbjct: 291 GKKKGQLTKEGLLYFLMCEEN---NLTPMHRLDLGANMKLTLAAYYINSSHNTYLTGHQL 347
Query: 134 NSDCSDVPIIR-ALQKGVRVIELDIWPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAF 192
S V I R L G R +ELD W + + + HG TM V + +I E AF
Sbjct: 348 TGK-SSVEIYRQVLLTGCRCLELDCWDGKDGEPI-ITHGFTMCTEVLFKDVVYAIAESAF 405
Query: 193 VASEYPVVITLEDHLTPDLQAKVAEMVTQTLGEIL---------FTPGSECLKEFPSPES 243
S+YPV+++ E+H + Q +A+ + GE+L PG P+P
Sbjct: 406 KVSDYPVILSFENHCSVAQQKLLAQYCNEAFGELLLDKPIDGHPLKPGV----PLPTPYD 461
Query: 244 LKRRIII 250
L+++I+I
Sbjct: 462 LRKKILI 468
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 18/223 (8%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S+ E Q N + D V + ++ L RIYPKG RVDSSNY P I W+ G Q+VA N Q
Sbjct: 543 SMVETQALNKLKDNPEDFVDYNKKQLTRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQC 602
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFLLQTGPHNEVFDPKVKLPAKKTLKVTVYMGEGWY 475
++ + G+F NG GY+ KP F+ + ++ FDP + + T+ +
Sbjct: 603 FDVAMCVNLGVFEYNGCSGYLLKPEFMRKL---DKRFDPFTESTVDGVVAGTIEI----- 654
Query: 476 YDFPHTHFDAYSPPDFYARVGIAGVPADTVMK--KTKTLEDNWI-PSWNEE-FEF-PLSV 530
F + Y V + G+P DTV K KTKT+ +N + P +NE F F + +
Sbjct: 655 -KIISAQFLSDKQISSYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNENAFVFKKVVL 713
Query: 531 PELALLRIEVHEYDMSEKDDFGGQTCLPVSELKQGIRAVPLHD 573
P+LA++RI V+E + F G +P+ +K G R +PL +
Sbjct: 714 PDLAVVRIIVNE----DGGKFIGHRLMPLDGIKPGYRHIPLRN 752
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 19/216 (8%)
Query: 27 VKSMFDQYSEN-GTMTVDHLHRFLIEVQKEDKASKE------DAQ--AIIDSLRELKHLN 77
++ +F + S+N G +T FL ++Q+ K D+Q A+I+ +
Sbjct: 231 IEGIFKELSQNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDSQCDALINEYESAVNKK 290
Query: 78 IFQRRGLNLEAFFKYLFGDINPPLSPTPVVHHDMTA----PVSHYFIYTGHNSYLTGNQL 133
++ L E +L + N + TP+ D+ A ++ Y+I + HN+YLTG+QL
Sbjct: 291 GKKKGQLTKEGLLYFLMCEEN---NLTPMHRLDLGANMKLSLAAYYINSSHNTYLTGHQL 347
Query: 134 NSDCSDVPIIR-ALQKGVRVIELDIWPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAF 192
S V I R L G R +ELD W + + + HG TM V+ + +I E AF
Sbjct: 348 TGK-SSVEIYRQVLLTGCRCLELDCWDGKDGEPI-ITHGFTMCTEVQFKDVVHAIAECAF 405
Query: 193 VASEYPVVITLEDHLTPDLQAKVAEMVTQTLGEILF 228
SEYPV+++ E+H + Q +A+ + GE+L
Sbjct: 406 KVSEYPVILSFENHCSVPQQKLLAQYCHEAFGELLL 441
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 114/226 (50%), Gaps = 25/226 (11%)
Query: 372 DIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQGHGRSLWLMHGMFRANG 431
+ V + ++ L RIYPKG RVDSSNY P + W+ G Q+VA N Q ++ L G+F NG
Sbjct: 634 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 693
Query: 432 GCGYVKKPNFLLQTGPHNEVFDPKVKL----PAKKTLKVTVYMGEGWYYDFPHTHFDAYS 487
GY+ KP F+ + ++ FDP ++ L+V V G+ F +
Sbjct: 694 RSGYLLKPEFMRRP---DKSFDPFTEVIVDGIVANALRVKVISGQ----------FLSDR 740
Query: 488 PPDFYARVGIAGVPADTVMK-KTKTLEDN-WIPSWNEE-FEFP-LSVPELALLRIEVHEY 543
Y V + G+P DT K +T+T + N + P W+EE F+FP + +P LA LRI E
Sbjct: 741 KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE- 799
Query: 544 DMSEKDDFGGQTCLPVSELKQGIRAVPLHDRKGERYKSVKLLMHFE 589
E F G LPVS ++ G V L + + LL++ E
Sbjct: 800 ---EGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTE 842
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 20/228 (8%)
Query: 40 MTVDHLHRFLIEVQKEDKASK------EDAQAIIDSLRELKHLNIFQRRGLNLEAFFKYL 93
+T++ L F+ + Q++ + ++ +QA + + + +R +++E F +YL
Sbjct: 240 LTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYL 299
Query: 94 FGDINPPLSPTPV-VHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRV 152
G+ N L + + DMT P+S YFI + HN+YLT QL S +AL G R
Sbjct: 300 GGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRC 359
Query: 153 IELDIWPNS-KKDNVDVLHGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHL-TPD 210
+ELD+W ++ + HG TMT V L L +I E AF S YPV+++ E+H+ +
Sbjct: 360 VELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAK 419
Query: 211 LQAKVAEMVTQTLGEILFTPGSECLKEF--------PSPESLKRRIII 250
QAK+AE G+ L E L ++ PSP+ L RI++
Sbjct: 420 QQAKMAEYCRSIFGDALLI---EPLDKYPLAPGVPLPSPQDLMGRILV 464
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 114/226 (50%), Gaps = 25/226 (11%)
Query: 372 DIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQGHGRSLWLMHGMFRANG 431
+ V + ++ L RIYPKG RVDSSNY P + W+ G Q+VA N Q ++ L G+F NG
Sbjct: 636 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 695
Query: 432 GCGYVKKPNFLLQTGPHNEVFDPKVKL----PAKKTLKVTVYMGEGWYYDFPHTHFDAYS 487
GY+ KP F+ + ++ FDP ++ L+V V G+ F +
Sbjct: 696 RSGYLLKPEFMRRP---DKSFDPFTEVIVDGIVANALRVKVISGQ----------FLSDR 742
Query: 488 PPDFYARVGIAGVPADTVMK-KTKTLEDN-WIPSWNEE-FEFP-LSVPELALLRIEVHEY 543
Y V + G+P DT K +T+T + N + P W+EE F+FP + +P LA LRI E
Sbjct: 743 KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE- 801
Query: 544 DMSEKDDFGGQTCLPVSELKQGIRAVPLHDRKGERYKSVKLLMHFE 589
E F G LPVS ++ G V L + + LL++ E
Sbjct: 802 ---EGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTE 844
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 77 NIFQRRGLNLEAFFKYLFGDINPPLSPTPV-VHHDMTAPVSHYFIYTGHNSYLTGNQLNS 135
+R +++E F +YL G+ N L + + DMT P+S YFI + HN+YLT QL
Sbjct: 285 QFLERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAG 344
Query: 136 DCSDVPIIRALQKGVRVIELDIWPNSKKDNVD-VLHGGTMTAPVELIKCLRSIKEYAFVA 194
S +AL G R +ELD+W + + HG TMT V L L +I E AF
Sbjct: 345 TSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKT 404
Query: 195 SEYPVVITLEDHL-TPDLQAKVAEMVTQTLGEIL---------FTPGSECLKEFPSPESL 244
S YPV+++ E+H+ + QAK+AE G+ L PG PSP+ L
Sbjct: 405 SPYPVILSFENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGV----PLPSPQDL 460
Query: 245 KRRIII 250
RI++
Sbjct: 461 MGRILV 466
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 490 DFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPEL-ALLRIEVHEYDMSEK 548
D Y ++ + P +KTKT++ + P WNE F F L + L +E+ ++D++ +
Sbjct: 194 DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 253
Query: 549 DDFGGQTCLPVSELKQG 565
+DF G +SEL++
Sbjct: 254 NDFMGSLSFGISELQKA 270
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 490 DFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPEL-ALLRIEVHEYDMSEK 548
D Y ++ + P + +KTKT+ P WNE F F L + L +E+ ++D + +
Sbjct: 40 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTR 99
Query: 549 DDFGGQTCLPVSELKQ 564
+DF G VSEL +
Sbjct: 100 NDFXGSLSFGVSELXK 115
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 490 DFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPEL-ALLRIEVHEYDMSEK 548
D Y ++ + P +KTKT++ + P WNE F F L + L +E+ ++D++ +
Sbjct: 53 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 112
Query: 549 DDFGGQTCLPVSELKQG 565
+DF G +SEL++
Sbjct: 113 NDFMGSLSFGISELQKA 129
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 490 DFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPEL-ALLRIEVHEYDMSEK 548
D Y ++ + P + +KTKT+ P WNE F F L + L +E+ ++D + +
Sbjct: 39 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTR 98
Query: 549 DDFGGQTCLPVSEL 562
+DF G VSEL
Sbjct: 99 NDFMGSLSFGVSEL 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 490 DFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPEL-ALLRIEVHEYDMSEK 548
D Y ++ + P + +KTKT+ P WNE F F L + L +E+ ++D + +
Sbjct: 38 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTR 97
Query: 549 DDFGGQTCLPVSEL 562
+DF G VSEL
Sbjct: 98 NDFMGSLSFGVSEL 111
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 490 DFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPELA-LLRIEVHEYDMSEK 548
D Y ++ + P + +KT+T++ P WNE F F L ++ L +EV ++D + +
Sbjct: 42 DPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSR 101
Query: 549 DDFGGQTCLPVSEL 562
+DF G VSEL
Sbjct: 102 NDFMGAMSFGVSEL 115
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 484 DAYSPPDFYARVG--IAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPELALLRIEVH 541
D + D Y ++ +A + + +TKT++ P WNEEF F ++ P L EV
Sbjct: 37 DIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVN-PSNHRLLFEVF 95
Query: 542 EYDMSEKDDFGGQTCLPVSEL 562
+ + +DDF GQ +P+S L
Sbjct: 96 DENRLTRDDFLGQVDVPLSHL 116
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 484 DAYSPPDFYARVGIAGVPADTVMK--KTKTLEDNWIPSWNEEFEFPLSVPELALLRIEVH 541
D D Y RV + P + V+ +TKT++ + P WNEE F + P+ L EV
Sbjct: 36 DILGASDPYVRVTLYD-PMNGVLTSVQTKTIKKSLNPKWNEEILFRVH-PQQHRLLFEVF 93
Query: 542 EYDMSEKDDFGGQTCLPVSEL 562
+ + +DDF GQ +P+ L
Sbjct: 94 DENRLTRDDFLGQVDVPLYPL 114
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 490 DFYARVGIAGVPADTVMK--KTKTLEDNWIPSWNEEFEFPLSVPELALLRIEVHEYDMSE 547
D Y RV + P ++ +TKT++ + P WNEE F + +P+ + EV + +
Sbjct: 30 DPYVRVTLYD-PMSGILTSVQTKTIKKSLNPKWNEEILFRV-LPQRHRILFEVFDENRLT 87
Query: 548 KDDFGGQTCLPVSEL 562
+DDF GQ +P+ L
Sbjct: 88 RDDFLGQVDVPLYPL 102
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 484 DAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPELALLRIEVHEY 543
D PD Y + I+ P K+T+ ++ P WNE FEF L + +L I + +
Sbjct: 37 DMLDTPDPYVELFISTTPDSR--KRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94
Query: 544 DMSEKDDFGGQTCLPVSELKQG 565
+ D+ G VS +K G
Sbjct: 95 NYV-MDETLGTATFTVSSMKVG 115
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 484 DAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPELALLRIEVHEY 543
D PD Y + I+ P K+T+ ++ P WNE FEF L + +L I + +
Sbjct: 22 DMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 79
Query: 544 DMSEKDDFGGQTCLPVSELKQG 565
+ + G T VS +K G
Sbjct: 80 NYVMDETLGTAT-FTVSSMKVG 100
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 484 DAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPELALLRIEVHEY 543
D PD Y + I+ P K+T+ ++ P WNE FEF L + +L I + +
Sbjct: 37 DMLDTPDPYVELFISTTPDSR--KRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94
Query: 544 DMSEKDDFGGQTCLPVSELKQG 565
+ + G T VS +K G
Sbjct: 95 NYVMDETLGTAT-FTVSSMKVG 115
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 508 KTKTLEDNWIPSWNEEFEFPLSVPELAL--LRIEVHEYDMSEKDDFGGQTCLPVS----E 561
K KTL P +NEEF + + +LA L I V +YD+ + +D+ G L +S
Sbjct: 59 KKKTLN----PEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 114
Query: 562 LKQGIRAVPLHDRKGERYKSVK 583
LK + D+K ER+ ++
Sbjct: 115 LKHWYECLKNKDKKIERWHQLQ 136
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 509 TKTLEDNWIPSWNEEFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELK 563
T+T++D P WN +F + +L + + + D DDF G+T +PV++++
Sbjct: 423 TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIR 477
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 508 KTKTLEDNWIPSWNEEFEFPLSVPELA--LLRIEVHEYDMSEKDDFGGQTCLPVS----E 561
K KTL P +NEEF + + +LA L I V +YD+ + +D+ G L +S
Sbjct: 81 KKKTLN----PEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 136
Query: 562 LKQGIRAVPLHDRKGERYKSVK 583
LK + D+K ER+ ++
Sbjct: 137 LKHWYECLKNKDKKIERWHQLQ 158
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 508 KTKTLEDNWIPSWNEEFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELKQG 565
+T T+ N P WN+ F FP+ +L + V + D + DF G+ +P+ ++ G
Sbjct: 48 QTHTVYKNLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 508 KTKTLEDNWIPSWNEEFEFPLSVPELA--LLRIEVHEYDMSEKDDFGGQTCLPVS----E 561
K KTL P +NEEF + + +LA L I V +YD+ + +D+ G L +S
Sbjct: 81 KKKTLN----PEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 136
Query: 562 LKQGIRAVPLHDRKGERYKSVK 583
LK + D+K ER+ ++
Sbjct: 137 LKHWYECLKNKDKKIERWHQLQ 158
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 483 FDAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPE---LALLRIE 539
D+ D Y ++ + + + +TKTL + P WNE ++ E LRI
Sbjct: 44 MDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103
Query: 540 VHEYDMSEKDDFGGQTCLPVSELKQGIR 567
V + D ++F G+T + +LK R
Sbjct: 104 VCDEDKFGHNEFIGETRFSLKKLKANQR 131
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 483 FDAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPE---LALLRIE 539
D+ D Y ++ + + + +TKTL + P WNE ++ E LRI
Sbjct: 42 MDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 101
Query: 540 VHEYDMSEKDDFGGQTCLPVSELKQGIR 567
V + D ++F G+T + +LK R
Sbjct: 102 VCDEDKFGHNEFIGETRFSLKKLKANQR 129
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 508 KTKTLEDNWIPSWNEEFEF---PLS-VPELALLRIEVHEYDMSEKDDFGGQTCLPVS--E 561
KT+ L P+++E F F P + + ELAL + +D +DD G+ +P+S E
Sbjct: 61 KTRVLRKTLDPAFDETFTFYGIPYTQIQELAL-HFTILSFDRFSRDDIIGEVLIPLSGIE 119
Query: 562 LKQG 565
L +G
Sbjct: 120 LSEG 123
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 477 DFPHTHFDAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPELAL- 535
D P + +S P V I +P +TK P +NE F+F + + ELA
Sbjct: 32 DLPAKDSNGFSDP----YVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQR 87
Query: 536 -LRIEVHEYDMSEKDDFGGQTCL 557
L V+++D + D GQ L
Sbjct: 88 KLHFSVYDFDRFSRHDLIGQVVL 110
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 477 DFPHTHFDAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEFEFPLSVPELAL- 535
D P + +S P V I +P +TK P +NE F+F + + ELA
Sbjct: 31 DLPAKDSNGFSDP----YVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQR 86
Query: 536 -LRIEVHEYDMSEKDDFGGQTCL 557
L V+++D + D GQ L
Sbjct: 87 KLHFSVYDFDRFSRHDLIGQVVL 109
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 477 DFPHTHFDAYSPPDFYARVGIAGVPADTVMKKTKTLEDNWIPSWNEEF---EFPLSVPEL 533
+ P F S P V I +P +TK N P WNE F FP
Sbjct: 37 ELPAKDFSGTSDP----FVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQ 92
Query: 534 ALLRIEVHEYDMSEKDDFGGQTCLPVSEL 562
+L ++V +YD ++D G+ +P++++
Sbjct: 93 RILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 507 KKTKTLEDNWIPSWNEEFEFPLS----------VPELALLRIEVHEYDMSEKDDFGGQTC 556
K+TKT+ N P W E F F + E ++ V + E DDF GQT
Sbjct: 51 KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTI 110
Query: 557 LPVSEL 562
+ V L
Sbjct: 111 IEVRTL 116
>pdb|1V30|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0828 From
Pyrococcus Horikoshii
Length = 124
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 499 GVPADTVMKKTKTLEDNWIPSWNEEFEF-PLSVPELALLRIEVHEYD 544
G P +K K L ++WI + FE+ P +V L++EV+E D
Sbjct: 19 GKPLHWYLKGAKFLGEDWIEGYQLYFEYLPYAVKGKGKLKVEVYEVD 65
>pdb|4FWW|A Chain A, Crystal Structure Of The Sema-Psi Extracellular Domains Of
Human Ron Receptor Tyrosine Kinase
Length = 527
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 133 LNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAF 192
++S S V + L V+V L + ++ DNV V H GTM + ++ +RS+ +
Sbjct: 388 VSSSFSRVDLFNGLLGPVQVTALYV---TRLDNVTVAHMGTMDGRILQVELVRSLNYLLY 444
Query: 193 VA------SEYPV---VITLEDHLTPDLQAKVAEMVTQTLGEILFTPGSECLKEF 238
V+ S PV V L DHL +V ++ Q G F CL+ +
Sbjct: 445 VSNFSLGDSGQPVQRDVSRLGDHLLFASGDQVFQVPIQGPGCRHFLTCGRCLRAW 499
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 508 KTKTLEDNWIPSWNEEFEFPLSVPELA--LLRIEVHEYDMSEKDDFGGQTCLPVSELKQG 565
+TK P +NE+F F + ELA L + V+++D K D G+ +P++ + G
Sbjct: 57 ETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,970,822
Number of Sequences: 62578
Number of extensions: 769347
Number of successful extensions: 1872
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 42
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)