BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007735
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 173/572 (30%), Positives = 277/572 (48%), Gaps = 64/572 (11%)
Query: 29 YFDFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLD-ESLLIHWSGI 87
++ +EV Y+ +P V+ ING+FPGPTI NKL E ++IHW GI
Sbjct: 5 HYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGI 64
Query: 88 QQRRSSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINN 146
QR + W DG + C I P + Y F V D G+FFY L QR++G +G I++
Sbjct: 65 LQRGTPWADGTASISQCAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDP 123
Query: 147 RAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAG--KGLGMPDGVLINGKGPY---- 200
PF DG+I +L+ DW+ ++ L + + +G P +L+NG+G +
Sbjct: 124 PQGKKEPFHY-DGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSI 182
Query: 201 --QYNTTLVP------DGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETE 252
+Y++ L P + V P KTYRIR+ + +LNF I NH LL+ E +
Sbjct: 183 AAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEAD 242
Query: 253 GSYTVQQNYTS-LDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHY 311
G+Y VQ YTS +DI+ G+SYS L+T DQN S +Y++ R + + G+ +L+Y
Sbjct: 243 GNY-VQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNT---PPGLTLLNY 298
Query: 312 -TNSKGK-ARGPLPEGPN-DEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTE 368
NS K P P+ P D+FD++ ++ + ++A+ P P F
Sbjct: 299 LPNSVSKLPTSPPPQTPAWDDFDRS------KNFTYRITAAMGSPKPPVKFN------RR 346
Query: 369 VYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTK------PVT 422
+++L + +I+G + ++ +S P TP A + + A+ + P + +
Sbjct: 347 IFLLNTQ--NVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDID 404
Query: 423 GPPRME-TSVINGTYR----GFMEVILQN------NDTKMHAYHMSGYAFFVVGMDYGEW 471
PP E T + NG Y+ ++VILQN N ++ H +H+ G+ F+V+G G++
Sbjct: 405 TPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKF 464
Query: 472 TDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVV 531
+ + N + R T ++P WTAI DN G+W ++G + VV
Sbjct: 465 SAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMG----MGVV 520
Query: 532 NPEATNKTEFPIPDNALFCG--ALSHLQKPED 561
E K IP AL CG A S + P++
Sbjct: 521 FAEGVEKVGR-IPTKALACGGTAKSLINNPKN 551
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 137/310 (44%), Gaps = 30/310 (9%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLD-----ESLLIHWS 85
D ++ SP G +Q + +NG PGP I + L +S IHW
Sbjct: 7 DLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q+ ++W DG N CPI ++ Y FQV DQ G+F+Y L Q G G F++
Sbjct: 67 GFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 145 ---NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQ 201
N+ A +D + D I + DWY H A + L LG D LINGKG
Sbjct: 127 YDPNDPAADL--YDVDNDDTVITLVDWY---HVAAK--LGPAFPLGA-DATLINGKGRSP 178
Query: 202 YNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNY 261
TT D I V PGK YR R+ ++ + F I HN+ + ET+ T
Sbjct: 179 STTTA-----DLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVV 233
Query: 262 TSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVN-------ESQWKRVTGVAILHYTNS 314
S+ I Q YSF++ +Q A +Y+I A+ F N S R G A + T +
Sbjct: 234 DSIQIFAAQRYSFVLEANQ-AVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTT 292
Query: 315 KGKARGPLPE 324
+ + PL E
Sbjct: 293 QTTSTAPLNE 302
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 134/308 (43%), Gaps = 26/308 (8%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLD-----ESLLIHWS 85
D ++ SP G +Q + +NG PGP + + L +S IHW
Sbjct: 7 DLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q ++W DG N CPI P ++ Y FQV DQ G+F+Y L Q G G F++
Sbjct: 67 GFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 145 -NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYN 203
+ +D + D I + DWY HTA + + G D LINGKG +
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY---HTAAKL---GPRFPGGADATLINGKGRAPSD 180
Query: 204 TTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTS 263
+ + I+V GK YR R+ ++ + + F I HNL + E + + S
Sbjct: 181 SVA-----ELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDS 235
Query: 264 LDIHVGQSYSFLVTMDQNASTDYYIVASARFVN-------ESQWKRVTGVAILHYTNSKG 316
+ I Q YSF++ +Q A +Y+I A+ F N S R G + T ++
Sbjct: 236 IQIFAAQRYSFVLDANQ-AVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQT 294
Query: 317 KARGPLPE 324
+ PL E
Sbjct: 295 TSVKPLNE 302
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 134/308 (43%), Gaps = 26/308 (8%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLD-----ESLLIHWS 85
D ++ SP G +Q + +NG PGP + + L +S IHW
Sbjct: 7 DLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q ++W DG N CPI P ++ Y FQV DQ G+F+Y L Q G G F++
Sbjct: 67 GFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 145 -NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYN 203
+ +D + D I + DWY HTA + + G D LINGKG +
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY---HTAAKL---GPRFPGGADATLINGKGRAPSD 180
Query: 204 TTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTS 263
+ + I+V GK YR R+ ++ + + F I HNL + E + + S
Sbjct: 181 SVA-----ELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDS 235
Query: 264 LDIHVGQSYSFLVTMDQNASTDYYIVASARFVN-------ESQWKRVTGVAILHYTNSKG 316
+ I Q YSF++ +Q A +Y+I A+ F N S R G + T ++
Sbjct: 236 IQIFAAQRYSFVLDANQ-AVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQT 294
Query: 317 KARGPLPE 324
+ PL E
Sbjct: 295 TSVKPLNE 302
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 135/310 (43%), Gaps = 30/310 (9%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWS 85
D ++ SP G +Q + +NG PGP + + L + +HW
Sbjct: 7 DNTITDAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q+ ++W DG N CPI P ++ Y FQV +Q G+F+Y L Q G G F++
Sbjct: 67 GFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 145 -NNRAIIPIPFDTPDGDITILIGDWYTRNHTA--LRKTLDAGKGLGMPDGVLINGKGPYQ 201
+ +D + D I + DWY HTA L AG D LINGKG
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY---HTAAKLGPRFPAGA-----DATLINGKGRAP 178
Query: 202 YNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNY 261
+T+ + I+V GK R R+ ++ + F I HNL + E + S + +
Sbjct: 179 SDTSA-----ELSVIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSV 233
Query: 262 TSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVN-------ESQWKRVTGVAILHYTNS 314
S+ I Q YSF++ +Q A +Y+I A+ F N S R G + T +
Sbjct: 234 DSIQIFAAQRYSFVLNANQ-AVDNYWIRANPNFGNVGFNGGINSAILRYDGAPAVEPTTN 292
Query: 315 KGKARGPLPE 324
+ + PL E
Sbjct: 293 QTTSVKPLNE 302
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 133/311 (42%), Gaps = 32/311 (10%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWS 85
D ++ SP G +Q + +NG PGP + + L + +HW
Sbjct: 7 DNTITNAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q+ ++W DG N CPI P ++ Y FQV +Q G+F+Y L Q G G F++
Sbjct: 67 GFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 145 -NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGV---LINGKGPY 200
+ +D + D TI + DWY HTA A G P+G LINGKG
Sbjct: 127 YDPNDPHASRYDVDNDDTTITLADWY---HTA------AKLGPAFPNGADSTLINGKGRA 177
Query: 201 QYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN 260
+++ + V GK R R+ ++ + F I HN + ET+ + N
Sbjct: 178 PSDSSA-----QLSVVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLN 232
Query: 261 YTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVN-------ESQWKRVTGVAILHYTN 313
S+ I Q YSF + +Q A +Y+I A+ F N S R G + T
Sbjct: 233 TDSIQIFAAQRYSFTLNANQ-AVDNYWIRANPNFGNVGFNGGINSAILRYDGAPAVEPTT 291
Query: 314 SKGKARGPLPE 324
++ + PL E
Sbjct: 292 NQSTSTQPLNE 302
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 134/507 (26%), Positives = 186/507 (36%), Gaps = 84/507 (16%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXX-----XXXXXXXXRNKLDESLLIHWS 85
D +S SP G +Q I +N FP P I + + +S IHW
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q ++W DG N CPI + Y FQV DQ G+F+Y L Q G G ++
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 145 ----NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPY 200
+ A + +D D I + DWY H A + G + D LING G
Sbjct: 127 YDPNDPHASL---YDVDDDSTVITLADWY---HLAAK----VGAPVPTADATLINGLG-- 174
Query: 201 QYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN 260
+ TL D I V GK YR R+ ++ + F I H+L + E +
Sbjct: 175 RSAATL---AADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHT 231
Query: 261 YTSLDIHVGQSYSFLVTMDQNASTDYYIVA-----SARFV--NESQWKRVTGVAILHYTN 313
SL I Q YSF++ DQ+ +Y+I A + F S R G A + T
Sbjct: 232 VDSLQIFAAQRYSFVLNADQDVD-NYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEPTT 290
Query: 314 SKGKARGPLPEGPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLR 373
S+ + PL E A + +A G+ P P G V +
Sbjct: 291 SQTPSTNPLVE-------------SALTTLKGTAAPGS-PTPGG-----------VDLAL 325
Query: 374 NKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPR---METS 430
N G T++G SF P+ P+ L + A L P V P +E S
Sbjct: 326 NMAFGFAGGNF--TINGASFTPPTVPVLLQILSGAQSAADL-LPAGSVYSLPANADIEIS 382
Query: 431 V-INGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTT 489
+ GF H +H+ G+ F VV TYN + + R
Sbjct: 383 LPATAAAPGF-----------PHPFHLHGHVFAVV-------RSAGSSTYNYANPVYRDV 424
Query: 490 TQV-YPGAWTAILVSLDNVGIWNLRTE 515
PG I DN G W L
Sbjct: 425 VSTGAPGDNVTIRFRTDNPGPWFLHCH 451
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 134/507 (26%), Positives = 186/507 (36%), Gaps = 84/507 (16%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXX-----XXXXXXXXRNKLDESLLIHWS 85
D +S SP G +Q I +N FP P I + + +S IHW
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q ++W DG N CPI + Y FQV DQ G+F+Y L Q G G ++
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 145 ----NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPY 200
+ A + +D D I + DWY H A + G + D LING G
Sbjct: 127 YDPNDPHASL---YDVDDDSTVITLADWY---HLAAK----VGAPVPTADATLINGLG-- 174
Query: 201 QYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN 260
+ TL D I V GK YR R+ ++ + F I H+L + E +
Sbjct: 175 RSAATL---AADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHT 231
Query: 261 YTSLDIHVGQSYSFLVTMDQNASTDYYIVA-----SARFV--NESQWKRVTGVAILHYTN 313
SL I Q YSF++ DQ+ +Y+I A + F S R G A + T
Sbjct: 232 VDSLQIFAAQRYSFVLNADQDVD-NYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEPTT 290
Query: 314 SKGKARGPLPEGPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLR 373
S+ + PL E A + +A G+ P P G V +
Sbjct: 291 SQTPSTNPLVE-------------SALTTLKGTAAPGS-PTPGG-----------VDLAL 325
Query: 374 NKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPR---METS 430
N G T++G SF P+ P+ L + A L P V P +E S
Sbjct: 326 NMAFGFAGGNF--TINGASFTPPTVPVLLQILSGAQSAADL-LPAGSVYSLPANADIEIS 382
Query: 431 V-INGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTT 489
+ GF H +H+ G+ F VV TYN + + R
Sbjct: 383 LPATAAAPGF-----------PHPFHLHGHVFAVV-------RSAGSSTYNYANPVYRDV 424
Query: 490 TQV-YPGAWTAILVSLDNVGIWNLRTE 515
PG I DN G W L
Sbjct: 425 VSTGAPGDNVTIRFRTDNPGPWFLHCH 451
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 133/508 (26%), Positives = 188/508 (37%), Gaps = 86/508 (16%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXX-----XXXXXXXXRNKLDESLLIHWS 85
D +S SP G +Q I +N FP P I + + +S IHW
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q ++W DG N CPI + Y FQV DQ G+F+Y L Q G G ++
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 145 NN-----RAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGP 199
+ +++ +D D I + DWY H A + G + D LING G
Sbjct: 127 YDPQDPHKSL----YDVDDDSTVITLADWY---HLAAK----VGSPVPTADATLINGLG- 174
Query: 200 YQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQ 259
+ TL D I V GK YR R+ ++ + F I H+L + E + Q
Sbjct: 175 -RSIDTL---NADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQ 230
Query: 260 NYTSLDIHVGQSYSFLVTMDQNASTDYYIVA----SARFVN---ESQWKRVTGVAILHYT 312
S+ I Q YSF++ DQ+ +Y+I A R + S R G A + T
Sbjct: 231 TVDSIQIFAAQRYSFVLNADQDVG-NYWIRALPNSGTRNFDGGVNSAILRYDGAAPVEPT 289
Query: 313 NSKGKARGPLPEGPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVL 372
S+ + PL E + T A+ P P G V +
Sbjct: 290 TSQTPSTNPLVESALTTLEGT--------------AAPGSPAPGG-----------VDLA 324
Query: 373 RNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPR---MET 429
N GK T++G SF P+ P+ L + A L P+ V P +E
Sbjct: 325 LNMAFGFAGGKF--TINGASFTPPTVPVLLQILSGAQSAQDL-LPSGSVYSLPANADIEI 381
Query: 430 SV-INGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIART 488
S+ GF H +H+ G+ F VV TYN + + R
Sbjct: 382 SLPATAAAPGF-----------PHPFHLHGHTFAVV-------RSAGSSTYNYENPVYRD 423
Query: 489 TTQV-YPGAWTAILVSLDNVGIWNLRTE 515
PG I DN G W L
Sbjct: 424 VVSTGSPGDNVTIRFRTDNPGPWFLHCH 451
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/486 (25%), Positives = 179/486 (36%), Gaps = 69/486 (14%)
Query: 40 SPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWSGIQQRRSSW 94
SP G + I +NG GP I N LD + IHW G+ QR ++W
Sbjct: 17 SPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNW 75
Query: 95 QDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII-NNRAIIPI 152
DG G N CPI P + Y+F G+F+Y Q G G +I ++
Sbjct: 76 ADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAA 135
Query: 153 PFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGID 212
+D D + I + DWY ++ +G PD LINGKG Y +
Sbjct: 136 LYDEDDENTIITLADWYHIPAPSI-------QGAAQPDATLINGKGRYVGGPA-----AE 183
Query: 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSY 272
+ V GK YR+R+ ++ + F I H L + E +G T L I GQ Y
Sbjct: 184 LSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRY 243
Query: 273 SFLVTMDQNASTDYYIVAS----ARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPND 328
SF+ +D N D Y + + R + AIL Y + A PN
Sbjct: 244 SFV--LDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA-ANADPTTSANPNP 300
Query: 329 EFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATL 388
+N+A A+ P P G+ +V + L R T+
Sbjct: 301 A-----QLNEADLHALIDPAAPGIPTP------GAADVNLRFQLGFS-------GGRFTI 342
Query: 389 SGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPR---METSVINGTYRGFMEVILQ 445
+G ++ +PS P L + A L P V PR +E V G G
Sbjct: 343 NGTAYESPSVPTLLQIMSGAQSANDL-LPAGSVYELPRNQVVELVVPAGVLGG------- 394
Query: 446 NNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQV-YPGAWTAILVSL 504
H +H+ G+AF VV TYN + + R + G I
Sbjct: 395 -----PHPFHLHGHAFSVV-------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVT 442
Query: 505 DNVGIW 510
DN G W
Sbjct: 443 DNPGPW 448
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/486 (25%), Positives = 180/486 (37%), Gaps = 69/486 (14%)
Query: 40 SPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWSGIQQRRSSW 94
SP G + I +NG GP I N LD + IHW G+ QR ++W
Sbjct: 17 SPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNW 75
Query: 95 QDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII-NNRAIIPI 152
DG G N CPI P + Y+F G+F+Y Q G G +I ++
Sbjct: 76 ADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAA 135
Query: 153 PFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGID 212
+D D + I + DWY ++ +G PD LINGKG Y + +
Sbjct: 136 LYDEDDENTIITLADWYHIPAPSI-------QGAAQPDATLINGKGRY-----VGGPAAE 183
Query: 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSY 272
+ V GK YR+R+ ++ + F I H L + E +G T L I GQ Y
Sbjct: 184 LSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRY 243
Query: 273 SFLVTMDQNASTDYYIVAS----ARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPND 328
SF+ +D N D Y + + R + AIL Y + A PN
Sbjct: 244 SFV--LDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA-ANADPTTSANPNP 300
Query: 329 EFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATL 388
+N+A A+ P P G+ +V + L R T+
Sbjct: 301 A-----QLNEADLHALIDPAAPGIPTP------GAADVNLRFQLGFS-------GGRFTI 342
Query: 389 SGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPR---METSVINGTYRGFMEVILQ 445
+G ++ +PS P L + A L P V PR +E V G G
Sbjct: 343 NGTAYESPSVPTLLQIMSGAQSANDL-LPAGSVYELPRNQVVELVVPAGVLGG------- 394
Query: 446 NNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQV-YPGAWTAILVSL 504
H +H+ G+AF VV TYN + + R + G I
Sbjct: 395 -----PHPFHLHGHAFSVV-------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVT 442
Query: 505 DNVGIW 510
DN G W
Sbjct: 443 DNPGPW 448
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 125/295 (42%), Gaps = 26/295 (8%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWS 85
D V+ P G + I +N FP P I N++ + IHW
Sbjct: 7 DLTVTNANIVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q+ ++W DG N CPI ++ Y FQV Q G+F+Y L Q G G F++
Sbjct: 67 GFFQKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 145 ----NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPY 200
+ A + +D D I + DWY H A + KG D LING G
Sbjct: 127 YDPNDPHANL---YDVDDESTVITLADWY---HVAAKLGPRFPKGA---DSTLINGLG-- 175
Query: 201 QYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN 260
+T P D I V GK YR R+ ++ + F I +H L + E +G T
Sbjct: 176 --RSTSTPTA-DLAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVT 232
Query: 261 YTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSK 315
S+ I Q YSF++ +Q+ +Y+I A+ F + + AIL Y ++
Sbjct: 233 VDSIQIFAAQRYSFVLNANQDVD-NYWIRANPNF-GTTGFADGVNSAILRYDDAD 285
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 128/320 (40%), Gaps = 39/320 (12%)
Query: 34 VSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLD-----ESLLIHWSGIQ 88
V+ SP G + I +NG FP P I + L +S IHW G
Sbjct: 10 VANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFF 69
Query: 89 QRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII-NN 146
Q ++W DG N CPI ++ Y F V DQ G+F+Y L Q G G F++ +
Sbjct: 70 QAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 147 RAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTL 206
+ +D + I + DWY HTA R L LG D LING G T
Sbjct: 130 KDPHASRYDVDNESTVITLTDWY---HTAAR--LGPRFPLGA-DATLINGLGRSASTPTA 183
Query: 207 VPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDI 266
I V GK YR R+ ++ + F I HNL + E +G + S+ I
Sbjct: 184 A-----LAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQI 238
Query: 267 HVGQSYSFLVTMDQNASTDYYIVASARF--------------------VNESQWKRVTGV 306
Q YSF++ +Q +Y+I A+ F V E + T V
Sbjct: 239 FAAQRYSFVLNANQTVG-NYWIRANPNFGTVGFAGGINSAILRYQGAPVAEPTTTQTTSV 297
Query: 307 AILHYTNSKGKARGPLPEGP 326
L TN AR P+P P
Sbjct: 298 IPLIETNLHPLARMPVPGSP 317
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 126/524 (24%), Positives = 196/524 (37%), Gaps = 58/524 (11%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWS 85
D + P G + + G FPGP I N+L E + IHW
Sbjct: 8 DLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWH 67
Query: 86 GIQQRRSSWQDG-LLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q+ ++W DG T CPI +++Y F V G+++Y L Q G G F++
Sbjct: 68 GEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVV 127
Query: 145 NNRAIIPIPFDTPDGDITIL-IGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYN 203
+ D D TI+ + DWY L K + AG + D LI+G G N
Sbjct: 128 YDPNDPDANLYDVDDDTTIITLADWYH----VLAKEMGAGGAI-TADSTLIDGLGRTHVN 182
Query: 204 TTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTS 263
VP I V GK YR+R+ ++ + +F I H++ + ET+G + +
Sbjct: 183 VAAVP----LSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDE 238
Query: 264 LDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLP 323
+ I Q YSF++ +Q +Y+I A+ E + AIL Y G
Sbjct: 239 IQIFAAQRYSFVLNANQPVG-NYWIRANPNSGGEG-FDGGINSAILRY-------DGATT 289
Query: 324 EGPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGK 383
P + + +S +G NP ++N++ + N
Sbjct: 290 ADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNF-------- 341
Query: 384 RRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPRMETSVINGTYRGFMEVI 443
++G+SF P+ P+ L A L P+ V P T +E+
Sbjct: 342 ---VINGVSFTPPTVPVLLQICSGANTAADL-LPSGSVISLPSNST----------IEIA 387
Query: 444 LQNNDTKM-HAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYP-GAWTAIL 501
L H +H+ G+ F V E NS Y+ D I R + G I
Sbjct: 388 LPAGAAGGPHPFHLHGHDFAV-----SESASNSTSNYD--DPIWRDVVSIGGVGDNVTIR 440
Query: 502 VSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPD 545
DN G W L +D W+L + + P+P+
Sbjct: 441 FCTDNPGPWFLHCH-ID-WHLDAGFAIVFAEDIPNTASANPVPE 482
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 120/279 (43%), Gaps = 31/279 (11%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWS 85
D ++ SP G ++ + +NG P P I ++L + IHW
Sbjct: 7 DLTLTNAQVSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G Q+ ++W DG N CPI ++ Y FQV DQ G+F+Y L Q G G F++
Sbjct: 67 GFFQQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 145 ----NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMP---DGVLINGK 197
+ A + +D + D I + DWY H A A G P D LING
Sbjct: 127 YDPNDPHASL---YDIDNDDTVITLADWY---HVA------AKLGPRFPFGSDSTLINGL 174
Query: 198 GPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTV 257
G T + P D I+V GK YR R+ ++ + F I NH + + E + T
Sbjct: 175 G---RTTGIAPS--DLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQ 229
Query: 258 QQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVN 296
S+ I Q YSF++ Q +Y+I A+ F N
Sbjct: 230 PLEVDSIQIFAAQRYSFVLDASQPVD-NYWIRANPAFGN 267
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 126/294 (42%), Gaps = 22/294 (7%)
Query: 32 FEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDES-LLIHWSGIQQR 90
V T +P G + + NG PGP I N L+ + IHW GI+Q
Sbjct: 72 LSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQL 131
Query: 91 RSSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAI 149
S DG+ G T CPI P TY+FQV Q G+ +Y Q G FG IIN
Sbjct: 132 GSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIING--- 187
Query: 150 IPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMP---DGVLINGKGPYQYNTTL 206
P D + I + DW H ++ + D + LG P + L+NG + + +
Sbjct: 188 -PATADYDEDVGVIFLQDWA---HESVFEIWDTAR-LGAPPALENTLMNGTNTFDCSAST 242
Query: 207 VPD----GIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYT 262
P+ G +E V G YR+R+ NVGI + F I NH L + + V
Sbjct: 243 DPNCVGGGKKFELTFVE-GTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTD 301
Query: 263 SLDIHVGQSYSFLVTMDQNASTD-YYIVASARFVNESQWKRVTGVAILHYTNSK 315
+L I +GQ Y +V + NA+ D Y+I + + + IL Y +S
Sbjct: 302 TLLIGIGQRYDVIV--EANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS 353
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 126/294 (42%), Gaps = 22/294 (7%)
Query: 32 FEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDES-LLIHWSGIQQR 90
V T +P G + + NG PGP I N L+ + IHW GI+Q
Sbjct: 72 LSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQL 131
Query: 91 RSSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAI 149
S DG+ G T CPI P TY+FQV Q G+ +Y Q G FG IIN
Sbjct: 132 GSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIING--- 187
Query: 150 IPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMP---DGVLINGKGPYQYNTTL 206
P D + I + DW H ++ + D + LG P + L+NG + + +
Sbjct: 188 -PATADYDEDVGVIFLQDWA---HESVFEIWDTAR-LGAPPALENTLMNGTNTFDCSAST 242
Query: 207 VPD----GIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYT 262
P+ G +E V G YR+R+ NVGI + F I NH L + + V
Sbjct: 243 DPNCVGGGKKFELTFVE-GTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTD 301
Query: 263 SLDIHVGQSYSFLVTMDQNASTD-YYIVASARFVNESQWKRVTGVAILHYTNSK 315
+L I +GQ Y +V + NA+ D Y+I + + + IL Y +S
Sbjct: 302 TLLIGIGQRYDVIV--EANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS 353
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 113/270 (41%), Gaps = 25/270 (9%)
Query: 31 DFEVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLL-----IHWS 85
D +S +P G + + NG FPGP I + L + + IHW
Sbjct: 7 DLTISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWH 66
Query: 86 GIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144
G+ Q ++W DG N CPI ++ Y F V DQ G+F+Y L Q G G ++
Sbjct: 67 GLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVV 126
Query: 145 NNRA-IIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMP---DGVLINGKGPY 200
+ + +D D I + DWY HTA A G P D VLING G +
Sbjct: 127 YDPSDPYASMYDVDDDTTVITLSDWY---HTA------AKLGPAFPPNADSVLINGLGRF 177
Query: 201 QYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN 260
+ D I V K YR R+ ++ + F I HN+ + E +G
Sbjct: 178 AGG-----NASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLE 232
Query: 261 YTSLDIHVGQSYSFLVTMDQNASTDYYIVA 290
S+ I Q YSF++ Q+ +Y+I A
Sbjct: 233 VDSIQIFASQRYSFVLNATQSVD-NYWIRA 261
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 123/299 (41%), Gaps = 32/299 (10%)
Query: 43 GVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLD-----ESLLIHWSGIQQRRSSWQDG 97
G + + +NG PGP I N L +S +HW G Q+ ++W DG
Sbjct: 19 GHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADG 78
Query: 98 LLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII----NNRAIIPI 152
N CPI ++ Y F Q G+F+Y L Q G G F++ + A +
Sbjct: 79 PAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPNDPSANL-- 136
Query: 153 PFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGID 212
+D + + I + DWY HTA + + G D LING+G + + D
Sbjct: 137 -YDVDNLNTVITLTDWY---HTAAQ---NGPAKPGGADATLINGQGRGPSSPSA-----D 184
Query: 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSY 272
I V GK YR R+ + + F I H + + + + + I+ Q Y
Sbjct: 185 LAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIYAAQRY 244
Query: 273 SFLVTMDQNASTDYYIVASAR-----FVN--ESQWKRVTGVAILHYTNSKGKARGPLPE 324
SF++ +Q A +Y+I A+ F N S R +G A T S+ + PL +
Sbjct: 245 SFILNANQ-AVNNYWIRANPNQGNVGFTNGINSAILRYSGAAATQPTTSQTSSVQPLDQ 302
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 82 IHWSGIQQRRSSWQDGLLGTN-CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFG 140
IHW G Q ++ DG N CPI P ++ Y F V Q G+++Y L Q G G
Sbjct: 84 IHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRG 143
Query: 141 GFII--NNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKG 198
F++ N + + +D D I I DWY T L + D LING G
Sbjct: 144 AFVVYDPNDPHLSL-YDVDDASTVITIADWYHSLSTVLFPNPNKAPPAP--DTTLINGLG 200
Query: 199 PYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQ 258
N P + V GK YR R+ + + F I H + + E +G
Sbjct: 201 RNSAN----PSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQP 256
Query: 259 QNYTSLDIHVGQSYSFLVTMDQNASTDYYIVAS 291
SL I GQ YS +V +Q A +Y+I A+
Sbjct: 257 LTVDSLTIFAGQRYSVVVEANQ-AVGNYWIRAN 288
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 16/244 (6%)
Query: 48 VIAINGKFPGPTIXXXXXXXXXXXXRNKLDES-LLIHWSGIQQRRSSWQDGL-LGTNCPI 105
VI NG+FP P I N ++ + +H+ G+ Q ++ DG+ T CPI
Sbjct: 24 VITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPI 83
Query: 106 PPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILI 165
P Y F V VG+++Y Q G G FII + + P+D D ++++ +
Sbjct: 84 APGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSF---PYDY-DEELSLSL 139
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
+WY T L K+ + + N G L+ + T EV P TY
Sbjct: 140 SEWYHDLVTDLTKSFMS----------VYNPTGAEPIPQNLIVNNTMNLTWEVQPDTTYL 189
Query: 226 IRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTD 285
+R+ NVG S F I++H + + E +G T + L I V Q Y+ LV + +
Sbjct: 190 LRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKN 249
Query: 286 YYIV 289
+ I+
Sbjct: 250 FAIM 253
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 105/250 (42%), Gaps = 22/250 (8%)
Query: 44 VPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKL-DESLLIHWSGIQQRRSSWQDGLLG-T 101
V ++V+ ING GP I N L IHW GI Q+ ++ DG G T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVT 112
Query: 102 NCPIPPKWNW-TYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGD 160
CPIPPK TY+++ + Q G+ +Y Q +G G IN A +P D D
Sbjct: 113 ECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY-----DID 166
Query: 161 ITIL-IGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGID--YETIE 217
+ + I D+Y R L D VLING T + P+ + Y +
Sbjct: 167 LGVFPITDYYYRAADDLVH-FTQNNAPPFSDNVLING-------TAVNPNTGEGQYANVT 218
Query: 218 VHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVT 277
+ PGK +R+R+ N + NH + + + SL + VGQ Y V
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYD--VV 276
Query: 278 MDQNASTDYY 287
+D + + D Y
Sbjct: 277 IDASRAPDNY 286
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 105/250 (42%), Gaps = 22/250 (8%)
Query: 44 VPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKL-DESLLIHWSGIQQRRSSWQDGLLG-T 101
V ++V+ ING GP I N L IHW GI Q+ ++ DG G T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVT 112
Query: 102 NCPIPPKWNW-TYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGD 160
CPIPPK TY+++ + Q G+ +Y Q +G G IN A +P D D
Sbjct: 113 ECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY-----DID 166
Query: 161 ITIL-IGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGID--YETIE 217
+ + I D+Y R L D VLING T + P+ + Y +
Sbjct: 167 LGVFPITDYYYRAADDLVH-FTQNNAPPFSDNVLING-------TAVNPNTGEGQYANVT 218
Query: 218 VHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVT 277
+ PGK +R+R+ N + NH + + + SL + VGQ Y V
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYD--VV 276
Query: 278 MDQNASTDYY 287
+D + + D Y
Sbjct: 277 IDASRAPDNY 286
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 105/250 (42%), Gaps = 22/250 (8%)
Query: 44 VPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKL-DESLLIHWSGIQQRRSSWQDGLLG-T 101
V ++V+ ING GP I N L IHW GI Q+ ++ DG G T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVT 112
Query: 102 NCPIPPKWNW-TYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGD 160
CPIPPK TY+++ + Q G+ +Y Q +G G IN A +P D D
Sbjct: 113 ECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY-----DID 166
Query: 161 ITIL-IGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGID--YETIE 217
+ + I D+Y R L D VLING T + P+ + Y +
Sbjct: 167 LGVFPITDYYYRAADDLVH-FTQNNAPPFSDNVLING-------TAVNPNTGEGQYANVT 218
Query: 218 VHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVT 277
+ PGK +R+R+ N + NH + + + SL + VGQ Y V
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYD--VV 276
Query: 278 MDQNASTDYY 287
+D + + D Y
Sbjct: 277 IDASRAPDNY 286
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 107/258 (41%), Gaps = 31/258 (12%)
Query: 41 PLGVPQQVIA-INGKFPGPTIXXXXXXXXXXXXRNKLDES-LLIHWSGIQQRRSSWQDGL 98
P GV + V+ +N K GPTI N L + +HW G++Q + + DG
Sbjct: 90 PDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGA 149
Query: 99 LG-TNCPIPPKWNW-TYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDT 156
G T CPIPPK TY+F+ Q G+ +Y Q +G G I+ A +P+D
Sbjct: 150 NGVTECPIPPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQIDGPA--SLPYDI 206
Query: 157 PDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQ-------YNTTLVPD 209
G ++ D+Y R+ L G D VL NG + YN TL P
Sbjct: 207 DLGVFPLM--DYYYRSADELVH-FTQSNGAPPSDNVLFNGTARHPETGAGQWYNVTLTP- 262
Query: 210 GIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVG 269
GK +R+R+ N + HN+ + T+ +SL + VG
Sbjct: 263 -----------GKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVG 311
Query: 270 QSYSFLVTMDQNASTDYY 287
Q Y VT+D N+ Y
Sbjct: 312 QRYD--VTIDANSPVGNY 327
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 38/257 (14%)
Query: 38 TASPLGVPQQ---VIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSW 94
T +PL + Q ++ G FPGPT+ N+L E +HW G+
Sbjct: 24 TPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPI-SPKV 82
Query: 95 QDGLLGTNCPIPPKWNWTYQFQV-KDQVGSFFYFPSLHFQRASGGFGGF---IINNRAII 150
D L IPP +WTY+F V K+ G+F+Y P LH + A F G ++ ++
Sbjct: 83 DDPFLE----IPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLD 138
Query: 151 PIPFDTPDGDITILIGDWYTRN-----HTALRKTLDAGKGLGMPDGVLINGKGPYQYNTT 205
IP + +++ D + HT + ++ +G D VL+NG T
Sbjct: 139 AIPELREAEEHLLVLKDLALQGGRPAPHTPM-DWMNGKEG----DLVLVNGA----LRPT 189
Query: 206 LVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQ-NYTSL 264
LV T R+R+ N + +Q+H L L +G + + + L
Sbjct: 190 LVAQ-----------KATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSEL 238
Query: 265 DIHVGQSYSFLVTMDQN 281
+ G+ LV + +
Sbjct: 239 LLAPGERAEVLVRLRKE 255
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 30/218 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG P P I +NKL E+ IHW G+ QDG + PI
Sbjct: 76 NGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPV--PPDQDG--SPHDPILAGEER 131
Query: 112 TYQFQV-KDQVGSFFYFPSLHFQRASGGF----GGFIINNRAIIPIPFDTPDGDITILIG 166
Y+F++ +D G+++Y P H+ + F G F+I + D I+ L
Sbjct: 132 IYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRL 191
Query: 167 DWYTR-NHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + + L L+ +G + VLING Q+ ++ R
Sbjct: 192 DENAQIPNNNLNDWLNGREG----EFVLING----QFKP------------KIKLATNER 231
Query: 226 IRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTS 263
IR++N + LN RIQ +L T+G + Y
Sbjct: 232 IRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKE 269
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 47 QVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGL-LGTNCPI 105
A NG+ P P I N IHW G+ QR + DG+ T I
Sbjct: 23 HTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAI 82
Query: 106 PPKWNWTYQFQVKDQVGSFFYFPSLHFQR---ASGGFGGFIINNRAIIPIPFDTPDGDIT 162
P +TY+F+ + G+ +Y ++ G +G I+ + +PI T D
Sbjct: 83 EPGDTFTYKFKA-EPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIE-KTVTKDYI 140
Query: 163 ILIGDWYT 170
+++ DW +
Sbjct: 141 LMLSDWVS 148
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 33 EVSYITASPLGVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRS 92
E +YI A+ G + + PTI +NKL E ++HW G
Sbjct: 19 EATYIEATASGYMAEGVL------NPTIILRRGQRVDMTLKNKLTEPTIVHWHGFD---V 69
Query: 93 SWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH 131
+W + + I P ++ Y F V ++ G++ Y P H
Sbjct: 70 NWHND-AHPSFAITPGESYNYSFDVVNRAGTYLYHPHPH 107
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 40/288 (13%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNW 111
NG GP + N+L E +HW G++ DG G IPP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 112 TYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFDTPDG--DITILI 165
+ V + ++ P H Q A G G +I + I+ + G D+ +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 166 GDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYR 225
D + LD V+ G + TL+ +G Y P R
Sbjct: 158 QDKKFSADGQIDYQLD----------VMTAAVG--WFGDTLLTNGAIYPQ-HAAPRGWLR 204
Query: 226 IRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNAS 283
+R+ N + SLNF ++ L +A G + L + +G+ + LV ++ N
Sbjct: 205 LRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP 264
Query: 284 TDYYIV-------ASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE 324
D + A A F R+ +AI A G LP+
Sbjct: 265 FDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI--------SASGALPD 304
>pdb|1WQL|B Chain B, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 186
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 314 SKGKARGPLPEGPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRY------------ 361
S+ KA +P G N FD+T+ +AR IR VS +P R+
Sbjct: 64 SRNKAMEYVPPGGNAHFDETYESMRAR-IRARVSGLNWTEDPPSRSRHIVSNVIVRETES 122
Query: 362 -GSINVTEVYVL-RNKPPEMID---GKRRATLSGIS 392
G++ V+ ++ RN+ M D G+RR L +S
Sbjct: 123 AGTLEVSSAFLCYRNRLERMTDIYVGERRDILLRVS 158
>pdb|3KYH|A Chain A, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|B Chain B, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 310
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 157 PDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYN 203
PD D+T + DW ++ L + L M GV+I+ KGP + N
Sbjct: 38 PDDDLTKSVQDWVYATIYSIAPELRSFIELEMKFGVIIDAKGPDRVN 84
>pdb|1D8H|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8I|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion
Length = 311
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 157 PDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYN 203
PD D+T + DW ++ L + L M GV+I+ KGP + N
Sbjct: 39 PDDDLTKSVQDWVYATIYSIAPELRSFIELEMKFGVIIDAKGPDRVN 85
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 30/264 (11%)
Query: 43 GVPQQVIAINGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTN 102
G V ING++ GPTI N+L E++ + +G+Q L+G
Sbjct: 35 GTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQV-----PGPLMGGP 89
Query: 103 CP-IPPKWNWTYQFQVKDQVGSFFYF---PSLHFQRASGGFGGFIINNRAI---IPIPFD 155
+ P +W ++ + +Y P+ Q+ G G + + +PIP
Sbjct: 90 ARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNH 149
Query: 156 TPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYET 215
D ++I D K LD G P+ G G + +T LV +G+
Sbjct: 150 YGVDDFPVIIQD----------KRLD---NFGTPE-YNEPGSGGFVGDTLLV-NGVQSPY 194
Query: 216 IEVHPGKTYRIRVHNVGISTSLNFRIQNHNLL--LAETEGSYTVQQNYTSLDIHVGQSYS 273
+EV G R+R+ N S ++ + L ++ +G + L + G+
Sbjct: 195 VEVSRGWV-RLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERRE 253
Query: 274 FLVTMDQNASTDYYIVASARFVNE 297
LV M +A V+
Sbjct: 254 ILVDMSNGDEVSITCGEAASIVDR 277
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 52 NGKFPGPTIXXXXXXXXXXXXRNKLDESLLIHWSGIQQRRSSWQDGLLGTNC-PIPPKWN 110
NG+ PGPT+ N IH+ G+ + + DG G I P +
Sbjct: 60 NGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHR---ATMDGTPGIGAGSIAPGQS 116
Query: 111 WTYQFQVKDQVGSFFYF---PSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGD 167
+TY+F G+ Y L A G +GGFI+ + P P D +++ +
Sbjct: 117 FTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP-----PADDEMVMVMN 170
Query: 168 WYTRN 172
Y +
Sbjct: 171 GYNTD 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,400,987
Number of Sequences: 62578
Number of extensions: 822052
Number of successful extensions: 1825
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 84
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)