Query 007735
Match_columns 591
No_of_seqs 282 out of 2174
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00044 multi-copper oxidase- 100.0 5E-119 1E-123 976.9 61.9 554 13-566 13-570 (596)
2 PLN02991 oxidoreductase 100.0 4E-115 9E-120 941.8 60.9 523 11-555 12-535 (543)
3 PLN02354 copper ion binding / 100.0 7E-114 1E-118 938.1 60.6 522 24-561 24-549 (552)
4 PLN02835 oxidoreductase 100.0 9E-114 2E-118 936.0 60.7 523 11-555 13-536 (539)
5 PLN02792 oxidoreductase 100.0 2E-113 5E-118 929.8 59.4 516 22-556 11-529 (536)
6 KOG1263 Multicopper oxidases [ 100.0 7E-113 2E-117 918.2 57.8 534 12-557 13-562 (563)
7 PLN02168 copper ion binding / 100.0 8E-112 2E-116 917.7 60.1 510 25-552 24-543 (545)
8 TIGR03389 laccase laccase, pla 100.0 2E-101 4E-106 847.2 59.0 510 26-550 2-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 4E-101 9E-106 843.7 58.1 509 25-556 21-567 (574)
10 PLN02604 oxidoreductase 100.0 1.6E-99 3E-104 833.2 60.2 528 1-554 2-565 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 3.2E-98 7E-103 820.7 56.9 502 27-551 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 4.5E-96 1E-100 801.4 54.3 489 29-534 10-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 5.2E-79 1.1E-83 665.9 49.1 430 28-531 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.5E-75 3.2E-80 634.4 44.7 441 27-531 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.9E-73 6.3E-78 611.6 43.5 404 29-533 47-470 (471)
16 COG2132 SufI Putative multicop 100.0 8.8E-59 1.9E-63 501.6 40.7 399 40-531 46-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 6.3E-48 1.4E-52 394.3 25.8 265 22-315 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 9E-37 2E-41 267.0 11.3 115 33-147 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 5.1E-30 1.1E-34 233.1 10.2 109 424-532 28-136 (138)
20 PF00394 Cu-oxidase: Multicopp 100.0 2.9E-28 6.2E-33 226.6 16.1 154 159-314 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 1.1E-18 2.3E-23 158.6 11.6 106 38-145 33-148 (148)
22 TIGR01480 copper_res_A copper- 99.6 2.2E-15 4.7E-20 165.9 12.2 100 44-145 483-587 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.5 7.2E-13 1.6E-17 136.1 21.7 244 189-531 47-296 (311)
24 TIGR03096 nitroso_cyanin nitro 99.4 4.2E-12 9.1E-17 111.6 11.7 100 18-132 15-122 (135)
25 PRK10965 multicopper oxidase; 99.2 7.1E-10 1.5E-14 121.5 18.8 230 46-293 212-509 (523)
26 PRK10883 FtsI repressor; Provi 99.1 2.7E-09 6E-14 115.8 18.3 222 44-293 207-454 (471)
27 TIGR03389 laccase laccase, pla 99.0 2.7E-08 6E-13 110.2 21.6 234 190-516 23-264 (539)
28 PLN02835 oxidoreductase 99.0 3.6E-08 7.8E-13 108.6 20.6 218 190-513 49-276 (539)
29 PLN02354 copper ion binding / 98.9 9.1E-08 2E-12 105.6 20.3 228 190-515 47-283 (552)
30 PLN02792 oxidoreductase 98.9 1.2E-07 2.5E-12 104.3 20.2 222 190-513 36-267 (536)
31 PLN02991 oxidoreductase 98.9 1.1E-07 2.3E-12 104.5 19.5 219 190-512 48-275 (543)
32 PLN02168 copper ion binding / 98.8 2.3E-07 4.9E-12 102.1 20.5 220 190-506 46-267 (545)
33 COG2132 SufI Putative multicop 98.8 1.2E-07 2.5E-12 103.3 17.2 232 43-294 186-436 (451)
34 PF07731 Cu-oxidase_2: Multico 98.8 6.5E-09 1.4E-13 94.2 6.1 89 57-146 33-136 (138)
35 PLN00044 multi-copper oxidase- 98.8 4.3E-07 9.2E-12 100.5 19.9 233 190-511 49-291 (596)
36 TIGR03390 ascorbOXfungal L-asc 98.8 6.2E-07 1.3E-11 99.3 20.8 236 190-515 28-282 (538)
37 PRK02710 plastocyanin; Provisi 98.7 2.2E-07 4.9E-12 81.7 13.1 74 57-145 46-119 (119)
38 TIGR03388 ascorbase L-ascorbat 98.6 2.7E-06 5.8E-11 94.5 21.6 256 190-515 21-280 (541)
39 PLN02604 oxidoreductase 98.6 4.9E-08 1.1E-12 108.6 7.4 89 432-534 57-146 (566)
40 PLN02191 L-ascorbate oxidase 98.5 3.1E-06 6.7E-11 94.2 18.8 248 190-513 43-301 (574)
41 PF07732 Cu-oxidase_3: Multico 98.5 2.1E-07 4.6E-12 81.5 6.9 90 430-533 26-116 (117)
42 PF13473 Cupredoxin_1: Cupredo 98.3 1.3E-06 2.8E-11 75.1 7.3 74 54-144 31-104 (104)
43 KOG1263 Multicopper oxidases [ 98.3 7.4E-05 1.6E-09 82.2 20.7 223 190-509 48-279 (563)
44 TIGR02656 cyanin_plasto plasto 98.2 6.5E-06 1.4E-10 70.0 8.2 84 55-145 14-99 (99)
45 PF00394 Cu-oxidase: Multicopp 98.0 2.3E-05 4.9E-10 72.8 9.2 93 429-532 59-157 (159)
46 PRK02888 nitrous-oxide reducta 97.8 8.9E-05 1.9E-09 81.3 9.7 97 39-147 534-635 (635)
47 PF00127 Copper-bind: Copper b 97.8 3.4E-05 7.3E-10 65.6 5.0 79 55-145 14-99 (99)
48 TIGR02657 amicyanin amicyanin. 97.6 0.00035 7.6E-09 57.2 8.0 75 55-145 8-83 (83)
49 TIGR03095 rusti_cyanin rusticy 97.5 0.00028 6E-09 64.4 7.7 89 430-530 52-147 (148)
50 TIGR02656 cyanin_plasto plasto 97.4 0.00043 9.4E-09 58.8 7.0 83 430-531 17-99 (99)
51 PF06525 SoxE: Sulfocyanin (So 97.4 0.0011 2.5E-08 62.1 10.1 104 48-154 75-193 (196)
52 TIGR02375 pseudoazurin pseudoa 97.4 0.00079 1.7E-08 58.6 8.2 75 57-147 14-89 (116)
53 TIGR03094 sulfo_cyanin sulfocy 97.2 0.0029 6.3E-08 58.1 10.4 96 49-148 75-188 (195)
54 TIGR03096 nitroso_cyanin nitro 97.2 0.0014 3E-08 58.1 7.3 59 431-516 62-120 (135)
55 COG3794 PetE Plastocyanin [Ene 96.9 0.0051 1.1E-07 54.2 8.1 75 58-146 54-128 (128)
56 PF13473 Cupredoxin_1: Cupredo 96.9 0.0042 9E-08 53.2 7.6 69 430-529 35-103 (104)
57 TIGR03102 halo_cynanin halocya 96.4 0.018 3.8E-07 50.1 8.5 76 55-145 39-115 (115)
58 PRK02888 nitrous-oxide reducta 96.2 0.021 4.5E-07 63.2 9.1 77 429-532 554-634 (635)
59 PF00127 Copper-bind: Copper b 96.0 0.041 9E-07 46.5 8.6 82 430-531 17-99 (99)
60 PRK02710 plastocyanin; Provisi 96.0 0.026 5.7E-07 49.5 7.4 72 431-531 48-119 (119)
61 TIGR02375 pseudoazurin pseudoa 94.0 0.18 4E-06 43.9 6.7 77 430-535 15-91 (116)
62 COG4454 Uncharacterized copper 93.9 0.5 1.1E-05 42.7 9.4 89 54-146 59-158 (158)
63 TIGR02657 amicyanin amicyanin. 93.7 0.24 5.2E-06 40.3 6.6 72 430-530 11-82 (83)
64 PRK10378 inactive ferrous ion 93.0 0.64 1.4E-05 48.9 10.0 78 54-148 40-119 (375)
65 TIGR03102 halo_cynanin halocya 92.7 0.69 1.5E-05 40.2 8.2 74 430-531 42-115 (115)
66 PF00116 COX2: Cytochrome C ox 92.6 0.63 1.4E-05 40.9 7.9 74 57-144 45-119 (120)
67 PF00116 COX2: Cytochrome C ox 92.5 1.2 2.5E-05 39.2 9.5 74 430-531 46-120 (120)
68 COG4454 Uncharacterized copper 91.4 0.71 1.5E-05 41.8 6.9 93 432-531 65-157 (158)
69 TIGR02866 CoxB cytochrome c ox 90.6 0.83 1.8E-05 44.0 7.2 78 430-535 117-195 (201)
70 TIGR02695 azurin azurin. Azuri 90.2 1.3 2.8E-05 38.8 7.2 86 57-143 15-124 (125)
71 COG3794 PetE Plastocyanin [Ene 86.3 3.1 6.7E-05 36.8 7.2 73 431-531 55-127 (128)
72 COG1622 CyoA Heme/copper-type 85.2 3 6.4E-05 41.5 7.3 79 429-535 136-215 (247)
73 TIGR02866 CoxB cytochrome c ox 85.0 6 0.00013 38.1 9.3 77 57-147 116-193 (201)
74 PF06525 SoxE: Sulfocyanin (So 82.0 38 0.00083 32.2 12.8 95 432-533 88-188 (196)
75 COG1622 CyoA Heme/copper-type 80.8 5.4 0.00012 39.6 7.2 78 57-148 136-214 (247)
76 TIGR02695 azurin azurin. Azuri 80.7 12 0.00025 32.9 8.3 80 213-292 15-112 (125)
77 PF12690 BsuPI: Intracellular 79.3 18 0.00039 29.3 8.6 65 224-290 4-82 (82)
78 PF12690 BsuPI: Intracellular 77.1 5.7 0.00012 32.3 5.1 57 59-126 17-80 (82)
79 TIGR03079 CH4_NH3mon_ox_B meth 76.7 21 0.00045 37.1 9.9 67 47-119 271-354 (399)
80 MTH00140 COX2 cytochrome c oxi 73.7 11 0.00024 37.0 7.1 78 430-535 140-218 (228)
81 TIGR03094 sulfo_cyanin sulfocy 72.6 55 0.0012 30.7 10.7 96 431-533 86-187 (195)
82 PTZ00047 cytochrome c oxidase 68.2 20 0.00043 33.0 6.9 77 431-535 74-151 (162)
83 COG4263 NosZ Nitrous oxide red 67.3 7.9 0.00017 41.1 4.6 77 59-145 559-636 (637)
84 MTH00047 COX2 cytochrome c oxi 64.9 38 0.00083 32.4 8.5 77 430-534 116-193 (194)
85 COG2967 ApaG Uncharacterized p 64.6 7.5 0.00016 33.5 3.2 54 70-123 34-95 (126)
86 TIGR01433 CyoA cytochrome o ub 61.9 20 0.00044 35.1 6.2 78 430-535 139-217 (226)
87 MTH00129 COX2 cytochrome c oxi 61.0 24 0.00053 34.7 6.6 78 430-535 140-218 (230)
88 PF07705 CARDB: CARDB; InterP 57.2 1E+02 0.0023 25.0 9.6 68 216-293 13-84 (101)
89 MTH00008 COX2 cytochrome c oxi 56.5 37 0.00081 33.3 7.1 78 430-535 140-218 (228)
90 MTH00185 COX2 cytochrome c oxi 56.4 40 0.00087 33.2 7.3 77 430-534 140-217 (230)
91 MTH00098 COX2 cytochrome c oxi 55.7 40 0.00087 33.1 7.1 78 430-535 140-218 (227)
92 TIGR01432 QOXA cytochrome aa3 53.3 32 0.00069 33.5 6.0 78 430-535 130-208 (217)
93 PRK05461 apaG CO2+/MG2+ efflux 51.6 19 0.00041 31.9 3.7 20 95-114 66-85 (127)
94 PF10633 NPCBM_assoc: NPCBM-as 51.1 81 0.0018 24.9 7.1 65 218-292 1-75 (78)
95 MTH00117 COX2 cytochrome c oxi 51.0 53 0.0011 32.3 7.1 78 430-535 140-218 (227)
96 PF04151 PPC: Bacterial pre-pe 47.3 87 0.0019 24.1 6.6 20 214-233 5-24 (70)
97 MTH00023 COX2 cytochrome c oxi 46.3 72 0.0016 31.6 7.3 78 430-535 151-229 (240)
98 PF05938 Self-incomp_S1: Plant 45.5 84 0.0018 26.7 6.8 70 69-147 2-71 (110)
99 MTH00076 COX2 cytochrome c oxi 43.7 71 0.0015 31.4 6.8 78 430-535 140-218 (228)
100 KOG4063 Major epididymal secre 41.6 2.4E+02 0.0051 25.7 8.9 18 101-118 106-123 (158)
101 PF01835 A2M_N: MG2 domain; I 41.3 65 0.0014 26.6 5.4 72 218-293 11-86 (99)
102 PF05506 DUF756: Domain of unk 41.0 1E+02 0.0022 25.2 6.3 63 57-127 8-73 (89)
103 PF07691 PA14: PA14 domain; I 40.6 1.5E+02 0.0033 26.0 8.1 64 215-283 53-123 (145)
104 PF04744 Monooxygenase_B: Mono 39.8 41 0.00088 35.1 4.4 77 67-143 266-377 (381)
105 PF14344 DUF4397: Domain of un 39.6 2.4E+02 0.0053 24.1 10.8 21 225-245 3-24 (122)
106 MTH00038 COX2 cytochrome c oxi 39.4 98 0.0021 30.4 7.0 78 430-535 140-218 (229)
107 MTH00051 COX2 cytochrome c oxi 38.8 1E+02 0.0022 30.4 7.0 78 430-535 144-222 (234)
108 PF11614 FixG_C: IG-like fold 37.4 1.5E+02 0.0031 25.5 7.1 48 223-279 34-83 (118)
109 PF11142 DUF2917: Protein of u 35.6 1E+02 0.0022 23.6 5.1 45 216-272 2-46 (63)
110 COG1188 Ribosome-associated he 35.3 29 0.00063 29.2 2.1 30 48-77 35-64 (100)
111 smart00758 PA14 domain in bact 34.8 2.5E+02 0.0054 24.5 8.4 64 215-283 51-115 (136)
112 cd01272 FE65_N Fe65 Phosphotyr 34.7 1E+02 0.0022 27.3 5.5 39 450-516 74-112 (138)
113 PF14874 PapD-like: Flagellar- 31.6 2.9E+02 0.0064 22.7 8.4 56 217-279 15-72 (102)
114 PF04379 DUF525: Protein of un 31.1 1.3E+02 0.0029 24.8 5.4 49 223-274 15-67 (90)
115 PRK10525 cytochrome o ubiquino 30.2 1.1E+02 0.0023 31.7 5.7 78 430-535 151-230 (315)
116 COG3354 FlaG Putative archaeal 30.1 3E+02 0.0065 24.9 7.6 54 222-279 70-131 (154)
117 PRK10378 inactive ferrous ion 29.8 2.5E+02 0.0055 29.8 8.5 64 211-291 41-104 (375)
118 PF14392 zf-CCHC_4: Zinc knuck 28.4 1.2E+02 0.0026 21.8 4.2 41 481-521 3-44 (49)
119 cd00918 Der-p2_like Several gr 28.0 2.1E+02 0.0046 24.9 6.5 62 57-118 19-88 (120)
120 MTH00168 COX2 cytochrome c oxi 26.9 1.7E+02 0.0038 28.6 6.4 77 430-534 140-217 (225)
121 MTH00154 COX2 cytochrome c oxi 26.8 2.1E+02 0.0046 28.1 7.0 78 430-535 140-218 (227)
122 MTH00027 COX2 cytochrome c oxi 25.0 1.9E+02 0.0041 29.1 6.3 78 430-535 174-252 (262)
123 COG1470 Predicted membrane pro 24.9 3.3E+02 0.0071 29.7 8.2 73 214-294 389-469 (513)
124 PF10989 DUF2808: Protein of u 24.8 85 0.0018 28.4 3.6 29 102-130 96-127 (146)
125 PRK05461 apaG CO2+/MG2+ efflux 24.7 1.8E+02 0.004 25.7 5.5 49 223-274 32-84 (127)
126 MTH00139 COX2 cytochrome c oxi 24.5 2.2E+02 0.0047 27.9 6.6 78 430-535 140-218 (226)
127 PF14481 Fimbrial_PilY2: Type 24.1 42 0.0009 28.4 1.2 16 56-71 63-79 (118)
128 cd00916 Npc2_like Niemann-Pick 23.8 2.7E+02 0.0059 24.2 6.5 60 59-118 23-92 (123)
129 PF14451 Ub-Mut7C: Mut7-C ubiq 22.1 77 0.0017 25.6 2.4 31 41-71 41-74 (81)
130 MTH00080 COX2 cytochrome c oxi 21.7 2.7E+02 0.0059 27.4 6.6 78 430-535 143-221 (231)
131 MTH00047 COX2 cytochrome c oxi 21.6 5E+02 0.011 24.8 8.2 76 59-148 117-193 (194)
132 PHA02844 putative transmembran 20.8 1.1E+02 0.0024 24.1 2.9 24 567-590 43-66 (75)
133 cd00917 PG-PI_TP The phosphati 20.3 4.3E+02 0.0094 22.9 7.1 75 30-117 10-90 (122)
134 MTH00140 COX2 cytochrome c oxi 20.2 3.5E+02 0.0076 26.5 7.1 77 57-147 139-216 (228)
135 PRK03999 translation initiatio 20.2 6E+02 0.013 22.4 7.9 40 189-242 14-60 (129)
136 COG4263 NosZ Nitrous oxide red 20.2 1.9E+02 0.0041 31.2 5.3 79 41-129 529-609 (637)
137 TIGR02988 YaaA_near_RecF S4 do 20.1 69 0.0015 23.9 1.7 23 48-70 35-58 (59)
No 1
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=5.2e-119 Score=976.88 Aligned_cols=554 Identities=68% Similarity=1.195 Sum_probs=458.6
Q ss_pred HHHHHhhhcccCCceEEEEEEEEEEEecCCC--eeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCC
Q 007735 13 HIALLASLCSAADLFVYFDFEVSYITASPLG--VPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQR 90 (591)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~ 90 (591)
+++++-+.+.|++++++|+|+|++..++||| ..+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~ 92 (596)
T PLN00044 13 ALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQR 92 (596)
T ss_pred HHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCC
Confidence 3434445566788899999999999999999 55799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCC-CcceEEecccc
Q 007735 91 RSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPD-GDITILIGDWY 169 (591)
Q Consensus 91 ~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d-~e~~l~l~d~~ 169 (591)
+++|+||+++|||||+||++|+|+|++++|+||||||||++.|+++||+|+|||++++..+.||..++ +|++|+|+|||
T Consensus 93 ~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~ 172 (596)
T PLN00044 93 KSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWY 172 (596)
T ss_pred CCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccc
Confidence 99999999889999999999999999988999999999999999999999999999877666775444 79999999999
Q ss_pred cCchHHHHHHhhcCCCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEE
Q 007735 170 TRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA 249 (591)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 249 (591)
+++...+...+..|...+.++.++|||++.+.++|+........+.++|++||+|||||||++..+.+.|+|+||+|+||
T Consensus 173 ~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVI 252 (596)
T PLN00044 173 ARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLV 252 (596)
T ss_pred cCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEE
Confidence 99877766666666555678999999998876666643334456789999999999999999999999999999999999
Q ss_pred eecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCC
Q 007735 250 ETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDE 329 (591)
Q Consensus 250 a~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~ 329 (591)
|+||.+++|+.+++|.|++||||||+|+++++++++|||++...+.....+.+..+.|||+|.++....+.++|..|...
T Consensus 253 a~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~ 332 (596)
T PLN00044 253 EAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQ 332 (596)
T ss_pred EeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCccc
Confidence 99999999999999999999999999999987654899998764322111345678899999886532222334333211
Q ss_pred cCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhcccccc
Q 007735 330 FDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVK 409 (591)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~ 409 (591)
++..++.++.+.++++.......|.|+++.++...++.+.+.+........+|+.+|+|||++|..|++|+|++.+++++
T Consensus 333 ~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~ 412 (596)
T PLN00044 333 YDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVP 412 (596)
T ss_pred CCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCC
Confidence 13333444445555555544455666665555444554444333211112235789999999999999999988888888
Q ss_pred ccccCCCCCCCCCCCCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccce
Q 007735 410 GAYKLDFPTKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTT 489 (591)
Q Consensus 410 g~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDT 489 (591)
++|..++++.|........+.++.++++++|||+|+|.....||||||||+||||++|.|.|++.++..||++||++|||
T Consensus 413 gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdT 492 (596)
T PLN00044 413 GVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARST 492 (596)
T ss_pred CcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccce
Confidence 99987777766554455678999999999999999998778999999999999999999999987777899999999999
Q ss_pred EEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCCCC-CCCCCCCCCCcccccCcCCCCCCCcccccc
Q 007735 490 TQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEAT-NKTEFPIPDNALFCGALSHLQKPEDISAAT 566 (591)
Q Consensus 490 v~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~-~~~~~~~p~~~~~c~~~~~~~~~~~~~~~~ 566 (591)
+.|+++||++|||++||||+|+|||||+.||+.||++++.|.++.+. .+++.++|++.+.||..+++++.+.+.+..
T Consensus 493 v~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~~~~~~~~~ 570 (596)
T PLN00044 493 IQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQKEQSHRFQY 570 (596)
T ss_pred EEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999988764 556788999999999999988877766444
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=4e-115 Score=941.78 Aligned_cols=523 Identities=51% Similarity=0.937 Sum_probs=443.7
Q ss_pred HHHHHHHhhhcccCCceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCC
Q 007735 11 AIHIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQR 90 (591)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~ 90 (591)
++.+++|+++..|++++++|+|+|++..++|||+++++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~ 91 (543)
T PLN02991 12 ILGLLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNW 91 (543)
T ss_pred HHHHHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccC
Confidence 45566677777778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEeccccc
Q 007735 91 RSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYT 170 (591)
Q Consensus 91 ~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~ 170 (591)
+++||||+++|||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.|+..+|+|++++|+||++
T Consensus 92 ~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~ 171 (543)
T PLN02991 92 RNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYK 171 (543)
T ss_pred CCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceec
Confidence 99999999999999999999999999977999999999999999999999999999876667777778999999999999
Q ss_pred CchHHHHHHhhcCCCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEe
Q 007735 171 RNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAE 250 (591)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via 250 (591)
++...+...+..+...+.+|.+||||++. .+.++|++||+|||||||+|..+.+.|+|+||+|+|||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~~liNG~~~-------------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa 238 (543)
T PLN02991 172 TNHKDLRAQLDNGGKLPLPDGILINGRGS-------------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE 238 (543)
T ss_pred CCHHHHHHHhhcCCCCCCCCEEEEccCCC-------------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE
Confidence 98766655555565667899999999975 26899999999999999999999999999999999999
Q ss_pred ecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCc
Q 007735 251 TEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEF 330 (591)
Q Consensus 251 ~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~ 330 (591)
+||.+++|..++++.|++||||||+|+++++++ +|||++...+.. ......|||+|.++..+.+.+.|..|.
T Consensus 239 ~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~~p~~p~--- 310 (543)
T PLN02991 239 VEGTHTIQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGPIPDGPI--- 310 (543)
T ss_pred eCCccccceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCCCCCCCc---
Confidence 999999999999999999999999999999888 999999875442 235678999999875322223443332
Q ss_pred CcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccc
Q 007735 331 DKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKG 410 (591)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g 410 (591)
+..++.++....+.++.+....+.|..++.+...++++.+.+..... ..+|+.+|+|||++|..|++|+|++.+++++|
T Consensus 311 ~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g 389 (543)
T PLN02991 311 QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG-NIEGKQRYAVNSASFYPADTPLKLADYFKIAG 389 (543)
T ss_pred cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc-ccCceEEEEECCCccCCCCCChhhhhhhcccC
Confidence 22333333333344555444455565555544456666665554222 23467799999999999999999888877788
Q ss_pred cccCC-CCCCCCCCCCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccce
Q 007735 411 AYKLD-FPTKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTT 489 (591)
Q Consensus 411 ~~~~~-~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDT 489 (591)
+|+.+ +++.|..+.....++++.++++++|||+|+|.+...||||||||+||||++|.|.|++.+...||+.||++|||
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDT 469 (543)
T PLN02991 390 VYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCT 469 (543)
T ss_pred ccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccE
Confidence 88765 55555444444567888999999999999999888999999999999999999999877667899999999999
Q ss_pred EEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCCcccccCcCC
Q 007735 490 TQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSH 555 (591)
Q Consensus 490 v~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~ 555 (591)
+.||++||++|||++||||+|+|||||..|+.+||+++++|.++++..+++.++|++.+.||..++
T Consensus 470 v~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 470 VQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATG 535 (543)
T ss_pred EEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCCC
Confidence 999999999999999999999999999999999999999999888877777889999999987666
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=6.8e-114 Score=938.11 Aligned_cols=522 Identities=52% Similarity=0.962 Sum_probs=430.4
Q ss_pred CCceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCC
Q 007735 24 ADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNC 103 (591)
Q Consensus 24 ~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~ 103 (591)
++++++|+|+|++.+++|||+++++++||||+|||+||+++||+|+|+|+|+|+++++|||||++|++++||||+++|||
T Consensus 24 ~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc 103 (552)
T PLN02354 24 EDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC 103 (552)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhhcC
Q 007735 104 PIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAG 183 (591)
Q Consensus 104 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~ 183 (591)
||+||++|+|+|++.+|+||||||||.+.|+++||+|+|||++++..+.||+.+|+|++|+|+|||+++...+...+..+
T Consensus 104 pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 183 (552)
T PLN02354 104 PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLDSG 183 (552)
T ss_pred CCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHhcC
Confidence 99999999999998779999999999999999999999999998766678877789999999999999877776666666
Q ss_pred CCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeE
Q 007735 184 KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTS 263 (591)
Q Consensus 184 ~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~ 263 (591)
...+.++++||||+....| ....+.++|++||+|||||||+|....+.|+|+||+|+|||+||++++|..+++
T Consensus 184 ~~~~~~d~~liNG~~~~~~-------~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~ 256 (552)
T PLN02354 184 RTLGRPDGVLINGKSGKGD-------GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDS 256 (552)
T ss_pred CCCCCCCeEEEeCCcCCCC-------CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeE
Confidence 6566789999999975332 123588999999999999999999999999999999999999999999999999
Q ss_pred EEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcccccccccccc
Q 007735 264 LDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARSIR 343 (591)
Q Consensus 264 v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 343 (591)
|.|++||||||+|++++++| +|||++...+.. .+....|||+|.++..+.+.+.|..+. +..+..++...++
T Consensus 257 l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~~~~p~~~~---~~~~~~~~~~~~~ 328 (552)
T PLN02354 257 LDVHVGQCFSVLVTANQAPK-DYYMVASTRFLK----KVLTTTGIIRYEGGKGPASPELPEAPV---GWAWSLNQFRSFR 328 (552)
T ss_pred EEEccCceEEEEEECCCCCC-cEEEEEeccccC----CCccEEEEEEECCCCCCCCCCCCCCCc---ccccchhhhhhhh
Confidence 99999999999999999888 999999854332 236678999998865332222332221 1112233333343
Q ss_pred cccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccc-cccccCC-CCCCCC
Q 007735 344 WNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKV-KGAYKLD-FPTKPV 421 (591)
Q Consensus 344 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~-~g~~~~~-~~~~p~ 421 (591)
.++.+....|.+.....+...++++++.+..... ..+|..+|+|||++|..|++|+|++.++++ .|.++.+ ++..|.
T Consensus 329 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp 407 (552)
T PLN02354 329 WNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-KVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPP 407 (552)
T ss_pred hcccccccCCCCCCccccccccccceEEEecccc-cCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCc
Confidence 4444433344444333333345666666654322 234677899999999999999998776544 3666544 233221
Q ss_pred --CCCCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEE
Q 007735 422 --TGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTA 499 (591)
Q Consensus 422 --~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~ 499 (591)
......+++++.+++|++|||+|+|.+...||||||||+||||++|.|.|++.....||+.||++|||+.||++||++
T Consensus 408 ~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~v 487 (552)
T PLN02354 408 AKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAA 487 (552)
T ss_pred cccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEE
Confidence 122345678899999999999999998889999999999999999999998766668999999999999999999999
Q ss_pred EEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCCcccccCcCCCCCCCc
Q 007735 500 ILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSHLQKPED 561 (591)
Q Consensus 500 irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~~~~~~ 561 (591)
|||++||||+|+|||||+.|+++||+++++|.++.+..+++.++|++.+.|++.+++++++.
T Consensus 488 IRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~~~~~ 549 (552)
T PLN02354 488 ILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLPKPPP 549 (552)
T ss_pred EEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCCCCCCC
Confidence 99999999999999999999999999999998776655555678999999998888766554
No 4
>PLN02835 oxidoreductase
Probab=100.00 E-value=9.1e-114 Score=936.00 Aligned_cols=523 Identities=52% Similarity=0.946 Sum_probs=434.7
Q ss_pred HHHHHHHhhhcccCCceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCC
Q 007735 11 AIHIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQR 90 (591)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~ 90 (591)
+++++-..+...+.+++++|+|+|++...++||+++++|+|||++|||+||+++||+|+|+|+|+|+++++|||||++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~ 92 (539)
T PLN02835 13 VLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQR 92 (539)
T ss_pred HHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccC
Confidence 34444444555566689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEeccccc
Q 007735 91 RSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYT 170 (591)
Q Consensus 91 ~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~ 170 (591)
+++||||+++|||||+||++|+|+|++++|+||||||||++.|+++||+|+|||++++..+.||..+|+|++++++|||+
T Consensus 93 ~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~ 172 (539)
T PLN02835 93 KNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYK 172 (539)
T ss_pred CCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeecccc
Confidence 99999999999999999999999999877999999999999999999999999987665566777789999999999999
Q ss_pred CchHHHHHHhhcCCCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEe
Q 007735 171 RNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAE 250 (591)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via 250 (591)
++...+...+..+...+.++.+||||+.. +.++|++||+|||||||+|..+.+.|+|+||+|+|||
T Consensus 173 ~~~~~~~~~~~~g~~~~~~d~~liNG~~~--------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~ 238 (539)
T PLN02835 173 TSHKTLQQRLDSGKVLPFPDGVLINGQTQ--------------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE 238 (539)
T ss_pred CCHHHHHHHhhcCCCCCCCceEEEccccC--------------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE
Confidence 98777666666666677899999999986 7899999999999999999999999999999999999
Q ss_pred ecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCc
Q 007735 251 TEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEF 330 (591)
Q Consensus 251 ~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~ 330 (591)
+||.+++|..++++.|++||||||+|+++++++ +|||++...+.. .+....|||+|.++..+.+.++|..|..
T Consensus 239 ~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~~p~~-- 311 (539)
T PLN02835 239 VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPALPSG-- 311 (539)
T ss_pred ECCccCCCceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCCCCcc--
Confidence 999999999999999999999999999998888 999998653322 2356789999988654333344433321
Q ss_pred CcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccc
Q 007735 331 DKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKG 410 (591)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g 410 (591)
+..++...+....+.+.+....|.+.+++.+....+++++.+..... ..+|..+|+|||++|..|++|+|++.+++.++
T Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~ 390 (539)
T PLN02835 312 ELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-LINGKQRYAVNGVSYVNSDTPLKLADYFGIPG 390 (539)
T ss_pred ccccccchhhccccccCccccCCCCCccccccccCCCceEEEecccc-ccCCeEEEEECCcccCCCCCChhhhhhhcCCC
Confidence 11223333333344455444455554444333344566665543222 34567899999999999999998877766667
Q ss_pred cccCC-CCCCCCCCCCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccce
Q 007735 411 AYKLD-FPTKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTT 489 (591)
Q Consensus 411 ~~~~~-~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDT 489 (591)
.|+.+ +...+.....+.+++++.+++|++|||+|+|.+...||||||||+||||++|.|.|+......||+.||++|||
T Consensus 391 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDT 470 (539)
T PLN02835 391 VFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHT 470 (539)
T ss_pred ccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccce
Confidence 77644 22233332345678999999999999999999888999999999999999999999866556789999999999
Q ss_pred EEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCCcccccCcCC
Q 007735 490 TQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSH 555 (591)
Q Consensus 490 v~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~ 555 (591)
+.|+++||++|||+|||||+|+|||||++|+..||+++++|.++.+......++|++++.||..++
T Consensus 471 v~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 471 AQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred EEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 999999999999999999999999999999999999999999887766667889999999986655
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.2e-113 Score=929.80 Aligned_cols=516 Identities=50% Similarity=0.902 Sum_probs=436.9
Q ss_pred ccCCceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCC
Q 007735 22 SAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGT 101 (591)
Q Consensus 22 ~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~t 101 (591)
...+++++|+|+|++..++|||+++++++||||+|||+|++++||+|+|+|+|+|+++++|||||++|++++|+||+++|
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhh
Q 007735 102 NCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLD 181 (591)
Q Consensus 102 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 181 (591)
||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.||+.+|+|++++|+|||+++...+.+.++
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999998899999999999999999999999999876656677777899999999999998776666566
Q ss_pred cCCCCC-CCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeee
Q 007735 182 AGKGLG-MPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN 260 (591)
Q Consensus 182 ~~~~~~-~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~ 260 (591)
.+...+ .+|.+||||++..++ +.++|++||+|||||||+|..+.+.|+|+||+|+|||+||++++|..
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~~-----------~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~ 239 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSYV-----------YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSM 239 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCCc-----------ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcc
Confidence 554434 789999999986432 78999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCccccccccc
Q 007735 261 YTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQAR 340 (591)
Q Consensus 261 ~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 340 (591)
+++|.|++||||||+|+++++++ +|||++...+.+. +..+.|||+|.++..... +.|..|.. .+..++.+...
T Consensus 240 ~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~-~~p~~p~~-~~~~~~~~~~~ 312 (536)
T PLN02792 240 YTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFIAA----KVLVSSTLHYSNSKGHKI-IHARQPDP-DDLEWSIKQAQ 312 (536)
T ss_pred eeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccCCC----CCceEEEEEECCCCCCCC-CCCCCCCc-CCccccccchh
Confidence 99999999999999999998888 9999998765322 357789999988643211 11222211 13344444444
Q ss_pred ccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCC-CCCC
Q 007735 341 SIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLD-FPTK 419 (591)
Q Consensus 341 ~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~-~~~~ 419 (591)
.++.++.+..+.+.|++++++...++++++.+..... ..++..+|+|||++|..|++|+|++.++++.|+|+.+ +++.
T Consensus 313 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~ 391 (536)
T PLN02792 313 SIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAA-LVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDK 391 (536)
T ss_pred hhhhccCCCCCCCCCCcccccceeccceeEEeccccc-ccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccC
Confidence 4455555444556677666665556667766554322 2345678999999999999999998887777888764 6665
Q ss_pred CCCC-CCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEE
Q 007735 420 PVTG-PPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWT 498 (591)
Q Consensus 420 p~~~-~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~ 498 (591)
|..+ ....+++++.+++|++|||+|+|.+...||||||||+||||++|.|.|++.++..||+.||++||||.|+++||+
T Consensus 392 p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~ 471 (536)
T PLN02792 392 PRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWT 471 (536)
T ss_pred CcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEE
Confidence 5432 234568899999999999999998888999999999999999999999887777899999999999999999999
Q ss_pred EEEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCCcccccCcCCC
Q 007735 499 AILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSHL 556 (591)
Q Consensus 499 ~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~ 556 (591)
+|||++||||+|+||||++.|+.+||++++.|.++.+..+++.++|++.+.||..+++
T Consensus 472 aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~ 529 (536)
T PLN02792 472 AVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNK 529 (536)
T ss_pred EEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccCC
Confidence 9999999999999999999999999999999998887776778899999999977663
No 6
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.5e-113 Score=918.23 Aligned_cols=534 Identities=46% Similarity=0.762 Sum_probs=477.4
Q ss_pred HHHHHHhhhcccCCceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCC
Q 007735 12 IHIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRR 91 (591)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~ 91 (591)
+.++++..+..|+++++.|+|++++..++++|.+++++++||++|||+|+|++||+|+|+|.|+++++++|||||++|+.
T Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~k 92 (563)
T KOG1263|consen 13 CGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRK 92 (563)
T ss_pred HHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccC
Confidence 34444567778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccC
Q 007735 92 SSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTR 171 (591)
Q Consensus 92 ~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~ 171 (591)
++|+||+.+|||||+||++|+|+|++++|.||||||+|++.|+++|++|+|||+++...+.||+.+|+|++|+++|||++
T Consensus 93 n~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~ 172 (563)
T KOG1263|consen 93 NPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKN 172 (563)
T ss_pred CccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccc
Confidence 99999944599999999999999999989999999999999999999999999999988889989999999999999996
Q ss_pred -chHHHHHHhhcCCCCCC-CceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEE
Q 007735 172 -NHTALRKTLDAGKGLGM-PDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA 249 (591)
Q Consensus 172 -~~~~~~~~~~~~~~~~~-~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 249 (591)
++..+...++.+...+. +|.++|||+..+..+| .++++|++||+|||||+|+|....+.|+|+||+|+||
T Consensus 173 ~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~--------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvV 244 (563)
T KOG1263|consen 173 LNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC--------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVV 244 (563)
T ss_pred cCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc--------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEE
Confidence 88888888777665554 8999999999766655 3899999999999999999999999999999999999
Q ss_pred eecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCC----CC
Q 007735 250 ETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLP----EG 325 (591)
Q Consensus 250 a~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p----~~ 325 (591)
|+||.+++|..+++|.|+|||||||+|++++.++ +|+|+++.++.....+.+....++++|.++..+.+.+.+ .+
T Consensus 245 e~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~ 323 (563)
T KOG1263|consen 245 EVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLP 323 (563)
T ss_pred EecceEEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCC
Confidence 9999999999999999999999999999999999 999999998765432236889999999986555444322 12
Q ss_pred CCCCcCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhcc
Q 007735 326 PNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADW 405 (591)
Q Consensus 326 p~~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~ 405 (591)
|. ++..+++++.+.++..++...++|+|++++++...++.+.+.+.+... ..+++.+++||+++|..|++|.+++.+
T Consensus 324 ~~--~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~siN~isf~~P~tp~~l~~~ 400 (563)
T KOG1263|consen 324 PG--NDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-KNNGKLRASINNISFVTPKTPSLLAAY 400 (563)
T ss_pred cc--cCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC-CCCcEEEEEEcceEEECCCCchhhhhh
Confidence 22 266788899999999999999999999999999999999999887654 567899999999999999999999887
Q ss_pred ccc-cccccCCCCCCCC--CC--CCCcceEEEeccCCcEEEEEEecCCC---cceeeeecCceEEEEEEcCCCCCC--CC
Q 007735 406 FKV-KGAYKLDFPTKPV--TG--PPRMETSVINGTYRGFMEVILQNNDT---KMHAYHMSGYAFFVVGMDYGEWTD--NS 475 (591)
Q Consensus 406 ~~~-~g~~~~~~~~~p~--~~--~~~~~~~v~~~~~g~~ve~vl~N~~~---~~HPfHlHG~~F~Vv~~g~g~~~~--~~ 475 (591)
+.. ++.+..+++..|. .. +++.+++++.++++++|||+|+|.+. +.||||||||+|||||+|.|.|++ +.
T Consensus 401 ~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~ 480 (563)
T KOG1263|consen 401 FKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDP 480 (563)
T ss_pred hccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcCh
Confidence 764 4455556777772 21 24789999999999999999999874 478889999999999999999998 55
Q ss_pred CCCCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCCcccccCcCC
Q 007735 476 RGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSH 555 (591)
Q Consensus 476 ~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~ 555 (591)
+..||++||+.||||.||||||++|||+|||||+|+||||+++|++.||+++++|.++++..+++.++|++.+.||..++
T Consensus 481 ~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~ 560 (563)
T KOG1263|consen 481 RKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASG 560 (563)
T ss_pred hhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999888888999999999999876
Q ss_pred CC
Q 007735 556 LQ 557 (591)
Q Consensus 556 ~~ 557 (591)
..
T Consensus 561 ~~ 562 (563)
T KOG1263|consen 561 IP 562 (563)
T ss_pred cC
Confidence 54
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=8.2e-112 Score=917.74 Aligned_cols=510 Identities=48% Similarity=0.898 Sum_probs=417.8
Q ss_pred CceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCc
Q 007735 25 DLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCP 104 (591)
Q Consensus 25 ~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~ 104 (591)
+++++|+|+|++.+++|||+++++++|||++|||+||+++||+|+|+|+|+|+++|+|||||++|+.++||||+++||||
T Consensus 24 a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcp 103 (545)
T PLN02168 24 APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCP 103 (545)
T ss_pred ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhhcCC
Q 007735 105 IPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGK 184 (591)
Q Consensus 105 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~ 184 (591)
|+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.|++.+++|++|+|+||++.+...+...+..+.
T Consensus 104 I~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~ 183 (545)
T PLN02168 104 ILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGH 183 (545)
T ss_pred CCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcCC
Confidence 99999999999997789999999999999999999999999987766677777999999999999987655554455554
Q ss_pred CCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEE
Q 007735 185 GLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSL 264 (591)
Q Consensus 185 ~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v 264 (591)
..+.+|.+||||++.. .+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|
T Consensus 184 ~~~~~d~~liNG~~~~------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l 251 (545)
T PLN02168 184 SLPNPDGILFNGRGPE------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSL 251 (545)
T ss_pred CCCCCCEEEEeccCCC------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEE
Confidence 4567899999999742 2789999999999999999999999999999999999999999999999999
Q ss_pred EEccccEEEEEEEeCCCC-C--cceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcccccccccc
Q 007735 265 DIHVGQSYSFLVTMDQNA-S--TDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARS 341 (591)
Q Consensus 265 ~i~pGqR~dvlv~~~~~~-g--~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 341 (591)
.|++||||||+|++++++ | ++|||++...+... ...+.|||+|.++....+.|+|..|.. .+...+.+....
T Consensus 252 ~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~p~p~~p~~-~~~~~~~~~~~~ 326 (545)
T PLN02168 252 DIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA----YLGGVALIRYPNSPLDPVGPLPLAPAL-HDYFSSVEQALS 326 (545)
T ss_pred EEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC----CcceEEEEEECCCCCCCCCCCCCCCcc-cccccccchhhh
Confidence 999999999999998654 3 38999998754332 366789999987643222344433321 021222222223
Q ss_pred cccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCC-CCCCC
Q 007735 342 IRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLD-FPTKP 420 (591)
Q Consensus 342 ~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~-~~~~p 420 (591)
++.++.+..+.+.|..++.+...++++++.+.... ...+|..+|+|||++|..|++|++++.++++++.+..+ ++..|
T Consensus 327 ~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p 405 (545)
T PLN02168 327 IRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV-MLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYP 405 (545)
T ss_pred hhhcCCCCCCCCCCcccccccccccceeEEecccc-cccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCC
Confidence 33344443444555554444445566666655421 12356788999999999999999887766554444433 44444
Q ss_pred CCCCCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEE
Q 007735 421 VTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAI 500 (591)
Q Consensus 421 ~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~i 500 (591)
.+.....+++++.+++|++|||+|+|.....||||||||+||||++|.|.|++..+..||+.||++|||+.|+++||++|
T Consensus 406 ~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vI 485 (545)
T PLN02168 406 SNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAI 485 (545)
T ss_pred CcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEE
Confidence 33223345788999999999999999988899999999999999999999987666689999999999999999999999
Q ss_pred EEEeCCccceeeecccccchhccceEEEEEe-----cCCCC-CCCCCCCCCCcccccC
Q 007735 501 LVSLDNVGIWNLRTENLDSWYLGQETYVRVV-----NPEAT-NKTEFPIPDNALFCGA 552 (591)
Q Consensus 501 rf~adNpG~W~~HCHil~H~~~GM~~~~~V~-----~p~~~-~~~~~~~p~~~~~c~~ 552 (591)
||++||||+|+|||||..|||.||+++++|. +|++. .+++.++|++.++||.
T Consensus 486 RF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 486 LIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred EEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 9999999999999999999999999999985 44444 2445679999999974
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.7e-101 Score=847.25 Aligned_cols=510 Identities=28% Similarity=0.517 Sum_probs=392.7
Q ss_pred ceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCC-CCCc
Q 007735 26 LFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCP 104 (591)
Q Consensus 26 ~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~ 104 (591)
.+|+|+|+|++++++|||+++++|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|++++|+||+++ ||||
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHH-HHhhcC
Q 007735 105 IPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALR-KTLDAG 183 (591)
Q Consensus 105 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~-~~~~~~ 183 (591)
|+||++|+|+|++++|+||||||||...|+ +||+|+|||++++..+.|++.+|+|++|+|+||++++...+. .....+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999967999999999998776 599999999998766667777799999999999998765543 334445
Q ss_pred CCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeE
Q 007735 184 KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTS 263 (591)
Q Consensus 184 ~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~ 263 (591)
....++|.+||||+.....+|+. ...+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|+.+++
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~----~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~ 236 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSS----KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKT 236 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCC----CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCe
Confidence 44557799999999754333331 23578999999999999999999999999999999999999999999999999
Q ss_pred EEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcccccccccccc
Q 007735 264 LDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARSIR 343 (591)
Q Consensus 264 v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 343 (591)
+.|++||||||+|++++++| +|||++.....+.....+....|||+|.++........+..|... +..........+.
T Consensus 237 l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~l~ 314 (539)
T TIGR03389 237 IVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYN-DTAAATNFSNKLR 314 (539)
T ss_pred EEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCC-chhhhhHHHhhcc
Confidence 99999999999999998888 999999865332211234568899999875421111011111110 1000100000111
Q ss_pred cccccCCCCCCCCCCCCcCccceeEEEEEecCCC---------cccCC-eeEEEEcCeeccCCCCchhhhcccccccccc
Q 007735 344 WNVSASGARPNPQGSFRYGSINVTEVYVLRNKPP---------EMIDG-KRRATLSGISFVNPSTPIRLADWFKVKGAYK 413 (591)
Q Consensus 344 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~---------~~~~g-~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~ 413 (591)
....+..+...|. .+++++.+..... ...++ ..+|+|||++|..|++|++.+.+.++++.+.
T Consensus 315 ~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~ 386 (539)
T TIGR03389 315 SLNSAQYPANVPV--------TIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFT 386 (539)
T ss_pred cccccCCCCCCCC--------CCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccc
Confidence 0000000000111 1233332222110 01122 4679999999999999988766555555443
Q ss_pred CCCCCCCC------------CCCCCcceEEEeccCCcEEEEEEecCC---CcceeeeecCceEEEEEEcCCCCCCCC-CC
Q 007735 414 LDFPTKPV------------TGPPRMETSVINGTYRGFMEVILQNND---TKMHAYHMSGYAFFVVGMDYGEWTDNS-RG 477 (591)
Q Consensus 414 ~~~~~~p~------------~~~~~~~~~v~~~~~g~~ve~vl~N~~---~~~HPfHlHG~~F~Vv~~g~g~~~~~~-~~ 477 (591)
.+++..+. +-..+.+++++.+++|++|||+|+|.+ ...||||||||+||||++|.|.|+... ..
T Consensus 387 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~ 466 (539)
T TIGR03389 387 TDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPA 466 (539)
T ss_pred cCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCcc
Confidence 33222111 001233678899999999999999975 448999999999999999999887542 23
Q ss_pred CCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCCcccc
Q 007735 478 TYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFC 550 (591)
Q Consensus 478 ~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~~~~c 550 (591)
.+|+.||++|||+.|+++||++|||++||||.|+|||||..|+..||++.|.+...+.......++|++++.|
T Consensus 467 ~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 467 KFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred ccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 6899999999999999999999999999999999999999999999999998876544444567899999998
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.2e-101 Score=843.68 Aligned_cols=509 Identities=29% Similarity=0.522 Sum_probs=389.1
Q ss_pred CceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCC-CCceeeecCccCCCCCCCCCCCC-CC
Q 007735 25 DLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-TN 102 (591)
Q Consensus 25 ~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq 102 (591)
+++++|+|+|++..++|||+++++++|||++|||+||+++||+|+|+|+|+|+ ++++|||||++|++++|+||+++ ||
T Consensus 21 ~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq 100 (574)
T PLN02191 21 AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQ 100 (574)
T ss_pred cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcccc
Confidence 46899999999999999999999999999999999999999999999999998 78999999999999999999998 99
Q ss_pred CccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhhc
Q 007735 103 CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDA 182 (591)
Q Consensus 103 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~~ 182 (591)
|||+||++|+|+|++ +|+||||||||.+.|+++||+|+|||+++.....++ .+|+|++|+|+|||++........+..
T Consensus 101 ~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 178 (574)
T PLN02191 101 CAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSS 178 (574)
T ss_pred CCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhcc
Confidence 999999999999999 589999999999999999999999999765433333 469999999999999864432222221
Q ss_pred --CCCCCCCceEEEcCcCCCCCCCccC--------------CCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCee
Q 007735 183 --GKGLGMPDGVLINGKGPYQYNTTLV--------------PDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNL 246 (591)
Q Consensus 183 --~~~~~~~~~~lING~~~~~~~~~~~--------------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~ 246 (591)
....++++++||||++.+.|..+.. ...+...+++|++||+|||||||+|..+.+.|+|+||+|
T Consensus 179 ~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~ 258 (574)
T PLN02191 179 KPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKL 258 (574)
T ss_pred CCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeE
Confidence 1223568999999999887743210 012333479999999999999999999999999999999
Q ss_pred EEEeecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCC--CCCCCC
Q 007735 247 LLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKA--RGPLPE 324 (591)
Q Consensus 247 ~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~--~~~~p~ 324 (591)
+|||+||.+++|+.+++|.|++||||||+|+++++++++||||+....... ......|||+|.+..... +.+.+.
T Consensus 259 tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~ 335 (574)
T PLN02191 259 VVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPV 335 (574)
T ss_pred EEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999876548999997643221 123356999998754211 111111
Q ss_pred CCCCCcCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhc
Q 007735 325 GPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLAD 404 (591)
Q Consensus 325 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~ 404 (591)
.|... +.... ......+......+.+.. ...++++.+.... ..++..+|++||++|..|++|+|++.
T Consensus 336 ~p~~~-~~~~~----~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~--~~~~~~~~~~n~~s~~~p~~P~L~~~ 402 (574)
T PLN02191 336 TPRWD-DFERS----KNFSKKIFSAMGSPSPPK------KYRKRLILLNTQN--LIDGYTKWAINNVSLVTPATPYLGSV 402 (574)
T ss_pred CCccc-ccchh----hcccccccccccCCCCCC------cccceEEEecccc--eeCCeEEEEECcccCcCCCcchHHHH
Confidence 11110 10100 111111111000111110 1123444443221 23456689999999999999998876
Q ss_pred cccccccccCCCCCC----------C-CCCCCCcceEEEeccCCcEEEEEEecCC------CcceeeeecCceEEEEEEc
Q 007735 405 WFKVKGAYKLDFPTK----------P-VTGPPRMETSVINGTYRGFMEVILQNND------TKMHAYHMSGYAFFVVGMD 467 (591)
Q Consensus 405 ~~~~~g~~~~~~~~~----------p-~~~~~~~~~~v~~~~~g~~ve~vl~N~~------~~~HPfHlHG~~F~Vv~~g 467 (591)
+.+.++.|+.+.+.. + .....+.+++++.+++|++|||+|+|.+ ...||||||||+||||++|
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G 482 (574)
T PLN02191 403 KYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYG 482 (574)
T ss_pred hhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEec
Confidence 654444443321110 0 0011234678899999999999999985 5689999999999999999
Q ss_pred CCCCCCC-CCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCC
Q 007735 468 YGEWTDN-SRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDN 546 (591)
Q Consensus 468 ~g~~~~~-~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~ 546 (591)
.|.|+++ ....||+.||++|||+.|+++||++|||++||||+|+|||||+.|+..||++.|. +.+++ ..++|++
T Consensus 483 ~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~~----~~~~p~~ 557 (574)
T PLN02191 483 DGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLNR----IGKIPDE 557 (574)
T ss_pred CCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChhh----ccCCCcc
Confidence 9999863 2246899999999999999999999999999999999999999999999999884 34433 2447899
Q ss_pred cccccCcCCC
Q 007735 547 ALFCGALSHL 556 (591)
Q Consensus 547 ~~~c~~~~~~ 556 (591)
.+.|+.+++.
T Consensus 558 ~~~C~~~~~~ 567 (574)
T PLN02191 558 ALGCGLTKQF 567 (574)
T ss_pred hhhhhccccc
Confidence 9999977553
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.6e-99 Score=833.21 Aligned_cols=528 Identities=30% Similarity=0.505 Sum_probs=401.1
Q ss_pred CchhhhhHHHHHHHHHHhhhcccCCceEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECC-CCC
Q 007735 1 MALCRGLSLLAIHIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKL-DES 79 (591)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~ 79 (591)
|.++++|+++ +++ ++...+++.+++|+|+|+++.++|||+++++|+|||++|||+|++++||+|+|+|+|+| +++
T Consensus 2 ~~~~~~~~~~-~~~---~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~ 77 (566)
T PLN02604 2 MRFLALFFLL-FSV---LNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTEN 77 (566)
T ss_pred hhhhhHHHHH-HHH---HHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCC
Confidence 4455555444 222 23344556789999999999999999999999999999999999999999999999998 589
Q ss_pred ceeeecCccCCCCCCCCCCCC-CCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCC
Q 007735 80 LLIHWSGIQQRRSSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPD 158 (591)
Q Consensus 80 ~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d 158 (591)
++|||||+++.+++|+||+++ +||+|+||++++|+|++ +|+||||||||.+.|+.+||+|+|||++++..+.|+ .+|
T Consensus 78 ~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d 155 (566)
T PLN02604 78 VAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYD 155 (566)
T ss_pred CCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccC
Confidence 999999999999999999998 99999999999999999 699999999999999999999999999987655566 468
Q ss_pred CcceEEecccccCchHHHHHHhhcC--CCCCCCceEEEcCcCCCCCCCcc-----------CCCCCcceeEEEecCCEEE
Q 007735 159 GDITILIGDWYTRNHTALRKTLDAG--KGLGMPDGVLINGKGPYQYNTTL-----------VPDGIDYETIEVHPGKTYR 225 (591)
Q Consensus 159 ~e~~l~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~lING~~~~~~~~~~-----------~~~~~~~~~~~v~~G~~~r 225 (591)
.|.+|+|+||+++...++...+... ....++++++|||++.++|.... ....+..+.++|++||+||
T Consensus 156 ~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~R 235 (566)
T PLN02604 156 YDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYR 235 (566)
T ss_pred cceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEE
Confidence 8999999999998765443322211 12246899999999988774221 1112345689999999999
Q ss_pred EEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcce
Q 007735 226 IRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTG 305 (591)
Q Consensus 226 lRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~ 305 (591)
|||||+|..+.+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|+++++++++||||+....... ....+
T Consensus 236 lRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~ 312 (566)
T PLN02604 236 LRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPG 312 (566)
T ss_pred EEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcce
Confidence 999999999999999999999999999999999999999999999999999999876558999986543211 23567
Q ss_pred EEEEEecCCCCCCCCCC--CCCCCCCcCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCe
Q 007735 306 VAILHYTNSKGKARGPL--PEGPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGK 383 (591)
Q Consensus 306 ~ail~y~~~~~~~~~~~--p~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 383 (591)
.|||+|.+.......+. +..+... +.....++...++.. .. .+. ......++++.+..... ..++.
T Consensus 313 ~aIL~Y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~---~~~------~~~~~~d~~~~~~~~~~-~~~~~ 380 (566)
T PLN02604 313 LAIFNYYPNHPRRSPPTVPPSGPLWN-DVEPRLNQSLAIKAR-HG---YIH------PPPLTSDRVIVLLNTQN-EVNGY 380 (566)
T ss_pred eEEEEECCCCCCCCCCCCCCCCCccc-ccchhhcchhccccc-cc---CcC------CCCCCCCeEEEEecccc-ccCCe
Confidence 89999986432111110 1111110 000011111111000 00 000 01123455555433221 23456
Q ss_pred eEEEEcCeeccCCCCchhhhccccccccccCCC-CC-----------CCCCCCCCcceEEEeccCCcEEEEEEecCC---
Q 007735 384 RRATLSGISFVNPSTPIRLADWFKVKGAYKLDF-PT-----------KPVTGPPRMETSVINGTYRGFMEVILQNND--- 448 (591)
Q Consensus 384 ~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~-~~-----------~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~--- 448 (591)
.+|+|||++|..|++|+|++.+...++.|+.+. +. .......+.+.+++.++.|++||++|+|.+
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 789999999998999998776654455554221 10 001112344677899999999999999975
Q ss_pred ---CcceeeeecCceEEEEEEcCCCCCCCC-CCCCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeecccccchhccc
Q 007735 449 ---TKMHAYHMSGYAFFVVGMDYGEWTDNS-RGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQ 524 (591)
Q Consensus 449 ---~~~HPfHlHG~~F~Vv~~g~g~~~~~~-~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM 524 (591)
...||||||||+||||++|.|.|+... ...||+.||++|||+.|+++||++|||++||||.|+|||||+.|+..||
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM 540 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGM 540 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCC
Confidence 457999999999999999999887543 3479999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCcccccCcC
Q 007735 525 ETYVRVVNPEATNKTEFPIPDNALFCGALS 554 (591)
Q Consensus 525 ~~~~~V~~p~~~~~~~~~~p~~~~~c~~~~ 554 (591)
++++... +++ ..++|++++.|+..+
T Consensus 541 ~~v~~e~-~~~----~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 541 GVVFEEG-IER----VGKLPSSIMGCGESK 565 (566)
T ss_pred EEEEeeC-hhh----ccCCCCCcCccccCC
Confidence 9999653 332 356889999998554
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=3.2e-98 Score=820.70 Aligned_cols=502 Identities=29% Similarity=0.528 Sum_probs=386.1
Q ss_pred eEEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCC-CCceeeecCccCCCCCCCCCCCC-CCCc
Q 007735 27 FVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-TNCP 104 (591)
Q Consensus 27 ~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~ 104 (591)
+|+|+|+|+++.++|||+++++++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|.+++||||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 88999999999999999999998 9999
Q ss_pred cCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhhc-C
Q 007735 105 IPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDA-G 183 (591)
Q Consensus 105 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~~-~ 183 (591)
|+||++|+|+|++ +|+||||||||.+.|+++||+|+|||+++...+.|+ .+|+|++|+|+||+++...+....+.. .
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 689999999999999999999999999986545555 458999999999999876543322221 1
Q ss_pred -CCCCCCceEEEcCcCCCCCCCccC-------------CCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEE
Q 007735 184 -KGLGMPDGVLINGKGPYQYNTTLV-------------PDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA 249 (591)
Q Consensus 184 -~~~~~~~~~lING~~~~~~~~~~~-------------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 249 (591)
....+++.++|||++.++|..... ...+....++|++||+|||||||+|..+.+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 122468999999999877743210 112234569999999999999999999999999999999999
Q ss_pred eecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCC--CCCCCCCC
Q 007735 250 ETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKAR--GPLPEGPN 327 (591)
Q Consensus 250 a~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~--~~~p~~p~ 327 (591)
|+||.+++|..++.|.|++||||||+|++++.++++|||++...... .......|||+|.++..... .+.+..|.
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~ 315 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVTPA 315 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999987655899998764321 12345789999987542210 11111121
Q ss_pred CCcCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhcccc
Q 007735 328 DEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFK 407 (591)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~ 407 (591)
.. +..... .....+......+.+. ...++++.+..... ..++..+|++||++|..|+.|+|.+.+++
T Consensus 316 ~~-~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~p~l~~~~~~ 382 (541)
T TIGR03388 316 WD-DFDRSK----AFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQN-KINGYTKWAINNVSLTLPHTPYLGSLKYN 382 (541)
T ss_pred cc-ccchhh----ccchhhhccccCCCCC-------CCCCcEEEEeccCc-ccCceEEEEECcccCCCCCccHHHHHhhc
Confidence 10 100000 0000010000011111 12344544333211 23455689999999998999998776554
Q ss_pred ccccccCCCC-----------CCCCCCCCCcceEEEeccCCcEEEEEEecCC------CcceeeeecCceEEEEEEcCCC
Q 007735 408 VKGAYKLDFP-----------TKPVTGPPRMETSVINGTYRGFMEVILQNND------TKMHAYHMSGYAFFVVGMDYGE 470 (591)
Q Consensus 408 ~~g~~~~~~~-----------~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~------~~~HPfHlHG~~F~Vv~~g~g~ 470 (591)
..+.|+.+.+ ..+.....+.+++++.++.|++||++|+|.+ ...||||||||+||||++|.|.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~ 462 (541)
T TIGR03388 383 LLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGK 462 (541)
T ss_pred CCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCC
Confidence 4333332110 0111123345678899999999999999974 4579999999999999999998
Q ss_pred CCCC-CCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCCCCCCCCCCCCCCccc
Q 007735 471 WTDN-SRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALF 549 (591)
Q Consensus 471 ~~~~-~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~~~~~~~~~~p~~~~~ 549 (591)
|+.. ....+|+.||++|||+.|+++||++|||++||||.|+|||||+.|+..||+++|... +++ ...+|++++.
T Consensus 463 ~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~~----~~~~P~~~~~ 537 (541)
T TIGR03388 463 FRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VEK----VGKLPKEALG 537 (541)
T ss_pred CCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-ccc----cCCCCccccC
Confidence 8743 234699999999999999999999999999999999999999999999999999643 332 3558999999
Q ss_pred cc
Q 007735 550 CG 551 (591)
Q Consensus 550 c~ 551 (591)
|+
T Consensus 538 C~ 539 (541)
T TIGR03388 538 CG 539 (541)
T ss_pred CC
Confidence 97
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=4.5e-96 Score=801.37 Aligned_cols=489 Identities=23% Similarity=0.400 Sum_probs=372.0
Q ss_pred EEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCC-CCceeeecCccCCCCCCCCCCCC-CCCccC
Q 007735 29 YFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-TNCPIP 106 (591)
Q Consensus 29 ~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~I~ 106 (591)
.|+|+|++..++|||+++++++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|+.++||||+|+ |||||+
T Consensus 10 ~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~ 89 (538)
T TIGR03390 10 DHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIP 89 (538)
T ss_pred cEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCC
Confidence 5899999999999999999999999999999999999999999999997 89999999999999999999999 999999
Q ss_pred CCCcEEEEEEeC-CceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhhcCC-
Q 007735 107 PKWNWTYQFQVK-DQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGK- 184 (591)
Q Consensus 107 PG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~- 184 (591)
||++|+|+|+++ +|+||||||||.+.|+. ||+|+|||++++.. ++ .+|+|++|+|+||+++...++...+..+.
T Consensus 90 PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 90 PGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 999999999985 58999999999999987 59999999987543 33 35899999999999998776544333221
Q ss_pred -CCCCCceEEEcCcCCCCCCCccC--CCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCe-eEEEeecCCceeeee
Q 007735 185 -GLGMPDGVLINGKGPYQYNTTLV--PDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHN-LLLAETEGSYTVQQN 260 (591)
Q Consensus 185 -~~~~~~~~lING~~~~~~~~~~~--~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~p~~ 260 (591)
..++++.+||||+..+.|..... ...|..+.++|++||+|||||||+|..+.+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 23467899999997655422111 12345689999999999999999999999999999999 999999999999999
Q ss_pred eeEEEEccccEEEEEEEeCCC-------CCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcc
Q 007735 261 YTSLDIHVGQSYSFLVTMDQN-------ASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKT 333 (591)
Q Consensus 261 ~d~v~i~pGqR~dvlv~~~~~-------~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~ 333 (591)
+++|.|++||||||+|+++++ ++ +||||+.....++ ...+.|||+|.++........|..+.. ...
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~-~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~~~~~--~~~ 318 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKR-QYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPETPPL--PLP 318 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCC-cEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCCCCCC--Ccc
Confidence 999999999999999999975 35 9999997643222 256789999986532211111111110 000
Q ss_pred cccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCc-ccCCeeEEEEcCeeccC--CCCchhhhccccccc
Q 007735 334 FSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPE-MIDGKRRATLSGISFVN--PSTPIRLADWFKVKG 410 (591)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~-~~~g~~~~~iNg~s~~~--p~~P~l~~~~~~~~g 410 (591)
.......+ .++.+......+. +. ....+++++.+...... ..++..+|+|||++|.. |++|+|.+.+.+...
T Consensus 319 ~~~~~~~~--~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~ 393 (538)
T TIGR03390 319 NSTYDWLE--YELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLP 393 (538)
T ss_pred Ccchhhhh--eeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCC
Confidence 00000111 1121111100000 00 01235667666654321 12567899999999985 789998765432100
Q ss_pred cccCCCCCCCCCCCCCcceEEEeccCCcEEEEEEecCC--------CcceeeeecCceEEEEEEcCCCCCCCC-CCCCCC
Q 007735 411 AYKLDFPTKPVTGPPRMETSVINGTYRGFMEVILQNND--------TKMHAYHMSGYAFFVVGMDYGEWTDNS-RGTYNK 481 (591)
Q Consensus 411 ~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~--------~~~HPfHlHG~~F~Vv~~g~g~~~~~~-~~~~n~ 481 (591)
.. ..+...+........++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|+
T Consensus 394 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl 472 (538)
T TIGR03390 394 AT-PNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLEN 472 (538)
T ss_pred cC-CCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhcc
Confidence 00 00000001112223567888999999999999974 478999999999999999999998543 235889
Q ss_pred CCCCccceEEeC----------CCcEEEEEEEeCCccceeeecccccchhccceEEEEEecCC
Q 007735 482 WDGIARTTTQVY----------PGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPE 534 (591)
Q Consensus 482 ~~p~~rDTv~Vp----------p~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~~p~ 534 (591)
.||++|||+.|| ++||++|||++||||+|+|||||.+|...||++++.|.+.+
T Consensus 473 ~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 473 YTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred CCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 999999999996 78999999999999999999999999999999999987654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=5.2e-79 Score=665.87 Aligned_cols=430 Identities=23% Similarity=0.313 Sum_probs=320.5
Q ss_pred EEEEEEEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCC-CCCccC
Q 007735 28 VYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCPIP 106 (591)
Q Consensus 28 ~~~~~~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~ 106 (591)
++|+|++++.+++++|+.+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +++||+|+ |||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999875 57999998 999999
Q ss_pred CCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhh-----
Q 007735 107 PKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLD----- 181 (591)
Q Consensus 107 PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~----- 181 (591)
||++|+|+|++ .++||||||||.+.|+++||+|+|||++++.. |+ .+|+|++|+|+||++.+...+...+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~--p~-~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPD--PV-RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccc--cC-CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999999 58999999999999999999999999986543 33 35899999999999875544322111
Q ss_pred -----------------cCC---------C-------------CCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCC
Q 007735 182 -----------------AGK---------G-------------LGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGK 222 (591)
Q Consensus 182 -----------------~~~---------~-------------~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~ 222 (591)
.|. . .+....+||||+.. ...+++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-----------~~~~~~~v~~G~ 268 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-----------AGNWTGLFRPGE 268 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-----------CCCceEEECCCC
Confidence 010 0 00112478999875 234679999999
Q ss_pred EEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCC
Q 007735 223 TYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKR 302 (591)
Q Consensus 223 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~ 302 (591)
+|||||||+|+.+.+.|+|+||+|+||++||.+++|+.++.+.|++||||||+|+++ ..| .|+|++......
T Consensus 269 rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g-~~~i~a~~~~~~------ 340 (587)
T TIGR01480 269 KVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDD-AFTIFAQDSDRT------ 340 (587)
T ss_pred EEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCc-eEEEEEEecCCC------
Confidence 999999999999999999999999999999999999999999999999999999987 346 899998764321
Q ss_pred cceEEEEEecCCCCCCCCCCCCCCCCCc-Cccc-cc--cc-c--------cccc---------------ccccc------
Q 007735 303 VTGVAILHYTNSKGKARGPLPEGPNDEF-DKTF-SM--NQ-A--------RSIR---------------WNVSA------ 348 (591)
Q Consensus 303 ~~~~ail~y~~~~~~~~~~~p~~p~~~~-~~~~-~~--~~-~--------~~~~---------------~~l~~------ 348 (591)
....++|++.+.......+++..|.... +..- .. .. . .... .++..
T Consensus 341 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (587)
T TIGR01480 341 GYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPA 420 (587)
T ss_pred ceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcc
Confidence 3466788876532111111111110000 0000 00 00 0 0000 00000
Q ss_pred ----------CCCCC-----CCC--------CCCC----------cCccceeEEEEEecCCCcccCCeeEEEEcCeeccC
Q 007735 349 ----------SGARP-----NPQ--------GSFR----------YGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVN 395 (591)
Q Consensus 349 ----------~~~~p-----~p~--------~~~~----------~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~ 395 (591)
.++.| .|. .... .....++|++.+... .......|+|||..|.+
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~---g~m~~~~wtiNG~~~~~ 497 (587)
T TIGR01480 421 SEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLT---GNMERFAWSFDGEAFGL 497 (587)
T ss_pred cccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEc---CCCceeEEEECCccCCC
Confidence 00000 000 0000 001234555555442 12235568999987531
Q ss_pred CCCchhhhccccccccccCCCCCCCCCCCCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCC
Q 007735 396 PSTPIRLADWFKVKGAYKLDFPTKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNS 475 (591)
Q Consensus 396 p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~ 475 (591)
. ..+.++.|++|+|.|.|...+.|||||||+.|+|+..+ |.+
T Consensus 498 -~--------------------------------~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~~---- 539 (587)
T TIGR01480 498 -K--------------------------------TPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GEF---- 539 (587)
T ss_pred -C--------------------------------CceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Ccc----
Confidence 1 11346789999999999999999999999999998653 211
Q ss_pred CCCCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeecccccchhccceEEEEEe
Q 007735 476 RGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 476 ~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HCHil~H~~~GM~~~~~V~ 531 (591)
+.++||+.|+|++++.++|++||||.|+||||++.|++.|||..++|.
T Consensus 540 --------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 540 --------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred --------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 457899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.5e-75 Score=634.44 Aligned_cols=441 Identities=16% Similarity=0.166 Sum_probs=302.2
Q ss_pred eEEEEEEEEEEEecCCCe-eeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCcc
Q 007735 27 FVYFDFEVSYITASPLGV-PQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPI 105 (591)
Q Consensus 27 ~~~~~~~v~~~~~~~dG~-~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I 105 (591)
...|+|++++...+++|. ..++|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++.+ .+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCC
Confidence 346999999999999864 45799999999999999999999999999999999999999999864 599987 8999
Q ss_pred CCCCcEEEEEEeCCceeeeEEecCh----hhhhhcCceeeEEEecCCCCCCCCC--CCCCcceEEecccccCchHHHHHH
Q 007735 106 PPKWNWTYQFQVKDQVGSFFYFPSL----HFQRASGGFGGFIINNRAIIPIPFD--TPDGDITILIGDWYTRNHTALRKT 179 (591)
Q Consensus 106 ~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~p~~--~~d~e~~l~l~d~~~~~~~~~~~~ 179 (591)
.||++|+|+|++++++||||||||. +.|+.+||+|+|||+++++.+.+++ ...+|++|+|+||+++.++++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996568999999995 7999999999999999865433332 245699999999999866654322
Q ss_pred hhcC--CCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEE-eCCeeEEEeecCCce
Q 007735 180 LDAG--KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRI-QNHNLLLAETEGSYT 256 (591)
Q Consensus 180 ~~~~--~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~ 256 (591)
.+.. .....+|.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~--------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l 265 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY--------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLL 265 (523)
T ss_pred ccccccccCccCCeEEECCccc--------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcc
Confidence 2211 1123578999999986 778875 579999999999999999998 899999999999986
Q ss_pred -eeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeeccccc-ccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCccc
Q 007735 257 -VQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNE-SQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTF 334 (591)
Q Consensus 257 -~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~ 334 (591)
+|..+++|.|+|||||||+|++++ ++ +|.+.+....... ..........++++.........++|......-....
T Consensus 266 ~~P~~v~~l~lapGeR~dvlv~~~~-~~-~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~ 343 (523)
T PRK10965 266 AEPVKVSELPILMGERFEVLVDTSD-GK-AFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPS 343 (523)
T ss_pred cCccEeCeEEECccceEEEEEEcCC-Cc-eEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCc
Confidence 699999999999999999999985 45 8888876432111 0000111334555543221111122211000000000
Q ss_pred -ccccccccccccccCCC-------C-CCCCCCCCcCccce--e-EEE------EEecC---CCcccCCeeEEEEcCeec
Q 007735 335 -SMNQARSIRWNVSASGA-------R-PNPQGSFRYGSINV--T-EVY------VLRNK---PPEMIDGKRRATLSGISF 393 (591)
Q Consensus 335 -~~~~~~~~~~~l~~~~~-------~-p~p~~~~~~~~~~~--~-~~~------~l~~~---~~~~~~g~~~~~iNg~s~ 393 (591)
.....+.+...+..... . ....+. .+.... + ..+ .+... .....+....|+|||++|
T Consensus 344 ~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~ 421 (523)
T PRK10965 344 LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQA--MAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAF 421 (523)
T ss_pred ccccceeEEEEeeccccchhhhhhccccccccc--cccccccccccccccccccccccccccccccccccccccCCCeEC
Confidence 00001111111100000 0 000000 000000 0 000 00000 000000001247788776
Q ss_pred cCCCCchhhhccccccccccCCCCCCCCCCCCCcceEEEeccCCcEEEEEEecCCC-cceeeeecCceEEEEEEcCCCCC
Q 007735 394 VNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPRMETSVINGTYRGFMEVILQNNDT-KMHAYHMSGYAFFVVGMDYGEWT 472 (591)
Q Consensus 394 ~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~-~~HPfHlHG~~F~Vv~~g~g~~~ 472 (591)
... . ..+.++.|++++|.|.|.+. +.|||||||++|||+++++...
T Consensus 422 ~~~-~-------------------------------~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~- 468 (523)
T PRK10965 422 DMN-K-------------------------------PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPP- 468 (523)
T ss_pred CCC-C-------------------------------cceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCC-
Confidence 421 1 11346789999999999875 6899999999999999964321
Q ss_pred CCCCCCCCCCCCCccceEEeCCCcEEEEEEEe----CCccceeeecccccchhccceEEEEEe
Q 007735 473 DNSRGTYNKWDGIARTTTQVYPGAWTAILVSL----DNVGIWNLRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 473 ~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~a----dNpG~W~~HCHil~H~~~GM~~~~~V~ 531 (591)
...++.|||||.|+| +.+.|++++ ||+|.|+||||||+|||.|||..|+|.
T Consensus 469 -------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 469 -------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred -------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 122468999999988 666665555 567899999999999999999999884
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.9e-73 Score=611.57 Aligned_cols=404 Identities=16% Similarity=0.194 Sum_probs=294.9
Q ss_pred EEEEEEEEEEecCC-CeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCC
Q 007735 29 YFDFEVSYITASPL-GVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPP 107 (591)
Q Consensus 29 ~~~~~v~~~~~~~d-G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~P 107 (591)
.++|+++.....++ |.++++|+|||++|||+||+++||+|+|+|+|+|+++|++||||+++... .+||++ ++|.|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999998888 46789999999999999999999999999999999999999999998764 577765 88999
Q ss_pred CCcEEEEEEeCCceeeeEEecCh----hhhhhcCceeeEEEecCCCCCCCCC--CCCCcceEEecccccCchHHHHHHhh
Q 007735 108 KWNWTYQFQVKDQVGSFFYFPSL----HFQRASGGFGGFIINNRAIIPIPFD--TPDGDITILIGDWYTRNHTALRKTLD 181 (591)
Q Consensus 108 G~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~p~~--~~d~e~~l~l~d~~~~~~~~~~~~~~ 181 (591)
|++|+|+|++.+++||||||||. +.|+.+||+|+|||+++.+.+.+++ ...+|++|+|+||+++........ .
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-E 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-c
Confidence 99999999986679999999995 4699999999999999765443432 234599999999999865432211 1
Q ss_pred cCCCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEE-eCCeeEEEeecCCce-eee
Q 007735 182 AGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRI-QNHNLLLAETEGSYT-VQQ 259 (591)
Q Consensus 182 ~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~ 259 (591)
.......+|.++|||+.. |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|.
T Consensus 202 ~~~~g~~gd~~lvNG~~~--------------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~ 266 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS--------------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPV 266 (471)
T ss_pred cccCCccCCeeEECCccC--------------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCc
Confidence 111234678999999986 88999874 7999999999999999999 899999999997775 699
Q ss_pred eeeEEEEccccEEEEEEEeCCCCCcceEEEEeeccccc----ccCCC---cceEEEEEecCCCCCCCCCCCCCCCCCcCc
Q 007735 260 NYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNE----SQWKR---VTGVAILHYTNSKGKARGPLPEGPNDEFDK 332 (591)
Q Consensus 260 ~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~----~~~~~---~~~~ail~y~~~~~~~~~~~p~~p~~~~~~ 332 (591)
.++++.|+|||||||+|++++ ++ .+.+.+....... ..... .....+++....... .+.+ .
T Consensus 267 ~~~~l~l~pGeR~dvlVd~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------- 334 (471)
T PRK10883 267 SVKQLSLAPGERREILVDMSN-GD-EVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL--PLVT-D------- 334 (471)
T ss_pred EeCeEEECCCCeEEEEEECCC-Cc-eEEEECCCccccccccccccCCccccccceeEEEEccccc--cCCC-C-------
Confidence 999999999999999999975 34 6666553211000 00000 001122232211000 0000 0
Q ss_pred ccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccc
Q 007735 333 TFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAY 412 (591)
Q Consensus 333 ~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~ 412 (591)
.++..+.... +.+. ...-++++.+.. ..|.|||.+|.+...
T Consensus 335 --------~~p~~l~~~~--~~~~------~~~~~~~~~l~~---------~~~~INg~~~~~~~~-------------- 375 (471)
T PRK10883 335 --------NLPMRLLPDE--IMEG------SPIRSREISLGD---------DLPGINGALWDMNRI-------------- 375 (471)
T ss_pred --------cCChhhcCCC--CCCC------CCcceEEEEecC---------CcCccCCcccCCCcc--------------
Confidence 0000011000 0000 011123333321 136799998753111
Q ss_pred cCCCCCCCCCCCCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEe
Q 007735 413 KLDFPTKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQV 492 (591)
Q Consensus 413 ~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~V 492 (591)
.+.++.|++++|.|.|. +.|||||||+.|||+++++... ...+..|||||.|
T Consensus 376 ------------------~~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~--------~~~~~gwkDTV~v 427 (471)
T PRK10883 376 ------------------DVTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMP--------FPEDRGWKDTVWV 427 (471)
T ss_pred ------------------eeecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCC--------CccccCcCcEEEc
Confidence 12457899999999886 6899999999999999964311 1123479999999
Q ss_pred CCCcEEEEEEEeCCcc----ceeeecccccchhccceEEEEEecC
Q 007735 493 YPGAWTAILVSLDNVG----IWNLRTENLDSWYLGQETYVRVVNP 533 (591)
Q Consensus 493 pp~g~~~irf~adNpG----~W~~HCHil~H~~~GM~~~~~V~~p 533 (591)
+ +.+.|++++|++| .||||||||+|||.|||..|+|..|
T Consensus 428 ~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 428 D--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred C--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 6 4599999999988 8999999999999999999999753
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.8e-59 Score=501.63 Aligned_cols=399 Identities=23% Similarity=0.263 Sum_probs=288.1
Q ss_pred cCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCC-CCCccCCCCcEEEEEEeC
Q 007735 40 SPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCPIPPKWNWTYQFQVK 118 (591)
Q Consensus 40 ~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~ 118 (591)
..++.....+++||++|||+|++++||+|+++++|+|.++|++||||+..+ +.+||++. +++++.||++++|.|+.
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~- 122 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ- 122 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC-
Confidence 445677889999999999999999999999999999988899999998765 78999988 99999999999999998
Q ss_pred CceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCchHHHHHHhhcCCCCCCCceEEEcCcC
Q 007735 119 DQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKG 198 (591)
Q Consensus 119 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~lING~~ 198 (591)
+++||||||+|.+.|+.+||+|++||++....+. ..|++..++..+|+.......... .........+..+|||+.
T Consensus 123 ~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~ 198 (451)
T COG2132 123 DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAI 198 (451)
T ss_pred CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCc
Confidence 4677999999999999999999999999765433 447777888888876644332221 011123346899999976
Q ss_pred CCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEEEe
Q 007735 199 PYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTM 278 (591)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~ 278 (591)
. +.+.++. ++|||||+|+++.+.+.+++.+++|+||++||.+++|..+|.+.|+|||||||++++
T Consensus 199 ~--------------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~ 263 (451)
T COG2132 199 L--------------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDM 263 (451)
T ss_pred c--------------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEc
Confidence 5 6666655 569999999998888999999999999999999999989999999999999999999
Q ss_pred CCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCC----CCCCCCCCcCcccccccccccccccccCCCCCC
Q 007735 279 DQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGP----LPEGPNDEFDKTFSMNQARSIRWNVSASGARPN 354 (591)
Q Consensus 279 ~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~----~p~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~ 354 (591)
++ .+ .|.+.+......+ ...+........ ..+.+ ....+.. +. ..... ...+.... +.
T Consensus 264 ~~-~~-~~~l~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--d~---~~~~~--~~~~~~~~--~~ 325 (451)
T COG2132 264 ND-GG-AVTLTALGEDMPD------TLKGFRAPNPIL-TPSYPVLNGRVGAPTG--DM---ADHAP--VGLLVTIL--VE 325 (451)
T ss_pred CC-CC-eEEEEeccccCCc------eeeeeecccccc-ccccccccccccCCCc--ch---hhccc--cccchhhc--CC
Confidence 95 44 6777765521111 111111111100 00000 0000100 00 00000 00000000 00
Q ss_pred CCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCCCCCCcceEEEec
Q 007735 355 PQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPRMETSVING 434 (591)
Q Consensus 355 p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~~~v~~~ 434 (591)
+. ......+.+. ...+...|.+|+..|.+. ...+.+
T Consensus 326 ~~-------~~~~~~~~l~-----~~~~~~~~~~n~~~~~~~--------------------------------~~~~~~ 361 (451)
T COG2132 326 PG-------PNRDTDFHLI-----GGIGGYVWAINGKAFDDN--------------------------------RVTLIA 361 (451)
T ss_pred Cc-------ccccccchhh-----cccccccccccCccCCCC--------------------------------cCceee
Confidence 00 0001111111 111234577777665421 122456
Q ss_pred cCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeec
Q 007735 435 TYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRT 514 (591)
Q Consensus 435 ~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HC 514 (591)
+.|++++|+|.|.+.+.|||||||+.|+|++.+. ..-...+.||||+.+.|+..++++|.+|+||.|+|||
T Consensus 362 ~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~~---------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HC 432 (451)
T COG2132 362 KAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGDA---------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHC 432 (451)
T ss_pred cCCCEEEEEEECCCCCccCeEEcCceEEEEecCC---------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEec
Confidence 7899999999999999999999999999999861 1222347899999999999999999999999999999
Q ss_pred ccccchhccceEEEEEe
Q 007735 515 ENLDSWYLGQETYVRVV 531 (591)
Q Consensus 515 Hil~H~~~GM~~~~~V~ 531 (591)
|+++|++.|||..+.|.
T Consensus 433 H~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 433 HILEHEDNGMMGQFGVV 449 (451)
T ss_pred cchhHhhcCCeeEEEec
Confidence 99999999999999875
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=6.3e-48 Score=394.28 Aligned_cols=265 Identities=17% Similarity=0.164 Sum_probs=218.6
Q ss_pred ccCCceEEEEEEEEEEEec-CCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCC--CCceeeecCccCCCCCCCCCC
Q 007735 22 SAADLFVYFDFEVSYITAS-PLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD--ESLLIHWSGIQQRRSSWQDGL 98 (591)
Q Consensus 22 ~~~~~~~~~~~~v~~~~~~-~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv 98 (591)
++...+++|+|++++.+.. .+|..+.+|+|||++|||+|++++||+|+|+|+|+++ .++++||||. .++||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 5566789999999999887 5799999999999999999999999999999999986 5789999996 258998
Q ss_pred CC-CCCccCCCCcEEEEEEeCCceeeeEEecC----hhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecccccCch
Q 007735 99 LG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPS----LHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNH 173 (591)
Q Consensus 99 ~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~ 173 (591)
+. +| |.||++++|+|++ +++|||||||| +..|+.+||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 76 65 9999999999998 68999999999 4689999999999999875422 458999999999999754
Q ss_pred HHHHHHhh-c-C-CCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEe
Q 007735 174 TALRKTLD-A-G-KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAE 250 (591)
Q Consensus 174 ~~~~~~~~-~-~-~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via 250 (591)
........ . + .....++.++|||+.... .+.+++++|+++||||+|++..+.+.|+++||.+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-----------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~ 238 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-----------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVW 238 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCC-----------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEE
Confidence 32111000 0 0 012457899999996422 25679999999999999999988999999999999999
Q ss_pred ecCCceeeee--eeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCC
Q 007735 251 TEGSYTVQQN--YTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSK 315 (591)
Q Consensus 251 ~DG~~~~p~~--~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 315 (591)
.||.++.+.. ++++.|+||||+||+|++++ +| .|+++++...... +....++++|++..
T Consensus 239 ~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 239 VTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred ECCcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999998644 89999999999999999996 68 9999987653321 13467999998654
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=9e-37 Score=267.02 Aligned_cols=115 Identities=41% Similarity=0.788 Sum_probs=108.4
Q ss_pred EEEEEEecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCC-CCCccCCCCcE
Q 007735 33 EVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCPIPPKWNW 111 (591)
Q Consensus 33 ~v~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~ 111 (591)
+|++.+++++|..+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++...+|+||+++ +||+|.||++|
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 57899999998889999999999999999999999999999999999999999999998889999998 99999999999
Q ss_pred EEEEEeCCceeeeEEecChhhhhhcCceeeEEEecC
Q 007735 112 TYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNR 147 (591)
Q Consensus 112 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 147 (591)
+|+|++++++||||||||...|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999766999999999988888999999999986
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=5.1e-30 Score=233.06 Aligned_cols=109 Identities=30% Similarity=0.428 Sum_probs=98.8
Q ss_pred CCCcceEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEE
Q 007735 424 PPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVS 503 (591)
Q Consensus 424 ~~~~~~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~ 503 (591)
..+.++..+.++.|+++||+|+|.+...|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|||+
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~ 107 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFR 107 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEE
T ss_pred ccCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEE
Confidence 34457788999999999999999999999999999999999998877665555678999999999999999999999999
Q ss_pred eCCccceeeecccccchhccceEEEEEec
Q 007735 504 LDNVGIWNLRTENLDSWYLGQETYVRVVN 532 (591)
Q Consensus 504 adNpG~W~~HCHil~H~~~GM~~~~~V~~ 532 (591)
+||||.|+||||+++|++.|||..++|.+
T Consensus 108 ~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 108 ADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp ETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=2.9e-28 Score=226.58 Aligned_cols=154 Identities=32% Similarity=0.539 Sum_probs=124.6
Q ss_pred CcceEEecccccCchHHHHH-HhhcC----CCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCC
Q 007735 159 GDITILIGDWYTRNHTALRK-TLDAG----KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGI 233 (591)
Q Consensus 159 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~ 233 (591)
+|++|+++|||++....+.. .+..+ ...+++++++|||++.++|.+... .....+.+++++|++|||||||+|.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~-~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADY-TGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGS-TTSTSGEEEEETTTEEEEEEEEESS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccc-cccccceEEEcCCcEEEEEEEeccC
Confidence 48899999999987766543 33322 236789999999999988865532 2345699999999999999999999
Q ss_pred cceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecC
Q 007735 234 STSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTN 313 (591)
Q Consensus 234 ~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~ 313 (591)
.+.+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++++++| +|+|++.............+..|||+|.+
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g-~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPG-NYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSS-EEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCC-eEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999998677 99999973222222224578899999986
Q ss_pred C
Q 007735 314 S 314 (591)
Q Consensus 314 ~ 314 (591)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 3
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.78 E-value=1.1e-18 Score=158.63 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=84.3
Q ss_pred EecCCCeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCC---CCceeeecCccCCCCCCCCCCCC-CCCccCCC---C-
Q 007735 38 TASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD---ESLLIHWSGIQQRRSSWQDGLLG-TNCPIPPK---W- 109 (591)
Q Consensus 38 ~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~---~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG---~- 109 (591)
.....+....-+.++|. ++|+|++++||+|+|+|+|.++ .++.||+||...+..+.|||++. +||+|.|+ +
T Consensus 33 ~~~~~~~~~~~f~~~~~-~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~ 111 (148)
T TIGR03095 33 AGPMPGPSMYSFEIHDL-KNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGK 111 (148)
T ss_pred EEcCCCCCceeEEecCC-CCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCc
Confidence 33445666777888995 6999999999999999999954 45667777766554556999997 99998884 1
Q ss_pred c--EEEEEEeCCceeeeEEecChhhhhhcCceeeEEEe
Q 007735 110 N--WTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIIN 145 (591)
Q Consensus 110 ~--~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 145 (591)
. .++.|+++ ++||||||||...|+.+||+|+|||+
T Consensus 112 ~~~~~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 112 FGYTDFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred cceeEEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 1 34556653 79999999999999999999999985
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.61 E-value=2.2e-15 Score=165.92 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=86.3
Q ss_pred eeeEEEEECCCCCCC--cEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCC---CCCCccCCCCcEEEEEEeC
Q 007735 44 VPQQVIAINGKFPGP--TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLL---GTNCPIPPKWNWTYQFQVK 118 (591)
Q Consensus 44 ~~~~~~~~Ng~~pgP--~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~---~tq~~I~PG~~~~Y~f~~~ 118 (591)
..+.+|+|||+.+++ .|++++||+|+|+|.|.+..++.|||||+.+... ..||.. .....|.||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEEC-
Confidence 457889999998874 7999999999999999999999999999976432 336642 223789999999999998
Q ss_pred CceeeeEEecChhhhhhcCceeeEEEe
Q 007735 119 DQVGSFFYFPSLHFQRASGGFGGFIIN 145 (591)
Q Consensus 119 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 145 (591)
+++|+||||||...|...||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 689999999999999999999999873
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.54 E-value=7.2e-13 Score=136.07 Aligned_cols=244 Identities=13% Similarity=0.064 Sum_probs=152.9
Q ss_pred CceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCc-ceEEEEEeCCeeEEEeecCCceeeeeeeEEEEc
Q 007735 189 PDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGIS-TSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIH 267 (591)
Q Consensus 189 ~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~ 267 (591)
-+.+++||+.. .|.|++++|++++++|.|.... ..+.+++|++. +.||... ...|.
T Consensus 47 ~~~~~~nG~~p-------------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~ 103 (311)
T TIGR02376 47 YQAMTFDGSVP-------------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVN 103 (311)
T ss_pred EEEEEECCccc-------------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeEC
Confidence 35799999864 3899999999999999997532 46889999874 4576431 22389
Q ss_pred cccEEEEEEEeCCCCCcceEEEEeecc--cccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcccccccccccccc
Q 007735 268 VGQSYSFLVTMDQNASTDYYIVASARF--VNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARSIRWN 345 (591)
Q Consensus 268 pGqR~dvlv~~~~~~g~~y~i~~~~~~--~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 345 (591)
||+++.+.++++ .+| .||.+++... ..+. .....+.|.+.... +.+ .. |.+..+ ...+ |.
T Consensus 104 PG~t~ty~F~~~-~~G-ty~YH~H~~~~~~~q~---~~Gl~G~liV~~~~-----~~~---~~--d~e~~l-~l~d--~~ 165 (311)
T TIGR02376 104 PGETATLRFKAT-RPG-AFVYHCAPPGMVPWHV---VSGMNGAIMVLPRE-----GLP---EY--DKEYYI-GESD--LY 165 (311)
T ss_pred CCCeEEEEEEcC-CCE-EEEEEcCCCCchhHHh---hcCcceEEEeeccC-----CCc---Cc--ceeEEE-eeee--Ee
Confidence 999999999987 478 9999998532 1110 01123334433221 111 10 111111 0001 11
Q ss_pred cccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCCCCC
Q 007735 346 VSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPP 425 (591)
Q Consensus 346 l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~ 425 (591)
+...... .+.+ ..+ ... +. ... ...+.|||+.+.. .|
T Consensus 166 ~~~~~~~---~~~~-----~~~----~~~-~~-~~~-~~~~~iNG~~~~~--~~-------------------------- 202 (311)
T TIGR02376 166 TPKDEGE---GGAY-----EDD----VAA-MR-TLT-PTHVVFNGAVGAL--TG-------------------------- 202 (311)
T ss_pred ccccccc---cccc-----cch----HHH-Hh-cCC-CCEEEECCccCCC--CC--------------------------
Confidence 1100000 0000 000 000 00 011 1247788875310 00
Q ss_pred CcceEEEeccCCcEEEEEEecCCC-cceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCC-ccceEEeCCCcEEEEEEE
Q 007735 426 RMETSVINGTYRGFMEVILQNNDT-KMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGI-ARTTTQVYPGAWTAILVS 503 (591)
Q Consensus 426 ~~~~~v~~~~~g~~ve~vl~N~~~-~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~-~rDTv~Vpp~g~~~irf~ 503 (591)
.+.++.|+++.|.|.|.+. ..+.||++|++|++|..+++...+ +. ..||+.|.||+...|.++
T Consensus 203 -----~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~ 267 (311)
T TIGR02376 203 -----DNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYT 267 (311)
T ss_pred -----CcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEE
Confidence 1245678999999999875 578999999999999996432211 22 269999999999999999
Q ss_pred eCCccceeeecccccch-hccceEEEEEe
Q 007735 504 LDNVGIWNLRTENLDSW-YLGQETYVRVV 531 (591)
Q Consensus 504 adNpG~W~~HCHil~H~-~~GM~~~~~V~ 531 (591)
+++||.|.+|||...+. ..|++..++|.
T Consensus 268 ~~~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 268 FEQPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred eCCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 99999999999998777 77999988875
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.38 E-value=4.2e-12 Score=111.56 Aligned_cols=100 Identities=26% Similarity=0.197 Sum_probs=78.3
Q ss_pred hhhcccCCceEEEEEEEE--EEEe---cCCCeeeEEE-EECCCCCCCcEEeeCCCEEEEEEEECCCCC--ceeeecCccC
Q 007735 18 ASLCSAADLFVYFDFEVS--YITA---SPLGVPQQVI-AINGKFPGPTINVTTNNNVVVNVRNKLDES--LLIHWSGIQQ 89 (591)
Q Consensus 18 ~~~~~~~~~~~~~~~~v~--~~~~---~~dG~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~--~siH~HG~~~ 89 (591)
+....|.++.++|+++|. ..++ +..|+....| ++|+++..+.|+|++||+|++++.|.-+.+ ..+++||+
T Consensus 15 ~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi-- 92 (135)
T TIGR03096 15 LLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI-- 92 (135)
T ss_pred hhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc--
Confidence 334444555689999998 5444 4678887777 999999999999999999999999986543 34444442
Q ss_pred CCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhh
Q 007735 90 RRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHF 132 (591)
Q Consensus 90 ~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 132 (591)
+..|+||++.+|+|++ +++|+|||||-.+.
T Consensus 93 ------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP 122 (135)
T TIGR03096 93 ------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHP 122 (135)
T ss_pred ------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCC
Confidence 2468999999999998 79999999998653
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.19 E-value=7.1e-10 Score=121.53 Aligned_cols=230 Identities=15% Similarity=0.108 Sum_probs=140.8
Q ss_pred eEEEEECCCCCCCcEEeeCCCEEEEEEEECCC-CCceeee-cCccCCCCCCCCCCCC------CCCccCCCCcEEEEEEe
Q 007735 46 QQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHW-SGIQQRRSSWQDGLLG------TNCPIPPKWNWTYQFQV 117 (591)
Q Consensus 46 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DGv~~------tq~~I~PG~~~~Y~f~~ 117 (591)
...+++||+. .|.+.+. |.++++|+.|... ....+.+ .|..+. --..||.+. ....|.|||+++..+++
T Consensus 212 gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~-vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~ 288 (523)
T PRK10965 212 GDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY-VIASDGGLLAEPVKVSELPILMGERFEVLVDT 288 (523)
T ss_pred CCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-EEEeCCCcccCccEeCeEEECccceEEEEEEc
Confidence 4578999995 7899885 6699999999964 4456665 454322 246898542 34669999999999998
Q ss_pred CCceeeeEEecChhhhhhcC------ceeeEEEecCC---CCCCCC-----C-CC------CCcceEEecccccCchHHH
Q 007735 118 KDQVGSFFYFPSLHFQRASG------GFGGFIINNRA---IIPIPF-----D-TP------DGDITILIGDWYTRNHTAL 176 (591)
Q Consensus 118 ~~~~Gt~wYH~H~~~q~~~G------l~G~liV~~~~---~~~~p~-----~-~~------d~e~~l~l~d~~~~~~~~~ 176 (591)
. +.|.++...-...+...+ -.-.+.|.... ....|- + .. .+.+.+.+..+.- ...+
T Consensus 289 ~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~m 365 (523)
T PRK10965 289 S-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLD--MMGM 365 (523)
T ss_pred C-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccc--hhhh
Confidence 5 567777665422111100 11123333111 101110 0 00 0122333222100 0000
Q ss_pred HH-----------H-----------------hhcCC--CCC---CCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCE
Q 007735 177 RK-----------T-----------------LDAGK--GLG---MPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKT 223 (591)
Q Consensus 177 ~~-----------~-----------------~~~~~--~~~---~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~ 223 (591)
.. . ++.+. ... ....++|||+.+. .+.+.++++.|++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~----------~~~~~~~~~~G~~ 435 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD----------MNKPMFAAKKGQY 435 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC----------CCCcceecCCCCE
Confidence 00 0 00000 000 0112489999862 2347789999999
Q ss_pred EEEEEeEeCCcceEEEEEeCCeeEEEeecCCcee---eeeeeEEEEccccEEEEEEEeCCCC---CcceEEEEeec
Q 007735 224 YRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTV---QQNYTSLDIHVGQSYSFLVTMDQNA---STDYYIVASAR 293 (591)
Q Consensus 224 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~---p~~~d~v~i~pGqR~dvlv~~~~~~---g~~y~i~~~~~ 293 (591)
.+|+|+|.+....|.|||||+.|+|++.||.+.. +...|+|.+.+ +++++++++++.+ | .|.++++.-
T Consensus 436 e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g-~~~~HCHiL 509 (523)
T PRK10965 436 ERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEH-AYMAHCHLL 509 (523)
T ss_pred EEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCC-CEEEEeCch
Confidence 9999999986557999999999999999998765 35689999976 8899999998543 5 788888764
No 26
>PRK10883 FtsI repressor; Provisional
Probab=99.11 E-value=2.7e-09 Score=115.79 Aligned_cols=222 Identities=12% Similarity=0.099 Sum_probs=133.6
Q ss_pred eeeEEEEECCCCCCCcEEeeCCCEEEEEEEECCC-CCceeee-cCccCCCCCCCCCCC----C--CCCccCCCCcEEEEE
Q 007735 44 VPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHW-SGIQQRRSSWQDGLL----G--TNCPIPPKWNWTYQF 115 (591)
Q Consensus 44 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DGv~----~--tq~~I~PG~~~~Y~f 115 (591)
....++++||+. .|.|.|+.| ++++|+.|... ....+++ +|.... --..||-+ . .+..|.||++++.-.
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~-vIa~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLH-VIAGDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEE-EEEeCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345679999995 799999875 89999999975 4567887 565332 24578532 1 346689999999999
Q ss_pred EeCCceeeeEEecChhhhhhcCceee------------EEEecCCCCCCCCCCCCCcceEEecccccCchHHHHH-Hhhc
Q 007735 116 QVKDQVGSFFYFPSLHFQRASGGFGG------------FIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRK-TLDA 182 (591)
Q Consensus 116 ~~~~~~Gt~wYH~H~~~q~~~Gl~G~------------liV~~~~~~~~p~~~~d~e~~l~l~d~~~~~~~~~~~-~~~~ 182 (591)
++. +.+.+.+++-......+++.+. +-++...... +. ....+..+...........+. .+.-
T Consensus 284 d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~~~~l 358 (471)
T PRK10883 284 DMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSREISL 358 (471)
T ss_pred ECC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceEEEEe
Confidence 984 5567777653211111111111 1111111000 00 000110000000000000000 0000
Q ss_pred CCCCCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceee---e
Q 007735 183 GKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQ---Q 259 (591)
Q Consensus 183 ~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~ 259 (591)
+ .+.++|||+.+. ...+.++++.|++++|+|.|. ..|+||||+|.|+|++.||....+ .
T Consensus 359 ~-----~~~~~INg~~~~----------~~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~g 420 (471)
T PRK10883 359 G-----DDLPGINGALWD----------MNRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDRG 420 (471)
T ss_pred c-----CCcCccCCcccC----------CCcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccccC
Confidence 0 123479999862 123457899999999999885 269999999999999999986543 4
Q ss_pred eeeEEEEccccEEEEEEEeCCCCCc--ceEEEEeec
Q 007735 260 NYTSLDIHVGQSYSFLVTMDQNAST--DYYIVASAR 293 (591)
Q Consensus 260 ~~d~v~i~pGqR~dvlv~~~~~~g~--~y~i~~~~~ 293 (591)
..|+|.+. +++++++++++.+++ .|.++++.-
T Consensus 421 wkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 421 WKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred cCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccc
Confidence 57999993 479999999976653 477777653
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.01 E-value=2.7e-08 Score=110.19 Aligned_cols=234 Identities=17% Similarity=0.144 Sum_probs=141.6
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEE-eecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA-ETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~i~p 268 (591)
..+++||+.. .|+|+++.|+++++++.|--.. ...+|.||....-- ..||..- +..-.|.|
T Consensus 23 ~~~~~NG~~P-------------GP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~~----vTq~pI~P 84 (539)
T TIGR03389 23 SILTVNGKFP-------------GPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPAY----ITQCPIQP 84 (539)
T ss_pred EEEEECCccc-------------CCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCcc----cccCCcCC
Confidence 4899999975 4999999999999999998654 45566666532211 2588652 23346899
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCc-----ccccccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDK-----TFSMNQARSIR 343 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~-----~~~~~~~~~~~ 343 (591)
|+.+...+++.+.+| .||.+.+...... .+.+ +++...... .+.|.. ....+. +|.......+.
T Consensus 85 G~s~~Y~f~~~~~~G-T~WYHsH~~~~~~----Gl~G-~lIV~~~~~----~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~ 153 (539)
T TIGR03389 85 GQSYVYNFTITGQRG-TLWWHAHISWLRA----TVYG-AIVILPKPG----VPYPFP-KPDREVPIILGEWWNADVEAVI 153 (539)
T ss_pred CCeEEEEEEecCCCe-eEEEecCchhhhc----cceE-EEEEcCCCC----CCCCCC-CCCceEEEEecccccCCHHHHH
Confidence 999999999865688 9999998642111 1222 233322111 111110 000000 11100000000
Q ss_pred cccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCCC
Q 007735 344 WNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTG 423 (591)
Q Consensus 344 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 423 (591)
... +.... ...-...+.|||+...... + . +
T Consensus 154 ~~~-------------------------~~~~~--~~~~~d~~liNG~~~~~~~---------------~-~----~--- 183 (539)
T TIGR03389 154 NQA-------------------------NQTGG--APNVSDAYTINGHPGPLYN---------------C-S----S--- 183 (539)
T ss_pred HHH-------------------------HhcCC--CCCccceEEECCCcCCCCC---------------C-C----C---
Confidence 000 00000 0000113667776421000 0 0 0
Q ss_pred CCCcceEEEeccCCcEEEEEEecCCC-cceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEE
Q 007735 424 PPRMETSVINGTYRGFMEVILQNNDT-KMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILV 502 (591)
Q Consensus 424 ~~~~~~~v~~~~~g~~ve~vl~N~~~-~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf 502 (591)
....+++++.|+++.+.|.|.+. ..+.|||+||.|+||+.++. + ..|...|++.|.+|+.+.|.+
T Consensus 184 ---~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~-~----------~~P~~~~~l~i~~GqRydVlv 249 (539)
T TIGR03389 184 ---KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDAT-Y----------TKPFKTKTIVIGPGQTTNVLL 249 (539)
T ss_pred ---CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCc-c----------cCceEeCeEEecCCCEEEEEE
Confidence 01246788899999999999874 46899999999999999743 1 247778999999999999999
Q ss_pred EeCC-ccceeeeccc
Q 007735 503 SLDN-VGIWNLRTEN 516 (591)
Q Consensus 503 ~adN-pG~W~~HCHi 516 (591)
.+++ +|.|.++-+.
T Consensus 250 ~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 250 TADQSPGRYFMAARP 264 (539)
T ss_pred ECCCCCceEEEEEec
Confidence 9986 8999887654
No 28
>PLN02835 oxidoreductase
Probab=98.97 E-value=3.6e-08 Score=108.60 Aligned_cols=218 Identities=14% Similarity=0.156 Sum_probs=134.0
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEE-EeecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLL-AETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. .|+|++++|+++++++.|.-.. ...+|.||..+.- -..||.+. ..-.|.|
T Consensus 49 ~~~~~NG~~P-------------GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~P 109 (539)
T PLN02835 49 QVILINGQFP-------------GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPP 109 (539)
T ss_pred EEEEECCcCC-------------CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCC
Confidence 4799999975 4999999999999999998654 4556666654432 24699653 1347999
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcc-------cccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKT-------FSMNQARS 341 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~-------~~~~~~~~ 341 (591)
|+.+...+++.+.+| .||.+++...-.. ..+.+.-|++ .... .+.|. +. ++.+ |.......
T Consensus 110 G~sf~Y~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G~lIV~-~~~~----~~~p~-~~--~d~e~~l~l~Dw~~~~~~~ 177 (539)
T PLN02835 110 NSNYTYKFQTKDQIG-TFTYFPSTLFHKA---AGGFGAINVY-ERPR----IPIPF-PL--PDGDFTLLVGDWYKTSHKT 177 (539)
T ss_pred CCcEEEEEEECCCCE-eEEEEeCccchhc---CcccceeEEe-CCCC----CCcCC-CC--CCceEEEEeeccccCCHHH
Confidence 999999998765678 9999987532100 1122222332 2111 11110 00 0111 11000000
Q ss_pred cccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCC
Q 007735 342 IRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPV 421 (591)
Q Consensus 342 ~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~ 421 (591)
+...+..+. ... . .....|||+..
T Consensus 178 ~~~~~~~g~------------------------~~~-~---~d~~liNG~~~---------------------------- 201 (539)
T PLN02835 178 LQQRLDSGK------------------------VLP-F---PDGVLINGQTQ---------------------------- 201 (539)
T ss_pred HHHHhhcCC------------------------CCC-C---CceEEEccccC----------------------------
Confidence 000000000 000 0 01244555421
Q ss_pred CCCCCcceEEEeccCCcEEEEEEecCCCc-ceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEE
Q 007735 422 TGPPRMETSVINGTYRGFMEVILQNNDTK-MHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAI 500 (591)
Q Consensus 422 ~~~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~i 500 (591)
..+.++.|+++.|.|.|.+.. ..-||+.||+|.||+.++... .|...|++.+.+|+...+
T Consensus 202 --------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydv 262 (539)
T PLN02835 202 --------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAV 262 (539)
T ss_pred --------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEE
Confidence 124567899999999998754 799999999999999975322 255689999999999999
Q ss_pred EEEeCC-ccceeee
Q 007735 501 LVSLDN-VGIWNLR 513 (591)
Q Consensus 501 rf~adN-pG~W~~H 513 (591)
.++++. +|.|-++
T Consensus 263 lv~~~~~~g~y~i~ 276 (539)
T PLN02835 263 LVTLNQSPKDYYIV 276 (539)
T ss_pred EEEcCCCCCcEEEE
Confidence 999875 6877766
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=98.90 E-value=9.1e-08 Score=105.62 Aligned_cols=228 Identities=14% Similarity=0.130 Sum_probs=138.6
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEE-EeecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLL-AETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. .|+|+++.|+++++++.|.-.. ...+|.||..+.- -..||.+. ..-.|.|
T Consensus 47 ~~~~iNGq~P-------------GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~P 107 (552)
T PLN02354 47 QVILINGQFP-------------GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPP 107 (552)
T ss_pred EEEEECCCCc-------------CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCC
Confidence 4899999975 4999999999999999998643 4456666654332 24799652 2347999
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCC-CCCCCcCc-----cccccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPE-GPNDEFDK-----TFSMNQARSI 342 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~-----~~~~~~~~~~ 342 (591)
|+.+...+++++.+| .||.+++...-.. ..+.+ +++-..... .+.|- .+.. +. +|.......+
T Consensus 108 G~sf~Y~F~~~~q~G-T~WYHsH~~~Q~~---~Gl~G-~lII~~~~~----~~~p~~~~d~--e~~l~l~Dw~~~~~~~~ 176 (552)
T PLN02354 108 GTNFTYHFQPKDQIG-SYFYYPSTGMHRA---AGGFG-GLRVNSRLL----IPVPYADPED--DYTVLIGDWYTKSHTAL 176 (552)
T ss_pred CCcEEEEEEeCCCCc-ceEEecCccceec---CCccc-eEEEcCCcC----CCCCCCCcCc--eEEEEeeeeccCCHHHH
Confidence 999999999865678 9999987532110 01222 233222110 11110 0000 10 1111000000
Q ss_pred ccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCC
Q 007735 343 RWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVT 422 (591)
Q Consensus 343 ~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~ 422 (591)
...+... . .........|||+.... +
T Consensus 177 ~~~~~~g------------------------~----~~~~~d~~liNG~~~~~----------------~---------- 202 (552)
T PLN02354 177 KKFLDSG------------------------R----TLGRPDGVLINGKSGKG----------------D---------- 202 (552)
T ss_pred HHHHhcC------------------------C----CCCCCCeEEEeCCcCCC----------------C----------
Confidence 0000000 0 00001235667653110 0
Q ss_pred CCCCcceEEEeccCCcEEEEEEecCCCc-ceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEE
Q 007735 423 GPPRMETSVINGTYRGFMEVILQNNDTK-MHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAIL 501 (591)
Q Consensus 423 ~~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~ir 501 (591)
......++++.|+++.|.|.|.+.. ..-||+.||+|.||+.++... .|...|++.|.+|+...+.
T Consensus 203 ---~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 203 ---GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred ---CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEE
Confidence 0023457788999999999998754 789999999999999975322 2455799999999999999
Q ss_pred EEeCC-ccceeeecc
Q 007735 502 VSLDN-VGIWNLRTE 515 (591)
Q Consensus 502 f~adN-pG~W~~HCH 515 (591)
+++++ +|.|-++-.
T Consensus 269 v~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 269 VTANQAPKDYYMVAS 283 (552)
T ss_pred EECCCCCCcEEEEEe
Confidence 99985 798877765
No 30
>PLN02792 oxidoreductase
Probab=98.88 E-value=1.2e-07 Score=104.30 Aligned_cols=222 Identities=16% Similarity=0.215 Sum_probs=134.0
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEe---ecCCceeeeeeeEEEE
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAE---TEGSYTVQQNYTSLDI 266 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG~~~~p~~~d~v~i 266 (591)
..++|||+.. .|+|++++|+++++++.|--.. ...+|.|| +.+.. .||.+. ..-.|
T Consensus 36 ~~~~vNGq~P-------------GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHG--l~q~~~~~~DGv~~-----tqcPI 94 (536)
T PLN02792 36 RGILINGQFP-------------GPEIRSLTNDNLVINVHNDLDE-PFLLSWNG--VHMRKNSYQDGVYG-----TTCPI 94 (536)
T ss_pred EEEEECCCCC-------------CCcEEEECCCEEEEEEEeCCCC-CcCEeCCC--cccCCCCccCCCCC-----CcCcc
Confidence 4799999975 4999999999999999998653 34444444 44443 799643 12579
Q ss_pred ccccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCc-----ccccccccc
Q 007735 267 HVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDK-----TFSMNQARS 341 (591)
Q Consensus 267 ~pGqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~-----~~~~~~~~~ 341 (591)
.||+.+...+++++.+| .||.+++...... ..+.+ +++-+.....+ .+++. +.. +. +|.......
T Consensus 95 ~PG~sftY~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G-~liI~~~~~~~--~p~~~-~d~--e~~i~l~Dw~~~~~~~ 164 (536)
T PLN02792 95 PPGKNYTYDFQVKDQVG-SYFYFPSLAVQKA---AGGYG-SLRIYSLPRIP--VPFPE-PAG--DFTFLIGDWYRRNHTT 164 (536)
T ss_pred CCCCcEEEEEEeCCCcc-ceEEecCcchhhh---ccccc-ceEEeCCcccC--cCCCc-ccc--eeEEEecccccCCHHH
Confidence 99999999999865688 9999998642110 01222 23233211100 11110 000 10 111000000
Q ss_pred cccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCC
Q 007735 342 IRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPV 421 (591)
Q Consensus 342 ~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~ 421 (591)
+...+.. ... ...-.....|||+...
T Consensus 165 ~~~~~~~------------------------g~~---~~~~~d~~liNG~~~~--------------------------- 190 (536)
T PLN02792 165 LKKILDG------------------------GRK---LPLMPDGVMINGQGVS--------------------------- 190 (536)
T ss_pred HHHHhhc------------------------cCc---CCCCCCEEEEeccCCC---------------------------
Confidence 0000000 000 0000113556654210
Q ss_pred CCCCCcceEEEeccCCcEEEEEEecCCCc-ceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEE
Q 007735 422 TGPPRMETSVINGTYRGFMEVILQNNDTK-MHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAI 500 (591)
Q Consensus 422 ~~~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~i 500 (591)
....+.++.|+++.|.|.|.+.. ..-|++.||+|.||+.++... .|...|++.|.+|+.+.+
T Consensus 191 ------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydV 253 (536)
T PLN02792 191 ------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSV 253 (536)
T ss_pred ------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEE
Confidence 01346678899999999998755 689999999999999975422 355679999999999999
Q ss_pred EEEeCC-ccceeee
Q 007735 501 LVSLDN-VGIWNLR 513 (591)
Q Consensus 501 rf~adN-pG~W~~H 513 (591)
.++++. +|.|-+.
T Consensus 254 lV~a~~~~g~Y~i~ 267 (536)
T PLN02792 254 LVTMDQPPQNYSIV 267 (536)
T ss_pred EEEcCCCCceEEEE
Confidence 999976 5776665
No 31
>PLN02991 oxidoreductase
Probab=98.87 E-value=1.1e-07 Score=104.55 Aligned_cols=219 Identities=17% Similarity=0.189 Sum_probs=133.8
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeE-EEeecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLL-LAETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~-via~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. -|.|+++.|+++++++.|.-.. ...+|.||..+. --..||.+. ..-.|.|
T Consensus 48 ~~~~vNG~~P-------------GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~P 108 (543)
T PLN02991 48 QGILINGKFP-------------GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG-----TTCPIPP 108 (543)
T ss_pred EEEEEcCCCC-------------CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC-----CCCccCC
Confidence 4799999975 4999999999999999998643 455666665532 134799642 2347999
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCC-CCCCcCc-----cccccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEG-PNDEFDK-----TFSMNQARSI 342 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~-----~~~~~~~~~~ 342 (591)
|+++...+++++.+| +||.+++...... ..+.+ +++-..... .+.|.. +.. +. +|.......+
T Consensus 109 G~sftY~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G-~lIV~~~~~----~~~p~~~~d~--d~~i~l~DW~~~~~~~~ 177 (543)
T PLN02991 109 GKNYTYALQVKDQIG-SFYYFPSLGFHKA---AGGFG-AIRISSRPL----IPVPFPAPAD--DYTVLIGDWYKTNHKDL 177 (543)
T ss_pred CCcEEEEEEeCCCCc-ceEEecCcchhhh---CCCee-eEEEeCCcc----cCcccccccc--eeEEEecceecCCHHHH
Confidence 999999999965688 9999998642110 11222 333322111 111110 000 10 1111000000
Q ss_pred ccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCC
Q 007735 343 RWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVT 422 (591)
Q Consensus 343 ~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~ 422 (591)
...+.. .. ...-.....|||+..
T Consensus 178 ~~~~~~------------------------~~----~~~~~d~~liNG~~~----------------------------- 200 (543)
T PLN02991 178 RAQLDN------------------------GG----KLPLPDGILINGRGS----------------------------- 200 (543)
T ss_pred HHHhhc------------------------CC----CCCCCCEEEEccCCC-----------------------------
Confidence 000000 00 000001244555421
Q ss_pred CCCCcceEEEeccCCcEEEEEEecCCCc-ceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEE
Q 007735 423 GPPRMETSVINGTYRGFMEVILQNNDTK-MHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAIL 501 (591)
Q Consensus 423 ~~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~ir 501 (591)
...++++.|+++.+.|.|.+.. .+-|+|.||+|+||+.++.. ..|...|++.|.+|+...+.
T Consensus 201 ------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvl 263 (543)
T PLN02991 201 ------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVL 263 (543)
T ss_pred ------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEE
Confidence 1235677899999999998765 68999999999999996432 23667899999999999999
Q ss_pred EEeCCc-cceee
Q 007735 502 VSLDNV-GIWNL 512 (591)
Q Consensus 502 f~adNp-G~W~~ 512 (591)
+.+|++ |.+-+
T Consensus 264 v~a~~~~~~y~i 275 (543)
T PLN02991 264 ITADQPAKDYYI 275 (543)
T ss_pred EECCCCCCcEEE
Confidence 999874 64433
No 32
>PLN02168 copper ion binding / pectinesterase
Probab=98.84 E-value=2.3e-07 Score=102.11 Aligned_cols=220 Identities=13% Similarity=0.169 Sum_probs=129.9
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEE-eecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA-ETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. .|+|+++.|+++++++.|--.. ...+|.||..+.-- ..||.+- ..-.|.|
T Consensus 46 ~~~~vNG~~P-------------GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~P 106 (545)
T PLN02168 46 QVIVINDMFP-------------GPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILP 106 (545)
T ss_pred EEEEECCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCC
Confidence 4789999975 4999999999999999998754 45666666543221 2599653 2247999
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCccccccccccccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARSIRWNVSA 348 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~l~~ 348 (591)
|+++...+++++.+| .||.+.+...-.. ..+.+ +++-..... ...+.+ .+.. +....+.+ |....
T Consensus 107 G~sftY~F~~~~q~G-T~WYHsH~~~Q~~---~GL~G-~lII~~~~~--~~~p~~-~~d~--e~~l~l~D-----w~~~~ 171 (545)
T PLN02168 107 GTNWTYRFQVKDQIG-SYFYFPSLLLQKA---AGGYG-AIRIYNPEL--VPVPFP-KPDE--EYDILIGD-----WFYAD 171 (545)
T ss_pred CCcEEEEEEeCCCCc-eEEEecChhhhhh---Cccee-EEEEcCCcc--cCcCcC-cccc--eeeEEEEe-----cCCCC
Confidence 999999999965688 9999987542110 11222 233322111 001111 0100 10000000 00000
Q ss_pred CCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCCCCCCcc
Q 007735 349 SGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPRME 428 (591)
Q Consensus 349 ~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~ 428 (591)
. . ..... +.... .........|||+.- .
T Consensus 172 ~------~--------~~~~~--~~~g~--~~~~~d~~liNG~~~----------------------------------~ 199 (545)
T PLN02168 172 H------T--------VMRAS--LDNGH--SLPNPDGILFNGRGP----------------------------------E 199 (545)
T ss_pred H------H--------HHHhh--hhcCC--CCCCCCEEEEeccCC----------------------------------C
Confidence 0 0 00000 00000 000001245555420 0
Q ss_pred eEEEeccCCcEEEEEEecCCCc-ceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCC
Q 007735 429 TSVINGTYRGFMEVILQNNDTK-MHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDN 506 (591)
Q Consensus 429 ~~v~~~~~g~~ve~vl~N~~~~-~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adN 506 (591)
...++++.|+++.|.|.|.+.. .+.|++.||+|+|++.++.. .+|...|++.+.+|+...+.+++++
T Consensus 200 ~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 200 ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTY-----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeE-----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 1245677899999999998754 68999999999999987532 2356679999999999999999974
No 33
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.81 E-value=1.2e-07 Score=103.25 Aligned_cols=232 Identities=14% Similarity=0.055 Sum_probs=143.8
Q ss_pred CeeeEEEEECCCCCCCcEEeeCCCEEEEEEEECC-CCCceeeecCccCCCCCCCCCCCC-----CCCccCCCCcEEEEEE
Q 007735 43 GVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKL-DESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQ 116 (591)
Q Consensus 43 G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~ 116 (591)
|.......+||+. -| +.+.++..+++|+.|.- .....+++.|..+.. -..||.+. .+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cc-eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4556677888853 34 45555666999999997 455666666555432 35677652 4567999999999999
Q ss_pred eCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCCCCCCCcceEEecc-cccCchHHHHHHh-hcC----C-----C
Q 007735 117 VKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGD-WYTRNHTALRKTL-DAG----K-----G 185 (591)
Q Consensus 117 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~~d~e~~l~l~d-~~~~~~~~~~~~~-~~~----~-----~ 185 (591)
.+ ..|++=+.|.. .+..+-+.+..-....... ++...+.+......| +...........+ +.+ . .
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILTP--SYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeecccccccc--ccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 85 47888888876 2222223333222211110 110111111111111 0000000000000 011 0 0
Q ss_pred CCCCceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCce--eeeeeeE
Q 007735 186 LGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYT--VQQNYTS 263 (591)
Q Consensus 186 ~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~--~p~~~d~ 263 (591)
.-....+.+||+.+. .+...+.++.|+++||++.|-+. -.|.||+||+.|+|++.|...- .+...|+
T Consensus 339 ~~~~~~~~~n~~~~~----------~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDT 407 (451)
T COG2132 339 GIGGYVWAINGKAFD----------DNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDT 407 (451)
T ss_pred ccccccccccCccCC----------CCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceE
Confidence 012346889998872 12578899999999999999987 5899999999999999992211 2467899
Q ss_pred EEEccccEEEEEEEeCCCCCcceEEEEeecc
Q 007735 264 LDIHVGQSYSFLVTMDQNASTDYYIVASARF 294 (591)
Q Consensus 264 v~i~pGqR~dvlv~~~~~~g~~y~i~~~~~~ 294 (591)
+.+.+++|+.+.++++ .+| .|.++++...
T Consensus 408 v~v~~~~~~~v~~~a~-~~g-~~~~HCH~l~ 436 (451)
T COG2132 408 VLVAPGERLLVRFDAD-YPG-PWMFHCHILE 436 (451)
T ss_pred EEeCCCeEEEEEEeCC-CCC-ceEEeccchh
Confidence 9999999999999999 456 8989887643
No 34
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.81 E-value=6.5e-09 Score=94.16 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=73.1
Q ss_pred CCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCC-------------CC--CCCccCCCCcEEEEEEeCCce
Q 007735 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGL-------------LG--TNCPIPPKWNWTYQFQVKDQV 121 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv-------------~~--tq~~I~PG~~~~Y~f~~~~~~ 121 (591)
.+.++++.|+.+++.+.|.......+|+||..+......++. ++ .-..|+||+..+.+|++ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 578999999999999999999999999999977422111111 11 12458999999999999 689
Q ss_pred eeeEEecChhhhhhcCceeeEEEec
Q 007735 122 GSFFYFPSLHFQRASGGFGGFIINN 146 (591)
Q Consensus 122 Gt~wYH~H~~~q~~~Gl~G~liV~~ 146 (591)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999976
No 35
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.77 E-value=4.3e-07 Score=100.55 Aligned_cols=233 Identities=13% Similarity=0.132 Sum_probs=137.0
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEE-eecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA-ETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. -|+|+++.|+++++++.|--.. ...+|.||..+.-- ..||... ..-.|.|
T Consensus 49 ~vi~vNGq~P-------------GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~P 109 (596)
T PLN00044 49 EAIGINGQFP-------------GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPA 109 (596)
T ss_pred EEEEEcCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCC
Confidence 4799999975 4999999999999999998654 56677777654432 4799642 3358999
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCc-----ccccccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDK-----TFSMNQARSIR 343 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~-----~~~~~~~~~~~ 343 (591)
|+++...+++++.+| .||.+++...-.. ..+. .+++-+..... ..|.+. +.. .+. +|...+...+.
T Consensus 110 G~sftY~F~~~dq~G-T~WYHsH~~~Q~~---~Gl~-GalII~~~~~~--~~P~~~-~~~-~e~~i~l~DW~~~~~~~~~ 180 (596)
T PLN00044 110 GWNWTYQFQVKDQVG-SFFYAPSTALHRA---AGGY-GAITINNRDVI--PIPFGF-PDG-GDITLFIADWYARDHRALR 180 (596)
T ss_pred CCcEEEEEEeCCCCc-eeEeeccchhhhh---CcCe-eEEEEcCcccc--cccccC-Ccc-cceEEEecccccCCHHHHH
Confidence 999999999965688 9999997642111 0122 23333321110 011110 000 011 11111100000
Q ss_pred cccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCCC
Q 007735 344 WNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTG 423 (591)
Q Consensus 344 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 423 (591)
..+..+...+ .. ....|||..-...+ +.. . + +
T Consensus 181 ~~l~~g~~~~-------------------------~~---d~~lING~g~~~~n------------~~~---~---~-~- 212 (596)
T PLN00044 181 RALDAGDLLG-------------------------AP---DGVLINAFGPYQYN------------DSL---V---P-P- 212 (596)
T ss_pred HHHhcCCCCC-------------------------CC---CceEEcccCccccC------------Ccc---c---c-C-
Confidence 0000000000 00 01234443110000 000 0 0 0
Q ss_pred CCCcceEEEeccCCcEEEEEEecCCC-cceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEE
Q 007735 424 PPRMETSVINGTYRGFMEVILQNNDT-KMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILV 502 (591)
Q Consensus 424 ~~~~~~~v~~~~~g~~ve~vl~N~~~-~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf 502 (591)
.....++.++.|+++.|.|.|.+. ...-|+|.||+|.||+.++. + .+|..-|++.|.+|+...+.+
T Consensus 213 --~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~-~----------v~P~~vd~i~I~~GQRydVLV 279 (596)
T PLN00044 213 --GITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGS-Y----------TSQQNYTNLDIHVGQSYSFLL 279 (596)
T ss_pred --CCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCc-c----------cCceeeeeEEEcCCceEEEEE
Confidence 001236788999999999999874 46789999999999999742 2 247778999999999999999
Q ss_pred EeCCc-c--cee
Q 007735 503 SLDNV-G--IWN 511 (591)
Q Consensus 503 ~adNp-G--~W~ 511 (591)
++|.+ | -|+
T Consensus 280 ~a~q~~~~~Y~i 291 (596)
T PLN00044 280 TMDQNASTDYYV 291 (596)
T ss_pred ECCCCCCCceEE
Confidence 99875 5 365
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.76 E-value=6.2e-07 Score=99.25 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=142.2
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEE-EeecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLL-AETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. .|+|+++.|+++++++.|.-......+|.||..+.- -..||.+.. ..-.|.|
T Consensus 28 ~~~~~NG~~P-------------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~P 90 (538)
T TIGR03390 28 YSVVVNGTSP-------------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPP 90 (538)
T ss_pred EEEEECCcCC-------------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCC
Confidence 4899999975 499999999999999999754345567777765432 247997742 2235889
Q ss_pred ccEEEEEEEeC-CCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcc-------ccccccc
Q 007735 269 GQSYSFLVTMD-QNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKT-------FSMNQAR 340 (591)
Q Consensus 269 GqR~dvlv~~~-~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~-------~~~~~~~ 340 (591)
|+.+...++++ +.+| .||.+.+... +. .. ..+.|...... ..+. . +|.+ |......
T Consensus 91 G~sf~Y~f~~~~~q~G-T~WYHsH~~~--Q~--~~--l~G~lIV~~~~---~~~~----~--~d~e~~l~l~Dw~~~~~~ 154 (538)
T TIGR03390 91 GHFFDYEIKPEPGDAG-SYFYHSHVGF--QA--VT--AFGPLIVEDCE---PPPY----K--YDDERILLVSDFFSATDE 154 (538)
T ss_pred CCcEEEEEEecCCCCe-eeEEecCCch--hh--hc--ceeEEEEccCC---ccCC----C--ccCcEEEEEeCCCCCCHH
Confidence 99999999875 3678 9999988632 21 11 33333333221 0011 0 1111 1111000
Q ss_pred ccccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCC
Q 007735 341 SIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKP 420 (591)
Q Consensus 341 ~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p 420 (591)
.+...+. ..... .........|||+......... ..+
T Consensus 155 ~~~~~~~-------------------------~~~~~-~~~~~d~~liNG~~~~~~~~~~-------~~~---------- 191 (538)
T TIGR03390 155 EIEQGLL-------------------------STPFT-WSGETEAVLLNGKSGNKSFYAQ-------INP---------- 191 (538)
T ss_pred HHHhhhh-------------------------ccCCc-cCCCCceEEECCcccccccccc-------ccC----------
Confidence 0000000 00000 0001124667776321100000 000
Q ss_pred CCCCCCcceEEEeccCCcEEEEEEecCCCc-ceeeeecCce-EEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEE
Q 007735 421 VTGPPRMETSVINGTYRGFMEVILQNNDTK-MHAYHMSGYA-FFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWT 498 (591)
Q Consensus 421 ~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HPfHlHG~~-F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~ 498 (591)
...| ....+.++.|+++.|.|.|.+.. ..-|+|.||. |+||+.++. +..|...|++.|.+|+..
T Consensus 192 --~~~~-~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRy 257 (538)
T TIGR03390 192 --SGSC-MLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRY 257 (538)
T ss_pred --CCCC-cceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEE
Confidence 0011 13567889999999999998765 6899999999 999999753 235778899999999999
Q ss_pred EEEEEeCCc--------cceeeecc
Q 007735 499 AILVSLDNV--------GIWNLRTE 515 (591)
Q Consensus 499 ~irf~adNp--------G~W~~HCH 515 (591)
.|.++++++ |.|.++--
T Consensus 258 dVlv~~~~~~~~~~~~~~~Y~ir~~ 282 (538)
T TIGR03390 258 SVLFKAKTEDELCGGDKRQYFIQFE 282 (538)
T ss_pred EEEEECCCccccccCCCCcEEEEEe
Confidence 999999864 77766643
No 37
>PRK02710 plastocyanin; Provisional
Probab=98.73 E-value=2.2e-07 Score=81.71 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=54.6
Q ss_pred CCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhc
Q 007735 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRAS 136 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 136 (591)
.+.|++++||+| +++|.-..++++.+.|. ++...+...+.||++++|.|+. +|+|-|+|- .+...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~--------~~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGA--------KELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCC--------ccccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 478999999985 55677556777765542 1111123458999999998874 899999998 56668
Q ss_pred CceeeEEEe
Q 007735 137 GGFGGFIIN 145 (591)
Q Consensus 137 Gl~G~liV~ 145 (591)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 38
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.64 E-value=2.7e-06 Score=94.46 Aligned_cols=256 Identities=14% Similarity=0.217 Sum_probs=139.3
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEE-EeecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLL-AETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. .|+|++++|+++++++.|........+|.||+...- -..||..- +..-.|.|
T Consensus 21 ~~~~~Ng~~p-------------GP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~P 83 (541)
T TIGR03388 21 LVIGINGQFP-------------GPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINP 83 (541)
T ss_pred eEEEECCcCC-------------CCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCC
Confidence 4799999975 499999999999999999865446788888875321 12588642 23457899
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCccccccccccccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARSIRWNVSA 348 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~l~~ 348 (591)
|+++...+++++ +| .||.+.+...-.. ..+.+ +++... ... ...+.. +|.+..+ ...+ |....
T Consensus 84 G~s~~y~f~~~~-~G-t~wyH~H~~~q~~---~Gl~G-~liV~~-~~~-~~~p~~------~d~e~~l-~l~D--w~~~~ 146 (541)
T TIGR03388 84 GETFIYNFVVDR-PG-TYFYHGHYGMQRS---AGLYG-SLIVDV-PDG-EKEPFH------YDGEFNL-LLSD--WWHKS 146 (541)
T ss_pred CCEEEEEEEcCC-CE-EEEEEecchHHhh---ccceE-EEEEec-CCC-CCCCcc------ccceEEE-Eeec--ccCCC
Confidence 999999999974 78 9999987532110 11222 233222 110 001111 1111100 0000 00000
Q ss_pred CCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCCCCCCcc
Q 007735 349 SGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPRME 428 (591)
Q Consensus 349 ~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~ 428 (591)
. . +... .+...............|||+-...-......... ..+.+. ..+.....
T Consensus 147 ~------~--------~~~~--~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~ 201 (541)
T TIGR03388 147 I------H--------EQEV--GLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSST--NLPQCN-------LKGNEQCA 201 (541)
T ss_pred H------H--------HHHh--hcccCCCcCCCCCcceEECCCCCCCCccccccCcc--ccchhh-------ccCCCCCC
Confidence 0 0 0000 00000000000011235565421100000000000 000000 00000011
Q ss_pred eEEEeccCCcEEEEEEecCCC-cceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCC-
Q 007735 429 TSVINGTYRGFMEVILQNNDT-KMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDN- 506 (591)
Q Consensus 429 ~~v~~~~~g~~ve~vl~N~~~-~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adN- 506 (591)
..++.++.|+++.|.|.|.+. ..+-|+++||+|+||+.+++. ..|..-|.+.|.+|+.+.+.++++.
T Consensus 202 ~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~-----------v~P~~v~~l~i~~GqR~dvlv~~~~~ 270 (541)
T TIGR03388 202 PQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNY-----------VEPFTVKDIDIYSGETYSVLLTTDQD 270 (541)
T ss_pred ceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEe-----------cccceeCeEEecCCCEEEEEEeCCCC
Confidence 235788899999999999874 589999999999999997542 2467789999999999999999975
Q ss_pred cc-ceeeecc
Q 007735 507 VG-IWNLRTE 515 (591)
Q Consensus 507 pG-~W~~HCH 515 (591)
|| .|-++--
T Consensus 271 ~~~~y~ira~ 280 (541)
T TIGR03388 271 PSRNYWISVG 280 (541)
T ss_pred CCCcEEEEEe
Confidence 44 5666643
No 39
>PLN02604 oxidoreductase
Probab=98.63 E-value=4.9e-08 Score=108.57 Aligned_cols=89 Identities=22% Similarity=0.209 Sum_probs=69.9
Q ss_pred EeccCCcEEEEEEecCC-CcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccce
Q 007735 432 INGTYRGFMEVILQNND-TKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIW 510 (591)
Q Consensus 432 ~~~~~g~~ve~vl~N~~-~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W 510 (591)
+.++.|+++++.+.|.. ...|++|+||... .+. .|... ........|+||+...++|+++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~DG---------~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFDG---------TEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---ccccC---------CCccccCccCCCCeEEEEEEcCCCEEE
Confidence 56778999999999985 5789999999942 110 11110 111234578999999999999999999
Q ss_pred eeecccccchhccceEEEEEecCC
Q 007735 511 NLRTENLDSWYLGQETYVRVVNPE 534 (591)
Q Consensus 511 ~~HCHil~H~~~GM~~~~~V~~p~ 534 (591)
.||||...|...||...+.|..++
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEecC
Confidence 999999999999999999998764
No 40
>PLN02191 L-ascorbate oxidase
Probab=98.55 E-value=3.1e-06 Score=94.21 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=137.3
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEE-EeecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLL-AETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+.. .|+|+++.|+++++++.|.-......+|.||....- -..||.+- +..-.|.|
T Consensus 43 ~v~~vNg~~p-------------GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~P 105 (574)
T PLN02191 43 AVMTVNGQFP-------------GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINP 105 (574)
T ss_pred eEEEECCcCC-------------CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCC
Confidence 5899999975 499999999999999999855445677777765421 12587653 22346999
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCcCcc-------cccccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKT-------FSMNQARS 341 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~-------~~~~~~~~ 341 (591)
|+.+...++++ .+| .||.+.+...-.. ..+.+ +++.. ....+. .+. . +|.+ |.......
T Consensus 106 G~s~~Y~f~~~-~~G-T~wYHsH~~~q~~---~Gl~G-~liV~-~~~~~~-~~~--~----~d~e~~l~l~Dw~~~~~~~ 171 (574)
T PLN02191 106 GETFTYKFTVE-KPG-THFYHGHYGMQRS---AGLYG-SLIVD-VAKGPK-ERL--R----YDGEFNLLLSDWWHESIPS 171 (574)
T ss_pred CCeEEEEEECC-CCe-EEEEeeCcHHHHh---CCCEE-EEEEc-cCCCCC-CCC--C----CCeeEEEeeeccccCChHH
Confidence 99999999997 478 9999988632110 11222 22322 211110 011 0 1111 11100000
Q ss_pred cccccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCC
Q 007735 342 IRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPV 421 (591)
Q Consensus 342 ~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~ 421 (591)
....+.. .+.. .........|||+.-...+....... ...+..+ ....
T Consensus 172 ~~~~~~~---~~~~-----------------------~~~~~d~~liNG~g~~~~~~~~~~~~--~~~~~~~----~~~~ 219 (574)
T PLN02191 172 QELGLSS---KPMR-----------------------WIGEAQSILINGRGQFNCSLAAQFSN--GTELPMC----TFKE 219 (574)
T ss_pred HHHhhcc---CCCC-----------------------cCCCCCceEECCCCCCCCcccccccC--Ccccccc----eecc
Confidence 0000000 0000 00001123455432110000000000 0000000 0000
Q ss_pred CCCCCcceEEEeccCCcEEEEEEecCCC-cceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEE
Q 007735 422 TGPPRMETSVINGTYRGFMEVILQNNDT-KMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAI 500 (591)
Q Consensus 422 ~~~~~~~~~v~~~~~g~~ve~vl~N~~~-~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~i 500 (591)
+ +.+ ...+++++.|+++.|.|.|.+. ..+-|++.||+|.||+.++.. ..|...|++.|.+|+...+
T Consensus 220 n-~~~-~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~-----------v~P~~v~~l~i~~GqRydV 286 (574)
T PLN02191 220 G-DQC-APQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNY-----------ITPFTTDDIDIYSGESYSV 286 (574)
T ss_pred C-CCC-CceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCee-----------ccceEeeeEEEcCCCeEEE
Confidence 0 001 1236889999999999999875 478999999999999997432 2477889999999999999
Q ss_pred EEEeCC-cc-ceeee
Q 007735 501 LVSLDN-VG-IWNLR 513 (591)
Q Consensus 501 rf~adN-pG-~W~~H 513 (591)
.++++. +| .+-++
T Consensus 287 lV~a~~~~~~~y~ir 301 (574)
T PLN02191 287 LLTTDQDPSQNYYIS 301 (574)
T ss_pred EEECCCCCCCCEEEE
Confidence 999986 44 44444
No 41
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.52 E-value=2.1e-07 Score=81.53 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=67.3
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCC-cc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDN-VG 508 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adN-pG 508 (591)
+++.++.|+.|++.+.|.....+.+|.||... ....|.+..+ ... .-.|.||+....+|.++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~-----~~~~~~DG~~--~~~-------~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQ-----PPSPWMDGVP--GVT-------QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBS-----TTGGGGSGGT--TTS-------GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeee-----eeeeecCCcc--ccc-------ceeEEeecceeeeEeeecccc
Confidence 45778899999999999988899999999763 1111111100 000 114788999999999988 99
Q ss_pred ceeeecccccchhccceEEEEEecC
Q 007735 509 IWNLRTENLDSWYLGQETYVRVVNP 533 (591)
Q Consensus 509 ~W~~HCHil~H~~~GM~~~~~V~~p 533 (591)
.|.||||...+...||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988767999999988765
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.35 E-value=1.3e-06 Score=75.08 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=46.8
Q ss_pred CCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhh
Q 007735 54 KFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQ 133 (591)
Q Consensus 54 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q 133 (591)
+|-...|+++.|+.|+|+++|.-...+.+...++.. ...|.||++.++.|+. +++|+|=|+|..+.
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~- 96 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFTP-LKPGEYEFYCTMHP- 96 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEEE--S-EEEEEB-SSS--
T ss_pred eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEcC-CCCEEEEEEcCCCC-
Confidence 443458999999999999999977766665555322 1468999999999986 68999999999765
Q ss_pred hhcCceeeEEE
Q 007735 134 RASGGFGGFII 144 (591)
Q Consensus 134 ~~~Gl~G~liV 144 (591)
. |.|-|+|
T Consensus 97 --~-m~G~liV 104 (104)
T PF13473_consen 97 --N-MKGTLIV 104 (104)
T ss_dssp --T-TB-----
T ss_pred --c-ceecccC
Confidence 2 6777765
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=7.4e-05 Score=82.16 Aligned_cols=223 Identities=18% Similarity=0.244 Sum_probs=135.2
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCee-EEEeecCCceeeeeeeEEEEcc
Q 007735 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNL-LLAETEGSYTVQQNYTSLDIHV 268 (591)
Q Consensus 190 ~~~lING~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~-~via~DG~~~~p~~~d~v~i~p 268 (591)
..++|||+-. -|.|.++.|+++.++++|-.. ..+.+|.+|... .--..||.++ ..=.|.|
T Consensus 48 ~vi~iNG~fP-------------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~P 108 (563)
T KOG1263|consen 48 QVITINGQFP-------------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQP 108 (563)
T ss_pred eeEeecCCCC-------------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCC
Confidence 4789999975 499999999999999999844 455566666432 2234599553 3346899
Q ss_pred ccEEEEEEEeCCCCCcceEEEEeecccccccCCCcceE-EEEEecCCCCCCCCCCCCCCCCCc---Ccccccc-cccccc
Q 007735 269 GQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGV-AILHYTNSKGKARGPLPEGPNDEF---DKTFSMN-QARSIR 343 (591)
Q Consensus 269 GqR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~-ail~y~~~~~~~~~~~p~~p~~~~---~~~~~~~-~~~~~~ 343 (591)
||.|-..++.++..| +||-+++...... .... +++-+.-...+ -|.+ .|..++ -.+|..+ ..+.++
T Consensus 109 g~~~tY~F~v~~q~G-T~~yh~h~~~~Ra-----~G~~G~liI~~~~~~p--~pf~-~pd~E~~ill~dW~~~~~~~~l~ 179 (563)
T KOG1263|consen 109 GENFTYRFTVKDQIG-TLWYHSHVSWQRA-----TGVFGALIINPRPGLP--VPFP-KPDKEFTILLGDWYKNLNHKNLK 179 (563)
T ss_pred CCeEEEEEEeCCcce-eEEEeeccccccc-----cCceeEEEEcCCccCC--CCCC-CCCceeEEEeEeeccccCHHHHH
Confidence 999999999997788 9999888754221 1123 33333211101 1111 111100 0012111 111111
Q ss_pred cccccCCCCCCCCCCCCcCccceeEEEEEecCCCcccCCeeEEEEcCeeccCCCCchhhhccccccccccCCCCCCCCCC
Q 007735 344 WNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTG 423 (591)
Q Consensus 344 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 423 (591)
..+..+...|.+ . ....|||.+-
T Consensus 180 ~~~~~~~~~p~~------------------------~---D~~~iNg~~g------------------------------ 202 (563)
T KOG1263|consen 180 NFLDRTGALPNP------------------------S---DGVLINGRSG------------------------------ 202 (563)
T ss_pred HhhccCCCCCCC------------------------C---CceEECCCCC------------------------------
Confidence 111111000100 0 1234555431
Q ss_pred CCCcceEEEeccCCcEEEEEEecCC--CcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEE
Q 007735 424 PPRMETSVINGTYRGFMEVILQNND--TKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAIL 501 (591)
Q Consensus 424 ~~~~~~~v~~~~~g~~ve~vl~N~~--~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~ir 501 (591)
..+.|+..++++.|+++.|.|.|.+ ...+ |.+-||...||+.++ .+ ..|.--|++.|.+|+...+.
T Consensus 203 ~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~-F~I~~H~ltvVe~Dg-~y----------~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 203 FLYNCTPTLTVEPGKTYRLRIINAGLNTSLN-FSIANHQLTVVEVDG-AY----------TKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred cccCceeEEEEcCCCEEEEEEEccccccceE-EEECCeEEEEEEecc-eE----------EeeeeeceEEEcCCcEEEEE
Confidence 1122467788999999999999976 3345 999999999999963 22 22566799999999999999
Q ss_pred EEeCC-ccc
Q 007735 502 VSLDN-VGI 509 (591)
Q Consensus 502 f~adN-pG~ 509 (591)
..+|. |+.
T Consensus 271 vtadq~~~~ 279 (563)
T KOG1263|consen 271 LTADQSPGD 279 (563)
T ss_pred EeCCCCCCc
Confidence 99986 453
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.20 E-value=6.5e-06 Score=69.96 Aligned_cols=84 Identities=13% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCC-CCCCCCCCC-CCCccCCCCcEEEEEEeCCceeeeEEecChhh
Q 007735 55 FPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRR-SSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHF 132 (591)
Q Consensus 55 ~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~-~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 132 (591)
|-...|++++||+| +++|.-..++++.++...... ....++... +...+.||+++++.|.. +|+|.|||. .
T Consensus 14 F~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~ 86 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--P 86 (99)
T ss_pred EeCCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--C
Confidence 33568999999986 555775566666655321110 000011111 23457899999998874 899999998 6
Q ss_pred hhhcCceeeEEEe
Q 007735 133 QRASGGFGGFIIN 145 (591)
Q Consensus 133 q~~~Gl~G~liV~ 145 (591)
+..+||.|.|+|+
T Consensus 87 H~~aGM~G~I~V~ 99 (99)
T TIGR02656 87 HRGAGMVGKITVE 99 (99)
T ss_pred ccccCCEEEEEEC
Confidence 7888999999985
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.03 E-value=2.3e-05 Score=72.81 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=77.9
Q ss_pred eEEEeccCCcEEEEEEecCCCc-ceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCC-
Q 007735 429 TSVINGTYRGFMEVILQNNDTK-MHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDN- 506 (591)
Q Consensus 429 ~~v~~~~~g~~ve~vl~N~~~~-~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adN- 506 (591)
...+.++.|+++.|.|.|.+.. .+.||++||+|+||+.++.. ..|...|++.+.+|+.+.+.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~-----------v~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVP-----------VEPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEE-----------EEEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccc-----------ccccccceEEeeCCeEEEEEEEeCCC
Confidence 3567788999999999998754 89999999999999996432 1277889999999999999999987
Q ss_pred ccceeeec----ccccchhccceEEEEEec
Q 007735 507 VGIWNLRT----ENLDSWYLGQETYVRVVN 532 (591)
Q Consensus 507 pG~W~~HC----Hil~H~~~GM~~~~~V~~ 532 (591)
+|.|.++| +...+...++.+.+.+.+
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 99999999 667788899988887653
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.79 E-value=8.9e-05 Score=81.29 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=68.4
Q ss_pred ecCCCeee--EEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEE
Q 007735 39 ASPLGVPQ--QVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQ 116 (591)
Q Consensus 39 ~~~dG~~~--~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~ 116 (591)
+..+|.+. .+....=.|--+.|+|++||.|.++++|.-...-.+ ||...... |+ +.-+.||++-+..|+
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~~dv~PG~t~svtF~ 604 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---NMEVAPQATASVTFT 604 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc---cEEEcCCceEEEEEE
Confidence 45677554 445556677667899999999999999952211111 56544221 11 245789999999999
Q ss_pred eCCceeeeEEecCh---hhhhhcCceeeEEEecC
Q 007735 117 VKDQVGSFFYFPSL---HFQRASGGFGGFIINNR 147 (591)
Q Consensus 117 ~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 147 (591)
+ +++|+|||||.. ..+ .+|.|-|+|+++
T Consensus 605 a-dkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 605 A-DKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred c-CCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 8 799999999995 233 389999999873
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.77 E-value=3.4e-05 Score=65.58 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=53.0
Q ss_pred CCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCC------C-CCCccCCCCcEEEEEEeCCceeeeEEe
Q 007735 55 FPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLL------G-TNCPIPPKWNWTYQFQVKDQVGSFFYF 127 (591)
Q Consensus 55 ~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~------~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH 127 (591)
|-.+.|++++||+|+ +.|.-..++++.+=- ..+..|.. . ....+.||+++++.|+ ++|+|.|+
T Consensus 14 F~P~~i~V~~G~tV~--~~n~~~~~Hnv~~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~ 83 (99)
T PF00127_consen 14 FDPSEITVKAGDTVT--FVNNDSMPHNVVFVA-----DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYY 83 (99)
T ss_dssp EESSEEEEETTEEEE--EEEESSSSBEEEEET-----TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEE
T ss_pred EeCCEEEECCCCEEE--EEECCCCCceEEEec-----ccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEE
Confidence 335789999999865 556544455544321 01111110 0 1234789999999998 58999999
Q ss_pred cChhhhhhcCceeeEEEe
Q 007735 128 PSLHFQRASGGFGGFIIN 145 (591)
Q Consensus 128 ~H~~~q~~~Gl~G~liV~ 145 (591)
|. - +...||.|.|+|+
T Consensus 84 C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 84 CT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp ET-T-TGGTTSEEEEEEE
T ss_pred cC-C-CcccCCEEEEEEC
Confidence 98 3 7888999999985
No 48
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.58 E-value=0.00035 Score=57.23 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCC-CCCccCCCCcEEEEEEeCCceeeeEEecChhhh
Q 007735 55 FPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQ 133 (591)
Q Consensus 55 ~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q 133 (591)
|-.+.|++++||+|. +.|.-..++++++..-. +|... ....+.||+++++.|+ ++|+|-|||-.+.
T Consensus 8 F~P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~-------~~~~~~~~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp- 74 (83)
T TIGR02657 8 YETPELHVKVGDTVT--WINREAMPHNVHFVAGV-------LGEAALKGPMMKKEQAYSLTFT---EAGTYDYHCTPHP- 74 (83)
T ss_pred EcCCEEEECCCCEEE--EEECCCCCccEEecCCC-------CccccccccccCCCCEEEEECC---CCEEEEEEcCCCC-
Confidence 335789999999975 57876567777765421 11110 1123577888877664 6899999998654
Q ss_pred hhcCceeeEEEe
Q 007735 134 RASGGFGGFIIN 145 (591)
Q Consensus 134 ~~~Gl~G~liV~ 145 (591)
+|.|.++|+
T Consensus 75 ---~M~G~v~V~ 83 (83)
T TIGR02657 75 ---FMRGKVVVE 83 (83)
T ss_pred ---CCeEEEEEC
Confidence 499999985
No 49
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.54 E-value=0.00028 Score=64.39 Aligned_cols=89 Identities=16% Similarity=0.063 Sum_probs=57.4
Q ss_pred EEEeccCCcEEEEEEecCCC-cceeeeecCceEEEEEEcCCCCCCCCCCCCCCC-CCCccceEEeCC---C--cEEEEEE
Q 007735 430 SVINGTYRGFMEVILQNNDT-KMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKW-DGIARTTTQVYP---G--AWTAILV 502 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~-~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~-~p~~rDTv~Vpp---~--g~~~irf 502 (591)
+.+.++.|+.|++++.|.+. ..|.|-||.+.- .+... + +.+ .|..-..-.+|+ | ++..+.|
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~--------~~~~~-p---~mdG~~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGP--------PYPYM-P---GMDGLGFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCC--------ccccc-c---ccCCCCccccCcccCCCCCCccceeEEEE
Confidence 34678899999999999865 567666653321 11000 0 000 011112222232 2 2467888
Q ss_pred EeCCccceeeecccccchhccceEEEEE
Q 007735 503 SLDNVGIWNLRTENLDSWYLGQETYVRV 530 (591)
Q Consensus 503 ~adNpG~W~~HCHil~H~~~GM~~~~~V 530 (591)
+++.+|.+.||||+..|...||-..+.|
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 8899999999999999999999998877
No 50
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.43 E-value=0.00043 Score=58.75 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=58.3
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
..+.++.|++|+|+ |.+...|.+.++...+.. +.. .....+..+++.+.||....+.|.. ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPA-----GVK--------ELAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCcc-----chh--------hhcccccccccccCCCCEEEEEeCC--CEE
Confidence 45778899999887 666778888775432211 000 0011233467788999998877654 999
Q ss_pred eeeecccccchhccceEEEEEe
Q 007735 510 WNLRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 510 W~~HCHil~H~~~GM~~~~~V~ 531 (591)
|.|||-. |..+||...+.|.
T Consensus 80 y~y~C~~--H~~aGM~G~I~V~ 99 (99)
T TIGR02656 80 YTFYCEP--HRGAGMVGKITVE 99 (99)
T ss_pred EEEEcCC--ccccCCEEEEEEC
Confidence 9999994 9999999999873
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.41 E-value=0.0011 Score=62.05 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=73.6
Q ss_pred EEEECCCCCC-CcEEeeCCCEEEEEEEECCCCCce--eeecCccC--CCCCCCCCCC----C------CCCccCCCCcEE
Q 007735 48 VIAINGKFPG-PTINVTTNNNVVVNVRNKLDESLL--IHWSGIQQ--RRSSWQDGLL----G------TNCPIPPKWNWT 112 (591)
Q Consensus 48 ~~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~s--iH~HG~~~--~~~~~~DGv~----~------tq~~I~PG~~~~ 112 (591)
.+-|||..-| ++|.+..|.+|.|+|+|.-.-+++ |=--+-.+ ......||.. | +...|.+|++..
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 5677886544 799999999999999998433322 22222221 1233566631 2 124688999998
Q ss_pred EEEEeCCceeeeEEecChhhhhhcCceeeEEEecCCCCCCCC
Q 007735 113 YQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPF 154 (591)
Q Consensus 113 Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~ 154 (591)
-.|... ++|.|||-|-.-.|+.+||++-|+|.+.- ..||
T Consensus 155 ~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~v--t~Py 193 (196)
T PF06525_consen 155 GVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNV--TVPY 193 (196)
T ss_pred EEEccC-CCceEEEEccCCChhhcCCEEEEEEecCc--ccce
Confidence 777553 69999999999999999999999999743 3454
No 52
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.39 E-value=0.00079 Score=58.61 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=50.0
Q ss_pred CCcEEeeCCCEEEEEEEECCCCCceeee-cCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhh
Q 007735 57 GPTINVTTNNNVVVNVRNKLDESLLIHW-SGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRA 135 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~~siH~-HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 135 (591)
...|+|++||+|+....|. ++++.+ .+. ..||... ..-.+|+++++.| +++|+|=|+|- .+..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF---~~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTV---TEEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEe---CCCEEEEEEcC--CCcc
Confidence 4689999999988777765 444443 221 1122211 1123566655555 36899999998 6778
Q ss_pred cCceeeEEEecC
Q 007735 136 SGGFGGFIINNR 147 (591)
Q Consensus 136 ~Gl~G~liV~~~ 147 (591)
.||.|.|+|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 899999999985
No 53
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.25 E-value=0.0029 Score=58.11 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=69.2
Q ss_pred EEECCCCCC-CcEEeeCCCEEEEEEEECCCCCceeeecCccCCCC-------CCCCCCC----CCC------CccCCCCc
Q 007735 49 IAINGKFPG-PTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRS-------SWQDGLL----GTN------CPIPPKWN 110 (591)
Q Consensus 49 ~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~-------~~~DGv~----~tq------~~I~PG~~ 110 (591)
+-|||+-.| |+|.+..|-+|.|+|+|.-..++++-. -+..+ ...||.. |.. ..|.+|++
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 567887665 799999999999999999554544332 12121 2357743 322 34667888
Q ss_pred EEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecCC
Q 007735 111 WTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRA 148 (591)
Q Consensus 111 ~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 148 (591)
..=.|+. -++|+|||-|-.-.+..+||+|-+||.+.-
T Consensus 152 ~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 152 RSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred eEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 5555554 589999999999999999999999999743
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.16 E-value=0.0014 Score=58.12 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=49.8
Q ss_pred EEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccce
Q 007735 431 VINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIW 510 (591)
Q Consensus 431 v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W 510 (591)
.+.++.|+.|+|.+.|.++..|.|-++++.+ ...++||....++|.++-||.+
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 4678899999999999988888777665421 3467889999999999999999
Q ss_pred eeeccc
Q 007735 511 NLRTEN 516 (591)
Q Consensus 511 ~~HCHi 516 (591)
.|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999998
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=96.87 E-value=0.0051 Score=54.18 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=50.3
Q ss_pred CcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcC
Q 007735 58 PTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASG 137 (591)
Q Consensus 58 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 137 (591)
-.|+|++||+ |++.|.-...++++.-+.- .+ +|.- ...-.+|+++++.|+ ++|+|-|+|-. ++.+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 4799999999 5667775557666655432 11 2211 123344466666665 49999999975 57789
Q ss_pred ceeeEEEec
Q 007735 138 GFGGFIINN 146 (591)
Q Consensus 138 l~G~liV~~ 146 (591)
|.|.|+|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 56
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.86 E-value=0.0042 Score=53.17 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=45.5
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
..+.++.|+.+.+++.|.+...|-|.+.+.. .+ ..++||+...+.|.++.||.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~--------------------------~~-~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLG--------------------------IS-KVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGT--------------------------EE-EEE-TT-EEEEEEEE-S-EE
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCc--------------------------eE-EEECCCCEEEEEEcCCCCEE
Confidence 4567889999999999998888877776521 22 67889999999999999999
Q ss_pred eeeecccccchhccceEEEE
Q 007735 510 WNLRTENLDSWYLGQETYVR 529 (591)
Q Consensus 510 W~~HCHil~H~~~GM~~~~~ 529 (591)
+-|+|-+ |.+ |-..+.
T Consensus 88 y~~~C~~--~~~--m~G~li 103 (104)
T PF13473_consen 88 YEFYCTM--HPN--MKGTLI 103 (104)
T ss_dssp EEEB-SS--S-T--TB----
T ss_pred EEEEcCC--CCc--ceeccc
Confidence 9999998 665 544443
No 57
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.44 E-value=0.018 Score=50.10 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=50.3
Q ss_pred CCCCcEEeeCCCEEEEEEEECC-CCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhh
Q 007735 55 FPGPTINVTTNNNVVVNVRNKL-DESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQ 133 (591)
Q Consensus 55 ~pgP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q 133 (591)
|=.+.|+|++||+|+ ++|+. ..++++..-+ ... .|- ......||++|+|.|. ++|+|=|+|-. +
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~s---~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p--H 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LDE---SERVSEEGTTYEHTFE---EPGIYLYVCVP--H 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-ccc---cccccCCCCEEEEEec---CCcEEEEEccC--C
Confidence 445689999999976 56543 3455554311 001 110 1123578999999885 58999999984 4
Q ss_pred hhcCceeeEEEe
Q 007735 134 RASGGFGGFIIN 145 (591)
Q Consensus 134 ~~~Gl~G~liV~ 145 (591)
...||.|.|+|+
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 667999999984
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.15 E-value=0.021 Score=63.16 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=59.0
Q ss_pred eEEEeccCCcEEEEEEecCC---CcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeC
Q 007735 429 TSVINGTYRGFMEVILQNND---TKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLD 505 (591)
Q Consensus 429 ~~v~~~~~g~~ve~vl~N~~---~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~ad 505 (591)
...+.++.|+.|.+.+.|.+ +..|.|-+-++.. -+.+.||....+.|++|
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~ad 606 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTAD 606 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcC
Confidence 34467899999999999974 4577776644321 13567899999999999
Q ss_pred Cccceeeecccccch-hccceEEEEEec
Q 007735 506 NVGIWNLRTENLDSW-YLGQETYVRVVN 532 (591)
Q Consensus 506 NpG~W~~HCHil~H~-~~GM~~~~~V~~ 532 (591)
.||+|.+||...-|. |.+|...+.|.+
T Consensus 607 kPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 607 KPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCEEEEEECCcccccCcccceEEEEEEe
Confidence 999999999874443 678999888863
No 59
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.04 E-value=0.041 Score=46.54 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=55.1
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCC-CCCCCCCCCCCccceEEeCCCcEEEEEEEeCCcc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDN-SRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVG 508 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~-~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG 508 (591)
..+.++.|++|.|+.. +...|.+++=- +.+... +..... ..-.+..+.+|....+.|. .||
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~~----------~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFVA----------DGMPAGADSDYVP----PGDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEET----------TSSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEec----------ccccccccccccC----ccccceecCCCCEEEEEeC--CCe
Confidence 4577889999988765 55777766522 111000 000001 1115667888888777776 999
Q ss_pred ceeeecccccchhccceEEEEEe
Q 007735 509 IWNLRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 509 ~W~~HCHil~H~~~GM~~~~~V~ 531 (591)
.+.|+|-. |+.+||-..+.|.
T Consensus 79 ~y~y~C~P--H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCTP--HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEETT--TGGTTSEEEEEEE
T ss_pred EEEEEcCC--CcccCCEEEEEEC
Confidence 99999993 9999999999884
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.98 E-value=0.026 Score=49.53 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=50.1
Q ss_pred EEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccce
Q 007735 431 VINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIW 510 (591)
Q Consensus 431 v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W 510 (591)
.+.++.|++|+|+ |.+...|.+.+.+..+ + ..+| ..+.||....+.|. .||.+
T Consensus 48 ~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~~---------~-------------~~~~-~~~~pg~t~~~tF~--~~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKLAPHNAVFDGAKE---------L-------------SHKD-LAFAPGESWEETFS--EAGTY 100 (119)
T ss_pred EEEEcCCCEEEEE--ECCCCCceEEecCCcc---------c-------------cccc-cccCCCCEEEEEec--CCEEE
Confidence 3567789998875 6667788876543210 0 0112 34677877776665 49999
Q ss_pred eeecccccchhccceEEEEEe
Q 007735 511 NLRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 511 ~~HCHil~H~~~GM~~~~~V~ 531 (591)
.|+|=. |...||-..+.|.
T Consensus 101 ~y~C~~--H~~~gM~G~I~V~ 119 (119)
T PRK02710 101 TYYCEP--HRGAGMVGKITVE 119 (119)
T ss_pred EEEcCC--CccCCcEEEEEEC
Confidence 999985 8889999999873
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.01 E-value=0.18 Score=43.90 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=48.9
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
..+.++.|++|.|+..+. .|. |........ ... +.+.-.++.... +.++.||.
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hn---------v~~~~~~~p--~g~-----------~~~~s~~g~~~~--~tF~~~G~ 67 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHN---------VETIKGMIP--EGA-----------EAFKSKINEEYT--VTVTEEGV 67 (116)
T ss_pred CEEEECCCCEEEEEECCC---Cee---------EEEccCCCc--CCc-----------ccccCCCCCEEE--EEeCCCEE
Confidence 456788999999998864 242 222111000 000 001112455544 45578999
Q ss_pred eeeecccccchhccceEEEEEecCCC
Q 007735 510 WNLRTENLDSWYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~~~GM~~~~~V~~p~~ 535 (591)
+-|+|=. |..+||-..+.|.+|..
T Consensus 68 Y~Y~C~p--H~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 68 YGVKCTP--HYGMGMVALIQVGDPPA 91 (116)
T ss_pred EEEEcCC--CccCCCEEEEEECCCCc
Confidence 9999997 99999999999987643
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.90 E-value=0.5 Score=42.75 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCCCCcEEeeCCCEEEEEEEECCC--CCceee---------ecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCcee
Q 007735 54 KFPGPTINVTTNNNVVVNVRNKLD--ESLLIH---------WSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVG 122 (591)
Q Consensus 54 ~~pgP~i~v~~Gd~v~v~v~N~l~--~~~siH---------~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~G 122 (591)
.|++-.++++.|++++..++|.-. ...++- -|... ...+++-.+....+.||++-+..|.. .++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~---~~Dme~d~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMIL---ADDMEHDDPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhh---CCccccCCcceeEeCCCCcEEEEEEe-cCCc
Confidence 467788999999999999999843 111211 12221 12344422233569999999999999 4799
Q ss_pred eeEEecChhhhhhcCceeeEEEec
Q 007735 123 SFFYFPSLHFQRASGGFGGFIINN 146 (591)
Q Consensus 123 t~wYH~H~~~q~~~Gl~G~liV~~ 146 (591)
.|=+-|-.-.++..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.70 E-value=0.24 Score=40.35 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=45.8
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
..+.+..|++|.| .|.+...|..+++.-.+ +.. .++. ..+.+|.... +.++.||.
T Consensus 11 ~~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~-------------~~~~-~~~~~g~~~~--~tf~~~G~ 65 (83)
T TIGR02657 11 PELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEA-------------ALKG-PMMKKEQAYS--LTFTEAGT 65 (83)
T ss_pred CEEEECCCCEEEE--EECCCCCccEEecCCCC-------ccc-------------cccc-cccCCCCEEE--EECCCCEE
Confidence 3467788999887 47777788887653221 000 0111 1234555544 55688999
Q ss_pred eeeecccccchhccceEEEEE
Q 007735 510 WNLRTENLDSWYLGQETYVRV 530 (591)
Q Consensus 510 W~~HCHil~H~~~GM~~~~~V 530 (591)
|.|||=+ |- .|...+.|
T Consensus 66 y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 66 YDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEEcCC--CC--CCeEEEEE
Confidence 9999998 54 48777776
No 64
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=93.02 E-value=0.64 Score=48.85 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=54.0
Q ss_pred CCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCC--CCCCccCCCCcEEEEEEeCCceeeeEEecChh
Q 007735 54 KFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLL--GTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH 131 (591)
Q Consensus 54 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~--~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 131 (591)
++--..+.+..|+ +.+.|+|....++.+-. .+|+. +..-.|.||.+.++.+++ .+|+|=|+|-
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~-- 104 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCG-- 104 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeecC--
Confidence 4545689999996 89999999655533210 02221 122469999999988877 5999999993
Q ss_pred hhhhcCceeeEEEecCC
Q 007735 132 FQRASGGFGGFIINNRA 148 (591)
Q Consensus 132 ~q~~~Gl~G~liV~~~~ 148 (591)
.+ ..+.|.|+|.+..
T Consensus 105 ~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 105 LL--TNPKGKLIVKGEA 119 (375)
T ss_pred cC--CCCCceEEEeCCC
Confidence 32 3358999998753
No 65
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.68 E-value=0.69 Score=40.23 Aligned_cols=74 Identities=14% Similarity=-0.007 Sum_probs=48.1
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
..+.++.|++|.|+-++ +...|.... .+.+.|+. ......+|....+.| +.||.
T Consensus 42 ~~ltV~~GdTVtw~~~~-d~~~HnV~s---------~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~ 95 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTG-EGGGHNVVS---------DGDGDLDE--------------SERVSEEGTTYEHTF--EEPGI 95 (115)
T ss_pred CEEEECCCCEEEEEECC-CCCCEEEEE---------CCCCCccc--------------cccccCCCCEEEEEe--cCCcE
Confidence 34678889999987543 345665432 22222321 111234566655555 78999
Q ss_pred eeeecccccchhccceEEEEEe
Q 007735 510 WNLRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 510 W~~HCHil~H~~~GM~~~~~V~ 531 (591)
+-|+|=. |..+||-..+.|.
T Consensus 96 Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 96 YLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEEccC--CCCCCCEEEEEEC
Confidence 9999998 9999999999873
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.58 E-value=0.63 Score=40.88 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=49.2
Q ss_pred CCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChh-hhhh
Q 007735 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRA 135 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 135 (591)
.+.|.+..|+.|++++++. +.-+++...++. -+.-+-||+.-...|++ +++|+|++.|..= ...-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~------------~k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELG------------IKMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCT------------EEEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccC------------cccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 5789999999999999996 333333333321 12446899999999998 6899999999841 1112
Q ss_pred cCceeeEEE
Q 007735 136 SGGFGGFII 144 (591)
Q Consensus 136 ~Gl~G~liV 144 (591)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 236666654
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.46 E-value=1.2 Score=39.19 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=54.6
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|.+.+.+. +..|.|.+-+... -+.+.||....+.|.++.||.
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~---------------------------k~d~~PG~~~~~~~~~~~~G~ 97 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELGI---------------------------KMDAIPGRTNSVTFTPDKPGT 97 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCTE---------------------------EEEEBTTCEEEEEEEESSSEE
T ss_pred ceecccccceEeEEEEcC-CccccccccccCc---------------------------ccccccccceeeeeeeccCCc
Confidence 457788999999999986 5788877754332 134578889999999999999
Q ss_pred eeeecccccc-hhccceEEEEEe
Q 007735 510 WNLRTENLDS-WYLGQETYVRVV 531 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~ 531 (591)
+-..|..+=. -|..|...++|+
T Consensus 98 y~~~C~e~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 98 YYGQCAEYCGAGHSFMPGKVIVV 120 (120)
T ss_dssp EEEEE-SSSSTTGGG-EEEEEEE
T ss_pred EEEcCccccCcCcCCCeEEEEEC
Confidence 9999997544 467777777764
No 68
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.71 Score=41.77 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=65.7
Q ss_pred EeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCcccee
Q 007735 432 INGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWN 511 (591)
Q Consensus 432 ~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~ 511 (591)
+.++.|+++..++.|.....|=|=+- ++.... +.+.... ...-..---..++.|.||....+-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~--~~~~~~~--~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNL--EHVTHMI--LADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccc--hhHHHhh--hCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 34677999999999998888866554 211111 1111000 0000011235689999999999999999999999
Q ss_pred eecccccchhccceEEEEEe
Q 007735 512 LRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 512 ~HCHil~H~~~GM~~~~~V~ 531 (591)
|-|-|-.|-+.||-.-++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999998874
No 69
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.61 E-value=0.83 Score=44.02 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=57.2
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+.+.| -.|.| +|-+.+ ..+| +-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf-------~ip~~~-----------------~k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSF-------WVPELG-----------------GKID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhcc-------cccccC-----------------ceEE---ecCCcEEEEEEEeCCCEE
Confidence 4567889999999999864 44544 442221 1233 567888999999999999
Q ss_pred eeeecccccc-hhccceEEEEEecCCC
Q 007735 510 WNLRTENLDS-WYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~~p~~ 535 (591)
+...|-..-. .|..|...++|+.+++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 9999986443 4788888999887653
No 70
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=90.17 E-value=1.3 Score=38.76 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCcEEeeCC-CEEEEEEEECCCCCceeeec--------------------CccCCCCCCCC-CCCCCCCccCCCCcEEEE
Q 007735 57 GPTINVTTN-NNVVVNVRNKLDESLLIHWS--------------------GIQQRRSSWQD-GLLGTNCPIPPKWNWTYQ 114 (591)
Q Consensus 57 gP~i~v~~G-d~v~v~v~N~l~~~~siH~H--------------------G~~~~~~~~~D-Gv~~tq~~I~PG~~~~Y~ 114 (591)
-..|.|..+ ..|.|+|+|.-.-+...-=| |+...--+..| -|...-.-|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 457999984 78999999973322111112 11100001111 111112458999999999
Q ss_pred EEeCC-ceee-eEEecChhhhhhcCceeeEE
Q 007735 115 FQVKD-QVGS-FFYFPSLHFQRASGGFGGFI 143 (591)
Q Consensus 115 f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 143 (591)
|+++. ++|+ |-|.|..-.+.. .|.|.|.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99863 5776 999999877765 5888875
No 71
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=86.28 E-value=3.1 Score=36.81 Aligned_cols=73 Identities=12% Similarity=-0.011 Sum_probs=46.8
Q ss_pred EEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccce
Q 007735 431 VINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIW 510 (591)
Q Consensus 431 v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W 510 (591)
.++++.|++|+|+ |.+...|..+.=+-. +|..-+++..-.+.....-| +-||.+
T Consensus 55 ~v~v~pGDTVtw~--~~d~~~Hnv~~~~~~----------------------~~~g~~~~~~~~~~s~~~Tf--e~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTWV--NTDSVGHNVTAVGGM----------------------DPEGSGTLKAGINESFTHTF--ETPGEY 108 (128)
T ss_pred EEEECCCCEEEEE--ECCCCCceEEEeCCC----------------------CcccccccccCCCcceEEEe--cccceE
Confidence 4567889999987 455557765442221 11112233333344544444 459999
Q ss_pred eeecccccchhccceEEEEEe
Q 007735 511 NLRTENLDSWYLGQETYVRVV 531 (591)
Q Consensus 511 ~~HCHil~H~~~GM~~~~~V~ 531 (591)
.|.|-. |.-+||-..+.|.
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEEecc--CCCCCcEEEEEeC
Confidence 999999 9999999999885
No 72
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=85.20 E-value=3 Score=41.46 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=57.4
Q ss_pred eEEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCcc
Q 007735 429 TSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVG 508 (591)
Q Consensus 429 ~~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG 508 (591)
.+.+.++.|+.|++.+... +-.|.| +|-+- +--+.+-||-...+.+.++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF-------~IP~l--------------------~~k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSF-------WIPQL--------------------GGKIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeE-------EecCC--------------------CceeeecCCceEEEEEecCCCe
Confidence 3557788899999999876 456654 44332 2223446778888899999999
Q ss_pred ceeeecccccch-hccceEEEEEecCCC
Q 007735 509 IWNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 509 ~W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
.+..+|+.+--. |..|-..+.|+++++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 999999986655 666667788887765
No 73
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=84.96 E-value=6 Score=38.07 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=55.2
Q ss_pred CCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecCh-hhhhh
Q 007735 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSL-HFQRA 135 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 135 (591)
...|.+..|+.|++++++.- .+ ||...+. . | -+.-+-||..-+..|++ +++|+|...|.. -...-
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~---~-~---~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VI--HSFWVPE---L-G---GKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hh--hcccccc---c-C---ceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 45899999999999999861 22 5554321 1 1 13456789998889987 799999999984 12222
Q ss_pred cCceeeEEEecC
Q 007735 136 SGGFGGFIINNR 147 (591)
Q Consensus 136 ~Gl~G~liV~~~ 147 (591)
+.|.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 568899988874
No 74
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=82.05 E-value=38 Score=32.22 Aligned_cols=95 Identities=12% Similarity=-0.047 Sum_probs=57.1
Q ss_pred EeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCC----CCCCC--CCCCCCccceEEeCCCcEEEEEEEeC
Q 007735 432 INGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDN----SRGTY--NKWDGIARTTTQVYPGAWTAILVSLD 505 (591)
Q Consensus 432 ~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~----~~~~~--n~~~p~~rDTv~Vpp~g~~~irf~ad 505 (591)
+.++.|-.|++.+.|.+...| .|-|+..+....... +.+.. --..+.--..--+++|......+..-
T Consensus 88 i~VPAGw~V~i~f~N~~~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l 160 (196)
T PF06525_consen 88 IYVPAGWNVQITFTNQESLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL 160 (196)
T ss_pred EEEcCCCEEEEEEEcCCCCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC
Confidence 456789899999999987776 566664432211110 00000 00000000001223455555455555
Q ss_pred CccceeeecccccchhccceEEEEEecC
Q 007735 506 NVGIWNLRTENLDSWYLGQETYVRVVNP 533 (591)
Q Consensus 506 NpG~W~~HCHil~H~~~GM~~~~~V~~p 533 (591)
.||.+.+=|-+-.|...||-..+.|.+.
T Consensus 161 ~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 161 PAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred CCceEEEEccCCChhhcCCEEEEEEecC
Confidence 6999999999999999999999988754
No 75
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=80.83 E-value=5.4 Score=39.64 Aligned_cols=78 Identities=8% Similarity=-0.073 Sum_probs=57.8
Q ss_pred CCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecCh-hhhhh
Q 007735 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSL-HFQRA 135 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 135 (591)
...|.+..|.+|+++++-. +.-+++...++. -+.-.-||...++.+++ +++|+|.-+|+. .+..-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~------------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLG------------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCC------------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 3899999999999999877 333333322221 23456788888888987 799999999994 45555
Q ss_pred cCceeeEEEecCC
Q 007735 136 SGGFGGFIINNRA 148 (591)
Q Consensus 136 ~Gl~G~liV~~~~ 148 (591)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 6799999999864
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=80.71 E-value=12 Score=32.94 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=52.9
Q ss_pred ceeEEEec-CCEEEEEEeEeCCcc----eEEEEEe-CCeeEEEe-------ecCCceee----eeeeEEEEccccEEEEE
Q 007735 213 YETIEVHP-GKTYRIRVHNVGIST----SLNFRIQ-NHNLLLAE-------TEGSYTVQ----QNYTSLDIHVGQSYSFL 275 (591)
Q Consensus 213 ~~~~~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via-------~DG~~~~p----~~~d~v~i~pGqR~dvl 275 (591)
...|+|++ ++.+.+.|-|.|... .|++-|- .-+++-|+ .|-.|+++ +...+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 47899998 488999999998542 3554442 22333332 24456643 23456689999999999
Q ss_pred EEeCC-CCCcceEEEEee
Q 007735 276 VTMDQ-NASTDYYIVASA 292 (591)
Q Consensus 276 v~~~~-~~g~~y~i~~~~ 292 (591)
++++. .+|.+|...++-
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 99863 455479887754
No 77
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=79.26 E-value=18 Score=29.35 Aligned_cols=65 Identities=17% Similarity=0.332 Sum_probs=35.8
Q ss_pred EEEEEeEeCCcceEEEEEe-CC--eeEEEeecCCcee--------eeeeeEEEEccccEEEEEEEeCCC---CCcceEEE
Q 007735 224 YRIRVHNVGISTSLNFRIQ-NH--NLLLAETEGSYTV--------QQNYTSLDIHVGQSYSFLVTMDQN---ASTDYYIV 289 (591)
Q Consensus 224 ~rlRliN~~~~~~~~~~i~-gh--~~~via~DG~~~~--------p~~~d~v~i~pGqR~dvlv~~~~~---~g~~y~i~ 289 (591)
..|++.|.+.. .+.|.+. |+ +|.|...+|..+- -+......|.|||...+-.+.+.. +| .|.+.
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G-~Y~~~ 81 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPG-EYTLE 81 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SE-EEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCc-eEEEe
Confidence 46777787755 5556653 44 3444455665552 133468899999999999988865 45 88876
Q ss_pred E
Q 007735 290 A 290 (591)
Q Consensus 290 ~ 290 (591)
|
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=77.06 E-value=5.7 Score=32.25 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=29.5
Q ss_pred cEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCC----CccCCCCcEEEEEEeCCc---eeeeEE
Q 007735 59 TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTN----CPIPPKWNWTYQFQVKDQ---VGSFFY 126 (591)
Q Consensus 59 ~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq----~~I~PG~~~~Y~f~~~~~---~Gt~wY 126 (591)
+|+-..|++..+.|.|.- |-.+ =-|+||-..+| ..|.||++.+|+++.+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~---------g~~v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKE---------GKEV--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT-----------EE--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCC---------CCEE--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 455556666666666541 1111 13788876554 459999999999999733 688854
No 79
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=76.73 E-value=21 Score=37.10 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=38.2
Q ss_pred EEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCc--------eeeecC---ccCCCCCCCC-----CCCC-CCCccCCCC
Q 007735 47 QVIAINGKFPGPTINVTTNNNVVVNVRNKLDESL--------LIHWSG---IQQRRSSWQD-----GLLG-TNCPIPPKW 109 (591)
Q Consensus 47 ~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~--------siH~HG---~~~~~~~~~D-----Gv~~-tq~~I~PG~ 109 (591)
++..-|=..||-++++ .+.++|+.+++. +++|=. +..-.+.+-| |... .+.||.|||
T Consensus 271 kv~~a~Y~VPGR~l~~------~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGE 344 (399)
T TIGR03079 271 NVTKANYDVPGRALRV------TMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGE 344 (399)
T ss_pred EEeccEEecCCcEEEE------EEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCc
Confidence 3333344567766654 466777765443 233322 1111222233 6555 467999999
Q ss_pred cEEEEEEeCC
Q 007735 110 NWTYQFQVKD 119 (591)
Q Consensus 110 ~~~Y~f~~~~ 119 (591)
+.+.+.++.|
T Consensus 345 Tr~v~v~aqd 354 (399)
T TIGR03079 345 TVEVKMEAKD 354 (399)
T ss_pred ceEEEEEEeh
Confidence 9999999853
No 80
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=73.67 E-value=11 Score=37.04 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=56.7
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|.+.+.+.| -.|.| +|-+.+ .. ..+-||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~D-ViHsf-------~ip~~~-----------------~k---~d~~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD-VIHSW-------TVPSLG-----------------VK---VDAIPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc-cccce-------eccccC-----------------ce---eECCCCcceeEEEEeCCCEE
Confidence 5677889999999999864 45544 442221 11 23457888888899999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+...|.-+-.. |..|-..++|+++++
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~~~ 218 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPLED 218 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECHHH
Confidence 99999975544 777888888887653
No 81
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=72.59 E-value=55 Score=30.69 Aligned_cols=96 Identities=11% Similarity=-0.113 Sum_probs=56.0
Q ss_pred EEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCC-CC---CCCCCCCC--CCCccceEEeCCCcEEEEEEEe
Q 007735 431 VINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWT-DN---SRGTYNKW--DGIARTTTQVYPGAWTAILVSL 504 (591)
Q Consensus 431 v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~-~~---~~~~~n~~--~p~~rDTv~Vpp~g~~~irf~a 504 (591)
.+-++.|-.|.++|.|.+...|.+ -++..+....+ +. +.+..+.. .+.--..=-+.+|......+..
T Consensus 86 tIyiPaGw~V~V~f~N~e~~pHnl-------~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~ 158 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESLPHNL-------KLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND 158 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCCCccE-------EEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEecc
Confidence 345678999999999998777644 44443221100 00 00001000 0000000112234455566666
Q ss_pred CCccceeeecccccchhccceEEEEEecC
Q 007735 505 DNVGIWNLRTENLDSWYLGQETYVRVVNP 533 (591)
Q Consensus 505 dNpG~W~~HCHil~H~~~GM~~~~~V~~p 533 (591)
--||.+-+=|-+.-|...||-..+.|-+.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 68999999999999999999988877643
No 82
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=68.15 E-value=20 Score=33.04 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=52.4
Q ss_pred EEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccce
Q 007735 431 VINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIW 510 (591)
Q Consensus 431 v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W 510 (591)
.+.++.|..|.+.+...| -.|.|.+- +.+ +..|. -||-...+.+.++.||.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP-------~lg-----------------vK~Da---vPGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVP-------SLG-----------------IKADA---IPGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeecc-------ccC-----------------ceeec---cCCceEEEEEecCCCeEE
Confidence 355788999999888764 45665542 221 12343 467777888899999999
Q ss_pred eeecccccc-hhccceEEEEEecCCC
Q 007735 511 NLRTENLDS-WYLGQETYVRVVNPEA 535 (591)
Q Consensus 511 ~~HCHil~H-~~~GM~~~~~V~~p~~ 535 (591)
...|.-+=- -|..|-..++|+.+++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~~ 151 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPEA 151 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHHH
Confidence 999996443 3556777777776653
No 83
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=67.29 E-value=7.9 Score=41.12 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=47.0
Q ss_pred cEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChh-hhhhcC
Q 007735 59 TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRASG 137 (591)
Q Consensus 59 ~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~G 137 (591)
+..|++||.|.+.++|--.-+-.+ ||.-.. +-|+ ...+.|-++-.|.|.+ +.+|.+||.|.-. .-.-+-
T Consensus 559 ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v---~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~e 628 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGV---NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHME 628 (637)
T ss_pred EEEEecCcEEEEEecccceecccc--ceeeec----cCce---EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHHh
Confidence 567777777777777764333333 232111 1111 2447888889999998 6899999987632 223334
Q ss_pred ceeeEEEe
Q 007735 138 GFGGFIIN 145 (591)
Q Consensus 138 l~G~liV~ 145 (591)
|+|-++|+
T Consensus 629 m~~rmlve 636 (637)
T COG4263 629 MAGRMLVE 636 (637)
T ss_pred hccceeec
Confidence 66777775
No 84
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.90 E-value=38 Score=32.37 Aligned_cols=77 Identities=12% Similarity=0.190 Sum_probs=56.0
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+... +-.|.|.+-... ..+|. -||-...+.+.++.||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~-DViHsf~vp~l~------------------------~k~d~---~PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS-DVIHSFSVPDLN------------------------LKMDA---IPGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecC-ccccceeccccC------------------------ceeec---CCCceEEEEEEcCCCEE
Confidence 345678899999999866 356655543221 12343 47888899999999999
Q ss_pred eeeecccccch-hccceEEEEEecCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPE 534 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~ 534 (591)
+-..|.-+--. |..|-..++|++++
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999975544 77888888888775
No 85
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=64.59 E-value=7.5 Score=33.51 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=33.7
Q ss_pred EEEEECCCCC---ceeeecCccCCC---CCCCCCCCCCCCccCCCCcEEEEEEeC--Cceee
Q 007735 70 VNVRNKLDES---LLIHWSGIQQRR---SSWQDGLLGTNCPIPPKWNWTYQFQVK--DQVGS 123 (591)
Q Consensus 70 v~v~N~l~~~---~siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~Y~f~~~--~~~Gt 123 (591)
|++.|.-+.+ .+=|||=-+-.+ ...-+||.|-|.-|.||++|+|.=-.+ .+.|+
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 5666665544 345888321111 123567777889999999999984432 44565
No 86
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=61.94 E-value=20 Score=35.15 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=56.6
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+...| -.| +|+|-+.+ ..+|.+ ||-...+.|.+|.||.
T Consensus 139 nel~lP~g~pV~~~ltS~D-ViH-------SF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~ 190 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS-VMN-------SFFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGV 190 (226)
T ss_pred ceEEEECCCEEEEEEEECc-hhh-------hhhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEE
Confidence 3456788999999998774 445 45554332 235543 6788889999999999
Q ss_pred eeeecccccc-hhccceEEEEEecCCC
Q 007735 510 WNLRTENLDS-WYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~~p~~ 535 (591)
+...|--+-- .|..|...++|.++++
T Consensus 191 y~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 191 YDGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHHH
Confidence 9999985443 3778888888887653
No 87
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.99 E-value=24 Score=34.69 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=56.9
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+...| -. |+|+|-+.+ ...|. -||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-Vi-------Hsf~ip~~~-----------------~k~da---~PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED-VL-------HSWAVPALG-----------------VKMDA---VPGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCc-cc-------cceeccccC-----------------Ccccc---CCCceEEEEEEeCCceE
Confidence 4567889999999998775 33 466665443 12443 47888888899999999
Q ss_pred eeeecccccc-hhccceEEEEEecCCC
Q 007735 510 WNLRTENLDS-WYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~~p~~ 535 (591)
+...|.-+=. .|..|-..++|+++++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~~ 218 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHHH
Confidence 9999986443 4788888888876653
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=57.15 E-value=1e+02 Score=24.97 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=41.4
Q ss_pred EEEecCCEE--EEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEE-EEccccEEEEEEEeCC-CCCcceEEEEe
Q 007735 216 IEVHPGKTY--RIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSL-DIHVGQSYSFLVTMDQ-NASTDYYIVAS 291 (591)
Q Consensus 216 ~~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v-~i~pGqR~dvlv~~~~-~~g~~y~i~~~ 291 (591)
-.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+...- .+| .|.+++.
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G-~~~i~~~ 82 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPG-SYTIRVV 82 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-C-EEEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCC-eEEEEEE
Confidence 345677765 688999988754444444 23455544 33445 7899999888887654 456 8888776
Q ss_pred ec
Q 007735 292 AR 293 (591)
Q Consensus 292 ~~ 293 (591)
..
T Consensus 83 iD 84 (101)
T PF07705_consen 83 ID 84 (101)
T ss_dssp ES
T ss_pred Ee
Confidence 64
No 89
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=56.54 E-value=37 Score=33.34 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=55.5
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+.+.| -.|. |+|-+.+ ...| .-||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHs-------f~vP~~~-----------------~k~d---aiPG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHS-------WTVPSLG-----------------VKVD---AVPGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-cccc-------ccccccC-----------------ccee---cCCCceEEEEEEeCCCEE
Confidence 4567789999999999864 4554 4443322 1233 347888888899999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+..-|.-+-.. |.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTKS 218 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHHH
Confidence 99999865444 777888888877653
No 90
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.41 E-value=40 Score=33.17 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=54.8
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+...| -.| +|+|-+.| ...|. -||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~iP~lg-----------------~k~da---iPG~~~~~~~~~~~~G~ 191 (230)
T MTH00185 140 HRMVVPMESPIRVLITAED-VLH-------SWTVPALG-----------------VKMDA---VPGRLNQATFIISRPGL 191 (230)
T ss_pred CeEEEecCCEEEEEEEcCc-ccc-------cccccccC-----------------ceeEe---cCCceEEEEEEeCCcEE
Confidence 4567889999999998775 344 55554332 12343 47778888889999999
Q ss_pred eeeecccccch-hccceEEEEEecCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPE 534 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~ 534 (591)
+.--|.-+=.. |.-|-..++|+.++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 192 YYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEchhhcCcCcCCCeEEEEEECHH
Confidence 99999865544 67777778777654
No 91
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=55.73 E-value=40 Score=33.09 Aligned_cols=78 Identities=9% Similarity=0.117 Sum_probs=55.6
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+...| -.| +|+|-+.+ +..|. -||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~ip~lg-----------------~k~da---iPG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED-VLH-------SWAVPSLG-----------------LKTDA---IPGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECc-ccc-------cccccccc-----------------cceec---CCCceEEEEEecCCcEE
Confidence 5667889999999998765 344 55553332 22443 47788888899999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+..-|.-+-.. |.-|-..++|.++++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~~ 218 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLKY 218 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHHH
Confidence 99999865444 677777788876653
No 92
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=53.31 E-value=32 Score=33.53 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=56.7
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+...| -.| +|+|-+.+ ..+|.+ ||-...+.|.++.||.
T Consensus 130 n~l~iP~g~~v~~~ltS~D-ViH-------sf~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~ 181 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD-TMT-------SFWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGT 181 (217)
T ss_pred CcEEEECCCEEEEEEECCc-hhh-------hhhchhhC-----------------ceeecC---CCceEEEEEEeCCCEE
Confidence 3456788999999998774 355 55553332 235543 7888899999999999
Q ss_pred eeeeccccc-chhccceEEEEEecCCC
Q 007735 510 WNLRTENLD-SWYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~-H~~~GM~~~~~V~~p~~ 535 (591)
+--.|=-+- --|..|...++|.++++
T Consensus 182 y~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 182 YRGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEEehhhcCccccCCeEEEEEeCHHH
Confidence 999997543 34778888888887764
No 93
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=51.64 E-value=19 Score=31.89 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=16.3
Q ss_pred CCCCCCCCCccCCCCcEEEE
Q 007735 95 QDGLLGTNCPIPPKWNWTYQ 114 (591)
Q Consensus 95 ~DGv~~tq~~I~PG~~~~Y~ 114 (591)
-+||-|.|.-|.||++|.|.
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred CCceecCCceECCCCCeEEe
Confidence 56777777779999998887
No 94
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=51.09 E-value=81 Score=24.90 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=30.5
Q ss_pred EecCCE--EEEEEeEeCCcc--eEEEEEeCCeeEEEeecCCc--eeeeeeeEEEEccccEEEEEEEeC--C--CCCcceE
Q 007735 218 VHPGKT--YRIRVHNVGIST--SLNFRIQNHNLLLAETEGSY--TVQQNYTSLDIHVGQSYSFLVTMD--Q--NASTDYY 287 (591)
Q Consensus 218 v~~G~~--~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~--~~p~~~d~v~i~pGqR~dvlv~~~--~--~~g~~y~ 287 (591)
|++|+. +++.+-|.|... ...++++. -+|=. ..+.... .|.||+...+-++.. . .+| +|.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G-~y~ 70 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPG-TYT 70 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SE-EEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCc-eEE
Confidence 356765 478888988653 34444432 22221 1222233 789997776666543 2 346 898
Q ss_pred EEEee
Q 007735 288 IVASA 292 (591)
Q Consensus 288 i~~~~ 292 (591)
|.+..
T Consensus 71 v~~~a 75 (78)
T PF10633_consen 71 VTVTA 75 (78)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87754
No 95
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.03 E-value=53 Score=32.25 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=55.7
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+...| -.| +|+|-+.+ ..+|. -||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~lg-----------------~K~Da---vPG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAED-VLH-------SWAVPSLG-----------------VKTDA---VPGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecc-hhh-------cccccccC-----------------ceeEe---cCCceEEEEEEEcccce
Confidence 5677889999999998775 344 55554332 22443 47888888999999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+.--|--+-.. |.-|-..++|+++++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLKH 218 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHHH
Confidence 99999865544 667777777776653
No 96
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=47.31 E-value=87 Score=24.07 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.5
Q ss_pred eeEEEecCCEEEEEEeEeCC
Q 007735 214 ETIEVHPGKTYRIRVHNVGI 233 (591)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~ 233 (591)
-.++++.|+++++.+-+.+.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~ 24 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG 24 (70)
T ss_dssp EEEEESTTEEEEEEECETTS
T ss_pred EEEEEcCCCEEEEEEcCCCC
Confidence 57899999999999877664
No 97
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=46.28 E-value=72 Score=31.60 Aligned_cols=78 Identities=6% Similarity=0.122 Sum_probs=55.9
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+... +-.|.|.+ -+.+ +.+|. -||-...+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~-DViHsf~i-------P~lg-----------------vK~Da---iPG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA-DVLHSFAV-------PSLG-----------------LKIDA---VPGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcC-Ccccceee-------cccC-----------------ceeec---CCCcceeEEEEcCCCEE
Confidence 457788999999999876 45665544 2221 23454 36777788899999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+.-.|.-+-.. |.-|-..++|+++++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHHH
Confidence 99999865544 677777788887653
No 98
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=45.50 E-value=84 Score=26.71 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=45.7
Q ss_pred EEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChhhhhhcCceeeEEEecC
Q 007735 69 VVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNR 147 (591)
Q Consensus 69 ~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 147 (591)
.|+++|.|.....|..|=-. ..-| .| ...+.||+++...|.. +-.|+--|.|+... ....-..-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S----~d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS----KDDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC----CCcc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 48999999766666666431 1122 22 1358999999999986 45677778899876 21113666766653
No 99
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.69 E-value=71 Score=31.37 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=55.3
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+...| -.| +|+|-+.+ ...|. -||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViH-------sf~vP~lg-----------------~k~da---~PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED-VLH-------SWAVPSLG-----------------IKTDA---IPGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecc-ccc-------cccccccC-----------------ceEEc---cCCcceeEEEEeCCcEE
Confidence 5677889999999998764 444 45553332 12343 46777788899999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+..-|.-+-.. |..|-..++|+++++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLNN 218 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHHH
Confidence 99999865444 777877888876653
No 100
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=41.60 E-value=2.4e+02 Score=25.74 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=16.1
Q ss_pred CCCccCCCCcEEEEEEeC
Q 007735 101 TNCPIPPKWNWTYQFQVK 118 (591)
Q Consensus 101 tq~~I~PG~~~~Y~f~~~ 118 (591)
-.||+.+||+++|.+..|
T Consensus 106 v~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 106 VYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ccCcccCCCceEEEEEee
Confidence 359999999999999986
No 101
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=41.29 E-value=65 Score=26.60 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=38.2
Q ss_pred EecCCEEEEEEe--EeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEEEeCCCC--CcceEEEEeec
Q 007735 218 VHPGKTYRIRVH--NVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNA--STDYYIVASAR 293 (591)
Q Consensus 218 v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~--g~~y~i~~~~~ 293 (591)
-+|||++.+|++ +... ......-....++|..-+|..+..... ......-.++.-+..+..+ | .|.|++...
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G-~y~i~~~~~ 86 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLG-TYTIRVKTD 86 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---E-EEEEEEEET
T ss_pred cCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCE-eEEEEEEEc
Confidence 469999999999 6652 100000011235566666655432211 1234566777777776543 6 898888764
No 102
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=40.98 E-value=1e+02 Score=25.17 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=40.1
Q ss_pred CCcEEee---CCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEe
Q 007735 57 GPTINVT---TNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYF 127 (591)
Q Consensus 57 gP~i~v~---~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH 127 (591)
.|.+.++ ....|.|++.|.-.....+....... ..+.+ .+..|.||++.+..|... ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 4555554 23589999999977777776655211 11111 346799999999999873 3334553
No 103
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=40.61 E-value=1.5e+02 Score=26.01 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=43.4
Q ss_pred eEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCce-------eeeeeeEEEEccccEEEEEEEeCCCCC
Q 007735 215 TIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYT-------VQQNYTSLDIHVGQSYSFLVTMDQNAS 283 (591)
Q Consensus 215 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~v~i~pGqR~dvlv~~~~~~g 283 (591)
.|.+.....|+|++-.-+ ...+.|+|..+ |+.++..- .+....++.+..|++|.|.|...+..+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 466766678999998433 56788988754 56665432 345567889999999999998765444
No 104
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=39.77 E-value=41 Score=35.11 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEEEEEECCCCCce---eeecCccCCCCC-------------CCCCCCC-CCCccCCCCcEEEEEEeCC----------
Q 007735 67 NVVVNVRNKLDESLL---IHWSGIQQRRSS-------------WQDGLLG-TNCPIPPKWNWTYQFQVKD---------- 119 (591)
Q Consensus 67 ~v~v~v~N~l~~~~s---iH~HG~~~~~~~-------------~~DGv~~-tq~~I~PG~~~~Y~f~~~~---------- 119 (591)
++.++|+|+-+++.. +..-|+++.... ..+|.-. .+.||+|||+.+...++.|
T Consensus 266 ~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~dA~WeveRL~~ 345 (381)
T PF04744_consen 266 TMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQDAAWEVERLSD 345 (381)
T ss_dssp EEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE-HHHHHTTGGG
T ss_pred EEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEeehhHHHHhhhhh
Q ss_pred --------ceeeeEEecChhhhhhcCceeeEE
Q 007735 120 --------QVGSFFYFPSLHFQRASGGFGGFI 143 (591)
Q Consensus 120 --------~~Gt~wYH~H~~~q~~~Gl~G~li 143 (591)
-.|.+++.+-.+..+..-..|++|
T Consensus 346 l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 346 LIYDPDSRFGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp GGGSSS-EEEEEEEEEETTS-EEEEEEEEE-E
T ss_pred hhcCcccceeEEEEEEcCCCCEEEEeccCccc
No 105
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=39.57 E-value=2.4e+02 Score=24.11 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=13.9
Q ss_pred EEEEeEeCCc-ceEEEEEeCCe
Q 007735 225 RIRVHNVGIS-TSLNFRIQNHN 245 (591)
Q Consensus 225 rlRliN~~~~-~~~~~~i~gh~ 245 (591)
++|++|++.. ..+.+.++|-.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6788887765 55666665544
No 106
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.43 E-value=98 Score=30.41 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=54.8
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+...| -.|.|.+ -+.| ...|. -||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~i-------P~lg-----------------~k~da---iPG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSWAV-------PSLG-----------------VKMDA---VPGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-ccccccc-------cccC-----------------ceeec---CCCceEEEEEEcCCCEE
Confidence 5567889999999998763 5665444 2221 23454 46778888899999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+...|--+-.. |.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFNT 218 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHHH
Confidence 99999865444 666666777776653
No 107
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.81 E-value=1e+02 Score=30.44 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=54.8
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+.+.| -.|. |+|-+.| +..| .-||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~D-ViHs-------f~vp~lg-----------------~k~d---aiPG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VLHS-------FAVPSLS-----------------VKID---AVPGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hhcc-------ccccccC-----------------ceeE---ccCCceEeEEEEeCCCEE
Confidence 5677889999999999874 4554 4443322 1234 346777788899999999
Q ss_pred eeeecccccc-hhccceEEEEEecCCC
Q 007735 510 WNLRTENLDS-WYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~~p~~ 535 (591)
+-.-|.-+=. .|.-|-..++|+++++
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~~~ 222 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSLDK 222 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECHHH
Confidence 9999986443 3677777788877653
No 108
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=37.35 E-value=1.5e+02 Score=25.54 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=27.0
Q ss_pred EEEEEEeEeCCc-ceEEEEEeCC-eeEEEeecCCceeeeeeeEEEEccccEEEEEEEeC
Q 007735 223 TYRIRVHNVGIS-TSLNFRIQNH-NLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMD 279 (591)
Q Consensus 223 ~~rlRliN~~~~-~~~~~~i~gh-~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~ 279 (591)
.|+++|+|.+.. ..+.+.++|. .+++ . ...+.+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEEE
Confidence 589999999876 3456666663 2222 1 134678889998887666543
No 109
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=35.58 E-value=1e+02 Score=23.58 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=27.1
Q ss_pred EEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEE
Q 007735 216 IEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSY 272 (591)
Q Consensus 216 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~ 272 (591)
+++.+|+..+||.-.. ..+.+.+-.++|.. ||. .+-+.|.+||++
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l 46 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSL 46 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEE
Confidence 5677888888886542 33677777777643 442 223445555554
No 110
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=35.27 E-value=29 Score=29.23 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.5
Q ss_pred EEEECCCCCCCcEEeeCCCEEEEEEEECCC
Q 007735 48 VIAINGKFPGPTINVTTNNNVVVNVRNKLD 77 (591)
Q Consensus 48 ~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~ 77 (591)
-+.+||+.--|.=.|+.||.|+|++.|.+-
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 367999988899999999999999999854
No 111
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=34.76 E-value=2.5e+02 Score=24.49 Aligned_cols=64 Identities=11% Similarity=0.203 Sum_probs=38.8
Q ss_pred eEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCce-eeeeeeEEEEccccEEEEEEEeCCCCC
Q 007735 215 TIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYT-VQQNYTSLDIHVGQSYSFLVTMDQNAS 283 (591)
Q Consensus 215 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~i~pGqR~dvlv~~~~~~g 283 (591)
.|++.....|+|.+...+ ...+.|+|. .|++.++..- .+.....+.+..|++|.+.|...+..+
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 355554556999885433 457888886 3444443321 123345688888888888887764433
No 112
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=34.70 E-value=1e+02 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.8
Q ss_pred cceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccceeeeccc
Q 007735 450 KMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTEN 516 (591)
Q Consensus 450 ~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~W~~HCHi 516 (591)
..|.+=+|--.||.+|+++| || +.|++.+...=+++||+
T Consensus 74 ~LhSqPI~~IRvwGvGrdng-----------------rd-----------FA~vard~~T~~~~CHV 112 (138)
T cd01272 74 VLHSQPIHTIRVWGVGRDNG-----------------RD-----------FAYVIRDERTRGSNCHV 112 (138)
T ss_pred eEEeeeeeEEEEEEecCCCC-----------------cc-----------eEEEeecCCCceeEEEE
Confidence 47888899999999998765 44 55667777778999997
No 113
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=31.58 E-value=2.9e+02 Score=22.66 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=33.6
Q ss_pred EEecCCEE--EEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEEEeC
Q 007735 217 EVHPGKTY--RIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMD 279 (591)
Q Consensus 217 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~ 279 (591)
.+..|++| .+.|.|.|.. ..+|++...+ ....... .....-.|+||+..++.|++.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~-----~~~~~~~-v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSI-PARFRVRQPE-----SLSSFFS-VEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEccCCEEEEEEEEEECCCC-CEEEEEEeCC-----cCCCCEE-EECCCCEECCCCEEEEEEEEE
Confidence 35667777 6999999876 4555553211 0111111 111234699999999999887
No 114
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=31.06 E-value=1.3e+02 Score=24.81 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=25.8
Q ss_pred EEEEEEeEeCCcceEEEEEeCCeeEEEeecCCcee---e-eeeeEEEEccccEEEE
Q 007735 223 TYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTV---Q-QNYTSLDIHVGQSYSF 274 (591)
Q Consensus 223 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~---p-~~~d~v~i~pGqR~dv 274 (591)
.|++||-|.+.. .+.|-...+.|...||...+ + +.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 489999998876 45555556666666653321 1 1123346788886644
No 115
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=30.19 E-value=1.1e+02 Score=31.75 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+...| -.| +|+|-+.+ ...|. -||-...+.|.+|.||.
T Consensus 151 NeL~iP~g~pV~f~lTS~D-ViH-------SF~IP~Lg-----------------~K~da---mPG~~n~l~~~a~~~G~ 202 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNS-VMN-------SFFIPRLG-----------------SQIYA---MAGMQTRLHLIANEPGT 202 (315)
T ss_pred ccEEEecCCEEEEEEEEch-hhh-------hhhhhhhC-----------------Ceeec---CCCceeEEEEEcCCCEE
Confidence 4466788999999998775 344 55554332 12443 46778889999999999
Q ss_pred eeeecccccch-hccceEEEEEe-cCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVV-NPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~-~p~~ 535 (591)
+.-.|-..--. |..|...+.|. ++++
T Consensus 203 Y~G~CaEyCG~gHs~M~f~v~v~~~~~~ 230 (315)
T PRK10525 203 YDGISASYSGPGFSGMKFKAIATPDRAE 230 (315)
T ss_pred EEEEChhhcCccccCCeEEEEEECCHHH
Confidence 99999865544 67777777776 3443
No 116
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=30.13 E-value=3e+02 Score=24.88 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=38.6
Q ss_pred CEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeee-------eeEEEEccccEE-EEEEEeC
Q 007735 222 KTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN-------YTSLDIHVGQSY-SFLVTMD 279 (591)
Q Consensus 222 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~-------~d~v~i~pGqR~-dvlv~~~ 279 (591)
.+|-|.+-|.|.. .+.++.-.++|+ +||+++.|.. -+++.|.|||-- ++.+.-.
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~ 131 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA 131 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC
Confidence 5789999999966 456777777765 7898776532 257779999987 5554433
No 117
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=29.81 E-value=2.5e+02 Score=29.77 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=42.3
Q ss_pred CcceeEEEecCCEEEEEEeEeCCcceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEEEeCCCCCcceEEEE
Q 007735 211 IDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVA 290 (591)
Q Consensus 211 ~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv~~~~~~g~~y~i~~ 290 (591)
|....+++++|+ ++|.+.|.+... ..|. ++ +|..+. -..=.|.||.+..+.+++ .+| .|.+.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~-~Efe-------~~--~~~~vv---~e~EnIaPG~s~~l~~~L--~pG-tY~~~C 103 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKA-LEWE-------IL--KGVMVV---EERENIAPGFSQKMTANL--QPG-EYDMTC 103 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCc-ceEE-------ee--cccccc---ccccccCCCCceEEEEec--CCc-eEEeec
Confidence 346789999996 899999998663 3332 22 222110 011278999888877776 378 999887
Q ss_pred e
Q 007735 291 S 291 (591)
Q Consensus 291 ~ 291 (591)
.
T Consensus 104 ~ 104 (375)
T PRK10378 104 G 104 (375)
T ss_pred C
Confidence 3
No 118
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=28.44 E-value=1.2e+02 Score=21.77 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=30.7
Q ss_pred CCCCCccceEE-eCCCcEEEEEEEeCCccceeeecccccchh
Q 007735 481 KWDGIARTTTQ-VYPGAWTAILVSLDNVGIWNLRTENLDSWY 521 (591)
Q Consensus 481 ~~~p~~rDTv~-Vpp~g~~~irf~adNpG~W~~HCHil~H~~ 521 (591)
+..|..+-+.. .+.|....+++.-..-..+=+||..+.|..
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~ 44 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSD 44 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCH
Confidence 34455555433 455778888888899999999999999865
No 119
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=28.00 E-value=2.1e+02 Score=24.94 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=34.9
Q ss_pred CCcEEeeCCCEEEEEEEECCCCC---ceeeec----CccCC-CCCCCCCCCCCCCccCCCCcEEEEEEeC
Q 007735 57 GPTINVTTNNNVVVNVRNKLDES---LLIHWS----GIQQR-RSSWQDGLLGTNCPIPPKWNWTYQFQVK 118 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~---~siH~H----G~~~~-~~~~~DGv~~tq~~I~PG~~~~Y~f~~~ 118 (591)
+..=.+..|..+.+.+.=..++. .....| |+..+ ..+..||=-...|||..|+.++|.+..+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 34456677777776665332222 223333 43322 1123455212469999999999999874
No 120
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.95 E-value=1.7e+02 Score=28.58 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=54.9
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+...| -.|.| +|-+.+ +..|. -||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf-------~vP~lg-----------------~k~da---iPG~~n~~~~~~~~~G~ 191 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD-VLHSW-------TLPSLG-----------------LKMDA---VPGRLNQLAFLSSRPGS 191 (225)
T ss_pred ceEEEecCCEEEEEEEeCC-hhhcc-------cccccc-----------------ccccC---CCCeEEEEEEEcCCCEE
Confidence 5677889999999998764 45544 443222 23454 37777888899999999
Q ss_pred eeeecccccc-hhccceEEEEEecCC
Q 007735 510 WNLRTENLDS-WYLGQETYVRVVNPE 534 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~~p~ 534 (591)
+---|.-+-- .|.-|-..++|++++
T Consensus 192 ~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 192 FYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 9999996543 367777778887664
No 121
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.82 E-value=2.1e+02 Score=28.05 Aligned_cols=78 Identities=9% Similarity=0.144 Sum_probs=55.1
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+...| -.|. |+|-+.+ ..+|. -||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHs-------f~vp~l~-----------------~k~da---vPG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIHS-------WTVPSLG-----------------VKVDA---VPGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhhh-------eeccccC-----------------Ceeec---CCCceEEEEEEEcCceE
Confidence 4567889999999998764 4554 4443322 23454 46788888999999999
Q ss_pred eeeecccccc-hhccceEEEEEecCCC
Q 007735 510 WNLRTENLDS-WYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~~p~~ 535 (591)
+.--|--+=- -|.-|-..++|+++++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~~ 218 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVNN 218 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHHH
Confidence 9999986443 3667777788776653
No 122
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.00 E-value=1.9e+02 Score=29.08 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=55.5
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|..+++.+...| -.| +|+|-+.+ +.+|.+ ||-.-.+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViH-------Sf~vP~lg-----------------vK~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLH-------SWTVPSLA-----------------VKMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-ccc-------ceeccccc-----------------CcccCC---CCceeeEEEEcCCcEE
Confidence 5677889999999988764 455 45553332 235543 5667778889999999
Q ss_pred eeeecccccch-hccceEEEEEecCCC
Q 007735 510 WNLRTENLDSW-YLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H~-~~GM~~~~~V~~p~~ 535 (591)
+.-.|.-+--. |..|-..++|+++++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~~ 252 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLSK 252 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHHH
Confidence 99999965443 777888888877653
No 123
>COG1470 Predicted membrane protein [Function unknown]
Probab=24.91 E-value=3.3e+02 Score=29.66 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=49.0
Q ss_pred eeEEEecCC--EEEEEEeEeCCc--ceEEEEEeCCeeEEEeecCCceeeeeeeEEEEccccEEEEEE--EeCC--CCCcc
Q 007735 214 ETIEVHPGK--TYRIRVHNVGIS--TSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLV--TMDQ--NASTD 285 (591)
Q Consensus 214 ~~~~v~~G~--~~rlRliN~~~~--~~~~~~i~gh~~~via~DG~~~~p~~~d~v~i~pGqR~dvlv--~~~~--~~g~~ 285 (591)
..+++.+|+ ..+++|-|.|.. ..+.+.+++-.=|=+.+|+.-+. .|.||+|-.|-+ +++. .+| +
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~-------sL~pge~~tV~ltI~vP~~a~aG-d 460 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIP-------SLEPGESKTVSLTITVPEDAGAG-D 460 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccccc-------ccCCCCcceEEEEEEcCCCCCCC-c
Confidence 567888886 469999999976 45667777766677778876432 456776655444 4443 345 8
Q ss_pred eEEEEeecc
Q 007735 286 YYIVASARF 294 (591)
Q Consensus 286 y~i~~~~~~ 294 (591)
|.+......
T Consensus 461 Y~i~i~~ks 469 (513)
T COG1470 461 YRITITAKS 469 (513)
T ss_pred EEEEEEEee
Confidence 988776643
No 124
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.78 E-value=85 Score=28.41 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCccCCCCcEEEEEEe---CCceeeeEEecCh
Q 007735 102 NCPIPPKWNWTYQFQV---KDQVGSFFYFPSL 130 (591)
Q Consensus 102 q~~I~PG~~~~Y~f~~---~~~~Gt~wYH~H~ 130 (591)
+.||+||++++-.++. |...|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5799999999999843 4457999998763
No 125
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=24.71 E-value=1.8e+02 Score=25.69 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=29.1
Q ss_pred EEEEEEeEeCCcceEEEEEeCCeeEEEeecCCcee----eeeeeEEEEccccEEEE
Q 007735 223 TYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTV----QQNYTSLDIHVGQSYSF 274 (591)
Q Consensus 223 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~----p~~~d~v~i~pGqR~dv 274 (591)
.|++||.|.+.. .+.|-...+.+...||...+ .+.-..=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 479999997754 46666677777766665321 11122335667765543
No 126
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.45 E-value=2.2e+02 Score=27.90 Aligned_cols=78 Identities=12% Similarity=0.222 Sum_probs=55.9
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.|++.+...| -.|. |+|-+.+ +.+|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHs-------f~vP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~ 191 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD-VLHS-------WTVPSLG-----------------VKIDAV---PGRLNQVGFFINRPGV 191 (226)
T ss_pred ceEEEecCCEEEEEEecCc-cccc-------eeccccC-----------------ccccCC---CCcEEEEEEEcCCCEE
Confidence 5677889999999998764 5554 4443332 235654 6777888899999999
Q ss_pred eeeecccccc-hhccceEEEEEecCCC
Q 007735 510 WNLRTENLDS-WYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~H-~~~GM~~~~~V~~p~~ 535 (591)
+.--|--+=- -|.-|-..++|+++++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (226)
T MTH00139 192 FYGQCSEICGANHSFMPIVVEAISPKF 218 (226)
T ss_pred EEEEChhhcCcCcCCCeEEEEEeCHHH
Confidence 9999985443 3677777788876653
No 127
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=24.05 E-value=42 Score=28.37 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=9.6
Q ss_pred CCCcE-EeeCCCEEEEE
Q 007735 56 PGPTI-NVTTNNNVVVN 71 (591)
Q Consensus 56 pgP~i-~v~~Gd~v~v~ 71 (591)
-||.| .+++|..|-.-
T Consensus 63 ~~p~ifqvrpGsvVS~s 79 (118)
T PF14481_consen 63 GGPVIFQVRPGSVVSFS 79 (118)
T ss_dssp TEEGGGT--TT-EEEEE
T ss_pred CCceEEEEcCCcEEEEe
Confidence 37888 89999987653
No 128
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=23.77 E-value=2.7e+02 Score=24.24 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=32.8
Q ss_pred cEEeeCCCEEEEEEEECCCCC-----ceeeec--CccCCCC-CCCCCCC--CCCCccCCCCcEEEEEEeC
Q 007735 59 TINVTTNNNVVVNVRNKLDES-----LLIHWS--GIQQRRS-SWQDGLL--GTNCPIPPKWNWTYQFQVK 118 (591)
Q Consensus 59 ~i~v~~Gd~v~v~v~N~l~~~-----~siH~H--G~~~~~~-~~~DGv~--~tq~~I~PG~~~~Y~f~~~ 118 (591)
.=.+..|..+.+.+.=..++. +.+|+. |+..+-. ...|+=. +..|||.+|+.++|.+.++
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 345566776666655322221 123332 4432211 1244421 2679999999999999774
No 129
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=22.09 E-value=77 Score=25.64 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.9
Q ss_pred CCCe---eeEEEEECCCCCCCcEEeeCCCEEEEE
Q 007735 41 PLGV---PQQVIAINGKFPGPTINVTTNNNVVVN 71 (591)
Q Consensus 41 ~dG~---~~~~~~~Ng~~pgP~i~v~~Gd~v~v~ 71 (591)
..|. +...+.+||+.-++.=+++.||+|.|.
T Consensus 41 sLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 41 SLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HcCCChHHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 4564 457899999999999999999999874
No 130
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.72 E-value=2.7e+02 Score=27.38 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=55.4
Q ss_pred EEEeccCCcEEEEEEecCCCcceeeeecCceEEEEEEcCCCCCCCCCCCCCCCCCCccceEEeCCCcEEEEEEEeCCccc
Q 007735 430 SVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQVYPGAWTAILVSLDNVGI 509 (591)
Q Consensus 430 ~v~~~~~g~~ve~vl~N~~~~~HPfHlHG~~F~Vv~~g~g~~~~~~~~~~n~~~p~~rDTv~Vpp~g~~~irf~adNpG~ 509 (591)
+.+.++.|+.+++.+...| -.|.| +|-+.+ ...|.+ ||-...+.+.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~D-ViHSf-------~vP~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD-VIHSW-------ALPSLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCc-ccccc-------cccccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 4556888999999998764 45644 443322 235543 6777788899999999
Q ss_pred eeeeccccc-chhccceEEEEEecCCC
Q 007735 510 WNLRTENLD-SWYLGQETYVRVVNPEA 535 (591)
Q Consensus 510 W~~HCHil~-H~~~GM~~~~~V~~p~~ 535 (591)
+.-.|--+= -.|..|-..++|+++++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 221 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLDN 221 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHHH
Confidence 999998543 34778888888887653
No 131
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.62 E-value=5e+02 Score=24.77 Aligned_cols=76 Identities=13% Similarity=-0.050 Sum_probs=48.2
Q ss_pred cEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecCh-hhhhhcC
Q 007735 59 TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSL-HFQRASG 137 (591)
Q Consensus 59 ~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~G 137 (591)
.+.+..|..|+++++-. + .+ |+...+. . +-+.-.-||..-...|++ +++|+|.-.|.. -+..-+.
T Consensus 117 ~l~lp~g~~v~~~ltS~-D---Vi--Hsf~vp~---l----~~k~d~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-D---VI--HSFSVPD---L----NLKMDAIPGRINHLFFCP-DRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-c---cc--cceeccc---c----CceeecCCCceEEEEEEc-CCCEEEEEEeehhhCcCccc
Confidence 47888888888888765 2 22 3332211 0 112234578888888886 789999999984 2233345
Q ss_pred ceeeEEEecCC
Q 007735 138 GFGGFIINNRA 148 (591)
Q Consensus 138 l~G~liV~~~~ 148 (591)
|.+-+.|.+++
T Consensus 183 M~~~v~v~~~~ 193 (194)
T MTH00047 183 MPIVIEVVDVD 193 (194)
T ss_pred CcEEEEEEcCC
Confidence 77888777653
No 132
>PHA02844 putative transmembrane protein; Provisional
Probab=20.82 E-value=1.1e+02 Score=24.13 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=13.9
Q ss_pred cccchhHHHHHHHHHHHHHHHhhc
Q 007735 567 AITGDRLKMFFTLLMTMCAMLVLF 590 (591)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~ 590 (591)
+-+.+...++++++++++++++++
T Consensus 43 ~~~~~~~~~ii~i~~v~~~~~~~f 66 (75)
T PHA02844 43 VCSSSTKIWILTIIFVVFATFLTF 66 (75)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHH
Confidence 333444555566667777776654
No 133
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=20.35 E-value=4.3e+02 Score=22.86 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=39.3
Q ss_pred EEEEEEEEEecCCCee-eEEEEECCCCCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCC---C--CCCCC
Q 007735 30 FDFEVSYITASPLGVP-QQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDG---L--LGTNC 103 (591)
Q Consensus 30 ~~~~v~~~~~~~dG~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG---v--~~tq~ 103 (591)
+.+.++..+++|+... .+-++|+..+ -+.-.+..|-.+.|.++-. ...++.. ..|+ . .+.+|
T Consensus 10 ~~~~i~~V~isP~p~~~G~~~ti~~~~-~~~~~v~~g~~~~v~~~~~---~i~~~~~--------~~DlC~~~~~~g~~C 77 (122)
T cd00917 10 DIVKVTSVEISPNPPAAGQNLTIEASG-SVGKEIEDGAYVVVEVKYG---FIRLLSE--------TYDLCDETKNVDLSC 77 (122)
T ss_pred CeEEEEEEEEECCCcCCCCcEEEEEEE-EECcCcCCCCEEEEEEEEC---CEEeecc--------cCCcccccccCCCcC
Confidence 6678888888887522 2334443332 2334455555666555543 1112211 1222 1 12369
Q ss_pred ccCCCCcEEEEEEe
Q 007735 104 PIPPKWNWTYQFQV 117 (591)
Q Consensus 104 ~I~PG~~~~Y~f~~ 117 (591)
||.+|+.+ |..+.
T Consensus 78 Pi~~G~~~-~~~~~ 90 (122)
T cd00917 78 PIEPGDKF-LTKLV 90 (122)
T ss_pred CcCCCcEE-EEEEe
Confidence 99999977 55543
No 134
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.24 E-value=3.5e+02 Score=26.47 Aligned_cols=77 Identities=13% Similarity=-0.094 Sum_probs=50.2
Q ss_pred CCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeCCceeeeEEecChh-hhhh
Q 007735 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRA 135 (591)
Q Consensus 57 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 135 (591)
...|.+..|..|++.+++. -.+ |+...+. -| -+.-.-||..-...|++ +++|+|+-.|..- +..-
T Consensus 139 ~n~l~lP~~~~v~~~~ts~----DVi--Hsf~ip~----~~---~k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA----DVI--HSWTVPS----LG---VKVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC----ccc--cceeccc----cC---ceeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 4679999999999999996 123 4433321 11 12334678888888887 6899999988831 2222
Q ss_pred cCceeeEEEecC
Q 007735 136 SGGFGGFIINNR 147 (591)
Q Consensus 136 ~Gl~G~liV~~~ 147 (591)
+.|.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 346677776653
No 135
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=20.19 E-value=6e+02 Score=22.43 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=27.7
Q ss_pred CceEEEcCcCCCCCCCccCCCCCcceeEE---EecCC----EEEEEEeEeCCcceEEEEEe
Q 007735 189 PDGVLINGKGPYQYNTTLVPDGIDYETIE---VHPGK----TYRIRVHNVGISTSLNFRIQ 242 (591)
Q Consensus 189 ~~~~lING~~~~~~~~~~~~~~~~~~~~~---v~~G~----~~rlRliN~~~~~~~~~~i~ 242 (591)
++.+.++|..+ -.++ .+||+ .+|+++.|.-.-..+...+.
T Consensus 14 G~~i~~~g~p~--------------~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~ 60 (129)
T PRK03999 14 GSYVVIDGEPC--------------KIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQP 60 (129)
T ss_pred CCEEEECCEEE--------------EEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEec
Confidence 56788899865 3333 56887 78999999877655555543
No 136
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=20.16 E-value=1.9e+02 Score=31.22 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=52.1
Q ss_pred CCCeeeEEEEECCC--CCCCcEEeeCCCEEEEEEEECCCCCceeeecCccCCCCCCCCCCCCCCCccCCCCcEEEEEEeC
Q 007735 41 PLGVPQQVIAINGK--FPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVK 118 (591)
Q Consensus 41 ~dG~~~~~~~~Ng~--~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~ 118 (591)
.||-+.+++.=+|. +-=-+-.+.+++.+++.|+|. ...++-.||+.. -.|+.- --+.|.-....+|.+
T Consensus 529 ~Dlmk~n~vvr~g~kv~v~~~staps~~l~ef~Vkq~--DEVt~l~tnld~----Ved~th---gfv~p~~~v~~~v~p- 598 (637)
T COG4263 529 RDLMKVNVVVRSGNKVRVYMTSTAPSFGLTEFKVKQG--DEVTVLTTNLDE----VEDLTH---GFVIPNYGVNMEVKP- 598 (637)
T ss_pred hccccceeEEecCCceEEEEeeccCCCceEEEEEecC--cEEEEEecccce----eccccc---eeeeccCceEEEEcc-
Confidence 34444444444443 111245678999999999998 567777788853 245433 445666677777775
Q ss_pred CceeeeEEecC
Q 007735 119 DQVGSFFYFPS 129 (591)
Q Consensus 119 ~~~Gt~wYH~H 129 (591)
++.|++||.|-
T Consensus 599 q~tasvtf~a~ 609 (637)
T COG4263 599 QRTASVTFYAD 609 (637)
T ss_pred CCceEEEEEcc
Confidence 78999999876
No 137
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.11 E-value=69 Score=23.86 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=19.0
Q ss_pred EEEECCCCC-CCcEEeeCCCEEEE
Q 007735 48 VIAINGKFP-GPTINVTTNNNVVV 70 (591)
Q Consensus 48 ~~~~Ng~~p-gP~i~v~~Gd~v~v 70 (591)
-+.+||+.- -|.-++..||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 367799865 78899999999986
Done!