Query 007736
Match_columns 591
No_of_seqs 189 out of 2516
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 09:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 4.3E-31 1.5E-35 289.6 20.9 484 30-574 10-511 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 8.1E-31 2.8E-35 284.8 22.6 445 28-572 9-478 (491)
3 1pw4_A Glycerol-3-phosphate tr 100.0 3.4E-28 1.2E-32 260.5 21.6 401 30-568 26-436 (451)
4 4gc0_A D-xylose-proton symport 99.9 3.3E-27 1.1E-31 256.2 11.3 413 67-579 54-476 (491)
5 3o7q_A L-fucose-proton symport 99.9 3.2E-25 1.1E-29 236.6 25.7 359 29-528 23-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 9.1E-24 3.1E-28 221.0 11.8 166 35-232 3-168 (375)
7 2cfq_A Lactose permease; trans 99.9 3.7E-23 1.3E-27 220.4 7.4 392 32-570 7-404 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.4E-13 4.7E-18 146.7 14.3 178 31-237 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.9E-12 6.4E-17 137.4 16.1 168 31-232 257-426 (438)
10 2cfq_A Lactose permease; trans 99.3 2.6E-12 9E-17 136.3 10.8 178 32-240 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.2E-10 4E-15 125.7 10.2 186 33-241 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 5.4E-09 1.8E-13 112.5 18.0 186 33-244 277-468 (491)
13 2gfp_A EMRD, multidrug resista 98.9 2.3E-10 8E-15 118.8 3.2 164 32-225 199-363 (375)
14 2xut_A Proton/peptide symporte 98.1 4.5E-06 1.5E-10 90.4 9.0 135 382-562 57-195 (524)
15 3mkt_A Multi antimicrobial ext 20.9 6.2E+02 0.021 25.1 21.2 11 186-196 158-168 (460)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=4.3e-31 Score=289.58 Aligned_cols=484 Identities=23% Similarity=0.346 Sum_probs=288.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH
Q 007736 30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMH------LGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA 103 (591)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~ 103 (591)
+++.++.+.+..++.+.++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44567788899999999999999999999999999 999999999999999999999999999999449999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchh-HHHHHHHHHHHHHhccccccccccccccCCCCCCChhh
Q 007736 104 IFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGM-QLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE 182 (591)
Q Consensus 104 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 182 (591)
++.++.+++.++++++ . +.+.++++|++.|++.+...+...++++|++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHT------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred HHHHHHHHHHHHHHHh------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence 9999999999888876 4 67888999999999999999999999999999998
Q ss_pred hhccchh---hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHH
Q 007736 183 RNQMTNF---FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVF 259 (591)
Q Consensus 183 ~~~r~~~---~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (591)
|++. +++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++.+.+++++++.....+.+
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 7554 4558999999999999999999988999999998887766665555444333322222222111111111
Q ss_pred HHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccccccc-------ccCccch
Q 007736 260 VVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKW-------NLATLTD 332 (591)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 332 (591)
....++++.+.+ ......+... . ........+.+....+.......... . +...+.+| +.....+
T Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 291 (524)
T 2xut_A 220 RSALLTKVEGKG-NIGLVLALIG---G-VSAAYALVNIPTLGIVAGLCCAMVLV--M-GFVGAGASLQLERARKSHPDAA 291 (524)
T ss_dssp -------CTTHH-HHHHHHHHHH---H-HHHHHTGGGTTTTCSSHHHHHHHHHH--H-HHHHTGGGTHHHHSCCSCCSSS
T ss_pred HHHHhhhhcccC-ccchhhhhhh---h-hhhhhhhcccchhhhhhhhhhhhhhh--h-cccccchhhHHhhhhccccHhH
Confidence 111111100000 0000000000 0 00000000000000000000000000 0 00001112 0001111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcC
Q 007736 333 VEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFK 412 (591)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~ 412 (591)
.++.++.......+.....++..+.+..+.+..+....+... + .+.+.....+.+..++..++.+++..+..+|.++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 123344444444555555556666655554433322222210 0 2344555566667777778888775444344322
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecc
Q 007736 413 TPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLR 492 (591)
Q Consensus 413 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~ 492 (591)
+ ..+.+.+.+|.++.+++++++...... .+.+ ...+.+++++.+++.++++++..+..++++.+
T Consensus 369 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 432 (524)
T 2xut_A 369 K---LTALRKMGAGIAITGLSWIVVGTIQLM----------MDGG---SALSIFWQILPYALLTFGEVLVSATGLEFAYS 432 (524)
T ss_dssp -----CCHHHHHTHHHHHHHHHHTTTTTTTT----------TTTT---CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred C---CChHHHHHHHHHHHHHHHHHHHHHHHH----------hcCC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 445566778888888887776543100 0000 12456667778899999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccc-ccCCcchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007736 493 ECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLAD-NLNQGRLYDFYWLLAILSALNFVIYLAFARWYVY 571 (591)
Q Consensus 493 ~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 571 (591)
.+|++.||+++|++++...+|+.+++.+.+.+.+..+ .+|.++ +.+ .....|++.+++++++.++++++.+++++
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH--HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998875321 124321 111 11223777888888888777777776665
Q ss_pred ccc
Q 007736 572 KDK 574 (591)
Q Consensus 572 ~~~ 574 (591)
++.
T Consensus 509 ~~~ 511 (524)
T 2xut_A 509 QDH 511 (524)
T ss_dssp ---
T ss_pred chh
Confidence 543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=8.1e-31 Score=284.82 Aligned_cols=445 Identities=18% Similarity=0.255 Sum_probs=295.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCChHHHHHHHHHHHHHHHHHHhhhHHHhhh-hchhHHH
Q 007736 28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT-----MHLGNASAANTVTNFLGTSFMLCLLGGFIADT-FLGRYLT 101 (591)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Grk~~ 101 (591)
+++++.++.+.+..++.+.++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567889999999999999999999999999988 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChh
Q 007736 102 IAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ 181 (591)
Q Consensus 102 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 181 (591)
+.++.++.+++.++++++ .+.+.++++|+++|+|.+...+...++++|++|+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence 999999999999988875 46778899999999999999999999999999988733
Q ss_pred hhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeec---cCCC-ChhhHHHH
Q 007736 182 ERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFK---KLVG-SPLTQIAS 257 (591)
Q Consensus 182 ~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 257 (591)
|++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++...+ ++++ ...++..+
T Consensus 144 ----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 144 ----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred ----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 677888899999999999999999999999999999998776666655544332221111 1111 11111111
Q ss_pred HHHH--------------HHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccccc
Q 007736 258 VFVV--------------AWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVIN 323 (591)
Q Consensus 258 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (591)
.... ....... +..+................ ...
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~------~~~ 267 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWN--------------------------SLPAYINLLTIVAIAIPVFY------FAW 267 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSC--------------------------CTTHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc--------------------------ccccchhhhhHHHHHHHHHH------HHH
Confidence 0000 0000000 00000000000000000000 000
Q ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeee-ccccccccccccccccccccchhhhhhhhhhhhhh
Q 007736 324 KWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQA-TTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRI 402 (591)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (591)
.|+..... ..++++......++.....++..+.+..+.+.... ...+.+ ..+.+.......+..++..++.+++
T Consensus 268 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l 342 (491)
T 4aps_A 268 MISSVKVT-STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWL 342 (491)
T ss_dssp HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHH
T ss_pred Hhhccccc-HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHH
Confidence 01000000 01223333334445555555665555544322211 111111 1334556666777777888888888
Q ss_pred hhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 007736 403 IVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFT 482 (591)
Q Consensus 403 ~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~ 482 (591)
.+|+.||. ......+.+|.++.+++++++...... .+ ++ ...+.+++++.+++.+++.+..
T Consensus 343 ~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~--~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 343 WTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG----TS--GKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp HHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHH-------CC----CC--TTCCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC----CC--CCccHHHHHHHHHHHHHHHHHH
Confidence 87766552 344566778888888888877764310 00 00 2345667778889999999999
Q ss_pred hhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHH
Q 007736 483 YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIY 562 (591)
Q Consensus 483 ~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~ 562 (591)
.+..+.++.|.+|++.||+++|+.+....+|..+++.+.+++.+.. ....|++.+++++++.++.
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS---------------EVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS---------------TTHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988876421 2346777888888887777
Q ss_pred HHHhhhcccc
Q 007736 563 LAFARWYVYK 572 (591)
Q Consensus 563 ~~~~~~~~~~ 572 (591)
+++.++.+++
T Consensus 469 ~~~~~~~~~~ 478 (491)
T 4aps_A 469 VFLSKRIQGL 478 (491)
T ss_dssp HHC-------
T ss_pred HHHHHHHHHH
Confidence 7766655544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=3.4e-28 Score=260.45 Aligned_cols=401 Identities=9% Similarity=-0.022 Sum_probs=260.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736 30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ 109 (591)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~ 109 (591)
.++.++...+..++.....+.+.+.+|.+. +++ .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 345666666777777777777777777665 456 9999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHH----HhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736 110 AAGVTILTI----STIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ 185 (591)
Q Consensus 110 ~i~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 185 (591)
+++.+++++ + .+.+.++++|+++|++.+...+...++++|++|+++
T Consensus 103 ~~~~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------ 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 152 (451)
T ss_dssp HHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHHHHHhhhhcc------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence 999999988 5 467788999999999999999999999999999998
Q ss_pred cchhhhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHh
Q 007736 186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWR 264 (591)
Q Consensus 186 r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (591)
|++++++.+.+.++|..++|.+++++.+..| |++.|++.++..++..+..++..++.+.+....+.
T Consensus 153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 219 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI------------- 219 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------
Confidence 9999999999999999999999999888888 99999988876655554444444432211100000
Q ss_pred hcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHH-HH
Q 007736 265 KRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIR-ML 343 (591)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 343 (591)
.+. ... ...+ . +.+. .++..++..........+.+.. .+
T Consensus 220 ------~~~--------------~~~----~~~~------~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (451)
T 1pw4_A 220 ------EEY--------------KND----YPDD------Y-----NEKA-----EQELTAKQIFMQYVLPNKLLWYIAI 259 (451)
T ss_dssp ------TTT--------------CCC---------------------------------CCTHHHHHHTSSCHHHHHHHH
T ss_pred ------hhh--------------ccc----cccc------c-----hhhh-----hcccccccchHHHHHcCHHHHHHHH
Confidence 000 000 0000 0 0000 0000000000000000122222 22
Q ss_pred HHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhh--hhhhcCCCCCCCchh
Q 007736 344 PIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPI--ARKVFKTPQGLTPLQ 421 (591)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~r~~~~~~~~~~~~ 421 (591)
..+.....++....+.+.++.. ..+.+ ....+.......+..+++.++.+++.+|+ .+| +
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~ 321 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKE-VKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------G 321 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTT-BSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------h
Confidence 2222222222332222222211 11111 11123344444555566666666666544 222 3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhH
Q 007736 422 RIGVGLVLSI-FAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKT 500 (591)
Q Consensus 422 ~i~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg 500 (591)
.+.++..+.. ++++++... ...+.+.+++..++.|++.....+..+.++.+.+|++.||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 381 (451)
T 1pw4_A 322 ATGVFFMTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG 381 (451)
T ss_dssp HHHHHHHHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh
Confidence 3445554444 454444321 1124555566677788888888888888999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 007736 501 MSTGLFLSTLSL-GFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARW 568 (591)
Q Consensus 501 ~~~gl~~~~~~l-g~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 568 (591)
+++|+.+....+ |..+++.+.+++.+..+ +...|++.+++++++.++.++..++
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFG--------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 99999999999876432 3456777777777777666555443
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=3.3e-27 Score=256.24 Aligned_cols=413 Identities=11% Similarity=0.012 Sum_probs=232.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHH
Q 007736 67 NASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQL 146 (591)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (591)
..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++....... ............+.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~------~~~~~~~~~~a~~~ 126 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI------NPDNTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS------SSSSSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cchhHHHHHHhhhH
Confidence 45678889999999999999999999998 999999999999999999998642100000 00000001122688
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc--------cccc
Q 007736 147 VVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN--------LGRE 218 (591)
Q Consensus 147 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~--------~g~~ 218 (591)
..++++|+++|+|.|+..+..+.+++|..|++. |++..++.+.+..+|..+++.++..+... .+|+
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 999999999999999999999999999999999 99999999999999999988877655432 2466
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCc
Q 007736 219 WGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTK 298 (591)
Q Consensus 219 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (591)
..+.+..+..++..+ .....++.+.--..+...++..+.+.....+.. .
T Consensus 201 ~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~------------------------------~ 249 (491)
T 4gc0_A 201 YMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL------------------------------A 249 (491)
T ss_dssp HHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------H
T ss_pred HHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCch------------------------------h
Confidence 655555443333222 222223211100000001111111100000000 0
Q ss_pred chhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHH-HHHHHHHHHHHHHHhccccceeeeeecccccccccc
Q 007736 299 QFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIR-MLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSF 377 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (591)
.....+......+ .++... .......++... ....+............+.+.+.... ..+
T Consensus 250 ~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------ 310 (491)
T 4gc0_A 250 TQAVQEIKHSLDH--------GRKTGG----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL-GAS------ 310 (491)
T ss_dssp HHHHHHHHHHHHH--------HHHHTT----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-SCC------
T ss_pred HHHHHHHHHHHHh--------hhhhhh----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc-CCC------
Confidence 0000000000000 000000 000000111111 11111111110000011111111100 000
Q ss_pred ccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007736 378 EIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDP 457 (591)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 457 (591)
............+..++...+..++.+|.+|| +.+..+..+++++++.++....
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~--------------- 364 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFY--------------- 364 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHh---------------
Confidence 11111222233344455555666666666555 4567777777777776665421
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHH-hhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccc
Q 007736 458 TAEIPLSVFWLVPQFFLVGAGEAFT-YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLA 536 (591)
Q Consensus 458 ~~~~~~~~~~li~~~~l~g~g~~~~-~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~ 536 (591)
...+.+..++..++...+.... .|..+.+..|.+|.+.|++++|+.+..+.+++++++.+.+.+.+.. |..
T Consensus 365 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-----~~~ 436 (491)
T 4gc0_A 365 ---TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-----WLV 436 (491)
T ss_dssp ---TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-----HHH
T ss_pred ---cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 1112222233333333333332 3667789999999999999999999999999999999988775321 110
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 007736 537 DNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEE 579 (591)
Q Consensus 537 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 579 (591)
... .....|++++++++++.++.+++.||+|+|+.||+|+
T Consensus 437 ~~~---~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 437 AHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred hhh---hhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 000 1123578899999999999999999999999998775
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=3.2e-25 Score=236.61 Aligned_cols=359 Identities=11% Similarity=0.058 Sum_probs=236.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736 29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV 108 (591)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~ 108 (591)
+.++.+..+....++.........+.+|. +.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 44556666666677777776666665555 6778999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736 109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN 188 (591)
Q Consensus 109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 188 (591)
.+++.+++...... .+++.++++|++.|++.+...+...++++|++|+++ |++
T Consensus 101 ~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 101 YALGAALFWPAAEI---------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHHhcccc---------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 99999988332111 488899999999999999999999999999999999 999
Q ss_pred hhhhhHHHHhhchhhhhhhhhhhc-cccc-------------------------cchhHHHHHHHHHHHHHHHHhcC-Cc
Q 007736 189 FFNWFFFFISIGSLAAVTVLVYIQ-DNLG-------------------------REWGYGICACAIVFGLVVFLSGT-RR 241 (591)
Q Consensus 189 ~~~~~~~~~~ig~~~~p~i~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~ 241 (591)
++++.+.+.++|..++|.+++.+. +..+ |++.|++.++..++..+.++... ++
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999988 5554 89998776655444443333321 11
Q ss_pred eeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccc
Q 007736 242 YRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVV 321 (591)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (591)
.+.+++++++ +...
T Consensus 234 ~~~~~~~~~~-------------------------------------------~~~~----------------------- 247 (438)
T 3o7q_A 234 LQSDNHSDAK-------------------------------------------QGSF----------------------- 247 (438)
T ss_dssp CTTTCCCCSS-------------------------------------------TTSH-----------------------
T ss_pred cccccccccc-------------------------------------------ccch-----------------------
Confidence 1000000000 0000
Q ss_pred ccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhh
Q 007736 322 INKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDR 401 (591)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 401 (591)
+.+++... ++.+........++..........+.+.++.....+.+ ....+.......+..+++.++.++
T Consensus 248 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 248 SASLSRLA----RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp HHHHHHHT----TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHH----hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00011111122222222233333333333121111111 111233344444555566666666
Q ss_pred hhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 007736 402 IIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAF 481 (591)
Q Consensus 402 ~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~ 481 (591)
+.+|+.+| +.+.++.++.+++++++... + +. +.+..+++.+++.+.
T Consensus 318 l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~-~~-~~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 318 LISRFAPH-----------KVLAAYALIAMALCLISAFA---------------------G-GH-VGLIALTLCSAFMSI 363 (438)
T ss_dssp HHHHSCHH-----------HHHHHHHHHHHHHHHHHHHC---------------------C-HH-HHHHHHHHHHHHHTT
T ss_pred HHHHhcch-----------HHHHHHHHHHHHHHHHHHHc---------------------C-Cc-HHHHHHHHHHHHHHH
Confidence 66554443 45667777777766665542 1 12 223445777888888
Q ss_pred HhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007736 482 TYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVT 528 (591)
Q Consensus 482 ~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 528 (591)
..|..+++..+..|++ ++.+.++.. ...+++.+++.+.|++.+..
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8899999989999977 899988877 67799999999999988653
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=9.1e-24 Score=221.01 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q 007736 35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT 114 (591)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~ 114 (591)
+.+.+..++.........+.+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566677777777777777765 567999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736 115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF 194 (591)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 194 (591)
++.++ ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 81 ~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 130 (375)
T 2gfp_A 81 VAVTT------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN 130 (375)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred HHHHh------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence 98887 588899999999999999999999999999999998 999999999
Q ss_pred HHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHH
Q 007736 195 FFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGL 232 (591)
Q Consensus 195 ~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~ 232 (591)
...++|..++|.+++++.+..||++.|++.++..++..
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999987776544443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=3.7e-23 Score=220.39 Aligned_cols=392 Identities=10% Similarity=-0.022 Sum_probs=221.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736 32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA 111 (591)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i 111 (591)
|+++......++...++....+++|.|+++++|++..+.+++.+.+.+++.++++++|+++||+ ||||++.++..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4567677777777777777888999999999999999999999999999999999999999998 999999988877655
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHH-HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736 112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQL-VVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF 190 (591)
Q Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 190 (591)
+...+...... ... ..+..++++.+++.+...+...+...++.++.. +.++..+
T Consensus 86 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~ 140 (417)
T 2cfq_A 86 MFAPFFIFIFG---------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEF 140 (417)
T ss_dssp CHHHHHHHTHH---------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCH
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccch
Confidence 33222110000 011 012334455555544444333444444333221 1156677
Q ss_pred hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCC
Q 007736 191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL 270 (591)
Q Consensus 191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (591)
+..+...++|..++|.+++++.+ .+|++.|++.++..++..+. ....++ ++++..+ .
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~-~~~~~~---~~~~~~~------------------~ 197 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVL-LFFAKT---DAPSSAT------------------V 197 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHH-SCSSCC---CCSCSSC------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH-HHHcCc---ccccccc------------------c
Confidence 77777888999999999998876 58999988766543322222 221111 1110000 0
Q ss_pred CCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHH-HHHH
Q 007736 271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI-WATT 349 (591)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 349 (591)
.+ + . . .+ .+... . ..+. +..++ +.+...... +...
T Consensus 198 ~~---------~-----~-~-~~-~~~~~--~--------------------~~~~----~~~~~-~~~~~~~~~~~~~~ 233 (417)
T 2cfq_A 198 AN---------A-----V-G-AN-HSAFS--L--------------------KLAL----ELFRQ-PKLWFLSLYVIGVS 233 (417)
T ss_dssp SS---------S-----S-S-SC-CCCCC--H--------------------HHHH----HHTTC-HHHHHHHHHHHHHH
T ss_pred cc---------c-----c-c-cc-ccccc--H--------------------HHHH----HHhcC-CchhhHHHHHHHHH
Confidence 00 0 0 0 00 00000 0 0000 00001 112111111 1111
Q ss_pred HHHHHHhccccceeeeeecccccccccccccc---ccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHH
Q 007736 350 IIFWTVYAQMTTFSVSQATTMNRHIGSFEIPG---ASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVG 426 (591)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g 426 (591)
..++...++.+.++... .+.. +... +....++.+...++..+.+++.+|+.+| +.+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~ 295 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSF---FATG----EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLA 295 (417)
T ss_dssp HHHHHHHHHHHHHHHHT---SSSH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---Hhcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHH
Confidence 22222222222222110 1100 0011 1223333334445556666666555444 446667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH-
Q 007736 427 LVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL- 505 (591)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl- 505 (591)
..+.+++++.+... .+.+.+++..++.+++.....+..+.++.|..|++.||++.|+
T Consensus 296 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 296 GTIMSVRIIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHHHTTC----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 76666665544321 1333444455566666666667778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007736 506 FLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYV 570 (591)
Q Consensus 506 ~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 570 (591)
++....+|+.+++.+.|++.+..+ +...|.+.+++++++.++.++..++.+
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~g--------------~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESIG--------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHSH--------------HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhHHHHHhhhhHHHHHHhcC--------------cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 488889999999999998875321 334677777777777766555444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=1.4e-13 Score=146.70 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=149.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhc--hhHHHHHHHHHH
Q 007736 31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFL--GRYLTIAIFATV 108 (591)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~--Grk~~~~~~~~~ 108 (591)
.+.++...+..++....++++..++|.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3577888888899999999999999999998899999999999999999999999999999999 5 888888877666
Q ss_pred HH-HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736 109 QA-AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT 187 (591)
Q Consensus 109 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 187 (591)
.. ++.+++.+. + ..+...+.+..++.|++.+...+...+++.|.+|+++ |+
T Consensus 330 ~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 381 (451)
T 1pw4_A 330 LVTIATIVYWMN---P-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 381 (451)
T ss_dssp HHHHHHHHTTSC---C-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HH
T ss_pred HHHHHHHHHHHh---c-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hh
Confidence 55 444444332 1 0255666777788888888888888899999999998 99
Q ss_pred hhhhhhHHHHhh-chhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736 188 NFFNWFFFFISI-GSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS 237 (591)
Q Consensus 188 ~~~~~~~~~~~i-g~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 237 (591)
+++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+.
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999998887776666555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.41 E-value=1.9e-12 Score=137.43 Aligned_cols=168 Identities=16% Similarity=0.096 Sum_probs=137.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736 31 WTSAAMILGGEACERLTTLGIAVNLVTY-LTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ 109 (591)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~ 109 (591)
.+.++...+..++.....+.+..+++.| +++.+|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3567777788888888888999999999 8888899999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736 110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF 189 (591)
Q Consensus 110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 189 (591)
+++.+++.+. .+... .+..++.+++.+...+...++..|.+|++ ++.+
T Consensus 336 ~~~~~~~~~~------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 383 (438)
T 3o7q_A 336 MALCLISAFA------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYG 383 (438)
T ss_dssp HHHHHHHHHC------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHH
T ss_pred HHHHHHHHHc------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccch
Confidence 8887777664 23333 33447788888888899999989998844 4555
Q ss_pred hhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHH
Q 007736 190 FNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGL 232 (591)
Q Consensus 190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~ 232 (591)
.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 56655 566999999999999999998 9999987765544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.33 E-value=2.6e-12 Score=136.30 Aligned_cols=178 Identities=10% Similarity=0.016 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---ChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736 32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHL---GNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV 108 (591)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~ 108 (591)
+.++...+..++....++....++|.|+.+.++. +....+...+...++..++.++.|+++||+ |||+++.++..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 4455555555555556666667789898766653 234556777777788889999999999998 999999888877
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736 109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN 188 (591)
Q Consensus 109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 188 (591)
.+++.++.++. .+...+.+..++.+++.+...+....+++|.+|++. |++
T Consensus 299 ~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~ 348 (417)
T 2cfq_A 299 MSVRIIGSSFA------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT 348 (417)
T ss_dssp HHHHHHHHTTC------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred HHHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence 77765555432 244455555666666666555666789999999988 999
Q ss_pred hhhh-hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736 189 FFNW-FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR 240 (591)
Q Consensus 189 ~~~~-~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 240 (591)
+.++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.+..+...+
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9998 588888999999999999998888888888877766666655444443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.12 E-value=1.2e-10 Score=125.72 Aligned_cols=186 Identities=9% Similarity=-0.011 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH-----HHHH
Q 007736 33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA-----IFAT 107 (591)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~-----~~~~ 107 (591)
..+.+.+..++....+.....+++.|+.+.++.+..+.+.+.+...++..++.++.|+++||+ |||+... ++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555566666667777788899999988888877888888888999999999999999997 9876544 6666
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736 108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT 187 (591)
Q Consensus 108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 187 (591)
+.+++.+++........ .....+...+.+..++.+++.+...+...+++.|.+|++. |+
T Consensus 363 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g 421 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS 421 (491)
T ss_dssp HHHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred HHHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence 66666665555321000 0000245556677788899999988999999999999999 99
Q ss_pred hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736 188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR 241 (591)
Q Consensus 188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 241 (591)
++.++++...++|..++|.+.+++.+. ++...|.+.+...+++.+..+...++
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764 56667777766665655555554444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=5.4e-09 Score=112.52 Aligned_cols=186 Identities=11% Similarity=0.045 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736 33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG 112 (591)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~ 112 (591)
.........++.+...+....+..+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 344444444444444444444455556667788888877777778889999999999999998 9999999998888887
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736 113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW 192 (591)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 192 (591)
.+.++....... ......+.+..+..+++. +..+..+.+.+|.+|.+. |+++.++
T Consensus 356 ~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~ 410 (491)
T 4gc0_A 356 MFSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAI 410 (491)
T ss_dssp HHHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred HHHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence 776665432110 012222222222223332 334667789999999999 9999999
Q ss_pred hHHHHhhchhhhhhhhhhhcc------ccccchhHHHHHHHHHHHHHHHHhcCCceee
Q 007736 193 FFFFISIGSLAAVTVLVYIQD------NLGREWGYGICACAIVFGLVVFLSGTRRYRF 244 (591)
Q Consensus 193 ~~~~~~ig~~~~p~i~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 244 (591)
.+....+++.+++.+.+.+.+ ..++...|++.+++.+++.++.+++.||.+.
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 999999999999888776644 2356667777777666777666676776543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.94 E-value=2.3e-10 Score=118.83 Aligned_cols=164 Identities=11% Similarity=-0.012 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH-HH
Q 007736 32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV-QA 110 (591)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~-~~ 110 (591)
+.++...+..++.....+....++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5677777888888888899999999999988999999999999999999999999999999997 872 2233322 22
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736 111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF 190 (591)
Q Consensus 111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 190 (591)
.+..+...... ...+.+.+.+..++.+++.+...+...++..|.+| ++ |+++.
T Consensus 276 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~ 328 (375)
T 2gfp_A 276 AGLLMWIPDWF--------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG 328 (375)
T ss_dssp TSSSSSHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred HHHHHHHHhhh--------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence 23222111100 00255666677888899999999999999999988 66 99999
Q ss_pred hhhHHHHhhchhhhhhhhhhhccccccchhHHHHH
Q 007736 191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICA 225 (591)
Q Consensus 191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~ 225 (591)
++.+...++|..++|.+.+.+.+..+|...+++..
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999988777877766544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.12 E-value=4.5e-06 Score=90.44 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=96.7
Q ss_pred ccccccchhhhhhhhhhhhhhhhhh-hhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007736 382 ASLTFFFVGSILLTVPVYDRIIVPI-ARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAE 460 (591)
Q Consensus 382 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 460 (591)
+.+.+...++..++.++.+++.+|+ +|| +.+.++.++.+++.+++...
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 105 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF-------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3344455556666677777777655 444 55777888888877776652
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 007736 461 IPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL---FLSTLSLGFFVSSLLVSLVHKVTGDKKPWLAD 537 (591)
Q Consensus 461 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl---~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~ 537 (591)
+.+.+.+++..++.|++.+...|...+++.|.+|++.|++..+. ++....+|..+++.+.+++.+.. +|
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----g~--- 177 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----GA--- 177 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----CH---
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cH---
Confidence 22556667778899999999999999999999999999877666 88888999999999988876432 23
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHH
Q 007736 538 NLNQGRLYDFYWLLAILSALNFVIY 562 (591)
Q Consensus 538 ~~~~~~~~~~f~~~~~~~~v~~~~~ 562 (591)
...|++.++.+++..++.
T Consensus 178 -------~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 178 -------AVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 345666666655555443
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=20.87 E-value=6.2e+02 Score=25.07 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=4.7
Q ss_pred cchhhhhhHHH
Q 007736 186 MTNFFNWFFFF 196 (591)
Q Consensus 186 r~~~~~~~~~~ 196 (591)
+.+...+.+..
T Consensus 158 ~~~~~~~~~~~ 168 (460)
T 3mkt_A 158 LTKPAMVIGFI 168 (460)
T ss_dssp CCTTTHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 44444444333
Done!