Query 007737
Match_columns 591
No_of_seqs 244 out of 1721
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 14:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 3E-121 5E-126 1041.5 55.9 563 23-590 22-591 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 4E-103 8E-108 895.8 52.3 503 49-591 31-602 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 1.4E-65 3E-70 543.2 25.7 307 81-442 57-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 2.8E-62 6E-67 505.4 18.2 265 64-363 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 2.5E-50 5.4E-55 419.2 21.8 240 83-367 54-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 3.5E-30 7.5E-35 256.3 13.7 180 404-591 1-191 (227)
7 COG0486 ThdF Predicted GTPase 70.8 1.7E+02 0.0037 32.2 16.6 96 253-367 60-171 (454)
8 COG1160 Predicted GTPases [Gen 64.5 17 0.00038 39.4 6.8 46 479-537 75-120 (444)
9 cd06533 Glyco_transf_WecG_TagA 56.8 57 0.0012 30.8 8.2 86 422-544 47-137 (171)
10 COG0039 Mdh Malate/lactate deh 51.4 14 0.0003 38.6 3.2 58 483-545 65-124 (313)
11 TIGR01756 LDH_protist lactate 49.6 10 0.00022 39.7 2.0 56 483-545 56-116 (313)
12 TIGR00237 xseA exodeoxyribonuc 49.5 89 0.0019 34.2 9.4 59 476-546 173-234 (432)
13 PRK00286 xseA exodeoxyribonucl 49.5 82 0.0018 34.5 9.2 59 476-546 179-239 (438)
14 TIGR01759 MalateDH-SF1 malate 49.0 14 0.0003 38.8 2.9 60 482-545 74-135 (323)
15 PRK06559 nicotinate-nucleotide 48.6 1.1E+02 0.0024 31.5 9.3 29 183-220 118-146 (290)
16 PF10087 DUF2325: Uncharacteri 48.5 1.2E+02 0.0025 25.6 8.1 40 481-535 42-81 (97)
17 TIGR00696 wecB_tagA_cpsF bacte 48.0 85 0.0018 29.9 7.9 40 486-544 99-138 (177)
18 PF06858 NOG1: Nucleolar GTP-b 47.3 74 0.0016 24.5 5.8 23 515-537 32-55 (58)
19 PF08139 LPAM_1: Prokaryotic m 45.4 19 0.00041 22.8 1.9 17 3-20 7-23 (25)
20 PF03808 Glyco_tran_WecB: Glyc 44.1 79 0.0017 29.8 7.0 86 422-544 49-139 (172)
21 PRK05442 malate dehydrogenase; 43.2 21 0.00046 37.5 3.2 58 482-545 75-136 (326)
22 cd00938 HisRS_RNA HisRS_RNA bi 42.9 60 0.0013 23.6 4.4 30 339-368 13-42 (45)
23 PLN00135 malate dehydrogenase 42.0 19 0.00041 37.5 2.6 60 482-545 53-114 (309)
24 COG0157 NadC Nicotinate-nucleo 41.9 1.4E+02 0.003 30.6 8.5 110 183-344 109-227 (280)
25 PRK05848 nicotinate-nucleotide 41.8 1.5E+02 0.0033 30.3 9.0 50 279-343 170-220 (273)
26 cd00704 MDH Malate dehydrogena 41.7 22 0.00047 37.4 3.0 60 482-545 71-132 (323)
27 PRK14864 putative biofilm stre 41.4 34 0.00074 29.6 3.6 22 2-23 3-24 (104)
28 PF02601 Exonuc_VII_L: Exonucl 41.3 93 0.002 32.4 7.7 107 414-546 8-122 (319)
29 PRK05086 malate dehydrogenase; 41.1 25 0.00054 36.7 3.3 56 483-544 65-123 (312)
30 PLN00112 malate dehydrogenase 40.0 18 0.0004 39.6 2.2 56 483-545 172-232 (444)
31 PF00056 Ldh_1_N: lactate/mala 39.2 6.1 0.00013 36.1 -1.4 55 483-544 65-123 (141)
32 PRK13533 7-cyano-7-deazaguanin 39.2 31 0.00068 38.3 3.8 47 285-332 75-121 (487)
33 TIGR01772 MDH_euk_gproteo mala 39.2 32 0.00069 35.9 3.8 56 483-544 63-121 (312)
34 cd00300 LDH_like L-lactate deh 38.6 21 0.00046 37.0 2.3 58 483-545 62-121 (300)
35 PRK06543 nicotinate-nucleotide 38.5 1.5E+02 0.0032 30.5 8.3 29 183-220 110-138 (281)
36 cd01338 MDH_choloroplast_like 38.3 23 0.00049 37.2 2.5 57 482-545 73-134 (322)
37 PF05690 ThiG: Thiazole biosyn 37.6 56 0.0012 32.6 4.8 83 249-347 136-228 (247)
38 TIGR01757 Malate-DH_plant mala 37.5 24 0.00051 38.1 2.5 57 483-545 116-176 (387)
39 cd01337 MDH_glyoxysomal_mitoch 37.1 27 0.00058 36.5 2.8 56 482-544 63-122 (310)
40 cd01336 MDH_cytoplasmic_cytoso 36.6 29 0.00062 36.5 2.9 57 483-545 74-134 (325)
41 COG1182 AcpD Acyl carrier prot 36.5 1.1E+02 0.0023 29.9 6.5 54 478-542 78-146 (202)
42 PF00009 GTP_EFTU: Elongation 36.4 1.3E+02 0.0028 28.3 7.3 47 478-537 84-130 (188)
43 PRK13556 azoreductase; Provisi 35.3 1E+02 0.0022 29.9 6.4 54 478-542 80-148 (208)
44 PF07172 GRP: Glycine rich pro 34.8 40 0.00086 28.7 2.9 22 1-22 1-22 (95)
45 PF02421 FeoB_N: Ferrous iron 34.4 1E+02 0.0022 28.8 5.9 37 486-537 77-113 (156)
46 PRK11548 outer membrane biogen 34.4 1E+02 0.0022 26.9 5.7 26 48-74 35-60 (113)
47 PRK10781 rcsF outer membrane l 34.0 62 0.0013 29.3 4.2 14 9-22 5-18 (133)
48 PLN02602 lactate dehydrogenase 33.4 29 0.00063 36.9 2.4 56 483-545 101-160 (350)
49 TIGR01771 L-LDH-NAD L-lactate 33.3 27 0.00059 36.2 2.1 55 483-544 60-118 (299)
50 PRK13555 azoreductase; Provisi 32.7 1.1E+02 0.0023 30.0 6.1 54 478-542 80-148 (208)
51 cd05290 LDH_3 A subgroup of L- 32.1 42 0.0009 35.0 3.3 56 483-545 64-125 (307)
52 TIGR01758 MDH_euk_cyt malate d 32.0 36 0.00079 35.7 2.8 57 483-545 71-131 (324)
53 COG2022 ThiG Uncharacterized e 31.4 1.4E+02 0.0031 29.7 6.5 81 251-347 145-235 (262)
54 cd01857 HSR1_MMR1 HSR1/MMR1. 30.9 1.1E+02 0.0025 27.3 5.6 18 479-496 3-20 (141)
55 PRK06096 molybdenum transport 30.4 1.3E+02 0.0028 31.1 6.4 31 183-220 106-136 (284)
56 cd05294 LDH-like_MDH_nadp A la 29.9 64 0.0014 33.6 4.2 57 483-544 68-126 (309)
57 PF09851 SHOCT: Short C-termin 29.8 1.1E+02 0.0025 20.1 3.9 26 336-361 5-30 (31)
58 cd05291 HicDH_like L-2-hydroxy 29.4 38 0.00082 35.2 2.4 55 484-545 65-123 (306)
59 COG0761 lytB 4-Hydroxy-3-methy 29.3 1.8E+02 0.0038 30.0 6.9 84 450-556 175-261 (294)
60 TIGR02836 spore_IV_A stage IV 28.7 1.7E+02 0.0037 32.1 7.1 55 483-543 139-194 (492)
61 cd06557 KPHMT-like Ketopantoat 28.2 6.4E+02 0.014 25.5 11.3 28 319-346 96-127 (254)
62 PF01926 MMR_HSR1: 50S ribosom 28.0 1.5E+02 0.0032 25.3 5.6 45 479-537 71-115 (116)
63 PTZ00325 malate dehydrogenase; 27.4 49 0.0011 34.7 2.8 58 482-545 71-131 (321)
64 TIGR01763 MalateDH_bact malate 27.0 47 0.001 34.5 2.6 54 485-545 67-124 (305)
65 PLN00106 malate dehydrogenase 26.8 52 0.0011 34.6 2.9 57 481-543 80-139 (323)
66 PTZ00459 mucin-associated surf 26.4 37 0.00079 35.1 1.6 14 5-18 8-21 (291)
67 PRK00066 ldh L-lactate dehydro 26.3 51 0.0011 34.4 2.7 55 483-544 69-127 (315)
68 PF11471 Sugarporin_N: Maltopo 26.2 1.4E+02 0.003 23.1 4.4 22 49-70 27-48 (60)
69 PF02401 LYTB: LytB protein; 26.1 80 0.0017 32.5 4.0 124 390-548 123-253 (281)
70 TIGR01334 modD putative molybd 26.0 2.3E+02 0.005 29.1 7.3 31 183-220 105-135 (277)
71 PRK03692 putative UDP-N-acetyl 25.7 3E+02 0.0064 27.7 8.0 47 479-544 147-195 (243)
72 cd05293 LDH_1 A subgroup of L- 25.4 42 0.00092 35.0 1.9 56 484-544 68-125 (312)
73 PF04187 DUF399: Protein of un 25.4 1.2E+02 0.0027 29.7 5.1 46 478-535 4-49 (213)
74 PF09373 PMBR: Pseudomurein-bi 24.8 1E+02 0.0022 20.6 3.0 25 345-369 2-26 (33)
75 PF13407 Peripla_BP_4: Peripla 23.6 4.4E+02 0.0095 25.6 8.9 144 159-349 82-231 (257)
76 COG1159 Era GTPase [General fu 23.2 2.1E+02 0.0045 29.7 6.3 46 479-537 77-122 (298)
77 cd01894 EngA1 EngA1 subfamily. 23.1 2.6E+02 0.0057 24.5 6.6 43 482-537 71-113 (157)
78 TIGR03566 FMN_reduc_MsuE FMN r 23.0 1.8E+02 0.0039 27.2 5.6 55 476-541 57-113 (174)
79 PRK00170 azoreductase; Reviewe 22.9 1.6E+02 0.0036 27.9 5.4 54 477-541 76-144 (201)
80 PRK13534 7-cyano-7-deazaguanin 22.6 1.2E+02 0.0025 35.1 4.9 47 285-332 74-120 (639)
81 COG3317 NlpB Uncharacterized l 21.9 1.1E+02 0.0024 32.1 4.1 29 1-29 1-29 (342)
82 PRK12788 flgH flagellar basal 21.8 1.2E+02 0.0026 30.3 4.2 19 1-20 1-19 (234)
83 PRK07428 nicotinate-nucleotide 21.2 4.5E+02 0.0098 27.1 8.4 29 183-220 117-145 (288)
84 COG2003 RadC DNA repair protei 20.6 79 0.0017 31.3 2.6 103 179-300 105-208 (224)
85 PF06291 Lambda_Bor: Bor prote 20.6 39 0.00084 28.9 0.4 23 4-26 1-23 (97)
86 PRK01045 ispH 4-hydroxy-3-meth 20.6 2.7E+02 0.0059 28.9 6.6 80 478-577 201-282 (298)
87 cd01884 EF_Tu EF-Tu subfamily. 20.5 3.2E+02 0.007 26.1 6.9 17 480-496 81-97 (195)
88 PRK01008 queuine tRNA-ribosylt 20.4 82 0.0018 33.8 2.9 47 313-366 140-186 (372)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=2.5e-121 Score=1041.52 Aligned_cols=563 Identities=58% Similarity=1.048 Sum_probs=506.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCCCCchhhhhhhccccccCCC
Q 007737 23 RVDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLVSRLTLDEKISQLVNSAPAIPRLGIPAYEWWSEALHGVAGVGK 102 (591)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ll~~mtleEKv~ql~~~~~~~~~~gip~~~~~~~~~~gv~~~g~ 102 (591)
......++++|++ .+....||||+++++++|+++||++||+|||++||.....+++|+|||.+.||+|++||++..++
T Consensus 22 ~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~ 99 (779)
T PLN03080 22 KAADAHPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGP 99 (779)
T ss_pred ccccCCCCcCCCC--ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCC
Confidence 3344467889975 45566899999999999999999999999999999988889999999999999999999998888
Q ss_pred ccccc-CccCCCccCchHHHHHhcCCHHHHHHHHHHHHHHHHHhhhccccccceeeceeeccCCCCCCCccCCCCCCChH
Q 007737 103 GIFFN-GTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPL 181 (591)
Q Consensus 103 g~~~~-~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~e~~a~~~~~~~~Gi~~~aPv~dv~~~p~~gr~~rsfgeDp~ 181 (591)
|+++. +.+.++|.||.++++|||||+++++++|+++|+|+|++++.++. |+++|+|++||.|||+|||++|||||||+
T Consensus 100 g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~-G~~~~aP~vdi~rdPrwGR~~EtfGEDP~ 178 (779)
T PLN03080 100 GVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQA-GLTFWAPNINIFRDPRWGRGQETPGEDPA 178 (779)
T ss_pred ccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhcccccc-CcceeecccccccCCCcCccccCcCCCHH
Confidence 88774 34567899999999999999999999999999999999776666 88889999999999999999999999999
Q ss_pred HHHHHHHHHhchhccCcCCC----CCCCCCCceeeeeccccccCCCCCCCCcccccccccCHHHHHhhcCchHHHHHhcC
Q 007737 182 VTGKYAVSYVRGVQGDTFNG----GKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQG 257 (591)
Q Consensus 182 lv~~~a~a~v~G~q~~~g~~----~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~~~~l~pF~~ai~~g 257 (591)
++++|+.|||+|+|+. +.. +.+.++.+|++|+||||||+++.+.+..|...++.+++++|+|+||+||+++|++|
T Consensus 179 lv~~~a~a~V~GlQ~~-~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g 257 (779)
T PLN03080 179 VASAYSVEFVKGFQGG-KWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEG 257 (779)
T ss_pred HHHHHHHHHHHHhcCC-CcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhc
Confidence 9999999999999975 100 00113345999999999999987777788888889999999999999999999999
Q ss_pred CccEEEeeccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCCccCcchhHH
Q 007737 258 RASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSFLQK 337 (591)
Q Consensus 258 ~~~~vM~s~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~l~~~~~~ 337 (591)
.+++||||||.+||+|+|.|+++|++ ||+||||+|+|||||++|..+...++|..+.+|++++||+||+||+|...+.+
T Consensus 258 ~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~ 336 (779)
T PLN03080 258 KASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLR 336 (779)
T ss_pred CCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHH
Confidence 88899999999999999999999986 99999999999999999999988778877899999999999999999887788
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCHHHHHHHHHHHhhcceecccCCCCCCCC
Q 007737 338 HTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGLLPLP 417 (591)
Q Consensus 338 ~l~~av~~g~i~~~~i~~av~ril~~k~~~gl~~~~p~~~~~~~~~~~~~~~~~~~~la~e~a~~SivLLKN~~~~LPL~ 417 (591)
.+.+||++|++++++||+||+|||++|+++|+|+++|...+|.++....+++++|+++++|+|++|||||||++++|||+
T Consensus 337 ~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~ 416 (779)
T PLN03080 337 HTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLN 416 (779)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCC
Confidence 99999999999999999999999999999999995443334555556678899999999999999999999999999998
Q ss_pred CCCCceEEEEccCCcccccccCCCCCCCCCcCCHHHHHHhhhhcceecCCCCcccCC-cccHHHHHHHhhcCCEEEEEee
Q 007737 418 KSKSVSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVYYPGCDTVACS-SASIDKAVDIAKGADHVVLMMG 496 (591)
Q Consensus 418 ~~~~~kv~viGp~a~~~~~~~g~~sg~~~~~~t~~~~l~~~~~~v~~~~g~~~~~~~-~~~~~~~~~~a~~aD~vIv~~g 496 (591)
+.+.+||+||||+++....++|+|++.+++..+++++|+++..++.|..||....+. +..+++++++|++||+|||++|
T Consensus 417 ~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G 496 (779)
T PLN03080 417 KSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAG 496 (779)
T ss_pred CCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeC
Confidence 765679999999999988888889998888999999999988778899998655432 3568899999999999999999
Q ss_pred cCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeeeccccccCCcceEEEccCCChhHHHHHHHHHhc
Q 007737 497 LDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFG 576 (591)
Q Consensus 497 ~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~~~~~~~~v~Ail~~~~~g~~~g~AladvL~G 576 (591)
.+...++|+.||.+|.||+.|.+||++|++.+++|||||+++|+||+|+|+.+.++++|||++|||||++|+|+||||||
T Consensus 497 ~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG 576 (779)
T PLN03080 497 LDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFG 576 (779)
T ss_pred CCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcC
Confidence 98888999999999999999999999999864568999999999999999876778999999999999999999999999
Q ss_pred CCCCCccCcccc-cC
Q 007737 577 DHNPGEFTVIAV-EM 590 (591)
Q Consensus 577 ~~nPsGkLP~t~-p~ 590 (591)
++|||||||+|| |+
T Consensus 577 ~vnPsGkLPvT~~p~ 591 (779)
T PLN03080 577 DYNPGGRLPMTWYPE 591 (779)
T ss_pred CCCCCCcCeeeeccc
Confidence 999999999998 64
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=3.7e-103 Score=895.76 Aligned_cols=503 Identities=33% Similarity=0.523 Sum_probs=426.5
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHhhhcCCCC--------------------------------------CCCCCCCchhhh
Q 007737 49 TLPISQRARDLVSRLTLDEKISQLVNSAPA--------------------------------------IPRLGIPAYEWW 90 (591)
Q Consensus 49 ~~~~~~r~~~ll~~mtleEKv~ql~~~~~~--------------------------------------~~~~gip~~~~~ 90 (591)
+.+.++|+++++++||+|||+|||++.... .+++|||.+ +.
T Consensus 31 ~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~ 109 (765)
T PRK15098 31 PEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FA 109 (765)
T ss_pred CcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EE
Confidence 446899999999999999999999974211 123344444 22
Q ss_pred hhhccccccCCCcccccCccCCCccCchHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccccccee-eceeeccCCCCCC
Q 007737 91 SEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTF-WAPNINIFRDPRW 169 (591)
Q Consensus 91 ~~~~~gv~~~g~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~e~~a~~~~~~~~Gi~~-~aPv~dv~~~p~~ 169 (591)
.|+++| ..|.||+++++|||||+++++++|+++|+|+|++ |||+ ||||+||+|||+|
T Consensus 110 ~D~e~G---------------~~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~-------Gin~~laPv~Dv~r~p~~ 167 (765)
T PRK15098 110 YDVVHG---------------QRTVFPISLGLASSWDLDAVATVGRVSAYEAADD-------GLNMTWAPMVDISRDPRW 167 (765)
T ss_pred EeCCCC---------------ccccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc-------CCCEEeeCcccccCCCCc
Confidence 333332 2589999999999999999999999999999999 9999 9999999999999
Q ss_pred CccCCCCCCChHHHHHHHHHHhchhccCcCCCCCCCCCCceeeeeccccccCC-CCCCCCcccccccccCHHHHHhhcCc
Q 007737 170 GRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDL-DNWKGTTRYKFDARVTMQDLADTYQP 248 (591)
Q Consensus 170 gr~~rsfgeDp~lv~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~g~-~~~~~~~~~~~~~~~~~~~l~~~~l~ 248 (591)
||++|||||||+++++|+.|||+|+|+.+. ....+|++|+|||||||. +.+.. .....+++++|++.||+
T Consensus 168 gr~~rsfgeDP~lv~~~~~a~v~GlQ~~~~-----~~~~gV~a~~KHFpG~g~~~~~~~----~~~~~~~~~~l~e~~l~ 238 (765)
T PRK15098 168 GRASEGFGEDTYLTSIMGKTMVKAMQGKSP-----ADRYSVMTSVKHFALYGAVEGGRD----YNTVDMSPQRMFNDYLP 238 (765)
T ss_pred cccccCcCCCHHHHHHHHHHHHHHHcCCCC-----CCCCCEEEECcEEeCCCCcccCcc----CccCcCCHHHHHHHHHH
Confidence 999999999999999999999999998620 112249999999999994 33222 23355799999999999
Q ss_pred hHHHHHhcCCccEEEeeccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCC
Q 007737 249 PFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMD 328 (591)
Q Consensus 249 pF~~ai~~g~~~~vM~s~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D 328 (591)
||+++|++|. ++|||||+.+||+|+|+|+++|+++||+||||+|+|||||++|..+.. +++..+.+|++++||+||+|
T Consensus 239 PF~~ai~ag~-~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~D 316 (765)
T PRK15098 239 PYKAGLDAGS-GGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGID 316 (765)
T ss_pred HHHHHHHhCC-CEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCC
Confidence 9999999885 699999999999999999999999999999999999999999988864 66666889999999999999
Q ss_pred ccCcch-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC-C-C-CCcccccCHHHHHHHHHHHhhcc
Q 007737 329 VNCGSF-LQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPF-G-K-IGADVVCSPAHQVLALQAAQDGI 404 (591)
Q Consensus 329 ~~l~~~-~~~~l~~av~~g~i~~~~i~~av~ril~~k~~~gl~~~~p~~~~~-~-~-~~~~~~~~~~~~~la~e~a~~Si 404 (591)
|+|.+. +.+.+.++|++|.+++++||+||+|||++|+++|+|+ +|....- . . .....+.+++|++++++++++||
T Consensus 317 l~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~si 395 (765)
T PRK15098 317 MSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRLHRKEAREVARESL 395 (765)
T ss_pred cccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCHHHHHHHHHHHHhcE
Confidence 998754 3467999999999999999999999999999999999 5531100 0 0 01123456899999999999999
Q ss_pred eecccCCCCCCCCCCCCceEEEEccCCcccccccCCCC--CCCCCcCCHHHHHHhhhh---cceecCCCCccc-------
Q 007737 405 VLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYA--GPSCRSITPLQALQNYVE---NTVYYPGCDTVA------- 472 (591)
Q Consensus 405 vLLKN~~~~LPL~~~~~~kv~viGp~a~~~~~~~g~~s--g~~~~~~t~~~~l~~~~~---~v~~~~g~~~~~------- 472 (591)
|||||++++|||+++ +||+||||.++......|+|+ +.+.+.++++++|+++.. ++.|..||....
T Consensus 396 vLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~ 473 (765)
T PRK15098 396 VLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDF 473 (765)
T ss_pred EEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchh
Confidence 999999999999854 699999999988776677775 456678999999999763 467888874210
Q ss_pred -------------CCcccHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCC
Q 007737 473 -------------CSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCG 539 (591)
Q Consensus 473 -------------~~~~~~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~ 539 (591)
..+..+++++++|++||+|||++|.+...++|+.||.++.||+.|.+||+++++. +||||||+++|
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~~g 552 (765)
T PRK15098 474 LNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLMNG 552 (765)
T ss_pred hhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEeCC
Confidence 0123578899999999999999998878899999999999999999999999998 89999999999
Q ss_pred CeeeeccccccCCcceEEEccCCChhHHHHHHHHHhcCCCCCccCcccccCC
Q 007737 540 GPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGEFTVIAVEMQ 591 (591)
Q Consensus 540 ~P~dl~~~~~~~~v~Ail~~~~~g~~~g~AladvL~G~~nPsGkLP~t~p~~ 591 (591)
+||+|.|+. ++++|||++|+||+++|+|+||||||++|||||||+|||+.
T Consensus 553 ~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~p~~ 602 (765)
T PRK15098 553 RPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRS 602 (765)
T ss_pred ceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccceeCC
Confidence 999999863 58999999999999999999999999999999999999963
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-65 Score=543.16 Aligned_cols=307 Identities=36% Similarity=0.613 Sum_probs=260.2
Q ss_pred CCCCCchhhhhhhccccccCCCcccccCccCCCccCchHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccccccee-ece
Q 007737 81 RLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTF-WAP 159 (591)
Q Consensus 81 ~~gip~~~~~~~~~~gv~~~g~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~e~~a~~~~~~~~Gi~~-~aP 159 (591)
|+++|.+ +..|+++| +.++...++|.||+++++||+||+++++++|+.+|+|+|++ |||+ |||
T Consensus 57 r~~ipll-i~~D~egG--------~v~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~-------Gin~~fAP 120 (397)
T COG1472 57 RLGIPLL-IAIDQEGG--------RVQRLREGFTVFPAALALAATWDPELARKVGRVIAKELRAL-------GINLDFAP 120 (397)
T ss_pred ccCCCeE-EEEecCCC--------eeeeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc-------CCCccccc
Confidence 4556665 23344443 33332236899999999999999999999999999999999 9999 999
Q ss_pred eeccCCCCCCCc-cCCCCCCChHHHHHHHHHHhchhccCcCCCCCCCCCCceeeeeccccccC---CCCCCCCccccccc
Q 007737 160 NINIFRDPRWGR-GQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYD---LDNWKGTTRYKFDA 235 (591)
Q Consensus 160 v~dv~~~p~~gr-~~rsfgeDp~lv~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~g---~~~~~~~~~~~~~~ 235 (591)
|+||.|||+||| +.|+|||||++|+.|+.||++|||+. | |++|+||||||| .++|.+. .
T Consensus 121 vlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-g----------v~at~KHFpGhG~~~~dsh~~~------~ 183 (397)
T COG1472 121 VLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-G----------VAATIKHFPGHGAVEGDSHYGL------L 183 (397)
T ss_pred eeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-C----------ceeeeccccCCCCCcCCccccc------C
Confidence 999999999995 55669999999999999999999998 6 999999999998 3455441 3
Q ss_pred ccCHHHHHhhcCchHHHHHhcCC--ccEEEeeccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccC
Q 007737 236 RVTMQDLADTYQPPFESCVKQGR--ASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAK 313 (591)
Q Consensus 236 ~~~~~~l~~~~l~pF~~ai~~g~--~~~vM~s~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~ 313 (591)
.++++.|+|.|+.||+.+++.+. +.++|++|+.+|+.|||+|+++|+++||++|||+|+|||||++|.++...++
T Consensus 184 ~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g--- 260 (397)
T COG1472 184 PIDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHG--- 260 (397)
T ss_pred CCChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhcc---
Confidence 47899999999999999999995 6788888999999999999999999999999999999999999998765432
Q ss_pred CHHHHHHHHHHcCCCccCcch-hH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCHH
Q 007737 314 SPEDAVVDVLKAGMDVNCGSF-LQ-KHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPA 391 (591)
Q Consensus 314 ~~~ea~~~al~AG~D~~l~~~-~~-~~l~~av~~g~i~~~~i~~av~ril~~k~~~gl~~~~p~~~~~~~~~~~~~~~~~ 391 (591)
+..+++..+++|||||+|.+. .. ..+..+...+ +++++++++++|||++|+++|+|+ +| |.+ +
T Consensus 261 ~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~----~~~---------~ 325 (397)
T COG1472 261 SAADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NP----YSS---------E 325 (397)
T ss_pred CHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CC----Cch---------h
Confidence 677888889999999998643 22 2333333444 999999999999999999999999 55 321 8
Q ss_pred HHHHHHHHHhhcceecccCCCCCCCCCCCCceEEEEccCCcccccccCCCC
Q 007737 392 HQVLALQAAQDGIVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYA 442 (591)
Q Consensus 392 ~~~la~e~a~~SivLLKN~~~~LPL~~~~~~kv~viGp~a~~~~~~~g~~s 442 (591)
|.+++++++++|+|||||+..+||++ ++.++++++||.+... . |+|+
T Consensus 326 ~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 326 HRALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 99999999999999999998999999 5556999999999887 4 5555
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2.8e-62 Score=505.38 Aligned_cols=265 Identities=32% Similarity=0.532 Sum_probs=214.2
Q ss_pred CHHHHHHhhhcC----------------------------CCCCCCCCCCchhhhhhhccccccCCCcccccCccCCCcc
Q 007737 64 TLDEKISQLVNS----------------------------APAIPRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATS 115 (591)
Q Consensus 64 tleEKv~ql~~~----------------------------~~~~~~~gip~~~~~~~~~~gv~~~g~g~~~~~~~~~~t~ 115 (591)
|||||||||++. ....+++++|.+ +..|+++|+... ...++|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~--------~~~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR--------LGGGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS--------TTTTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec--------CCCcCcc
Confidence 899999999942 112567888887 456777765431 1113699
Q ss_pred CchHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccccccee-eceeeccCCCCCCCccCCCCCCChHHHHHHHHHHhchh
Q 007737 116 FPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTF-WAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGV 194 (591)
Q Consensus 116 fP~~~~laat~d~~l~~~~g~~~g~e~~a~~~~~~~~Gi~~-~aPv~dv~~~p~~gr~~rsfgeDp~lv~~~a~a~v~G~ 194 (591)
||+++++|+|||+++++++|+.+|+|++++ |||+ ||||+||.++|+|||+.|+|||||++|++|+.|||+|+
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~-------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~ 144 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL-------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGL 144 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT-------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh-------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999 9999 99999999999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCCCceeeeeccccccC-CCCCCCCcccccccccCHHHHHhhcCchHHHHHhcCCccEEEeeccccCCcc
Q 007737 195 QGDTFNGGKLKGKLQASACCKHFTAYD-LDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIP 273 (591)
Q Consensus 195 q~~~g~~~~~~~~~~v~a~~KHFpg~g-~~~~~~~~~~~~~~~~~~~~l~~~~l~pF~~ai~~g~~~~vM~s~~~v~g~p 273 (591)
|+. | |++|+||||||+ .|+|.+.+.. .++.++|++.||+||+.+|+++.+.+||+||+.+|++|
T Consensus 145 q~~-g----------v~~~~KHFpG~~~~d~~~~~~~~----~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~p 209 (299)
T PF00933_consen 145 QGA-G----------VAATAKHFPGHGAQDSHRDLPSV----DVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTP 209 (299)
T ss_dssp HCT-T----------SEEEEEEETTGGCSCTTTTTEEE----E--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEE
T ss_pred ccc-c----------cccccccccccccccccccccee----cCCcccccchhcccchhcccccccceeeeeccccCCcc
Confidence 999 6 999999999985 6777766554 36899999999999999994444569999999999999
Q ss_pred cccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCCccCcch----hHHHHHHHHHcCCCC
Q 007737 274 SCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSF----LQKHTKAAVKQKKLP 349 (591)
Q Consensus 274 a~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~l~~~----~~~~l~~av~~g~i~ 349 (591)
+|+|+++++++||++|||+|+|||||++|+++... + +..+++++||+||+||+|.+. .++.|.++|++|.++
T Consensus 210 as~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~--~--~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~ 285 (299)
T PF00933_consen 210 ASLSPKILTDLLRNELGFDGVVISDDLEMGALSSN--Y--SIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRIS 285 (299)
T ss_dssp GGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCC--T--THHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSG
T ss_pred chhhhccchhhCcCcccCCCeEecccchHHHHHhc--c--ccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999752 2 588999999999999998743 258999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007737 350 ESEIDRALHNLFSV 363 (591)
Q Consensus 350 ~~~i~~av~ril~~ 363 (591)
++|||+||+|||++
T Consensus 286 ~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 286 EERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=2.5e-50 Score=419.17 Aligned_cols=240 Identities=21% Similarity=0.217 Sum_probs=200.2
Q ss_pred CCCchhhhhhhccccccCCCcccccCccCCCccCchHHHHHhcCC------HHHHHHHHHHHHHHHHHhhhcccccccee
Q 007737 83 GIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFD------SYLWYRIGQAIGLEARALYNAGQAIGMTF 156 (591)
Q Consensus 83 gip~~~~~~~~~~gv~~~g~g~~~~~~~~~~t~fP~~~~laat~d------~~l~~~~g~~~g~e~~a~~~~~~~~Gi~~ 156 (591)
++|.+ +..|+++| ++++...++|.||+++++|++|| +++++++|+++|+|+|++ |||+
T Consensus 54 ~~pll-i~iD~EgG--------~v~rl~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~-------Gin~ 117 (337)
T PRK05337 54 RPPLL-IAVDQEGG--------RVQRFREGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC-------GIDL 117 (337)
T ss_pred CCCCE-EEEecCCC--------EeeecCCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh-------CCCc
Confidence 46666 44454444 33444457899999999999999 999999999999999999 9999
Q ss_pred -eceeeccCCCCCCCccCCCCCCChHHHHHHHHHHhchhccCcCCCCCCCCCCceeeeeccccccCC---CCCCCCcccc
Q 007737 157 -WAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDL---DNWKGTTRYK 232 (591)
Q Consensus 157 -~aPv~dv~~~p~~gr~~rsfgeDp~lv~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~g~---~~~~~~~~~~ 232 (591)
|+||+||.+++.| |+.|+|||||++|++|+.||++|+|+. | |++|+|||||||. |+|...+...
T Consensus 118 ~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-g----------v~~~~KHFpG~G~~~~dsh~~~~~~~ 185 (337)
T PRK05337 118 SFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-G----------MAATGKHFPGHGAVEADSHVETPVDE 185 (337)
T ss_pred cccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-C----------CEEEecccCCCCCCcCCCCCCCCCCC
Confidence 9999999854333 789999999999999999999999998 6 9999999999994 4565554332
Q ss_pred cccccCHHHHHhhcCchHHHHHhcCCccEEEee---ccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccc
Q 007737 233 FDARVTMQDLADTYQPPFESCVKQGRASGIMCA---YNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAE 309 (591)
Q Consensus 233 ~~~~~~~~~l~~~~l~pF~~ai~~g~~~~vM~s---~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~ 309 (591)
.+.++|++.||+||+.+|++| +.+||+| |+.+|+.|||+|+++|+++||+||||+|+|||||++|.++..
T Consensus 186 ----~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~-- 258 (337)
T PRK05337 186 ----RPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV-- 258 (337)
T ss_pred ----CCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh--
Confidence 467899999999999999998 5699999 778899999999999999999999999999999999987632
Q ss_pred cccCCHHHHHHHHHHcCCCccCcch---hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Q 007737 310 GYAKSPEDAVVDVLKAGMDVNCGSF---LQKHTKAAVKQKKLPESEIDRALHNLFSVRMRL 367 (591)
Q Consensus 310 ~~~~~~~ea~~~al~AG~D~~l~~~---~~~~l~~av~~g~i~~~~i~~av~ril~~k~~~ 367 (591)
..+.++++++||+|||||+|.+. ....+.+++.+ +++.+|+++++.+.
T Consensus 259 --~~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 259 --AGDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred --cCCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 23788999999999999987643 34555666644 67788888888663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=99.97 E-value=3.5e-30 Score=256.26 Aligned_cols=180 Identities=41% Similarity=0.566 Sum_probs=135.4
Q ss_pred ceecccCCCCCCCCCCCCceEEEEccCCcccccccCCCC-CCCCCcCCHHHHHHhhhhcceec--CCCCcccCCcccHHH
Q 007737 404 IVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYA-GPSCRSITPLQALQNYVENTVYY--PGCDTVACSSASIDK 480 (591)
Q Consensus 404 ivLLKN~~~~LPL~~~~~~kv~viGp~a~~~~~~~g~~s-g~~~~~~t~~~~l~~~~~~v~~~--~g~~~~~~~~~~~~~ 480 (591)
||||||++++|||++++. ||+|+|+.+......+++++ ..+.+..+++++|++++.+.... .++. ...++..+++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 78 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD-AVDDDEGIDE 78 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC-CCCCCSCHHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc-ccccccchHH
Confidence 799999999999998643 99999999998665555443 34556789999999988653322 1111 1123467889
Q ss_pred HHHHhhcCCEEEEEeecCCCCcccc--------CCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeeeccccccCC
Q 007737 481 AVDIAKGADHVVLMMGLDQTQEKEE--------LDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRN 552 (591)
Q Consensus 481 ~~~~a~~aD~vIv~~g~~~~~~~Eg--------~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~~~~~~~~ 552 (591)
+++.++++|+|||+++ +.++|| .||.++.++..|.+||+++++. ++|+|||+++++||++.++. ++
T Consensus 79 ~~~~~~~aD~vIv~~~---~~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~-~~~~Ivvv~~~~P~~l~~~~--~~ 152 (227)
T PF01915_consen 79 AVAAAKEADVVIVFVG---RPSGEGNDNNTEGESDRSDLALPANQQELIKAVAAA-GKKVIVVVNSGNPYDLDPWE--DN 152 (227)
T ss_dssp HHHHHHCSSEEEEEEE---TTSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHH-HSCEEEEEE-SSGGCGHCCH--HC
T ss_pred HHHHhhcCCEEEEecc---ccccccccccccccCCcccccchhhHHHHHHHHHHh-cCCeEEEEecCCccccHHHH--hh
Confidence 9999999999999998 234444 5899999999999999999998 79999999999999997654 48
Q ss_pred cceEEEccCCChhHHHHHHHHHhcCCCCCccCcccccCC
Q 007737 553 IGSILWAGYPGEAGAVALAEVIFGDHNPGEFTVIAVEMQ 591 (591)
Q Consensus 553 v~Ail~~~~~g~~~g~AladvL~G~~nPsGkLP~t~p~~ 591 (591)
++|||++|++|+++++|++|||||++||+||||+|||+.
T Consensus 153 ~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p~~ 191 (227)
T PF01915_consen 153 VDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIPKS 191 (227)
T ss_dssp -SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BESS
T ss_pred hceEeeccccchHHHHHHHHHHcCCCCCCCCcceeccCC
Confidence 999999999999999999999999999999999999863
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=70.83 E-value=1.7e+02 Score=32.15 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHhcCCccEEEeeccccCC-----cccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcC-
Q 007737 253 CVKQGRASGIMCAYNRVNG-----IPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAG- 326 (591)
Q Consensus 253 ai~~g~~~~vM~s~~~v~g-----~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG- 326 (591)
.|+++.+ .+|.+.+++.| .-++-++.+++.+|+-=+.. |.-+.. +.|=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~Ae----------------pGEFs~RAFLNgK 121 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAE----------------PGEFSKRAFLNGK 121 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecC----------------CCcchHHHHhcCC
Confidence 4556665 88888777765 57788888888877644332 122222 333344555555
Q ss_pred CCccCc--------chhHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHc
Q 007737 327 MDVNCG--------SFLQKHTKAAVK--QKKLPESEIDRALHNLFSVRMRL 367 (591)
Q Consensus 327 ~D~~l~--------~~~~~~l~~av~--~g~i~~~~i~~av~ril~~k~~~ 367 (591)
+|+.-. .........|++ +|.+ .+++++-.++++.+....
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGAL-SQLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHh
Confidence 565421 111233445554 4666 667888888888877664
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=64.50 E-value=17 Score=39.44 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 007737 479 DKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (591)
Q Consensus 479 ~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~ 537 (591)
+++..++++||++|+++.. .+| +.+....+.+-+... +||+|+|++
T Consensus 75 ~Qa~~Ai~eADvilfvVD~-----~~G-------it~~D~~ia~~Lr~~-~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDG-----REG-------ITPADEEIAKILRRS-KKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeC-----CCC-------CCHHHHHHHHHHHhc-CCCEEEEEE
Confidence 4566678899999998852 222 345556666666655 799999998
No 9
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.75 E-value=57 Score=30.76 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=47.1
Q ss_pred ceEEEEccCCcccccccCCCCCCCCCcCCHHHHHHhhhhccee---cCCCCcccCCcccHHHHHHHh--hcCCEEEEEee
Q 007737 422 VSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVY---YPGCDTVACSSASIDKAVDIA--KGADHVVLMMG 496 (591)
Q Consensus 422 ~kv~viGp~a~~~~~~~g~~sg~~~~~~t~~~~l~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~a--~~aD~vIv~~g 496 (591)
.+|+++|...... ....+.|++.++++.. ..|+- .....++.++.+ .++|+|+|++|
T Consensus 47 ~~v~llG~~~~~~--------------~~~~~~l~~~yp~l~i~g~~~g~~----~~~~~~~i~~~I~~~~pdiv~vglG 108 (171)
T cd06533 47 LRVFLLGAKPEVL--------------EKAAERLRARYPGLKIVGYHHGYF----GPEEEEEIIERINASGADILFVGLG 108 (171)
T ss_pred CeEEEECCCHHHH--------------HHHHHHHHHHCCCcEEEEecCCCC----ChhhHHHHHHHHHHcCCCEEEEECC
Confidence 5899998543321 1233456666665432 22221 112222234444 46899998887
Q ss_pred cCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 497 LDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 497 ~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
. +.|..++.+..+. -...|+ +..|+.+|.
T Consensus 109 ~-----------------PkQE~~~~~~~~~-l~~~v~-~~vG~~~d~ 137 (171)
T cd06533 109 A-----------------PKQELWIARHKDR-LPVPVA-IGVGGSFDF 137 (171)
T ss_pred C-----------------CHHHHHHHHHHHH-CCCCEE-EEeceeeEe
Confidence 3 5788999888877 323333 334666664
No 10
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=51.39 E-value=14 Score=38.57 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=37.6
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCC--ChhHHHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVL--PGRQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l--~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
+..++||+||++.|.. .+.|.+|.+|-- ..-..++.+++.+. +.+.|+++. +||+|+.
T Consensus 65 ~~~~~aDiVvitAG~p---rKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVP---RKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCC---CCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEe-cCcHHHH
Confidence 4679999999998854 356666755421 01234566677777 556666656 5899874
No 11
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=49.60 E-value=10 Score=39.67 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=34.1
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChh----HHHHHHHHHhhCCCC-EEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGR----QQELITRVAEAAKKP-VILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~----q~~li~~v~~~~~kp-vIvV~~~~~P~dl~ 545 (591)
+..++||+||++.|.. ..+|.+|.++- .. -++++.++.+. .+| .++++. +||.|+.
T Consensus 56 ~~~~daDiVVitaG~~---~k~g~tR~dll--~~N~~I~~~i~~~i~~~-a~~~~ivivv-tNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVP---LKPGEVRADLL--TKNTPIFKATGEALSEY-AKPTVKVLVI-GNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCC---CCcCCCHHHHH--HHHHHHHHHHHHHHHhh-CCCCeEEEEe-CCchHHH
Confidence 4689999999988753 23455664431 11 13455566666 445 545444 6899874
No 12
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=49.53 E-value=89 Score=34.24 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=33.3
Q ss_pred ccHHHHHHHhhc---CCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeeecc
Q 007737 476 ASIDKAVDIAKG---ADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITF 546 (591)
Q Consensus 476 ~~~~~~~~~a~~---aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~~ 546 (591)
.++..+.+.+.. .|++||+=|. ....+|. +=+...++++++.. ..|||. .. |-=.|.+.
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~~-~~Pvis-~i-GHe~D~ti 234 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFLS-KIPIIS-AV-GHETDFTI 234 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHcC-CCCEEE-ec-CcCCCccH
Confidence 344445544443 6888886442 1222221 22567889999887 788764 33 55555543
No 13
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=49.48 E-value=82 Score=34.46 Aligned_cols=59 Identities=27% Similarity=0.312 Sum_probs=34.0
Q ss_pred ccHHHHHHHhhc--CCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeeecc
Q 007737 476 ASIDKAVDIAKG--ADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITF 546 (591)
Q Consensus 476 ~~~~~~~~~a~~--aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~~ 546 (591)
.++..+...+.. .|++|++=|. ....+|. +=+...+++++++. ..|||. .. |-=.|.+.
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGG--------GS~eDL~-~Fn~e~v~~ai~~~-~~Pvis-~I-GHE~D~tl 239 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGG--------GSLEDLW-AFNDEAVARAIAAS-RIPVIS-AV-GHETDFTI 239 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCC--------CCHHHhh-ccCcHHHHHHHHcC-CCCEEE-ec-cCCCCccH
Confidence 345555555554 5988876442 1222221 22567899999987 789654 33 55555543
No 14
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=49.03 E-value=14 Score=38.83 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=36.6
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
.+..++||+||++.|.. .++|.+|.++--. .--.++++++.+.+.++.|+++. +||+|+.
T Consensus 74 ~~~~~daDvVVitAG~~---~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 135 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFP---RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTN 135 (323)
T ss_pred HHHhCCCCEEEEeCCCC---CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 35789999999998853 2456666543110 11234566667763236666666 5899873
No 15
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.61 E-value=1.1e+02 Score=31.54 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=20.9
Q ss_pred HHHHHHHHhchhccCcCCCCCCCCCCceeeeecccccc
Q 007737 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (591)
Q Consensus 183 v~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~ 220 (591)
++.+...|++-+.+. + -.|..|=|++||.
T Consensus 118 IAT~T~~~V~~~~~~-~--------~~i~~TRKT~PG~ 146 (290)
T PRK06559 118 IASMTAAYVEALGDD-R--------IKVFDTRKTTPNL 146 (290)
T ss_pred HHHHHHHHHHHhcCC-C--------eEEEeecCCCCcc
Confidence 666777777777433 2 2599999999994
No 16
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.54 E-value=1.2e+02 Score=25.58 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.2
Q ss_pred HHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEE
Q 007737 481 AVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILV 535 (591)
Q Consensus 481 ~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV 535 (591)
..+..+++|+||++++.- + =.....+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---s------------H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---S------------HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---C------------hHHHHHHHHHHHHcCCcEEEE
Confidence 556889999999987521 1 133456677776668898764
No 17
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.01 E-value=85 Score=29.89 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=25.4
Q ss_pred hcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 486 KGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 486 ~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
.++|+++|.+|. +.|..++.+.... ....|+ +..|+-+|.
T Consensus 99 s~~dil~VglG~-----------------PkQE~~~~~~~~~-~~~~v~-~gvGg~fd~ 138 (177)
T TIGR00696 99 SGAGIVFVGLGC-----------------PKQEIWMRNHRHL-KPDAVM-IGVGGSFDV 138 (177)
T ss_pred cCCCEEEEEcCC-----------------cHhHHHHHHhHHh-CCCcEE-EEeceeeee
Confidence 468988887773 5788888877655 223333 344666664
No 18
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=47.28 E-value=74 Score=24.50 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHhhC-CCCEEEEEe
Q 007737 515 GRQQELITRVAEAA-KKPVILVLL 537 (591)
Q Consensus 515 ~~q~~li~~v~~~~-~kpvIvV~~ 537 (591)
++|.+|.+.+.... ++|+|+|++
T Consensus 32 e~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 32 EEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 68999999998874 689998876
No 19
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=45.41 E-value=19 Score=22.75 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 007737 3 FHKLSLVFPLLCLCFTSL 20 (591)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (591)
++|+.+.++++++ +++|
T Consensus 7 mKkil~~l~a~~~-LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALFM-LAGC 23 (25)
T ss_pred HHHHHHHHHHHHH-Hhhc
Confidence 3455444444444 4444
No 20
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.14 E-value=79 Score=29.76 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=47.6
Q ss_pred ceEEEEccCCcccccccCCCCCCCCCcCCHHHHHHhhhhccee---cCCCCcccCCcccHHHHHHHhh--cCCEEEEEee
Q 007737 422 VSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVY---YPGCDTVACSSASIDKAVDIAK--GADHVVLMMG 496 (591)
Q Consensus 422 ~kv~viGp~a~~~~~~~g~~sg~~~~~~t~~~~l~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~a~--~aD~vIv~~g 496 (591)
.+|+++|...... ....+.|++.++++.. ..+.- +..+.++.++.+. ++|+++|.+|
T Consensus 49 ~~ifllG~~~~~~--------------~~~~~~l~~~yP~l~ivg~~~g~f----~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 49 KRIFLLGGSEEVL--------------EKAAANLRRRYPGLRIVGYHHGYF----DEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred CeEEEEeCCHHHH--------------HHHHHHHHHHCCCeEEEEecCCCC----ChhhHHHHHHHHHHcCCCEEEEECC
Confidence 5899998543321 1233456666655332 22221 2244455555554 5788888776
Q ss_pred cCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 497 LDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 497 ~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
. +.|..++....+..+.+ |++ ..|..+|.
T Consensus 111 ~-----------------PkQE~~~~~~~~~l~~~-v~i-~vG~~~d~ 139 (172)
T PF03808_consen 111 A-----------------PKQERWIARHRQRLPAG-VII-GVGGAFDF 139 (172)
T ss_pred C-----------------CHHHHHHHHHHHHCCCC-EEE-EECchhhh
Confidence 3 47888888887763333 443 44656654
No 21
>PRK05442 malate dehydrogenase; Provisional
Probab=43.24 E-value=21 Score=37.51 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=34.7
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
.+..++||+||++.|.. ..+|.+|.++- ..- .++.+++.+.+++..|+++. +||+|+.
T Consensus 75 y~~~~daDiVVitaG~~---~k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 136 (326)
T PRK05442 75 NVAFKDADVALLVGARP---RGPGMERKDLL--EANGAIFTAQGKALNEVAARDVKVLVV-GNPANTN 136 (326)
T ss_pred HHHhCCCCEEEEeCCCC---CCCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHH
Confidence 35789999999988743 23565665431 112 23455666642345555555 5899874
No 22
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=42.88 E-value=60 Score=23.62 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=25.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Q 007737 339 TKAAVKQKKLPESEIDRALHNLFSVRMRLG 368 (591)
Q Consensus 339 l~~av~~g~i~~~~i~~av~ril~~k~~~g 368 (591)
.+..++...-+.+.|+..|..+|.+|..+|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 344556677789999999999999999987
No 23
>PLN00135 malate dehydrogenase
Probab=42.03 E-value=19 Score=37.55 Aligned_cols=60 Identities=18% Similarity=0.354 Sum_probs=35.7
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
.+..++||+||++.|.. ..+|.+|.++--. .--.++++++.+.+++..|+++. +||+|+.
T Consensus 53 y~~~~daDiVVitAG~~---~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv~ 114 (309)
T PLN00135 53 VEACKGVNIAVMVGGFP---RKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANTN 114 (309)
T ss_pred HHHhCCCCEEEEeCCCC---CCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHHH
Confidence 35689999999998854 2345556433100 01234556666622566666666 5899874
No 24
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.90 E-value=1.4e+02 Score=30.62 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=60.3
Q ss_pred HHHHHHHHhchhccCcCCCCCCCCCCceeeeeccccccCCCCCCCCcccccccccCHHHHHhhcCchHHHHHhcC-----
Q 007737 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQG----- 257 (591)
Q Consensus 183 v~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~~~~l~pF~~ai~~g----- 257 (591)
++.+.+.||+-+.+.+. .|.+|=|--||- +-++ |.|+..|
T Consensus 109 IAT~T~~~V~~~~~~~~---------~i~~TRKT~Pgl-------------------R~le-------KyAV~~GGG~nH 153 (280)
T COG0157 109 IATATARMVEALRGTNV---------RIADTRKTTPGL-------------------RLLE-------KYAVRAGGGDNH 153 (280)
T ss_pred HHHHHHHHHHHhhccCc---------EEEeccCCCccH-------------------HHHH-------HHHHHhcCCccc
Confidence 67777888888887732 588888877773 1111 1233332
Q ss_pred ---CccEEEeeccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCCccCcch
Q 007737 258 ---RASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSF 334 (591)
Q Consensus 258 ---~~~~vM~s~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~l~~~ 334 (591)
..++||.-=|.+.-.. +... .++ -+|...+|.=-|--.. .+.+| +.+|++||.|++|...
T Consensus 154 R~gLsDavliKDNHia~~g-~i~~-Av~-~aR~~~~~~~kIEVEv-------------esle~-~~eAl~agaDiImLDN 216 (280)
T COG0157 154 RFGLSDAVLIKDNHIAAAG-SITE-AVR-RARAAAPFTKKIEVEV-------------ESLEE-AEEALEAGADIIMLDN 216 (280)
T ss_pred cCCCcceEEehhhHHHHhc-cHHH-HHH-HHHHhCCCCceEEEEc-------------CCHHH-HHHHHHcCCCEEEecC
Confidence 3457777533332111 2222 233 3666677744221111 14444 4689999999998654
Q ss_pred h-HHHHHHHHH
Q 007737 335 L-QKHTKAAVK 344 (591)
Q Consensus 335 ~-~~~l~~av~ 344 (591)
+ .+.++++++
T Consensus 217 m~~e~~~~av~ 227 (280)
T COG0157 217 MSPEELKEAVK 227 (280)
T ss_pred CCHHHHHHHHH
Confidence 3 455555554
No 25
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.82 E-value=1.5e+02 Score=30.32 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCCccCcch-hHHHHHHHH
Q 007737 279 NLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSF-LQKHTKAAV 343 (591)
Q Consensus 279 ~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~l~~~-~~~~l~~av 343 (591)
..+.. +|.+..|.=.|+.+.- +.+| +..|+++|+|+++... ..+.+.++|
T Consensus 170 ~~v~~-~k~~~p~~~~I~VEv~-------------tlee-a~~A~~~GaDiI~LDn~~~e~l~~~v 220 (273)
T PRK05848 170 EFIQH-ARKNIPFTAKIEIECE-------------SLEE-AKNAMNAGADIVMCDNMSVEEIKEVV 220 (273)
T ss_pred HHHHH-HHHhCCCCceEEEEeC-------------CHHH-HHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 34443 5888888656766663 4444 4678999999997532 234444444
No 26
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.70 E-value=22 Score=37.41 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=35.2
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
.+..++||+||++.|.. ..+|.+|.++-.. .--+++..++.+.+++..|+++. +||+|+.
T Consensus 71 ~~~~~~aDiVVitAG~~---~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 132 (323)
T cd00704 71 EEAFKDVDVAILVGAFP---RKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN 132 (323)
T ss_pred HHHhCCCCEEEEeCCCC---CCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence 35789999999988753 2345555443110 01234555666652356666555 6899863
No 27
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=41.35 E-value=34 Score=29.63 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=10.5
Q ss_pred chhhhhHHHHHHHHHHHhhccc
Q 007737 2 IFHKLSLVFPLLCLCFTSLLTR 23 (591)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (591)
+.||..+++++.++|.+|+...
T Consensus 3 ~~mk~~~~l~~~l~LS~~s~~~ 24 (104)
T PRK14864 3 MVMRRFASLLLTLLLSACSALQ 24 (104)
T ss_pred hHHHHHHHHHHHHHHhhhhhcc
Confidence 4455555554444444444443
No 28
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=41.27 E-value=93 Score=32.36 Aligned_cols=107 Identities=25% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCCCCCCceEEEEccCCcccccccCCCCCCCCCcCCHHHHHHhhhhcceecCCCCcccCCc--ccHHHHHHHhh-----
Q 007737 414 LPLPKSKSVSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVYYPGCDTVACSS--ASIDKAVDIAK----- 486 (591)
Q Consensus 414 LPL~~~~~~kv~viGp~a~~~~~~~g~~sg~~~~~~t~~~~l~~~~~~v~~~~g~~~~~~~~--~~~~~~~~~a~----- 486 (591)
+||..- .++|+||....... +-.+...++.+.+.+.+......++... .++..+.+.+.
T Consensus 8 ~~lP~~-p~~I~vITs~~gAa-------------~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~ 73 (319)
T PF02601_consen 8 KPLPKF-PKRIAVITSPTGAA-------------IQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQA 73 (319)
T ss_pred CCCCCC-CCEEEEEeCCchHH-------------HHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhcccc
Confidence 444332 36999996432111 2345556666554322111111121111 34555555543
Q ss_pred -cCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeeecc
Q 007737 487 -GADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITF 546 (591)
Q Consensus 487 -~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~~ 546 (591)
..|++|++=|. ....+|. +=+...++++++.. ..|||. .. |-=.|.+.
T Consensus 74 ~~~Dviii~RGG--------Gs~eDL~-~FN~e~varai~~~-~~Pvis-aI-GHe~D~ti 122 (319)
T PF02601_consen 74 DDFDVIIIIRGG--------GSIEDLW-AFNDEEVARAIAAS-PIPVIS-AI-GHETDFTI 122 (319)
T ss_pred ccccEEEEecCC--------CChHHhc-ccChHHHHHHHHhC-CCCEEE-ec-CCCCCchH
Confidence 46888875442 1222221 22567899999987 788654 33 55555443
No 29
>PRK05086 malate dehydrogenase; Provisional
Probab=41.14 E-value=25 Score=36.71 Aligned_cols=56 Identities=27% Similarity=0.425 Sum_probs=33.8
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCCh---hHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG---RQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~---~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
+..+++|+||++.|... .++.+|.++- .. --.++++++.+. +.+.++++. .||.|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dll-~~N~~i~~~ii~~i~~~-~~~~ivivv-sNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDLF-NVNAGIVKNLVEKVAKT-CPKACIGII-TNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHh-CCCeEEEEc-cCchHH
Confidence 45688999999998642 2333454321 11 234566777776 555555544 689974
No 30
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=40.05 E-value=18 Score=39.62 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=34.6
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHh-hCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAE-AAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~-~~~kpvIvV~~~~~P~dl~ 545 (591)
+..++||+||++.|.. .++|.+|.++- ..- .++.+++.+ . +++.|+++. +||.|+.
T Consensus 172 e~~kdaDiVVitAG~p---rkpG~tR~dLl--~~N~~I~k~i~~~I~~~a-~p~~ivIVV-sNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKP---RGPGMERADLL--DINGQIFAEQGKALNEVA-SRNVKVIVV-GNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCC---CCCCCCHHHHH--HHHHHHHHHHHHHHHHhc-CCCeEEEEc-CCcHHHH
Confidence 5689999999987753 23566665431 111 234555666 4 566666655 6998874
No 31
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=39.18 E-value=6.1 Score=36.12 Aligned_cols=55 Identities=29% Similarity=0.537 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQ----ELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~----~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
+..++||+||++.|.. ..+|.+|.++- .... ++.+++.+. +++.++++. .||.|+
T Consensus 65 ~~~~~aDivvitag~~---~~~g~sR~~ll--~~N~~i~~~~~~~i~~~-~p~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVP---RKPGMSRLDLL--EANAKIVKEIAKKIAKY-APDAIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTS---SSTTSSHHHHH--HHHHHHHHHHHHHHHHH-STTSEEEE--SSSHHH
T ss_pred cccccccEEEEecccc---ccccccHHHHH--HHhHhHHHHHHHHHHHh-CCccEEEEe-CCcHHH
Confidence 3578999999887753 24555554331 2222 345556666 444555545 589986
No 32
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=39.16 E-value=31 Score=38.32 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=34.2
Q ss_pred HhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCCccCc
Q 007737 285 ARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCG 332 (591)
Q Consensus 285 LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~l~ 332 (591)
|++=+||+|.|+||.++.+...- .....++++.+.---.-|.|+.+.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~-g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVY-GDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEc-CCccCCHHHHHHHHHHhCCCEEeE
Confidence 66678999999999997654431 122347888777677789999863
No 33
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=39.16 E-value=32 Score=35.94 Aligned_cols=56 Identities=30% Similarity=0.476 Sum_probs=34.3
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChh---HHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGR---QQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~---q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
+..++||+||++.|.. ..+|.+|.++- ..+ -.+..+++.+. +...|+++. .||.|.
T Consensus 63 ~~~~daDivvitaG~~---~~~g~~R~dll-~~N~~I~~~i~~~i~~~-~p~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVP---RKPGMTRDDLF-NVNAGIVKDLVAAVAES-CPKAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCC---CCCCccHHHHH-HHhHHHHHHHHHHHHHh-CCCeEEEEe-cCchhh
Confidence 5789999999998853 23455665431 111 12344556666 456665555 689984
No 34
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=38.58 E-value=21 Score=36.99 Aligned_cols=58 Identities=29% Similarity=0.369 Sum_probs=35.2
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
+..++||+||++.|.. ..+|.+|.++... +--.++.+++.+. +++.++++. +||.|+.
T Consensus 62 ~~l~~aDiVIitag~p---~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~-sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAP---RKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVV-SNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc-cChHHHH
Confidence 4789999999998854 2355566543210 1123455566666 556665555 6898763
No 35
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.50 E-value=1.5e+02 Score=30.54 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHHHHhchhccCcCCCCCCCCCCceeeeecccccc
Q 007737 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (591)
Q Consensus 183 v~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~ 220 (591)
++.+...||+-+.+.+- .|..|=|++||.
T Consensus 110 IAT~T~~~V~~~~~~~~---------~i~~TRKT~PG~ 138 (281)
T PRK06543 110 IATLTAAFVDAVNGTRA---------RIVDTRKTTPGL 138 (281)
T ss_pred HHHHHHHHHHHhcCCCC---------EEEeCCCCCCcc
Confidence 66677777777765422 599999999994
No 36
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.29 E-value=23 Score=37.24 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=34.9
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCC-CCEEEEEeCCCeeeec
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAK-KPVILVLLCGGPVDIT 545 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~-kpvIvV~~~~~P~dl~ 545 (591)
.+..++||+||++.|.. ..+|.+|.++- ..- +++..++.+. + +..|+++. +||+|+.
T Consensus 73 ~~~~~daDivvitaG~~---~k~g~tR~dll--~~N~~i~~~i~~~i~~~-~~~~~iiivv-sNPvD~~ 134 (322)
T cd01338 73 NVAFKDADWALLVGAKP---RGPGMERADLL--KANGKIFTAQGKALNDV-ASRDVKVLVV-GNPCNTN 134 (322)
T ss_pred HHHhCCCCEEEEeCCCC---CCCCCcHHHHH--HHHHHHHHHHHHHHHhh-CCCCeEEEEe-cCcHHHH
Confidence 35689999999988753 23455664431 122 2345566666 4 36665555 6899874
No 37
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=37.56 E-value=56 Score=32.60 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=52.1
Q ss_pred hHHHHHhcCCccEEEeeccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCC
Q 007737 249 PFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMD 328 (591)
Q Consensus 249 pF~~ai~~g~~~~vM~s~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D 328 (591)
-.|++.+.|.. +||.--..|..----.++..|. ++|++. +=-||-|.+ | + ++.++ ..|++-|+|
T Consensus 136 ~akrL~d~Gca-avMPlgsPIGSg~Gi~n~~~l~-~i~~~~--~vPvIvDAG----i------G-~pSda-a~AMElG~d 199 (247)
T PF05690_consen 136 LAKRLEDAGCA-AVMPLGSPIGSGRGIQNPYNLR-IIIERA--DVPVIVDAG----I------G-TPSDA-AQAMELGAD 199 (247)
T ss_dssp HHHHHHHTT-S-EBEEBSSSTTT---SSTHHHHH-HHHHHG--SSSBEEES--------------SHHHH-HHHHHTT-S
T ss_pred HHHHHHHCCCC-EEEecccccccCcCCCCHHHHH-HHHHhc--CCcEEEeCC----C------C-CHHHH-HHHHHcCCc
Confidence 45677778875 9999877774333345677776 678887 456666874 2 1 55564 589999999
Q ss_pred ccCcch----------hHHHHHHHHHcCC
Q 007737 329 VNCGSF----------LQKHTKAAVKQKK 347 (591)
Q Consensus 329 ~~l~~~----------~~~~l~~av~~g~ 347 (591)
=+|... +.+++..||+.|+
T Consensus 200 aVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 200 AVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp EEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred eeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 887532 4566677776664
No 38
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=37.53 E-value=24 Score=38.07 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=33.6
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
+..+++|+||++.|.. ..+|.+|.++- ..- +++.+.+.+.+++..|+++. +||.|+.
T Consensus 116 ~~~kdaDIVVitAG~p---rkpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKP---RGPGMERADLL--DINGQIFADQGKALNAVASKNCKVLVV-GNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCC---CCCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHH
Confidence 5689999999987753 23455554321 112 23445555542356655555 6999874
No 39
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.06 E-value=27 Score=36.50 Aligned_cols=56 Identities=32% Similarity=0.485 Sum_probs=34.7
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
.+..+++|+||++.|... .+|.+|.++- ..- .+.++.+.+. ++..++++. .||.|+
T Consensus 63 y~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~-~p~a~vivv-tNPvDv 122 (310)
T cd01337 63 KKALKGADVVVIPAGVPR---KPGMTRDDLF--NINAGIVRDLATAVAKA-CPKALILII-SNPVNS 122 (310)
T ss_pred HHhcCCCCEEEEeCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEc-cCchhh
Confidence 357899999999988542 3455554331 112 2345566666 556666555 689987
No 40
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.60 E-value=29 Score=36.51 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=32.6
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
+..+++|+||++.|... .++.+|.++. ..- .++.+.+.+.+++..|+++. +||+|+.
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~--~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLL--KANVKIFKEQGEALDKYAKKNVKVLVV-GNPANTN 134 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHHH
Confidence 56789999999887532 2344443221 111 23445555553346666655 5899763
No 41
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=36.48 E-value=1.1e+02 Score=29.88 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhC---------------CCCEEEEEeCCCee
Q 007737 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAA---------------KKPVILVLLCGGPV 542 (591)
Q Consensus 478 ~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~---------------~kpvIvV~~~~~P~ 542 (591)
.++.+++...||.+|++.- .-|+++|..=+.+|+.++... +|+++++...|++|
T Consensus 78 sd~l~~ef~aAD~vVi~~P-----------M~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y 146 (202)
T COG1182 78 SDKLLEEFLAADKVVIAAP-----------MYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIY 146 (202)
T ss_pred HHHHHHHHHhcCeEEEEec-----------ccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcC
Confidence 3456677889999988652 236888998889999988651 46677666666666
No 42
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=36.40 E-value=1.3e+02 Score=28.31 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 007737 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (591)
Q Consensus 478 ~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~ 537 (591)
.......+..+|.+|+++... +| +.....+.++.+... +.|+|||++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~~~~-~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKILREL-GIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHHHHT-T-SEEEEEE
T ss_pred eecccceecccccceeeeecc-----cc-------ccccccccccccccc-ccceEEeee
Confidence 445666788999999998632 22 224455667777666 789888887
No 43
>PRK13556 azoreductase; Provisional
Probab=35.31 E-value=1e+02 Score=29.93 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhh---------------CCCCEEEEEeCCCee
Q 007737 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEA---------------AKKPVILVLLCGGPV 542 (591)
Q Consensus 478 ~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~---------------~~kpvIvV~~~~~P~ 542 (591)
.++..+..++||.+|++.=. -++++|+.=+.+|+.+... .+|+++++..+|+++
T Consensus 80 ~~~~~~~l~~AD~iVi~~P~-----------yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~ 148 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFPL-----------WNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVY 148 (208)
T ss_pred HHHHHHHHHHCCEEEEeccc-----------cccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCC
Confidence 44566788999999986411 1456777777788887743 257787777777665
No 44
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.81 E-value=40 Score=28.73 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=10.2
Q ss_pred CchhhhhHHHHHHHHHHHhhcc
Q 007737 1 MIFHKLSLVFPLLCLCFTSLLT 22 (591)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (591)
|-.++++|+.++|+++|..++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 3344445554444444444443
No 45
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=34.40 E-value=1e+02 Score=28.77 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=27.7
Q ss_pred hcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 007737 486 KGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (591)
Q Consensus 486 ~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~ 537 (591)
.+.|++|+++... ++ .....|..++.+. ++|+|+|++
T Consensus 77 ~~~D~ii~VvDa~-----------~l---~r~l~l~~ql~e~-g~P~vvvlN 113 (156)
T PF02421_consen 77 EKPDLIIVVVDAT-----------NL---ERNLYLTLQLLEL-GIPVVVVLN 113 (156)
T ss_dssp TSSSEEEEEEEGG-----------GH---HHHHHHHHHHHHT-TSSEEEEEE
T ss_pred cCCCEEEEECCCC-----------CH---HHHHHHHHHHHHc-CCCEEEEEe
Confidence 5799999987421 11 3456788888888 899999988
No 46
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=34.39 E-value=1e+02 Score=26.92 Aligned_cols=26 Identities=4% Similarity=0.077 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHHhhhc
Q 007737 48 TTLPISQRARDLVSRLTLDEKISQLVN 74 (591)
Q Consensus 48 ~~~~~~~r~~~ll~~mtleEKv~ql~~ 74 (591)
.....++.++++---||-+| |-.+++
T Consensus 35 G~~~~~~~l~~l~~GmTk~q-V~~lLG 60 (113)
T PRK11548 35 GNYLTPNDVAKIHVGMTQQQ-VAYTLG 60 (113)
T ss_pred cccCCHHHHHHhcCCCCHHH-HHHHcC
Confidence 44455777888888899555 555554
No 47
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=33.97 E-value=62 Score=29.33 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhcc
Q 007737 9 VFPLLCLCFTSLLT 22 (591)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (591)
.+.+|.+++++|+.
T Consensus 5 ~~~LL~L~LsGCS~ 18 (133)
T PRK10781 5 PICLLALMLTGCSM 18 (133)
T ss_pred HHHHHHHHHhhccc
Confidence 33444455555554
No 48
>PLN02602 lactate dehydrogenase
Probab=33.38 E-value=29 Score=36.87 Aligned_cols=56 Identities=25% Similarity=0.494 Sum_probs=34.2
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
+..++||+||++.|... .+|.+|.++- ..- .++++.+.+. +.+.++++. .||.|+.
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll--~~N~~I~~~i~~~I~~~-~p~~ivivv-tNPvdv~ 160 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLL--QRNVALFRKIIPELAKY-SPDTILLIV-SNPVDVL 160 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHHH-CCCeEEEEe-cCchHHH
Confidence 35799999999888542 3455664432 112 2345556665 556666655 5898763
No 49
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=33.30 E-value=27 Score=36.19 Aligned_cols=55 Identities=35% Similarity=0.498 Sum_probs=34.5
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
+..++||+||++.|... .+|.+|.++- ..- .++.+++.+. +...++++. +||.|+
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dll--~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLELV--GRNVRIMKSIVPEVVKS-GFDGIFLVA-TNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEe-CCHHHH
Confidence 46899999999887532 3466665431 112 3345566666 566666555 689876
No 50
>PRK13555 azoreductase; Provisional
Probab=32.66 E-value=1.1e+02 Score=29.97 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhh---------------CCCCEEEEEeCCCee
Q 007737 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEA---------------AKKPVILVLLCGGPV 542 (591)
Q Consensus 478 ~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~---------------~~kpvIvV~~~~~P~ 542 (591)
.+...+..+.||.+|++.=. -++++|+.=+.+|+.+... .+|+++|+..+|++|
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~-----------~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~ 148 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPL-----------WNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDY 148 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCc-----------ccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCC
Confidence 45667788999998886411 1355666666677766542 257887777767765
No 51
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.09 E-value=42 Score=34.98 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=33.2
Q ss_pred HHhhcCCEEEEEeecCCCCccccCC--CCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELD--RVDLVLPGRQQ----ELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~D--r~~l~l~~~q~----~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
+..++||+||++.|... ..|.+ |.++ -..-. +++.++.+. +.+.|+++. .||.|+.
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dl--l~~N~~I~~~i~~~i~~~-~p~~i~ivv-sNPvDv~ 125 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDL--AQTNAKIIREIMGNITKV-TKEAVIILI-TNPLDIA 125 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHH--HHHHHHHHHHHHHHHHHh-CCCeEEEEe-cCcHHHH
Confidence 57899999999888532 23444 2322 12222 345566666 556665555 6898873
No 52
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=31.98 E-value=36 Score=35.72 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=33.7
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
+..+++|+||++.|... .++.+|.++- ..- +++.+++.+.+++..|+++. +||+|+.
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~ll--~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDLL--SKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 57889999999887532 2344443321 122 23455666652256666666 5899873
No 53
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=31.40 E-value=1.4e+02 Score=29.70 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=53.3
Q ss_pred HHHHhcCCccEEEeeccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCCcc
Q 007737 251 ESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVN 330 (591)
Q Consensus 251 ~~ai~~g~~~~vM~s~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~ 330 (591)
|++.+.|.. +||.--..|..----.|++.|+ +++++. +=-||-|.+ .+ ++.++ ..+++-|+|=+
T Consensus 145 rrLee~Gca-avMPl~aPIGSg~G~~n~~~l~-iiie~a--~VPviVDAG----------iG-~pSdA-a~aMElG~DaV 208 (262)
T COG2022 145 RRLEEAGCA-AVMPLGAPIGSGLGLQNPYNLE-IIIEEA--DVPVIVDAG----------IG-TPSDA-AQAMELGADAV 208 (262)
T ss_pred HHHHhcCce-EeccccccccCCcCcCCHHHHH-HHHHhC--CCCEEEeCC----------CC-ChhHH-HHHHhccccee
Confidence 455567765 9999766663222334777775 788887 777888885 22 44554 57999999988
Q ss_pred Ccch----------hHHHHHHHHHcCC
Q 007737 331 CGSF----------LQKHTKAAVKQKK 347 (591)
Q Consensus 331 l~~~----------~~~~l~~av~~g~ 347 (591)
|... +.++..-||+.|+
T Consensus 209 L~NTAiA~A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 209 LLNTAIARAKDPVAMARAFALAVEAGR 235 (262)
T ss_pred ehhhHhhccCChHHHHHHHHHHHHHhH
Confidence 7522 3456666666664
No 54
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=30.88 E-value=1.1e+02 Score=27.28 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=13.8
Q ss_pred HHHHHHhhcCCEEEEEee
Q 007737 479 DKAVDIAKGADHVVLMMG 496 (591)
Q Consensus 479 ~~~~~~a~~aD~vIv~~g 496 (591)
.++.+.++++|++++++.
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 356678889998888774
No 55
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=30.43 E-value=1.3e+02 Score=31.07 Aligned_cols=31 Identities=6% Similarity=0.079 Sum_probs=23.0
Q ss_pred HHHHHHHHhchhccCcCCCCCCCCCCceeeeecccccc
Q 007737 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (591)
Q Consensus 183 v~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~ 220 (591)
++.+...||+-++.. + ....|.+|=|.+||.
T Consensus 106 IAT~T~~~V~~~~~~-~------~~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRER-Y------PDGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHhh-C------CCcEEEecCcCCCch
Confidence 677888888888753 1 123599999999994
No 56
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=29.94 E-value=64 Score=33.60 Aligned_cols=57 Identities=25% Similarity=0.431 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
+..++||+||++.|... .++.+|.++-.. .--.+.++++.+. +...++++. +||+|+
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~-~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVV-TNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-CCchHH
Confidence 35899999999988542 344454332100 0112344455555 345555555 589875
No 57
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.82 E-value=1.1e+02 Score=20.09 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 007737 336 QKHTKAAVKQKKLPESEIDRALHNLF 361 (591)
Q Consensus 336 ~~~l~~av~~g~i~~~~i~~av~ril 361 (591)
...+.+...+|.||++...+.-.+||
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35678899999999999999988886
No 58
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=29.39 E-value=38 Score=35.15 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=32.8
Q ss_pred HhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 484 IAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 484 ~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
.++++|++|++.|.. ..+|.+|.++- ..- .++.+++.+. +...++++. +||.|+.
T Consensus 65 ~l~~aDIVIitag~~---~~~g~~R~dll--~~N~~i~~~~~~~i~~~-~~~~~vivv-sNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAP---QKPGETRLDLL--EKNAKIMKSIVPKIKAS-GFDGIFLVA-SNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCC---CCCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEe-cChHHHH
Confidence 468999999998854 23455664431 122 2344555555 455555555 6898763
No 59
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=29.30 E-value=1.8e+02 Score=30.01 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=43.4
Q ss_pred CHHHHHHhhhhccee---cCCCCcccCCcccHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHh
Q 007737 450 TPLQALQNYVENTVY---YPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAE 526 (591)
Q Consensus 450 t~~~~l~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~ 526 (591)
.+.++|+.++++... ..-|.- +..--++..++++++|++||+-|.++ .+..+|.+ +++
T Consensus 175 ~Iv~~l~~r~p~~~~~~~~~ICyA---T~nRQ~Avk~la~~~Dl~iVVG~~nS---------------SNs~rL~e-iA~ 235 (294)
T COG0761 175 EIVAALKERFPKIEVPPFNDICYA---TQNRQDAVKELAPEVDLVIVVGSKNS---------------SNSNRLAE-IAK 235 (294)
T ss_pred HHHHHHHHhCccccCCcccccchh---hhhHHHHHHHHhhcCCEEEEECCCCC---------------ccHHHHHH-HHH
Confidence 456677777763211 111211 11123445578889999998644332 13345555 554
Q ss_pred hCCCCEEEEEeCCCeeeeccccccCCcceE
Q 007737 527 AAKKPVILVLLCGGPVDITFAKYDRNIGSI 556 (591)
Q Consensus 527 ~~~kpvIvV~~~~~P~dl~~~~~~~~v~Ai 556 (591)
..+.|..+| .+|=++.+ .|+..+..|
T Consensus 236 ~~g~~aylI---d~~~ei~~-~w~~~~~~V 261 (294)
T COG0761 236 RHGKPAYLI---DDAEEIDP-EWLKGVKTV 261 (294)
T ss_pred HhCCCeEEe---CChHhCCH-HHhcCccEE
Confidence 447788765 34655542 233455555
No 60
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=28.74 E-value=1.7e+02 Score=32.07 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHhh-cCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeee
Q 007737 483 DIAK-GADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVD 543 (591)
Q Consensus 483 ~~a~-~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~d 543 (591)
+.+. .+|..||++.... . -+-.|.++ -....++|+.+.+. +||+|+|+++..|+.
T Consensus 139 kVI~dhstIgivVtTDgs-i--~dI~Re~y--~~aEe~~i~eLk~~-~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGT-I--TDIPREDY--VEAEERVIEELKEL-NKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHhcCcEEEEEEcCCC-c--cccccccc--hHHHHHHHHHHHhc-CCCEEEEEECcCCCC
Confidence 3444 8998888763210 0 01123332 35678899999998 899999999998883
No 61
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=28.23 E-value=6.4e+02 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=12.3
Q ss_pred HHHHHH-cCCCccCc---chhHHHHHHHHHcC
Q 007737 319 VVDVLK-AGMDVNCG---SFLQKHTKAAVKQK 346 (591)
Q Consensus 319 ~~~al~-AG~D~~l~---~~~~~~l~~av~~g 346 (591)
+++.++ ||++.+-. ....+.+..+++.|
T Consensus 96 a~r~~~~aGa~aVkiEd~~~~~~~I~al~~ag 127 (254)
T cd06557 96 AARLMKEAGADAVKLEGGAEVAETIRALVDAG 127 (254)
T ss_pred HHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcC
Confidence 344444 66654422 22334444444444
No 62
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=27.98 E-value=1.5e+02 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 007737 479 DKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (591)
Q Consensus 479 ~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~ 537 (591)
....+.+..+|++|+++..+. .+.....++++.+. . ++|+|+|++
T Consensus 71 ~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~-~-~~~~i~v~N 115 (116)
T PF01926_consen 71 RKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK-N-KKPIILVLN 115 (116)
T ss_dssp HHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH-T-TSEEEEEEE
T ss_pred HHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh-c-CCCEEEEEc
Confidence 345666688999999885221 11134567777775 4 789998875
No 63
>PTZ00325 malate dehydrogenase; Provisional
Probab=27.38 E-value=49 Score=34.70 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=34.8
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCCh---hHHHHHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG---RQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~---~q~~li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
.+..+++|+||++.|... .++.+|.++ +.. --..+++++.+. +.+-|+++. .||+|..
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~-~~~~iviv~-SNPvdv~ 131 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASS-APKAIVGIV-SNPVNST 131 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCcHHHH
Confidence 457889999999988532 233344333 112 224556677666 555555545 5898764
No 64
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=27.03 E-value=47 Score=34.50 Aligned_cols=54 Identities=28% Similarity=0.438 Sum_probs=31.1
Q ss_pred hhcCCEEEEEeecCCCCccccCCCCCCCCChhHHH----HHHHHHhhCCCCEEEEEeCCCeeeec
Q 007737 485 AKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQE----LITRVAEAAKKPVILVLLCGGPVDIT 545 (591)
Q Consensus 485 a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~----li~~v~~~~~kpvIvV~~~~~P~dl~ 545 (591)
++++|+||+++|... .++.+|.++ -....+ .++++.+. +++.++++. .||.|+.
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~l--~~~N~~iv~~i~~~I~~~-~p~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSREDL--LSMNAGIVREVTGRIMEH-SPNPIIVVV-SNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCcHHHH
Confidence 689999999998642 233344322 122333 34455555 455555555 5898874
No 65
>PLN00106 malate dehydrogenase
Probab=26.81 E-value=52 Score=34.57 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=34.8
Q ss_pred HHHHhhcCCEEEEEeecCCCCccccCCCCCCCCCh---hHHHHHHHHHhhCCCCEEEEEeCCCeee
Q 007737 481 AVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG---RQQELITRVAEAAKKPVILVLLCGGPVD 543 (591)
Q Consensus 481 ~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~---~q~~li~~v~~~~~kpvIvV~~~~~P~d 543 (591)
..+..+++|+||++.|... .+|.+|.++ ++. --.++++++.+. +.+.|+++. .||.|
T Consensus 80 ~~~~l~~aDiVVitAG~~~---~~g~~R~dl-l~~N~~i~~~i~~~i~~~-~p~aivivv-SNPvD 139 (323)
T PLN00106 80 LGDALKGADLVIIPAGVPR---KPGMTRDDL-FNINAGIVKTLCEAVAKH-CPNALVNII-SNPVN 139 (323)
T ss_pred HHHHcCCCCEEEEeCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEEEe-CCCcc
Confidence 3467899999999887532 234455432 111 123455666666 566666655 68998
No 66
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=26.43 E-value=37 Score=35.14 Aligned_cols=14 Identities=29% Similarity=0.308 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHH
Q 007737 5 KLSLVFPLLCLCFT 18 (591)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (591)
|.+|||+|||||-.
T Consensus 8 RVLLVCALCVLWCg 21 (291)
T PTZ00459 8 RVLLVCALCVLWCG 21 (291)
T ss_pred hHHHHHHHHHHhcC
Confidence 88899988888765
No 67
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=26.32 E-value=51 Score=34.43 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=32.8
Q ss_pred HHhhcCCEEEEEeecCCCCccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
+..++||+||++.|.. ..+|.+|.++- ..- .++++.+.+. +...++++. +||.|+
T Consensus 69 ~~~~~adivIitag~~---~k~g~~R~dll--~~N~~i~~~i~~~i~~~-~~~~~vivv-sNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAP---QKPGETRLDLV--EKNLKIFKSIVGEVMAS-GFDGIFLVA-SNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCC---CCCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEc-cCcHHH
Confidence 4579999999988753 23455664431 122 2335555665 445555544 689875
No 68
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.20 E-value=1.4e+02 Score=23.13 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHhcCCHHHHHH
Q 007737 49 TLPISQRARDLVSRLTLDEKIS 70 (591)
Q Consensus 49 ~~~~~~r~~~ll~~mtleEKv~ 70 (591)
.+++|+|.+.|=.++.-.|+-.
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra 48 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRA 48 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3568999988877777666543
No 69
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=26.06 E-value=80 Score=32.47 Aligned_cols=124 Identities=15% Similarity=0.268 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhcceecccCCC--CCCCCCCCCceEEEEccCCcccccccCCCCCCCCCcCCHHHHHHhhhhcce---e
Q 007737 390 PAHQVLALQAAQDGIVLLKNSHG--LLPLPKSKSVSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTV---Y 464 (591)
Q Consensus 390 ~~~~~la~e~a~~SivLLKN~~~--~LPL~~~~~~kv~viGp~a~~~~~~~g~~sg~~~~~~t~~~~l~~~~~~v~---~ 464 (591)
+|-+.+.-.+..+...++++... -||+.. .++++++..-..+.. .+..+.+.|++.+++.. +
T Consensus 123 pEv~gi~g~~~~~~~~vv~~~~~~~~l~~~~--~~kv~vvsQTT~~~~-----------~~~~i~~~l~~~~~~~~~~~~ 189 (281)
T PF02401_consen 123 PEVIGILGYAPEEKAIVVESPEDVEKLPISD--PKKVAVVSQTTQSVE-----------KFEEIVEALKKRFPELEGPVF 189 (281)
T ss_dssp HHHHHHHCCHHTS-EEEESSHHHHHHGGGSS--TTCEEEEE-TTS-HH-----------HHHHHHHHHHHHSTCEE-SCC
T ss_pred ceEEEecccccCCceEEeCChhhhcccCCCC--CCeEEEEEeecccHH-----------HHHHHHHHHHHhCccccCCCC
Confidence 33334433444455666666432 356553 368988853222111 12334566777776543 1
Q ss_pred cCCCCcccCCcccHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 465 YPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 465 ~~g~~~~~~~~~~~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
..-|.-. ..-.+++.++++++|++||+-|.+ +.+-.+|.+-..+. ++|+..| .++=|+
T Consensus 190 nTIC~aT---~~RQ~a~~~La~~vD~miVIGg~~---------------SsNT~kL~eia~~~-~~~t~~I---e~~~el 247 (281)
T PF02401_consen 190 NTICYAT---QNRQEAARELAKEVDAMIVIGGKN---------------SSNTRKLAEIAKEH-GKPTYHI---ETADEL 247 (281)
T ss_dssp -S--CHH---HHHHHHHHHHHCCSSEEEEES-TT----------------HHHHHHHHHHHHC-TTCEEEE---SSGGG-
T ss_pred CCCCHhH---HHHHHHHHHHHhhCCEEEEecCCC---------------CccHHHHHHHHHHh-CCCEEEe---CCcccc
Confidence 2222110 122356677889999888764432 14566676644444 7788765 235454
Q ss_pred --cccc
Q 007737 545 --TFAK 548 (591)
Q Consensus 545 --~~~~ 548 (591)
.|+.
T Consensus 248 ~~~~l~ 253 (281)
T PF02401_consen 248 DPEWLK 253 (281)
T ss_dssp -HHHHT
T ss_pred CHhHhC
Confidence 3554
No 70
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=26.00 E-value=2.3e+02 Score=29.09 Aligned_cols=31 Identities=10% Similarity=-0.069 Sum_probs=23.1
Q ss_pred HHHHHHHHhchhccCcCCCCCCCCCCceeeeecccccc
Q 007737 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (591)
Q Consensus 183 v~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~ 220 (591)
++.+...||+-+++. + ....|.+|-|.+||.
T Consensus 105 IAT~T~~~V~~~~~~-~------~~~~I~~TRKT~Pg~ 135 (277)
T TIGR01334 105 VATYTHKMVTLAKKI-S------PMAVVACTRKAIPLT 135 (277)
T ss_pred HHHHHHHHHHHHHhc-C------CCCEEEecCCCCCCh
Confidence 677888888888764 1 123599999999983
No 71
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.72 E-value=3e+02 Score=27.66 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHh--hcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 479 DKAVDIA--KGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 479 ~~~~~~a--~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
++.++.+ .++|+++|.+|. +.|..++.......+.++ + +..|.-+|.
T Consensus 147 ~~i~~~I~~s~~dil~VglG~-----------------PkQE~~~~~~~~~~~~~v-~-~gvGg~fD~ 195 (243)
T PRK03692 147 QALFERIHASGAKIVTVAMGS-----------------PKQEIFMRDCRLVYPDAL-Y-MGVGGTYDV 195 (243)
T ss_pred HHHHHHHHhcCCCEEEEECCC-----------------cHHHHHHHHHHHhCCCCE-E-EEeCeEEEE
Confidence 3344443 468888887763 468889888776533333 3 334666654
No 72
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.40 E-value=42 Score=35.02 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=33.3
Q ss_pred HhhcCCEEEEEeecCCCCccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCCeeee
Q 007737 484 IAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (591)
Q Consensus 484 ~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~v~~~~~kpvIvV~~~~~P~dl 544 (591)
..++||+||++.|... .+|.+|.++--. +--.++++.+.+. +.+.++++. +||.|+
T Consensus 68 ~~~~adivvitaG~~~---k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~ 125 (312)
T cd05293 68 VTANSKVVIVTAGARQ---NEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVV-SNPVDI 125 (312)
T ss_pred HhCCCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEc-cChHHH
Confidence 4799999999888543 245566433100 1123455666666 455665555 589876
No 73
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=25.37 E-value=1.2e+02 Score=29.66 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEE
Q 007737 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILV 535 (591)
Q Consensus 478 ~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV 535 (591)
.++.++.+.++|+|++ |+.+.... -..-|.++|+++.+. +++++|.
T Consensus 4 ~~~l~~~l~~~~vVll--GE~Hdn~~---------~H~~Ql~ll~~L~~~-~~~~al~ 49 (213)
T PF04187_consen 4 FEQLIKQLANADVVLL--GEQHDNPD---------HHRLQLELLRALYAQ-RPPLALG 49 (213)
T ss_dssp HHHHHHHHTT-SEEEE--EE-TT-HH---------HHHHHHHHHHHHHHT-T--EEEE
T ss_pred HHHHHHHHhCCCEEEE--CCCCCCHH---------HHHHHHHHHHHHHhc-CCCCEEE
Confidence 5677888999998876 76432211 124688899999777 5565554
No 74
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=24.84 E-value=1e+02 Score=20.63 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=22.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHcCC
Q 007737 345 QKKLPESEIDRALHNLFSVRMRLGL 369 (591)
Q Consensus 345 ~g~i~~~~i~~av~ril~~k~~~gl 369 (591)
.|.|+.+++-+++.|+...+.+.|-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999988765
No 75
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.55 E-value=4.4e+02 Score=25.59 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=78.7
Q ss_pred eeeccCCC-CCCCccCCCCCCChHHHHHHHHHHhchhccCcCCCCCCCCCCceeeeeccccccCCCCCCCCccccccccc
Q 007737 159 PNINIFRD-PRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARV 237 (591)
Q Consensus 159 Pv~dv~~~-p~~gr~~rsfgeDp~lv~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~ 237 (591)
||+-+.++ .......-++|.|++..++....++.......+ -+..+.+.|+..
T Consensus 82 pvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~----------~v~~~~~~~~~~---------------- 135 (257)
T PF13407_consen 82 PVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKG----------KVLILSGSPGNP---------------- 135 (257)
T ss_dssp EEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTE----------EEEEEESSTTSH----------------
T ss_pred eEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccCc----------eEEeccCCCCch----------------
Confidence 77777777 233345557888999999888888776665522 333444444421
Q ss_pred CHHHHHhhcCchHHHHHhc-CCccEEEeeccccCCcccccCHHHHHHHHhhhcCcceEEEccchhhHhhhccccccCCHH
Q 007737 238 TMQDLADTYQPPFESCVKQ-GRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPE 316 (591)
Q Consensus 238 ~~~~l~~~~l~pF~~ai~~-g~~~~vM~s~~~v~g~pa~~s~~~l~~lLR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ 316 (591)
... ..+.-|+.++++ +.. -+...+...+.. .......+.++|... ..++++..++...
T Consensus 136 -~~~---~r~~g~~~~l~~~~~~-~~~~~~~~~~~~-~~~a~~~~~~~l~~~-~~~~i~~~~~~~~-------------- 194 (257)
T PF13407_consen 136 -NTQ---ERLEGFRDALKEYPGV-EIVDEYEYTDWD-PEDARQAIENLLQAN-PVDAIIACNDGMA-------------- 194 (257)
T ss_dssp -HHH---HHHHHHHHHHHHCTTE-EEEEEEEECTTS-HHHHHHHHHHHHHHT-TEEEEEESSHHHH--------------
T ss_pred -HHH---HHHHHHHHHHhhccee-eeeeeeeccCCC-HHHHHHHHHHhhhcC-CceEEEeCCChHH--------------
Confidence 011 113467777776 332 333322222222 233445567788766 5889887766422
Q ss_pred HHHHHHHH-cCC--Cc-cCcchhHHHHHHHHHcCCCC
Q 007737 317 DAVVDVLK-AGM--DV-NCGSFLQKHTKAAVKQKKLP 349 (591)
Q Consensus 317 ea~~~al~-AG~--D~-~l~~~~~~~l~~av~~g~i~ 349 (591)
..+.++++ +|. +. +.+........+++++|.++
T Consensus 195 ~g~~~al~~~g~~~~~~v~g~d~~~~~~~~i~~g~~~ 231 (257)
T PF13407_consen 195 LGAAQALQQAGRAGKVIVVGFDGSPEALEAIKDGNIT 231 (257)
T ss_dssp HHHHHHHHHTTCTTTSEEEEEECHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHcCCcccceeecCCCCHHHHHHHHCCCCe
Confidence 12233333 443 22 22233446667888888875
No 76
>COG1159 Era GTPase [General function prediction only]
Probab=23.22 E-value=2.1e+02 Score=29.67 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 007737 479 DKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (591)
Q Consensus 479 ~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~ 537 (591)
..+.+..+++|++++++-.+..+ .......++.+.+. +.|+|++++
T Consensus 77 ~~a~~sl~dvDlilfvvd~~~~~------------~~~d~~il~~lk~~-~~pvil~iN 122 (298)
T COG1159 77 KAARSALKDVDLILFVVDADEGW------------GPGDEFILEQLKKT-KTPVILVVN 122 (298)
T ss_pred HHHHHHhccCcEEEEEEeccccC------------CccHHHHHHHHhhc-CCCeEEEEE
Confidence 45667889999999988532111 12344555666664 679998877
No 77
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=23.05 E-value=2.6e+02 Score=24.53 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 007737 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (591)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~ 537 (591)
......+|++|+++..... + ...+..+++.+... ++|+|+|++
T Consensus 71 ~~~~~~~d~ii~v~d~~~~----------~--~~~~~~~~~~~~~~-~~piiiv~n 113 (157)
T cd01894 71 ELAIEEADVILFVVDGREG----------L--TPADEEIAKYLRKS-KKPVILVVN 113 (157)
T ss_pred HHHHHhCCEEEEEEecccc----------C--CccHHHHHHHHHhc-CCCEEEEEE
Confidence 3456789999888753211 1 12234555655555 689888877
No 78
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=23.01 E-value=1.8e+02 Score=27.19 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=35.2
Q ss_pred ccHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHh--hCCCCEEEEEeCCCe
Q 007737 476 ASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAE--AAKKPVILVLLCGGP 541 (591)
Q Consensus 476 ~~~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~--~~~kpvIvV~~~~~P 541 (591)
+...+..+...+||.+|++.=+ + +.+.|+.=+.+|+.+.. ..+||++++..+|++
T Consensus 57 ~~~~~~~~~i~~AD~iIi~tP~--Y---------~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~~ 113 (174)
T TIGR03566 57 PDAERILQAIESADLLVVGSPV--Y---------RGSYTGLFKHLFDLVDPNALIGKPVLLAATGGSE 113 (174)
T ss_pred HHHHHHHHHHHHCCEEEEECCc--C---------cCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCCc
Confidence 3456777888999999885421 1 23456655667776531 237898888776554
No 79
>PRK00170 azoreductase; Reviewed
Probab=22.89 E-value=1.6e+02 Score=27.93 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=35.0
Q ss_pred cHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHh---------------hCCCCEEEEEeCCCe
Q 007737 477 SIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAE---------------AAKKPVILVLLCGGP 541 (591)
Q Consensus 477 ~~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~---------------~~~kpvIvV~~~~~P 541 (591)
...+..+..++||.+|++.=. -++++|+.-+.+|+.+.. ..+|++++|..+|++
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP~-----------y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~ 144 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAPM-----------YNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGI 144 (201)
T ss_pred HHHHHHHHHHHCCEEEEeecc-----------cccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCC
Confidence 355667888999999986411 134566666677777642 125777777776654
No 80
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=22.61 E-value=1.2e+02 Score=35.15 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=34.2
Q ss_pred HhhhcCcceEEEccchhhHhhhccccccCCHHHHHHHHHHcCCCccCc
Q 007737 285 ARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCG 332 (591)
Q Consensus 285 LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~l~ 332 (591)
|.+=+||+|.|+||.++.+...- .....++++.+.---.-|.|+.|.
T Consensus 74 lH~f~~w~g~ilTDSGgfQv~s~-g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 74 IHSLIGFDGPIMTDSGSFQLSVY-GDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred hHHHhCCCCCeEecCCceeeeec-CccccCHHHHHHHHHHhCCCEEEE
Confidence 56668999999999998664432 123347888777667789999763
No 81
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.94 E-value=1.1e+02 Score=32.07 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.1
Q ss_pred CchhhhhHHHHHHHHHHHhhccccCCCCC
Q 007737 1 MIFHKLSLVFPLLCLCFTSLLTRVDSTQP 29 (591)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (591)
|.+++..++.+++++++++|++.....++
T Consensus 1 ~k~~~~~v~~al~v~~LaaCSs~~~~~~q 29 (342)
T COG3317 1 MKSSAKLVLGALLVLLLAACSSDSEYKRQ 29 (342)
T ss_pred CchHHHHHHHHHHHHHHhhccCCcccccc
Confidence 66788888999999999999875544333
No 82
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=21.82 E-value=1.2e+02 Score=30.27 Aligned_cols=19 Identities=11% Similarity=-0.040 Sum_probs=14.0
Q ss_pred CchhhhhHHHHHHHHHHHhh
Q 007737 1 MIFHKLSLVFPLLCLCFTSL 20 (591)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (591)
|.|||.+++++++++| ++|
T Consensus 1 ~~~~~~~~~~~~~~~l-~gC 19 (234)
T PRK12788 1 MRCMRLLVAILACLAL-AGC 19 (234)
T ss_pred ChHHHHHHHHHHHHHh-hcc
Confidence 7899988888766666 445
No 83
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.19 E-value=4.5e+02 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=20.9
Q ss_pred HHHHHHHHhchhccCcCCCCCCCCCCceeeeecccccc
Q 007737 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (591)
Q Consensus 183 v~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~ 220 (591)
++.++..|++-+.+. . ..|.+|=|.+||.
T Consensus 117 IAT~T~~~v~~~~~~-~--------~~i~~TRKt~Pg~ 145 (288)
T PRK07428 117 IATLTRQYVEKIADL-P--------TQLVDTRKTTPGL 145 (288)
T ss_pred HHHHHHHHHHHhcCC-C--------eEEEecCCCCCcc
Confidence 667777777777433 1 2588999999984
No 84
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=20.60 E-value=79 Score=31.25 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHhchhccCcCCCCCCCCCCceeeeeccccccCCCCCCCCcccccccccCHHHHHhhcCchHHHHHhcCC
Q 007737 179 DPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGR 258 (591)
Q Consensus 179 Dp~lv~~~a~a~v~G~q~~~g~~~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~~~~l~pF~~ai~~g~ 258 (591)
+|.-+.++-.+.+.+.+...=.--+.+.++.++..--=|-| + .+. +.+-+++ -|+.+++...
T Consensus 105 sp~~~~~~l~~~l~~~~~E~f~vL~Ld~qnrlI~~e~lf~G----T------i~~-s~V~PRE-------I~k~Al~~nA 166 (224)
T COG2003 105 SPEAVAEYLRAELGGEEREHFVVLYLDSQNRLIATETLFIG----T------LNV-SEVHPRE-------IFKEALKYNA 166 (224)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHhcCcCceecceeEEee----e------ccc-ceecHHH-------HHHHHHHhcc
Confidence 78889999888888876651000000111223333222322 0 110 1122333 3778898875
Q ss_pred ccEEEeeccccCCccc-ccCHHHHHHHHhhhcCcceEEEccch
Q 007737 259 ASGIMCAYNRVNGIPS-CADRNLLSKTARRQWGFHGYITSDCD 300 (591)
Q Consensus 259 ~~~vM~s~~~v~g~pa-~~s~~~l~~lLR~~~gf~G~visD~~ 300 (591)
. +||++||.-.|.|. +.....+|.-|.+-+.+-|+.+-|-.
T Consensus 167 a-avIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHi 208 (224)
T COG2003 167 A-AVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHI 208 (224)
T ss_pred h-hhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeE
Confidence 4 99999999977543 33455688889999999998888875
No 85
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=20.56 E-value=39 Score=28.89 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHHHhhccccCC
Q 007737 4 HKLSLVFPLLCLCFTSLLTRVDS 26 (591)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (591)
||..++.+++++++++|..++..
T Consensus 1 mKk~ll~~~lallLtgCatqt~~ 23 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQTFT 23 (97)
T ss_pred CcHHHHHHHHHHHHcccceeEEE
Confidence 45556566667788888876644
No 86
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.56 E-value=2.7e+02 Score=28.92 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCCeeeeccccccCCcceEE
Q 007737 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSIL 557 (591)
Q Consensus 478 ~~~~~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~v~~~~~kpvIvV~~~~~P~dl~~~~~~~~v~Ail 557 (591)
.+++.+.++++|+.||+-|.++ .+-.+|.+-..+. ++|+..|-. ..=++..|+. +.+.|=
T Consensus 201 Q~a~~~La~~vD~miVVGg~~S---------------sNT~kL~~i~~~~-~~~t~~Ie~-~~el~~~~l~---~~~~VG 260 (298)
T PRK01045 201 QEAVKELAPQADLVIVVGSKNS---------------SNSNRLREVAEEA-GAPAYLIDD-ASEIDPEWFK---GVKTVG 260 (298)
T ss_pred HHHHHHHHhhCCEEEEECCCCC---------------ccHHHHHHHHHHH-CCCEEEECC-hHHCcHHHhc---CCCEEE
Confidence 3456778899999888655331 2345666544444 678766422 2223334654 344442
Q ss_pred -EccCCCh-hHHHHHHHHHhcC
Q 007737 558 -WAGYPGE-AGAVALAEVIFGD 577 (591)
Q Consensus 558 -~~~~~g~-~~g~AladvL~G~ 577 (591)
.++-+.+ .--+-+.+.|.+-
T Consensus 261 itaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 261 VTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred EEecCCCCHHHHHHHHHHHHHh
Confidence 2333332 2335555555543
No 87
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=20.51 E-value=3.2e+02 Score=26.13 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=10.6
Q ss_pred HHHHHhhcCCEEEEEee
Q 007737 480 KAVDIAKGADHVVLMMG 496 (591)
Q Consensus 480 ~~~~~a~~aD~vIv~~g 496 (591)
.....+..+|.+|+++.
T Consensus 81 ~~~~~~~~~D~~ilVvd 97 (195)
T cd01884 81 NMITGAAQMDGAILVVS 97 (195)
T ss_pred HHHHHhhhCCEEEEEEE
Confidence 34445567777777764
No 88
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=20.41 E-value=82 Score=33.76 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHcCCCccCcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 007737 313 KSPEDAVVDVLKAGMDVNCGSFLQKHTKAAVKQKKLPESEIDRALHNLFSVRMR 366 (591)
Q Consensus 313 ~~~~ea~~~al~AG~D~~l~~~~~~~l~~av~~g~i~~~~i~~av~ril~~k~~ 366 (591)
.++++.+.---.-|.|+.|.- .+ +-.-..+.+++.+|+.|-++.-.+
T Consensus 140 ltPe~~i~~Q~~iGsDI~m~L------De-~~~~~~~~~~~~~sv~rT~rW~~r 186 (372)
T PRK01008 140 LSPEISVQAQKDLGADIIIPL------DE-LLPFHADPTYFLQSCQRTYVWEKR 186 (372)
T ss_pred eCHHHHHHHHHHHCCCEEEEc------cc-cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 366666666667788887631 00 111124567777777777665544
Done!