Query 007739
Match_columns 591
No_of_seqs 380 out of 2747
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.2E-45 7.6E-50 380.3 12.5 254 262-549 17-289 (303)
2 1okc_A ADP, ATP carrier protei 100.0 3.7E-44 1.3E-48 369.6 15.1 253 262-546 23-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 5.9E-41 2E-45 345.7 18.8 217 369-589 5-240 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.1E-40 3.7E-45 345.1 18.0 214 374-590 4-234 (303)
5 3tgu_G UQCRQ, mitochondrial ub 9.1 3E+02 0.01 22.2 3.9 37 513-549 33-69 (81)
6 1pp9_G Ubiquinol-cytochrome C 7.0 4.2E+02 0.015 21.3 3.9 39 512-550 32-70 (81)
7 3k7b_A Protein A33; C-type lec 6.7 1.8E+02 0.0061 24.4 1.5 31 92-124 62-93 (96)
8 2a3d_A Protein (de novo three- 5.8 2.6E+02 0.0089 21.1 1.8 38 391-428 10-47 (73)
9 1knv_A BSE634I restriction end 5.5 3.2E+02 0.011 27.3 2.7 68 146-217 159-246 (293)
10 1b5e_A Protein (deoxycytidylat 5.3 4.6E+02 0.016 25.5 3.8 14 158-172 57-70 (246)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-45 Score=380.26 Aligned_cols=254 Identities=21% Similarity=0.280 Sum_probs=227.6
Q ss_pred CCCCChhhhhhhhcccc------------cCCChhHHHHHHHhhhcccccccccccccccchhccccccccchhhHHHHH
Q 007739 262 KGQSSCFNAKLMMSTRT------------TKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINSVASSNGTCEKCRH 329 (591)
Q Consensus 262 ~~~~PLD~vKtRmQ~~~------------~~~~~~~~~l~tl~~ig~~~GLyRGl~~~L~~~~~~~~~si~F~~Ye~~k~ 329 (591)
.+.+|||+||||||++. .+++..+++..+++++| ++|||||+.+++++..+.+++ +|++||.+|+
T Consensus 17 ~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG-~~glyrG~~~~l~~~~~~~~i--~f~~ye~~k~ 93 (303)
T 2lck_A 17 LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG-PRSLYNGLVAGLQRQMSFASV--RIGLYDSVKQ 93 (303)
T ss_dssp HTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHC-HHHHHSSHHHHHHHHHHHHHH--TTTHHHHHHH
T ss_pred HHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhC-HHHHHcCCHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 45699999999999973 46788999999999999 999999999999999998888 9999999998
Q ss_pred HhhhhhhhhhhhccCCccchhcchhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHchHHHHHHHHhcCCC-----
Q 007739 330 LMDDDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT----- 404 (591)
Q Consensus 330 ~l~~~~l~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lAG~~Ag~~s~~v~~Ple~IKtRlQ~~~~----- 404 (591)
.+... .. ..+....+++|++||+++.++++|+|+||+|+|++..
T Consensus 94 ~~~~~---------------------------~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~ 142 (303)
T 2lck_A 94 FYTKG---------------------------SE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR 142 (303)
T ss_dssp HHSCC---------------------------CS----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSS
T ss_pred HHhcC---------------------------Cc----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCC
Confidence 54221 00 1245678999999999999999999999999999753
Q ss_pred CCCCHHHHHHHHHHhcCcccccccchhhhhhccccccchhhhhhhhccccCCCCCcccchhhhhhhhhhhhhhhhhhccc
Q 007739 405 EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTP 484 (591)
Q Consensus 405 ~~~s~~~~ir~I~r~eGi~gLYrGl~~tllr~~p~s~i~f~~Ye~lk~~l~~~~~~~~~~~~~~laG~~Ag~vas~vt~P 484 (591)
.|+++++++++|+++||++|||||+.+++++.+|.++++|.+||.+|+.+.............+++|++||++++++++|
T Consensus 143 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P 222 (303)
T 2lck_A 143 RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASP 222 (303)
T ss_dssp SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCH
Confidence 68999999999999999999999999999999999999999999999988765444455667899999999999999999
Q ss_pred hhhhhHHhhcCC--CCCChHHHHHHHHHhhchhhccccHHHHHHHHHhhHhHHHHHHHHHHHHHccC
Q 007739 485 SERIKQQMQVGS--RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPS 549 (591)
Q Consensus 485 lDvIKtR~Q~~~--~y~~~~~~l~~I~r~eGi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l~~~ 549 (591)
+|+||+|||++. .|.++++++++|+++||++|||||+.|+++|.+|..+++|.+||.+|+++.+.
T Consensus 223 ~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 223 VDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 999999999975 59999999999999999999999999999999999999999999999887643
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.7e-44 Score=369.62 Aligned_cols=253 Identities=15% Similarity=0.197 Sum_probs=216.1
Q ss_pred CCCCChhhhhhhhcccc---------cCCChhHHHHHHHhhhcccccccccccccccchhccccccccchhhHHHHHHhh
Q 007739 262 KGQSSCFNAKLMMSTRT---------TKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINSVASSNGTCEKCRHLMD 332 (591)
Q Consensus 262 ~~~~PLD~vKtRmQ~~~---------~~~~~~~~~l~tl~~ig~~~GLyRGl~~~L~~~~~~~~~si~F~~Ye~~k~~l~ 332 (591)
.+.+|||+||||||++. .|++..+++..+++++| ++|||||+.+++++..+.+++ +|++||.+|+.+.
T Consensus 23 ~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG-~~glyrG~~~~l~~~~~~~~~--~f~~ye~~k~~~~ 99 (297)
T 1okc_A 23 TAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG-FLSFWRGNLANVIRYFPTQAL--NFAFKDKYKQIFL 99 (297)
T ss_dssp HHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHC-GGGGGTTTHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccc-hhheecccHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 34589999999999873 46888999999999999 999999999999999998887 9999999998431
Q ss_pred hhhhhhhhhccCCccchhcchhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHchHHHHHHHHhcCC------CCC
Q 007739 333 DDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCH------TEQ 406 (591)
Q Consensus 333 ~~~l~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lAG~~Ag~~s~~v~~Ple~IKtRlQ~~~------~~~ 406 (591)
.. . .............+++|++||+++.++++|+|+||+|+|++. ..|
T Consensus 100 ~~-----~---------------------~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~ 153 (297)
T 1okc_A 100 GG-----V---------------------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF 153 (297)
T ss_dssp TT-----C---------------------CTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSC
T ss_pred cc-----c---------------------CcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCC
Confidence 11 0 000111124567899999999999999999999999999974 257
Q ss_pred CCHHHHHHHHHHhcCcccccccchhhhhhccccccchhhhhhhhccccCCCCCcccchhhhhhhhhhhhhhhhhhccchh
Q 007739 407 KSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSE 486 (591)
Q Consensus 407 ~s~~~~ir~I~r~eGi~gLYrGl~~tllr~~p~s~i~f~~Ye~lk~~l~~~~~~~~~~~~~~laG~~Ag~vas~vt~PlD 486 (591)
+++++++++|+++||++|||||+.+++++.+|.++++|.+||.+|+.+.+. ...+....+++|++||++++++++|+|
T Consensus 154 ~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp SSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHH
Confidence 899999999999999999999999999999999999999999999977532 234456778999999999999999999
Q ss_pred hhhHHhhcCC-------CCCChHHHHHHHHHhhchhhccccHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 007739 487 RIKQQMQVGS-------RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMM 546 (591)
Q Consensus 487 vIKtR~Q~~~-------~y~~~~~~l~~I~r~eGi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l 546 (591)
|||+|||++. .|.++++++++|+++||++|||||+.|+++|. +..+++|.+||.+|+++
T Consensus 232 vvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 232 TVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999864 58999999999999999999999999999996 57899999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.9e-41 Score=345.67 Aligned_cols=217 Identities=21% Similarity=0.313 Sum_probs=194.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHchHHHHHHHHhcCCC--------CCCCHHHHHHHHHHhcCcccccccchhhhhhccccc
Q 007739 369 LAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT--------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPIS 440 (591)
Q Consensus 369 ~~~~~~~lAG~~Ag~~s~~v~~Ple~IKtRlQ~~~~--------~~~s~~~~ir~I~r~eGi~gLYrGl~~tllr~~p~s 440 (591)
++.+..++||++||+++.++++|+|+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.+|.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456789999999999999999999999999999742 578999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccCCC-CCcc---cchhhhhhhhhhhhhhhhhhccchhhhhHHhhcCC-------CCCChHHHHHHHH
Q 007739 441 AVYAFTYESVKGALLPH-LPKE---FHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS-------RYHNCWNALVGII 509 (591)
Q Consensus 441 ~i~f~~Ye~lk~~l~~~-~~~~---~~~~~~~laG~~Ag~vas~vt~PlDvIKtR~Q~~~-------~y~~~~~~l~~I~ 509 (591)
+++|.+||.+|+.+... .... ......+++|++||++++++++|+|+||+|||++. .|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999854322 2111 12356789999999999999999999999999863 5889999999999
Q ss_pred HhhchhhccccHHHHHHHHHhhHhHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhhc
Q 007739 510 KNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPFDVVKTRLQTQ 589 (591)
Q Consensus 510 r~eGi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l~~~~~~~~~~~~~~~~~ag~lAg~vas~lT~PlDvVKTRmQ~q 589 (591)
++||++|||||+.++++|.+|..+++|.+||.+|+++.+. ...+....+++|++||++++++++|+||||||||+|
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999987653 234577889999999999999999999999999987
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=345.11 Aligned_cols=214 Identities=21% Similarity=0.273 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHhcCCC-----------CCCCHHHHHHHHHHhcCcccccccchhhhhhccccccc
Q 007739 374 HAFAGALAGVFVSLCLHPVDTVKTVIQSCHT-----------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAV 442 (591)
Q Consensus 374 ~~lAG~~Ag~~s~~v~~Ple~IKtRlQ~~~~-----------~~~s~~~~ir~I~r~eGi~gLYrGl~~tllr~~p~s~i 442 (591)
+++||++||+++.++++|||+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.+|+.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999753 57899999999999999999999999999999999999
Q ss_pred hhhhhhhhccccCCCCCcccchhhhhhhhhhhhhhhhhhccchhhhhHHhhcCC------CCCChHHHHHHHHHhhchhh
Q 007739 443 YAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS------RYHNCWNALVGIIKNGGLHS 516 (591)
Q Consensus 443 ~f~~Ye~lk~~l~~~~~~~~~~~~~~laG~~Ag~vas~vt~PlDvIKtR~Q~~~------~y~~~~~~l~~I~r~eGi~G 516 (591)
+|.+||.+|+.+.+... ..+....+++|++||++++++++|+|+||+|+|++. .|.++++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 99999999998865422 355677899999999999999999999999999975 58999999999999999999
Q ss_pred ccccHHHHHHHHHhhHhHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhhcc
Q 007739 517 LYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPFDVVKTRLQTQV 590 (591)
Q Consensus 517 LYrGl~p~llr~~p~~ai~f~~YE~lk~~l~~~~~~~~~~~~~~~~~ag~lAg~vas~lT~PlDvVKTRmQ~q~ 590 (591)
||||+.++++|.+|..+++|.+||.+|+.+.+.. ...++....+++|++||++++++++|+||||||||++.
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 9999999999999999999999999999987642 23456778899999999999999999999999999873
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=9.07 E-value=3e+02 Score=22.19 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=29.0
Q ss_pred chhhccccHHHHHHHHHhhHhHHHHHHHHHHHHHccC
Q 007739 513 GLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPS 549 (591)
Q Consensus 513 Gi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l~~~ 549 (591)
|+...+|-+...+++.+|..++.+.+|++.++.....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455567788899999999999999999887654
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=7.04 E-value=4.2e+02 Score=21.28 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=30.6
Q ss_pred hchhhccccHHHHHHHHHhhHhHHHHHHHHHHHHHccCC
Q 007739 512 GGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSL 550 (591)
Q Consensus 512 eGi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l~~~~ 550 (591)
.|+...+|-+.-.++..+|..++.+.+|++.++......
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 355555666777888899999999999999998876553
No 7
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV, EV, VIR protein; 2.10A {Vaccinia virus WR}
Probab=6.72 E-value=1.8e+02 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=14.1
Q ss_pred CcchhhhhhhcccccccCcccccCCC-Cceeeec
Q 007739 92 SHSECKKEVLRNLDKEENAWVPLSTD-SKYFCVD 124 (591)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 124 (591)
+.|.-++.|+...++-+..-| |.- .|||||.
T Consensus 62 TWg~~~~~~~~~~~~~~~~~~--~~e~rkyFCV~ 93 (96)
T 3k7b_A 62 TWGSDGNPITKTTSDYQDSDV--SQEVRKYFCVK 93 (96)
T ss_dssp SBCTTSSBBCSSCCC---CCC--TTCCEEEEEEE
T ss_pred cccccCCccccCCCCeeeccc--chhhheeEEEE
Confidence 334445555554432222111 333 5799995
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=5.82 E-value=2.6e+02 Score=21.09 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=21.1
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCccccccc
Q 007739 391 PVDTVKTVIQSCHTEQKSIVYIGRSIVSERGLTGLYRG 428 (591)
Q Consensus 391 Ple~IKtRlQ~~~~~~~s~~~~ir~I~r~eGi~gLYrG 428 (591)
-+..||||+|.-...-..+...-++|..-|.-..-|+|
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykg 47 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKG 47 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45569999999655444454444555443332333444
No 9
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A {Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB: 3v1z_A* 3v20_A* 3v21_A*
Probab=5.46 E-value=3.2e+02 Score=27.27 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=42.6
Q ss_pred cceeeeccCCcchhh---HHHHHHHhcCCCCCccccccCcccCcccccccchhhhccc----------------ccCCCC
Q 007739 146 QKMSVFDSCSKKFAH---STFWTFLRSGASLSNDTCVWGLASAGIPYQLGNVHRWMTE----------------KFPAGF 206 (591)
Q Consensus 146 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 206 (591)
+++.-+|+++...+. ++|++| .+-.+..+=.| .-+.+.|.|.++.|.|+-| ++..+.
T Consensus 159 ~~~~~I~~~t~~n~d~~~~lyk~f-~gk~~~~~i~~---~isvKtS~RpDRryQ~lhEgn~~K~L~~~lq~r~w~~~~~~ 234 (293)
T 1knv_A 159 EYNLPINKLTHENIDVALTLFKDI-EGKCKWDSLVA---GVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEF 234 (293)
T ss_dssp GGGSCCCSCCHHHHHHHHTHHHHH-TTCBCGGGEEE---EEEEESCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred hhcccCccccccchHHHHHHHHHH-hhhcchhheEE---EEEEecccCccccccchhhHHHHHHHHHHhhhceeecccce
Confidence 677788888887777 999997 33333222222 2345667888877776533 333777
Q ss_pred cccCCCC-chhh
Q 007739 207 TYADSIP-DSEK 217 (591)
Q Consensus 207 ~~~~~~~-~~~~ 217 (591)
+|...+. .++.
T Consensus 235 kyy~~~~~~~~~ 246 (293)
T 1knv_A 235 KYYGASSEPVSK 246 (293)
T ss_dssp EEEEEESSCCCH
T ss_pred eEEEEecCCCCC
Confidence 8877666 4444
No 10
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=5.27 E-value=4.6e+02 Score=25.46 Aligned_cols=14 Identities=7% Similarity=0.238 Sum_probs=11.5
Q ss_pred hhhHHHHHHHhcCCC
Q 007739 158 FAHSTFWTFLRSGAS 172 (591)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (591)
.+++|+| ||+++++
T Consensus 57 ~i~EllW-fl~G~tn 70 (246)
T 1b5e_A 57 IQRELEW-YKSKSLF 70 (246)
T ss_dssp HHHHHHH-HHHTCSB
T ss_pred HHHHHHH-HhhCCCc
Confidence 6889999 8888763
Done!