Query 007739
Match_columns 591
No_of_seqs 380 out of 2747
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 09:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 7.3E-40 5.3E-44 332.2 13.4 249 262-542 22-292 (292)
2 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 1.3E-36 9.7E-41 308.0 18.8 219 368-590 3-240 (292)
3 d1ug8a_ d.68.7.1 (A:) Poly(A)- 15.7 32 0.0023 26.5 1.9 27 140-167 22-49 (87)
4 d2v89a1 g.50.1.2 (A:1414-1487) 12.5 23 0.0017 25.8 0.3 10 116-125 59-68 (74)
5 d1ppjg_ f.23.13.1 (G:) Ubiquin 9.8 99 0.0072 22.9 3.1 37 513-549 33-69 (75)
6 d2b0ja1 a.100.1.11 (A:243-344) 7.6 3E+02 0.022 21.2 5.2 64 373-443 16-81 (102)
7 d1zavu1 a.108.1.1 (U:1-30) Rib 5.8 1.3E+02 0.0094 17.9 1.6 11 63-73 3-13 (30)
8 d1b5ea_ d.117.1.1 (A:) dCMP hy 5.5 1.3E+02 0.0092 27.1 2.2 44 141-198 49-99 (241)
9 d3cx5h1 f.23.13.1 (H:2-94) Ubi 4.9 2.1E+02 0.015 21.9 2.8 35 512-546 42-76 (93)
10 d3bz6a1 a.4.5.75 (A:13-96) Hyp 4.8 1.7E+02 0.012 22.0 2.0 42 34-75 25-66 (84)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=100.00 E-value=7.3e-40 Score=332.21 Aligned_cols=249 Identities=15% Similarity=0.196 Sum_probs=215.6
Q ss_pred CCCCChhhhhhhhcccc---------cCCChhHHHHHHHhhhcccccccccccccccchhccccccccchhhHHHHHHhh
Q 007739 262 KGQSSCFNAKLMMSTRT---------TKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINSVASSNGTCEKCRHLMD 332 (591)
Q Consensus 262 ~~~~PLD~vKtRmQ~~~---------~~~~~~~~~l~tl~~ig~~~GLyRGl~~~L~~~~~~~~~si~F~~Ye~~k~~l~ 332 (591)
.+.+|||+||||+|++. .+++..+++...++++| .++||||+.+.++...+...+ +|+.|+.+++.+.
T Consensus 22 ~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G-~~~ly~G~~~~l~~~~~~~~~--~~~~~~~~~~~~~ 98 (292)
T d1okca_ 22 TAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG-FLSFWRGNLANVIRYFPTQAL--NFAFKDKYKQIFL 98 (292)
T ss_dssp HHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHC-GGGGGTTTHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhh-hhhhhhccchhhhhhhcccch--hHHHHHHHHHHHh
Confidence 44599999999999872 36778888999999988 899999999999999987777 9999999998664
Q ss_pred hhhhhhhhhccCCccchhcchhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHchHHHHHHHHhcCCC------CC
Q 007739 333 DDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT------EQ 406 (591)
Q Consensus 333 ~~~l~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lAG~~Ag~~s~~v~~Ple~IKtRlQ~~~~------~~ 406 (591)
... .............+++|++||+++.++++|+|++|+|+|++.. .+
T Consensus 99 ~~~--------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~ 152 (292)
T d1okca_ 99 GGV--------------------------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF 152 (292)
T ss_dssp TTC--------------------------CTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSC
T ss_pred ccc--------------------------ccccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeecccccccccccc
Confidence 440 0111223345678899999999999999999999999999743 46
Q ss_pred CCHHHHHHHHHHhcCcccccccchhhhhhccccccchhhhhhhhccccCCCCCcccchhhhhhhhhhhhhhhhhhccchh
Q 007739 407 KSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSE 486 (591)
Q Consensus 407 ~s~~~~ir~I~r~eGi~gLYrGl~~tllr~~p~s~i~f~~Ye~lk~~l~~~~~~~~~~~~~~laG~~Ag~vas~vt~PlD 486 (591)
.++.+++++++++||+++||+|+.+++++.+++++++|.+||.+|+.+... ........+++|++++++++++++|+|
T Consensus 153 ~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~~~~~~~~a~~~t~P~d 230 (292)
T d1okca_ 153 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFD 230 (292)
T ss_dssp SSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccc--cccchHHHHHHHHHHHHHHhhccccHH
Confidence 789999999999999999999999999999999999999999999877543 334567788999999999999999999
Q ss_pred hhhHHhhcCC-------CCCChHHHHHHHHHhhchhhccccHHHHHHHHHhhHhHHHHHHHHH
Q 007739 487 RIKQQMQVGS-------RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESL 542 (591)
Q Consensus 487 vIKtR~Q~~~-------~y~~~~~~l~~I~r~eGi~GLYrGl~p~llr~~p~~ai~f~~YE~l 542 (591)
|||+|||.+. .|.++++++++|+++||++|||||+.|+++|.++ +++.|.+||.+
T Consensus 231 vvktR~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~i~-~~i~~~~ye~l 292 (292)
T d1okca_ 231 TVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEI 292 (292)
T ss_dssp HHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHH-HHHHHHHHHTC
T ss_pred HHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhcCcCcccccHHHHHHHHHH-HHhhhhHhhcC
Confidence 9999999864 5889999999999999999999999999999765 68899999963
No 2
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=100.00 E-value=1.3e-36 Score=308.05 Aligned_cols=219 Identities=21% Similarity=0.320 Sum_probs=197.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHchHHHHHHHHhcCC--------CCCCCHHHHHHHHHHhcCcccccccchhhhhhcccc
Q 007739 368 SLAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCH--------TEQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPI 439 (591)
Q Consensus 368 ~~~~~~~~lAG~~Ag~~s~~v~~Ple~IKtRlQ~~~--------~~~~s~~~~ir~I~r~eGi~gLYrGl~~tllr~~p~ 439 (591)
.++..+.++||++||+++.+++||||+||+|+|++. ..++++++++++|+++||+++||+|+.+.+++.++.
T Consensus 3 ~~~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~ 82 (292)
T d1okca_ 3 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 82 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcc
Confidence 357889999999999999999999999999999964 247899999999999999999999999999999999
Q ss_pred ccchhhhhhhhccccCCCCCccc----chhhhhhhhhhhhhhhhhhccchhhhhHHhhcCC-------CCCChHHHHHHH
Q 007739 440 SAVYAFTYESVKGALLPHLPKEF----HSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS-------RYHNCWNALVGI 508 (591)
Q Consensus 440 s~i~f~~Ye~lk~~l~~~~~~~~----~~~~~~laG~~Ag~vas~vt~PlDvIKtR~Q~~~-------~y~~~~~~l~~I 508 (591)
.+++|.+|+.+++.+........ .....+++|++||+++.++++|+|++|+|+|.+. .|.++.++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~ 162 (292)
T d1okca_ 83 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 162 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccccccccccHHHHHHHh
Confidence 99999999999988876543322 2346688999999999999999999999999863 578899999999
Q ss_pred HHhhchhhccccHHHHHHHHHhhHhHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhh
Q 007739 509 IKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPFDVVKTRLQT 588 (591)
Q Consensus 509 ~r~eGi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l~~~~~~~~~~~~~~~~~ag~lAg~vas~lT~PlDvVKTRmQ~ 588 (591)
+++||+++||+|+.++++|.+|..+++|..||.+|+.+.+. ........++++++++++++++|||+||||||||+
T Consensus 163 ~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~ 238 (292)
T d1okca_ 163 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 238 (292)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccchhhhhccccccccceehHhhhhhhhccchhhhcccc----cccchHHHHHHHHHHHHHHhhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654 44567888999999999999999999999999998
Q ss_pred cc
Q 007739 589 QV 590 (591)
Q Consensus 589 q~ 590 (591)
|.
T Consensus 239 ~~ 240 (292)
T d1okca_ 239 QS 240 (292)
T ss_dssp TT
T ss_pred cC
Confidence 74
No 3
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.70 E-value=32 Score=26.49 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=20.6
Q ss_pred ccccccc-ceeeeccCCcchhhHHHHHHH
Q 007739 140 EFLKVTQ-KMSVFDSCSKKFAHSTFWTFL 167 (591)
Q Consensus 140 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (591)
+||+-.+ |-+.+||||+ |.|-|.-+-|
T Consensus 22 ~fL~see~k~l~lepCng-FqRKLIYQtl 49 (87)
T d1ug8a_ 22 DFLQSEEKRSLELDPCTG-FQRKLIYQTL 49 (87)
T ss_dssp HHHHCSSCCEEECCCCCS-HHHHHHHHHH
T ss_pred HHHcCcccceeecCCCcH-HHHHHHHHHH
Confidence 6888877 7899999999 5556665543
No 4
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.46 E-value=23 Score=25.78 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=8.3
Q ss_pred CCCceeeecc
Q 007739 116 TDSKYFCVDV 125 (591)
Q Consensus 116 ~~~~~~~~~~ 125 (591)
.|+||||.|-
T Consensus 59 ~N~KYFC~dH 68 (74)
T d2v89a1 59 GSNKYYCNEH 68 (74)
T ss_dssp SCCCCCCTTT
T ss_pred cCceEEEhhh
Confidence 6899999864
No 5
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.77 E-value=99 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=28.7
Q ss_pred chhhccccHHHHHHHHHhhHhHHHHHHHHHHHHHccC
Q 007739 513 GLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPS 549 (591)
Q Consensus 513 Gi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l~~~ 549 (591)
|+...+|-+.-.+++.+|..++.+.+|++..+.....
T Consensus 33 gi~N~~RR~~~~~l~v~PPfi~~Y~iy~W~~~~~~~~ 69 (75)
T d1ppjg_ 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHhHHhceEEcCHHHHHHHHHHHHHHHHHHH
Confidence 4445555667788899999999999999998866543
No 6
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=7.59 E-value=3e+02 Score=21.21 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=44.6
Q ss_pred HHHHHHHHHH--HHHHHHHchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCcccccccchhhhhhccccccch
Q 007739 373 EHAFAGALAG--VFVSLCLHPVDTVKTVIQSCHTEQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVY 443 (591)
Q Consensus 373 ~~~lAG~~Ag--~~s~~v~~Ple~IKtRlQ~~~~~~~s~~~~ir~I~r~eGi~gLYrGl~~tllr~~p~s~i~ 443 (591)
...++|.+.- +...++-.|-|.+....- -.++.+..+++++|+.|+-+-+.|-++-....+.-+
T Consensus 16 Av~~agiL~Y~~~~t~IlgAP~~mie~qa~-------etL~tma~L~e~~Gi~~m~kaldp~aL~~sa~sM~~ 81 (102)
T d2b0ja1 16 ATVYAGLLAYRDAVTKILGAPADFAQMMAD-------EALTQIHNLMKEKGIANMEEALDPAALLGTADSMCF 81 (102)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHH-------HHHHHHHHHHHHHCGGGHHHHSCGGGGGGTGGGGCS
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHhcCHHHHHhHHHhccc
Confidence 3456666655 555677889988754432 356778889999999999998888776555444433
No 7
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.76 E-value=1.3e+02 Score=17.87 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 007739 63 TAQLIAAVGQL 73 (591)
Q Consensus 63 ~~~~~~~~~~~ 73 (591)
-+|+++|++++
T Consensus 3 ~eeiv~aiekl 13 (30)
T d1zavu1 3 IDEIIEAIEKL 13 (30)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 45667777664
No 8
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]}
Probab=5.51 E-value=1.3e+02 Score=27.08 Aligned_cols=44 Identities=7% Similarity=0.166 Sum_probs=26.9
Q ss_pred ccccccceeeeccCCcchhhHHHHHHHhcCCCCC------cccc-ccCcccCcccccccchhhhc
Q 007739 141 FLKVTQKMSVFDSCSKKFAHSTFWTFLRSGASLS------NDTC-VWGLASAGIPYQLGNVHRWM 198 (591)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (591)
|+.+|.|- -+++|.| ||+++++.. ..-| ++.-.. -++|.+|+|-
T Consensus 49 fp~~ttk~---------i~~EllW-fl~Gstni~~L~~~~~~iWd~~a~~~----G~lg~~YG~r 99 (241)
T d1b5ea_ 49 FGALNDEY---------IQRELEW-YKSKSLFVKDIPGETPKIWQQVASSK----GEINSNYGWA 99 (241)
T ss_dssp SSCCCHHH---------HHHHHHH-HHHTCSBGGGSSSSCCHHHHHHSCTT----SBCSCCHHHH
T ss_pred CCcCchhH---------HHHHHHH-HHhCCCchhhhhhcchhHHHHHhccc----Ccccceeeee
Confidence 67777763 4688999 998886432 1224 443222 2567888874
No 9
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.86 E-value=2.1e+02 Score=21.88 Aligned_cols=35 Identities=3% Similarity=0.088 Sum_probs=29.1
Q ss_pred hchhhccccHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 007739 512 GGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMM 546 (591)
Q Consensus 512 eGi~GLYrGl~p~llr~~p~~ai~f~~YE~lk~~l 546 (591)
.|+...||-+...+++.+|..++.+.+|++.++.-
T Consensus 42 ~~ifN~~RR~r~q~lyv~PPfi~~Y~iy~Wa~~~n 76 (93)
T d3cx5h1 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHhhhhhceEEcchHHHHHHHHHHHHHHH
Confidence 46667777788889999999999999999988743
No 10
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=4.76 E-value=1.7e+02 Score=22.00 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=34.7
Q ss_pred hcccccccccccccccccCCCCCCccccCHHHHHHHHHHHHh
Q 007739 34 VSKEDALALADNSKQTNKKAEPKSPMILSTAQLIAAVGQLWD 75 (591)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (591)
.-|.+|.+++-=-.-||+++--.--+-||.+|...|++.+=+
T Consensus 25 TPd~YPLsLNaL~~aCNQKsnR~PVm~l~E~eV~~ald~L~~ 66 (84)
T d3bz6a1 25 NPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEG 66 (84)
T ss_dssp CGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred CCCcCcchHHHHHHHHccccccCccccCCHHHHHHHHHHHHH
Confidence 346778777777777999988887888999999999998865
Done!