BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007740
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
F FSF E++ T+NFD K+GEGG+G +YKG + + VA+K L
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL 62
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
F FSF E++ T+NFD K+GEGG+G +YKG + + VA+K L
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL 62
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
F FSF E++ T+NFD K+GEGG+G +YKG + + VA+K L
Sbjct: 6 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL 56
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
F FSF E++ T+NFD K GEGG+G +YKG + + VA+K L
Sbjct: 3 FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKL 53
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 501 SRKEASSSSHMPQFFS-DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKM 558
S +A SSS++ F S ++E AT+NFD IG G +G +YKG+LR +VA+K
Sbjct: 11 SINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
Query: 559 LHPHSLQG 566
P S QG
Sbjct: 71 RTPESSQG 78
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 501 SRKEASSSSHMPQFFS-DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKM 558
S +A SSS++ F S ++E AT+NFD IG G +G +YKG+LR +VA+K
Sbjct: 11 SINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
Query: 559 LHPHSLQG 566
P S QG
Sbjct: 71 RTPESSQG 78
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 504 EASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKG-LLRHMQVAIKMLHPH 562
E H+ Q FS E++ A+ NF +G GG+G +YKG L VA+K L
Sbjct: 7 EEDPEVHLGQL-KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEE 65
Query: 563 SLQGPS-EFQQEVGAYESFIFHFNLV 587
QG +FQ EV S H NL+
Sbjct: 66 RTQGGELQFQTEVEMI-SMAVHRNLL 90
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 504 EASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKG-LLRHMQVAIKMLHPH 562
E H+ Q FS E++ A+ NF +G GG+G +YKG L VA+K L
Sbjct: 15 EEDPEVHLGQL-KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEE 73
Query: 563 SLQGPS-EFQQEVGAYESFIFHFNLV 587
QG +FQ EV S H NL+
Sbjct: 74 RXQGGELQFQTEVEMI-SMAVHRNLL 98
>pdb|3D70|A Chain A, Crystal Structure Of E253a Mutant Of Bmrr Bound To 22-Bp
Oligonucleotide
Length = 284
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDEL 484
LE MKK D MEEL ++ E QI E LEQ I L++ K Q E
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQ---ERQIREKLDFLSALEQTI----SLVKKRMKRQMEY 118
Query: 485 QMERDKAVKEAEELRKSRKEA----------SSSSHMPQF------FSDFSFSEIEGATH 528
+ V + EE+R + EA +S S + +F F++ S+ GAT
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNNSY----GATF 174
Query: 529 NFDPSLKIGEGGYGSIYKGLLRHMQVA 555
+F P I E Y I+ +L + Q++
Sbjct: 175 SFQPYTSIDEMTYRHIFTPVLTNKQIS 201
>pdb|3D6Y|A Chain A, Crystal Structure Of R275e Mutant Of Bmrr Bound To Dna And
Berberine
pdb|3D6Z|A Chain A, Crystal Structure Of R275e Mutant Of Bmrr Bound To Dna And
Rhodamine
Length = 284
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDEL 484
LE MKK D MEEL ++ E QI E LEQ I L++ K Q E
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQ---ERQIREKLDFLSALEQTI----SLVKKRMKRQMEY 118
Query: 485 QMERDKAVKEAEELRKSRKEA----------SSSSHMPQF------FSDFSFSEIEGATH 528
+ V + EE+R + EA +S S + +F F++ S+ GAT
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNNSY----GATF 174
Query: 529 NFDPSLKIGEGGYGSIYKGLLRHMQVA 555
+F P I E Y I+ +L + Q++
Sbjct: 175 SFQPYTSIDEMTYRHIFTPVLTNKQIS 201
>pdb|1EXI|A Chain A, Crystal Structure Of Transcription Activator Bmrr, From B.
Subtilis, Bound To 21 Base Pair Bmr Operator And Tpsb
pdb|1EXJ|A Chain A, Crystal Structure Of Transcription Activator Bmrr, From B.
Subtilis, Bound To 21 Base Pair Bmr Operator And Tpp
pdb|1R8E|A Chain A, Crystal Structure Of Bmrr Bound To Dna At 2.4a Resolution
Length = 278
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDEL 484
LE MKK D MEEL ++ E QI E LEQ I L++ K Q E
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQ---ERQIREKLDFLSALEQTI----SLVKKRMKRQMEY 118
Query: 485 QMERDKAVKEAEELRKSRKEA----------SSSSHMPQF------FSDFSFSEIEGATH 528
+ V + EE+R + EA +S S + +F F++ S+ GAT
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNNSY----GATF 174
Query: 529 NFDPSLKIGEGGYGSIYKGLLRHMQVA 555
+F P I E Y I+ +L + Q++
Sbjct: 175 SFQPYTSIDEMTYRHIFTPVLTNKQIS 201
>pdb|3D71|A Chain A, Crystal Structure Of E253q Bmrr Bound To 22 Base Pair
Promoter Site
Length = 284
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDEL 484
LE MKK D MEEL ++ E QI E LEQ I L++ K Q E
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQ---ERQIREKLDFLSALEQTI----SLVKKRMKRQMEY 118
Query: 485 QMERDKAVKEAEELRKSRKEA----------SSSSHMPQF------FSDFSFSEIEGATH 528
+ V + EE+R + EA +S S + +F F++ S+ GAT
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNNSY----GATF 174
Query: 529 NFDPSLKIGEGGYGSIYKGLLRHMQVA 555
+F P I E Y I+ +L + Q++
Sbjct: 175 SFQPYTSIDEMTYRHIFTPVLTNKQIS 201
>pdb|3IAO|A Chain A, Conformational Plasticity Of The Coiled Coil Domain Of
Bmrr Required For Bmr Promoter Binding-The Unliganded
Structure
Length = 278
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDEL 484
LE MKK D MEEL ++ E QI E LEQ I L++ K Q E
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQ---ERQIREKLDFLSALEQTI----SLVKKRMKRQMEY 118
Query: 485 QMERDKAVKEAEELRKSRKEA----------SSSSHMPQF------FSDFSFSEIEGATH 528
+ V + EE+R + EA +S S + +F F++ S+ GAT
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNNSY----GATF 174
Query: 529 NFDPSLKIGEGGYGSIYKGLLRHMQVA 555
+F P I E Y I+ +L + Q++
Sbjct: 175 SFQPYTSIDEMTYRHIFTPVLTNKQIS 201
>pdb|3Q5P|A Chain A, Crystal Structure Of Bmrr Bound To Tetracycline
Length = 278
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDEL 484
LE MKK D MEEL ++ E QI E LEQ I L++ K Q E
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQ---ERQIREKLDFLSALEQTI----SLVKKRMKRQMEY 118
Query: 485 QMERDKAVKEAEELRKSRKEA----------SSSSHMPQF------FSDFSFSEIEGATH 528
+ V + EE+R + EA +S S + +F F++ S+ GAT
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGLGPENVLNASYSKLKKFIESADGFTNNSY----GATF 174
Query: 529 NFDPSLKIGEGGYGSIYKGLLRHMQVA 555
+F P I E Y I+ +L + Q++
Sbjct: 175 SFQPYTSIDEMTYRHIFTPVLTNKQIS 201
>pdb|3Q1M|A Chain A, Crystal Structure Of Bmrr Dimer Bound To Dna And The
Ligand 4-Amino- Quinaldine
pdb|3Q2Y|A Chain A, Crystal Structure Of Bmrr Bound To Ethidium
pdb|3Q3D|A Chain A, Crystal Structure Of Bmrr Bound To Puromycin
pdb|3Q5S|A Chain A, Crystal Structure Of Bmrr Bound To Acetylcholine
pdb|3Q5R|A Chain A, Crystal Structure Of Bmrr Bound To Kanamycin
Length = 284
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDEL 484
LE MKK D MEEL ++ E QI E LEQ I L++ K Q E
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQ---ERQIREKLDFLSALEQTI----SLVKKRMKRQMEY 118
Query: 485 QMERDKAVKEAEELRKSRKEA----------SSSSHMPQF------FSDFSFSEIEGATH 528
+ V + EE+R + EA +S S + +F F++ S+ GAT
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGLGPENVLNASYSKLKKFIESADGFTNNSY----GATF 174
Query: 529 NFDPSLKIGEGGYGSIYKGLLRHMQVA 555
+F P I E Y I+ +L + Q++
Sbjct: 175 SFQPYTSIDEMTYRHIFTPVLTNKQIS 201
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 19 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 61
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 31 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 73
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 31 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 73
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 42 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 84
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 35 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 77
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 43 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 85
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 43 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 85
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 15 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 57
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 20 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 62
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 20 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 62
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 17 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 59
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 15 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 57
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLH-----PHSLQGPSEFQQEVGA 576
+IG G +G++YKG H VA+KML+ P LQ F+ EVG
Sbjct: 15 RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQA---FKNEVGV 57
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 91 TKFPASSLEEEKVQ--AYREIERQ------------DMHNHLDMCLLICRQMGVRAEKLD 136
+ FP + E +K + RE+ER+ MH+ +D CL + + R +D
Sbjct: 88 SSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLID 147
Query: 137 TESESTEKGILELISHYGIRKLV 159
+ E+ + I+ +++ Y I K +
Sbjct: 148 VDGETGSEMIVSVLTQYRILKFI 170
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 91 TKFPASSLEEEKVQ--AYREIERQ------------DMHNHLDMCLLICRQMGVRAEKLD 136
+ FP + E +K + RE+ER+ MH+ +D CL + + R +D
Sbjct: 87 SSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLID 146
Query: 137 TESESTEKGILELISHYGIRKLV 159
+ E+ + I+ +++ Y I K +
Sbjct: 147 VDGETGSEMIVSVLTQYRILKFI 169
>pdb|2VUW|A Chain A, Structure Of Human Haspin Kinase Domain
Length = 336
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGP 567
KIGEG +G +++ + H VAIK++ +++GP
Sbjct: 27 KIGEGVFGEVFQTIADHTPVAIKII---AIEGP 56
>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
Length = 352
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGP 567
KIGEG +G +++ + H VAIK++ +++GP
Sbjct: 43 KIGEGVFGEVFQTIADHTPVAIKII---AIEGP 72
>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
Pyrazolo-Pyrimidine Ligand
pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
Imidazo-Pyridazine Ligand
pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
Ligand
pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
5-Iodotubercidin
Length = 357
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGP 567
KIGEG +G +++ + H VAIK++ +++GP
Sbjct: 48 KIGEGVFGEVFQTIADHTPVAIKII---AIEGP 77
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 536 IGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSFI 591
IG G YG++YKG L VA+K+ S F E Y + + + FI
Sbjct: 21 IGRGRYGAVYKGSLDERPVAVKVF---SFANRQNFINEKNIYRVPLMEHDNIARFI 73
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 458 QTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSR 502
+T + E +I +++L+ YKK DE ++ER KAV E +R+++
Sbjct: 54 ETGRLQEDRIEETIQVLKEYKKLIDEFKVERXKAVA-TEAIRRAK 97
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 458 QTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSR 502
+T + E +I +++L+ YKK DE ++ER KAV E +R+++
Sbjct: 54 ETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA-TEAIRRAK 97
>pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
pdb|2J4R|B Chain B, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
Length = 308
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 458 QTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSR 502
+T + E +I +++L+ YKK DE ++ER KAV E +R+++
Sbjct: 49 ETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA-TEAIRRAK 92
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 530 FDPSLKIGEGGYGSIYKGLLRHMQ--VAIK 557
FD K+GEG YGS+YK + + VAIK
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIK 60
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 535 KIGEGGYGSIYKGLLRHMQ--VAIKML 559
+IG+G +G +YKG+ H + VAIK++
Sbjct: 26 RIGKGSFGEVYKGIDNHTKEVVAIKII 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,852,427
Number of Sequences: 62578
Number of extensions: 555736
Number of successful extensions: 2498
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 2391
Number of HSP's gapped (non-prelim): 169
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)