Your job contains 1 sequence.
>007742
MEFDEYEYLEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGK
RSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEK
ERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELER
ERERERELRERERDLEMRESRRYKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEF
FSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK
NLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETG
QCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDG
GGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA
VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV
DKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKFKS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007742
(591 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 1414 9.5e-150 2
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 683 3.1e-67 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 683 3.1e-67 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 683 3.1e-67 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 683 3.1e-67 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 681 5.1e-67 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 680 6.5e-67 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 680 6.5e-67 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 673 3.6e-66 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 673 3.6e-66 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 464 1.3e-65 2
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 663 4.1e-65 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 640 1.1e-62 1
UNIPROTKB|H0Y4X3 - symbol:RBM39 "RNA-binding protein 39" ... 368 1.6e-53 2
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 372 2.0e-53 2
UNIPROTKB|D4A5G0 - symbol:Rbm39 "Protein Rbm39" species:1... 368 6.1e-52 2
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 343 5.9e-50 2
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 502 4.7e-48 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 395 5.3e-47 2
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 371 5.3e-46 2
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 371 5.3e-46 2
WB|WBGene00021921 - symbol:Y55F3AM.3 species:6239 "Caenor... 312 4.9e-45 2
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 473 5.6e-45 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 473 5.6e-45 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 473 5.6e-45 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 470 1.2e-44 1
UNIPROTKB|J9P448 - symbol:RBM23 "Uncharacterized protein"... 425 6.8e-40 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 423 1.1e-39 1
UNIPROTKB|F6XHX3 - symbol:RBM23 "Uncharacterized protein"... 418 3.7e-39 1
UNIPROTKB|G3V546 - symbol:RBM23 "Probable RNA-binding pro... 305 3.5e-27 1
UNIPROTKB|Q5QP23 - symbol:RBM39 "RNA-binding protein 39" ... 278 2.6e-24 1
UNIPROTKB|Q5QP21 - symbol:RBM39 "RNA-binding protein 39" ... 254 9.0e-22 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 203 6.7e-16 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 203 6.7e-16 1
ZFIN|ZDB-GENE-050706-131 - symbol:u2af2a "U2 small nuclea... 148 9.2e-16 2
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 150 1.8e-15 3
ZFIN|ZDB-GENE-040426-1881 - symbol:u2af2b "U2 small nucle... 137 4.1e-15 2
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 150 4.7e-15 3
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 213 5.6e-15 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 213 5.6e-15 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 210 2.4e-14 1
UNIPROTKB|P26368 - symbol:U2AF2 "Splicing factor U2AF 65 ... 138 3.4e-14 2
MGI|MGI:98886 - symbol:U2af2 "U2 small nuclear ribonucleo... 138 3.4e-14 2
RGD|1597319 - symbol:LOC690372 "similar to U2 (RNU2) smal... 138 3.4e-14 2
UNIPROTKB|E2R0G3 - symbol:U2AF2 "Uncharacterized protein"... 137 4.4e-14 2
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 207 5.8e-14 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 148 5.9e-14 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 206 6.3e-14 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 148 7.9e-14 2
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 148 8.5e-14 2
UNIPROTKB|Q24JZ8 - symbol:U2AF2 "Uncharacterized protein"... 138 8.9e-14 2
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 148 9.3e-14 2
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 148 9.4e-14 2
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 162 1.6e-13 2
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 148 2.0e-13 2
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 148 2.0e-13 2
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 151 2.0e-13 2
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 148 2.1e-13 2
UNIPROTKB|K7ENG2 - symbol:U2AF2 "Splicing factor U2AF 65 ... 124 2.8e-13 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 196 6.0e-13 1
FB|FBgn0005411 - symbol:U2af50 "U2 small nuclear riboprot... 125 6.7e-13 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 185 2.6e-12 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 191 4.7e-12 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 132 6.1e-12 2
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 184 6.9e-12 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 177 7.3e-12 2
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 182 7.9e-12 2
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 182 7.9e-12 2
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 182 7.9e-12 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 175 1.2e-11 2
TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi... 160 1.2e-11 2
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 185 1.6e-11 1
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 185 1.6e-11 1
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 185 1.6e-11 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 175 1.7e-11 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 175 1.7e-11 2
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 179 1.8e-11 2
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 179 2.3e-11 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 173 2.3e-11 2
ASPGD|ASPL0000038712 - symbol:AN3427 species:162425 "Emer... 180 2.7e-11 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 173 3.0e-11 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 173 3.0e-11 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 173 3.0e-11 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 173 3.0e-11 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 173 3.0e-11 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 173 3.1e-11 2
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 180 3.5e-11 1
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 182 4.5e-11 1
UNIPROTKB|G3V2B4 - symbol:RBM23 "Probable RNA-binding pro... 159 5.0e-11 1
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 135 5.1e-11 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 173 5.9e-11 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 178 6.2e-11 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 184 6.2e-11 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 158 6.4e-11 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 178 6.6e-11 1
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 178 6.6e-11 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 178 6.6e-11 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 178 6.6e-11 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 178 6.6e-11 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 171 7.1e-11 2
WARNING: Descriptions of 1112 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 1414 (502.8 bits), Expect = 9.5e-150, Sum P(2) = 9.5e-150
Identities = 287/390 (73%), Positives = 320/390 (82%)
Query: 203 YKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK 262
+++KK+ EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK
Sbjct: 152 HRDKKD--EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK 209
Query: 263 GVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSN-TSAGGTATGPYGAID 321
GVGYIEFYDVMSVPMAIALSGQL LGQPVMVKPSEAEKNL QSN T+ GGT GP D
Sbjct: 210 GVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGT--GP---AD 264
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
RKLYVGNLHFNM+E QLR++FE FGPVELVQLPLD ETGQCKGFGF+QF QLEH+KAAQ
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 382 ALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTG 441
ALNGKLEI GRT+KVSSV+DH+GTQD+A KSA LALNAQSRA+LMQKLDR+G
Sbjct: 325 ALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSG 384
Query: 442 IATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECL 501
IATSI GSLGV P +NG+A NQ ++ + E +G PSECL
Sbjct: 385 IATSIVGSLGV-PGLNGAAFNQPGMN------PSFPTSVLPTTAIPSFVNEHVGLPSECL 437
Query: 502 LLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASA 561
LLKNMFDPA ET+P+FDLEI+ DV +ECSKYG V HIYVDK SAGFVYLRF+S EAAA+A
Sbjct: 438 LLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAA 497
Query: 562 QRAMHMRWFARRLISAIFMKPEDYEAKFKS 591
QRAMHMRWFA+++ISA FM P +YEAK K+
Sbjct: 498 QRAMHMRWFAQKMISATFMPPHEYEAKAKA 527
Score = 69 (29.3 bits), Expect = 9.5e-150, Sum P(2) = 9.5e-150
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 1 MEFDEYEYLEKTV 13
MEFDEYEYLEKTV
Sbjct: 1 MEFDEYEYLEKTV 13
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 161/390 (41%), Positives = 216/390 (55%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRT 440
LNG E+ GR +KV VT+ +A+ + L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE- 365
Query: 441 GIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSEC 500
G I + A ++GS AA ++C
Sbjct: 366 GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQC 425
Query: 501 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAA 559
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 426 FQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAI 485
Query: 560 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
+A A+H RWFA ++I+A ++ Y F
Sbjct: 486 AAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 161/390 (41%), Positives = 216/390 (55%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRT 440
LNG E+ GR +KV VT+ +A+ + L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE- 365
Query: 441 GIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSEC 500
G I + A ++GS AA ++C
Sbjct: 366 GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQC 425
Query: 501 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAA 559
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 426 FQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAI 485
Query: 560 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
+A A+H RWFA ++I+A ++ Y F
Sbjct: 486 AAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 161/390 (41%), Positives = 216/390 (55%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRT 440
LNG E+ GR +KV VT+ +A+ + L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE- 365
Query: 441 GIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSEC 500
G I + A ++GS AA ++C
Sbjct: 366 GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQC 425
Query: 501 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAA 559
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 426 FQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAI 485
Query: 560 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
+A A+H RWFA ++I+A ++ Y F
Sbjct: 486 AAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 161/390 (41%), Positives = 216/390 (55%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRT 440
LNG E+ GR +KV VT+ +A+ + L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE- 365
Query: 441 GIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSEC 500
G I + A ++GS AA ++C
Sbjct: 366 GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQC 425
Query: 501 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAA 559
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 426 FQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAI 485
Query: 560 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
+A A+H RWFA ++I+A ++ Y F
Sbjct: 486 AAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 165/393 (41%), Positives = 222/393 (56%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DR 439
LNG E+ GR +KV VT+ +A+ + L R LM +L +
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEG 366
Query: 440 TGIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSP-- 497
TG L + PA + Q + SL +AA P
Sbjct: 367 TG--------LQIPPAAQQAL--QMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLA 416
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTE 556
++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 476
Query: 557 AAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 477 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 509
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 162/390 (41%), Positives = 218/390 (55%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRT 440
LNG E+ GR +KV VT+ +A+ + L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE- 365
Query: 441 GIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSEC 500
G I + A ++GS L AA ++C
Sbjct: 366 GTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQNEVFFPIKTVLA-AAASVQPLATQC 424
Query: 501 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAA 559
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 425 FQLSNMFNPQTEEEAGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAI 484
Query: 560 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
+A A+H RWFA ++I+A ++ Y + F
Sbjct: 485 AAVNALHGRWFAGKMITAAYVPLPTYHSLF 514
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 162/390 (41%), Positives = 221/390 (56%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K++ V +P PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 129 KDRSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRR 188
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ YIEF D SVP+AI LSGQ LLG P++V+ S+AEKN ++ A G G +
Sbjct: 189 SKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKN--RAAALANNLQKGSAGPM 246
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG ++ +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 247 --RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKAL 304
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRT 440
LNG E+ GR +KV VT+ TA+ + L R LM +L
Sbjct: 305 EQLNG-FELAGRPMKVGHVTERTDAS-TASSFLDNDELERTGIDLGTTGRLQLMARLAE- 361
Query: 441 GIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSEC 500
G I + A ++GS V A + N+ ++ I + C
Sbjct: 362 GTGLQIPPAAQQALQMSGSMV-AMAAATAAMNPGLSFNINVPTNQALNLPSQPIAT--HC 418
Query: 501 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAA 559
L NMF+P E D +++EIQ DV EEC+K+G V HIYVDK+SA G VY++ + AA
Sbjct: 419 FQLSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAM 478
Query: 560 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
+A A+H RWF ++I+A ++ Y F
Sbjct: 479 AAVSALHGRWFGGKMITAAYVPLPTYHNLF 508
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 165/394 (41%), Positives = 222/394 (56%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DR 439
LNG E+ GR +KV VT+ +A+ + L R LM +L +
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEG 366
Query: 440 TGIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSP-- 497
TG L + PA + Q + SL +AA P
Sbjct: 367 TG--------LQIPPAAQQAL--QMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLA 416
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTE 556
++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 476
Query: 557 AAASAQRAMHMRWFAR-RLISAIFMKPEDYEAKF 589
AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 477 AAIAAVNALHGRWFAAGKMITAAYVPLPTYHNLF 510
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 165/394 (41%), Positives = 222/394 (56%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DR 439
LNG E+ GR +KV VT+ +A+ + L R LM +L +
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEG 366
Query: 440 TGIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSP-- 497
TG L + PA + Q + SL +AA P
Sbjct: 367 TG--------LQIPPAAQQAL--QMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLA 416
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTE 556
++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 476
Query: 557 AAASAQRAMHMRWFAR-RLISAIFMKPEDYEAKF 589
AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 477 AAIAAVNALHGRWFAAGKMITAAYVPLPTYHNLF 510
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 464 (168.4 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/260 (42%), Positives = 153/260 (58%)
Query: 213 EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
E PE RD RTVF Q+ + RD+ EFFS GKVRDVRLI ++R KG+ YIEF D
Sbjct: 228 ELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDD 287
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSA--GGTATGPYGAIDRKLYVGNL 329
SV +A+ LSGQ LLG P+MV+ ++AEKN +Q+ A + TGP +LYVG+L
Sbjct: 288 PESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPM-----RLYVGSL 342
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
HFN+TE LR +FEPFG ++ +QL +D ETG+ KG+GF+ + + AK A LNG E+
Sbjct: 343 HFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNG-FEL 401
Query: 390 VGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIAT-SIA 447
GR +KV +VT+ + T S + L A R LM KL + G+A A
Sbjct: 402 AGRLMKVGNVTERLDMNTT---SLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAA 458
Query: 448 GSLGVAPAVNGSAVNQQAIS 467
+ +A A + + QQ ++
Sbjct: 459 ANALLATAPQPAPLQQQEVA 478
Score = 222 (83.2 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS-AGFVYLRFESTE 556
++C +L NMFDP ET+P +D+EI+ DV EEC+K+G V HI+VD S G VY++ ST
Sbjct: 483 TQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTT 542
Query: 557 AAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
A A A+H RWFA R+I+A ++ +Y F
Sbjct: 543 TAVLAVNALHGRWFAGRVITAAYVPVINYHTMF 575
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 158/390 (40%), Positives = 219/390 (56%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V +P PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRR
Sbjct: 147 KDKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRR 206
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF D SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G GA
Sbjct: 207 SKGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMASMLQRG--GAG 262
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ FA E AK A
Sbjct: 263 PMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKAL 322
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRT 440
LNG E+ GR +KV VT+ +A+ + L R LM +L
Sbjct: 323 EQLNG-FELAGRPMKVGHVTER-SDASSASSFLDNDELERTGIDLGTTGRLQLMARLAE- 379
Query: 441 GIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSEC 500
G I + A ++GS ++ N+ + + + C
Sbjct: 380 GTGLQIPAAAKQALQMSGSV---SFGNMPNASATPPLIPNPGMNQAMNLPTQPLAT--HC 434
Query: 501 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAA 559
L L NMF+P ME +P +D+EI+ DV EEC K+G V HIYVDK SA G VY++ + A
Sbjct: 435 LQLSNMFNPQMENEPGWDIEIRDDVIEECRKHGGVIHIYVDKNSAQGNVYVKCPTIPVAM 494
Query: 560 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
+ ++H RWFA ++I+A ++ Y F
Sbjct: 495 AVVSSLHGRWFAGKMITAAYVPLPTYHNLF 524
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 148/364 (40%), Positives = 202/364 (55%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLL 286
Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ Y+EF DV SVP+AI L+GQ +
Sbjct: 2 QLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRV 61
Query: 287 LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG 346
LG P++V+ S+AEKN ++ A G G + +LYVG+LHFN+TE LR +FEPFG
Sbjct: 62 LGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLYVGSLHFNITEDMLRGIFEPFG 117
Query: 347 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQ 406
+E +QL +D ETG+ KG+GF+ F+ E AK A LNG E+ GR +KV VT+
Sbjct: 118 RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDAS 176
Query: 407 DTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAI 466
+A+ + L R LM +L G I + A ++GS
Sbjct: 177 -SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQIPPAAQQALQMSGSLAFGAVA 234
Query: 467 SLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVE 526
AA ++C L NMF+P E + +D EI+ DV
Sbjct: 235 EFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVI 294
Query: 527 EECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 585
EEC+K+G V HIYVDK SA G VY++ S AA +A A+H RWFA ++I+A ++ Y
Sbjct: 295 EECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 354
Query: 586 EAKF 589
F
Sbjct: 355 HNLF 358
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 368 (134.6 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 79/146 (54%), Positives = 100/146 (68%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 6 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 65
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 66 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 123
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFG 346
+LYVG+LHFN+TE LR +FEPFG
Sbjct: 124 --RLYVGSLHFNITEDMLRGIFEPFG 147
Score = 203 (76.5 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 67/218 (30%), Positives = 92/218 (42%)
Query: 346 GPVELV--QLPLDIETGQCKGF--GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
GP+ L L +I +G F +F+ E AK A LNG E+ GR +KV VT+
Sbjct: 121 GPMRLYVGSLHFNITEDMLRGIFEPFGRFSDSECAKKALEQLNG-FELAGRPMKVGHVTE 179
Query: 402 HVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAV 461
+A+ + L R LM +L G I + A ++GS
Sbjct: 180 RTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQIPPAAQQALQMSGSLA 237
Query: 462 NQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEI 521
AA ++C L NMF+P E + +D EI
Sbjct: 238 FGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEI 297
Query: 522 QGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAA 558
+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 298 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAA 335
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 372 (136.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 81/198 (40%), Positives = 122/198 (61%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 273
++ ERD+RTVF Q+ + T R++Y+FF +AG VRD +++ D+ S RSKGV Y+EF
Sbjct: 233 SEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHED 292
Query: 274 SVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID-RKLYVGNLHFN 332
SV AIALSG+ LLG PV+V+ +EAEKN + A A I +L V N+HFN
Sbjct: 293 SVQAAIALSGKRLLGLPVIVQLTEAEKN--RKAREAAELARAASAEIPFHRLCVSNIHFN 350
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
+T+ ++ +FEPFG +E V L D + + KGFG++Q+ A+ A +NG ++ GR
Sbjct: 351 LTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG-FDLAGR 408
Query: 393 TLKVSSVTDHVGTQDTAA 410
++V D T+ T++
Sbjct: 409 NMRVCLGNDKFTTETTSS 426
Score = 207 (77.9 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTE 556
S C LL+NMF+PA ET P++ E++ DV+EEC KYG+V HI V G ++++FE+ +
Sbjct: 505 SRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENAD 564
Query: 557 AAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
A A +H RWF R I A + DY KF
Sbjct: 565 FAEKAITGLHQRWFGGRTIKASILPETDYYFKF 597
>UNIPROTKB|D4A5G0 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01622 EMBL:AC118414 IPI:IPI00951290
ProteinModelPortal:D4A5G0 Ensembl:ENSRNOT00000068388
ArrayExpress:D4A5G0 Uniprot:D4A5G0
Length = 440
Score = 368 (134.6 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 79/146 (54%), Positives = 100/146 (68%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 124 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 183
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 184 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 241
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFG 346
+LYVG+LHFN+TE LR +FEPFG
Sbjct: 242 --RLYVGSLHFNITEDMLRGIFEPFG 265
Score = 188 (71.2 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 61/204 (29%), Positives = 84/204 (41%)
Query: 346 GPVELV--QLPLDIETGQCKGF--GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
GP+ L L +I +G F +F+ E AK A LNG E+ GR +KV VT+
Sbjct: 239 GPMRLYVGSLHFNITEDMLRGIFEPFGRFSDSECAKKALEQLNG-FELAGRPMKVGHVTE 297
Query: 402 HVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAV 461
+A+ + L R LM +L G I + A ++GS
Sbjct: 298 RTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQIPPAAQQALQMSGSLA 355
Query: 462 NQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEI 521
AA ++C L NMF+P E + +D EI
Sbjct: 356 FGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEI 415
Query: 522 QGDVEEECSKYGRVKHIYVDKRSA 545
+ DV EEC+K+G V HIYVDK SA
Sbjct: 416 KDDVIEECNKHGGVIHIYVDKNSA 439
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 343 (125.8 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 76/197 (38%), Positives = 120/197 (60%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
PE D E DQRTVF ++ E+D+ + FS+AG V +VRLI D+ ++R KGVGY+EF
Sbjct: 257 PEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQ 316
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
V AIALSG +L GQ ++V + EK +++SN+ TG G + ++YVG +H
Sbjct: 317 KEMVDKAIALSGSVLDGQQILVHSIQPEKKVIKSNS------TGSSGG-ESRIYVGYIHL 369
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
++ E Q+R +F+P+G ++ + + + G K + F+QF E AK A + LNG E++G
Sbjct: 370 SVAEEQIRVIFQPYGDIDFINI--HTKPGISK-YAFIQFKTQESAKRAITELNG-YELMG 425
Query: 392 RTLKVSSVTDHVGTQDT 408
+ LK++ V+ + T
Sbjct: 426 KNLKLNMVSQEKNSNGT 442
Score = 211 (79.3 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 35/92 (38%), Positives = 61/92 (66%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEA 557
S CL+L+NMFDP ET+ ++D +I + ECS +G++ HIY+DK + G +Y+R+++ E+
Sbjct: 634 STCLILRNMFDPETETEENWDQDILSETHAECSTFGKIMHIYLDKNTKGCIYIRYDNNES 693
Query: 558 AASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
A + +H RWF+++ I A + Y+ +F
Sbjct: 694 PLKAIQKLHGRWFSKKQIIAELVPEPVYKLQF 725
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 113/243 (46%), Positives = 150/243 (61%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G +
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM 250
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 --RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DR 439
LNG E+ GR +KV VT+ +A+ + L R LM +L +
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEG 366
Query: 440 TGI 442
TG+
Sbjct: 367 TGL 369
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 395 (144.1 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 88/208 (42%), Positives = 129/208 (62%)
Query: 212 PEA-DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 270
PE + ERD+RT+F Q+ + +++ FF K G V++ +++ DR S RSKGVGY+EF
Sbjct: 164 PELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFK 223
Query: 271 DVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNT--SAGGTATGPYGAIDRKLYVGN 328
D SV AI L+GQ LLG P++ + +EAEKN N+ S+G + P+ +LYVGN
Sbjct: 224 DESSVAPAIQLTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSAPF----HRLYVGN 279
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLE 388
+HF++ E L+ +FEPFG +E VQL D ETG+ +G+GFVQF A+ A +NG +
Sbjct: 280 IHFSIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEKMNG-YD 337
Query: 389 IVGRTLKVSSVTDHV---GTQDTAAKSA 413
+ GR ++V D TQ T ++SA
Sbjct: 338 LGGRAIRVGLGNDKFTPENTQRTQSQSA 365
Score = 114 (45.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 520 EIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISA 577
E++ DV EC KYG V HI +D S G +YL+F+ + +A + ++ R+F R I+A
Sbjct: 476 ELEDDVRAECEEKYGHVVHIALDPNSQGDIYLKFDRVQGGENAIKGLNGRFFGGRQITA 534
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 371 (135.7 bits), Expect = 5.3e-46, Sum P(2) = 5.3e-46
Identities = 83/202 (41%), Positives = 125/202 (61%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSK-AGKVRDVRLIMDRNSRRSK 262
+E++ + E + +RD TV + LKA ERD+YEFFS+ AGKVRD++ I D+ S +SK
Sbjct: 470 REERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSK 529
Query: 263 GVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 322
GV Y+EFY +V A+A +G +L +P+ ++ S+AEKN ++ +A P I
Sbjct: 530 GVAYVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKN--RAAKAAKHQPIDP-NDIPL 586
Query: 323 KLYVGNLH---FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
KLY+G L N+TE +L++LF PFG + V++ D TG+ KGFGF+QF + A A
Sbjct: 587 KLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEA 646
Query: 380 QSALNGKLEIVGRTLKVSSVTD 401
+ +NG +E+ GR +KV D
Sbjct: 647 LTVMNG-MEVAGREIKVGYAQD 667
Score = 148 (57.2 bits), Expect = 5.3e-46, Sum P(2) = 5.3e-46
Identities = 31/90 (34%), Positives = 59/90 (65%)
Query: 501 LLLKNMF---DPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTE 556
L+L NMF D + +DPDF +I DV+EECSKYG+V +I++D ++ G +Y+++ + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 557 AAASAQRAMHMRWFARRLISAIFMKPEDYE 586
+ + + ++ R+F LI+A F+ + ++
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 371 (135.7 bits), Expect = 5.3e-46, Sum P(2) = 5.3e-46
Identities = 83/202 (41%), Positives = 125/202 (61%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSK-AGKVRDVRLIMDRNSRRSK 262
+E++ + E + +RD TV + LKA ERD+YEFFS+ AGKVRD++ I D+ S +SK
Sbjct: 470 REERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSK 529
Query: 263 GVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 322
GV Y+EFY +V A+A +G +L +P+ ++ S+AEKN ++ +A P I
Sbjct: 530 GVAYVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKN--RAAKAAKHQPIDP-NDIPL 586
Query: 323 KLYVGNLH---FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
KLY+G L N+TE +L++LF PFG + V++ D TG+ KGFGF+QF + A A
Sbjct: 587 KLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEA 646
Query: 380 QSALNGKLEIVGRTLKVSSVTD 401
+ +NG +E+ GR +KV D
Sbjct: 647 LTVMNG-MEVAGREIKVGYAQD 667
Score = 148 (57.2 bits), Expect = 5.3e-46, Sum P(2) = 5.3e-46
Identities = 31/90 (34%), Positives = 59/90 (65%)
Query: 501 LLLKNMF---DPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTE 556
L+L NMF D + +DPDF +I DV+EECSKYG+V +I++D ++ G +Y+++ + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 557 AAASAQRAMHMRWFARRLISAIFMKPEDYE 586
+ + + ++ R+F LI+A F+ + ++
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 312 (114.9 bits), Expect = 4.9e-45, Sum P(2) = 4.9e-45
Identities = 85/256 (33%), Positives = 132/256 (51%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K +E A+ ERDQRT+ Q+ RD+ EFFS G VRDVR+I D + RSKG+
Sbjct: 156 KNAKLELTAE-ERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGIC 214
Query: 266 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTA--TGPYGAIDRK 323
Y+EF+D SVP+ +AL+GQ L+G P+ ++ + AE+N +N+S T P
Sbjct: 215 YVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRA-ANSSVASTLGFVAPGNKGPTH 273
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
+ V NLH + E +R +FE FG +E + L +D + +GF + F + A+ + L
Sbjct: 274 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVD-SNRENRGFATITFRNADDAQKSCEQL 332
Query: 384 NGKLEIVGRTLKVS----SVTDHVGTQDTAA-KSAXXXXXXXXXLALNAQSRALLMQKLD 438
N E+ GR +++S S V ++ + + + +L A R LM KL
Sbjct: 333 NN-FELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLA 391
Query: 439 R-TGIATSIAGSLGVA 453
+ TG + S +A
Sbjct: 392 QGTGSGMELTASAQMA 407
Score = 191 (72.3 bits), Expect = 4.9e-45, Sum P(2) = 4.9e-45
Identities = 44/108 (40%), Positives = 64/108 (59%)
Query: 489 MAAEFIGS---PS---ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK 542
MAA+ G PS +C LL NMFDP+ ET+P +D +I+ DV E+C +G H++VDK
Sbjct: 406 MAAQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDK 465
Query: 543 RSA-GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
S G VY++ S A A A+H RWF+ ++I+A ++ Y F
Sbjct: 466 GSEQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPVNSYHDLF 513
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 120/313 (38%), Positives = 170/313 (54%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 160 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 219
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
RSKG+ Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G
Sbjct: 220 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSGGP 277
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
+ +LYVG+LH N+TE LR + EPFG ++ + L D ETG+ KG+GF+ F+ E A+ A
Sbjct: 278 V--RLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRA 335
Query: 380 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-D 438
LNG E+ GR +++ VT+ D L +A LM KL +
Sbjct: 336 LEQLNG-FELAGRPMRIGHVTER---PDGGTDITFPDGDQELDLG-SAGGHLQLMAKLAE 390
Query: 439 RTGIA--TSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGS 496
+GI T+ A + VA A A Q ++ N+A++ I S
Sbjct: 391 GSGIQLPTTTAAAAAVAQAAAAQAAALQ-LNGADPLGALNPAALTALSPALNLASQAIAS 449
Query: 497 PSECLLLKNMFDP 509
+C L ++F P
Sbjct: 450 --QCFQLSSLFTP 460
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 111/264 (42%), Positives = 155/264 (58%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 146 FREKSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 205
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
RSKG+ Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G
Sbjct: 206 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSSGP 263
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
+ +LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A
Sbjct: 264 M--RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 321
Query: 380 QSALNGKLEIVGRTLKVSSVTDHV--GTQDTA--AKSAXXXXXXXXXLALNAQSRALLMQ 435
LNG E+ GR ++V VT+ + GT T + L L A+
Sbjct: 322 LEQLNG-FELAGRPMRVGHVTERLDGGTDITFPDGEQELDLGSAGGRLQLMAKLAEGSGI 380
Query: 436 KLDRTGIATSIAGSLGVAPAVNGS 459
+L T A + A A +NG+
Sbjct: 381 QLPTTAAAAAAAAQAAAALQLNGT 404
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 115/272 (42%), Positives = 162/272 (59%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 136 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 195
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLV--QSNTSAGGTATGPY 317
RSKG+ Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + +N GT GP
Sbjct: 196 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTG-GPM 254
Query: 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+
Sbjct: 255 -----RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 309
Query: 378 AAQSALNGKLEIVGRTLKVSSVTDHV-GTQDTAAKSAXXXXXXXXXLALNAQSRALLMQK 436
A LNG E+ GR +++ VT+ + G+ D +A R LM K
Sbjct: 310 RALEQLNG-FELAGRPMRIGHVTERLDGSTDITFPDGDQELDLG-----SAGGRLQLMAK 363
Query: 437 L-DRTGIATSIAGSLGVAPAVNGSAVNQQAIS 467
L + +GI +L + AV A+N A++
Sbjct: 364 LAEGSGIQLPTT-ALQLNGAVPLGALNPAALT 394
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 111/263 (42%), Positives = 154/263 (58%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 145 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 204
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
RSKG+ Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G
Sbjct: 205 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGNGGP 262
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
+ +LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A
Sbjct: 263 M--RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 320
Query: 380 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-D 438
LNG E+ GR ++V VT+ + D L +A R LM KL +
Sbjct: 321 LEQLNG-FELAGRPMRVGHVTERL---DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAE 375
Query: 439 RTGIATSIAGSLGVAPAVNGSAV 461
GI + A A +A+
Sbjct: 376 GAGIQLPSTAAAAAAAAAQAAAL 398
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 115/312 (36%), Positives = 163/312 (52%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 158 FREKSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 217
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
RSKG+ Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G
Sbjct: 218 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSSGP 275
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKA 378
+ +LYVG+LHFN+TE LR +FEPFG V VQ + T + +F+ E A+
Sbjct: 276 M--RLYVGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARR 333
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL- 437
A LNG E+ GR ++V VT+ + D L +A R LM KL
Sbjct: 334 ALEQLNG-FELAGRPMRVGHVTERL---DGGTDITFPDGEQELDLG-SAGGRLQLMAKLA 388
Query: 438 DRTGIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSP 497
+ +GI + A A +A+ ++ N+A++ I S
Sbjct: 389 EGSGIQLPTTAAAAAAAAQAAAALQ---LNGTVPLGGLNPAALTALSPALNLASQAIAS- 444
Query: 498 SECLLLKNMFDP 509
+C L ++F P
Sbjct: 445 -QCFQLSSLFTP 455
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 98/236 (41%), Positives = 139/236 (58%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLL 286
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ Y+EF ++ SVP+AI L+GQ L
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 61
Query: 287 LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG 346
LG P++V+ S+AEKN + + A G G + +LYVG+LHFN+TE LR +FEPFG
Sbjct: 62 LGVPIIVQASQAEKNRLAA--MANNLQKGNGGPM--RLYVGSLHFNITEDMLRGIFEPFG 117
Query: 347 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQ 406
++ + L D +TG+ KG+GF+ F+ E A+ A LNG E+ GR ++V VT+ +
Sbjct: 118 KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVGHVTERL--- 173
Query: 407 DTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIATSIAGSLGVAPAVNGSAV 461
D L +A R LM KL + GI + A A +A+
Sbjct: 174 DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAAL 228
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 107/265 (40%), Positives = 147/265 (55%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 130 FREKSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 189
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
RSKG+ Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G
Sbjct: 190 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSSGP 247
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKA 378
+ +LYVG+LHFN+TE LR +FEPFG V VQ + T + +F+ E A+
Sbjct: 248 M--RLYVGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARR 305
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHV--GTQDTA--AKSAXXXXXXXXXLALNAQSRALLM 434
A LNG E+ GR ++V VT+ + GT T + L L A+
Sbjct: 306 ALEQLNG-FELAGRPMRVGHVTERLDGGTDITFPDGEQELDLGSAGGRLQLMAKLAEGSG 364
Query: 435 QKLDRTGIATSIAGSLGVAPAVNGS 459
+L T A + A A +NG+
Sbjct: 365 IQLPTTAAAAAAAAQAAAALQLNGT 389
>UNIPROTKB|G3V546 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V546 SMR:G3V546 Ensembl:ENST00000557403
ArrayExpress:G3V546 Bgee:G3V546 Uniprot:G3V546
Length = 115
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 62/118 (52%), Positives = 84/118 (71%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLL 286
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ Y+EF ++ SVP+AI L+GQ L
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 61
Query: 287 LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEP 344
LG P++V+ S+AEKN + + A G G + +LYVG+LHFN+TE LR +FEP
Sbjct: 62 LGVPIIVQASQAEKNRLAA--MANNLQKGNGGPM--RLYVGSLHFNITEDMLRGIFEP 115
>UNIPROTKB|Q5QP23 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 HOVERGEN:HBG057646
TIGRFAMs:TIGR01622 UniGene:Hs.282901 HGNC:HGNC:15923
HOGENOM:HOG000236253 ChiTaRS:RBM39 IPI:IPI00647282 SMR:Q5QP23
STRING:Q5QP23 Ensembl:ENST00000374038 Uniprot:Q5QP23
Length = 231
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 58/100 (58%), Positives = 72/100 (72%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 132 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 191
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK 300
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEK
Sbjct: 192 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEK 231
>UNIPROTKB|Q5QP21 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL357374
IPI:IPI00514831 UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
SMR:Q5QP21 STRING:Q5QP21 Ensembl:ENST00000427743 Uniprot:Q5QP21
Length = 202
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 53/92 (57%), Positives = 65/92 (70%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 111 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 170
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVM 292
SKG+ Y+EF DV SVP+AI L+GQ +LG P++
Sbjct: 171 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPII 202
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 203 (76.5 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 51/140 (36%), Positives = 74/140 (52%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
+LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 383 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTG 441
LNG E+ GR ++V VT+ + D L +A R LM KL + G
Sbjct: 74 LNG-FELAGRPMRVGHVTERL---DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAEGAG 128
Query: 442 IATSIAGSLGVAPAVNGSAV 461
I + A A +A+
Sbjct: 129 IQLPSTAAAAAAAAAQAAAL 148
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 203 (76.5 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 51/140 (36%), Positives = 74/140 (52%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
+LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A
Sbjct: 39 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 98
Query: 383 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTG 441
LNG E+ GR ++V VT+ + D L +A R LM KL + G
Sbjct: 99 LNG-FELAGRPMRVGHVTERL---DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAEGAG 153
Query: 442 IATSIAGSLGVAPAVNGSAV 461
I + A A +A+
Sbjct: 154 IQLPSTAAAAAAAAAQAAAL 173
>ZFIN|ZDB-GENE-050706-131 [details] [associations]
symbol:u2af2a "U2 small nuclear RNA auxiliary
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
Uniprot:E7F8Y4
Length = 470
Score = 148 (57.2 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 47/205 (22%), Positives = 92/205 (44%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS---KAGKVRDV--RLIMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE + +FF+ + G + ++ + K ++EF V
Sbjct: 139 RQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 198
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSAGGTATGPYGAID-------RK 323
A+A G + GQ + ++ + L + N S + P G + K
Sbjct: 199 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGSLPVGVVSTVVPDSAHK 258
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
L++G L + + Q+++L FGP++ L D TG KG+ F ++ + + A + L
Sbjct: 259 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNISDQAIAGL 318
Query: 384 NGKLEIVGRTLKVSSVTDHVGTQDT 408
NG +++ + L V + VG+++T
Sbjct: 319 NG-MQLGDKKLLVQRAS--VGSKNT 340
Score = 122 (48.0 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 33/101 (32%), Positives = 49/101 (48%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV-------DKRSAGF 547
G P+E L L NM P D + EI DV +ECSKYG+VK I + D G
Sbjct: 367 GIPTEVLCLMNMVAPEELLDDEEYEEIVEDVRDECSKYGQVKSIEIPRPVDGLDIPGTGK 426
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S + A + + R FA R++ + P+ Y +
Sbjct: 427 IFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRR 467
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 150 (57.9 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
++Y+G++++N+TE Q+R +F FG V L + +TG+ KGFGFV F + A A +
Sbjct: 770 RIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIAT 829
Query: 383 LNGKLEIVGRTLKVSSVT 400
+NG E++GR++KV T
Sbjct: 830 MNG-FELLGRSIKVGRPT 846
Score = 127 (49.8 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA-KAAQS 381
++YVG+LHF++TE +R F FG ++ + L D +G+ KG+ F+++ E A KA QS
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKALQS 647
Query: 382 ALNGKLEIVGRTLKVS 397
N + GR +KV+
Sbjct: 648 MTN--YVMCGRAIKVA 661
Score = 98 (39.6 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 497 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF-VYLRFEST 555
PS CL+LKN P D D + D+ C+++G ++ + + S VY+ F+
Sbjct: 945 PSRCLVLKNAGSP-----DDIDSSFEDDIRSGCNEFGEIEKLVIKSDSQSVKVYILFKDL 999
Query: 556 EAAASAQRAMHMRWFARRLISAIF 579
+ + Q ++ ++F+ I A F
Sbjct: 1000 YSGMACQSKLNGKYFSYHCIKAEF 1023
Score = 93 (37.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
P + ++ + TE V FS+ G+V L+ + ++ + KG G+++F S
Sbjct: 764 PINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSA 823
Query: 276 PMAIA-LSGQLLLGQPVMV-KPSEAEKNLVQSNTS 308
AIA ++G LLG+ + V +P+++ N +N S
Sbjct: 824 DDAIATMNGFELLGRSIKVGRPTKSSNNNNNNNNS 858
Score = 70 (29.7 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+DQ ++ + TE + FS G ++ + L D S +SKG +IE+ + S
Sbjct: 585 QDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAK 643
Query: 278 AI-ALSGQLLLGQPVMV 293
A+ +++ ++ G+ + V
Sbjct: 644 ALQSMTNYVMCGRAIKV 660
>ZFIN|ZDB-GENE-040426-1881 [details] [associations]
symbol:u2af2b "U2 small nuclear RNA auxiliary
factor 2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0046660 "female sex differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1881 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:BX950195 EMBL:BC065869
IPI:IPI00502836 RefSeq:NP_991252.1 UniGene:Dr.77328 SMR:Q6P022
STRING:Q6P022 Ensembl:ENSDART00000023571 GeneID:402989
KEGG:dre:402989 CTD:402989 InParanoid:Q6P022 OMA:HERDKEN
NextBio:20816796 Uniprot:Q6P022
Length = 475
Score = 137 (53.3 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 47/205 (22%), Positives = 90/205 (43%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS---KAGKVRDV--RLIMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE + +FF+ + G + ++ + K ++EF V
Sbjct: 149 RQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 208
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATGPYGAIDRKLYVG 327
A+A G + Q + ++ + L + N S G +T +I KL++G
Sbjct: 209 DETTQAMAFDGIIFQAQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSI-HKLFIG 267
Query: 328 NLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L + + Q+++L FGP++ L D TG KG+ F ++ + A + LNG +
Sbjct: 268 GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNVNDQAIAGLNG-M 326
Query: 388 EIVGRTLKVSSVTDHVGTQDTAAKS 412
++ + L V + VG ++ S
Sbjct: 327 QLADKKLLVQRAS--VGAKNATMTS 349
Score = 128 (50.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV-------DKRSAGF 547
G P+E L L NM P D + EI DV+EECSKYG+VK I + D G
Sbjct: 372 GIPTEVLCLMNMVAPEELIDDEEYEEIVEDVKEECSKYGQVKSIEIPRPVDGLDIPGTGK 431
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S + A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVYDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRR 472
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 150 (57.9 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 36/101 (35%), Positives = 59/101 (58%)
Query: 495 GSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVD-------KRSAG 546
GSP+E L L NM P + D +F+ +I+ D+++EC+K+G V+ I + KR G
Sbjct: 346 GSPTETLCLLNMVRPEELLDDEEFE-DIRTDIKQECAKFGEVRSIKIPRPIGQFPKRGCG 404
Query: 547 FVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 587
V+++FES E + A +A+ R F+ R++ + PE Y A
Sbjct: 405 KVFVQFESVEDSQKALKALSGRKFSGRIVMTSYYDPEKYLA 445
Score = 91 (37.1 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
K+YVG L + + Q+++L + FG ++ + L +D T KGF F ++ A +
Sbjct: 243 KIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAG 302
Query: 383 LNGKL 387
L+G L
Sbjct: 303 LHGML 307
Score = 83 (34.3 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
++ +P + V E G+++ + L+MD N+ +KG + E+ D AIA L
Sbjct: 244 IYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAGL 303
Query: 282 SGQLLLGQPVMVKPS 296
G LL + ++V+ S
Sbjct: 304 HGMLLGDRRLVVQRS 318
Score = 67 (28.6 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEP------FGPVELVQLP----LDIETGQCKGFGFVQFA 371
R+LYVGN+ F +T+ ++ + F F + L +T K F F++F
Sbjct: 111 RRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFR 170
Query: 372 QLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402
++ A A + +G + G+TLK+ D+
Sbjct: 171 SIDEASQALN-FDGMV-FRGQTLKIRRPHDY 199
Score = 58 (25.5 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 15/87 (17%), Positives = 35/87 (40%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS----------KAGKVRDVRLIMDRNSRRSKGVGYI 267
R R ++ +P T+ ++ +FF+ K+ D ++ + K ++
Sbjct: 108 RQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFL 167
Query: 268 EFYDVMSVPMAIALSGQLLLGQPVMVK 294
EF + A+ G + GQ + ++
Sbjct: 168 EFRSIDEASQALNFDGMVFRGQTLKIR 194
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 213 (80.0 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 56/198 (28%), Positives = 97/198 (48%)
Query: 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 270
+P A E + T+F ++ + + F G V R+IM+R + +S+G GY++F
Sbjct: 159 KPAASTE-EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFE 217
Query: 271 DVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNL 329
+ A+ + G+ + G+P+ + S + + +SN L++GNL
Sbjct: 218 SKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNL 277
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
FN L +F +G V ++P +T Q KGFG+VQF+ ++ AKAA A+NG+ I
Sbjct: 278 SFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEY-I 336
Query: 390 VGRTLKVSSVTDHVGTQD 407
GR ++ T T +
Sbjct: 337 EGRPCRLDFSTPRDNTNN 354
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 213 (80.0 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 56/198 (28%), Positives = 97/198 (48%)
Query: 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 270
+P A E + T+F ++ + + F G V R+IM+R + +S+G GY++F
Sbjct: 159 KPAASTE-EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFE 217
Query: 271 DVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNL 329
+ A+ + G+ + G+P+ + S + + +SN L++GNL
Sbjct: 218 SKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNL 277
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
FN L +F +G V ++P +T Q KGFG+VQF+ ++ AKAA A+NG+ I
Sbjct: 278 SFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEY-I 336
Query: 390 VGRTLKVSSVTDHVGTQD 407
GR ++ T T +
Sbjct: 337 EGRPCRLDFSTPRDNTNN 354
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 210 (79.0 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 58/203 (28%), Positives = 100/203 (49%)
Query: 208 EVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYI 267
++ +P D + TVF ++ ++ + + F + G + R+IMD S RSKG GY+
Sbjct: 251 KITKPSQD-SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYV 309
Query: 268 EFYDVMSVPMAIALSGQLLL-GQPVMV-----KPSEAEKNLVQSNTSAGGTATGPYGAID 321
+F + A+A +G + G+ V + +P+ + Q + G + P +
Sbjct: 310 DFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTV- 368
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
+VGNL FN TE L F G ++ ++LP D ++G+ KGFG+V F+ ++ AK
Sbjct: 369 ---FVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE 425
Query: 382 ALNGKLEIVGRTLKVSSVTDHVG 404
+NG I GR ++ T G
Sbjct: 426 -MNGHF-IAGRPCRLDFSTPRTG 446
>UNIPROTKB|P26368 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
"C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
Uniprot:P26368
Length = 475
Score = 138 (53.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 49/206 (23%), Positives = 91/206 (44%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS---KAGKVRDV--RLIMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE + +FF+ + G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-PYGAIDRKLYV 326
A+A G + GQ + ++ + L + N S G +T P A KL++
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSA--HKLFI 263
Query: 327 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
G L + + Q+++L FGP++ L D TG KG+ F ++ + A + LNG
Sbjct: 264 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG- 322
Query: 387 LEIVGRTLKVSSVTDHVGTQDTAAKS 412
+++ + L V + VG ++ S
Sbjct: 323 MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 118 (46.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 547
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
>MGI|MGI:98886 [details] [associations]
symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
Uniprot:P26369
Length = 475
Score = 138 (53.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 49/206 (23%), Positives = 91/206 (44%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS---KAGKVRDV--RLIMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE + +FF+ + G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-PYGAIDRKLYV 326
A+A G + GQ + ++ + L + N S G +T P A KL++
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSA--HKLFI 263
Query: 327 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
G L + + Q+++L FGP++ L D TG KG+ F ++ + A + LNG
Sbjct: 264 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG- 322
Query: 387 LEIVGRTLKVSSVTDHVGTQDTAAKS 412
+++ + L V + VG ++ S
Sbjct: 323 MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 118 (46.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 547
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
>RGD|1597319 [details] [associations]
symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
finger domain binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
Length = 475
Score = 138 (53.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 49/206 (23%), Positives = 91/206 (44%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS---KAGKVRDV--RLIMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE + +FF+ + G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-PYGAIDRKLYV 326
A+A G + GQ + ++ + L + N S G +T P A KL++
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSA--HKLFI 263
Query: 327 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
G L + + Q+++L FGP++ L D TG KG+ F ++ + A + LNG
Sbjct: 264 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG- 322
Query: 387 LEIVGRTLKVSSVTDHVGTQDTAAKS 412
+++ + L V + VG ++ S
Sbjct: 323 MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 118 (46.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 547
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
>UNIPROTKB|E2R0G3 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
Length = 471
Score = 137 (53.3 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 48/201 (23%), Positives = 90/201 (44%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS---KAGKVRDV--RLIMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE + +FF+ + G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-PYGAIDRKLYV 326
A+A G + GQ + ++ + L + N S G +T P A KL++
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSA--HKLFI 263
Query: 327 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
G L + + Q+++L FGP++ L D TG KG+ F ++ + A + LNG
Sbjct: 264 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG- 322
Query: 387 LEIVGRTLKVSSVTDHVGTQD 407
+++ + L V + VG ++
Sbjct: 323 MQLGDKKLLVQRAS--VGAKN 341
Score = 118 (46.6 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 547
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 368 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 427
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 428 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 468
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 207 (77.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 60/213 (28%), Positives = 111/213 (52%)
Query: 204 KEKKEVVEPEADPERDQR------TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRN 257
K++K EP A ++ + +F + TE +++ F + G++ R++ +R+
Sbjct: 254 KKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERD 312
Query: 258 SRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV-----KPSEAE----KNLVQSNT 307
+ RS+G GY+EF + A A+ + G+ + + +P+ + K Q+
Sbjct: 313 TGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRA 372
Query: 308 SAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 367
+ G T P D L+VGNL F+ E + ++F P G V ++LP D+E+G+ KGFG+
Sbjct: 373 RSFGDQTSPES--DT-LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGY 429
Query: 368 VQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400
VQ++ ++ A+ A + L G EI GR +++ T
Sbjct: 430 VQYSSVDEARKAYNELQGA-EIDGRPIRLDFST 461
Score = 142 (55.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 33/114 (28%), Positives = 58/114 (50%)
Query: 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 353
KP++++K + +A + L+VGNL +N+TE L + FE FG + ++
Sbjct: 249 KPADSKKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARI 307
Query: 354 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 407
+ +TG+ +GFG+V+F A A A+ + EI GR + + T +D
Sbjct: 308 MTERDTGRSRGFGYVEFTNAADAAKAYEAMK-EHEIDGRKINLDYATGRPANKD 360
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 34/107 (31%), Positives = 49/107 (45%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
+ PE D T+F +P A E V+E F G V +RL D S R KG GY+++ V
Sbjct: 378 QTSPESD--TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSV 435
Query: 273 MSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG 318
A L G + G+P+ + S ++N GG G +G
Sbjct: 436 DEARKAYNELQGAEIDGRPIRLDFSTP-----RANNGGGGGGRGGFG 477
Score = 37 (18.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 543 RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKP 582
R GF Y+++ S + A A + R I F P
Sbjct: 423 RPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTP 462
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 148 (57.2 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 105 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 164
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 165 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 218
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 219 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 267
Score = 131 (51.2 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 89 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 148
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 149 ALEQMNSVM-LGGRNIKV 165
Score = 106 (42.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 424 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 478
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F A +A++ RWFA R++++ ++
Sbjct: 479 FVEFSMASETHKAIQALNGRWFAGRKVVAEVY 510
Score = 72 (30.4 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 173 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 232
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 233 GFIEYEKAQSSQDAVSSMNLFDLG 256
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 206 (77.6 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 64/211 (30%), Positives = 99/211 (46%)
Query: 204 KEKKEVVEPEADPERDQR--TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+E++E + E + T+F + + + E F G V R+I DR S RS
Sbjct: 220 EEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRS 279
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG-A 319
KG GY++F A G + G+ + V S + SN +AG A YG
Sbjct: 280 KGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKAT--NSNDAAGARAK-KYGDT 336
Query: 320 IDRK---LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
+ + L+VGNL F+ E + F V+ ++LP + E+G+ KGFG+V F +E A
Sbjct: 337 VSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDA 396
Query: 377 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 407
K+A LNG+ I GR ++ T +D
Sbjct: 397 KSAFEQLNGQ-SINGRNCRLDYSTPRPPRED 426
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 148 (57.2 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 113 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 172
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 173 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 226
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 227 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 275
Score = 131 (51.2 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 97 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 156
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 157 ALEQMNSVM-LGGRNIKV 173
Score = 105 (42.0 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 432 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 486
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F A +A++ RWFA R++++ ++
Sbjct: 487 FVEFSVASETHKAIQALNGRWFAGRKVVAEVY 518
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 181 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 240
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 241 GFIEYEKAQSSQDAVSSMNLFDLG 264
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 148 (57.2 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 126 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 185
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 186 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 239
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 240 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 288
Score = 131 (51.2 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 110 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 169
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 170 ALEQMNSVM-LGGRNIKV 186
Score = 105 (42.0 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 445 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 499
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F A +A++ RWFA R++++ ++
Sbjct: 500 FVEFSIASETHKAIQALNGRWFAGRKVVAEVY 531
Score = 72 (30.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 194 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 253
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 254 GFIEYEKAQSSQDAVSSMNLFDLG 277
>UNIPROTKB|Q24JZ8 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
Length = 475
Score = 138 (53.6 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 49/206 (23%), Positives = 91/206 (44%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS---KAGKVRDV--RLIMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE + +FF+ + G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-PYGAIDRKLYV 326
A+A G + GQ + ++ + L + N S G +T P A KL++
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSA--HKLFI 263
Query: 327 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
G L + + Q+++L FGP++ L D TG KG+ F ++ + A + LNG
Sbjct: 264 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG- 322
Query: 387 LEIVGRTLKVSSVTDHVGTQDTAAKS 412
+++ + L V + VG ++ S
Sbjct: 323 MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 114 (45.2 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 31/101 (30%), Positives = 46/101 (45%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 547
G P+E L L NM P D + EI DV +EC KYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECGKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 148 (57.2 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 142 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 201
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 202 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 255
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 256 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 304
Score = 131 (51.2 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 126 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 185
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 186 ALEQMNSVM-LGGRNIKV 202
Score = 105 (42.0 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 461 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 515
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F A +A++ RWFA R++++ ++
Sbjct: 516 FVEFSIASETHKAIQALNGRWFAGRKVVAEVY 547
Score = 72 (30.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 210 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 269
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 270 GFIEYEKAQSSQDAVSSMNLFDLG 293
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 148 (57.2 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 143 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 202
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 203 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 256
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 257 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 305
Score = 131 (51.2 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 127 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 186
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 187 ALEQMNSVM-LGGRNIKV 203
Score = 105 (42.0 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 462 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 516
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F A +A++ RWFA R++++ ++
Sbjct: 517 FVEFSIASETHKAIQALNGRWFAGRKVVAEVY 548
Score = 72 (30.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 211 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 270
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 271 GFIEYEKAQSSQDAVSSMNLFDLG 294
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 162 (62.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 54/192 (28%), Positives = 92/192 (47%)
Query: 211 EPEADPERDQRTVF--AYQMPLKATERDVYEFFSKAGKVRDVRLI-MDRNSRRSKGVGYI 267
E AD E F A +P+ +D F GK +D + I + + SK I
Sbjct: 3 ENSADIENRPVAAFRPAVSVPMPVLPQDGEVFVGPGGK-KDAQKIGLGLSKLSSKRKDDI 61
Query: 268 EFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVG 327
+ ++ ++I Q+LL Q + ++ + + S I ++YVG
Sbjct: 62 QMAKKYAMDISIK---QILLRQQKQQQENQQRQQMYSQALS-----------IMSRIYVG 107
Query: 328 NLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ F + E LR+ F+PFGP++ + + D TG K F FV++ E A AQ ++NG++
Sbjct: 108 SISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQM 167
Query: 388 EIVGRTLKVSSV 399
+ GR LKV+S+
Sbjct: 168 -LGGRNLKVNSM 178
Score = 120 (47.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 51/224 (22%), Positives = 96/224 (42%)
Query: 241 FSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI--ALSGQLLLGQPVMVKPSEA 298
F G ++ + + D + K ++E Y+V + +++GQ+L G+ + V
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVE-YEVPEAALLAQESMNGQMLGGRNLKVNSMMF 180
Query: 299 EKNLVQSNTSAGGTATGPYGAIDRK---LYVGNLHFNMTETQLRKLFEPFGPVELVQLPL 355
++ + N +K +YV ++H +++ET L+ +FE FG + QL
Sbjct: 181 QEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLAR 240
Query: 356 DIETGQC-KGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS-VT--DHVGTQDTAAK 411
TG+ +GFG+++F L A + +N ++ G+ L+V VT D + A+
Sbjct: 241 -APTGRGHRGFGYLEFNNLTSQSEAIAGMN-MFDLGGQYLRVGKCVTPPDALTYLQPASV 298
Query: 412 SAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPA 455
SA A+ A+ A + GS +PA
Sbjct: 299 SAIPASVSVACAAITAKVMAAEAAAGSSPKTPSESGGSRAASPA 342
Score = 91 (37.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-RSAGFV--YLRFES 554
S ++L+NM P D D ++G++ EEC KYG V + + S+G V ++++
Sbjct: 657 SNVIVLRNMVTPQ-----DIDEFLEGEIREECGKYGNVIDVVIANFASSGLVKIFVKYSD 711
Query: 555 TEAAASAQRAMHMRWFARRLISA 577
+ A+ A+ R+F + A
Sbjct: 712 SMQVDRAKAALDGRFFGGNTVKA 734
Score = 37 (18.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 546 GFVYLRFESTEAAASAQRAMHM 567
GF YL F + + + A M+M
Sbjct: 249 GFGYLEFNNLTSQSEAIAGMNM 270
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 148 (57.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 147 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 206
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 207 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 260
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 261 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 309
Score = 131 (51.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 131 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 190
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 191 ALEQMNSVM-LGGRNIKV 207
Score = 102 (41.0 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 466 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 520
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F A +A++ RWF R++++ ++
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVAEVY 552
Score = 72 (30.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 215 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 274
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 275 GFIEYEKAQSSQDAVSSMNLFDLG 298
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 148 (57.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 147 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 206
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 207 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 260
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 261 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 309
Score = 131 (51.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 131 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 190
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 191 ALEQMNSVM-LGGRNIKV 207
Score = 102 (41.0 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 466 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 520
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F A +A++ RWF R++++ ++
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVAEVY 552
Score = 72 (30.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 215 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 274
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 275 GFIEYEKAQSSQDAVSSMNLFDLG 298
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 151 (58.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 59/248 (23%), Positives = 118/248 (47%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 106 EDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 165
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 166 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHPDLSDDDIKSVFEAFGRIKSC 219
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVTDHVGTQDTAA 410
L D TG+ KG+GF+++ + + A+ A S++N ++ G+ L+V +VT + A
Sbjct: 220 SLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMN-LFDLGGQYLRVGKAVTPPMPLLTPAT 278
Query: 411 KS----AXXXXXXXXXLALNAQSRALLMQKLDRT----GIATSIAGS--LGVAPAVNGSA 460
A + AQ L Q +RT ++AG+ LG A G +
Sbjct: 279 PGGLPPAAAVAAAAATAKITAQMAWNLSQPENRTEDFLNCLEAVAGASILGAMTAGTGLS 338
Query: 461 VNQ--QAI 466
+ Q QA+
Sbjct: 339 MPQLPQAV 346
Score = 130 (50.8 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 90 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQL 149
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 150 ALEQMNSVM-LGGRNIKV 166
Score = 98 (39.6 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 548
S ++L+NM P D D +++G+V EEC K+G V + + + G +
Sbjct: 440 STVMVLRNMVGPE-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEVIVKI 494
Query: 549 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
++ F + A +A++ RWF R++I+ ++
Sbjct: 495 FVEFSAASEMNKAIQALNNRWFGGRKVIAEVY 526
Score = 69 (29.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F G+++ L D + + KG
Sbjct: 174 QAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGY 233
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 234 GFIEYDKAQSAQDAVSSMNLFDLG 257
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 148 (57.2 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 41/170 (24%), Positives = 92/170 (54%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 113 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 172
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +PS N+ Q+ A A +R +YV ++H ++++ ++ +FE FG ++
Sbjct: 173 VGRPS----NIGQAQPIIDQLAEEAR-AFNR-IYVASVHQDLSDDDIKSVFEAFGKIKSC 226
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L D TG+ KG+GF+++ + + ++ A S++N ++ G+ L+V +VT
Sbjct: 227 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVGKAVT 275
Score = 131 (51.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 97 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 156
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 157 ALEQMNSVM-LGGRNIKV 173
Score = 101 (40.6 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH--IYVDKRS----AGFVYLR 551
S ++L+NM DP D D +++G+V EEC K+G V IY +K+ A +
Sbjct: 432 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 486
Query: 552 FESTEAAASAQRA---MHMRWFA-RRLISAIF 579
F A+ +A ++ RWFA R++++ ++
Sbjct: 487 FVEFSVASETHKAIQDLNGRWFAGRKVVAEVY 518
Score = 72 (30.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + +++ A+ R ++ + ++ D+ F GK++ L D + + KG
Sbjct: 181 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 240
Query: 265 GYIEFYDVMSVPMAIALSGQLLLG 288
G+IE+ S A++ LG
Sbjct: 241 GFIEYEKAQSSQDAVSSMNLFDLG 264
>UNIPROTKB|K7ENG2 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC008735 TIGRFAMs:TIGR01642 HGNC:HGNC:23156
Ensembl:ENST00000590551 Uniprot:K7ENG2
Length = 307
Score = 124 (48.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTAT 314
+ K ++EF V A+A G + GQ + ++ + L + N S G +T
Sbjct: 29 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVST 88
Query: 315 G-PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 373
P A KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 89 VVPDSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146
Query: 374 EHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 407
A + LNG +++ + L V + VG ++
Sbjct: 147 NVTDQAIAGLNG-MQLGDKKLLVQRAS--VGAKN 177
Score = 118 (46.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 547
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 204 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 263
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 264 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 304
Score = 50 (22.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 355 LDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402
L ++ Q K F F++F ++ A A +G + G++LK+ D+
Sbjct: 23 LAVQINQDKNFAFLEFRSVDETTQAM-AFDGII-FQGQSLKIRRPHDY 68
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 196 (74.1 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 57/182 (31%), Positives = 90/182 (49%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
KK+ E +P T+F ++ + + + F G V R+I +R + RS+G G
Sbjct: 157 KKQKNEETEEPA----TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYG 212
Query: 266 YIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKL 324
Y++F + AI + G+ + G+P+ S ++ +N A P D L
Sbjct: 213 YVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP--AGNNDRAKKFGDTPSEPSDT-L 269
Query: 325 YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 384
++GNL FN + +LF G V V++P ET Q KGFG+VQF+ +E AK A AL
Sbjct: 270 FLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQ 329
Query: 385 GK 386
G+
Sbjct: 330 GE 331
>FB|FBgn0005411 [details] [associations]
symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
Uniprot:Q24562
Length = 416
Score = 125 (49.1 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 42/181 (23%), Positives = 77/181 (42%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK----AGKVRDVRL-IMDRNSRRSKGVGYIEFYDV 272
R R ++ +P TE ++ EFF++ G + ++ K ++EF +
Sbjct: 90 RQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSI 149
Query: 273 MSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQSNTSAGGTATGPYGAID-------RKL 324
A+A G L GQ + ++ P + + ++T A A G I K+
Sbjct: 150 DETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHKI 209
Query: 325 YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 384
++G L + + Q+++L FG + L D TG KG+ F ++ L + + LN
Sbjct: 210 FIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLN 269
Query: 385 G 385
G
Sbjct: 270 G 270
Score = 118 (46.6 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 30/101 (29%), Positives = 50/101 (49%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 547
G P+E L L NM P D + +I D++EEC+KYG V+ + + + G
Sbjct: 314 GPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGK 373
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
V++ F S AQ+A+ R F+ R++ + P+ Y +
Sbjct: 374 VFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRR 414
Score = 74 (31.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F +P + V E GK+R L+ D + SKG + E+ D+ +IA L
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGL 268
Query: 282 SGQLLLGQPVMV-KPSEAEKNLVQS-NTS 308
+G L + ++V + S KN + NT+
Sbjct: 269 NGMQLGDKKLIVQRASVGAKNAQNAANTT 297
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 185 (70.2 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 54/202 (26%), Positives = 93/202 (46%)
Query: 208 EVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYI 267
+V P+ +F +P + + F AG V V +I D+ + RS+G G++
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 268 EFYDVMSVPMAIA-LSGQLLLGQPVMVK----PSEAEKNLVQSNTSAGGTATGPYGA--- 319
V V A +G L G+P+ V P + E + S+ G++ YG
Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGG 197
Query: 320 ----IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375
++YVGNL + + + L LF G V ++ D ++G+ KGFGFV + +
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257
Query: 376 AKAAQSALNGKLEIVGRTLKVS 397
+ A +L+G ++ GR ++VS
Sbjct: 258 VQNAIKSLDGA-DLDGRQIRVS 278
Score = 162 (62.1 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
D KL+VGNL FN+ QL +LFE G VE+V++ D TG+ +GFGFV + + +AA
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 381 SALNGKLEIVGRTLKVSS 398
NG E+ GR L+V++
Sbjct: 150 QQFNG-YELDGRPLRVNA 166
Score = 38 (18.4 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 525 VEEECSKYGRV--KHIYVDK---RSAGFVYLRFESTEAAASAQRAM 565
+E S+ G+V + D+ RS GF ++ ++S++ +A +++
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 191 (72.3 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 62/194 (31%), Positives = 94/194 (48%)
Query: 213 EADP---ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ DP ++ +F + + +Y+ FS G + ++ D N + SKG G++ F
Sbjct: 115 QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHF 173
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKP--SEAEKNLVQSNTSAGGTATGPYGAIDRKLYV 326
+ + AI AL+G LL GQ + V P S E++ T A T LYV
Sbjct: 174 EEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT----------NLYV 223
Query: 327 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA-KAAQ----S 381
N++ T+ Q ++LF FGP+ L D + G+ KGFGFV + + E A KA + S
Sbjct: 224 KNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDS 282
Query: 382 ALNGKLEIVGRTLK 395
LNG+ VGR K
Sbjct: 283 ELNGEKLYVGRAQK 296
Score = 139 (54.0 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 47/182 (25%), Positives = 83/182 (45%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E +++ + +E +Y+ FS G V +R+ D ++ S G Y+ F D +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 277 MAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
AI L+ + G+ + S+ + +L + + +++ NLH ++
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG--------------NIFIKNLHPDIDN 139
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395
L F FG + ++ D E G+ KGFGFV F + AK A ALNG L + G+ +
Sbjct: 140 KALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGML-LNGQEIY 197
Query: 396 VS 397
V+
Sbjct: 198 VA 199
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 44/172 (25%), Positives = 81/172 (47%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ 289
+ T+ E F+K G + L D + + KG G++ + A+ AL+ L G+
Sbjct: 229 ETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGE 287
Query: 290 PVMV----KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPF 345
+ V K +E L + + Y ++ L+V NL ++ + +L + F P+
Sbjct: 288 KLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVKNLDDSVDDEKLEEEFAPY 345
Query: 346 GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397
G + ++ + E G+ KGFGFV F+ E A A + N ++ + G+ L V+
Sbjct: 346 GTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAITEKNQQI-VAGKPLYVA 395
Score = 39 (18.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 526 EEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMH 566
+E +K+G + ++K + GF ++ +E E A A A++
Sbjct: 236 QELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 132 (51.5 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 37/170 (21%), Positives = 86/170 (50%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG-QPVM 292
E + + F+ G ++ + + D + + KG ++E+ + +A+ ++LG + +
Sbjct: 99 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 158
Query: 293 V-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
V +P + Q Y ++YV ++H ++++ ++ +FE FG ++
Sbjct: 159 VGRPGSIGQ--AQPIIEQLAEEARAYN----RIYVASIHPDLSDDDIKSVFEAFGKIKSC 212
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVT 400
L + TG+ KGFGF+++ + + + A S++N ++ G+ L+V +VT
Sbjct: 213 MLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMN-LFDLGGQYLRVGKAVT 261
Score = 131 (51.2 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 83 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 142
Query: 379 AQSALNGKLEIVGRTLKV 396
A +N + + GR +KV
Sbjct: 143 ALEQMNSVM-LGGRNIKV 159
Score = 104 (41.7 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF------ 547
I S S ++L+NM P D D +++G+V EEC KYG V + + + G
Sbjct: 414 IQSKSTVMVLRNMVGPE-----DIDDDLEGEVMEECGKYGAVNRVIIYQERQGEEDDAEI 468
Query: 548 ---VYLRFESTEAAASAQRAMHMRWFA-RRLISAIF 579
+++ F A +A++ RWFA R++++ ++
Sbjct: 469 IVKIFVEFSDAGEMNKAIQALNNRWFAGRKVVAELY 504
Score = 70 (29.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/94 (22%), Positives = 42/94 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ + ++E A+ R ++ + ++ D+ F GK++ L + + + KG
Sbjct: 167 QAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGF 226
Query: 265 GYIEF------YDVMSVPMAIALSGQLL-LGQPV 291
G+IE+ D +S L GQ L +G+ V
Sbjct: 227 GFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKAV 260
Score = 39 (18.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 8/49 (16%), Positives = 25/49 (51%)
Query: 524 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHM 567
D++ +G++K + + + GF ++ +E +++ A +M++
Sbjct: 198 DIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNL 246
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 184 (69.8 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 50/205 (24%), Positives = 102/205 (49%)
Query: 205 EKKEVVEPEADPER---DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
E +E VE E + ++ ++ +P T ++ + F +AG V DV+++ D+ + RS
Sbjct: 97 EGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRS 156
Query: 262 KGVGYIEFYDVMSVPMAIAL-SGQLLLGQPVMVK----PSEAEKNLVQSNTSAGGTATGP 316
+G G++ + A+ + + + G+ V V P E ++++ +
Sbjct: 157 RGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRS--- 213
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y K+Y GNL +N+T L+ F V ++ + TG+ +GFGF+ F E+
Sbjct: 214 YVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENV 273
Query: 377 KAAQSALNGKLEIVGRTLKVSSVTD 401
++A + +NG +E+ GR L+++ ++
Sbjct: 274 QSALATMNG-VEVEGRALRLNLASE 297
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 177 (67.4 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 51/185 (27%), Positives = 96/185 (51%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
++ +RD RT+ A +P K T+ ++ E F A ++R ++ ++ + SKG+ YIEF
Sbjct: 39 DSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTE 93
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
+ G + G+ + + + EK Q+ GG + + L + NL +
Sbjct: 94 ADAEKTLEEKQGTEIDGRSISLYYT-GEKG--QNQDFRGGK-NSTWSGESKTLVLSNLAY 149
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
+ TE L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K EI G
Sbjct: 150 SATEETLQEVFEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEG 204
Query: 392 RTLKV 396
R +++
Sbjct: 205 RAIRL 209
Score = 47 (21.6 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G + EE K G ++ I D+ S GF ++ F S E A
Sbjct: 218 PNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDA 277
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 278 KAAKEAM 284
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 182 (69.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 52/185 (28%), Positives = 95/185 (51%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
++ ERD RT+ A +P K T+ ++ E F A ++R ++ ++ + SKG+ YIEF
Sbjct: 385 DSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGK-SKGIAYIEFKTE 439
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
G + G+ + + + EK Q+ GG + + L + NL +
Sbjct: 440 ADAEKTFEEKQGTEIDGRSISLYYT-GEKG--QNQDYRGGK-NSTWSGESKTLVLSNLSY 495
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
+ TE L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K EI G
Sbjct: 496 SATEETLQEVFEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEG 550
Query: 392 RTLKV 396
R +++
Sbjct: 551 RAIRL 555
Score = 52 (23.4 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G V+ I D+ S GF ++ F S E A
Sbjct: 564 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 623
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 624 KAAKEAM 630
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 182 (69.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 52/185 (28%), Positives = 95/185 (51%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
++ ERD RT+ A +P K T+ ++ E F A ++R ++ ++ + SKG+ YIEF
Sbjct: 386 DSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGK-SKGIAYIEFKTE 440
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
G + G+ + + + EK Q+ GG + + L + NL +
Sbjct: 441 ADAEKTFEEKQGTEIDGRSISLYYT-GEKG--QNQDYRGGK-NSTWSGESKTLVLSNLSY 496
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
+ TE L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K EI G
Sbjct: 497 SATEETLQEVFEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEG 551
Query: 392 RTLKV 396
R +++
Sbjct: 552 RAIRL 556
Score = 52 (23.4 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G V+ I D+ S GF ++ F S E A
Sbjct: 565 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 624
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 625 KAAKEAM 631
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 182 (69.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 52/185 (28%), Positives = 95/185 (51%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
++ ERD RT+ A +P K T+ ++ E F A ++R ++ ++ + SKG+ YIEF
Sbjct: 387 DSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGK-SKGIAYIEFKTE 441
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
G + G+ + + + EK Q+ GG + + L + NL +
Sbjct: 442 ADAEKTFEEKQGTEIDGRSISLYYT-GEKG--QNQDYRGGK-NSTWSGESKTLVLSNLSY 497
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
+ TE L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K EI G
Sbjct: 498 SATEETLQEVFEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEG 552
Query: 392 RTLKV 396
R +++
Sbjct: 553 RAIRL 557
Score = 52 (23.4 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G V+ I D+ S GF ++ F S E A
Sbjct: 566 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 625
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 626 KAAKEAM 632
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 175 (66.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 53/185 (28%), Positives = 88/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 94
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L++L
Sbjct: 95 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKEL 146
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 147 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 204
Query: 402 HVGTQ 406
V Q
Sbjct: 205 KVERQ 209
Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 54/191 (28%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + E F K G V+++ D S +S
Sbjct: 109 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKS 166
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 167 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 226
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 227 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 282
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 283 TKAVTEMNGRI 293
Score = 55 (24.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 246 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 305
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 306 RKEERQA 312
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 160 (61.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 47/148 (31%), Positives = 74/148 (50%)
Query: 262 KGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS----------NTSAG 310
K ++E V A+AL G +L G PV V+ P++ +L + N A
Sbjct: 302 KKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAV 361
Query: 311 GTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFV 368
G ++G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F
Sbjct: 362 GLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFC 421
Query: 369 QFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ A +ALNG +++ +TL V
Sbjct: 422 VYQDPSVTDIACAALNG-IKMGDKTLTV 448
Score = 72 (30.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/102 (21%), Positives = 48/102 (47%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS--------AG 546
G+P++ + L + D + EI D+ +E K+G + ++ + + + G
Sbjct: 484 GTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVG 543
Query: 547 FVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 588
V+L + + ++ A+ M+ R F + A++ PED A+
Sbjct: 544 KVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYY-PEDKYAQ 584
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 185 (70.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 74/269 (27%), Positives = 121/269 (44%)
Query: 212 PEADPERDQRTV--FAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
P P +D + F Q+P E+D+ F + GK+ ++ ++ DR + KG ++ +
Sbjct: 43 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 102
Query: 270 YDVMSVPMA-IALSGQLLL---GQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 325
+ S A AL Q L +P+ VKP+++E G + + DRKL+
Sbjct: 103 CERESALKAQSALHEQKTLPGMNRPIQVKPADSESR-------GGSSCLRQPPSQDRKLF 155
Query: 326 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
VG L+ +E +R+LFE FG +E + L G KG FV+++ A+AA +AL+G
Sbjct: 156 VGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHG 214
Query: 386 KLEIVGRT--LKVSSV-TDHVGT----QDTAAKSAXXXXXXXXXLALNAQSRALLMQKLD 438
+ G + L V TD T Q A + A A ++AL+ Q+
Sbjct: 215 SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ-- 272
Query: 439 RTGIATSIA--GSLGVAPAVNGSAVNQQA 465
+ S+A G L A + + Q A
Sbjct: 273 -AALMASVAQGGYLNPMAAFAAAQMQQMA 300
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 185 (70.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 74/269 (27%), Positives = 121/269 (44%)
Query: 212 PEADPERDQRTV--FAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
P P +D + F Q+P E+D+ F + GK+ ++ ++ DR + KG ++ +
Sbjct: 43 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 102
Query: 270 YDVMSVPMA-IALSGQLLL---GQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 325
+ S A AL Q L +P+ VKP+++E G + + DRKL+
Sbjct: 103 CERESALKAQSALHEQKTLPGMNRPIQVKPADSESR-------GGSSCLRQPPSQDRKLF 155
Query: 326 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
VG L+ +E +R+LFE FG +E + L G KG FV+++ A+AA +AL+G
Sbjct: 156 VGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHG 214
Query: 386 KLEIVGRT--LKVSSV-TDHVGT----QDTAAKSAXXXXXXXXXLALNAQSRALLMQKLD 438
+ G + L V TD T Q A + A A ++AL+ Q+
Sbjct: 215 SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ-- 272
Query: 439 RTGIATSIA--GSLGVAPAVNGSAVNQQA 465
+ S+A G L A + + Q A
Sbjct: 273 -AALMASVAQGGYLNPMAAFAAAQMQQMA 300
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 185 (70.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 74/269 (27%), Positives = 121/269 (44%)
Query: 212 PEADPERDQRTV--FAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
P P +D + F Q+P E+D+ F + GK+ ++ ++ DR + KG ++ +
Sbjct: 43 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 102
Query: 270 YDVMSVPMA-IALSGQLLL---GQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 325
+ S A AL Q L +P+ VKP+++E G + + DRKL+
Sbjct: 103 CERESALKAQSALHEQKTLPGMNRPIQVKPADSESR-------GGSSCLRQPPSQDRKLF 155
Query: 326 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
VG L+ +E +R+LFE FG +E + L G KG FV+++ A+AA +AL+G
Sbjct: 156 VGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHG 214
Query: 386 KLEIVGRT--LKVSSV-TDHVGT----QDTAAKSAXXXXXXXXXLALNAQSRALLMQKLD 438
+ G + L V TD T Q A + A A ++AL+ Q+
Sbjct: 215 SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ-- 272
Query: 439 RTGIATSIA--GSLGVAPAVNGSAVNQQA 465
+ S+A G L A + + Q A
Sbjct: 273 -AALMASVAQGGYLNPMAAFAAAQMQQMA 300
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 175 (66.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 53/185 (28%), Positives = 88/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 54/191 (28%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + E F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 144 (55.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 108 (43.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 37 (18.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 525 VEEECSKYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMH 566
++E K+G + V D+ +S GF ++ FE E A A M+
Sbjct: 207 LKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 175 (66.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 53/185 (28%), Positives = 88/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 54/191 (28%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + E F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 144 (55.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 108 (43.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 37 (18.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 525 VEEECSKYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMH 566
++E K+G + V D+ +S GF ++ FE E A A M+
Sbjct: 207 LKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 179 (68.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 52/185 (28%), Positives = 95/185 (51%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
++ +RD RT+ A +P K T+ ++ E F A ++R ++ ++ + SKG+ YIEF
Sbjct: 390 DSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTE 444
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
G + G+ + + + EK QS GG + + L + NL +
Sbjct: 445 ADAEKTFEEKQGTEIDGRSISLYYT-GEKG--QSQDYRGGK-NSTWSGESKTLVLSNLSY 500
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
+ TE L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K EI G
Sbjct: 501 SATEETLQEVFEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEG 555
Query: 392 RTLKV 396
R +++
Sbjct: 556 RAIRL 560
Score = 52 (23.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G V+ I D+ S GF ++ F S E A
Sbjct: 569 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 628
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 629 KAAKEAM 635
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 179 (68.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 52/185 (28%), Positives = 96/185 (51%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
++ +RD RT+ A +P K T+ ++ E F A ++R ++ ++ + SKG+ YIEF
Sbjct: 395 DSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTE 449
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
+ G + G+ + + + EK QS GG + + L + NL +
Sbjct: 450 ADAEKTLEEKQGTEIDGRSISLYYT-GEKG--QSQDHRGGK-NSTWSGESKTLVLSNLSY 505
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
+ TE L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K EI G
Sbjct: 506 SATEETLQEVFEK---ATHIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEG 560
Query: 392 RTLKV 396
R +++
Sbjct: 561 RAIRL 565
Score = 51 (23.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G ++ I D+ S GF ++ F S E A
Sbjct: 574 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDA 633
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 634 KAAKEAM 640
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 173 (66.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 113
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 114 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 165
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 166 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 223
Query: 402 HVGTQ 406
V Q
Sbjct: 224 KVERQ 228
Score = 156 (60.0 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 128 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 185
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 186 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 245
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 246 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 301
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 302 TKAVTEMNGRI 312
Score = 55 (24.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 265 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 324
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 325 RKEERQA 331
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 180 (68.4 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 51/185 (27%), Positives = 90/185 (48%)
Query: 206 KKEVVEPEADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIM-------DRN 257
K E E P+ R ++ + T+ D+ F + D + D++
Sbjct: 54 KSENGGTETAPQKRSDYGIWIGNLAFSVTKEDIRRFLTTNCSFTDATITRVHLPKPSDKS 113
Query: 258 SR-RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGP 316
SR ++KG Y++F ++ A+ LS QL+ G+ V++K ++ K + + G A
Sbjct: 114 SRAQNKGFAYVDFSTPKALEEALGLSEQLVSGRRVLIKDAKNYKGRPEKSQDDGNNAPTS 173
Query: 317 YGAI-DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375
G ++L+VGNL F+ T+ L + F G V V + ++G+CKG+ +V+F LE
Sbjct: 174 SGRPPSKRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEFEDLEA 233
Query: 376 AKAAQ 380
AK A+
Sbjct: 234 AKTAE 238
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 173 (66.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 156 (60.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 148 (57.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 48/179 (26%), Positives = 81/179 (45%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + ATE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 106 (42.4 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH + TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 173 (66.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 156 (60.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 144 (55.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 108 (43.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 173 (66.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 156 (60.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 144 (55.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 108 (43.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 173 (66.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 156 (60.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 144 (55.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 108 (43.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 173 (66.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 156 (60.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 144 (55.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 108 (43.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 173 (66.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 156 (60.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 144 (55.7 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 108 (43.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 180 (68.4 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 53/193 (27%), Positives = 96/193 (49%)
Query: 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEF 269
E E T+F + + T+ + + F G V+ ++++DR + RSKG G++ F
Sbjct: 144 EKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Query: 270 YDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTS----AGGTATGPYGAIDRKL 324
D A+ ++GQ +P+ + P+ A KN + + G G + +
Sbjct: 204 ADENEQMRAMTEMNGQYCSTRPMRIGPA-ANKNALPMQPAMYQNTQGANAGDNDPNNTTI 262
Query: 325 YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 384
+VG L N+T+ +L+ +F FG + V++P G K GFVQ+A A+ A S LN
Sbjct: 263 FVGGLDANVTDDELKSIFGQFGELLHVKIP----PG--KRCGFVQYANKASAEHALSVLN 316
Query: 385 GKLEIVGRTLKVS 397
G ++ G+++++S
Sbjct: 317 GT-QLGGQSIRLS 328
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 43/155 (27%), Positives = 75/155 (48%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293
E + F+++G+ ++I ++ + +S+G G+IEF SV + Q G P+
Sbjct: 73 ENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVS-HSVAERVL---QTYNGAPMPS 128
Query: 294 KPSEAEKNLVQSNTSAGGTAT-GPYGAIDRKLYVGNLHFNMTETQLRKLFEP-FGPVELV 351
N Q+ T GP D ++VG+L +T+ L F+ +G V+
Sbjct: 129 TEQTFRLNWAQAGAGEKRFQTEGP----DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGA 184
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
++ LD TG+ KG+GFV+FA A + +NG+
Sbjct: 185 KVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 182 (69.1 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 50/186 (26%), Positives = 90/186 (48%)
Query: 207 KEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGY 266
K+ P +T+FA + DV FF +AG+V DVR +R+ +G G+
Sbjct: 283 KQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGH 342
Query: 267 IEFYDVMSVPMAIALSGQLLLGQPVM--VKPSEAEKNLVQSNT-SAGGTATGPYGAIDRK 323
+EF A+ G+ LLG+ + + E+ + T +G +G G ++K
Sbjct: 343 VEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKK 402
Query: 324 LYVGNLHFNMTETQ----LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
++V +++E LR+ F G ++ V +P+D +TG KG +++F++ + KA
Sbjct: 403 IFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE-KAL 461
Query: 380 QSALNG 385
+ LNG
Sbjct: 462 E--LNG 465
>UNIPROTKB|G3V2B4 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780 EMBL:AL135998
HGNC:HGNC:20155 ChiTaRS:RBM23 ProteinModelPortal:G3V2B4 SMR:G3V2B4
Ensembl:ENST00000555722 ArrayExpress:G3V2B4 Bgee:G3V2B4
Uniprot:G3V2B4
Length = 51
Score = 159 (61.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ Y+EF ++ SVP
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 51
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 135 (52.6 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 38/101 (37%), Positives = 50/101 (49%)
Query: 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 353
K E +N QS S GG P K+ + NL F T ++RKLF +G ++ V++
Sbjct: 771 KRRELPENSKQSIKSNGGQPNKP----SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRI 826
Query: 354 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394
P G +GFGFV+F E AK A AL G GR L
Sbjct: 827 PKKPNGGH-RGFGFVEFLTEEEAKNAMEAL-GNSHFYGRHL 865
Score = 111 (44.1 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
+++V NL ++ E L K+F FG + + +P+D ++ + KG F+ + E+A A +
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 383 LNGKLEIVGRTLKV 396
++GK+ GR + V
Sbjct: 422 MDGKV-FQGRLIHV 434
Score = 98 (39.6 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + E D+ + FSK GK+ ++ + +D +S++SKG+ +I + + A+ +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 282 SGQLLLGQPVMVKPSEA 298
G++ G+ + V P +A
Sbjct: 423 DGKVFQGRLIHVLPGKA 439
Score = 81 (33.6 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLL 286
Q+P T++ E F K G V D ++I + +S+ G+I F S A++L+G +
Sbjct: 10 QLPKHLTDKRFKEHFEKFGTVTDAKII--KKDGKSRLFGFIGFSTEQSAKNALSLNGTFI 67
Query: 287 LGQPVMVKP----SEAEKNLVQSNTSAGGTA 313
++V+ SE +N S S G ++
Sbjct: 68 DTSKIVVETATVASETTENRPWSKYSIGSSS 98
Score = 64 (27.6 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 28/99 (28%), Positives = 43/99 (43%)
Query: 296 SEAEKNLVQSNTSAGGTATGPYGAIDRK---LYVGNLHFNMT-ETQLRKL--FEPFGPVE 349
S +K V+S T T T D +Y+ NL++ T ET + K + + V
Sbjct: 649 SSNDKKEVESTTKTAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVN 708
Query: 350 LVQL--PLD-IETGQCKGFGFVQFAQLEHAKAAQSALNG 385
+ P + E C GFGF++F+ + A LNG
Sbjct: 709 IATKANPKNPSERLPC-GFGFIEFSSKQGAYECIKKLNG 746
Score = 54 (24.1 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 497 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS----AGFVYLRF 552
PS +++KN+ P F+ I+ ++ + + YG ++ + + K+ GF ++ F
Sbjct: 793 PSSKIIIKNL--------P-FESTIK-EIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEF 842
Query: 553 ESTEAAASAQRAM-HMRWFARRLI 575
+ E A +A A+ + ++ R L+
Sbjct: 843 LTEEEAKNAMEALGNSHFYGRHLV 866
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 173 (66.0 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ S G + ++ D N SKG G++ F + AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG-PYGAIDRKLYVGNLHFNMTETQLRK 340
+G LL G+ V V ++ K + G A P +Y+ N +M + +L+
Sbjct: 159 NGMLLNGRKVFVGQFKSRK---EREAELGARAKEFP------NVYIKNFGEDMDDERLKD 209
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400
LF FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 210 LFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQ 267
Query: 401 DHVGTQ 406
V Q
Sbjct: 268 KKVERQ 273
Score = 157 (60.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 239 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV---- 293
+ F K G V+++ D S +SKG G++ F A+ ++G+ L G+ + V
Sbjct: 209 DLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
Query: 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 353
K E + L ++ Y ++ LYV NL + + +LRK F PFG + ++
Sbjct: 268 KKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERLRKAFSPFGTITSAKV 325
Query: 354 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
+ E G+ KGFGFV F+ E A A + +NG++
Sbjct: 326 MM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 118 (46.6 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 44/165 (26%), Positives = 72/165 (43%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG + +R+ D + S Y+ F A+ ++ ++ G+PV
Sbjct: 23 TEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPV 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S ++V NL ++ L FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NIFVKNLDKSINNKALYDTVSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ D E G KG+GFV F E A+ A +NG L + GR + V
Sbjct: 129 NVVCD-ENGS-KGYGFVHFETHEAAERAIKKMNGML-LNGRKVFV 170
Score = 52 (23.4 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 543 RSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFMKPEDYEA 587
RS GF ++ F S E A A M+ R A + L A+ + E+ +A
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 178 (67.7 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 61
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG--AIDRKLYVGNLHFNMTETQLRK 340
L G+ + KP + G GP + K++VG + N ET+LR+
Sbjct: 62 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 121
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 122 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 175
Score = 125 (49.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +D + + +F +P E ++ E+F K G V +V +I D +R +G G+I F D
Sbjct: 95 PRSDNSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 153
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG 315
SV A+ + ++G+ V VK +E + Q+ G + G
Sbjct: 154 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 197
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 184 (69.8 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 64/215 (29%), Positives = 96/215 (44%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR---S 261
E++E E E + T+F + TE + E FSK G V+ + +N S
Sbjct: 714 EEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLS 773
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSE-AEKNLVQSNTSAGGTATGPYGA 319
G G++E+ A+ L G ++ G + V+ SE A K V T A P
Sbjct: 774 MGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAV---TLARKKQV-PRKQ 829
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQLEHAKA 378
K+ V N+ F ++R+LF FG ++ V+LP + TG +GFGFV F + AK
Sbjct: 830 TTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 413
A +AL + GR L + V Q K+A
Sbjct: 890 AFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTA 924
Score = 164 (62.8 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 56/193 (29%), Positives = 93/193 (48%)
Query: 229 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK-GVGYIEFYDVMSVPMAIALSGQLLL 287
P TE++V EF + V +R++ RN+ +K G +++F + V A+ + + +
Sbjct: 302 PFNVTEKNVMEFLAPLKPVA-IRIV--RNAHGNKTGYIFVDFSNEEEVKQALKCNREYMG 358
Query: 288 GQPVMV---KPSEAEKNLVQSNTSAG-GTATGPYG-----AIDRKLYVGNLHFNMTETQL 338
G+ + V K K ++ T + G G A +L+V NL + TE L
Sbjct: 359 GRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDL 418
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV-S 397
KLF +GP+ + P+D T + KGF F+ F EHA A S ++G++ GR L V
Sbjct: 419 EKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQV-FQGRMLHVLP 477
Query: 398 SVTDHVGTQDTAA 410
S ++D +A
Sbjct: 478 STIKKEASEDASA 490
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 158 (60.7 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 43/182 (23%), Positives = 91/182 (50%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
+T++ + TE + + FS+ G ++ ++IMD + + ++EF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 281 -LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQL 338
++G+ ++G+ V V + + Q ++ T + D ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398
+ F PFG + ++ D+ TG+ KG+GFV F A+ A + G+ + GR ++ +
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQIRTNW 181
Query: 399 VT 400
T
Sbjct: 182 AT 183
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 178 (67.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLRK 340
L G+ + KP + G GP + K++VG + N ET+LR+
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELRE 131
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 185
Score = 126 (49.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 34/112 (30%), Positives = 54/112 (48%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +D + + +F +P E ++ E+F K G V +V +I D +R +G G+I F D
Sbjct: 105 PRSDSSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAE--KNLV--QSNTSAGGTATGPYGA 319
SV A+ + ++G+ V VK +E KN Q S G+ P A
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAA 215
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 178 (67.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLRK 340
L G+ + KP + G GP + K++VG + N ET+LR+
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELRE 131
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 185
Score = 126 (49.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 34/112 (30%), Positives = 54/112 (48%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +D + + +F +P E ++ E+F K G V +V +I D +R +G G+I F D
Sbjct: 105 PRSDSSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAE--KNLV--QSNTSAGGTATGPYGA 319
SV A+ + ++G+ V VK +E KN Q S G+ P A
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAA 215
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 178 (67.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG--AIDRKLYVGNLHFNMTETQLRK 340
L G+ + KP + G GP + K++VG + N ET+LR+
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 185
Score = 125 (49.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +D + + +F +P E ++ E+F K G V +V +I D +R +G G+I F D
Sbjct: 105 PRSDNSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG 315
SV A+ + ++G+ V VK +E + Q+ G + G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 207
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 178 (67.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG--AIDRKLYVGNLHFNMTETQLRK 340
L G+ + KP + G GP + K++VG + N ET+LR+
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 185
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +D + + +F +P E ++ E+F K G V +V +I D +R +G G+I F D
Sbjct: 105 PRSDNSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG 315
SV A+ + ++G+ V VK +E + Q+ G + G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 207
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 178 (67.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG--AIDRKLYVGNLHFNMTETQLRK 340
L G+ + KP + G GP + K++VG + N ET+LR+
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 185
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +D + + +F +P E ++ E+F K G V +V +I D +R +G G+I F D
Sbjct: 105 PRSDNSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG 315
SV A+ + ++G+ V VK +E + Q+ G + G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 207
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 171 (65.3 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 54/180 (30%), Positives = 91/180 (50%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
R RT+ A + TE ++ E F A ++R ++ ++ R SKG+ YIEF
Sbjct: 248 RAARTLLAKNLSFNITEDELKEVFEDAVEIR----LVSQDGR-SKGIAYIEFKSEADAEK 302
Query: 278 AIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ G + G+ V + + EK Q T T +G + L + NL ++ TE
Sbjct: 303 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGE----SKTLVLSNLSYSATEE 357
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
L+++FE +++ Q P G+ KG+ F++FA E AK A ++ N K+EI GRT+++
Sbjct: 358 TLQEVFEKATFIKVPQNP----HGKSKGYAFIEFASFEDAKEALNSCN-KMEIEGRTIRL 412
Score = 52 (23.4 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G V+ I D+ S GF ++ F S E A
Sbjct: 421 PNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDA 480
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 481 KTAKEAM 487
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 157 (60.3 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 144 (55.7 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 51/248 (20%), Positives = 111/248 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
V+ + + E + F+ G ++ + + D +++ KG ++E+ +A+ +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 282 SGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRK 340
+G L+ G+ + V +PS N+ Q+ ++YV ++H +++E ++
Sbjct: 192 NGALMGGRNIKVGRPS----NMPQAQQVIDEVQEEAKSF--NRIYVASIHPDLSEEDIKS 245
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ---LEHAKAAQSA--LNGKLEIVGRTLK 395
+FE FGP+ +L KG+GF+++A ++ A A+ + L G+L VGR++
Sbjct: 246 VFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSIT 305
Query: 396 VSSVTDHVGTQDT--AAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGI--ATSIAGSLG 451
+ T T A + AL+A + ++ T + A ++ +G
Sbjct: 306 PPNALACPTTNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVMAAGAVVTKVG 365
Query: 452 VAPAVNGS 459
P V+ +
Sbjct: 366 AMPVVSAA 373
Score = 133 (51.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
++YVG++ F + E +R F PFGP++ + + D T + KGF FV++ E A+ A
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 383 LNGKLEIVGRTLKV 396
+NG L + GR +KV
Sbjct: 191 MNGAL-MGGRNIKV 203
Score = 82 (33.9 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV---------DKRSAGFV 548
S ++L+NM P D D +Q +++EECSK+G V + + D A +
Sbjct: 536 SRVIILRNMVGPE-----DVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEII 590
Query: 549 YLRFESTEAAASAQR---AMHMRWFA-RRLISAIF 579
F A A A R A+ R+F RR+++ ++
Sbjct: 591 VKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELY 625
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 157 (60.3 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 56/177 (31%), Positives = 84/177 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + ++ +D + SKG G++ F + AI +
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGF-SKGYGFVHFETEEAAQNAIQKV 180
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNL--HFNMTETQLR 339
+G LL G+ V V + Q N G TA +YV N H+N ET L
Sbjct: 181 NGMLLAGKKVFVGKFQPR---AQRNRELGETAKQ-----FTNVYVKNFGDHYNK-ET-LE 230
Query: 340 KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
KLF FG + ++ + +E G+ KGFGFV FA E A+ A AL+ I G LK+
Sbjct: 231 KLFAKFGNITSCEV-MTVE-GKSKGFGFVAFANPEEAETAVQALHDST-IEGTDLKL 284
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 44/166 (26%), Positives = 77/166 (46%)
Query: 239 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV---- 293
+ F+K G + ++ +SKG G++ F + A+ AL + G + +
Sbjct: 231 KLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
Query: 294 --KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
K SE L + + Y ++ LYV NL + + L+K FE +G +
Sbjct: 289 AQKKSERHAELKKKHEQHKAERMQKYQGVN--LYVKNLDETVDDDGLKKQFESYGNITSA 346
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397
++ D E G+ KGFGFV F + E A +A + +N K+ + + L V+
Sbjct: 347 KVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKM-VCSKPLYVA 390
Score = 122 (48.0 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 44/164 (26%), Positives = 76/164 (46%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVM 292
E ++E FS AG V +R+ D +R S G Y+ F A+ ++ + L G+P+
Sbjct: 45 ESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMR 104
Query: 293 VKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQ 352
+ S+ + + +S AG +++ NL + + F FG + +
Sbjct: 105 IMWSQRDPAMRRSG--AGN------------IFIKNLDKVIDNKSIYDTFSLFGNILSCK 150
Query: 353 LPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ +D E G KG+GFV F E A+ A +NG L + G+ + V
Sbjct: 151 VAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGML-LAGKKVFV 192
Score = 68 (29.0 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKH--IYVDK--RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+ D + D ++++ YG + + D+ RS GF ++ FE E A SA M+ +
Sbjct: 323 NLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Query: 571 ARR-LISAIFMKPEDYEAKFKS 591
+ L AI + ED A+ S
Sbjct: 383 CSKPLYVAIAQRKEDRRAQLAS 404
Score = 55 (24.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 525 VEEECSKYGRVKH---IYVDKRSAGFVYLRFESTEAAASAQRAMH 566
+E+ +K+G + + V+ +S GF ++ F + E A +A +A+H
Sbjct: 229 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALH 273
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 182 (69.1 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 56/174 (32%), Positives = 85/174 (48%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
E + ERDQ VF +P + + D+ FSK GKV ++++D S G G++ F
Sbjct: 101 ELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN-SYGYGFVRFSSP 159
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
AI L G + ++ + S NL N+ Y + L++ L +
Sbjct: 160 QESAAAIEELDGYQYQNKKLLCRLSNLYTNL---NSK--------YPS--NNLFIKPLPY 206
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
++T+ QLRKLFEPFG + ++ LD GQ K GFV+F+ A A A+NG
Sbjct: 207 DVTDDQLRKLFEPFGKIIECKVMLD-HNGQSKFAGFVRFSSELDASKAIDAMNG 259
Score = 129 (50.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 293 VKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQ 352
+ P A + + SN S GG T D L+V +L + ++ L +LF FG ++ V+
Sbjct: 746 LNPLSASSSSITSN-SGGGKHTN-----DTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVR 799
Query: 353 LPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ D +TG+ KG+GFV+F Q + A Q +NG I + LKV
Sbjct: 800 VITDKDTGENKGYGFVKFYQTDEALKCQKEMNG-FRIGSKFLKV 842
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 176 (67.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q T++ + K +E ++E +AG V V + DR + +G G++EF
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S EKN+ GA ++VGNL +
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNM-------------DVGA---NIFVGNLDPEV 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + ++ ++ D+++G KGF F+ FA E + A A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQF-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 AITVS 175
Score = 128 (50.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
D +YVG L ++E+ L +L GPV V +P D T +GFGFV+F E A A
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
LN +++ G+ +KV+ + H D A
Sbjct: 72 KILN-MIKLYGKPIKVNKASAHEKNMDVGA 100
Score = 61 (26.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 514 DPDFDLEIQGDVEEECSKYGRVKHIY--VDK-RSAGFVYLRFESTEAAASAQRAMHMRWF 570
DP+ D ++ D +V I VD S GF ++ F S EA+ +A AM+ ++
Sbjct: 108 DPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL 167
Query: 571 ARRLISAIFMKPED 584
R I+ + D
Sbjct: 168 CNRAITVSYAFKRD 181
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 176 (67.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q T++ + K +E ++E +AG V V + DR + +G G++EF
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S EKN+ GA ++VGNL +
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNM-------------DVGA---NIFVGNLDPEV 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + ++ ++ D+++G KGF F+ FA E + A A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQF-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 AITVS 175
Score = 128 (50.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
D +YVG L ++E+ L +L GPV V +P D T +GFGFV+F E A A
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
LN +++ G+ +KV+ + H D A
Sbjct: 72 KILN-MIKLYGKPIKVNKASAHEKNMDVGA 100
Score = 61 (26.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 514 DPDFDLEIQGDVEEECSKYGRVKHIY--VDK-RSAGFVYLRFESTEAAASAQRAMHMRWF 570
DP+ D ++ D +V I VD S GF ++ F S EA+ +A AM+ ++
Sbjct: 108 DPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL 167
Query: 571 ARRLISAIFMKPED 584
R I+ + D
Sbjct: 168 CNRAITVSYAFKRD 181
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 182 (69.1 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 58/215 (26%), Positives = 94/215 (43%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR--- 260
+E++E E E + T+F + TE + FSK G ++ + +N
Sbjct: 705 EEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLL 764
Query: 261 SKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
S G G++E+ A+ L G + G + V+ SE ++T P
Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQV---PKKQ 821
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQLEHAKA 378
K+ V N+ F + ++R+LF FG ++ V+LP + TG +GFGFV F + AK
Sbjct: 822 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 881
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 413
A +AL + GR L + V Q K+A
Sbjct: 882 AFNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTA 916
Score = 159 (61.0 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 55/179 (30%), Positives = 87/179 (48%)
Query: 229 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS---VPMAIALSGQL 285
P TE++V EF + V +R++ RN+ +K GY+ F D+ S V A+ +
Sbjct: 301 PFNVTEKNVIEFLAPLKPVA-IRIV--RNAHGNK-TGYV-FVDLSSEEEVKKALKCNRDY 355
Query: 286 LLGQPVMV---KPSEAEKNLVQSNTSAGGTATGPYG-----AIDRKLYVGNLHFNMTETQ 337
+ G+ + V K + + +S T G G A +L+V NL + +E
Sbjct: 356 MGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEED 415
Query: 338 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
L KLF +GP+ + P+D T + KGF FV F EHA A + ++G++ GR L V
Sbjct: 416 LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQGRMLHV 473
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 177 (67.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 51/185 (27%), Positives = 96/185 (51%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
++ +RD RT+ A +P K T+ ++ E F A ++R ++ ++ + SKG+ YIEF
Sbjct: 398 DSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTE 452
Query: 273 MSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHF 331
+ G + G+ + + + EK Q+ GG + + L + NL +
Sbjct: 453 ADAEKTLEEKQGTEIDGRSISLYYT-GEKG--QNQDFRGGK-NSTWSGESKTLVLSNLAY 508
Query: 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
+ TE L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K EI G
Sbjct: 509 SATEETLQEVFEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEG 563
Query: 392 RTLKV 396
R +++
Sbjct: 564 RAIRL 568
Score = 47 (21.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G + EE K G ++ I D+ S GF ++ F S E A
Sbjct: 577 PNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDA 636
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 637 KAAKEAM 643
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 168 (64.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 51/185 (27%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F AI +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G L + V V ++ ++ Q+ A +Y+ NL +M + +L+ L
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDR-QAELGARAKEF-------TNVYIKNLGEDMDDERLQDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK ++ G+ + V
Sbjct: 211 FSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGK-DLNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 149 (57.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 46/173 (26%), Positives = 79/173 (45%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 273
+DP +++ + TE +YE FS AG + +R+ DR +RRS G + F +
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLE 63
Query: 274 SVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN 332
A+ ++ ++ G+PV + S+ + +L +S ++V NL +
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFVKNLDRS 109
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
+ L F FG + ++ D E G KG+GFV F E A+ A +NG
Sbjct: 110 IDSKTLYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEEAERAIEKMNG 160
Score = 139 (54.0 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 48/167 (28%), Positives = 79/167 (47%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVM 292
ER + + FS+ G V+++ D S +SKG G++ F A+ ++G+ L G+ +
Sbjct: 205 ER-LQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIY 262
Query: 293 V--------KPSEAEKNLVQSNTSAGGTATGPYGAIDR----KLYVGNLHFNMTETQLRK 340
V + +E + Q P R LYV NL + + +LRK
Sbjct: 263 VGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRK 322
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
F PFG + ++ + E G+ KGFGFV F+ E A A + +NG++
Sbjct: 323 EFSPFGTITSAKVTM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 367
Score = 114 (45.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D T + G+ V F QLE A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 55 (24.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 525 VEEECSKYGRVKHIYVDK---RSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + V RS GF ++ F S E A A M+ R A + L A+
Sbjct: 320 LRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 380 RKEERQA 386
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 183 (69.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 62/193 (32%), Positives = 101/193 (52%)
Query: 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRL-IMDRNSRRSKGVGYIEFYDVMSVPMA 278
+ T+F P A E + + FSK G++ D+R + N+ R Y++F ++ A
Sbjct: 904 ETTLFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRR--FCYLQFKTSVAAHSA 961
Query: 279 IALSGQLL-LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQ 337
+AL G + G ++VK S+ + Q GP R+++V N++++ +E
Sbjct: 962 LALDGSAVGNGLHLVVKISDPSRK--QDRN-------GPIYE-GREIHVSNVNWSASEDD 1011
Query: 338 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397
L++LF FG VELV+LP ++ G KGFG+V F+ E A AA A++ + E GR L V
Sbjct: 1012 LKELFSRFGTVELVRLPRKVDGGS-KGFGYVVFSSKEEATAAL-AMHEQ-EFRGRPLHVK 1068
Query: 398 SVTDHVGTQDTAA 410
V+ G + AA
Sbjct: 1069 -VSAPQGAKRIAA 1080
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 112 (44.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+K++VG L+ TE ++R+ F FG +E ++LP+D ++ + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVK 209
Score = 105 (42.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G+I F D SV
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVE 125
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGG 311
+ L G+ + K + A K GG
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KLYVGNL++ + + L + F +G V+ Q+ +D TG+ +GFGFV+ + A+AA +
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 383 LNGKLEIVGRTLKVS 397
LNGK E+ GR L V+
Sbjct: 64 LNGK-EMDGRNLMVN 77
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 55/182 (30%), Positives = 85/182 (46%)
Query: 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 279
+R +F + +P + D+ E F + G V +V +I ++ + ++G ++ AI
Sbjct: 94 KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGK-NRGFAFVTMASGEEAQAAI 152
Query: 280 ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLR 339
+ + + S A + + S + G KLYV NL + T LR
Sbjct: 153 DKFDTFQVSGRI-ISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLR 211
Query: 340 KLFEP--FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR--TLK 395
+LF F PV + D E G+ G+GFV FA E A+ A + LNGK EI+GR TLK
Sbjct: 212 ELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEAENAITKLNGK-EIMGRPITLK 269
Query: 396 VS 397
S
Sbjct: 270 FS 271
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 171 (65.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 54/180 (30%), Positives = 91/180 (50%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
R RT+ A + TE ++ E F A ++R ++ ++ R SKG+ YIEF
Sbjct: 394 RAARTLLAKNLSFNITEDELKEVFEDAVEIR----LVSQDGR-SKGIAYIEFKSEADAEK 448
Query: 278 AIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ G + G+ V + + EK Q T T +G + L + NL ++ TE
Sbjct: 449 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGE----SKTLVLSNLSYSATEE 503
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
L+++FE +++ Q P G+ KG+ F++FA E AK A ++ N K+EI GRT+++
Sbjct: 504 TLQEVFEKATFIKVPQNP----HGKSKGYAFIEFASFEDAKEALNSCN-KMEIEGRTIRL 558
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G V+ I D+ S GF ++ F S E A
Sbjct: 567 PNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDA 626
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 627 KAAKEAM 633
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 171 (65.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 54/180 (30%), Positives = 91/180 (50%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
R RT+ A + TE ++ E F A ++R ++ ++ R SKG+ YIEF
Sbjct: 395 RAARTLLAKNLSFNITEDELKEVFEDAVEIR----LVSQDGR-SKGIAYIEFKSEADAEK 449
Query: 278 AIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ G + G+ V + + EK Q T T +G + L + NL ++ TE
Sbjct: 450 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGE----SKTLVLSNLSYSATEE 504
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
L+++FE +++ Q P G+ KG+ F++FA E AK A ++ N K+EI GRT+++
Sbjct: 505 TLQEVFEKATFIKVPQNP----HGKSKGYAFIEFASFEDAKEALNSCN-KMEIEGRTIRL 559
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 509 PAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLRFESTEAA 558
P + P L ++G D EE K G V+ I D+ S GF ++ F S E A
Sbjct: 568 PNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDA 627
Query: 559 ASAQRAM 565
+A+ AM
Sbjct: 628 KAAKEAM 634
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 116 (45.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+K++VG L+ TE ++R+ F FG +E ++LP+D +T + +GF F+ F + E K
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVK 203
Score = 99 (39.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D +F + +++D+ ++F+K G+V D + M N+ RSKG G+I F D SV
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVE 119
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGG 311
+ L G+ + K + A K GG
Sbjct: 120 KVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 154
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 173 (66.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ S G + ++ D N SKG G++ F + AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG-PYGAIDRKLYVGNLHFNMTETQLRK 340
+G LL G+ V V ++ K + G A P +Y+ N +M + +L+
Sbjct: 159 NGMLLNGRKVFVGQFKSRK---EREAELGARAKEFP------NVYIKNFGEDMDDERLKD 209
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400
LF FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 210 LFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQ 267
Query: 401 DHVGTQ 406
V Q
Sbjct: 268 KKVERQ 273
Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/143 (30%), Positives = 70/143 (48%)
Query: 239 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV---- 293
+ F K G V+++ D S +SKG G++ F A+ ++G+ L G+ + V
Sbjct: 209 DLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
Query: 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 353
K E + L ++ Y ++ LYV NL + + +LRK F PFG + ++
Sbjct: 268 KKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERLRKAFSPFGTITSAKV 325
Query: 354 PLDIETGQCKGFGFVQFAQLEHA 376
+ E G+ KGFGFV F+ E A
Sbjct: 326 MM--EGGRSKGFGFVCFSSPEEA 346
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 44/165 (26%), Positives = 72/165 (43%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG + +R+ D + S Y+ F A+ ++ ++ G+PV
Sbjct: 23 TEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPV 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S ++V NL ++ L FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NIFVKNLDKSINNKALYDTVSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ D E G KG+GFV F E A+ A +NG L + GR + V
Sbjct: 129 NVVCD-ENGS-KGYGFVHFETHEAAERAIKKMNGML-LNGRKVFV 170
Score = 104 (41.7 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + +V F +H K A+ AL
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNF---QHTKDAEHAL 69
Query: 384 NG-KLEIV-GRTLKV 396
+ +++ G+ +++
Sbjct: 70 DTMNFDVIKGKPVRI 84
Score = 50 (22.7 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 530 SKYGRVK--HIYVDKR-SAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + ++ D+ S G+ ++ FE+ EAA A + M+ M R++ F ++
Sbjct: 120 SAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 167 (63.8 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 57/201 (28%), Positives = 95/201 (47%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+EK ++P ++ R V+ +P T + + + G V V+++ D+ S RS+
Sbjct: 62 EEKPAALDPSSEAAR---RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 264 VGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KP--SEAEKNLVQSNTSAGGTATGP 316
G+ V + L+G + G+ + V KP S + +++QS SA P
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSA--FVDSP 176
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y K+YVGNL +T+ L LF G V ++ T + GFGFV F+ E
Sbjct: 177 Y-----KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Query: 377 KAAQSALNGKLEIVGRTLKVS 397
+AA ALN L + G+ ++V+
Sbjct: 232 EAAIVALNNSL-LEGQKIRVN 251
Score = 138 (53.6 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 305 SNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKG 364
+ T A P R++Y+GN+ +T QL KL E G VE VQ+ D +G+ +
Sbjct: 59 TETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 365 FGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
FGF +E A A LNG + GR +KV+ +T+
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNT-VEGREIKVN-ITE 153
Score = 37 (18.1 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 534 RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566
+V + +S GF ++ F S E +A A++
Sbjct: 207 KVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
>TAIR|locus:2115280 [details] [associations]
symbol:ATU2AF65A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0042742 "defense
response to bacterium" evidence=IEP] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 GO:GO:0042742 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161589 GO:GO:0000398 EMBL:Z99708 HSSP:P26368 EMBL:AF462805
EMBL:AY080711 EMBL:AY143980 EMBL:BT000965 EMBL:BX827587
IPI:IPI00524736 IPI:IPI00525889 IPI:IPI00534734 PIR:C85433
RefSeq:NP_195387.1 RefSeq:NP_849509.1 RefSeq:NP_974695.1
UniGene:At.21204 ProteinModelPortal:O23212 SMR:O23212 IntAct:O23212
STRING:O23212 PaxDb:O23212 PRIDE:O23212 EnsemblPlants:AT4G36690.1
GeneID:829822 KEGG:ath:AT4G36690 TAIR:At4g36690 eggNOG:NOG298004
HOGENOM:HOG000180745 InParanoid:O23212 KO:K12837 OMA:EDIRMEA
PhylomeDB:O23212 ProtClustDB:CLSN2915914 Genevestigator:O23212
TIGRFAMs:TIGR01642 Uniprot:O23212
Length = 573
Score = 154 (59.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 46/148 (31%), Positives = 74/148 (50%)
Query: 262 KGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS----------NTSAG 310
K ++E V A++L G + G PV V+ PS+ +L + N +A
Sbjct: 286 KKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAV 345
Query: 311 GTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFV 368
G G G ++ +++VG L + TE+Q+R+L E FG ++ L D ETG KG+ F
Sbjct: 346 GLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFC 405
Query: 369 QFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ L A +ALNG +++ +TL V
Sbjct: 406 VYQDLSVTDIACAALNG-IKMGDKTLTV 432
Score = 67 (28.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 511 METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS------AGF--VYLRFESTEAAASAQ 562
+ D ++ +I D+ +E K+G + ++ + + S AG V+L++ T+ + A+
Sbjct: 485 LRDDEEYG-DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRAR 543
Query: 563 RAMHMRWFARRLISAIFMKPED 584
M+ R F + A++ PED
Sbjct: 544 FGMNGRKFGGNEVVAVYY-PED 564
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 110 (43.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+K++VG L+ TE ++R+ F FG +E ++LP+D + + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Score = 105 (42.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G+I F D SV
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGG 311
+ L G+ + K + A K GG
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 124 (48.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 291 VMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL 350
V P + + T+T A L++ L T LR +F FG ++
Sbjct: 68 VTTPPPPTTTTTTTTTMTQTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDS 127
Query: 351 VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDT 408
++ +D+ TG +GFGFV+F + A+ A +++NG ++ +TL V + +T
Sbjct: 128 CRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGA-KVENKTLLVRFANSDPNSNNT 184
Score = 122 (48.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
G LYV NL + ++ L +LF P G + V++ D T C+G+GFV+ L +
Sbjct: 378 GTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSY 437
Query: 378 AAQSALNGKLEIVGRTLKVS 397
+A +++NG +++ G+T+ VS
Sbjct: 438 SAINSING-VQVGGKTISVS 456
Score = 99 (39.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/87 (26%), Positives = 48/87 (55%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
+F +P T + FS G++ R+++D N+ S+G G+++F DV S AI ++
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTS 308
+G + + ++V+ + ++ N +N S
Sbjct: 161 NGAKVENKTLLVRFANSDPNSNNTNNS 187
Score = 94 (38.1 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/88 (26%), Positives = 49/88 (55%)
Query: 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS 274
D ++ VF +P++ + + E FS G+V + +L++D + S+G G + + D S
Sbjct: 213 DEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQS 272
Query: 275 VPMAI-ALSGQLLLG--QPVMVKPSEAE 299
A+ +L+G +L +P++V+ ++ E
Sbjct: 273 AINAVKSLNGFILQDPEKPLIVRFADNE 300
Score = 86 (35.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
I +++ L + QL +LF +G V +L +DI T +G G V++ + A A
Sbjct: 217 ISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINA 276
Query: 380 QSALNG 385
+LNG
Sbjct: 277 VKSLNG 282
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 174 (66.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 48/177 (27%), Positives = 88/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLRK 340
L G+ + KP + + T GP + K++VG + N ET+LR+
Sbjct: 72 PHTLDGRNIDPKPC-TPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELRE 130
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 131 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 184
Score = 126 (49.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 34/112 (30%), Positives = 54/112 (48%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +D + + +F +P E ++ E+F K G V +V +I D +R +G G+I F D
Sbjct: 104 PRSDSSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 162
Query: 272 VMSVPMAIALSGQLLLGQPVMVKPSEAE--KNLV--QSNTSAGGTATGPYGA 319
SV A+ + ++G+ V VK +E KN Q S G+ P A
Sbjct: 163 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAA 214
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 110 (43.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+K++VG L+ TE ++R+ F FG +E ++LP+D + + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Score = 105 (42.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G+I F D SV
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGG 311
+ L G+ + K + A K GG
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 178 (67.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 62/207 (29%), Positives = 98/207 (47%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K V E A R R +F +P AT + E FS++ ++ +++D +++SKG G
Sbjct: 24 KNNVQEDGATQPR--RELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYG 81
Query: 266 YIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK- 323
++ F DV A+ L+G G+ + V+ ++ +V G + A++RK
Sbjct: 82 FVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETV---GKSVPSAEALERKK 138
Query: 324 -------------LYVGNLHFNM-TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQ 369
L V NL +++ T L F FG V+ V LP + Q GFGFV
Sbjct: 139 QREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPK--KGSQLAGFGFVV 196
Query: 370 FAQLEHAKAAQSALNGKLEIVGRTLKV 396
++A+ A A+NGK E+ GRTL V
Sbjct: 197 LRGKKNAEKALEAVNGK-EVDGRTLAV 222
Score = 129 (50.5 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 37/120 (30%), Positives = 58/120 (48%)
Query: 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 353
KP+EA + +S++S R+L++ +L + T L + F ++ +
Sbjct: 9 KPTEASGAITESSSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVV 68
Query: 354 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD-HVGTQDTAAKS 412
+D +T Q KG+GFV FA +E AKAA LNG G+ +KV H +T KS
Sbjct: 69 VVDPKTKQSKGYGFVTFADVEDAKAALEELNGST-FEGKKIKVEYAQPRHRVVDETVGKS 127
Score = 123 (48.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 32/140 (22%), Positives = 64/140 (45%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+E++E E E + ER+ T+F +P + +Y+ F++ G +R R+++D + R +G
Sbjct: 292 EEEEEEEEEEKEDERNASTIFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRG 351
Query: 264 VGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN-LVQSNTSAGGTA--TGPYGAI 320
G++ F+ + G P+ + + +K +++ + A TG Y
Sbjct: 352 TGFVCFWKPEHAQACV--QGAPKQQDPLAAEKEKGKKGTIIKQSVLQNENADPTGRYTLD 409
Query: 321 DRKLYVGNLHFNMTETQLRK 340
R L + TQLR+
Sbjct: 410 GRVLQISRAVSKSRATQLRE 429
Score = 52 (23.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 356 DIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
D G+ +G+GF+++ HA LNG
Sbjct: 577 DSGAGRSRGYGFIEYYTHRHALMGLRWLNG 606
Score = 42 (19.8 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 524 DVEEECSKYGRVKHIYVDKRS---AGFVYLRFESTEAAASAQRAMH 566
D+ +G+VK++ + K+ AGF ++ + A A A++
Sbjct: 166 DLAAHFRSFGKVKYVTLPKKGSQLAGFGFVVLRGKKNAEKALEAVN 211
Score = 39 (18.8 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 328 NLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCK 363
+LHF++T +R + +L QL + G K
Sbjct: 487 SLHFSLTRLSIRNIPRHVTSKDLKQLAREAIVGFAK 522
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 179 (68.1 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 58/215 (26%), Positives = 95/215 (44%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR--- 260
+E++E E E + T+F + TE + FSK G V+ + +N
Sbjct: 673 EEEEEEEEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALL 732
Query: 261 SKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
S G G++E+ A+ L G ++ G + V+ SE +S ++G P
Sbjct: 733 SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE---RATKSALNSGRHKHSPRRQ 789
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQLEHAKA 378
D K++V F +L+++F FG ++ V+LP + TG +GFGFV F + AK
Sbjct: 790 TDTKIWVRVCPFQGDSRELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKR 849
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 413
A +AL + GR L + V K+A
Sbjct: 850 AFNALCHSTHLYGRRLVLEWADSEVSLPALRRKTA 884
Score = 141 (54.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 60/226 (26%), Positives = 102/226 (45%)
Query: 204 KEKKEVVEPEADPERDQRTVFAY--QMPLKAT--ERDVYEFFSKAGKVRDVRLIMDRNSR 259
+ + E V E E ++ FA Q +A +++V EF + V +R++ RN+
Sbjct: 234 ESEDEAVNCEEGSESEEEGSFAAPAQQDREAAPAKKNVMEFLAPLKPVA-IRIV--RNAH 290
Query: 260 RSK-GVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE----AEKNLVQSNTSAGGTAT 314
+K G +++F V A+ + + + G+ + V A+ L G
Sbjct: 291 GNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAKPWQGRTL 350
Query: 315 GPYG-----AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQ 369
G + A +L+V NL + +E L KLF +GPV + P+D T + KGF FV
Sbjct: 351 GEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVT 410
Query: 370 FAQLEHAKAAQSALNGKLEIVGRTLKV--SSVTDHVGTQDTAAKSA 413
F EHA A + ++G++ GR L V S++ A +S+
Sbjct: 411 FMFPEHAVKAYAEVDGQV-FQGRMLHVLPSTIKKEASEDANAPESS 455
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 153 (58.9 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 45/156 (28%), Positives = 76/156 (48%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ 289
+ TE +YE FS AG + +RL D+ +RRS G Y+ + + A+ L+ ++ G+
Sbjct: 12 EVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGR 71
Query: 290 PVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVE 349
PV + S+ + +L +S +++ NL + L +F FG +
Sbjct: 72 PVRIMWSQRDPSLRKSGVG--------------NVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 350 LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
++ D E G KG+GFV F + E A+ A A+NG
Sbjct: 118 SCKVACD-EKGP-KGYGFVHFQKQESAERAIDAMNG 151
Score = 111 (44.1 bits), Expect = 0.00042, P = 0.00042
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH +TE L + F P GP+ ++L D T + G+ +V + Q AK A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 384 NGKLEIVGRTLKV 396
N + I GR +++
Sbjct: 64 NFDV-IKGRPVRI 75
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 173 (66.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 53/183 (28%), Positives = 94/183 (51%)
Query: 220 QRTVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
+ T+F + T+ + E F VR +++ DR + RSKG G+++F D A
Sbjct: 175 EHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRA 234
Query: 279 IA-LSGQLLLGQPVMVKPSEAEKNL--VQSNTSAGGTAT-GPYGAIDRKLYVGNLHFNMT 334
+ ++G L +P+ + P+ +K + Q T AT G + ++VG L +
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVA 294
Query: 335 ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394
E LR++F P+G ELV + + + +C GFVQF A+ A S+LNG ++ G+++
Sbjct: 295 EEHLRQVFSPYG--ELVHVKI-VAGKRC---GFVQFGTRASAEQALSSLNGT-QLGGQSI 347
Query: 395 KVS 397
++S
Sbjct: 348 RLS 350
Score = 116 (45.9 bits), Expect = 0.00061, P = 0.00061
Identities = 45/202 (22%), Positives = 95/202 (47%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
P +P + R+++ + E + F G++ ++I ++ + +S+G G++EF
Sbjct: 76 PTGNPN-EVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRS 134
Query: 272 VMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLH 330
+ + +G L+ P+ E+N + N ++ G + + ++VG+L
Sbjct: 135 HAAAETILQTYNGTLM--------PN-VEQNF-RMNWASLGAGERRDDSAEHTIFVGDLA 184
Query: 331 FNMTETQLRKLFEP-FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
++T+ L++ F+ + V ++ D TG+ KG+GFV+FA A + +NG L
Sbjct: 185 ADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVL-C 243
Query: 390 VGRTLKVSSVTDH--VGTQDTA 409
R +++ + VGT A
Sbjct: 244 STRPMRIGPAANKKPVGTPQKA 265
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 176 (67.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 63/216 (29%), Positives = 99/216 (45%)
Query: 205 EKKEVVEPEADPERDQR------TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS 258
E+ + E D E D+ T+F + TE + E FSK G V+ + ++
Sbjct: 371 EETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDK 430
Query: 259 RR---SKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSE-AEKNLVQSNTSAGGTA 313
S G G++E+ S A+ L G ++ G + VK SE A + V+S+
Sbjct: 431 AGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVK 490
Query: 314 TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQ 372
K+ V N+ F T ++R+LF FG ++ V+LP + TG +GFGFV F
Sbjct: 491 KQKTS----KILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLT 546
Query: 373 LEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDT 408
+ AK A +AL + GR L V + T++T
Sbjct: 547 KQDAKKAFNALCHSTHLYGRRL----VLEWADTEET 578
Score = 127 (49.8 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 47/157 (29%), Positives = 74/157 (47%)
Query: 254 MDRNSRRSKGVGYIEFYDVMS---VPMAIALSGQLLLGQPVMVKPSE-AEKNLVQSNTSA 309
M +N++ K G+I F D+ S V A+ + + GQ V V E A K V + T
Sbjct: 1 MGKNTQ-GKSTGFI-FVDLKSEAEVQKALKRKKEYIGGQYVEVSRCENAPKETVTAKTD- 57
Query: 310 GGTATGPYGAIDR------------KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI 357
P+ + R +L+V NL F TE L K+F +GP+ + P+D
Sbjct: 58 ----DQPWQRMKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDR 113
Query: 358 ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394
T + KGF F+ + EHA A + ++G++ GR +
Sbjct: 114 LTKKPKGFAFITYMIPEHAVKAYAEMDGQV-FQGRMM 149
Score = 52 (23.4 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 522 QGDVEEECSKYGRVKHIYVDKR--------SAGFVYLRFESTEAAASAQRAM 565
+G ++E SK G VK + K+ S GF ++ ++ E+A A R +
Sbjct: 406 EGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRL 457
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 163 (62.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 44/182 (24%), Positives = 91/182 (50%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
+T++ + TE + + FS+ G ++ ++IMD + + ++EFY+ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 281 -LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQL 338
++G+ ++G+ V V + + Q ++ T + D ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398
+ F PFG + ++ D+ TG+ KG+GFV F A+ A + G+ + GR ++ +
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQIRTNW 181
Query: 399 VT 400
T
Sbjct: 182 AT 183
Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+D VF + + T D+ F+ G++ D R++ D + +SKG G++ F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 278 AIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATGPYGAIDRKLYVGNL 329
AI + GQ L G+ + KP A K+ +SNT + + +Y G +
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
+TE +R+ F PFG + ++I KG+ FV+F E A A ++NG I
Sbjct: 222 TSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 390 VGRTLK 395
G +K
Sbjct: 275 EGHVVK 280
Score = 49 (22.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 530 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 561
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 173 (66.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 51/183 (27%), Positives = 93/183 (50%)
Query: 222 TVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
++F + ++ ++E FS K V+ ++++D N+ RSKG G++ F D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 281 -LSGQLLLGQPVMVKPSEAEKN---LVQSNTSAGGTATGPYGAI-DRKLYVGNLHFNMTE 335
++G + + + P+ K Q GT T P G I + ++VG L ++T+
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR-TL 394
L++ F FG + V++P+ KG GFVQF +A+ A LNG ++G+ T+
Sbjct: 318 EDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGT--VIGKQTV 369
Query: 395 KVS 397
++S
Sbjct: 370 RLS 372
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 43/163 (26%), Positives = 82/163 (50%)
Query: 246 KVRDVRLIMDRNSRRSKGVGYIEF--YDVMSVPMAIALSGQLL--LGQPVMVKP---SEA 298
++ V++I ++N+ S+G G++EF +DV + +G + QP + S
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR-EFNGTTMPNTDQPFRLNWASFSTG 186
Query: 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLF-EPFGPVELVQLPLDI 357
EK L ++N GP D ++VG+L ++++ L + F E + V+ ++ LD
Sbjct: 187 EKRL-ENN--------GP----DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA 233
Query: 358 ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400
TG+ KG+GFV+F A + +NG ++ R +++ T
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNG-VKCSSRAMRIGPAT 275
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 152 (58.6 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 45/156 (28%), Positives = 76/156 (48%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ 289
+ TE +YE FS AG + +RL D+ +RRS G Y+ + + A+ ++ ++ G+
Sbjct: 12 EVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETMNFDVINGR 71
Query: 290 PVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVE 349
PV + S+ + +L +S +++ NL + L +F FG +
Sbjct: 72 PVRIMWSQRDPSLRKSGVG--------------NVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 350 LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
++ D E G KG+GFV F + E A+ A ALNG
Sbjct: 118 SCKVACD-EKGP-KGYGFVHFQKQESAERAIDALNG 151
Score = 110 (43.8 bits), Expect = 0.00055, P = 0.00055
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH +TE+ L + F P GP+ ++L D T + G+ +V + Q AK A +
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 384 NGKLEIVGRTLKV 396
N + I GR +++
Sbjct: 64 NFDV-INGRPVRI 75
>UNIPROTKB|Q5QP22 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL357374
UniGene:Hs.282901 HGNC:HGNC:15923 HOGENOM:HOG000236253
ChiTaRS:RBM39 IPI:IPI00644764 SMR:Q5QP22 STRING:Q5QP22
Ensembl:ENST00000434927 Uniprot:Q5QP22
Length = 193
Score = 152 (58.6 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 35/61 (57%), Positives = 40/61 (65%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 S 261
S
Sbjct: 193 S 193
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 111 (44.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 495 GSPSECLLLKNMF-DPAMETDPDFDLEIQGDVEEECSKYGRVKHI-----YVDKR--SAG 546
G +E L L NM + ++ D +++ EI DV +ECSKYG V+ + Y D G
Sbjct: 394 GRATEILCLMNMVTEDELKADDEYE-EILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVG 452
Query: 547 FVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 585
V++ F ST AQ A+ R FA R + + + Y
Sbjct: 453 KVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 491
Score = 110 (43.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 33/127 (25%), Positives = 59/127 (46%)
Query: 262 KGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK-PSEAE--KNLVQSNTSAGGTATGPYG 318
K +IEF + +A G +GQ + V+ P + + +N N+ +
Sbjct: 230 KNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMPVSTIVVDS 289
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
A K+++G L +TE Q+++L FGP++ L +D + G KG+ F ++
Sbjct: 290 A--NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQ 346
Query: 379 AQSALNG 385
A + LNG
Sbjct: 347 AIAGLNG 353
Score = 94 (38.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 34/131 (25%), Positives = 56/131 (42%)
Query: 290 PVMVKPSEAEKNLVQSNTSAGGTATGPYGAID-RKLYVGNLHFNMTETQLRKLFE----- 343
P+ K +A + + + + GP R+LYVGN+ F E + F
Sbjct: 151 PMEYKNMQAAGQVPRGSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHL 210
Query: 344 ------PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397
P P+ L Q+ LD K F F++F ++ A A +G + +G+ LKV
Sbjct: 211 CGLAQAPGNPILLCQINLD------KNFAFIEFRSIDETTAGM-AFDG-INFMGQQLKVR 262
Query: 398 SVTDHVGTQDT 408
D+ +Q+T
Sbjct: 263 RPRDYQPSQNT 273
Score = 67 (28.6 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 29/100 (29%), Positives = 46/100 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F +P TE V E G ++ L +D SKG + E+ D AIA L
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGN-SKGYAFAEYLDPTLTDQAIAGL 351
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 321
+G L + ++V+ + A N + NT+ +A+ G ID
Sbjct: 352 NGMQLGDKQLVVQLACA--NQQRHNTNLPNSASAIAG-ID 388
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 163 (62.4 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 44/182 (24%), Positives = 91/182 (50%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
+T++ + TE + + FS+ G ++ ++IMD + + ++EFY+ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 281 -LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQL 338
++G+ ++G+ V V + + Q ++ T + D ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398
+ F PFG + ++ D+ TG+ KG+GFV F A+ A + G+ + GR ++ +
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQIRTNW 181
Query: 399 VT 400
T
Sbjct: 182 AT 183
Score = 161 (61.7 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+D VF + + T D+ F+ G++ D R++ D + +SKG G++ F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 278 AIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATGPYGAIDRKLYVGNL 329
AI + GQ L G+ + KP A K+ +SNT + + +Y G +
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
+TE +R+ F PFG + ++I KG+ FV+F E A A ++NG I
Sbjct: 222 TSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 390 VGRTLK 395
G +K
Sbjct: 275 EGHVVK 280
Score = 49 (22.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 530 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 561
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 172 (65.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 72/262 (27%), Positives = 117/262 (44%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D +F Q+P E+D+ F + GK+ ++ +I D+ + KG ++ + S
Sbjct: 3 EADAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESAL 62
Query: 277 MAI-ALSGQLLL---GQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN 332
A AL Q L +P+ VKP+++E G DRKL+VG L
Sbjct: 63 KAQNALHEQKTLPGMNRPIQVKPADSE------------------GRGDRKLFVGMLGKQ 104
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
+++ +RK+FEPFG +E + L G KG FV++ A+AA SAL+G + G
Sbjct: 105 LSDADVRKMFEPFGSIEECTV-LRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGA 163
Query: 393 T----LKVSSVTDHVGT---QDTAAKSAXXXXXXXXXLALNA------QSRALLMQKLDR 439
+ +K + G Q A++ A NA Q +AL+ Q
Sbjct: 164 SSSLVVKFADTEKERGIRRMQQVASQLGVISPMSLHLGAYNAYTQALVQQQALVAQSAYL 223
Query: 440 TGIATSIAGSLGVAPAVNGSAV 461
+ +AT A + A+N S++
Sbjct: 224 SPVATVAAVQMQQLAALNPSSI 245
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
P A L GQ QP +V + +Q GP G +++ +L T+
Sbjct: 331 PAAYGLVGQPFPHQPTLVAQQPQQPQQLQQRE-------GPEGC---NIFIYHLPQEFTD 380
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395
+++ ++F PFG V ++ +D T Q K FGFV F A+AA A+NG +I + LK
Sbjct: 381 SEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNG-FQIGMKRLK 439
Query: 396 V 396
V
Sbjct: 440 V 440
Score = 41 (19.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 538 IYVDK---RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 584
++VD+ +S F ++ F++ +A +A +AM+ + + +P+D
Sbjct: 398 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 447
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 176 (67.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 56/173 (32%), Positives = 87/173 (50%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
+F +P ATE DV F + G V +V LI DR + +G ++++ AI AL
Sbjct: 124 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 183
Query: 282 SGQLLL-GQ--PVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQL 338
Q L G P+ V+ ++ E+ +GAI+ KL+V +L+ T ++
Sbjct: 184 HNQYTLPGAMGPIQVRYADGERER--------------HGAIEHKLFVASLNKQATAKEI 229
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
++F P+G VE V + D Q +G GFV+F+ E A AA SAL+G + G
Sbjct: 230 EEIFAPYGHVEDVYIMKD-GMRQSRGCGFVKFSSREPALAAMSALSGNYVMRG 281
Score = 104 (41.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL++G++ TE +R LFE G V V L D +TG+ +G FV++A E A+ A A
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 383 LNGKLEIVG 391
L+ + + G
Sbjct: 183 LHNQYTLPG 191
Score = 65 (27.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 524 DVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWFAR 572
++EE + YG V+ +Y+ K +S G +++F S E A +A A+ + R
Sbjct: 228 EIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMR 280
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 176 (67.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 56/173 (32%), Positives = 87/173 (50%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
+F +P ATE DV F + G V +V LI DR + +G ++++ AI AL
Sbjct: 124 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 183
Query: 282 SGQLLL-GQ--PVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQL 338
Q L G P+ V+ ++ E+ +GAI+ KL+V +L+ T ++
Sbjct: 184 HNQYTLPGAMGPIQVRYADGERER--------------HGAIEHKLFVASLNKQATAKEI 229
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
++F P+G VE V + D Q +G GFV+F+ E A AA SAL+G + G
Sbjct: 230 EEIFAPYGHVEDVYIMKD-GMRQSRGCGFVKFSSREPALAAMSALSGNYVMRG 281
Score = 104 (41.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL++G++ TE +R LFE G V V L D +TG+ +G FV++A E A+ A A
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 383 LNGKLEIVG 391
L+ + + G
Sbjct: 183 LHNQYTLPG 191
Score = 65 (27.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 524 DVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWFAR 572
++EE + YG V+ +Y+ K +S G +++F S E A +A A+ + R
Sbjct: 228 EIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMR 280
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 110 (43.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+K++VG L+ TE ++R+ F FG +E ++LP+D + + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Score = 105 (42.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G+I F D SV
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGG 311
+ L G+ + K + A K GG
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 165 (63.1 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ S G + ++ D N SKG G++ F + AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG-PYGAIDRKLYVGNLHFNMTETQLRK 340
+G LL G+ V V ++ K + G A P +Y+ N +M + +L+
Sbjct: 159 NGMLLNGRKVFVGQFKSRK---EREAELGARAKEFP------NVYIKNFGEDMDDERLKD 209
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
LF FGP V++ D E+G+ KGFGFV F + E A+ A +NGK
Sbjct: 210 LFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 44/165 (26%), Positives = 72/165 (43%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG + +R+ D + S Y+ F A+ ++ ++ G+PV
Sbjct: 23 TEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPV 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S ++V NL ++ L FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NIFVKNLDKSINNKALYDTVSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ D E G KG+GFV F E A+ A +NG L + GR + V
Sbjct: 129 NVVCD-ENGS-KGYGFVHFETHEAAERAIKKMNGML-LNGRKVFV 170
Score = 104 (41.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + +V F +H K A+ AL
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNF---QHTKDAEHAL 69
Query: 384 NG-KLEIV-GRTLKV 396
+ +++ G+ +++
Sbjct: 70 DTMNFDVIKGKPVRI 84
Score = 50 (22.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 530 SKYGRVK--HIYVDKR-SAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + ++ D+ S G+ ++ FE+ EAA A + M+ M R++ F ++
Sbjct: 120 SAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 117 (46.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+K++VG L+ E Q+R+ FE FG +E ++LP+D +T + +GF F+ F + + K
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVK 203
Score = 97 (39.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVM 292
+++D+ ++F+K G+V D + MD N+ RS+G G+I F D SV + L G+ +
Sbjct: 76 SKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGR--L 133
Query: 293 VKPSEA 298
+ P +A
Sbjct: 134 IDPKKA 139
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 171 (65.3 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 49/154 (31%), Positives = 77/154 (50%)
Query: 239 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV---- 293
E FS+ GK V+++MD R SKG G++ F A+A ++G+ + G+ V V
Sbjct: 209 EIFSRFGKTLSVKVMMDHTGR-SKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQ 267
Query: 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 353
K E + L + Y ++ LYV NL + + +LRK F P+G + ++
Sbjct: 268 KRLERQSELKRKFEQMKQERVSRYQGVN--LYVKNLDDGIDDERLRKEFSPYGTITSAKV 325
Query: 354 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
E G KGFGFV F+ E A A + +NG++
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 169 (64.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 52/175 (29%), Positives = 86/175 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
VF + + +Y+ FS G + +++ D N S+G G++ F + AI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIQTM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +LR++
Sbjct: 159 NGMLLNDRKVFVGHFKSRK---EREAEFGARAME-----FTNVYIKNFGDDMDDNRLREI 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
F FG V++ +D TG+ KGFGFV F + E A+ A + +NGK EI GR + V
Sbjct: 211 FSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGK-EINGRMVYV 263
Score = 135 (52.6 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 45/156 (28%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG + +R+ D SRRS G YI F A+ ++ +++ G+PV
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPV 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPGLRKSGVG--------------NVFIKNLDDSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G +G GFV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-RGHGFVHFETQEAATRAIQTMNGML 162
Score = 117 (46.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 313 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372
A+GP G LYVG+LH ++TE L + F P GP+ +++ D+ + + G+ ++ F Q
Sbjct: 3 ASGP-GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQ 61
Query: 373 LEHAKAAQSALNGKLEIVGRTLKV 396
A+ A +N ++ I GR +++
Sbjct: 62 PADAERALDTMNFEV-IKGRPVRI 84
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G ++ FE+ EAA A + M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKER 179
Query: 586 EAKF 589
EA+F
Sbjct: 180 EAEF 183
Score = 49 (22.3 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 525 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S YG + V S GF ++ F S E A A M+ R + + L A+
Sbjct: 310 LRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 47 (21.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 525 VEEECSKYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 575
+ E S++G+ + V D RS GF ++ FE E A A M+ + R++
Sbjct: 207 LREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Score = 39 (18.8 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 391 GRTLKVSSVTDHVG 404
G+TL V + DH G
Sbjct: 215 GKTLSVKVMMDHTG 228
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 170 (64.9 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 45/160 (28%), Positives = 84/160 (52%)
Query: 213 EAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 270
E+D E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F
Sbjct: 7 ESDWREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 66
Query: 271 DVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLH 330
+ V A+A + G+ +V+P A + + G T +KL+VG +
Sbjct: 67 SMAEVDAAMAARPHTIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIK 116
Query: 331 FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
+ E LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 117 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 156
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 163 (62.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 51/175 (29%), Positives = 83/175 (47%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 273
AD +++A + K TE +++ F V VR+ D+N RRS G YI F +
Sbjct: 42 ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN-RRSLGYAYINFSNPN 100
Query: 274 SVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN 332
A+ AL+ L +P+ + S + + T G +++ NL +
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPS-----TRLSGKGN---------IFIKNLDAS 146
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
+ L + F FG + ++ +D+ TG+ KG+GFVQF + E A+AA LNG L
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGML 200
Score = 138 (53.6 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 49/193 (25%), Positives = 89/193 (46%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
++E E P V+ +P + E ++ + F K G + ++ D+ S S+ G
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFG 272
Query: 266 YIEFYDVMSVPMAIALSGQLLLGQPVMV-----KPSEAEKNLVQS-NTSAGGTATGPYGA 319
++ F + A+ + LG V+ K SE E+ L + GA
Sbjct: 273 FVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGA 332
Query: 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379
LY+ NL ++ + +L+++F +G V ++ L+ + G +GFGFV ++ E A A
Sbjct: 333 ---NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRA 388
Query: 380 QSALNGKLEIVGR 392
S +NGK+ +GR
Sbjct: 389 LSEMNGKM--IGR 399
Score = 56 (24.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 522 QGDVEEECSKYGRVKHIYVDKRSAG----FVYLRFESTEAAASAQRAMH 566
+ ++ + K+G + V + +G F ++ FE TEAAASA M+
Sbjct: 242 EDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 52 (23.4 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 525 VEEECSKYGRV--KHIYVDKR--SAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIF 579
++E S+YG V + ++ + S GF ++ + + E A A M+ + R+ L A+
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 580 MKPEDYEAKFKS 591
+ ED A ++
Sbjct: 408 QRKEDRRAHLQA 419
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 44/156 (28%), Positives = 76/156 (48%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ 289
+ TE +YE FS AG + +R+ D+ +RRS G Y+ + + A+ L+ ++ G+
Sbjct: 12 EVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGR 71
Query: 290 PVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVE 349
PV + S+ + +L +S +++ NL + L +F FG +
Sbjct: 72 PVRIMWSQRDPSLRKSGVG--------------NVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 350 LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
++ D E G KG+GFV F + E A+ A A+NG
Sbjct: 118 SCKVACD-EKGP-KGYGFVHFQKQESAERAIDAMNG 151
Score = 109 (43.4 bits), Expect = 0.00073, P = 0.00073
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH +TE L + F P GP+ +++ D T + G+ +V + Q AK A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 384 NGKLEIVGRTLKV 396
N + I GR +++
Sbjct: 64 NFDV-IKGRPVRI 75
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 44/156 (28%), Positives = 76/156 (48%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ 289
+ TE +YE FS AG + +R+ D+ +RRS G Y+ + + A+ L+ ++ G+
Sbjct: 12 EVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGR 71
Query: 290 PVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVE 349
PV + S+ + +L +S +++ NL + L +F FG +
Sbjct: 72 PVRIMWSQRDPSLRKSGVG--------------NVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 350 LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
++ D E G KG+GFV F + E A+ A A+NG
Sbjct: 118 SCKVACD-EKGP-KGYGFVHFQKQESAERAIDAMNG 151
Score = 109 (43.4 bits), Expect = 0.00073, P = 0.00073
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH +TE L + F P GP+ +++ D T + G+ +V + Q AK A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 384 NGKLEIVGRTLKV 396
N + I GR +++
Sbjct: 64 NFDV-IKGRPVRI 75
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 168 (64.2 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 74
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 75 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 124
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 125 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 159
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 171 (65.3 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 52/185 (28%), Positives = 91/185 (49%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E + TVF + T+ + E F V+ +++ DR + RSKG G++ F D
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 276 PMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTA--TGPYGAIDRKLYVGNLHFN 332
A+ ++GQ +P+ P+ +K L S T +G + ++VG + +
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQS 288
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
+TE L+ +F FG + V++P G K GFVQ+A A+ A S LNG ++ G+
Sbjct: 289 VTEDDLKSVFGQFGELVHVKIP----AG--KRCGFVQYANRACAEQALSVLNGT-QLGGQ 341
Query: 393 TLKVS 397
++++S
Sbjct: 342 SIRLS 346
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 38/154 (24%), Positives = 70/154 (45%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293
E + F G+ ++I ++ + S+G G+IEF + + + Q G P+
Sbjct: 93 ENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL----QTYNGAPMPS 148
Query: 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEP-FGPVELVQ 352
N Q A GP + ++VG+L ++T+ L + F+ + V+ +
Sbjct: 149 SEQAFRLNWAQLGAGERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAK 204
Query: 353 LPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
+ D TG+ KG+GFV+FA A + +NG+
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 112 (44.5 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
+K++VG L+ TE ++R+ F FG +E ++LP+D ++ + +GF F+ F + E K
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVK 139
Score = 98 (39.6 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVM 292
+++D+ ++F+K G+V D + MD N+ RS+G G+I F D SV + L G+ +
Sbjct: 12 SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 71
Query: 293 VKPSEAEKNLVQSNTSAGG 311
K + A K GG
Sbjct: 72 PKKAMAMKKDPVKKIFVGG 90
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 153 (58.9 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 44/145 (30%), Positives = 76/145 (52%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVM 292
T++D+ ++FSK G+V D L +D + RS+G G++ F + SV + L G+ +
Sbjct: 13 TKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID 72
Query: 293 VKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQ 352
K ++A K P +K++VG L + E ++R+ F FG VE ++
Sbjct: 73 PKRAKAMKT------------KEPV----KKIFVGGLSPDTPEEKIREYFGGFGEVESIE 116
Query: 353 LPLDIETGQCKGFGFVQFAQLEHAK 377
LP+D +T + +GF F+ F + E K
Sbjct: 117 LPMDNKTNKRRGFCFITFKEEEPVK 141
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 173 (66.0 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 56/195 (28%), Positives = 95/195 (48%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + + E FS+ GK V+++ D N + S
Sbjct: 75 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-S 132
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 133 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 192
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 193 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 248
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 249 TKAVTEMNGR--IVG 261
Score = 148 (57.2 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 50/185 (27%), Positives = 81/185 (43%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 60
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + L++L
Sbjct: 61 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDESLKEL 112
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D G+ KGFGFV + + E A A +NGK EI G+ + V
Sbjct: 113 FSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKIIFVGRAQK 170
Query: 402 HVGTQ 406
V Q
Sbjct: 171 KVERQ 175
Score = 57 (25.1 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 212 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 271
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 272 RKEERKA 278
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 176 (67.0 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 63/216 (29%), Positives = 99/216 (45%)
Query: 205 EKKEVVEPEADPERDQR------TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS 258
E+ + E D E D+ T+F + TE + E FSK G V+ + ++
Sbjct: 695 EETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDK 754
Query: 259 RR---SKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSE-AEKNLVQSNTSAGGTA 313
S G G++E+ S A+ L G ++ G + VK SE A + V+S+
Sbjct: 755 AGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVK 814
Query: 314 TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQ 372
K+ V N+ F T ++R+LF FG ++ V+LP + TG +GFGFV F
Sbjct: 815 KQKTS----KILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLT 870
Query: 373 LEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDT 408
+ AK A +AL + GR L V + T++T
Sbjct: 871 KQDAKKAFNALCHSTHLYGRRL----VLEWADTEET 902
Score = 166 (63.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 62/207 (29%), Positives = 97/207 (46%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
K+K +V EA TV PL TE+ + EFFS ++ + + M +N++ K
Sbjct: 281 KQKNQVSSAEASTPH---TVKLRGAPLNVTEQKIREFFSP---LKPLAIRMGKNTQ-GKS 333
Query: 264 VGYIEFYDVMS---VPMAIALSGQLLLGQPVMVKPSE-AEKNLVQSNTSAGGTATGPYGA 319
G+I F D+ S V A+ + + GQ V V E A K V + T P+
Sbjct: 334 TGFI-FVDLKSEAEVQKALKRKKEYIGGQYVEVSRCENAPKETVTAKTD-----DQPWQR 387
Query: 320 IDR------------KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 367
+ R +L+V NL F TE L K+F +GP+ + P+D T + KGF F
Sbjct: 388 MKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAF 447
Query: 368 VQFAQLEHAKAAQSALNGKLEIVGRTL 394
+ + EHA A + ++G++ GR +
Sbjct: 448 ITYMIPEHAVKAYAEMDGQV-FQGRMM 473
Score = 52 (23.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 522 QGDVEEECSKYGRVKHIYVDKR--------SAGFVYLRFESTEAAASAQRAM 565
+G ++E SK G VK + K+ S GF ++ ++ E+A A R +
Sbjct: 730 EGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRL 781
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 176 (67.0 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 58/214 (27%), Positives = 93/214 (43%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR---S 261
E++E E E + T+F + TE + FSKAG V+ + +N S
Sbjct: 714 EEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLS 773
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
G G++E+ A+ L G ++ + V+ SE ++T P
Sbjct: 774 MGFGFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQV---PRKQT 830
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQLEHAKAA 379
K+ V N+ F + ++++LF FG ++ V+LP + TG +GFGFV F + AK A
Sbjct: 831 TSKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Query: 380 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 413
AL + GR L + V Q K+A
Sbjct: 891 FQALCHSTHLYGRRLVLEWADSEVSLQALRRKTA 924
Score = 155 (59.6 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 229 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK-GVGYIEFYDVMSVPMAIALSGQLLL 287
P TE++V EF + V +R++ RN+ +K G +++F + A+ + + +
Sbjct: 305 PFNVTEKNVLEFLAPLRPVA-IRIV--RNAHGNKTGYIFVDFRSEEEIKQALKCNREYMG 361
Query: 288 GQPVMV---KPSEAEKNLVQSNTSAG-GTATGPYG-----AIDRKLYVGNLHFNMTETQL 338
G+ + + K K ++++ G G A +L++ NL + TE L
Sbjct: 362 GRYIEIFREKNVPTTKGPLKNSAKPWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDL 421
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV-S 397
++LF FGP+ + P+D T + KGF FV F EHA A + ++G++ GR L V
Sbjct: 422 QRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQV-FQGRMLHVLP 480
Query: 398 SVTDHVGTQDT 408
S ++DT
Sbjct: 481 STIKKEASEDT 491
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 170 (64.9 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 47/177 (26%), Positives = 87/177 (49%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 61
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLRK 340
L G+ + KP + G G ++ K++VG + N ET+LR+
Sbjct: 62 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELRE 121
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
F+ FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 122 YFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 175
Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F +P E ++ E+F K G V +V +I D +R +G G+I F D SV A+ +
Sbjct: 105 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 164
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG 315
++G+ V VK +E + Q+ G + G
Sbjct: 165 FHDIMGKKVEVKRAEPRDSKSQTPGPPGASQWG 197
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 173 (66.0 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 53/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDERLKDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FGP V++ D E+G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 144 (55.7 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 139 (54.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 49/188 (26%), Positives = 86/188 (45%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + F K G V+++ D S +S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ L G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ ++
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSYMQRM 346
Query: 377 KAAQSALN 384
+ ++ N
Sbjct: 347 ASVRAVPN 354
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 161 (61.7 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 53/175 (30%), Positives = 83/175 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG--SKGHGFVHFETEEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + GT T + +Y+ N M + L L
Sbjct: 159 NGMLLNDRKVFVGQFKSRKE----REAELGTRTKEF----TNVYIKNFGDRMDDKTLNGL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
F FG V V++ D E G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKHIYV 263
Score = 155 (59.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 54/194 (27%), Positives = 93/194 (47%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + ++ + F + G+V V+++ D + S
Sbjct: 173 FKSRKER-EAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGK-S 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE-------KNLVQSNTSAGGTA 313
KG G++ F A+ ++G+ L G+ + V P++ + K + T G
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIR 290
Query: 314 TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 373
Y I+ LYV NL + + +L+K F PFG + ++ E G+ KGFGFV F+
Sbjct: 291 ---YQGIN--LYVKNLDDGIDDERLQKEFSPFGTITSTKVMT--EGGRSKGFGFVCFSSP 343
Query: 374 EHAKAAQSALNGKL 387
E A A S +NG++
Sbjct: 344 EEATKAVSEMNGRI 357
Score = 129 (50.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 45/175 (25%), Positives = 77/175 (44%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 273
+DP +++ + TE +YE FS AG + +R+ D +RRS G + F
Sbjct: 4 SDPGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPA 63
Query: 274 SVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN 332
A+ ++ ++ G+PV + S+ + +L +S +++ NL+
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVG--------------NVFIKNLNKT 109
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
+ L F FG + ++ D E G KG GFV F E A+ A +NG L
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCD-ENGS-KGHGFVHFETEEAAERAIEKMNGML 162
Score = 56 (24.8 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+++E S +G + V RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 531 KYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMH 566
++G+V + V D+ +S GF ++ FE E A A M+
Sbjct: 213 RFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 122 (48.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 46/167 (27%), Positives = 74/167 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F Q+P E ++ F+ + V LI ++ + +G ++ SVP
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFV------SVPSRE--E 56
Query: 283 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLF 342
+ Q K + N +Q A + KL+VG L + E Q+R+LF
Sbjct: 57 ADRAIEQLHNSKKFQGVLNNLQVKY-----ADSEQEKLASKLFVGMLPRSYEEEQIRELF 111
Query: 343 EPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG-KLE 388
EP G VE + + L + KG GF++F E A +A + LNG KL+
Sbjct: 112 EPHGVVEDICI-LRGPNSESKGCGFIKFDNRESALSAIATLNGMKLD 157
Score = 114 (45.2 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 313 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372
+ GP G+ L+V N+ ++ L LF+ +G V ++ +D TG KGFGFV +
Sbjct: 397 SVGPQGS---NLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDN 453
Query: 373 LEHAKAAQSALNGKLEIVGRTLKVS-SVTDHVGTQ 406
A A S L+G++ + G+ LKVS T G+Q
Sbjct: 454 PASANLAISNLHGQM-MAGKKLKVSLKQTSGQGSQ 487
Score = 104 (41.7 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 214 ADPERDQRT--VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
AD E+++ +F +P E + E F G V D+ ++ NS SKG G+I+F +
Sbjct: 82 ADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSE-SKGCGFIKFDN 140
Query: 272 VMSVPMAIA-LSGQLLLGQP--VMVKPSEAEKN 301
S AIA L+G L G P ++VK ++ EK+
Sbjct: 141 RESALSAIATLNGMKLDGSPNPLVVKFADTEKD 173
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 531 KYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFA 571
+YG V +YVDK S GF ++ +++ +A A +H + A
Sbjct: 425 QYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNLHGQMMA 470
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 173 (66.0 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 56/195 (28%), Positives = 95/195 (48%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + + E FS+ GK V+++ D N + S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-S 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 148 (57.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 50/185 (27%), Positives = 81/185 (43%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDESLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D G+ KGFGFV + + E A A +NGK EI G+ + V
Sbjct: 211 FSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKIIFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 131 (51.2 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 43/156 (27%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQEAADKAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 50 (22.7 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 45 (20.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+F E+ + ++E S++G+ + V + +S GF ++ +E E A A M+ +
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 571 ARRLI 575
+ ++I
Sbjct: 257 SGKII 261
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 164 (62.8 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 54/191 (28%), Positives = 90/191 (47%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + E F K G +R++ D +S +S
Sbjct: 173 FKSRKER-EAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKS 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ + G+ V V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 160 (61.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 50/190 (26%), Positives = 90/190 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+++
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAEMGARAKE-----FTNVYIKNFGEDMDDEKLKEI 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F +GP +++ D ++G+ KGFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGK-EMNGKQVYVGRAQK 268
Query: 402 HVGTQDTAAK 411
G + T K
Sbjct: 269 K-GERQTELK 277
Score = 144 (55.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETHEAAERAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I GR +++
Sbjct: 73 NFDV-IKGRPVRI 84
Score = 57 (25.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEAKFKS 591
+ E+ +A S
Sbjct: 370 RKEERQAHLTS 380
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 525 VEEECSKYGRVKHIYV---DK-RSAGFVYLRFESTEAAASAQRAM 565
++E KYG I V D +S GF ++ FE E AQRA+
Sbjct: 207 LKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHE---DAQRAV 248
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 168 (64.2 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 64 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 113
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 114 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 174 (66.3 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 58/204 (28%), Positives = 92/204 (45%)
Query: 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAL 281
T+F ++P A + E FS+ G V+ ++ ++ S+ +G GY+ F + V A+
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK- 63
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG------PYG----AIDRK--LYVGNL 329
++ + + + A+K L G P D+K L + NL
Sbjct: 64 --EITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNL 121
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
F +E L+ +F FG V V +P + G+ +GFGFVQF L A A +N K EI
Sbjct: 122 SFKCSEDDLKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMK-EI 179
Query: 390 VGRTLKVSSVTDHVGTQDTAAKSA 413
GRT+ V +DT + SA
Sbjct: 180 KGRTVAVDWAVAKDKYKDTQSVSA 203
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA--- 378
+ +++ NL F+ E +L +L + FG ++ V++ L +T KG F QF E A+
Sbjct: 335 KTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLL 394
Query: 379 AQSALN--GKLEIVGRTLKVSSVTDHVGTQDTAAK 411
A S N G L++ GR LKV D T+D AAK
Sbjct: 395 AASPENEAGGLKLDGRQLKV----DLAVTRDEAAK 425
Score = 60 (26.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 19/89 (21%), Positives = 43/89 (48%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
KKE +A + + + K +E D+ F++ G V +V I + + +G G
Sbjct: 99 KKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVN-IPRKPDGKMRGFG 157
Query: 266 YIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293
+++F +++ A+ ++ + + G+ V V
Sbjct: 158 FVQFKNLLEAGKALKGMNMKEIKGRTVAV 186
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 173 (66.0 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 56/195 (28%), Positives = 95/195 (48%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + + E FS+ GK V+++ D N + S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-S 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 148 (57.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 50/185 (27%), Positives = 81/185 (43%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDESLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D G+ KGFGFV + + E A A +NGK EI G+ + V
Sbjct: 211 FSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKIIFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 131 (51.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 43/156 (27%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQEAADKAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 50 (22.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 45 (20.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+F E+ + ++E S++G+ + V + +S GF ++ +E E A A M+ +
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 571 ARRLI 575
+ ++I
Sbjct: 257 SGKII 261
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 108 (43.1 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372
+K++VG L+ TE ++R+ F FG +E ++LP D +T + +GF F+ F +
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKE 179
Score = 104 (41.7 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D +F + +++D+ ++FSK G+V D + MD N+ RS+G G+I F + SV
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGG 311
+ L G+ + K + A K GG
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVGG 135
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 175 (66.7 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 59/214 (27%), Positives = 93/214 (43%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR---S 261
E++E E E + T+F + TE + FSK G V+ + +N S
Sbjct: 719 EEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLS 778
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
G G++E+ A+ L G ++ G + V+ SE + T A +
Sbjct: 779 MGFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTS- 837
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQLEHAKAA 379
K+ V N+ F ++R+LF FG ++ V+LP + TG +GFGFV F + AK A
Sbjct: 838 --KILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRA 895
Query: 380 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 413
+AL + GR L + V Q K+A
Sbjct: 896 FNALCHSTHLYGRRLVLEWADSEVTLQALRRKTA 929
Score = 163 (62.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 56/191 (29%), Positives = 93/191 (48%)
Query: 229 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK-GVGYIEFYDVMSVPMAIALSGQLLL 287
P TE++V EF + V +R++ RN+ +K G +++F V A+ + + +
Sbjct: 303 PFNVTEKNVMEFLAPLKPVA-IRIV--RNAHGNKTGYVFVDFSSEEEVKKALQCNREYMG 359
Query: 288 GQPVMV---KPSEAEKNLVQSNTSAG-GTATGPYG-----AIDRKLYVGNLHFNMTETQL 338
G+ + V K K +++T A G G + A +L+V NL + +E L
Sbjct: 360 GRYIEVFREKSIPTAKAPPKNSTKAWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDL 419
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV-S 397
KLF +GP+ + P+D T + KGF FV F EHA A + ++G++ GR L V
Sbjct: 420 EKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQGRMLHVLP 478
Query: 398 SVTDHVGTQDT 408
S ++DT
Sbjct: 479 STIKKEASEDT 489
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 164 (62.8 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 49/185 (26%), Positives = 88/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+++
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGDDMNDERLKEM 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F +GP V++ D + G+ KGFGFV F + E A+ A +NGK ++ G+++ V
Sbjct: 211 FGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGK-DMNGKSMFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 154 (59.3 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + E F K G V+++ D N + S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGK-S 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 145 (56.1 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIDKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I GR +++
Sbjct: 73 NFDV-IKGRPVRI 84
Score = 52 (23.4 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 543 RSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFMKPEDYEA 587
RS GF ++ F S E A A M+ R A + L A+ + E+ +A
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 42 (19.8 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 525 VEEECSKYG---RVKHIYVDK-RSAGFVYLRFESTEAAASAQRAMH 566
++E KYG VK + D +S GF ++ FE E A A M+
Sbjct: 207 LKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 168 (64.2 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 74
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 75 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 124
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 125 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 159
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 168 (64.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 76 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 125
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 168 (64.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 76 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 125
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 168 (64.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 76 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 125
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 168 (64.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 76 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 125
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 168 (64.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 76 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 125
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 165 (63.1 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 50/175 (28%), Positives = 83/175 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
+F + + +Y+ FS G + +++ N S+G G++ F + AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ + + G A G +YV NL +M E L+ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRQ---KREAELGARALG-----FTNIYVKNLRVDMDEQGLQDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
F FG + V++ D GQ +GFGF+ F + E A+ A +NGK E+ G+ L V
Sbjct: 211 FSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHMNGK-EVSGQLLYV 263
Score = 153 (58.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 46/174 (26%), Positives = 88/174 (50%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
++ + + E+ + + FS+ GK + V+++ D N + S+G G+I F A+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQ-SRGFGFINFEKHEEAQKAVDHM 251
Query: 282 SGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQ 337
+G+ + GQ + V K +E + L + Y ++ LYV NL ++ + +
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVN--LYVKNLDDSINDDR 309
Query: 338 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
L+++F +G + ++ E+ KGFGFV F+ E A A + +NG+ IVG
Sbjct: 310 LKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 135 (52.6 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS G + +R+ D +RRS G YI F A+ ++ +++ GQP+
Sbjct: 23 TEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S + L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSHRDPGLRRSGMG--------------NIFIKNLENSIDNKALYDTFSTFGSILSS 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ + E G +GFGFV F E A+ A + +NG L
Sbjct: 129 KVVYN-EHGS-RGFGFVHFETHEAAQKAINTMNGML 162
Score = 114 (45.2 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 314 TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 373
T +G LYVG+LH ++TE L ++F P G + +++ D+ T + G+ ++ F Q
Sbjct: 3 TRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 374 EHAKAAQSALNGKLEIVGRTLKV 396
A+ A +N ++ I G+ +++
Sbjct: 63 ADAERALDTMNFEM-IKGQPIRI 84
Score = 56 (24.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K +Y + S GF ++ FE+ EAA A M+ M R++ F +
Sbjct: 120 STFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKR 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 53 (23.7 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 518 DLEIQGDVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAM-HM 567
D++ QG +++ S++G+ + + V + +S GF ++ FE E AQ+A+ HM
Sbjct: 201 DMDEQG-LQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHE---EAQKAVDHM 251
Score = 50 (22.7 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFA 571
+ D I D ++E S YG + V S GF ++ F S E A A M+ R
Sbjct: 300 NLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 572 RR-LISAIFMKPEDYEA 587
+ L A+ + E+ +A
Sbjct: 360 TKPLYVALAQRKEERKA 376
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 129 (50.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 43/152 (28%), Positives = 64/152 (42%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
++L++ NL ++ E L+ LF PFG +E V +P+D +T KGF ++ F + A A
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYL 382
Query: 382 ALNGKLEIVGRTLKV--SSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-- 437
L+ K GR L V + + D A A S L
Sbjct: 383 ELDAK-PFQGRLLHVLPAKARSSILLDDYALSKLPLKKQRELKRKNTAASSTFSWNSLYM 441
Query: 438 DRTGIATSIAGSLGVA------PAVNGSAVNQ 463
+ + TS+A LGV P + SAV Q
Sbjct: 442 NADAVVTSLASRLGVKKTDILDPTSSDSAVKQ 473
Score = 109 (43.4 bits), Expect = 7.3e-10, Sum P(3) = 7.3e-10
Identities = 41/125 (32%), Positives = 63/125 (50%)
Query: 294 KPSEAEK-NLVQSNTSAGGTATGPYGAIDRK-LYVGNLHFNMTETQLRKLFEPF-GPVEL 350
KP A+K N V++ TS T ++D +YV NL+F+ + + +K+F+P G +
Sbjct: 590 KPELAQKVNAVEATTSEK-VGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSA 648
Query: 351 V--QLPLDIETGQ--CKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQ 406
V P G+ GFGFV+F A AA A+NG + + G L++ H G
Sbjct: 649 VIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFV-LDGHKLEIK--LSHQGV- 704
Query: 407 DTAAK 411
D AA+
Sbjct: 705 DAAAE 709
Score = 89 (36.4 bits), Expect = 7.3e-10, Sum P(3) = 7.3e-10
Identities = 23/103 (22%), Positives = 48/103 (46%)
Query: 204 KEKKEVVEPEADPE--RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
K + V E E + + + + +F + E D+ F G++ V + +D+ +
Sbjct: 304 KAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNP 363
Query: 262 KGVGYIEFYDVMSVPMA-IALSGQLLLGQPVMVKPSEAEKNLV 303
KG YI+F+D A + L + G+ + V P++A +++
Sbjct: 364 KGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAKARSSIL 406
Score = 66 (28.3 bits), Expect = 7.3e-10, Sum P(3) = 7.3e-10
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 524 DVEEECSKYGRVKHIYVDK---RSA-GFVYLRFESTEAAASAQRAM-HMRWFARRLI 575
DV+ YG+++ + V K RSA GF + F + AA+A RA+ + R L+
Sbjct: 736 DVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLV 792
Score = 54 (24.1 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLP 354
D L V N + + +L LF PFG + + +P
Sbjct: 505 DNVLLVKNFPYGTSAEELTSLFSPFGELGRILIP 538
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 544 SAGFVYLRFESTEAAASAQRAMH 566
S GF ++ F+ +A +A AM+
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMN 686
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 166 (63.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 45/161 (27%), Positives = 83/161 (51%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D+ +F + T++D+ ++F+K G+V D L +D + RS+G G++ F + SV
Sbjct: 50 EEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
I L G+ + K ++A K P +K++VG L + E
Sbjct: 110 KVITQKEHKLNGKVIDPKKAKAMKT------------KEPV----KKIFVGGLSPDTPEE 153
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
++R+ F+ +G VE ++LP++ +T + +GF F+ F + E K
Sbjct: 154 KIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVK 194
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 168 (64.2 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 60/194 (30%), Positives = 98/194 (50%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ KE ++ E ERD RT+F +P + TE ++ F A +VRL++++ SKG+
Sbjct: 354 KSKESLK-ENKKERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKEGS-SKGM 408
Query: 265 GYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 323
YIEF A+ G + G+ MV EK+ Q + GG G + K
Sbjct: 409 AYIEFKTEAEAEKALEEKQGTEVDGR-AMVIDYTGEKS--QQESQKGG------GERESK 459
Query: 324 -LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
L V NL + +E L++LF+ +++P + + G+ KG+ FV+F E AK A ++
Sbjct: 460 TLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNS 515
Query: 383 LNGKLEIVGRTLKV 396
N EI GR +++
Sbjct: 516 CNNT-EIEGRAIRL 528
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 50/186 (26%), Positives = 87/186 (46%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
EK + + ER+ +T+ + A+E + E F KA ++ + N R KG
Sbjct: 443 EKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGY 498
Query: 265 GYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 323
++EF A+ + + + G+ + ++ S N A G + +
Sbjct: 499 AFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMN------ARGGFNQQSKT 552
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
L+V L + TE LR+ FE G + ++ D +TG KGFGFV F+ E AKAA+ A+
Sbjct: 553 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 609
Query: 384 -NGKLE 388
+G+++
Sbjct: 610 EDGEID 615
Score = 126 (49.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 42/161 (26%), Positives = 81/161 (50%)
Query: 237 VYEFFSKAG-KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 295
+ EFF K +V +VR+ SK GY++F + A+ L+G+ L+G + ++
Sbjct: 299 IKEFFGKKNLQVSEVRI------GSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEK 352
Query: 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPL 355
++++++L ++ R L+V NL + +TE +++ +FE +E V+L L
Sbjct: 353 AKSKESLKENKKERDA----------RTLFVKNLPYRVTEDEMKNVFE--NALE-VRLVL 399
Query: 356 DIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ E G KG +++F A+ A G E+ GR + +
Sbjct: 400 NKE-GSSKGMAYIEFKTEAEAEKALEEKQGT-EVDGRAMVI 438
Score = 48 (22.0 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 544 SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583
S GF ++ F S E A +A+ AM ++ F KP+
Sbjct: 588 SKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 627
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 173 (66.0 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 55/187 (29%), Positives = 88/187 (47%)
Query: 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAL 281
T+F ++P A + E FS+ G V+ ++ ++ S+ +G GY+ F V V A+
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALK- 63
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG--------PYGA--IDRK--LYVGNL 329
++ + + + A+K L + G T P A D+K L + NL
Sbjct: 64 --EITTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNL 121
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
F +E L+ +F FG + V +P + G+ +GF FVQF L A A +N K EI
Sbjct: 122 SFKCSEDDLKTVFSQFGTILEVNIPRKPD-GKMRGFAFVQFKNLLEAGKALKGMNMK-EI 179
Query: 390 VGRTLKV 396
GRT+ V
Sbjct: 180 KGRTVAV 186
Score = 111 (44.1 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK---- 377
+ +++ NL F+ E L +L + FG ++ V++ L +T KG F QF E A+
Sbjct: 332 KTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLE 391
Query: 378 -AAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAK 411
A+ A G L++ GR LKV D T+D AAK
Sbjct: 392 AASPEAEGGGLKLDGRQLKV----DLAVTRDEAAK 422
Score = 62 (26.9 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 25/111 (22%), Positives = 54/111 (48%)
Query: 205 EKKEVVEPEADPER----DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
E E E E P++ D++ + + K +E D+ FS+ G + +V I +
Sbjct: 93 ENSESPEKELKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVN-IPRKPDG 151
Query: 260 RSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSA 309
+ +G +++F +++ A+ ++ + + G+ V V + A K+ +S SA
Sbjct: 152 KMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVA-KDKYKSTQSA 201
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 168 (64.2 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 60/194 (30%), Positives = 98/194 (50%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ KE ++ E ERD RT+F +P + TE ++ F A +VRL++++ SKG+
Sbjct: 356 KSKESLK-ENKKERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKEGS-SKGM 410
Query: 265 GYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 323
YIEF A+ G + G+ MV EK+ Q + GG G + K
Sbjct: 411 AYIEFKTEAEAEKALEEKQGTEVDGR-AMVIDYTGEKS--QQESQKGG------GERESK 461
Query: 324 -LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
L V NL + +E L++LF+ +++P + + G+ KG+ FV+F E AK A ++
Sbjct: 462 TLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNS 517
Query: 383 LNGKLEIVGRTLKV 396
N EI GR +++
Sbjct: 518 CNNT-EIEGRAIRL 530
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 50/186 (26%), Positives = 87/186 (46%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
EK + + ER+ +T+ + A+E + E F KA ++ + N R KG
Sbjct: 445 EKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGY 500
Query: 265 GYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 323
++EF A+ + + + G+ + ++ S N A G + +
Sbjct: 501 AFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMN------ARGGFNQQSKT 554
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
L+V L + TE LR+ FE G + ++ D +TG KGFGFV F+ E AKAA+ A+
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 384 -NGKLE 388
+G+++
Sbjct: 612 EDGEID 617
Score = 135 (52.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 53/206 (25%), Positives = 98/206 (47%)
Query: 204 KEKKEVVE---PEADPERDQRTVFAYQM------PLKATER---DVYEFFSKAG-KVRDV 250
K KKE+ PEA ++ + A+ + P K E + EFF K +V +V
Sbjct: 256 KRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV 315
Query: 251 RLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAG 310
R+ SK GY++F + A+ L+G+ L+G + ++ ++++++L ++
Sbjct: 316 RI------GSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERD 369
Query: 311 GTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
R L+V NL + +TE +++ +FE +E V+L L+ E G KG +++F
Sbjct: 370 A----------RTLFVKNLPYRVTEDEMKNVFE--NALE-VRLVLNKE-GSSKGMAYIEF 415
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKV 396
A+ A G E+ GR + +
Sbjct: 416 KTEAEAEKALEEKQGT-EVDGRAMVI 440
Score = 48 (22.0 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 544 SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583
S GF ++ F S E A +A+ AM ++ F KP+
Sbjct: 590 SKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 172 (65.6 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + ++ E FS+ GK V+++ D S +S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 152 (58.6 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 50/185 (27%), Positives = 82/185 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDENLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D +G+ KGFGFV + + E A A +NGK EI G+ + V
Sbjct: 211 FSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGK-EITGKVIFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 131 (51.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 43/156 (27%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQEAADKAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 50 (22.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 43 (20.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+F E+ + ++E S++G+ + V + +S GF ++ +E E A A M+ +
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 571 ARRLI 575
++I
Sbjct: 257 TGKVI 261
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 168 (64.2 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 60/194 (30%), Positives = 98/194 (50%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+ KE ++ E ERD RT+F +P + TE ++ F A +VRL++++ SKG+
Sbjct: 356 KSKESLK-ENKKERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKEGS-SKGM 410
Query: 265 GYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 323
YIEF A+ G + G+ MV EK+ Q + GG G + K
Sbjct: 411 AYIEFKTEAEAEKALEEKQGTEVDGR-AMVIDYTGEKS--QQESQKGG------GERESK 461
Query: 324 -LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
L V NL + +E L++LF+ +++P + + G+ KG+ FV+F E AK A ++
Sbjct: 462 TLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNS 517
Query: 383 LNGKLEIVGRTLKV 396
N EI GR +++
Sbjct: 518 CNNT-EIEGRAIRL 530
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 50/186 (26%), Positives = 87/186 (46%)
Query: 205 EKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
EK + + ER+ +T+ + A+E + E F KA ++ + N R KG
Sbjct: 445 EKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGY 500
Query: 265 GYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 323
++EF A+ + + + G+ + ++ S N A G + +
Sbjct: 501 AFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMN------ARGGFNQQSKT 554
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
L+V L + TE LR+ FE G + ++ D +TG KGFGFV F+ E AKAA+ A+
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 384 -NGKLE 388
+G+++
Sbjct: 612 EDGEID 617
Score = 135 (52.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 53/206 (25%), Positives = 98/206 (47%)
Query: 204 KEKKEVVE---PEADPERDQRTVFAYQM------PLKATER---DVYEFFSKAG-KVRDV 250
K KKE+ PEA ++ + A+ + P K E + EFF K +V +V
Sbjct: 256 KRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV 315
Query: 251 RLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAG 310
R+ SK GY++F + A+ L+G+ L+G + ++ ++++++L ++
Sbjct: 316 RI------GSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERD 369
Query: 311 GTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
R L+V NL + +TE +++ +FE +E V+L L+ E G KG +++F
Sbjct: 370 A----------RTLFVKNLPYRVTEDEMKNVFE--NALE-VRLVLNKE-GSSKGMAYIEF 415
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKV 396
A+ A G E+ GR + +
Sbjct: 416 KTEAEAEKALEEKQGT-EVDGRAMVI 440
Score = 48 (22.0 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 544 SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583
S GF ++ F S E A +A+ AM ++ F KP+
Sbjct: 590 SKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 165 (63.1 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 49/175 (28%), Positives = 89/175 (50%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
+ D +F + +++D+ ++ S+ G+V D + D + RS+G G++ F D SV
Sbjct: 26 QEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVD 85
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ L+ L G+ ++ P A+ ++ P +K++VG L ++TE
Sbjct: 86 RVLELTEHKLDGK--LIDPKRAKA--IKGKEP-------P-----KKVFVGGLSPDITEE 129
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391
QLR+ F +G +E ++LP D +T + +GF FV FA LE + Q L + +G
Sbjct: 130 QLREYFGVYGEIESIELPTDTKTNERRGFCFVTFA-LE--EPVQKLLENRYHQIG 181
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 50/186 (26%), Positives = 87/186 (46%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+D VF + + T D+ F+ G++ D R++ D + +SKG G++ F++
Sbjct: 99 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 158
Query: 278 AIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATGPYGAIDRKLYVGNL 329
AI + GQ L G+ + KP A K+ +SNT + + +Y G +
Sbjct: 159 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGV 217
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
+TE +R+ F PFG + ++I KG+ F++F+ E A A ++NG I
Sbjct: 218 TSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTT-I 270
Query: 390 VGRTLK 395
G +K
Sbjct: 271 EGHVVK 276
Score = 158 (60.7 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 43/182 (23%), Positives = 91/182 (50%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
+T++ + TE + + FS+ G ++ ++IMD + + ++EF++ A+A
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 281 -LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQL 338
++G+ ++G+ V V + + Q ++ T + D ++VG+L +T +
Sbjct: 61 AMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 118
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398
+ F PFG + ++ D+ TG+ KG+GFV F A+ A + G+ + GR ++ +
Sbjct: 119 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQIRTNW 177
Query: 399 VT 400
T
Sbjct: 178 AT 179
Score = 50 (22.7 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 530 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 561
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 231 SPFGQIMEIRVFPDK---GYSFIRFSSHESAAHA 261
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 121 (47.7 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 320 IDRK--LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
ID K L V L NM++ +LR LF G VE +L D G G+GFV + A+
Sbjct: 30 IDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAE 89
Query: 378 AAQSALNGKLEIVGRTLKVS 397
A S LNG L + +T+KVS
Sbjct: 90 RAISTLNG-LRLQSKTIKVS 108
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 43/174 (24%), Positives = 78/174 (44%)
Query: 214 ADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 272
AD D +T + +P ++ ++ FS G+V +LI D+ + S G G++ + +
Sbjct: 26 ADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNP 85
Query: 273 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN 332
AI+ L L Q +K S A S+ S D LY+ L
Sbjct: 86 NDAERAISTLNGLRL-QSKTIKVSYARP----SSDSIK----------DANLYISGLPKT 130
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
MT+ + ++F +G + ++ +D +G +G F++F + A+ A LNG+
Sbjct: 131 MTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
Score = 117 (46.2 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 384 NGKLEIVGRTLKVSSVT 400
NG + + L+VS T
Sbjct: 320 NG-YRLGDKILQVSFKT 335
Score = 94 (38.1 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P +D +D ++ +P T++DV E F + G++ + R+++D+ S S+GV
Sbjct: 106 KVSYARPSSDSIKDAN-LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVA 164
Query: 266 YIEFYDVMSVPMAIA-LSGQ 284
+I F AI L+GQ
Sbjct: 165 FIRFDKRAEAEDAIKDLNGQ 184
Score = 61 (26.5 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 522 QGDVEEECSKYGRV--KHIYVDKRSA---GFVYLRFESTEAAASA 561
Q DVEE +YGR+ + VD+ S G ++RF+ A A
Sbjct: 133 QKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDA 177
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 171 (65.3 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + ++ E FS+ GK V+++ D S +S
Sbjct: 102 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKS 159
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 160 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 219
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 220 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 275
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 276 TKAVTEMNGR--IVG 288
Score = 150 (57.9 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 50/185 (27%), Positives = 83/185 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 87
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + LR+L
Sbjct: 88 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDENLREL 139
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D +G+ KGFGFV + + E A A +NGK E+ G+++ V
Sbjct: 140 FSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSIFVGRAQK 197
Query: 402 HVGTQ 406
V Q
Sbjct: 198 KVERQ 202
Score = 57 (25.1 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 239 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 299 RKEERKA 305
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 171 (65.3 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + ++ E FS+ GK V+++ D S +S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 150 (57.9 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 50/185 (27%), Positives = 82/185 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDENLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D +G+ KGFGFV + + E A A +NGK EI G+ + V
Sbjct: 211 FSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKVIFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 131 (51.2 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 43/156 (27%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQEAADKAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 50 (22.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+F E+ + ++E S++G+ + V + +S GF ++ +E E A A M+ +
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 571 ARRLI 575
+ ++I
Sbjct: 257 SGKVI 261
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 171 (65.3 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + ++ E FS+ GK V+++ D S +S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 150 (57.9 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 50/185 (27%), Positives = 83/185 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + LR+L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDENLREL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D +G+ KGFGFV + + E A A +NGK E+ G+++ V
Sbjct: 211 FSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSIFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 132 (51.5 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 43/156 (27%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQEAANKAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 50 (22.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 41 (19.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMH 566
+F E+ + + E S++G+ + V + +S GF ++ +E E A A M+
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 171 (65.3 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 59/201 (29%), Positives = 93/201 (46%)
Query: 204 KEKKEVVEPEADPERDQ---RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI-MDRNSR 259
++K +P+ + Q +T+FA + + D+ FF +AG+V DVRL D S
Sbjct: 364 EQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS- 422
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 319
KG G+IEF A+ ++G+LLLG+ V + + SN G G+
Sbjct: 423 -FKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGE-----GS 476
Query: 320 IDRKLYVGNLHFNMTETQLRKL----FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375
R +YV ++ E +++K F G V V +P D ETG +GF ++
Sbjct: 477 QSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS-GF 535
Query: 376 AKAAQSALNGKLEIVGRTLKV 396
+A Q L+G EI G + V
Sbjct: 536 DEALQ--LSGS-EIGGGNIHV 553
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 168 (64.2 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q TV+ + K +E ++E F +AG V + + DR + + +G G++EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S KNL GA +++GNL +
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAHNKNL-------------DVGA---NIFIGNLDPEI 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + + ++ D +TG KG+ F+ FA + + AA A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 PITVS 175
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 313 ATGPYGAI--DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
A GP D +YVG L ++E L +LF GPV +P D TGQ +G+GFV+F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
E A A +N +++ G+ ++V+ + H D A
Sbjct: 62 LSEEDADYAIKIMN-MIKLYGKPIRVNKASAHNKNLDVGA 100
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q TV+ + K +E ++E F +AG V + + DR + + +G G++EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S KNL GA +++GNL +
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAHNKNL-------------DVGA---NIFIGNLDPEI 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + + ++ D +TG KG+ F+ FA + + AA A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 PITVS 175
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 313 ATGPYGAI--DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
A GP D +YVG L ++E L +LF GPV +P D TGQ +G+GFV+F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
E A A +N +++ G+ ++V+ + H D A
Sbjct: 62 LSEEDADYAIKIMN-MIKLYGKPIRVNKASAHNKNLDVGA 100
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q TV+ + K +E ++E F +AG V + + DR + + +G G++EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S KNL GA +++GNL +
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAHNKNL-------------DVGA---NIFIGNLDPEI 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + + ++ D +TG KG+ F+ FA + + AA A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 PITVS 175
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 313 ATGPYGAI--DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
A GP D +YVG L ++E L +LF GPV +P D TGQ +G+GFV+F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
E A A +N +++ G+ ++V+ + H D A
Sbjct: 62 LSEEDADYAIKIMN-MIKLYGKPIRVNKASAHNKNLDVGA 100
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q TV+ + K +E ++E F +AG V + + DR + + +G G++EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S KNL GA +++GNL +
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAHNKNL-------------DVGA---NIFIGNLDPEI 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + + ++ D +TG KG+ F+ FA + + AA A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 PITVS 175
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 313 ATGPYGAI--DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
A GP D +YVG L ++E L +LF GPV +P D TGQ +G+GFV+F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
E A A +N +++ G+ ++V+ + H D A
Sbjct: 62 LSEEDADYAIKIMN-MIKLYGKPIRVNKASAHNKNLDVGA 100
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q TV+ + K +E ++E F +AG V + + DR + + +G G++EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S KNL GA +++GNL +
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAHNKNL-------------DVGA---NIFIGNLDPEI 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + + ++ D +TG KG+ F+ FA + + AA A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 PITVS 175
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 313 ATGPYGAI--DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
A GP D +YVG L ++E L +LF GPV +P D TGQ +G+GFV+F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
E A A +N +++ G+ ++V+ + H D A
Sbjct: 62 LSEEDADYAIKIMN-MIKLYGKPIRVNKASAHNKNLDVGA 100
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q TV+ + K +E ++E F +AG V + + DR + + +G G++EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S KNL GA +++GNL +
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAHNKNL-------------DVGA---NIFIGNLDPEI 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + + ++ D +TG KG+ F+ FA + + AA A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 PITVS 175
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 313 ATGPYGAI--DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
A GP D +YVG L ++E L +LF GPV +P D TGQ +G+GFV+F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
E A A +N +++ G+ ++V+ + H D A
Sbjct: 62 LSEEDADYAIKIMN-MIKLYGKPIRVNKASAHNKNLDVGA 100
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
ER+Q TV+ + K +E ++E F +AG V + + DR + + +G G++EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 276 PMAIALSGQL-LLGQPVMV-KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AI + + L G+P+ V K S KNL GA +++GNL +
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAHNKNL-------------DVGA---NIFIGNLDPEI 111
Query: 334 TETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392
E L F FG + + ++ D +TG KG+ F+ FA + + AA A+NG+ + R
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR 170
Query: 393 TLKVS 397
+ VS
Sbjct: 171 PITVS 175
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 313 ATGPYGAI--DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
A GP D +YVG L ++E L +LF GPV +P D TGQ +G+GFV+F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 410
E A A +N +++ G+ ++V+ + H D A
Sbjct: 62 LSEEDADYAIKIMN-MIKLYGKPIRVNKASAHNKNLDVGA 100
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 171 (65.3 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + ++ E FS+ GK V+++ D S +S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 150 (57.9 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 50/185 (27%), Positives = 83/185 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + LR+L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDENLREL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D +G+ KGFGFV + + E A A +NGK E+ G+++ V
Sbjct: 211 FSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSIFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 132 (51.5 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 43/156 (27%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQEAANKAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 50 (22.7 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 41 (19.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMH 566
+F E+ + + E S++G+ + V + +S GF ++ +E E A A M+
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 43/156 (27%), Positives = 75/156 (48%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ 289
+ TE +YE FS AG + +R+ D+ +RRS G Y+ + + A+ L+ ++ G+
Sbjct: 12 EVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGR 71
Query: 290 PVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVE 349
PV + S+ + +L +S +++ NL + L +F FG +
Sbjct: 72 PVRIMWSQRDPSLRKSGVG--------------NVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 350 LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385
++ D E G KG+GFV F + E A+ A +NG
Sbjct: 118 SCKVACD-EKGP-KGYGFVHFQKQESAERAIDVMNG 151
Score = 109 (43.4 bits), Expect = 0.00073, P = 0.00073
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH +TE L + F P GP+ +++ D T + G+ +V + Q AK A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 384 NGKLEIVGRTLKV 396
N + I GR +++
Sbjct: 64 NFDV-IKGRPVRI 75
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
K+YVG+L +++T +L+ F +G +E +L +D ETG+ KGF F+ + + A+ A S
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
NG +++ GR ++V+ ++ G
Sbjct: 79 ANG-IDLQGRKIRVNIARENTG 99
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
K+YVG+L +++T +L+ F +G +E +L +D ETG+ KGF F+ + + A+ A S
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
NG +++ GR ++V+ ++ G
Sbjct: 79 ANG-IDLQGRKIRVNIARENTG 99
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+D VF + + T D+ F+ G++ D R++ D + +SKG G++ F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 278 AIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATGPYGAIDRKLYVGNL 329
AI + GQ L G+ + KP A K+ +SNT + + +Y G +
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
+TE +R+ F PFG + ++I KG+ FV+F E A A ++NG I
Sbjct: 222 TSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 390 VGRTLK 395
G +K
Sbjct: 275 EGHVVK 280
Score = 158 (60.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 43/182 (23%), Positives = 91/182 (50%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
+T++ + TE + + FS+ G ++ ++IMD + + ++EF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 281 -LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQL 338
++G+ ++G+ V V + + Q ++ T + D ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398
+ F PFG + ++ D+ TG+ KG+GFV F A+ A + G+ + GR ++ +
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQIRTNW 181
Query: 399 VT 400
T
Sbjct: 182 AT 183
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 530 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 561
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 163 (62.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+D VF + + T D+ F+ G++ D R++ D + +SKG G++ F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 278 AIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATGPYGAIDRKLYVGNL 329
AI + GQ L G+ + KP A K+ +SNT + + +Y G +
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGV 221
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
+TE +R+ F PFG + ++I KG+ FV+F+ E A A ++NG I
Sbjct: 222 TSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTT-I 274
Query: 390 VGRTLK 395
G +K
Sbjct: 275 EGHVVK 280
Score = 158 (60.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 43/182 (23%), Positives = 91/182 (50%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
+T++ + TE + + FS+ G ++ ++IMD + + ++EF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 281 -LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQL 338
++G+ ++G+ V V + + Q ++ T + D ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398
+ F PFG + ++ D+ TG+ KG+GFV F A+ A + G+ + GR ++ +
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQIRTNW 181
Query: 399 VT 400
T
Sbjct: 182 AT 183
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 530 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 561
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFSSHESAAHA 265
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 161 (61.7 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+D VF + + T D+ F+ G++ D R++ D + +SKG G++ F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 278 AIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATGPYGAIDRKLYVGNL 329
AI + GQ L G+ + KP A K+ +SNT + + +Y G +
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 330 HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389
+TE +R+ F PFG + ++I KG+ FV+F E A A ++NG I
Sbjct: 222 TSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 390 VGRTLK 395
G +K
Sbjct: 275 EGHVVK 280
Score = 158 (60.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 43/182 (23%), Positives = 91/182 (50%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
+T++ + TE + + FS+ G ++ ++IMD + + ++EF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 281 -LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQL 338
++G+ ++G+ V V + + Q ++ T + D ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398
+ F PFG + ++ D+ TG+ KG+GFV F A+ A + G+ + GR ++ +
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQIRTNW 181
Query: 399 VT 400
T
Sbjct: 182 AT 183
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 530 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 561
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 167 (63.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 51/186 (27%), Positives = 90/186 (48%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D + S+G G++ F + AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ + + G A +YV NLH ++ E +L+ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRR---EREVELGARAME-----FTNIYVKNLHVDVDEQRLQDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG + V++ D ++G +GFGFV F + E A+ A +NG+ E+ GR L V
Sbjct: 211 FSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGR-EVSGRLLYVGRAQK 268
Query: 402 HVGTQD 407
V Q+
Sbjct: 269 RVERQN 274
Score = 156 (60.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 53/195 (27%), Positives = 96/195 (49%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K ++E E E + T ++ + + E+ + + FS+ GK+ V+++ D +S S
Sbjct: 173 FKSRRER-EVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHS 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 320
+G G++ F A+ ++G+ + G+ + V A+K + + N +
Sbjct: 231 RGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV--GRAQKRVERQNELKRRFEQMKQDRL 288
Query: 321 DR----KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
R LYV NL ++ + +LRK F P+G + ++ E G KGFGFV F+ E A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 146 (56.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 46/156 (29%), Positives = 73/156 (46%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG + +R+ D +RRS G YI F A+ ++ +++ GQP+
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPGLRKSGVG--------------NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G +GFGFV F E A+ A S +NG L
Sbjct: 129 KVVCD-EHGS-RGFGFVHFETHEAAQNAISTMNGML 162
Score = 118 (46.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 313 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372
A+GP G LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ ++ F Q
Sbjct: 3 ASGP-GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 373 LEHAKAAQSALNGKLEIVGRTLKV 396
A+ A +N ++ I G+ +++
Sbjct: 62 PADAERALDTMNFEV-IKGQPIRI 84
Score = 50 (22.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 505 NMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-RSAGFVYLRFESTEAAASAQR 563
N++ + D D + +Q D+ + K VK + D S GF ++ FE E A A
Sbjct: 192 NIYVKNLHVDVD-EQRLQ-DLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 564 AMHMRWFARRLI 575
M+ R + RL+
Sbjct: 250 NMNGREVSGRLL 261
Score = 46 (21.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 525 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S YG + V S GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 46 (21.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566
S +G + K + + S GF ++ FE+ EAA +A M+
Sbjct: 120 STFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMN 159
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 171 (65.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 53/180 (29%), Positives = 90/180 (50%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
R RT+ A + TE ++ E F A ++RL+ +SKG+ YIEF
Sbjct: 391 RAARTLLAKNLSFNITEDELKEVFEDA---LEIRLVSQDG--KSKGIAYIEFKSEADAEK 445
Query: 278 AIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ G + G+ V + + EK Q T T +G + L + NL ++ TE
Sbjct: 446 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGE----SKTLVLSNLSYSATEE 500
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K+EI GRT+++
Sbjct: 501 TLQEVFEK---ATFIKVPQN-QQGKSKGYAFIEFASFEDAKEALNSCN-KMEIEGRTIRL 555
Score = 96 (38.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 58/254 (22%), Positives = 95/254 (37%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
R L NL FN+TE +L+++FE + LV + G+ KG +++F A+
Sbjct: 394 RTLLAKNLSFNITEDELKEVFEDALEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLE 448
Query: 382 ALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTG 441
G EI GR++ + + Q+ K++ + +S+ L++ L +
Sbjct: 449 EKQGA-EIDGRSVSLYYTGEKGQRQERTGKNSTW----------SGESKTLVLSNLSYSA 497
Query: 442 IATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECL 501
++ A + NQQ S E G
Sbjct: 498 TEETLQEVFEKATFIKVPQ-NQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 556
Query: 502 LLKNMFDPAMETDPDFDLEIQG---DVEEECSKY---GRVK-HIYVDKR---SAGFVYLR 551
L P + P L ++G D EE K G V+ I D+ S GF ++
Sbjct: 557 LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVD 616
Query: 552 FESTEAAASAQRAM 565
F S E A +A+ AM
Sbjct: 617 FNSEEDAKAAKEAM 630
Score = 72 (30.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 253 IMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGG 311
++D + ++ GY++F + A+ L+G + G + + KP + V++
Sbjct: 339 VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAA----- 393
Query: 312 TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
R L NL FN+TE +L+++FE + LV
Sbjct: 394 ----------RTLLAKNLSFNITEDELKEVFEDALEIRLV 423
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 56/195 (28%), Positives = 95/195 (48%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + + E FS+ GK V+++ D S +S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKS 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 150 (57.9 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 50/185 (27%), Positives = 82/185 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDESLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D +G+ KGFGFV + + E A A +NGK EI G+ + V
Sbjct: 211 FSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKVIFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 131 (51.2 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 43/156 (27%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F E A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQEAADKAIEKMNGML 162
Score = 112 (44.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 50 (22.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 586 EAK 588
EA+
Sbjct: 180 EAE 182
Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+F E+ + ++E S++G+ + V + +S GF ++ +E E A A M+ +
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 571 ARRLI 575
+ ++I
Sbjct: 257 SGKVI 261
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 161 (61.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 47/164 (28%), Positives = 84/164 (51%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 273
A +R++ +F + T++D+ ++FSK G+V D L +D + RS+G G++ F +
Sbjct: 23 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 82
Query: 274 SVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
SV + L G+ + K ++A K P +K++VG L +
Sbjct: 83 SVDKVMDQKEHKLNGKVIDPKRAKAMKT------------KEPV----KKIFVGGLSPDT 126
Query: 334 TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
E ++R+ F FG VE ++LP+D +T + +GF F+ F + E K
Sbjct: 127 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 170
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 128 (50.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
DR L+VGNL +TE L +LF GPV V++P D + G+ K F FV F A
Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAM 67
Query: 381 SALNGKLEIVGRTLKVS--SVTDHVGTQDTA 409
+ LNG +++ GR +K+ S + H QD +
Sbjct: 68 NLLNG-IKLYGRPIKIQFRSGSSHA-PQDVS 96
Score = 104 (41.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 273
A E D RT+F + K TE ++E F +AG V V++ D++ + K ++ F +
Sbjct: 4 AAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEV 61
Query: 274 SVPMAI-ALSGQLLLGQPVMVK 294
SVP A+ L+G L G+P+ ++
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQ 83
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 554 STEAAASAQRAMHMRWFARRLISAIFMKPEDYE 586
ST ++ +R M + ++I F PE+++
Sbjct: 111 STSPSSRYERTMDNMTSSAQIIQRSFSSPENFQ 143
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 128 (50.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380
DR L+VGNL +TE L +LF GPV V++P D + G+ K F FV F A
Sbjct: 6 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAM 64
Query: 381 SALNGKLEIVGRTLKVS--SVTDHVGTQDTA 409
+ LNG +++ GR +K+ S + H QD +
Sbjct: 65 NLLNG-IKLYGRPIKIQFRSGSSHA-PQDVS 93
Score = 103 (41.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D RT+F + K TE ++E F +AG V V++ D++ + K ++ F +SVP
Sbjct: 4 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVP 61
Query: 277 MAI-ALSGQLLLGQPVMVK 294
A+ L+G L G+P+ ++
Sbjct: 62 YAMNLLNGIKLYGRPIKIQ 80
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 554 STEAAASAQRAMHMRWFARRLISAIFMKPEDYE 586
ST ++ +R M + ++I F PE+++
Sbjct: 108 STSPSSRYERTMDNMTSSAQIIQRSFSSPENFQ 140
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 40/94 (42%), Positives = 53/94 (56%)
Query: 305 SNTSAGGTATGPYGAID--RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQC 362
S +A T++ + + R LYVGNL + ET +R+LF G V V+L D TG+
Sbjct: 52 STNTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKR 111
Query: 363 KGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+GFGFV+ A + KA SALN E RTLKV
Sbjct: 112 RGFGFVEMASDDLDKAI-SALNDT-EFQQRTLKV 143
Score = 107 (42.7 bits), Expect = 0.00032, P = 0.00032
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIE 268
+ D RT++ +P +A E V E FS+ G V VRL+ D+++ + +G G++E
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVE 118
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 40/94 (42%), Positives = 53/94 (56%)
Query: 305 SNTSAGGTATGPYGAID--RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQC 362
S +A T++ + + R LYVGNL + ET +R+LF G V V+L D TG+
Sbjct: 52 STNTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKR 111
Query: 363 KGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+GFGFV+ A + KA SALN E RTLKV
Sbjct: 112 RGFGFVEMASDDLDKAI-SALNDT-EFQQRTLKV 143
Score = 107 (42.7 bits), Expect = 0.00032, P = 0.00032
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIE 268
+ D RT++ +P +A E V E FS+ G V VRL+ D+++ + +G G++E
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVE 118
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/198 (28%), Positives = 94/198 (47%)
Query: 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRL--IMDRNSRRSKGVGYI--EFYDVMS-VP 276
TVF MPL E+ V FS G + VR+ ++ N + +K V ++ + D S +
Sbjct: 144 TVFVGNMPLTMNEKSVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLT 203
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ + + + + ++ + ++++ + G+ +G D ++VGNL F +TE
Sbjct: 204 FYVKFGAEESVEKALKYNGTKLDDHVIRVDKV--GSKKKEFGK-DMAIFVGNLPFEITED 260
Query: 337 QLRKLFEP-FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395
L F GPVE V++ D +TG+ KGF FV F Q A S K+E R L+
Sbjct: 261 ALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALSMETIKME--KRDLR 318
Query: 396 VSSVTD--HVGTQDTAAK 411
++ V H+ TA K
Sbjct: 319 ITKVMKKGHLTKIQTAKK 336
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 159 (61.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 47/167 (28%), Positives = 80/167 (47%)
Query: 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAL 281
+++ + T+ +++ F + G V VR+ D +RRS G GY+ F + AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 282 SGQL-LLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRK 340
+ L G+P+ V S + ++ +S AG +++ NL ++ L
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSG--AGN------------IFIKNLDESIDHKALHD 142
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
F FG + ++ +D +GQ KG+GFVQ+A E A+ A LNG L
Sbjct: 143 TFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGML 188
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 52/180 (28%), Positives = 85/180 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
V+ + T+ D+ F + GK+ ++M +SKG G++ F + A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADDAARAVESL 275
Query: 282 SGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQ 337
+G + V K SE E L A + + + LYV NL ++++ +
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN--LYVKNLDPSISDEK 333
Query: 338 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397
L+++F PFG V ++ D G KG GFV FA E A A S L+GK+ I + L V+
Sbjct: 334 LKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKM-IESKPLYVA 391
Score = 140 (54.3 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 51/181 (28%), Positives = 86/181 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +++ FS G + ++ +D +S +SKG G++++ + S AI L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V P + + +++A T +YV NL + T+ L+
Sbjct: 185 NGMLLNDKQVYVGPFLRRQ---ERDSTANKTKF-------TNVYVKNLAESTTDDDLKNA 234
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG-KLE----IVGRTLKV 396
F +G + + D E G+ KGFGFV F + A A +LNG K + VGR K
Sbjct: 235 FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Query: 397 S 397
S
Sbjct: 294 S 294
Score = 128 (50.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 307 TSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFG 366
TS G TAT +G + LYVG+L FN+T++QL F G V V++ D+ T + G+G
Sbjct: 24 TSGGATAT-QFG--NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYG 80
Query: 367 FVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+V F + A A LN + + G+ ++V
Sbjct: 81 YVNFTNPQDAARAIQELN-YIPLYGKPIRV 109
Score = 54 (24.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 524 DVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMH 566
D++ +YG++ V K +S GF ++ FE+ + AA A +++
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/195 (28%), Positives = 95/195 (48%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + + E FS+ GK V+++ D S +S
Sbjct: 213 FKSRKER-EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKS 270
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ + A+ ++G+ + G+ + V K E + L +
Sbjct: 271 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 330
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 331 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 386
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 387 TKAVTEMNGR--IVG 399
Score = 150 (57.9 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 50/185 (27%), Positives = 82/185 (44%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 198
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N + + L++L
Sbjct: 199 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGEEVDDESLKEL 250
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG V++ D +G+ KGFGFV + + E A A +NGK EI G+ + V
Sbjct: 251 FSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKVIFVGRAQK 308
Query: 402 HVGTQ 406
V Q
Sbjct: 309 KVERQ 313
Score = 57 (25.1 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 350 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 409
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 410 RKEERKA 416
>UNIPROTKB|F1NHX3 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
"integral to nuclear inner membrane" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00590059
Ensembl:ENSGALT00000016052 ArrayExpress:F1NHX3 Uniprot:F1NHX3
Length = 406
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 554
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 276 SLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 335
Query: 555 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 336 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 370
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 239 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV---- 293
+ FSK GK V+++ D +S +SKG G++ F + A+ ++G+ + GQ + V
Sbjct: 208 DVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 266
Query: 294 KPSEAEKNLVQS-NTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQ 352
K E + L Q G G KLY+ NL + + +LR F FG + V+
Sbjct: 267 KKVERQAELKQMFEQLKRERIRGCQGV---KLYIKNLDDTIDDEKLRNEFSSFGSISRVK 323
Query: 353 LPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402
+ E GQ KGFG + F+ E A A + +NG++ + + L ++ H
Sbjct: 324 VMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRI-LGSKPLSIALAQRH 370
Score = 154 (59.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 51/185 (27%), Positives = 85/185 (45%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +YE FS GK+ +++ D + SKG ++ F + + AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G+LL G V V + K+ S T +Y+ N +M + +L+ +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN--------VYIKNFGGDMDDERLKDV 209
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F +G V++ D +G+ KGFGFV F E AK A +NG+ +I G+ + V
Sbjct: 210 FSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGR-DINGQLIFVGRAQK 267
Query: 402 HVGTQ 406
V Q
Sbjct: 268 KVERQ 272
Score = 108 (43.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F GPV +++ D T + G+ +V F QL A+ A +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 384 NGKLEIVGRTLKV 396
N + I G+++++
Sbjct: 72 NFDI-IKGKSIRL 83
Score = 106 (42.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 38/156 (24%), Positives = 69/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE ++ FS G V +R+ D+ +RRS G Y+ F + A+ ++ ++ G+ +
Sbjct: 22 TEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSI 81
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + L +S +++ NL ++ L + F FG +
Sbjct: 82 RLMWSQRDAYLRRSGIG--------------NVFIKNLDKSIDNKTLYEHFSAFGKILSS 127
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D + G KG+ FV F A A +NGKL
Sbjct: 128 KVMSD-DQGS-KGYAFVHFQNQSAADRAIEEMNGKL 161
Score = 62 (26.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 523 GDVEEE-----CSKYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMHMRWFARR 573
GD+++E SKYG+ + V D +S GF ++ F+S EAA A M+ R +
Sbjct: 199 GDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ 258
Query: 574 LI 575
LI
Sbjct: 259 LI 260
Score = 51 (23.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 525 VEEECSKYG---RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 576
+ E S +G RVK + + +S GF + F S E A A M+ R + +S
Sbjct: 309 LRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS 363
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 165 (63.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 52/185 (28%), Positives = 87/185 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D + S+G G++ F + AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAITTM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ + + G A +YV NLH ++ E L+ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRR---EREVELGARAME-----FTNIYVKNLHVDVDEQGLQDL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F FG + V++ D ++G +GFGFV F + E A+ A +NGK E+ GR L V
Sbjct: 211 FSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGK-EVSGRLLYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 RVERQ 273
Score = 155 (59.6 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 50/191 (26%), Positives = 94/191 (49%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K ++E E E + T ++ + + E+ + + FS+ GK+ V+++ D +S S
Sbjct: 173 FKSRRER-EVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHS 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
+G G++ F A+ ++G+ + G+ + V K E + L +
Sbjct: 231 RGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL ++ + +LRK F P+G + ++ E G KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 141 (54.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 44/156 (28%), Positives = 73/156 (46%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG + +R+ D +RRS G YI F A+ ++ +++ GQP+
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPGLRKSGVG--------------NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D + G +GFGFV F E A+ A + +NG L
Sbjct: 129 KVVCD-DHGS-RGFGFVHFETHEAAQQAITTMNGML 162
Score = 118 (46.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 313 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372
A+GP G LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ ++ F Q
Sbjct: 3 ASGP-GFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 373 LEHAKAAQSALNGKLEIVGRTLKV 396
A+ A +N ++ I G+ +++
Sbjct: 62 PADAERALDTMNFEV-IKGQPIRI 84
Score = 51 (23.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 518 DLEIQGDVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWFARR 573
D++ QG +++ S++G++ + V + S GF ++ F+ E A A M+ + + R
Sbjct: 201 DVDEQG-LQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGR 259
Query: 574 LI 575
L+
Sbjct: 260 LL 261
Score = 49 (22.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566
S +G + K + D S GF ++ FE+ EAA A M+
Sbjct: 120 STFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMN 159
Score = 47 (21.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 525 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S YG + V S GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 145 (56.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
+ LYVGNL + E+ +++LF FG V V+L D TG+ +GFGFV A + A+ A
Sbjct: 64 KTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ-AQTAID 122
Query: 382 ALNGKLEIVGRTLKVSSVTDHVGTQDTA 409
ALN K E + RTLKV D ++ A
Sbjct: 123 ALNEK-EYMQRTLKVRIANDPKSDEEMA 149
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 145 (56.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
+ LYVGNL + E+ +++LF FG V V+L D TG+ +GFGFV A + A+ A
Sbjct: 64 KTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ-AQTAID 122
Query: 382 ALNGKLEIVGRTLKVSSVTDHVGTQDTA 409
ALN K E + RTLKV D ++ A
Sbjct: 123 ALNEK-EYMQRTLKVRIANDPKSDEEMA 149
>UNIPROTKB|F1NZN4 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
"integral to nuclear inner membrane" evidence=IEA] [GO:0030512
"negative regulation of transforming growth factor beta receptor
signaling pathway" evidence=IEA] [GO:0030514 "negative regulation
of BMP signaling pathway" evidence=IEA] [GO:0032926 "negative
regulation of activin receptor signaling pathway" evidence=IEA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926 GO:GO:0030512
GO:GO:0030514 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00822008
Ensembl:ENSGALT00000038639 OMA:VAGKHEC ArrayExpress:F1NZN4
Uniprot:F1NZN4
Length = 436
Score = 166 (63.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 554
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 306 SLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 365
Query: 555 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 366 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 400
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 164 (62.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 52/173 (30%), Positives = 88/173 (50%)
Query: 217 ERDQR-TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E+D+ TV+ + + ++ V+E +AG++ +V L DR ++ +G G++EF
Sbjct: 8 EQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDA 67
Query: 276 PMAIAL-SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMT 334
A + +G L G+P+ V + A+K Q + G +L+VGNL +T
Sbjct: 68 EYASRIMNGIRLYGKPIRVNKASADK---QKSVEIGA-----------ELFVGNLDPMVT 113
Query: 335 ETQLRKLFEPFGP-VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
E L F FG V L ++ D ++ KG+GFV FA E + AA + +NG+
Sbjct: 114 EQVLYDTFSRFGNLVNLPKVARD-DSNLSKGYGFVSFADFESSDAAIANMNGQ 165
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 164 (62.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 43/155 (27%), Positives = 80/155 (51%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E++Q R +F + + TE + ++ + GK+ D ++ D S+RS+G G++ F + V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +V+P A + + G T +KL+VG + + E
Sbjct: 76 DAAMAARPHSIDGR--VVEPKRAVAR--EESGKPGAHVTV------KKLFVGGIKEDTEE 125
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR FE +G V+ +++ D ++G+ +GFGF F
Sbjct: 126 HHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTF 160
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 153 (58.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 45/186 (24%), Positives = 92/186 (49%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
+ DQ RT++ + TE + + FS+ G + ++I+D + ++EFY+
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTG--NDPYCFVEFYENRHA 61
Query: 276 PMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMT 334
A+A ++G+ +LG+ + V N + +S + + ++VG+L ++
Sbjct: 62 AAALAAMNGRKILGKDMKV-------NWASTPSSQKKDTSNHF-----HVFVGDLSPEIS 109
Query: 335 ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394
+R F PFG + ++ D+ TG+ KG+GF+ F A++A +NG+ + GR +
Sbjct: 110 TDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQW-LGGRQI 168
Query: 395 KVSSVT 400
+ + T
Sbjct: 169 RTNWAT 174
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 47/181 (25%), Positives = 84/181 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + + DV F+ GK+ D R++ D + +SKG G+I F + AI +
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK-------LYVGNLHFNMT 334
+GQ L G+ + + + + +SN + Y + + +Y G + ++
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLS 218
Query: 335 ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394
+ +R+ F PFG + ++I KG+ FV+F E A A ++NG I G T+
Sbjct: 219 DQLMRQTFSPFGQI------MEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTC-IEGHTV 271
Query: 395 K 395
K
Sbjct: 272 K 272
Score = 50 (22.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 530 SKYGRVKHIYVDKRSAGFVYLRFESTEAAASA 561
S +G++ I V G+ ++RF+S E AA A
Sbjct: 227 SPFGQIMEIRVFPEK-GYSFVRFDSHEGAAHA 257
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 164 (62.8 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 48/178 (26%), Positives = 86/178 (48%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 282
+F + T+ + +FS+ G+V D ++ D+ + +S+G G+++F D V +A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 283 GQLLLGQPVMVKPSEAE-KNLVQSNTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLR 339
L G+ + KP +S G P R K++VG + N ET+L+
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELK 131
Query: 340 KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL-EIVGRTLKV 396
+ F FG V V + D E + +GFGF+ F E ++ A+N +I+G+ ++V
Sbjct: 132 EYFNRFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQAVNMHFHDIMGKKVEV 186
Score = 124 (48.7 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 30/105 (28%), Positives = 52/105 (49%)
Query: 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 270
EP + R + +F +P E ++ E+F++ G V +V +I D +R +G G+I F
Sbjct: 105 EPRTENSRSNK-IFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFE 163
Query: 271 DVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG 315
D SV A+ + ++G+ V VK +E + Q+ G G
Sbjct: 164 DEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWG 208
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 47/161 (29%), Positives = 82/161 (50%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
E D+ +F + T++D+ ++FSK G+V D L +D + RS+G G++ F + SV
Sbjct: 41 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ L G+ + K ++A K P +K++VG L + E
Sbjct: 101 KVMDQKEHKLNGKVIDPKRAKAMKT------------KEPV----KKIFVGGLSPDTPEE 144
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
++R+ F FG VE ++LP+D +T + +GF F+ F + E K
Sbjct: 145 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 185
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 163 (62.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 43/155 (27%), Positives = 83/155 (53%)
Query: 217 ERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
E +Q R +F + + TE + +++ + G++ D ++ D S+RS+G G++ F V V
Sbjct: 4 EAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEV 63
Query: 276 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
A+A + G+ +++P A A G G + + +KL+VG + + E
Sbjct: 64 DAAMAARPHSIDGR--VLEPRRAIPR------EASGQR-GAHWTL-KKLFVGGIKEDTEE 113
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370
LR+ FE +G ++ +++ D ++G+ +GFGFV F
Sbjct: 114 HHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTF 148
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 161 (61.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/191 (27%), Positives = 90/191 (47%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + T V+ + + + FSK G +R++ D N + S
Sbjct: 173 FKSRKER-EAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGK-S 230
Query: 262 KGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
+G G++ F A+ ++G+ + G+ + V K E + L +
Sbjct: 231 RGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LYV NL + + +LRK F PFG + ++ +D G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKL 387
A + +NG++
Sbjct: 347 TKAVTEMNGRI 357
Score = 156 (60.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 48/185 (25%), Positives = 85/185 (45%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
+F + + +Y+ FS G + +++ D N SKG G++ F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L+ +
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FTNVYIKNFGEDMDDDKLKDI 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F +G +++ D E G+ +GFGFV F + E A+ A +NGK E+ G+ + V
Sbjct: 211 FSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGK-EMNGKLIYVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 145 (56.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 47/179 (26%), Positives = 80/179 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G Y+ F
Sbjct: 1 MNPSA-PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNF 59
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 328
A+ ++ ++ G+PV + S+ + +L +S +++ N
Sbjct: 60 QQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG--------------NIFIKN 105
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L ++ L F FG + ++ D E G KG+GFV F E A+ A +NG L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKMNGML 162
Score = 56 (24.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 525 VEEECSKYGRVKH--IYVDK-RSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + + +D RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 49 (22.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+F ++ D +++ SKYG I V D+ +S GF ++ FE E A A M+ +
Sbjct: 197 NFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEM 256
Query: 571 ARRLI 575
+LI
Sbjct: 257 NGKLI 261
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 161 (61.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 49/181 (27%), Positives = 85/181 (46%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
+ +R V+ + + ++ EF + G V + ++ N SKG IE+
Sbjct: 74 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEYSTAEEART 132
Query: 278 AI-ALSGQLLLGQPVMVKPS-EAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTE 335
AI LS Q +G+ V ++ E S+ S ++ G DR+L+VGNL +N+
Sbjct: 133 AIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRW 192
Query: 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395
L+ LF G V + ++ E G+ +G G V + ++ A A L+ + +GRTL+
Sbjct: 193 QDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNT-DFMGRTLE 250
Query: 396 V 396
V
Sbjct: 251 V 251
Score = 46 (21.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-RSAGFVYLRFE 553
G S+C+ + N+ P +D + L++ D+ R + Y RS GF ++FE
Sbjct: 306 GPCSDCIYVGNL--PWATSDRNL-LDLFTDIGSVI----RARIAYEPTGRSKGFGVVQFE 358
Query: 554 S-TEAAASAQRAMHMRWFARRL 574
+ +AA+S ++ R+ R L
Sbjct: 359 NENDAASSIEKLNGYRYGGRPL 380
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 158 (60.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 52/176 (29%), Positives = 85/176 (48%)
Query: 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR--NSRRSKGVGYIEFYDVM 273
P+ D +F Q+P E+D+ E F + G V ++ ++ DR N +SKG ++ FY
Sbjct: 11 PDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK 70
Query: 274 SVPMAI-ALSGQLLL-GQ--PVMVKPSEAEKNLVQSNTSAGGTATGPYGAI-DRKLYVGN 328
+ A AL +L G P+ +KP+++EKN A+ DRKL++G
Sbjct: 71 AALEAQNALHNMKILPGMHHPIQMKPADSEKN----------------NAVEDRKLFIGM 114
Query: 329 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 384
+ E +R +F PFG +E ++ L G +G FV F A+ A A++
Sbjct: 115 ISKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 50 (22.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 18/92 (19%), Positives = 37/92 (40%)
Query: 376 AKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQ 435
A AAQ+ +G + + +S +T G+ +++ S+ AL + A
Sbjct: 269 ASAAQNTPSGTAALTSSSSPLSVLTSSAGSSPSSSSSSSVNPMASLG-ALQTLAGATAGL 327
Query: 436 KLDRTGIATSIAGSLGVAPAVNGSAVNQQAIS 467
+ ++ G LG NG+ +A++
Sbjct: 328 NVSSLAGMAALNGGLGSGGLSNGTGSTMEALT 359
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 124 (48.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
K++VG + TE ++ F FG V L +D +TG+ +GFGFV F + A ++A
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTF---DSEAAVEAA 251
Query: 383 LNGKLEIVGRTLKVSSVTDHVGTQD 407
L+ LEI+G+T++V +D
Sbjct: 252 LSRPLEILGKTIEVKKAQPRGNLRD 276
Score = 118 (46.6 bits), Expect = 0.00059, P = 0.00059
Identities = 27/99 (27%), Positives = 58/99 (58%)
Query: 208 EVVEPEADPERDQRT----VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
++++P+ RD++ +F + +ATE+D +FF + G+V D L++D+++ R +G
Sbjct: 177 KIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRG 236
Query: 264 VGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL 302
G++ F +V A++ ++L G+ + VK ++ NL
Sbjct: 237 FGFVTFDSEAAVEAALSRPLEIL-GKTIEVKKAQPRGNL 274
Score = 89 (36.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/98 (24%), Positives = 50/98 (51%)
Query: 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 270
EP+ ++ +F + + T++ + E+FS+ G+V++ ++ D + RS+G G++ F
Sbjct: 100 EPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFK 159
Query: 271 DVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTS 308
D +V + + L G+ ++ P A Q TS
Sbjct: 160 DPKTVN-TVMVKEHYLDGK--IIDPKRAIPRDEQEKTS 194
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 144 (55.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 46/170 (27%), Positives = 79/170 (46%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
D +T + +P T+ ++ F G++ +L+ D+ + +S G G++ + D
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 278 AI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
AI L+G L Q +K S A S+ S D LYV L MT+
Sbjct: 96 AINTLNGLRL--QTKTIKVSYARP----SSASIR----------DANLYVSGLPKTMTQK 139
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
+L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
L V L NMT+ +L+ LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 384 NGKLEIVGRTLKVS 397
NG L + +T+KVS
Sbjct: 101 NG-LRLQTKTIKVS 113
Score = 48 (22.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 522 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 566
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 144 (55.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 383 LNGKLEIVGRTLKVSSVTDHVG 404
NG+ + GR + V DH G
Sbjct: 67 TNGE-SLDGRQIHV----DHAG 83
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 161 (61.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 51/187 (27%), Positives = 88/187 (47%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
VF + + +Y+ FS G + +++ D + S+G G++ F + AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 282 SGQLLLGQPVMVK--PSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLR 339
+G LL + V V S E+ L G + +Y+ N +M + +LR
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEY------GAKVMEF----TNVYIKNFGEDMDDKRLR 208
Query: 340 KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399
++F FG V++ +D +TG+ +GFGFV + E A+ A S +NGK E+ GR + V
Sbjct: 209 EIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGK-EVNGRMIYVGRA 266
Query: 400 TDHVGTQ 406
+ Q
Sbjct: 267 QKRIERQ 273
Score = 151 (58.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 44/159 (27%), Positives = 81/159 (50%)
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVM 292
++ + E FS G V+++MD ++ RS+G G++ + + A++ ++G+ + G+ +
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIY 262
Query: 293 V----KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPV 348
V K E + L + Y ++ LYV NL + + +LRK F P+G +
Sbjct: 263 VGRAQKRIERQGELKRKFEQIKQERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTI 320
Query: 349 ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ E G KGFGFV F+ E A A + +NG++
Sbjct: 321 TSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 135 (52.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG + +R+ D +RRS G YI F A+ ++ +++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPGLRKSGVG--------------NVFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G +G+GFV F E A A +NG L
Sbjct: 129 KVVCD-EHGS-RGYGFVHFETQEAANRAIQTMNGML 162
Score = 120 (47.3 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 313 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372
ATG G LYVG+LH ++TE L + F P GP+ +++ DI T + G+ ++ F Q
Sbjct: 3 ATGA-GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQ 61
Query: 373 LEHAKAAQSALNGKLEIVGRTLKV 396
A+ A +N ++ I GR +++
Sbjct: 62 PADAERALDTMNFEV-IKGRPIRI 84
Score = 50 (22.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 516 DFDLEIQGD-VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFA 571
+ D I D + +E S YG + V S GF ++ F S E A A M+ R +
Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 572 RR-LISAIFMKPEDYEA 587
+ L A+ + E+ +A
Sbjct: 360 TKPLYVALAQRKEERKA 376
Score = 44 (20.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 530 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 585
S +G + K + + S G+ ++ FE+ EAA A + M+ M R++ F +
Sbjct: 120 SAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
Query: 586 EAKF 589
E ++
Sbjct: 180 ELEY 183
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 166 (63.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 53/188 (28%), Positives = 95/188 (50%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
+ D +F + E + E+FS G+V + ++ DR + R++G G++ F D
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Query: 277 MAIA----LSGQLLLGQPVMVKPSEAEKNLV-QSNTSA-GGTATGPYGAIDRKLYVGNLH 330
+ I + G+L+ + + P + ++N+V +SN+S+ G+ GP G RK++VG L
Sbjct: 62 IVITEKHNIDGRLVEAKKAV--PRD-DQNMVNRSNSSSIQGSPGGP-GRT-RKIFVGGLP 116
Query: 331 FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ----SALNGK 386
++TE+ + FE FG V + D T + +GFGF+ + E + LNGK
Sbjct: 117 SSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGK 176
Query: 387 LEIVGRTL 394
+ V R +
Sbjct: 177 MVEVKRAV 184
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 163 (62.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 41/140 (29%), Positives = 76/140 (54%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQP 290
+ TE+ + ++ + GK+ D ++ D +++RS+G G++ F V V A+A + G+
Sbjct: 31 RTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAARPHSVDGK- 89
Query: 291 VMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL 350
+V P A V S G + A+ +KL+VG + + E LR FE +G ++
Sbjct: 90 -VVDPKRA----VAREESE---KPGAHLAV-KKLFVGGIKEDTEEHHLRDYFEKYGKIDT 140
Query: 351 VQLPLDIETGQCKGFGFVQF 370
+++ D ++G+ +GFGFV F
Sbjct: 141 IEIITDRQSGKKRGFGFVTF 160
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 136 (52.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 43/142 (30%), Positives = 71/142 (50%)
Query: 256 RNSRR--SKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGT 312
+NS + S G G++EF +AI+ L G +L G + +K S + + TSA
Sbjct: 655 KNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQG----TGTSASSI 710
Query: 313 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372
+ K+ + NL F T L +LF FG ++ V++P + +GF FV+F
Sbjct: 711 KKSGKSS---KIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNL 766
Query: 373 LEHAKAAQSALNGKLEIVGRTL 394
++ A+ A S L G + ++GR L
Sbjct: 767 MKEAETAMSQLEG-VHLLGRRL 787
Score = 121 (47.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
+L++ N+ + +E R LF +G +E V + +D TG+ KGF +VQF + E A A +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 383 LNGKLEIVGRTLKV 396
L+ ++ GR L +
Sbjct: 371 LDKQI-FQGRLLHI 383
Score = 94 (38.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 211 EPEADPERD-----QRT--VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
EPE PE + T +F + +A+E D FS+ G + +V + +D + +SKG
Sbjct: 293 EPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKG 352
Query: 264 VGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKN 301
Y++F A +L Q+ G+ + + P++ +K+
Sbjct: 353 FLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKKKD 391
Score = 82 (33.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 324 LYVGNLHFNMTETQLRKLFEPF-G-PVELVQLPLDIE-TGQC--KGFGFVQFAQLEHAKA 378
++V NL+F T L LF+P G V V+ D + +G+ GFGFV+F E A
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678
Query: 379 AQSALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKSA 413
A S L+G + + G L++ S GT ++ K +
Sbjct: 679 AISTLDGHV-LDGHKLQLKLSHKQGTGTSASSIKKS 713
Score = 80 (33.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRN--SRRSKGVGY 266
+P TE + EFFSK G V DV+L+ RN SR+ +GY
Sbjct: 9 LPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGY 49
>UNIPROTKB|J9NVV1 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AAEX03007007 Ensembl:ENSCAFT00000048719 Uniprot:J9NVV1
Length = 615
Score = 167 (63.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 554
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 485 SLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 544
Query: 555 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 545 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 579
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 163 (62.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 52/171 (30%), Positives = 82/171 (47%)
Query: 220 QRTVFAYQMPLKATERD--VYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
Q T Y L AT D ++E F++AG+V VR+ D +RRS G GY+ +
Sbjct: 42 QGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASR 101
Query: 278 AI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
A+ L+ L G+ + V S + +L +S +++ NL ++
Sbjct: 102 ALNELNFMALNGRAIRVMYSVRDPSLRKSGVG--------------NIFIKNLDKSIDHK 147
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
L + F FGP+ ++ +D +GQ KG+GFVQ+ E A+ A LNG L
Sbjct: 148 ALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGML 197
Score = 148 (57.2 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 56/194 (28%), Positives = 93/194 (47%)
Query: 213 EADPERDQ---RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
+ DP ++ V+ + ++ ++ + F + G V +IM +SKG G++ F
Sbjct: 213 QRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNF 271
Query: 270 YDVMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQS-NTSAGGTATGPYGAIDRK 323
+ A+ AL+G+ + V K SE E L Q S A G+
Sbjct: 272 ENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGS---N 328
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYV NL ++T+ +LR+ F PFG + ++ D +G +G GFV F+ E A A + +
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEM 387
Query: 384 NGKLEIVGRTLKVS 397
NGK+ IV + L V+
Sbjct: 388 NGKM-IVTKPLYVA 400
Score = 137 (53.3 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 48/165 (29%), Positives = 76/165 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 281
+F + + ++E FS G + ++ +D S +SKG G++++ + AI L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V P + S T +YV NL ++++ +L K+
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFT----------NVYVKNLSESLSDEELNKV 243
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386
F FG + D E G+ KGFGFV F + A A ALNGK
Sbjct: 244 FGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGK 287
Score = 114 (45.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 304 QSNTSAGGTATGPYGAIDR---KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETG 360
++ +A G A GA + LYVG+L +T++QL + F G V V++ D+ T
Sbjct: 24 EAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTR 83
Query: 361 QCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS-SVTD 401
+ G+G+V +A + A A + LN + + GR ++V SV D
Sbjct: 84 RSLGYGYVNYATPQDASRALNELNF-MALNGRAIRVMYSVRD 124
Score = 48 (22.0 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 543 RSAGFVYLRFESTEAAASAQRAMHMRWF 570
+S GF ++ FE+++ AA A A++ + F
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTF 289
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 167 (63.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 58/195 (29%), Positives = 93/195 (47%)
Query: 203 YKEKKEVVEPEADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+K +KE E E + + T V+ + + E FSK GK V+++ D + S
Sbjct: 173 FKSRKER-EAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGK-S 230
Query: 262 KGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGP 316
KG G++ F A+ ++G+ + G+ V V K E + L +
Sbjct: 231 KGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISR 290
Query: 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376
Y ++ LY+ NL + + +LRK F PFG + ++ L E G+ KGFGFV F+ E A
Sbjct: 291 YQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 377 KAAQSALNGKLEIVG 391
A + +NG+ IVG
Sbjct: 347 TKAVTEMNGR--IVG 359
Score = 154 (59.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 51/185 (27%), Positives = 84/185 (45%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 281
VF + + +Y+ FS G + +++ D N SKG ++ F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341
+G LL + V V ++ K + G A +Y+ N +M + +L++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRK---EREAELGAKAKE-----FTNVYIKNFGDDMDDERLKEL 210
Query: 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401
F +G V++ D TG+ KGFGFV F + E A A +NGK +I G+ + V
Sbjct: 211 FSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGK-DINGKMVFVGRAQK 268
Query: 402 HVGTQ 406
V Q
Sbjct: 269 KVERQ 273
Score = 128 (50.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 42/156 (26%), Positives = 70/156 (44%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291
TE +YE FS AG V +R+ D +RRS G Y+ F A+ ++ ++ G+P+
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 292 MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351
+ S+ + +L +S +++ NL ++ L F FG +
Sbjct: 83 RIMWSQRDPSLRKSGVG--------------NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
++ D E G KG+ FV F + A A +NG L
Sbjct: 129 KVVCD-ENGS-KGYAFVHFETQDAADRAIEKMNGML 162
Score = 110 (43.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
LYVG+LH ++TE L + F P GPV +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 384 NGKLEIVGRTLKV 396
N + I G+ +++
Sbjct: 73 NFDV-IKGKPIRI 84
Score = 57 (25.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 525 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 580
+ +E S +G + K + D RS GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 581 KPEDYEA 587
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 49 (22.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 525 VEEECSKYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMH 566
++E SKYG+ + V D +S GF ++ FE E A A M+
Sbjct: 207 LKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 161 (61.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 47/164 (28%), Positives = 84/164 (51%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 273
A +R++ +F + T++D+ ++FSK G+V D L +D + RS+G G++ F +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 274 SVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
SV + L G+ + K ++A K P +K++VG L +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKT------------KEPV----KKIFVGGLSPDT 193
Query: 334 TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377
E ++R+ F FG VE ++LP+D +T + +GF F+ F + E K
Sbjct: 194 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 237
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L+F TE L ++F +G V V + D E+ + +GFGFV F E AK A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 114 (45.2 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 31/101 (30%), Positives = 55/101 (54%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + + TE + + FSK G+V +V ++ DR S+RS+G G++ F + A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 279 I-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG 318
+ A++G+ + G+ + V +A K+ SN GG G G
Sbjct: 64 MMAMNGKSVDGRQIRV--DQAGKS---SNDRRGGYRGGSSG 99
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 107 (42.7 bits), Expect = 0.00060, P = 0.00060
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + E+ + + FSK G++ +V ++ DR ++RS+G G++ F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 279 I-ALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATG 315
+ A++G+ + G+ + V + ++ N +S GG+A G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGG 100
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 107 (42.7 bits), Expect = 0.00090, P = 0.00090
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + E+ + + FSK G++ +V ++ DR ++RS+G G++ F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 279 I-ALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATG 315
+ A++G+ + G+ + V + ++ N +S GG+A G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGG 100
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + E+ + + FSK G++ +V ++ DR ++RS+G G++ F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 279 I-ALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATG 315
+ A++G+ + G+ + V + ++ N +S GG+A G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGG 100
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 107 (42.7 bits), Expect = 0.00030, P = 0.00030
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + E+ + + FSK G++ +V ++ DR ++RS+G G++ F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 279 I-ALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATG 315
+ A++G+ + G+ + V + ++ N +S GG+A G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGG 100
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 107 (42.7 bits), Expect = 0.00051, P = 0.00051
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + E+ + + FSK G++ +V ++ DR ++RS+G G++ F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 279 I-ALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATG 315
+ A++G+ + G+ + V + ++ N +S GG+A G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGG 100
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 107 (42.7 bits), Expect = 0.00065, P = 0.00065
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + E+ + + FSK G++ +V ++ DR ++RS+G G++ F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 279 I-ALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATG 315
+ A++G+ + G+ + V + ++ N +S GG+A G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGG 100
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 383 LNGKLEIVGRTLKV 396
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 107 (42.7 bits), Expect = 0.00060, P = 0.00060
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
D+ +F + E+ + + FSK G++ +V ++ DR ++RS+G G++ F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 279 I-ALSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGTATG 315
+ A++G+ + G+ + V + ++ N +S GG+A G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGG 100
WARNING: HSPs involving 962 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 591 374 0.00087 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1212
No. of states in DFA: 598 (64 KB)
Total size of DFA: 208 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.03u 0.07s 27.10t Elapsed: 00:00:03
Total cpu time: 27.08u 0.07s 27.15t Elapsed: 00:00:03
Start: Mon May 20 16:24:18 2013 End: Mon May 20 16:24:21 2013
WARNINGS ISSUED: 2