BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007742
(591 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 265 bits (677), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 169/395 (42%), Positives = 229/395 (57%), Gaps = 27/395 (6%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYG 318
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN +N G+A GP
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA-GPM- 250
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK
Sbjct: 251 ----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKK 306
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDG--GGLALNAQSRALLMQK 436
A LNG E+ GR +KV VT+ D ++ S+ D D+ G+ L R LM +
Sbjct: 307 ALEQLNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMAR 362
Query: 437 L-DRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIG 495
L + TG L + PA + +++ V + T AA
Sbjct: 363 LAEGTG--------LQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQP 414
Query: 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 554
++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S
Sbjct: 415 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS 474
Query: 555 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 475 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 509
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 233/404 (57%), Gaps = 39/404 (9%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYG 318
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN +N G+A GP
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA-GPM- 250
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK
Sbjct: 251 ----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKK 306
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDG--GGLALNAQSRALLMQK 436
A LNG E+ GR +KV VT+ D ++ S+ D D+ G+ L R LM +
Sbjct: 307 ALEQLNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMAR 362
Query: 437 L-DRTGI--------ATSIAGSLGVAPAVNGSAVNQQAISLPV-VGQPAVPVPAVTAPVI 486
L + TG+ A ++GSL S V I L + Q A +
Sbjct: 363 LAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFV----IDLQTRLSQQTEASALAAAASV 418
Query: 487 PNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA- 545
+A ++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA
Sbjct: 419 QPLA-------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQ 471
Query: 546 GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
G VY++ S AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 472 GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 233/404 (57%), Gaps = 39/404 (9%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYG 318
SKG+ Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN +N G+A GP
Sbjct: 193 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA-GPM- 250
Query: 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK
Sbjct: 251 ----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKK 306
Query: 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDG--GGLALNAQSRALLMQK 436
A LNG E+ GR +KV VT+ D ++ S+ D D+ G+ L R LM +
Sbjct: 307 ALEQLNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMAR 362
Query: 437 L-DRTGI--------ATSIAGSLGVAPAVNGSAVNQQAISLPV-VGQPAVPVPAVTAPVI 486
L + TG+ A ++GSL S V I L + Q A +
Sbjct: 363 LAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFV----IDLQTRLSQQTEASALAAAASV 418
Query: 487 PNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA- 545
+A ++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA
Sbjct: 419 QPLA-------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQ 471
Query: 546 GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589
G VY++ S AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 472 GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 29/382 (7%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
ERD+RTVF Q+ + T R++Y+FF +AG VRD +++ D+ S RSKGV Y+EF SV
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295
Query: 277 MAIALSGQLLLGQPVMVKPSEAEKN---LVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 333
AIALSG+ LLG PV+V+ +EAEKN + + +A P+ +L V N+HFN+
Sbjct: 296 AAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPF----HRLCVSNIHFNL 351
Query: 334 TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 393
T+ ++ +FEPFG +E V L D + + KGFG++Q+ A+ A +NG ++ GR
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG-FDLAGRN 409
Query: 394 LKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVA 453
++V D T+ T++ FD+ L Q R+ Q R G +S S
Sbjct: 410 MRVCLGNDKFTTETTSSMLKRFDE------TLARQERS---QPSQRNG-GSSTYESQDYR 459
Query: 454 PAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSP-----SECLLLKNMFD 508
A S ++ S P+ + A + + N ++ + P S C LL+NMF+
Sbjct: 460 EAAPLSPTEEE--SRPITRDELMKKLARSEDISDN--SKLVSEPEPPIRSRCALLENMFN 515
Query: 509 PAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM 567
PA ET P++ E++ DV+EEC KYG+V HI V G ++++FE+ + A A +H
Sbjct: 516 PAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQ 575
Query: 568 RWFARRLISAIFMKPEDYEAKF 589
RWF R I A + DY KF
Sbjct: 576 RWFGGRTIKASILPETDYYFKF 597
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/364 (37%), Positives = 192/364 (52%), Gaps = 38/364 (10%)
Query: 161 RSRRERERESERERELELERERERERELRERERDLEMRESRRY--------KEKKEVVEP 212
R R R R +R E R R+ RE R R + RY +EK V EP
Sbjct: 96 RQCRHRSRSWDRRHGSE-SRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREP 154
Query: 213 --EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ Y+EF
Sbjct: 155 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 214
Query: 270 YDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYGAIDRKLYVG 327
++ SVP+AI L+GQ LLG P++V+ S+AEKN +N G GP +LYVG
Sbjct: 215 CEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNG-GPM-----RLYVG 268
Query: 328 NLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387
+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A LNG
Sbjct: 269 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-F 327
Query: 388 EIVGRTLKVSSVTDHV-GTQDTAAKSADFDDDDGGGLALNAQSRALLMQKL-DRTGIATS 445
E+ GR ++V VT+ + G D D + D G +A R LM KL + GI
Sbjct: 328 ELAGRPMRVGHVTERLDGGTDITFPDGDQELDLG-----SAGGRFQLMAKLAEGAGIQL- 381
Query: 446 IAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKN 505
P+ +A A + + AVP+ A+ + ++ + S+C L +
Sbjct: 382 --------PSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPA-LNLASQCFQLSS 432
Query: 506 MFDP 509
+F P
Sbjct: 433 LFTP 436
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK-----AGKVRDV-RLIMDRNSRRSKGVGYIEFYD 271
R R V+ +P A E+ V FF++ G + +++ K ++E
Sbjct: 269 RHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRS 328
Query: 272 VMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSAGGTATGPY 317
V A+AL G + G PV V+ PS+ NL N +A G G
Sbjct: 329 VEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNL---NLAAVGLTPGAG 385
Query: 318 GAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375
G ++ +++VG L + TE Q+R+L E FGP+ + D ETG KG+ F +
Sbjct: 386 GGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTV 445
Query: 376 AKAAQSALNGKLEIVGRTLKV 396
A +ALNG +++ RTL V
Sbjct: 446 TDIACAALNG-IQLGDRTLTV 465
Score = 36.2 bits (82), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 55 KSRSGKRSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRE 114
K R G +D + S RDR R+RD DK DR+R R G +RER RDRE RE
Sbjct: 19 KKRGGDARSPQQDAQPLSSRDRVRERDEDK-----DRERHRRHGEDRER--YRDRESVRE 71
Query: 115 RRE 117
R E
Sbjct: 72 RGE 74
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 209 VVEPEA---DPERDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSR 259
V++P+A R R V+ +P A E+ V +F++ +++
Sbjct: 192 VMQPQAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYIN 251
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQS 305
K ++E V A+AL G L G PV V+ PS+ NL
Sbjct: 252 HDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNL--- 308
Query: 306 NTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCK 363
N +A G G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG K
Sbjct: 309 NLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSK 368
Query: 364 GFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
G+ F + L A +ALNG +++ +TL V
Sbjct: 369 GYAFCVYQDLNVTDIACAALNG-IKMGDKTLTV 400
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 520 EIQGDVEEECSKYGRVKHIYVDK--------RSAGFVYLRFESTEAAASAQRAMHMRWFA 571
+I D+ E KYG + + + + G V+L + + + A+ AMH R F
Sbjct: 461 DIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFG 520
Query: 572 RRLISAIF-----MKPEDYEA 587
+ A+F EDY+A
Sbjct: 521 GNPVVAVFYPENKFADEDYDA 541
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
R R V+ +P A E+ V FFS+ +++ K ++E
Sbjct: 252 RHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 311
Query: 272 VMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSAGGTATGPY 317
V A+AL G +L G PV V+ PS+ NL N A G ++G
Sbjct: 312 VEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNL---NLGAVGLSSGST 368
Query: 318 GAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375
G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F +
Sbjct: 369 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 428
Query: 376 AKAAQSALNGKLEIVGRTLKV 396
A +ALNG +++ +TL V
Sbjct: 429 TDIACAALNG-IKMGDKTLTV 448
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 29/213 (13%)
Query: 209 VVEPEA---DPERDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSR 259
V++P+A R R V+ +P A E V +F++ +++
Sbjct: 223 VIQPQAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYIN 282
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQS 305
K ++E V A+AL G + G PV V+ PS+ NL
Sbjct: 283 HDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNL--- 339
Query: 306 NTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCK 363
N +A G G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG K
Sbjct: 340 NLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSK 399
Query: 364 GFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
G+ F + L A +ALNG +++ +TL V
Sbjct: 400 GYAFCVYQDLNVTDIACAALNG-IKMGDKTLTV 431
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 497 PSECLLLKNMFDP-AMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK--------RSAGF 547
P++ + L + P + D +++ +Q D+ EE +YG + + + + G
Sbjct: 471 PTKVVCLTQVVSPDELRDDEEYEDIVQ-DMREEGCRYGNLVKVVIPRPDPSGAPVAGVGR 529
Query: 548 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 584
V+L F E++ A+ MH R FA + A+F PED
Sbjct: 530 VFLEFADVESSTKAKNGMHGRKFANNQVVAVFY-PED 565
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 209 VVEPEADPE---RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSR 259
V++P+A + R R V+ +P A E+ V +F++ +++
Sbjct: 199 VIQPQAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYIN 258
Query: 260 RSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQS 305
K ++E V A+AL G L G PV V+ PS+ NL
Sbjct: 259 HDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL--- 315
Query: 306 NTSAGGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCK 363
N +A G G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG K
Sbjct: 316 NLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSK 375
Query: 364 GFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
G+ F + L A +ALNG +++ +TL V
Sbjct: 376 GYAFCVYQDLNVTDIACAALNG-IKMGDKTLTV 407
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 520 EIQGDVEEECSKYGRVKHIYVDK--------RSAGFVYLRFESTEAAASAQRAMHMRWFA 571
+I D+ E KYG + + + + G V+L + + A A+ AMH R F
Sbjct: 468 DIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFG 527
Query: 572 RRLISAIFMKPEDYEAKFKS 591
+ A+F E KF S
Sbjct: 528 GNPVVAVFYP----ENKFSS 543
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
R R V+ +P A E+ V FFS +++ K ++E
Sbjct: 236 RHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRS 295
Query: 272 VMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSAGGTATGPY 317
V A+AL G + G P V+ PS+ NL N +A G + G
Sbjct: 296 VEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNL---NLAAVGLSPGSA 352
Query: 318 GAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375
G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F + +
Sbjct: 353 GGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSV 412
Query: 376 AKAAQSALNGKLEIVGRTLKV 396
A +ALNG +++ +TL V
Sbjct: 413 TDIACAALNG-IKMGDKTLTV 432
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 524 DVEEECSKYGRVKHIYVDKRS--------AGFVYLRFESTEAAASAQRAMHMRWFARRLI 575
D+ EC K+G + ++ + + S G V+L + ++++ A+++++ R F +
Sbjct: 497 DMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQV 556
Query: 576 SAIFMKPED--YEAKF 589
A+F PE+ YE +
Sbjct: 557 VAVFY-PENKFYEGDY 571
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
R R V+ + A E+ V FFS+ +++ K ++E
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 272 VMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS----------NTSAGGTATGPYGAI 320
V A++L G + G PV V+ PS+ +L + N +A G G G +
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL 355
Query: 321 DR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378
+ +++VG L + TE+Q+R+L E FG ++ L D ETG KG+ F + L
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 379 AQSALNGKLEIVGRTLKV 396
A +ALNG +++ +TL V
Sbjct: 416 ACAALNG-IKMGDKTLTV 432
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 67 DEENGSRRDRDRDR-DRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERERR 125
DEENG R D+ D +R RD +R+ R ++RERE RD++ RE++ E RR
Sbjct: 19 DEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRDKD-----RERDSEVSRR 73
Query: 126 ER-RDREKERERERDGERRSSSRSRRSS 152
R RD EK +ER RD +R R RSS
Sbjct: 74 SRDRDGEKSKERSRDKDRDHRERHHRSS 101
Score = 36.2 bits (82), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 43 KREDSEEEEEEEKSRSGKRSR-RDEDEENGS---RRDRDRDRDRDKERHRRDRDRDRDRG 98
KRE + E E +S+ +R + RD+D E S RR RDRD ++ KER RD+DRD
Sbjct: 38 KRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKER---SRDKDRDH- 93
Query: 99 RERERETERDRERS 112
RER + R R+ S
Sbjct: 94 RERHHRSSRHRDHS 107
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 12/187 (6%)
Query: 189 RERERDLEMRESRRYKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVR 248
++++ D+EM ++ + K+ P + +T+FA + + D+ FF +AG+V
Sbjct: 352 KKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVV 411
Query: 249 DVRL-IMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNT 307
DVRL D S KG G+IEF A+ ++G+LLLG+ V + + SN
Sbjct: 412 DVRLSSFDDGS--FKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGTPRNSNP 469
Query: 308 SAGGTATGPYGAIDRKLYVGNLHFNMTE----TQLRKLFEPFGPVELVQLPLDIETGQCK 363
G G+ R +YV ++ E +LR F G V V +P D ETG +
Sbjct: 470 GRKG-----EGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASR 524
Query: 364 GFGFVQF 370
GF ++
Sbjct: 525 GFAYIDL 531
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPL 355
S A++ +N + GG+ T L+ GNL + + + + F+ G V V+L
Sbjct: 367 SNAKQPKTPTNQTQGGSKT---------LFAGNLSYQIARSDIENFFKEAGEVVDVRL-S 416
Query: 356 DIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
+ G KG+G ++FA E A+ A +NGKL ++GR +++
Sbjct: 417 SFDDGSFKGYGHIEFASPEEAQKALE-MNGKL-LLGRDVRL 455
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 189 RERERDLEMRESRRYKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVR 248
+++ D+EM ++ + K+ P +T+FA + DV FF +AG+V
Sbjct: 266 KKKSSDVEMVDAEKSSAKQPKT-PSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVV 324
Query: 249 DVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE--AEKNLVQSN 306
DVR +R+ +G G++EF A+ G+ LLG+ + + ++ E+ +
Sbjct: 325 DVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAF 384
Query: 307 TSAGGTA-TGPYGAIDRKLYVGNLHFNMTE----TQLRKLFEPFGPVELVQLPLDIETGQ 361
T G +G G ++K++V +++E LR+ F G ++ V +P+D +TG
Sbjct: 385 TPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGN 444
Query: 362 CKGFGFVQFAQ 372
KG +++F++
Sbjct: 445 SKGIAYLEFSE 455
Score = 32.7 bits (73), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 186 RELRERERDLEMRESRRYKEKKEVVEPEADPER------DQRTVFAYQMPLKA-----TE 234
R L RE L++ + R + ++ P++ R D++ +F +K +E
Sbjct: 360 RPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIF-----VKGFDASLSE 414
Query: 235 RDVY----EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 269
D+ E FS G++++V + +DR++ SKG+ Y+EF
Sbjct: 415 DDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 271
R R V+ +P A E+ V FFS +++ K ++E
Sbjct: 218 RHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 277
Query: 272 VMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSAGGTATGPY 317
V A+AL G + G PV V+ PS+ NL N +A G+ G
Sbjct: 278 VEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNL---NLAAVGSTPGSS 334
Query: 318 GAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375
G ++ +++VG L + TE+Q+R+L E FG + L D ETG KG+ F + +
Sbjct: 335 GGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSV 394
Query: 376 AKAAQSALNGKLEIVGRTLKV 396
A +ALNG +++ +TL V
Sbjct: 395 TDIACAALNG-IKMGDKTLTV 414
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 119/205 (58%), Gaps = 32/205 (15%)
Query: 9 LEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSRRDEDE 68
L + +E+R +++D DSS K +R + S+ S + +E+E+E+ G R+++
Sbjct: 646 LSRDCKEERHREKDSDSS---KGRRSDTSKSSRVEHNRDKEQEQEKVGDKGLEKGREKEL 702
Query: 69 ENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRER-REKEKERERRER 127
E G ++R +D+++D+E+ RD++ ++GR +ER +R +E+ + R +E+ K R+++
Sbjct: 703 EKGRDKERVKDQEKDQEK---GRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRS 759
Query: 128 RDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELERERERERE 187
+D EK RE+++D E E++RE +++ELE RE+++++E
Sbjct: 760 KDLEKCREKDQDKEL----------------------EKDREKNQDKELEKGREKDQDKE 797
Query: 188 L---RERERDLEMRESRRYKEKKEV 209
L RE++RD EM ++R + KE+
Sbjct: 798 LEKGREKDRDKEMEKAREKDQDKEL 822
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 88/141 (62%), Gaps = 9/141 (6%)
Query: 10 EKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSG---KRSRRDE 66
+K +E+ R++ QD + ++ R+++ E++ K +D E E+ EK + K +D
Sbjct: 783 DKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDR 842
Query: 67 DEENGSRRDRDRDRDRDKERHR-----RDRDRDRDRGRERERETERDRERSRERREKEKE 121
D+ RD+ RD+DRDK R + R++DRD+ R ++RE+ ERDR++ RE ++++KE
Sbjct: 843 DKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGRE-KDRDKE 901
Query: 122 RERRERRDREKERERERDGER 142
+ + +D+EKER ++RD ER
Sbjct: 902 QVKTREKDQEKERLKDRDKER 922
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 104/165 (63%), Gaps = 18/165 (10%)
Query: 50 EEEEEKSRSGKRSR-----RDEDEENGSRRDRDRDRDRDKERHR-RDRDRDRDRGRERER 103
++E+ K R KRS+ R++D++ +DR++++D++ E+ R +D+D++ ++GRE++R
Sbjct: 747 DKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDR 806
Query: 104 ETERDRERSRER---------REKEKERERRERRDREKERERERDGER-RSSSRSRRSSS 153
+ E ++ R +++ ++++KE E+ + +DR+K RE++RD R + + R
Sbjct: 807 DKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDR 866
Query: 154 QSRRSSSRSR-RERERESERERELELERERERERE-LRERERDLE 196
R R + RE++RE RER+ + RE++R++E ++ RE+D E
Sbjct: 867 DKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQE 911
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 110/186 (59%), Gaps = 24/186 (12%)
Query: 11 KTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSR-RDEDEE 69
K +E+ R++ QD + ++ ++++ E+ K +D E E+ EK R + + R++D++
Sbjct: 760 KDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQD 819
Query: 70 NGSRRDRDRDRDRDKER-HRRDRDRDRDRGRERERETERDRERSRER-REKEKERERRER 127
+ R++D+D++ E+ +DRD+ R++ R++ R+ +RD+ R ++R + +EK+R++
Sbjct: 820 KELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLRE 879
Query: 128 RDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELERERERERE 187
+DREK RER+RD R ++R++E + RE + E+ER ++R+
Sbjct: 880 KDREKIRERDRDKGR--------------------EKDRDKEQVKTREKDQEKERLKDRD 919
Query: 188 LRERER 193
+ERE+
Sbjct: 920 -KEREK 924
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 129/222 (58%), Gaps = 19/222 (8%)
Query: 10 EKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRS-----GKRSRR 64
EK +E+ R +++ D ++ R+++ E+ K + +E+EK R G+ +R
Sbjct: 699 EKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKR 758
Query: 65 DEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERER 124
+D E +D+D++ ++D+E+ ++D++ ++GRE++++ E ++ R ++R +KE E+ R
Sbjct: 759 SKDLEKCREKDQDKELEKDREK---NQDKELEKGREKDQDKELEKGREKDR-DKEMEKAR 814
Query: 125 RERRDREKERERERD-------GERRSSSRSRRSSSQSRRSSSRSR-RERERESEREREL 176
+ +D+E E+ RE+D G+ + + R R R + RE++R+ RE++
Sbjct: 815 EKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDR 874
Query: 177 ELERERERERELRERERDLEMRESRRYKEKKEVVEPEADPER 218
+ RE++RE+ +RER+RD + RE R KE+ + E + + ER
Sbjct: 875 DKLREKDREK-IRERDRD-KGREKDRDKEQVKTREKDQEKER 914
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 100/173 (57%), Gaps = 11/173 (6%)
Query: 10 EKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSR-RDEDE 68
+K +E+ R++ QD + ++ ++++ E+ K D E++ +K R R + R++D
Sbjct: 807 DKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDR 866
Query: 69 ENGSRRDRDRDRDRDKERHR---------RDRDRDRDRGRERERETERDRERSRERREKE 119
+ +DRD+ R++D+E+ R +DRD+++ + RE+++E ER ++R +E REK
Sbjct: 867 DKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKE-REKV 925
Query: 120 KERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESER 172
+++ R RD+EK+R +E ++++ + R +S + R+ E + + ER
Sbjct: 926 RDKGRDRDRDQEKKRNKELTEDKQAPEQRSRPNSPRVKQEPRNGEESKIKPER 978
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 277
R RT+ A + TE ++ E F A ++RL+ +SKG+ YIEF
Sbjct: 391 RAARTLLAKNLSFNITEDELKEVFEDA---LEIRLVSQDG--KSKGIAYIEFKSEADAEK 445
Query: 278 AIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336
+ G + G+ V + + EK Q T T +G + L + NL ++ TE
Sbjct: 446 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGE----SKTLVLSNLSYSATEE 500
Query: 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
L+++FE +++P + + G+ KG+ F++FA E AK A ++ N K+EI GRT+++
Sbjct: 501 TLQEVFEK---ATFIKVPQN-QQGKSKGYAFIEFASFEDAKEALNSCN-KMEIEGRTIRL 555
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 278
+ +T+ + ATE + E F KA ++ + +SKG +IEF A
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEA 539
Query: 279 IALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID------RKLYVGNLHFN 332
+ ++ E E ++ GP G+ + + L+V L +
Sbjct: 540 LNSCNKM-----------EIEGRTIRLELQ------GPRGSPNARSQPSKTLFVKGLSED 582
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
TE L++ FE G V ++ D ETG KGFGFV F E AKAA+ A+
Sbjct: 583 TTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 56.6 bits (135), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 119/218 (54%), Gaps = 26/218 (11%)
Query: 5 EYEYLEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSRR 64
E E LE+ +EQ +++++ +++ ++++K E R+ ++ ++EEE K + +R R
Sbjct: 2704 EKERLEREKQEQLKKEEELRKKEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLER 2763
Query: 65 DEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERER 124
++ E+ +++E R++++R ++ E + +E+ R ++E+E +R+
Sbjct: 2764 EKQEQ----------LQKEEELKRQEQER------LQKEEALKRQEQERLQKEEELKRQE 2807
Query: 125 RERRDREK--ERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELERER 182
+ER +REK + ++E + +R+ R ++ + R+ R ++E E + + + LE
Sbjct: 2808 QERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLE----- 2862
Query: 183 ERERELRERERDLEMRESRRYKEKKEVVEPEADPERDQ 220
++ EL ERE+ + +S+ + ++++ E E+D+
Sbjct: 2863 RKKIELAEREQHI---KSKLESDMVKIIKDELTKEKDE 2897
Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 105/179 (58%), Gaps = 10/179 (5%)
Query: 47 SEEEEEEEKSRSGKRSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETE 106
+++EEE ++ ++ +++++ R +R++ KE R ++++R +++E +
Sbjct: 2686 AKQEEERKERERIEKEKQEKE-----RLEREKQEQLKKEEELRKKEQERQEQQQKEEALK 2740
Query: 107 RDRERSRERREKEKERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRER 166
R +E+ R ++E+E +R+ +ER +REK+ + +++ E + + R ++ + + R ++
Sbjct: 2741 R-QEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 167 ERESERERELELERER----ERERELRERERDLEMRESRRYKEKKEVVEPEADPERDQR 221
E E +R+ + LERE+ ++E EL+ +E++ +E ++++E ++ E + +R ++
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQ 2858
Score = 42.0 bits (97), Expect = 0.013, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 76/148 (51%), Gaps = 27/148 (18%)
Query: 1 MEFDEYEYLEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGK 60
+E ++ E L+K E +RQ+++ R +K E R+ ++ ++EEE K + +
Sbjct: 2761 LEREKQEQLQKEEELKRQEQE-----------RLQKEEALKRQEQERLQKEEELKRQEQE 2809
Query: 61 RSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEK 120
R R++ E+ +++E R++++ R ++ E + +E+ R ++E+E
Sbjct: 2810 RLEREKQEQ----------LQKEEELKRQEQE------RLQKEEALKRQEQERLQKEEEL 2853
Query: 121 ERERRERRDREKERERERDGERRSSSRS 148
+R+ +ER +R+K ER+ +S S
Sbjct: 2854 KRQEQERLERKKIELAEREQHIKSKLES 2881
Score = 38.5 bits (88), Expect = 0.13, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 81/143 (56%), Gaps = 13/143 (9%)
Query: 107 RDRER-SRERREKEKERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRE 165
+++ER RE++E+ K+ E ++++E++ +++++ + + R + + + R E
Sbjct: 2703 QEKERLEREKQEQLKKEEELRKKEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLE 2762
Query: 166 RERESERERELELER-ERER----------ERELRERERDLEMRESRRY-KEKKEVVEPE 213
RE++ + ++E EL+R E+ER E+E ++E +L+ +E R +EK+E ++ E
Sbjct: 2763 REKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKE 2822
Query: 214 ADPERDQRTVFAYQMPLKATERD 236
+ +R ++ + LK E++
Sbjct: 2823 EELKRQEQERLQKEEALKRQEQE 2845
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 298 AEKNLVQSNTSAGGTATG-PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD 356
A ++L + + + ATG PY + L+V L++ +E+++++ FE +GP++ V L D
Sbjct: 117 AAEDLKKYDPNNDPNATGDPY----KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTD 172
Query: 357 IETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
T + KG+ F+++ KAA +G+ +I GR + V
Sbjct: 173 QLTNKPKGYAFIEYMHTRDMKAAYKQADGQ-KIDGRRVLV 211
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 276
ER+ +T+ + A+E + E F KA ++ + N R KG ++EF
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 277 MAI-ALSGQLLLGQPV---MVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN 332
A+ + + + G+ + PS + N+ A G + + L+V L +
Sbjct: 513 EALNSCNNTEIEGRAIRLEFSSPSWQKGNM---------NARGGFNQQSKTLFVRGLSED 563
Query: 333 MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383
TE LR+ FE G + ++ D +TG KGFGFV F+ E AKAA+ A+
Sbjct: 564 TTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 123/296 (41%), Gaps = 47/296 (15%)
Query: 132 KERERERDGE--RRSSSRSRRSSSQSRRSS-------------SRSRRERERESEREREL 176
KE +R E +S+ +++ +++ S+ R +E ++ L
Sbjct: 251 KEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNL 310
Query: 177 ELERER----------------ERERELRERERDLEMRESRRYKEKKEVVEPEADPERDQ 220
++ R + ++ L+ + L E + K K + E ERD
Sbjct: 311 QVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDA 370
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 280
RT+F +P + TE ++ F A +VRL++++ SKG+ YIEF A+
Sbjct: 371 RTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKEG-SSKGMAYIEFKTEAEAEKALE 426
Query: 281 LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRK 340
+ MV EK+ +S G + + L V NL + +E L++
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERES-------KTLIVNNLSYAASEETLQE 479
Query: 341 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
LF+ +++ Q G+ KG+ FV+F E AK A ++ N EI GR +++
Sbjct: 480 LFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSCNN-TEIEGRAIRL 530
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 121/285 (42%), Gaps = 56/285 (19%)
Query: 146 SRSRRSSSQSRRSSS-----RSRRERERESERERE----------------------LEL 178
++ ++ + S S S +E + + RE ++
Sbjct: 221 AKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDF 280
Query: 179 ERERERERELRERER-----DLEMRESRRYKEKKEVVEPEADPERDQRTVFAYQMPLKAT 233
E E E+ L+ + ++++ ++ + + K E ERD RT+F +P T
Sbjct: 281 SSEEEVEKALKLTGKKILGTEVKIEKAMAFDKNKTA---ENKKERDSRTLFVKNIPYSTT 337
Query: 234 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVM 292
++ E F A +D+R+ ++ +KG+ Y+EF + A+ G + G+ +
Sbjct: 338 VEELQEIFENA---KDIRIPTGKDG-SNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIF 393
Query: 293 VKPSEAEKNLVQSNTSAGGTATGPYGAIDRK-LYVGNLHFNMTETQLRKLFEPFGPVELV 351
V + + G GP G D K L V NL ++ TE LR++FE + +
Sbjct: 394 V-------DFTGEKSQNSGNKKGPEG--DSKVLVVNNLSYSATEDSLREVFEKATSIRIP 444
Query: 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396
Q G+ KGF F++F+ E AK A + N EI GR++++
Sbjct: 445 Q-----NQGRAKGFAFIEFSSAEDAKDAMDSCNN-TEIEGRSIRL 483
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 275
PE D + + + ATE + E F KA +R + +N R+KG +IEF
Sbjct: 410 PEGDSKVLVVNNLSYSATEDSLREVFEKATSIR-----IPQNQGRAKGFAFIEFSSAEDA 464
Query: 276 PMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMT 334
A+ + + + G+ + ++ S+ + A + L+V L + T
Sbjct: 465 KDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGS---------AQSKTLFVRGLSEDTT 515
Query: 335 ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFA 371
E L++ F+ G V ++ D +TG KGFGFV F+
Sbjct: 516 EETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFS 549
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 10/67 (14%)
Query: 69 ENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERERRERR 128
+ G R+R +DRDRDK++ RDR++D+ RE+ERE E+DR R EKERER + R
Sbjct: 201 DKGRERERTKDRDRDKDKS---RDREKDKTREKEREREKDRNR-------EKERERDKDR 250
Query: 129 DREKERE 135
D++KERE
Sbjct: 251 DKKKERE 257
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 8/81 (9%)
Query: 68 EENGSRRDRDRDRDRDKERHRRDRDRDR-----DRGRERERETERDRERSRER-REKEKE 121
E +GSR +D D+ +D+E R D+DR R D+GRERER +RDR++ + R REK+K
Sbjct: 168 ESSGSREQKDPDQPKDQESKRDDKDRRRDAERSDKGRERERTKDRDRDKDKSRDREKDKT 227
Query: 122 RERRERRDREKERERERDGER 142
RE+ R+REK+R RE++ ER
Sbjct: 228 REKE--REREKDRNREKERER 246
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
Query: 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAL 281
T+F + + V EFF + G+V VRL + S+G G+++F A+ L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDG-SSRGFGHVQFASSEEAKKALEL 370
Query: 282 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRK- 340
G L G+PV + + + + G+ + ++V ++ E+++R+
Sbjct: 371 HGCDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLEESKIRES 430
Query: 341 ---LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394
F G + V +P+D ETG KG ++ F Q++ + LE+ G L
Sbjct: 431 LEGHFADCGEITRVSVPMDRETGASKGIAYIDFKD-------QASFSKALELSGSDL 480
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 241 FSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293
F+ G++ V + MDR + SKG+ YI+F D S A+ LSG L G + V
Sbjct: 435 FADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYV 487
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
R L++ ++++ +E++LR+ FE +GP++ + L D E+G+ KG+ F+++ AA
Sbjct: 102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYK 161
Query: 382 ALNGK 386
+GK
Sbjct: 162 HADGK 166
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
+ L+V ++++ TE++LR+ FE +GP++ + + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 382 ALNGKLEIVGRTLKV 396
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 221 RTVFAYQMPLKATERD-VYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 279
RTV+ + + T D + EFF + G+V+ VR+ D + ++EF D SVP A+
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRAL 126
Query: 280 ALSGQLLLGQPV--------MVKPSE 297
A +G + +P+ +VKP E
Sbjct: 127 AFNGVMFGDRPLKINHSNNAIVKPPE 152
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 221 RTVFAYQMPLKATERD-VYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 279
RTV+ + + T D + EFF + G+V+ VR+ D + ++EF D SVP A+
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRAL 126
Query: 280 ALSGQLLLGQPV--------MVKPSE 297
A +G + +P+ +VKP E
Sbjct: 127 AFNGVMFGDRPLKINHSNNAIVKPPE 152
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
+ L+V ++++ TE++LR+ FE +GP++ + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 382 ALNGKLEIVGRTLKV 396
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
+ L+V ++++ TE++LR+ FE +GP++ + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 382 ALNGKLEIVGRTLKV 396
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 221 RTVFAYQMPLKATERD-VYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 279
RTV+ + + T D + EFF + G+V+ VR+ D + ++EF D SVP A+
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRAL 123
Query: 280 ALSGQLLLGQPV--------MVKPSE 297
A +G + +P+ +VKP E
Sbjct: 124 AFNGVMFGDRPLKINHSNNAIVKPPE 149
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 381
+ L+V ++++ TE++LR+ FE +GP++ + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 382 ALNGKLEIVGRTLKV 396
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 23/137 (16%)
Query: 74 RDRDRDRDRDKERHRR-----DRDRDRDRGRERERETERDRERSRERREKEKERERRERR 128
R+R+R+ DKER R DR R RDR R ER T R+ RE+R + E+ RR
Sbjct: 1174 RERNRESSYDKERKNRNAVAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRR 1233
Query: 129 -DREKERERERDGERRS----------------SSRSRRSSSQSRRSSSRSR-RERERES 170
DR ER GER S R RS R + R R +ERE
Sbjct: 1234 GDRSSRNERSDRGERSDRGERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERER 1293
Query: 171 ERERELELERERERERE 187
+R+R+L+ +RER+RER+
Sbjct: 1294 DRDRDLKGQRERKRERD 1310
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 21/135 (15%)
Query: 13 VEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGK------RSRRDE 66
V RQ+K+D S ++ RE + R E+ E SRS K RS R+E
Sbjct: 1192 VAHDRQRKRDRSRSYERPTIRENSAPR----------EKRMESSRSEKDSRRGDRSSRNE 1241
Query: 67 DEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRER-REKEKERERR 125
+ G R DR DR + R DR DRG +R DRE+ R R +E+E++R+R
Sbjct: 1242 RSDRGERSDRGERSDRGE---RSDRGERSDRGERSDRGERSDREKERSRAKERERDRDRD 1298
Query: 126 ERRDREKERERERDG 140
+ RE++RER+ DG
Sbjct: 1299 LKGQRERKRERD-DG 1312
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 40.0 bits (92), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI---ETGQCKGFGFVQFAQLEHAKA 378
+ L+V ++++ TE++LR+ FE +GP++ + + + +G+ +G+ F+++ +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHS 162
Query: 379 AQSALNGKLEIVGRTLKV 396
A +GK +I GR + V
Sbjct: 163 AYKHADGK-KIDGRRVLV 179
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 14 EEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSRRDEDEENGSR 73
EE R QK++ SS K+ + ++ +EDS+ E+E K + RD E
Sbjct: 157 EESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKEADRDRHREPDRD 216
Query: 74 RDRDRDRDRDKERHRRDRDRDRDR-----------------GRERERETERDRERSRER- 115
R+RD +R++ + R ++DRDR+ G+E+ER+ +RDR++ ++R
Sbjct: 217 RNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRE 276
Query: 116 REKEKERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSR 163
R K K E DREK R+ ++ ++ S SS + S RS+
Sbjct: 277 RRKSKNGEHTRDPDREKSRDADKSEKKADISVGASKSSTLKASKRRSK 324
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 34/130 (26%)
Query: 36 KSERSYRKREDSEEEEEEEKSRSGKRSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDR 95
K E S ++E+ E +E+S S + +++E +E+ R+++RD+++ KE DR
Sbjct: 155 KEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKEA-------DR 207
Query: 96 DRGRE----RERETERDRERSRERREKE-----------------------KERERRERR 128
DR RE R R+ ER++ R+R +++++ KE+ER++ R
Sbjct: 208 DRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDR 267
Query: 129 DREKERERER 138
DR+K ++RER
Sbjct: 268 DRDKGKDRER 277
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 373
R L++GNL ++T +LR FE FG E+++ +DI+ + F Q++ +
Sbjct: 656 RTLFIGNLEKDITAGELRSHFEAFG--EIIE--IDIKKQGLNAYAFCQYSDI 703
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 38/119 (31%)
Query: 110 ERSRERREKE-KERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERER 168
++ +E REK+ +E+E+RER +REKE R++D RE+E
Sbjct: 2000 QKEKEIREKDLREKEQRERDNREKEL-RDKD-----------------------LREKEM 2035
Query: 169 ESERERELELERER-ERERELRERER-----DLE-------MRESRRYKEKKEVVEPEA 214
+ +RE EL RE+ +RERE RE+E+ D+E MRE Y++ K + EA
Sbjct: 2036 REKEQREKELHREKDQREREHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEA 2094
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 41/109 (37%)
Query: 74 RDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRER------------------ 115
R+RD DR R+ +RHR D+D RD R RER RDRER +R
Sbjct: 2125 RERDWDRPREWDRHR-DKDSSRDWDRNRERSANRDREREADRGKEWDRSRERSRNRERER 2183
Query: 116 -------------------REKEKERERRERRDREKERERERDGERRSS 145
R++E+ R+R+DR K +E RD + +S
Sbjct: 2184 DRRRDRDRSRSRERDRDKARDRERG---RDRKDRSKSKESARDPKPEAS 2229
>sp|Q8TDR0|MIPT3_HUMAN TRAF3-interacting protein 1 OS=Homo sapiens GN=TRAF3IP1 PE=1 SV=1
Length = 691
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 18/98 (18%)
Query: 33 REEKSERSYRKREDSEEEEEEEKSRSGKRSRRDEDEE----------------NGSRRDR 76
REE+S R ++ ED + E +E+S S R +++E +E NG R R
Sbjct: 155 REEES-RVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDKEKAKENGGNRHR 213
Query: 77 DRDRDRDKERHRRDRDRDRDRG-RERERETERDRERSR 113
+ +R+R K R R D +R +DRG RER+R++ER +E R
Sbjct: 214 EGERERAKARARPDNERQKDRGNRERDRDSERKKETER 251
>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1
Length = 501
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 7/54 (12%)
Query: 76 RDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERERRERRD 129
+DRD+DR+ E +R+R R+++RE +DRERS+++R K + ERR + D
Sbjct: 351 KDRDKDREAE-------SERERSRKKDREHHKDRERSKDKRSKGEGEERRHKDD 397
>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23
PE=1 SV=3
Length = 820
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Query: 74 RDRDR-DRDRDKERHRRDRDRDRD-----RGRERERETERDRERSRE 114
RDR++ DRDRDK+ HRRD+DR R RG++ + +RD ++ E
Sbjct: 83 RDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKDEE 129
>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23
PE=2 SV=1
Length = 820
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Query: 74 RDRDR-DRDRDKERHRRDRDRDRD-----RGRERERETERDRERSRE 114
RDR++ DRDRDK+ HRRD+DR R RG++ + +RD ++ E
Sbjct: 83 RDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKDEE 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,813,586
Number of Sequences: 539616
Number of extensions: 9984940
Number of successful extensions: 344751
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4556
Number of HSP's successfully gapped in prelim test: 3791
Number of HSP's that attempted gapping in prelim test: 92844
Number of HSP's gapped (non-prelim): 90072
length of query: 591
length of database: 191,569,459
effective HSP length: 123
effective length of query: 468
effective length of database: 125,196,691
effective search space: 58592051388
effective search space used: 58592051388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)