Query 007742
Match_columns 591
No_of_seqs 377 out of 3422
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 14:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01622 SF-CC1 splicing fact 100.0 5.6E-53 1.2E-57 446.2 41.7 368 215-591 84-456 (457)
2 KOG0147 Transcriptional coacti 100.0 1E-53 2.2E-58 418.3 24.1 369 209-591 168-536 (549)
3 TIGR01642 U2AF_lg U2 snRNP aux 100.0 8.4E-48 1.8E-52 412.7 33.6 304 216-588 171-507 (509)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-41 3.4E-46 347.0 33.3 335 220-585 3-351 (352)
5 TIGR01645 half-pint poly-U bin 100.0 4.2E-40 9.2E-45 341.4 36.9 177 219-401 106-283 (612)
6 KOG0145 RNA-binding protein EL 100.0 4.1E-38 9E-43 278.8 25.3 307 220-583 41-358 (360)
7 TIGR01628 PABP-1234 polyadenyl 100.0 9.6E-37 2.1E-41 329.7 29.5 334 222-584 2-365 (562)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-35 3.7E-40 311.3 35.1 336 219-583 1-351 (481)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 5E-36 1.1E-40 311.2 29.8 245 218-583 56-307 (578)
10 KOG0117 Heterogeneous nuclear 100.0 4.4E-36 9.4E-41 286.1 24.9 251 217-587 80-335 (506)
11 KOG0124 Polypyrimidine tract-b 100.0 7.7E-35 1.7E-39 269.8 19.2 349 221-587 114-539 (544)
12 KOG0144 RNA-binding protein CU 100.0 3.1E-33 6.8E-38 265.3 24.8 178 211-404 25-208 (510)
13 KOG0127 Nucleolar protein fibr 100.0 1E-32 2.2E-37 268.9 27.2 338 220-583 5-378 (678)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.8E-32 6.1E-37 286.9 31.2 290 221-583 97-480 (481)
15 KOG0120 Splicing factor U2AF, 100.0 2.1E-33 4.5E-38 280.7 17.8 301 217-590 172-499 (500)
16 KOG0148 Apoptosis-promoting RN 100.0 9.6E-32 2.1E-36 240.3 20.5 235 218-583 4-238 (321)
17 KOG0148 Apoptosis-promoting RN 100.0 3.4E-29 7.3E-34 224.1 18.1 178 220-404 62-240 (321)
18 TIGR01659 sex-lethal sex-letha 100.0 8.4E-29 1.8E-33 245.5 21.5 169 217-402 104-275 (346)
19 KOG0123 Polyadenylate-binding 100.0 7.1E-29 1.5E-33 247.1 20.5 322 221-584 2-350 (369)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 8.4E-27 1.8E-31 250.3 24.9 182 219-401 294-501 (509)
21 TIGR01622 SF-CC1 splicing fact 99.9 8.6E-27 1.9E-31 246.6 20.5 177 220-401 186-447 (457)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.8E-25 6E-30 227.2 23.0 183 219-402 88-349 (352)
23 KOG0127 Nucleolar protein fibr 99.9 5.7E-26 1.2E-30 222.0 15.8 182 220-402 117-378 (678)
24 TIGR01659 sex-lethal sex-letha 99.9 4.7E-25 1E-29 218.8 21.6 166 318-584 104-276 (346)
25 KOG0147 Transcriptional coacti 99.9 6.4E-26 1.4E-30 223.4 15.1 176 219-400 277-526 (549)
26 KOG0110 RNA-binding protein (R 99.9 1.3E-24 2.8E-29 219.9 20.3 270 218-585 383-695 (725)
27 KOG4212 RNA-binding protein hn 99.9 1.6E-23 3.4E-28 199.4 25.0 187 208-397 32-289 (608)
28 TIGR01645 half-pint poly-U bin 99.9 9.5E-24 2.1E-28 219.9 20.5 172 322-583 108-284 (612)
29 KOG1190 Polypyrimidine tract-b 99.9 9.7E-23 2.1E-27 192.8 19.8 317 219-584 27-374 (492)
30 KOG0131 Splicing factor 3b, su 99.9 1.7E-23 3.7E-28 177.0 12.3 168 218-401 7-176 (203)
31 TIGR01628 PABP-1234 polyadenyl 99.9 3.3E-22 7.2E-27 216.5 19.8 182 218-402 176-364 (562)
32 KOG0145 RNA-binding protein EL 99.9 4.4E-22 9.6E-27 177.2 16.2 183 218-401 125-357 (360)
33 TIGR01648 hnRNP-R-Q heterogene 99.9 6.7E-22 1.5E-26 206.0 20.2 164 219-402 137-307 (578)
34 KOG1456 Heterogeneous nuclear 99.9 5.9E-20 1.3E-24 171.9 25.6 327 218-584 29-364 (494)
35 KOG0144 RNA-binding protein CU 99.9 6.4E-22 1.4E-26 188.7 11.6 165 321-584 34-207 (510)
36 KOG0117 Heterogeneous nuclear 99.9 7E-21 1.5E-25 182.6 15.1 166 219-404 163-333 (506)
37 KOG1548 Transcription elongati 99.8 1.5E-19 3.3E-24 168.2 19.1 210 320-583 133-352 (382)
38 KOG0131 Splicing factor 3b, su 99.8 1.9E-20 4E-25 158.7 11.7 162 322-583 10-177 (203)
39 KOG0109 RNA-binding protein LA 99.8 1.3E-20 2.9E-25 170.9 11.1 148 221-403 3-151 (346)
40 KOG0110 RNA-binding protein (R 99.8 2.8E-20 6.1E-25 188.7 12.7 174 221-402 516-693 (725)
41 KOG0146 RNA-binding protein ET 99.8 4.6E-19 1E-23 158.7 14.7 252 321-586 19-368 (371)
42 KOG0109 RNA-binding protein LA 99.8 2.4E-19 5.3E-24 162.8 10.9 147 322-582 3-149 (346)
43 KOG4211 Splicing factor hnRNP- 99.8 2.1E-17 4.7E-22 161.3 23.1 170 219-399 9-179 (510)
44 KOG1190 Polypyrimidine tract-b 99.8 3.7E-17 8.1E-22 155.3 23.3 283 221-582 151-490 (492)
45 KOG0124 Polypyrimidine tract-b 99.8 2.7E-18 5.8E-23 160.3 13.0 169 322-580 114-287 (544)
46 KOG0123 Polyadenylate-binding 99.8 1.1E-17 2.4E-22 167.1 16.5 151 323-586 3-156 (369)
47 KOG4205 RNA-binding protein mu 99.8 3.5E-18 7.6E-23 164.1 12.1 178 219-408 5-182 (311)
48 KOG0146 RNA-binding protein ET 99.7 1.1E-17 2.5E-22 149.8 11.7 179 219-399 18-362 (371)
49 KOG4206 Spliceosomal protein s 99.7 1.7E-16 3.7E-21 140.8 17.4 206 322-581 10-220 (221)
50 KOG4206 Spliceosomal protein s 99.7 2.5E-16 5.3E-21 139.8 16.9 173 218-399 7-219 (221)
51 KOG0120 Splicing factor U2AF, 99.7 5.8E-17 1.3E-21 163.1 11.0 180 220-400 289-490 (500)
52 KOG1365 RNA-binding protein Fu 99.7 6.8E-16 1.5E-20 145.4 16.5 296 220-587 60-366 (508)
53 KOG0105 Alternative splicing f 99.7 1.4E-15 3E-20 129.1 16.5 171 218-398 4-186 (241)
54 PLN03134 glycine-rich RNA-bind 99.6 2.4E-15 5.3E-20 130.4 12.5 94 208-301 22-116 (144)
55 KOG1456 Heterogeneous nuclear 99.6 1.7E-13 3.6E-18 129.1 25.1 296 215-584 115-492 (494)
56 KOG1548 Transcription elongati 99.6 4.2E-14 9.2E-19 132.2 17.9 178 218-401 132-351 (382)
57 KOG0105 Alternative splicing f 99.6 7.1E-14 1.5E-18 118.9 16.7 182 321-582 6-189 (241)
58 KOG1457 RNA binding protein (c 99.6 9.1E-14 2E-18 121.9 15.7 231 322-570 35-273 (284)
59 KOG0106 Alternative splicing f 99.6 5.6E-15 1.2E-19 132.9 8.1 160 221-397 2-166 (216)
60 PLN03134 glycine-rich RNA-bind 99.5 7.7E-14 1.7E-18 121.1 13.2 82 320-402 33-114 (144)
61 KOG1457 RNA binding protein (c 99.5 6.4E-13 1.4E-17 116.6 14.4 164 219-386 33-271 (284)
62 PF00076 RRM_1: RNA recognitio 99.5 1.9E-13 4.1E-18 104.1 8.3 69 223-292 1-70 (70)
63 KOG0149 Predicted RNA-binding 99.5 2.9E-13 6.3E-18 120.5 9.4 79 220-298 12-90 (247)
64 KOG0106 Alternative splicing f 99.4 2.1E-13 4.5E-18 122.9 8.4 166 322-579 2-167 (216)
65 KOG4212 RNA-binding protein hn 99.4 3.9E-12 8.5E-17 122.3 16.8 228 321-579 44-290 (608)
66 KOG0126 Predicted RNA-binding 99.4 2E-14 4.3E-19 122.0 0.7 79 219-297 34-113 (219)
67 KOG4205 RNA-binding protein mu 99.4 8.2E-13 1.8E-17 127.3 10.8 170 321-587 6-180 (311)
68 KOG1365 RNA-binding protein Fu 99.4 9.1E-12 2E-16 117.9 16.0 176 221-399 162-359 (508)
69 PLN03120 nucleic acid binding 99.4 1.7E-12 3.7E-17 120.2 11.0 77 220-299 4-80 (260)
70 KOG0121 Nuclear cap-binding pr 99.4 8.2E-13 1.8E-17 105.6 7.4 80 218-297 34-114 (153)
71 PF14259 RRM_6: RNA recognitio 99.4 1.3E-12 2.8E-17 99.4 8.2 69 223-292 1-70 (70)
72 COG0724 RNA-binding proteins ( 99.4 4.5E-12 9.8E-17 125.7 14.5 138 220-357 115-261 (306)
73 PF00076 RRM_1: RNA recognitio 99.4 2.5E-12 5.4E-17 97.9 9.7 70 324-395 1-70 (70)
74 KOG0121 Nuclear cap-binding pr 99.4 8.8E-13 1.9E-17 105.4 7.0 78 321-399 36-113 (153)
75 KOG0107 Alternative splicing f 99.4 1.3E-12 2.9E-17 110.6 7.9 76 220-300 10-86 (195)
76 KOG0122 Translation initiation 99.4 1.6E-12 3.5E-17 116.1 8.5 81 219-299 188-269 (270)
77 KOG0130 RNA-binding protein RB 99.4 9.2E-13 2E-17 106.1 6.0 82 217-298 69-151 (170)
78 KOG0125 Ataxin 2-binding prote 99.4 2.3E-12 5E-17 119.8 8.6 79 219-299 95-174 (376)
79 PLN03121 nucleic acid binding 99.3 5E-12 1.1E-16 115.0 10.2 77 219-298 4-80 (243)
80 PF14259 RRM_6: RNA recognitio 99.3 9.6E-12 2.1E-16 94.5 9.9 70 324-395 1-70 (70)
81 KOG0114 Predicted RNA-binding 99.3 7.9E-12 1.7E-16 96.0 8.9 79 218-299 16-95 (124)
82 KOG0113 U1 small nuclear ribon 99.3 1.1E-12 2.3E-17 120.5 4.5 78 321-399 101-178 (335)
83 KOG4211 Splicing factor hnRNP- 99.3 5.9E-11 1.3E-15 116.7 16.9 172 321-587 10-186 (510)
84 KOG4307 RNA binding protein RB 99.3 3.8E-11 8.2E-16 121.9 15.7 349 219-579 433-943 (944)
85 KOG0125 Ataxin 2-binding prote 99.3 1.7E-11 3.6E-16 114.1 12.2 81 321-404 96-176 (376)
86 KOG0107 Alternative splicing f 99.3 6.4E-12 1.4E-16 106.5 7.5 75 498-582 10-84 (195)
87 PF13893 RRM_5: RNA recognitio 99.3 1.5E-11 3.2E-16 88.7 8.2 56 525-580 1-56 (56)
88 KOG0126 Predicted RNA-binding 99.3 6.4E-13 1.4E-17 112.9 0.9 80 322-402 36-115 (219)
89 KOG0113 U1 small nuclear ribon 99.3 9.3E-12 2E-16 114.4 8.3 79 218-296 99-178 (335)
90 KOG4207 Predicted splicing fac 99.3 1.1E-11 2.4E-16 107.7 8.1 82 220-301 13-95 (256)
91 PLN03213 repressor of silencin 99.3 1.6E-11 3.5E-16 119.8 9.9 77 218-298 8-87 (759)
92 KOG0122 Translation initiation 99.3 1.8E-11 3.8E-16 109.5 9.1 81 321-402 189-269 (270)
93 KOG4207 Predicted splicing fac 99.3 1.2E-11 2.6E-16 107.5 7.3 80 322-402 14-93 (256)
94 KOG0114 Predicted RNA-binding 99.2 7.2E-11 1.6E-15 90.9 9.7 80 495-584 15-96 (124)
95 PLN03120 nucleic acid binding 99.2 1E-10 2.2E-15 108.5 12.4 77 322-403 5-81 (260)
96 KOG0111 Cyclophilin-type pepti 99.2 1.1E-11 2.4E-16 108.6 4.5 83 219-301 9-92 (298)
97 smart00362 RRM_2 RNA recogniti 99.2 8.5E-11 1.8E-15 89.5 8.8 71 222-294 1-72 (72)
98 KOG0130 RNA-binding protein RB 99.2 2.8E-11 6.1E-16 97.7 6.2 79 321-400 72-150 (170)
99 KOG4660 Protein Mei2, essentia 99.2 3.7E-10 8.1E-15 113.1 15.2 169 217-399 72-247 (549)
100 KOG0132 RNA polymerase II C-te 99.2 4.6E-11 1E-15 123.1 8.6 74 219-298 420-494 (894)
101 smart00360 RRM RNA recognition 99.2 1.1E-10 2.4E-15 88.6 7.9 70 225-294 1-71 (71)
102 PLN03121 nucleic acid binding 99.2 2.3E-10 4.9E-15 104.3 10.5 78 322-404 6-83 (243)
103 KOG0149 Predicted RNA-binding 99.1 7.1E-11 1.5E-15 105.4 6.2 77 321-399 12-88 (247)
104 smart00362 RRM_2 RNA recogniti 99.1 5.1E-10 1.1E-14 85.1 9.8 71 323-396 1-71 (72)
105 KOG0108 mRNA cleavage and poly 99.1 1.2E-10 2.7E-15 117.4 7.9 81 221-301 19-100 (435)
106 KOG4307 RNA binding protein RB 99.1 3.2E-09 7E-14 108.2 17.2 200 322-585 312-516 (944)
107 PLN03213 repressor of silencin 99.1 3.9E-10 8.4E-15 110.4 9.6 77 321-402 10-88 (759)
108 KOG0108 mRNA cleavage and poly 99.1 2.5E-10 5.5E-15 115.2 8.3 79 322-401 19-97 (435)
109 cd00590 RRM RRM (RNA recogniti 99.1 9.4E-10 2E-14 84.2 9.3 73 222-295 1-74 (74)
110 smart00360 RRM RNA recognition 99.1 7.4E-10 1.6E-14 83.9 8.6 70 326-396 1-70 (71)
111 KOG0111 Cyclophilin-type pepti 99.0 1.5E-10 3.3E-15 101.5 4.1 81 322-403 11-91 (298)
112 PF13893 RRM_5: RNA recognitio 99.0 2.7E-09 5.9E-14 76.8 9.0 56 338-399 1-56 (56)
113 cd00590 RRM RRM (RNA recogniti 99.0 3E-09 6.5E-14 81.3 9.9 74 323-398 1-74 (74)
114 COG0724 RNA-binding proteins ( 99.0 8.5E-09 1.8E-13 102.1 15.8 80 321-401 115-194 (306)
115 KOG4676 Splicing factor, argin 99.0 4.5E-10 9.8E-15 107.0 6.0 214 322-583 8-226 (479)
116 smart00361 RRM_1 RNA recogniti 99.0 1.3E-09 2.8E-14 82.4 7.4 60 234-293 2-69 (70)
117 KOG0128 RNA-binding protein SA 99.0 4.3E-11 9.4E-16 125.0 -2.4 238 220-581 571-813 (881)
118 KOG0129 Predicted RNA-binding 99.0 8.5E-09 1.8E-13 102.6 13.4 164 219-382 258-432 (520)
119 smart00361 RRM_1 RNA recogniti 99.0 3.2E-09 7E-14 80.2 8.2 61 335-396 2-69 (70)
120 KOG4210 Nuclear localization s 98.9 2.6E-09 5.7E-14 103.1 7.9 177 219-402 87-264 (285)
121 KOG4208 Nucleolar RNA-binding 98.9 3.8E-09 8.2E-14 92.7 6.6 80 219-298 48-129 (214)
122 KOG0415 Predicted peptidyl pro 98.9 4.1E-09 8.9E-14 99.2 6.7 81 217-297 236-317 (479)
123 KOG0128 RNA-binding protein SA 98.9 2.9E-10 6.3E-15 118.9 -1.2 146 220-399 667-812 (881)
124 KOG4454 RNA binding protein (R 98.8 2.2E-09 4.8E-14 94.4 4.0 148 220-396 9-157 (267)
125 KOG0415 Predicted peptidyl pro 98.8 9.7E-09 2.1E-13 96.7 7.3 85 317-402 235-319 (479)
126 KOG1996 mRNA splicing factor [ 98.8 6.3E-09 1.4E-13 95.5 5.4 89 494-587 277-371 (378)
127 KOG4208 Nucleolar RNA-binding 98.8 2.8E-08 6E-13 87.3 8.3 82 320-402 48-130 (214)
128 KOG4676 Splicing factor, argin 98.7 1.7E-08 3.8E-13 96.3 4.9 164 221-390 8-214 (479)
129 KOG0153 Predicted RNA-binding 98.7 4.1E-08 8.9E-13 92.7 7.2 74 219-298 227-302 (377)
130 KOG0112 Large RNA-binding prot 98.6 4.3E-08 9.2E-13 103.5 5.5 160 219-404 371-533 (975)
131 KOG0112 Large RNA-binding prot 98.5 5.1E-08 1.1E-12 102.9 4.2 158 320-582 371-530 (975)
132 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.4E-07 5.2E-12 92.6 8.2 82 321-403 405-486 (940)
133 KOG4661 Hsp27-ERE-TATA-binding 98.5 2E-07 4.3E-12 93.2 7.5 79 219-297 404-483 (940)
134 KOG0132 RNA polymerase II C-te 98.5 2.2E-07 4.8E-12 96.6 7.9 85 487-582 410-494 (894)
135 KOG2193 IGF-II mRNA-binding pr 98.5 1.2E-08 2.6E-13 98.3 -1.9 160 322-590 2-164 (584)
136 KOG0129 Predicted RNA-binding 98.4 4.9E-06 1.1E-10 83.3 14.8 162 321-564 259-432 (520)
137 KOG4209 Splicing factor RNPS1, 98.4 3.1E-07 6.7E-12 85.8 5.2 85 215-299 96-180 (231)
138 KOG0533 RRM motif-containing p 98.4 9.8E-07 2.1E-11 82.0 8.1 80 217-297 80-160 (243)
139 KOG0153 Predicted RNA-binding 98.4 1.5E-06 3.1E-11 82.5 9.2 76 320-401 227-302 (377)
140 PF11608 Limkain-b1: Limkain b 98.4 1.8E-06 4E-11 64.5 7.7 72 500-582 4-76 (90)
141 KOG0116 RasGAP SH3 binding pro 98.4 1.1E-06 2.3E-11 88.6 8.2 78 218-295 286-363 (419)
142 KOG0226 RNA-binding proteins [ 98.4 3.8E-07 8.2E-12 82.6 4.3 165 222-398 98-266 (290)
143 KOG0226 RNA-binding proteins [ 98.3 7.9E-07 1.7E-11 80.6 5.0 81 218-298 188-269 (290)
144 KOG0533 RRM motif-containing p 98.3 2.6E-06 5.5E-11 79.3 8.0 78 322-401 84-161 (243)
145 PF04059 RRM_2: RNA recognitio 98.3 5.3E-06 1.1E-10 65.7 8.6 77 221-297 2-85 (97)
146 KOG0151 Predicted splicing reg 98.3 1.2E-05 2.5E-10 83.2 12.7 89 312-401 165-256 (877)
147 PF04059 RRM_2: RNA recognitio 98.2 7.2E-06 1.6E-10 64.9 8.7 78 322-400 2-85 (97)
148 KOG0151 Predicted splicing reg 98.2 2.9E-06 6.2E-11 87.6 8.1 83 216-298 170-256 (877)
149 KOG4454 RNA binding protein (R 98.2 6.6E-07 1.4E-11 79.1 2.4 79 319-400 7-85 (267)
150 KOG4660 Protein Mei2, essentia 98.1 2.2E-06 4.8E-11 86.5 5.0 73 494-576 71-143 (549)
151 KOG4210 Nuclear localization s 98.1 2.5E-06 5.5E-11 82.6 4.8 172 321-583 88-264 (285)
152 KOG4209 Splicing factor RNPS1, 98.1 4.7E-06 1E-10 77.9 6.2 78 321-400 101-178 (231)
153 KOG2202 U2 snRNP splicing fact 98.1 1.6E-06 3.4E-11 79.2 2.4 70 518-587 78-152 (260)
154 KOG0116 RasGAP SH3 binding pro 98.0 7.2E-06 1.6E-10 82.8 6.5 78 322-401 289-366 (419)
155 KOG2193 IGF-II mRNA-binding pr 98.0 6.1E-07 1.3E-11 86.8 -1.7 156 221-404 2-159 (584)
156 PF11608 Limkain-b1: Limkain b 97.8 7.4E-05 1.6E-09 56.1 6.6 69 221-299 3-77 (90)
157 KOG2416 Acinus (induces apopto 97.8 1.7E-05 3.7E-10 80.4 3.9 84 494-588 440-527 (718)
158 PF08777 RRM_3: RNA binding mo 97.8 8.9E-05 1.9E-09 60.3 7.2 73 499-582 2-79 (105)
159 PF08952 DUF1866: Domain of un 97.7 0.00026 5.6E-09 60.0 9.2 86 494-584 23-108 (146)
160 KOG1995 Conserved Zn-finger pr 97.7 4.5E-05 9.8E-10 73.3 5.2 84 217-300 63-155 (351)
161 KOG2314 Translation initiation 97.6 0.00018 4E-09 72.7 8.0 84 497-584 57-145 (698)
162 KOG4849 mRNA cleavage factor I 97.5 0.00024 5.3E-09 67.4 7.0 78 322-400 81-160 (498)
163 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00038 8.3E-09 55.6 6.8 71 499-581 7-90 (100)
164 KOG1996 mRNA splicing factor [ 97.4 0.0001 2.3E-09 68.3 2.8 79 320-399 280-364 (378)
165 KOG1995 Conserved Zn-finger pr 97.3 0.00021 4.6E-09 68.8 4.5 83 320-403 65-155 (351)
166 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00068 1.5E-08 47.5 5.7 52 499-562 2-53 (53)
167 KOG1855 Predicted RNA-binding 97.3 0.00023 5E-09 69.7 3.7 65 495-569 228-310 (484)
168 PF08777 RRM_3: RNA binding mo 97.2 0.00063 1.4E-08 55.4 5.4 70 322-397 2-75 (105)
169 COG5175 MOT2 Transcriptional r 97.2 0.00089 1.9E-08 63.4 6.4 80 322-402 115-203 (480)
170 COG5175 MOT2 Transcriptional r 97.1 0.0018 4E-08 61.4 7.3 82 498-583 114-203 (480)
171 KOG2202 U2 snRNP splicing fact 96.9 0.00039 8.5E-09 63.9 1.6 65 336-402 83-148 (260)
172 KOG2314 Translation initiation 96.9 0.0018 4E-08 65.7 6.5 81 321-402 58-144 (698)
173 KOG4849 mRNA cleavage factor I 96.9 0.00083 1.8E-08 63.9 3.7 78 219-296 79-159 (498)
174 PF08952 DUF1866: Domain of un 96.8 0.0046 1E-07 52.5 6.8 73 220-300 27-108 (146)
175 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0039 8.5E-08 43.6 5.0 52 221-279 2-53 (53)
176 KOG0115 RNA-binding protein p5 96.6 0.0038 8.3E-08 57.4 5.6 100 275-398 7-110 (275)
177 KOG3152 TBP-binding protein, a 96.4 0.0018 3.8E-08 59.5 2.2 72 322-394 75-158 (278)
178 KOG1855 Predicted RNA-binding 96.3 0.0044 9.5E-08 61.1 4.5 67 216-282 227-306 (484)
179 KOG3152 TBP-binding protein, a 96.3 0.0039 8.4E-08 57.3 3.5 72 219-290 73-157 (278)
180 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.015 3.2E-07 46.6 6.1 76 220-296 6-89 (100)
181 PF08675 RNA_bind: RNA binding 95.7 0.059 1.3E-06 40.8 7.1 56 322-385 9-64 (87)
182 PF15023 DUF4523: Protein of u 95.7 0.046 9.9E-07 45.8 6.9 55 522-579 104-158 (166)
183 KOG4285 Mitotic phosphoprotein 95.1 0.06 1.3E-06 50.8 6.6 67 500-579 199-266 (350)
184 KOG2416 Acinus (induces apopto 94.9 0.029 6.2E-07 57.8 4.3 77 318-400 441-520 (718)
185 PF15519 RBM39linker: linker b 94.7 0.02 4.3E-07 42.9 1.8 69 417-517 5-73 (73)
186 KOG2591 c-Mpl binding protein, 94.7 0.045 9.8E-07 55.9 4.9 72 496-579 173-248 (684)
187 PF07576 BRAP2: BRCA1-associat 94.4 0.42 9.2E-06 39.1 9.1 75 322-399 14-92 (110)
188 PF04847 Calcipressin: Calcipr 94.4 0.1 2.2E-06 47.1 6.0 60 522-582 9-70 (184)
189 PF11767 SET_assoc: Histone ly 94.3 0.18 3.9E-06 36.9 6.2 52 522-577 14-65 (66)
190 KOG2135 Proteins containing th 94.2 0.024 5.1E-07 56.8 1.8 77 217-299 369-446 (526)
191 KOG0115 RNA-binding protein p5 94.0 0.15 3.4E-06 47.2 6.4 60 500-569 33-96 (275)
192 PF10309 DUF2414: Protein of u 93.6 0.31 6.8E-06 35.0 6.1 54 322-383 6-62 (62)
193 PF15023 DUF4523: Protein of u 93.4 0.18 4E-06 42.3 5.3 69 322-399 87-159 (166)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.14 3.1E-06 46.0 5.1 69 322-390 8-82 (176)
195 KOG2253 U1 snRNP complex, subu 93.0 0.027 5.8E-07 59.0 -0.2 122 215-346 35-160 (668)
196 PF08675 RNA_bind: RNA binding 92.7 0.59 1.3E-05 35.6 6.6 53 500-566 11-63 (87)
197 KOG4574 RNA-binding protein (c 92.7 0.19 4.1E-06 54.3 5.4 64 522-586 312-377 (1007)
198 KOG0670 U4/U6-associated splic 92.5 0.066 1.4E-06 55.0 1.8 11 503-513 630-640 (752)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.17 3.6E-06 45.7 3.7 69 219-287 6-81 (176)
200 KOG2135 Proteins containing th 91.7 0.1 2.3E-06 52.4 2.1 59 522-582 387-445 (526)
201 KOG2253 U1 snRNP complex, subu 91.4 0.28 6E-06 51.8 4.9 70 495-578 37-106 (668)
202 KOG4574 RNA-binding protein (c 90.8 0.49 1.1E-05 51.3 6.1 74 324-403 301-375 (1007)
203 KOG0804 Cytoplasmic Zn-finger 90.5 0.75 1.6E-05 46.3 6.8 68 321-391 74-142 (493)
204 KOG0804 Cytoplasmic Zn-finger 90.2 1.7 3.7E-05 43.8 8.9 67 220-288 74-142 (493)
205 KOG2068 MOT2 transcription fac 89.8 1 2.2E-05 43.9 6.8 82 322-404 78-165 (327)
206 KOG4285 Mitotic phosphoprotein 89.5 1.3 2.9E-05 42.1 7.2 73 321-402 197-270 (350)
207 KOG2591 c-Mpl binding protein, 89.0 0.86 1.9E-05 47.0 5.9 69 322-397 176-247 (684)
208 PF07576 BRAP2: BRCA1-associat 88.9 4 8.6E-05 33.5 8.8 67 220-288 12-81 (110)
209 PF04847 Calcipressin: Calcipr 88.5 1.4 3.1E-05 39.8 6.5 60 334-400 8-69 (184)
210 PF07292 NID: Nmi/IFP 35 domai 88.4 0.34 7.4E-06 37.7 2.1 72 265-343 1-74 (88)
211 PF10309 DUF2414: Protein of u 86.9 4.2 9.1E-05 29.3 6.8 53 499-565 6-62 (62)
212 KOG4368 Predicted RNA binding 86.7 0.88 1.9E-05 47.2 4.4 9 7-15 554-562 (757)
213 KOG2318 Uncharacterized conser 85.7 3.6 7.9E-05 43.0 8.2 86 318-404 171-310 (650)
214 KOG2068 MOT2 transcription fac 83.4 0.48 1E-05 46.0 0.9 58 526-583 98-163 (327)
215 KOG2318 Uncharacterized conser 82.9 6.7 0.00015 41.1 8.7 81 494-583 170-308 (650)
216 PF10567 Nab6_mRNP_bdg: RNA-re 78.7 66 0.0014 31.1 13.6 166 219-385 14-213 (309)
217 KOG1847 mRNA splicing factor [ 78.1 1.7 3.6E-05 45.7 2.7 10 224-233 849-858 (878)
218 PF07292 NID: Nmi/IFP 35 domai 76.7 6.2 0.00013 30.8 4.9 33 366-398 1-33 (88)
219 PF03880 DbpA: DbpA RNA bindin 75.4 13 0.00028 28.0 6.3 59 331-399 11-74 (74)
220 PF14111 DUF4283: Domain of un 74.9 4.5 9.6E-05 35.4 4.3 120 221-355 16-139 (153)
221 PF03880 DbpA: DbpA RNA bindin 74.0 17 0.00037 27.3 6.7 55 522-580 15-74 (74)
222 PF11767 SET_assoc: Histone ly 73.2 22 0.00048 26.1 6.7 55 332-396 11-65 (66)
223 KOG2891 Surface glycoprotein [ 68.4 2.6 5.6E-05 39.5 1.2 65 321-385 149-244 (445)
224 KOG4019 Calcineurin-mediated s 62.9 8.3 0.00018 34.2 3.2 58 523-581 30-88 (193)
225 TIGR02542 B_forsyth_147 Bacter 57.8 56 0.0012 26.6 6.7 114 227-373 10-129 (145)
226 KOG4410 5-formyltetrahydrofola 52.9 45 0.00099 31.8 6.4 52 317-374 326-378 (396)
227 PF10567 Nab6_mRNP_bdg: RNA-re 50.8 40 0.00088 32.5 5.8 82 319-400 13-106 (309)
228 PF03439 Spt5-NGN: Early trans 48.9 27 0.00059 27.0 3.8 36 534-569 33-68 (84)
229 KOG4483 Uncharacterized conser 47.4 37 0.00081 34.0 5.2 55 321-382 391-446 (528)
230 PF03468 XS: XS domain; Inter 45.2 24 0.00052 29.3 3.1 59 221-282 9-77 (116)
231 PF07530 PRE_C2HC: Associated 43.7 32 0.0007 25.4 3.3 60 336-399 2-62 (68)
232 KOG2891 Surface glycoprotein [ 42.1 6.8 0.00015 36.8 -0.6 74 497-570 148-247 (445)
233 PF03468 XS: XS domain; Inter 42.0 30 0.00066 28.7 3.2 58 499-558 9-69 (116)
234 PRK14548 50S ribosomal protein 41.0 77 0.0017 24.6 5.1 57 324-383 23-81 (84)
235 COG5470 Uncharacterized conser 40.0 73 0.0016 25.1 4.7 49 514-562 14-70 (96)
236 KOG2295 C2H2 Zn-finger protein 39.5 5.8 0.00012 41.3 -1.6 65 321-385 231-295 (648)
237 smart00596 PRE_C2HC PRE_C2HC d 38.8 29 0.00063 25.6 2.3 60 336-399 2-62 (69)
238 PF11671 Apis_Csd: Complementa 38.5 3.4 7.5E-05 33.9 -2.7 9 222-230 87-95 (146)
239 KOG4019 Calcineurin-mediated s 38.5 1.4E+02 0.0029 26.8 6.7 75 322-403 11-91 (193)
240 PF15513 DUF4651: Domain of un 37.6 46 0.001 23.9 3.1 23 519-541 5-27 (62)
241 KOG1295 Nonsense-mediated deca 37.5 46 0.00099 33.4 4.2 74 322-395 8-84 (376)
242 TIGR03636 L23_arch archaeal ri 36.3 1.1E+02 0.0023 23.3 5.1 56 324-382 16-73 (77)
243 PRK03717 ribonuclease P protei 35.6 2.4E+02 0.0052 23.5 7.7 66 511-579 28-99 (120)
244 COG5638 Uncharacterized conser 34.8 1.3E+02 0.0028 30.4 6.7 40 363-403 258-299 (622)
245 KOG4483 Uncharacterized conser 34.0 1E+02 0.0022 31.1 5.9 56 219-281 390-446 (528)
246 cd04908 ACT_Bt0572_1 N-termina 33.2 1.8E+02 0.004 20.8 7.6 46 522-568 15-62 (66)
247 PF07237 DUF1428: Protein of u 33.2 96 0.0021 25.0 4.6 54 512-565 12-85 (103)
248 PF03439 Spt5-NGN: Early trans 32.5 69 0.0015 24.7 3.8 34 347-385 33-66 (84)
249 PF11823 DUF3343: Protein of u 32.1 73 0.0016 23.7 3.7 25 547-571 3-27 (73)
250 PRK08559 nusG transcription an 31.5 1.2E+02 0.0026 26.5 5.6 48 522-569 22-70 (153)
251 COG1369 POP5 RNase P/RNase MRP 28.7 3.5E+02 0.0076 22.7 8.4 73 505-579 22-99 (124)
252 KOG4410 5-formyltetrahydrofola 27.4 1.4E+02 0.0031 28.6 5.4 49 221-275 331-380 (396)
253 KOG4213 RNA-binding protein La 27.1 1.3E+02 0.0029 26.7 4.9 41 522-564 123-169 (205)
254 COG5193 LHP1 La protein, small 25.8 29 0.00062 34.9 0.7 59 322-380 175-243 (438)
255 PF08734 GYD: GYD domain; Int 24.7 3.3E+02 0.0071 21.4 6.4 65 521-587 21-88 (91)
256 KOG1882 Transcriptional regula 24.5 64 0.0014 30.1 2.6 14 361-374 214-227 (293)
257 KOG4365 Uncharacterized conser 24.1 21 0.00045 36.2 -0.6 75 221-296 4-79 (572)
258 KOG2217 U4/U6.U5 snRNP associa 22.7 35 0.00076 36.8 0.6 10 526-535 549-558 (705)
259 KOG2217 U4/U6.U5 snRNP associa 21.0 46 0.001 35.9 1.1 16 551-566 622-637 (705)
260 KOG4365 Uncharacterized conser 20.9 21 0.00045 36.2 -1.3 79 322-402 4-82 (572)
261 PRK10905 cell division protein 20.2 2.7E+02 0.0059 27.5 6.0 60 496-568 245-309 (328)
No 1
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.6e-53 Score=446.23 Aligned_cols=368 Identities=47% Similarity=0.700 Sum_probs=269.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 215 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
..+...++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||.|+|+.|.|++|.|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHH
Q 007742 295 PSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLE 374 (591)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~ 374 (591)
++............... ...+...+|||+|||..+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~----~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQP----GDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred ecchhhhhhhhcccccC----CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 77554333221111111 11223589999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCC
Q 007742 375 HAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAP 454 (591)
Q Consensus 375 ~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (591)
+|..|+..|+|. .|.|+.|.|.++.+....................+..........+...+...... +....++
T Consensus 240 ~A~~A~~~l~g~-~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 314 (457)
T TIGR01622 240 EAKEALEVMNGF-ELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGD----GGLLIPG 314 (457)
T ss_pred HHHHHHHhcCCc-EECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCC----ccccCCC
Confidence 999999999995 79999999999886544333322222222222233333333444444433332211 0000000
Q ss_pred cccCccccccccccCcCC---CCCCCCCCCCCCcccccccc-ccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhc
Q 007742 455 AVNGSAVNQQAISLPVVG---QPAVPVPAVTAPVIPNMAAE-FIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECS 530 (591)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~ 530 (591)
.................. +.............+..... ....++.||+|.||+++.+..++.++.+|.+||.++|.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~ 394 (457)
T TIGR01622 315 TGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECS 394 (457)
T ss_pred ccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHH
Confidence 000000000000000000 00000000011111111111 13567899999999999999999999999999999999
Q ss_pred cccceEEEEEe-cCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhhhccCC
Q 007742 531 KYGRVKHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKFKS 591 (591)
Q Consensus 531 ~~G~V~~v~l~-~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~ 591 (591)
+||.|+.|.|. ....|++||+|.++++|..|++.|||+.|+|+.|.|.|++++.|.+.|+.
T Consensus 395 k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~~~ 456 (457)
T TIGR01622 395 KYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMSCLP 456 (457)
T ss_pred hcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhcCC
Confidence 99999999886 56789999999999999999999999999999999999999999999874
No 2
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=1e-53 Score=418.27 Aligned_cols=369 Identities=50% Similarity=0.749 Sum_probs=293.7
Q ss_pred ccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCC
Q 007742 209 VVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLG 288 (591)
Q Consensus 209 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g 288 (591)
....+..+++..+++|+..|+..+++.+|.++|+.+|+|.+|.+|.|.+++.++|.|||+|.+.+.+..||.|.|+.++|
T Consensus 168 ~~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg 247 (549)
T KOG0147|consen 168 ASRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLG 247 (549)
T ss_pred ccccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccC
Confidence 33445566778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEE
Q 007742 289 QPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFV 368 (591)
Q Consensus 289 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~V 368 (591)
.+|.|+.+....+.....++... .....+|..+ |||+||..++++++|..+|++||.|..|.+..+..+|.++||+||
T Consensus 248 ~pv~vq~sEaeknr~a~~s~a~~-~k~~~~p~~r-l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi 325 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAANASPALQ-GKGFTGPMRR-LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFI 325 (549)
T ss_pred ceeEecccHHHHHHHHhcccccc-ccccccchhh-hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceE
Confidence 99999999887776443333222 2222333323 999999999999999999999999999999999889999999999
Q ss_pred EeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCC
Q 007742 369 QFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAG 448 (591)
Q Consensus 369 ef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (591)
+|.+.++|.+|+..||| +++.|+.|+|...++............++...+.+++.++..+.++++.++.......-...
T Consensus 326 ~f~~~~~ar~a~e~lng-felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~ 404 (549)
T KOG0147|consen 326 TFVNKEDARKALEQLNG-FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPST 404 (549)
T ss_pred EEecHHHHHHHHHHhcc-ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccch
Confidence 99999999999999999 89999999999998887766665555566656667776666666666666554332111111
Q ss_pred cCCCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHH
Q 007742 449 SLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEE 528 (591)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~ 528 (591)
....... ...........+.. ... .+.|....+...+++.|++|+||++|.+.|.+.|..+|.+||.+.
T Consensus 405 ~~~~l~~-----~~~~~~~~~~~~~~--~~~----~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Ee 473 (549)
T KOG0147|consen 405 AISALLL-----LAKLASAAQFNGVV--RVR----SVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEE 473 (549)
T ss_pred hhhHHHh-----ccccchHHhhcCCc--Ccc----ccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHH
Confidence 0000000 00000000000000 000 111221223334899999999999999999999999999999999
Q ss_pred hccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhhhccCC
Q 007742 529 CSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKFKS 591 (591)
Q Consensus 529 f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~ 591 (591)
|.+||.|..|.|.+++.||+||.|.+.+.|..|+.+|||++|.|+.|.+.|++...|+.+||+
T Consensus 474 c~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~ 536 (549)
T KOG0147|consen 474 CGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPD 536 (549)
T ss_pred HHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 3
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=8.4e-48 Score=412.67 Aligned_cols=304 Identities=25% Similarity=0.400 Sum_probs=231.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcC------------CCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcC
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKA------------GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSG 283 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~------------G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g 283 (591)
.+...++|||+|||+.+|+++|.++|..+ +.|..+.+ +..+|||||+|.+.++|..||.|+|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 34567999999999999999999999975 23444443 4568999999999999999999999
Q ss_pred CccCCeeEEeccCccccccccccCC-----CC---C-----CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE
Q 007742 284 QLLLGQPVMVKPSEAEKNLVQSNTS-----AG---G-----TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL 350 (591)
Q Consensus 284 ~~i~g~~i~v~~~~~~~~~~~~~~~-----~~---~-----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~ 350 (591)
+.|.|..|+|............... .. . ..........++|||+|||..+++++|.++|..||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 9999999999755433211100000 00 0 000111223579999999999999999999999999999
Q ss_pred EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHH
Q 007742 351 VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSR 430 (591)
Q Consensus 351 v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (591)
+.|+.+..+|.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.++.......... ....
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~-~~~~~~l~v~~a~~~~~~~~~~-------~~~~---------- 386 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGK-DTGDNKLHVQRACVGANQATID-------TSNG---------- 386 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEECccCCCCCCcc-------cccc----------
Confidence 999998888999999999999999999999999996 7999999999875321100000 0000
Q ss_pred HHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCC
Q 007742 431 ALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPA 510 (591)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~ 510 (591)
..+. .. ....+..........++.+|+|.||+.+.
T Consensus 387 ---------------------~~~~---------~~---------------~~~~~~~~~~~~~~~~s~v~~l~N~~~~~ 421 (509)
T TIGR01642 387 ---------------------MAPV---------TL---------------LAKALSQSILQIGGKPTKVVQLTNLVTGD 421 (509)
T ss_pred ---------------------cccc---------cc---------------ccccchhhhccccCCCceEEEeccCCchh
Confidence 0000 00 00000000001124577899999999888
Q ss_pred CCCCchhhhhHHHHHHHHhccccceEEEEEecC--------CCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCc
Q 007742 511 METDPDFDLEIQGDVEEECSKYGRVKHIYVDKR--------SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKP 582 (591)
Q Consensus 511 ~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~--------~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~ 582 (591)
.+.++++|.+|.++|.++|++||.|+.|.|+.+ +.|+|||+|.++++|.+|+..|||+.|+|+.|.|.|+++
T Consensus 422 ~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 422 DLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 888889999999999999999999999999753 358999999999999999999999999999999999999
Q ss_pred hhhhhc
Q 007742 583 EDYEAK 588 (591)
Q Consensus 583 ~~~~~~ 588 (591)
..|.+.
T Consensus 502 ~~~~~~ 507 (509)
T TIGR01642 502 DCYKAG 507 (509)
T ss_pred HHhhcc
Confidence 999864
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.6e-41 Score=347.04 Aligned_cols=335 Identities=19% Similarity=0.307 Sum_probs=225.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
..+|||+|||+.+|+++|+++|..||+|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 478999999999999999999999999999999999999999999999999999999999 6999999999999998754
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
.... .....|||+|||..+++++|..+|.+||.|..+.++.+..++.++|||||+|.+.++|..
T Consensus 83 ~~~~----------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 83 SSDS----------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred cccc----------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 3211 113689999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHhcCCeeeCC--eEEEEEEecCCCCCCcccccC--CCCCCCCCCCccccH----HHHHHHHHHhhhcCCccccCCcC
Q 007742 379 AQSALNGKLEIVG--RTLKVSSVTDHVGTQDTAAKS--ADFDDDDGGGLALNA----QSRALLMQKLDRTGIATSIAGSL 450 (591)
Q Consensus 379 a~~~l~g~~~~~g--~~l~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 450 (591)
|+..|||. .+.| .+|.|.++............. ............... .......................
T Consensus 147 ai~~l~g~-~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
T TIGR01661 147 AIKTLNGT-TPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAV 225 (352)
T ss_pred HHHHhCCC-ccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhh
Confidence 99999996 5776 567787765432111100000 000000000000000 00000000000000000000000
Q ss_pred CCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhc
Q 007742 451 GVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECS 530 (591)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~ 530 (591)
........ ...++.. ....++... ...................+.+|+|.|| |..++ +++|.++|+
T Consensus 226 ~~~~~~~~-~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lfV~NL--~~~~~--------e~~L~~~F~ 291 (352)
T TIGR01661 226 LAHQQQQH-AVAQQHA-AQRASPPAT--DGQTAGLAAGAQIAASDGAGYCIFVYNL--SPDTD--------ETVLWQLFG 291 (352)
T ss_pred hhhhhhhc-ccccccc-cccCCCccc--cccccccccCCCCCCCCCCCcEEEEeCC--CCCCC--------HHHHHHHHH
Confidence 00000000 0000000 000000000 0000000000001111334558999999 78777 899999999
Q ss_pred cccceEEEEEecC-----CCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhh
Q 007742 531 KYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 585 (591)
Q Consensus 531 ~~G~V~~v~l~~~-----~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 585 (591)
+||.|..|.|..+ ++|||||+|.+.++|..|+..|||..|+|+.|.|.|+..+.+
T Consensus 292 ~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 292 PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999988543 589999999999999999999999999999999999987654
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.2e-40 Score=341.44 Aligned_cols=177 Identities=20% Similarity=0.363 Sum_probs=153.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|||+|||+.+|+++|+++|..||.|..|.++.++.+|.++|||||+|.+.++|..|| .|||..|.|+.|+|.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4589999999999999999999999999999999999999999999999999999999999 699999999999998643
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
......... ...........+|||+|||+.+++++|+++|+.||.|..|.|..+..++.++|||||+|.+.++|.
T Consensus 186 ~~p~a~~~~-----~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 186 NMPQAQPII-----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccccccc-----ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 321110000 000011122379999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHhcCCeeeCCeEEEEEEecC
Q 007742 378 AAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 378 ~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
.|+..||+. .|+|+.|.|.++..
T Consensus 261 kAI~amNg~-elgGr~LrV~kAi~ 283 (612)
T TIGR01645 261 EAIASMNLF-DLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHhCCC-eeCCeEEEEEecCC
Confidence 999999995 89999999998764
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=278.81 Aligned_cols=307 Identities=20% Similarity=0.323 Sum_probs=225.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
...|+|.-||..+|+++|+.+|...|.|++|++++|+.+|.+-|||||.|.++++|.+|+ .+||..+..++|+|.++.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 467999999999999999999999999999999999999999999999999999999999 7999999999999999876
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
...... ...|||.+||..+|..+|.++|++||.|..-+|+.+..+|.++|.+||.|....+|..
T Consensus 121 Ss~~Ik----------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 121 SSDSIK----------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEE 184 (360)
T ss_pred Chhhhc----------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHH
Confidence 443222 2689999999999999999999999999888999998899999999999999999999
Q ss_pred HHHHhcCCeeeCC--eEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcc
Q 007742 379 AQSALNGKLEIVG--RTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAV 456 (591)
Q Consensus 379 a~~~l~g~~~~~g--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (591)
||..|||. .-.| .+|.|.++.... ....++.+.+.+.... ....+..+......
T Consensus 185 AIk~lNG~-~P~g~tepItVKFannPs----------------------q~t~~a~ls~ly~sp~-rr~~Gp~hh~~~r~ 240 (360)
T KOG0145|consen 185 AIKGLNGQ-KPSGCTEPITVKFANNPS----------------------QKTNQALLSQLYQSPA-RRYGGPMHHQAQRF 240 (360)
T ss_pred HHHhccCC-CCCCCCCCeEEEecCCcc----------------------cccchhhhHHhhcCcc-ccCCCcccchhhhh
Confidence 99999996 4566 488888874321 0111111111111111 00000000000000
Q ss_pred cCccccccccccCcCCCCCCCCCCCCCCcccccc---ccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhcccc
Q 007742 457 NGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMA---AEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG 533 (591)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G 533 (591)
......++......+ +++.......+. .+.......||||.|| ...+. +.-|.++|..||
T Consensus 241 r~~~~~~~~~~~~rf-------sP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL--spd~d--------e~~LWQlFgpFG 303 (360)
T KOG0145|consen 241 RLDNLLNPHAAQARF-------SPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL--SPDAD--------ESILWQLFGPFG 303 (360)
T ss_pred ccccccchhhhhccC-------CCccccccceeeeeccCCCCCCeeEEEEEec--CCCch--------HhHHHHHhCccc
Confidence 000000000000000 001100111110 1112334689999999 33332 678999999999
Q ss_pred ceEEEEEec-----CCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 534 RVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 534 ~V~~v~l~~-----~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
.|.+|++.+ ..+||+||.+.+.++|..||..|||..++++.|+|+|-+-+
T Consensus 304 Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 304 AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999854 36899999999999999999999999999999999997654
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.6e-37 Score=329.66 Aligned_cols=334 Identities=23% Similarity=0.304 Sum_probs=229.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcccc
Q 007742 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEK 300 (591)
Q Consensus 222 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~~ 300 (591)
.|||+|||+.+||++|.++|..||.|.+|+|++|..|+.++|||||+|.+.++|.+|| .+|+..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999999999999999999999999999 699999999999999875432
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHH
Q 007742 301 NLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380 (591)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~ 380 (591)
..... ...+|||+|||..+++++|+++|+.||.|..|.|..+. ++.++|||||+|.+.++|..|+
T Consensus 82 ~~~~~--------------~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai 146 (562)
T TIGR01628 82 SLRRS--------------GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAI 146 (562)
T ss_pred ccccc--------------CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHH
Confidence 11110 12579999999999999999999999999999998875 7888999999999999999999
Q ss_pred HHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCC---cCCC---CC
Q 007742 381 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAG---SLGV---AP 454 (591)
Q Consensus 381 ~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~ 454 (591)
..|+|. .+.|+.|.|............ ....+...-..++.... ....+...+...+....+.. ..+. ..
T Consensus 147 ~~lng~-~~~~~~i~v~~~~~~~~~~~~--~~~~~~~l~V~nl~~~~-tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~a 222 (562)
T TIGR01628 147 QKVNGM-LLNDKEVYVGRFIKKHEREAA--PLKKFTNLYVKNLDPSV-NEDKLRELFAKFGEITSAAVMKDGSGRSRGFA 222 (562)
T ss_pred HHhccc-EecCceEEEeccccccccccc--cccCCCeEEEeCCCCcC-CHHHHHHHHHhcCCEEEEEEEECCCCCcccEE
Confidence 999996 699999999765443322100 00000000001111111 11222222222221111100 0000 01
Q ss_pred cccCccccccccccCc-CCCC--------CCCCCCCCCC---------ccccc-cccccCCCcceEEEeccCCCCCCCCc
Q 007742 455 AVNGSAVNQQAISLPV-VGQP--------AVPVPAVTAP---------VIPNM-AAEFIGSPSECLLLKNMFDPAMETDP 515 (591)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~---------~~~~~-~~~~~~~~s~~l~v~Nl~~p~~~~~~ 515 (591)
++.......+...+.. .+.. ...+...... ..... ..........+|+|+|| +..++
T Consensus 223 fV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl--~~~~~-- 298 (562)
T TIGR01628 223 FVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNL--DDTVT-- 298 (562)
T ss_pred EEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCC--CCccC--
Confidence 1111111111111000 0000 0000000000 00000 00112345667999999 77777
Q ss_pred hhhhhHHHHHHHHhccccceEEEEEec----CCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchh
Q 007742 516 DFDLEIQGDVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 584 (591)
Q Consensus 516 ~~~~~~~edl~~~f~~~G~V~~v~l~~----~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 584 (591)
+++|+++|+.||.|.+|.+.. .++|+|||+|.+.++|.+|+..|||+.|+|+.|.|.|+..+.
T Consensus 299 ------~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 299 ------DEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred ------HHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 899999999999999998854 357999999999999999999999999999999999988643
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.7e-35 Score=311.33 Aligned_cols=336 Identities=18% Similarity=0.160 Sum_probs=216.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH---HcCCccCCeeEEecc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA---LSGQLLLGQPVMVKP 295 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~---l~g~~i~g~~i~v~~ 295 (591)
++++|||+|||+.+|+++|.++|..||.|..|.++. ++|||||+|.+.++|..|+. +++..|.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 368999999999999999999999999999999985 36899999999999999995 478899999999999
Q ss_pred CccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
+............ ... ........|+|.||++.+++++|+++|++||.|..|.|..+. ..|+|||+|.+.++
T Consensus 75 s~~~~~~~~~~~~--~~~--~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~ 146 (481)
T TIGR01649 75 STSQEIKRDGNSD--FDS--AGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNS 146 (481)
T ss_pred cCCcccccCCCCc--ccC--CCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHH
Confidence 8654321111000 000 001112579999999999999999999999999999987653 24689999999999
Q ss_pred HHHHHHHhcCCeeeC-C-eEEEEEEecCCCCCCccc-ccCCCCCCCCC---CCccccHHHHHHHHHHhhhcCCccccCCc
Q 007742 376 AKAAQSALNGKLEIV-G-RTLKVSSVTDHVGTQDTA-AKSADFDDDDG---GGLALNAQSRALLMQKLDRTGIATSIAGS 449 (591)
Q Consensus 376 a~~a~~~l~g~~~~~-g-~~l~v~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (591)
|.+|++.|||. .|. | +.|.|.+++...-....+ ....++..... ....+...... ....+............
T Consensus 147 A~~A~~~Lng~-~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 224 (481)
T TIGR01649 147 AQHAKAALNGA-DIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQ-RQPALLGQHPSSYGHDG 224 (481)
T ss_pred HHHHHHHhcCC-cccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccc-cccccccCCCccCCCcc
Confidence 99999999997 454 3 689999987543211111 11101100000 00000000000 00000000000000000
Q ss_pred CCCC----C-cccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCC-CCCCchhhhhHHH
Q 007742 450 LGVA----P-AVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPA-METDPDFDLEIQG 523 (591)
Q Consensus 450 ~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~-~~~~~~~~~~~~e 523 (591)
++.. . ...+...... ...+..+.+ .......+..+.........++.+|+|+|| +. .++ ++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL--~~~~vt--------~~ 291 (481)
T TIGR01649 225 YSSHGGPLAPLAGGDRMGPP-HGPPSRYRP--AYEAAPLAPAISSYGPAGGGPGSVLMVSGL--HQEKVN--------CD 291 (481)
T ss_pred cccCCCCCCcccccccCCCc-ccCCCCCcc--cccccccCccccccCCCCCCCCCEEEEeCC--CCCCCC--------HH
Confidence 0000 0 0000000000 000000000 000000000011111123467889999999 65 466 89
Q ss_pred HHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 524 DVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 524 dl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
+|.++|+.||.|..|.|....+|+|||+|.+.++|..|+..|||..|.|+.|.|.++..+
T Consensus 292 ~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 292 RLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 999999999999999998778899999999999999999999999999999999998654
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5e-36 Score=311.16 Aligned_cols=245 Identities=21% Similarity=0.340 Sum_probs=204.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccC-CeeEEecc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLL-GQPVMVKP 295 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~-g~~i~v~~ 295 (591)
...++|||+|||+++++++|.++|.+||.|.+|+|+.| .+|.++|||||+|.+.++|..|| .||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 35699999999999999999999999999999999999 78999999999999999999999 68998875 77776654
Q ss_pred CccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-ccCCCCCcccEEEEEeCCH
Q 007742 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLP-LDIETGQCKGFGFVQFAQL 373 (591)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~-~~~~~~~~~g~a~Vef~~~ 373 (591)
+.. .++|||.|||..+++++|.++|.+++. +..+.+. .....+.++|||||+|.+.
T Consensus 135 S~~----------------------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ 192 (578)
T TIGR01648 135 SVD----------------------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESH 192 (578)
T ss_pred ccc----------------------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCH
Confidence 321 278999999999999999999999963 4444333 3333566799999999999
Q ss_pred HHHHHHHHHhc-CCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCC
Q 007742 374 EHAKAAQSALN-GKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGV 452 (591)
Q Consensus 374 ~~a~~a~~~l~-g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (591)
++|..|+..|+ +.+.+.|+.|.|.++........
T Consensus 193 edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~--------------------------------------------- 227 (578)
T TIGR01648 193 RAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE--------------------------------------------- 227 (578)
T ss_pred HHHHHHHHHhhccceEecCceEEEEeecccccccc---------------------------------------------
Confidence 99999998876 44678999999998743210000
Q ss_pred CCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccc
Q 007742 453 APAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY 532 (591)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~ 532 (591)
......++|+|.|| +..++ +++|.++|+.|
T Consensus 228 ----------------------------------------~~~~~~k~LfVgNL--~~~~t--------ee~L~~~F~~f 257 (578)
T TIGR01648 228 ----------------------------------------DVMAKVKILYVRNL--MTTTT--------EEIIEKSFSEF 257 (578)
T ss_pred ----------------------------------------cccccccEEEEeCC--CCCCC--------HHHHHHHHHhc
Confidence 00112357999999 77777 89999999999
Q ss_pred --cceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 533 --GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 533 --G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
|.|..|.+. ++||||+|.+.++|.+|++.|||..|+|+.|.|.|+++.
T Consensus 258 ~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 258 KPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred CCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 999999776 579999999999999999999999999999999999874
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.4e-36 Score=286.14 Aligned_cols=251 Identities=20% Similarity=0.332 Sum_probs=215.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCcc-CCeeEEec
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLL-LGQPVMVK 294 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i-~g~~i~v~ 294 (591)
...++.|||+.||.++.|++|..+|.+.|+|.+++||.|+.+|.++|||||.|.+.++|+.|+ .||+..| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 356799999999999999999999999999999999999999999999999999999999999 6999987 68888887
Q ss_pred cCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeccC-CCCCcccEEEEEeCC
Q 007742 295 PSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLPLDI-ETGQCKGFGFVQFAQ 372 (591)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~-~~~~~~g~a~Vef~~ 372 (591)
.+.. ++.|||+|||..+++++|++.|.++++ |..|.|.... ...+.+|||||+|.+
T Consensus 160 ~Sva----------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~ 217 (506)
T KOG0117|consen 160 VSVA----------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYES 217 (506)
T ss_pred Eeee----------------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeec
Confidence 6543 279999999999999999999999984 6667666554 245679999999999
Q ss_pred HHHHHHHHHH-hcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCC
Q 007742 373 LEHAKAAQSA-LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLG 451 (591)
Q Consensus 373 ~~~a~~a~~~-l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (591)
...|..|-.. +++++.+.|..+.|.|+.+.....-. .
T Consensus 218 H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded------------------------~------------------ 255 (506)
T KOG0117|consen 218 HRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED------------------------T------------------ 255 (506)
T ss_pred chhHHHHHhhccCCceeecCCcceeeccCcccCCChh------------------------h------------------
Confidence 9999888655 46789999999999998653321100 0
Q ss_pred CCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhcc
Q 007742 452 VAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK 531 (591)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~ 531 (591)
-..=++|+|+|| +..+| ++.|..+|+.
T Consensus 256 -------------------------------------------ms~VKvLYVRNL--~~~tT--------eE~lk~~F~~ 282 (506)
T KOG0117|consen 256 -------------------------------------------MSKVKVLYVRNL--MESTT--------EETLKKLFNE 282 (506)
T ss_pred -------------------------------------------hhheeeeeeecc--chhhh--------HHHHHHHHHh
Confidence 001137999999 88888 8999999999
Q ss_pred ccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhhh
Q 007742 532 YGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 532 ~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 587 (591)
||.|..|+.+ +-+|||.|.+.++|.+|++.|||+.|+|..|.|.++++.+-.+
T Consensus 283 ~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 283 FGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred ccceEEeecc---cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999777 4499999999999999999999999999999999999876443
No 11
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.7e-35 Score=269.84 Aligned_cols=349 Identities=20% Similarity=0.376 Sum_probs=234.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
|+||||.|.+.+.|+.|+..|..||+|.+|.+-.|..|++.+|||||+|.-+|.|+.|+ .|||..++|+.|+|..+...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999 69999999999999744322
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHH
Q 007742 300 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379 (591)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a 379 (591)
....+...- ..........|||..+.+++.+++|+.+|+.||+|..|.+-..+..+..+||+|+||.+..+...|
T Consensus 194 pQAQpiID~-----vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 194 PQAQPIIDM-----VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred cccchHHHH-----HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 211100000 000001137899999999999999999999999999999999987778899999999999999999
Q ss_pred HHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCC--ccccCCcCCCCCccc
Q 007742 380 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGI--ATSIAGSLGVAPAVN 457 (591)
Q Consensus 380 ~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 457 (591)
+..||- +-++|+.|+|..+............. +.-........++...+...... ....-+..|.+..+.
T Consensus 269 iasMNl-FDLGGQyLRVGk~vTPP~aLl~Pat~-------s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vS 340 (544)
T KOG0124|consen 269 IASMNL-FDLGGQYLRVGKCVTPPDALLQPATV-------SAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVS 340 (544)
T ss_pred hhhcch-hhcccceEecccccCCCchhcCCCCc-------ccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccC
Confidence 999997 57999999998765322211111111 11111111111122222211111 111111122221111
Q ss_pred Cccccccccc-----------cCcC-CCCCCC--CCC------CCCC------ccc---------------ccccc----
Q 007742 458 GSAVNQQAIS-----------LPVV-GQPAVP--VPA------VTAP------VIP---------------NMAAE---- 492 (591)
Q Consensus 458 ~~~~~~~~~~-----------~~~~-~~~~~~--~~~------~~~~------~~~---------------~~~~~---- 492 (591)
.....++... ..++ +.++.. +|. ...| .+. .+..+
T Consensus 341 pA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~ 420 (544)
T KOG0124|consen 341 PAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLS 420 (544)
T ss_pred ccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhh
Confidence 1111100000 0000 000000 000 0000 000 00000
Q ss_pred --------------------ccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCC-------
Q 007742 493 --------------------FIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA------- 545 (591)
Q Consensus 493 --------------------~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~------- 545 (591)
+-...+++|.+.||++|.. +.+.|+.+|.++|++||.|..|.|-....
T Consensus 421 ~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~D-----iDe~LegEi~EECgKfG~V~rViI~nekq~e~edae 495 (544)
T KOG0124|consen 421 EQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKD-----IDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAE 495 (544)
T ss_pred hhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhh-----hhhHHHHHHHHHHhcccceeEEEEEecccccccchh
Confidence 0034678999999988764 45677899999999999999998843322
Q ss_pred --eeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhhh
Q 007742 546 --GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 546 --g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 587 (591)
-..||+|....++.+|+.+|+|++|+|++|....+.+..|..
T Consensus 496 iiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~ 539 (544)
T KOG0124|consen 496 IIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDN 539 (544)
T ss_pred hhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccc
Confidence 246999999999999999999999999999999998887753
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=265.30 Aligned_cols=178 Identities=34% Similarity=0.540 Sum_probs=155.7
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCc-cCC
Q 007742 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQL-LLG 288 (591)
Q Consensus 211 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~-i~g 288 (591)
....++....-++||+.||..++|.||+.+|++||.|..|.|++|+.||.++|||||.|.+.++|.+|+ .|+++. |.|
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 334445556788999999999999999999999999999999999999999999999999999999999 676655 666
Q ss_pred --eeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEE
Q 007742 289 --QPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFG 366 (591)
Q Consensus 289 --~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a 366 (591)
.+|.|.++....... +..+.|||+-|+..++|.+|.++|.+||.|+.|.|.++. .+.++|+|
T Consensus 105 ~~~pvqvk~Ad~E~er~---------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGca 168 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERI---------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCA 168 (510)
T ss_pred CCcceeecccchhhhcc---------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-ccccccee
Confidence 578888887655433 113789999999999999999999999999999999987 88999999
Q ss_pred EEEeCCHHHHHHHHHHhcCCeeeCCe--EEEEEEecCCCC
Q 007742 367 FVQFAQLEHAKAAQSALNGKLEIVGR--TLKVSSVTDHVG 404 (591)
Q Consensus 367 ~Vef~~~~~a~~a~~~l~g~~~~~g~--~l~v~~~~~~~~ 404 (591)
||.|.+.+.|..||+.|||...+.|+ +|.|.|+.....
T Consensus 169 FV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 169 FVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred EEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99999999999999999998788885 899999876543
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=268.93 Aligned_cols=338 Identities=20% Similarity=0.304 Sum_probs=226.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
+.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++|||||.|.-.++++.|+ ++++..+.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 389999999999999999999999999999999999999999999999999999999999 6899999999999987765
Q ss_pred ccccccccCCCCCC------C--C--CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEE
Q 007742 299 EKNLVQSNTSAGGT------A--T--GPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFV 368 (591)
Q Consensus 299 ~~~~~~~~~~~~~~------~--~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~V 368 (591)
.............. . . .-...+--.|+|+|||+.+...+|..+|+.||.|..|.|+... .|...|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEE
Confidence 44433111110000 0 0 0001113589999999999999999999999999999999766 5666699999
Q ss_pred EeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhh-hcCCccccC
Q 007742 369 QFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLD-RTGIATSIA 447 (591)
Q Consensus 369 ef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 447 (591)
+|....+|..||..+|+. +|+|++|.|.|+.+............+. +.... ....-.. .........
T Consensus 164 ~fk~~~dA~~Al~~~N~~-~i~gR~VAVDWAV~Kd~ye~ta~~~~~s---------~Kk~~--~eEed~e~~~d~~~~~~ 231 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGN-KIDGRPVAVDWAVDKDTYEDTAHEEKQS---------LKKAV--KEEEDKEADEDDGKDFD 231 (678)
T ss_pred EEeeHHHHHHHHHhccCc-eecCceeEEeeecccccccccchhhhhh---------hhhcc--chhhhcccccccccccc
Confidence 999999999999999996 7999999999998765433322100000 00000 0000000 000000000
Q ss_pred CcCCCCCcc-----cCccccc----cccccC-cCCCCCCCCCCCCCCcccc---ccccccCCCcceEEEeccCCCCCCCC
Q 007742 448 GSLGVAPAV-----NGSAVNQ----QAISLP-VVGQPAVPVPAVTAPVIPN---MAAEFIGSPSECLLLKNMFDPAMETD 514 (591)
Q Consensus 448 ~~~~~~~~~-----~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~l~v~Nl~~p~~~~~ 514 (591)
...+..... .++.-.. ...... ..-... .++. .+..+. -..........+|||.|| |+.++
T Consensus 232 ~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e--~S~~-~~~~k~~q~k~~~en~~~~~tVFvRNL--~fD~t- 305 (678)
T KOG0127|consen 232 EEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEE--SSGK-KESDKKAQNKTTRENITEGKTVFVRNL--PFDTT- 305 (678)
T ss_pred hhcccccccccccccccchhhhcccccccccccccccc--cccc-CcccchhccccccccccccceEEEecC--Ccccc-
Confidence 000000000 0000000 000000 000000 0000 000000 001112334578999999 99988
Q ss_pred chhhhhHHHHHHHHhccccceEEEEEe-----cCCCeeEEEEeCCHHHHHHHHHHh-----cc-cccCCeEEEEEEeCch
Q 007742 515 PDFDLEIQGDVEEECSKYGRVKHIYVD-----KRSAGFVYLRFESTEAAASAQRAM-----HM-RWFARRLISAIFMKPE 583 (591)
Q Consensus 515 ~~~~~~~~edl~~~f~~~G~V~~v~l~-----~~~~g~afV~F~~~e~A~~A~~~l-----~g-~~~~g~~l~v~~~~~~ 583 (591)
++.|.++|++||.|.++.|. ..+.|+|||.|.+..+|+.||... .| ..|+|+.|.|..+-..
T Consensus 306 -------EEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 306 -------EEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred -------HHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 89999999999999999773 357999999999999999999876 24 7799999999987543
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.8e-32 Score=286.94 Aligned_cols=290 Identities=22% Similarity=0.257 Sum_probs=208.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC--eeEEeccCc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG--QPVMVKPSE 297 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g--~~i~v~~~~ 297 (591)
.+|||+||++.+|+++|.++|..||.|..|.++.+.. .|+|||+|.+.++|.+|+ .|||..|.| ..|+|.++.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 5799999999999999999999999999999987643 479999999999999999 699999965 477776654
Q ss_pred cccccc-----cc----------------------cCCC---------------------C-----C--C----------
Q 007742 298 AEKNLV-----QS----------------------NTSA---------------------G-----G--T---------- 312 (591)
Q Consensus 298 ~~~~~~-----~~----------------------~~~~---------------------~-----~--~---------- 312 (591)
...... .. .... . . +
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence 322100 00 0000 0 0 0
Q ss_pred ------C--------CCCCCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 313 ------A--------TGPYGAIDRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 313 ------~--------~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
. .....+++.+|||+|||+ .+++++|.++|+.||.|..|.|+.++ +|+|||+|.+.++|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~ 327 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQ 327 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHH
Confidence 0 000123567999999998 69999999999999999999998763 689999999999999
Q ss_pred HHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCccc
Q 007742 378 AAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVN 457 (591)
Q Consensus 378 ~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (591)
.||..|||. .|.|++|.|.+++......... ...... .. . + ....... .
T Consensus 328 ~Ai~~lng~-~l~g~~l~v~~s~~~~~~~~~~---~~~~~~----~~--~---------~----------~d~~~~~-~- 376 (481)
T TIGR01649 328 LALTHLNGV-KLFGKPLRVCPSKQQNVQPPRE---GQLDDG----LT--S---------Y----------KDYSSSR-N- 376 (481)
T ss_pred HHHHHhCCC-EECCceEEEEEcccccccCCCC---CcCcCC----Cc--c---------c----------ccccCCc-c-
Confidence 999999996 7999999999875432111100 000000 00 0 0 0000000 0
Q ss_pred CccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccc--e
Q 007742 458 GSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGR--V 535 (591)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~--V 535 (591)
..+.. +. .... ....+++.+|+|.|| |..++ +++|+++|..||. |
T Consensus 377 -----------~r~~~-----~~------~~~~-~~~~~ps~~L~v~NL--p~~~t--------ee~L~~lF~~~G~~~i 423 (481)
T TIGR01649 377 -----------HRFKK-----PG------SANK-NNIQPPSATLHLSNI--PLSVS--------EEDLKELFAENGVHKV 423 (481)
T ss_pred -----------ccCCC-----cc------cccc-cccCCCCcEEEEecC--CCCCC--------HHHHHHHHHhcCCccc
Confidence 00000 00 0000 012457789999999 88888 8999999999998 8
Q ss_pred EEEEEecC---CCeeEEEEeCCHHHHHHHHHHhcccccCCeE------EEEEEeCch
Q 007742 536 KHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFARRL------ISAIFMKPE 583 (591)
Q Consensus 536 ~~v~l~~~---~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~------l~v~~~~~~ 583 (591)
..|.+... .+|+|||+|.+.++|..|+..|||..|.|+. |+|+|++..
T Consensus 424 ~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 424 KKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred eEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 88877433 3689999999999999999999999999984 999998753
No 15
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=280.66 Aligned_cols=301 Identities=27% Similarity=0.471 Sum_probs=237.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcC-----------C-CeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKA-----------G-KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ 284 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~-----------G-~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~ 284 (591)
+.++..+||+++|+.++++.+..+|..- | .+..+.+.. .+.||||+|.+.++|..|+.+++.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhcccch
Confidence 4567899999999999999999998763 2 266666644 456999999999999999999999
Q ss_pred ccCCeeEEeccCccccccccccCCC------CCC-CCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccC
Q 007742 285 LLLGQPVMVKPSEAEKNLVQSNTSA------GGT-ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI 357 (591)
Q Consensus 285 ~i~g~~i~v~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~ 357 (591)
.+.|.++++.-.............. +.. ......-....++|++||..+++.++.+++..||++....++.+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 9999999986444333222111111 000 111111124789999999999999999999999999999999999
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHh
Q 007742 358 ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKL 437 (591)
Q Consensus 358 ~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (591)
.+|.++||||.+|.++..+..|+..|||. .+.+.+|.|..+.......+....
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm-~lgd~~lvvq~A~~g~~~~~~~~~-------------------------- 378 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGM-QLGDKKLVVQRAIVGASNANVNFN-------------------------- 378 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchh-hhcCceeEeehhhccchhccccCC--------------------------
Confidence 88999999999999999999999999995 789999999876432111110000
Q ss_pred hhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchh
Q 007742 438 DRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDF 517 (591)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~ 517 (591)
......+.++.......++++.+|++.|+++|..+.+++.
T Consensus 379 ----------------------------------------~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~E 418 (500)
T KOG0120|consen 379 ----------------------------------------ISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEE 418 (500)
T ss_pred ----------------------------------------ccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHH
Confidence 0000111122222233578899999999999999999999
Q ss_pred hhhHHHHHHHHhccccceEEEEEecC--------CCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhhhcc
Q 007742 518 DLEIQGDVEEECSKYGRVKHIYVDKR--------SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 589 (591)
Q Consensus 518 ~~~~~edl~~~f~~~G~V~~v~l~~~--------~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~ 589 (591)
|++|.++|+..|.+||.|.+|.++.+ +.|++||+|.+.++++.|++.|+|++|+|++|.++|++++.|++..
T Consensus 419 yeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~~r~ 498 (500)
T KOG0120|consen 419 YEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYHARE 498 (500)
T ss_pred HHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhhccc
Confidence 99999999999999999999999765 5789999999999999999999999999999999999999999865
Q ss_pred C
Q 007742 590 K 590 (591)
Q Consensus 590 ~ 590 (591)
.
T Consensus 499 ~ 499 (500)
T KOG0120|consen 499 F 499 (500)
T ss_pred c
Confidence 3
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-32 Score=240.33 Aligned_cols=235 Identities=26% Similarity=0.425 Sum_probs=188.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~ 297 (591)
.+.++|||+||...+||+-|..+|+++|.+..++|+.+ .|+|.|+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 35699999999999999999999999999999998865 34455544
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
.+.+ ++. +.....-.|+|+.|.+.++-+.|++.|.+||+|..++|++|..|++++||+||.|.+.++|+
T Consensus 50 ~p~n--Qsk---------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAE 118 (321)
T KOG0148|consen 50 APGN--QSK---------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAE 118 (321)
T ss_pred Cccc--CCC---------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHH
Confidence 3311 111 11111368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCccc
Q 007742 378 AAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVN 457 (591)
Q Consensus 378 ~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (591)
+||+.|||+| |.++.|+..+++-+.... +...+.
T Consensus 119 nAI~~MnGqW-lG~R~IRTNWATRKp~e~------------n~~~lt--------------------------------- 152 (321)
T KOG0148|consen 119 NAIQQMNGQW-LGRRTIRTNWATRKPSEM------------NGKPLT--------------------------------- 152 (321)
T ss_pred HHHHHhCCee-eccceeeccccccCcccc------------CCCCcc---------------------------------
Confidence 9999999985 999999999986543100 000000
Q ss_pred CccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEE
Q 007742 458 GSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH 537 (591)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~ 537 (591)
+..+.+ ...+..++|+|+|| +..++ +++|++.|+.||.|..
T Consensus 153 ----------------------------fdeV~N-Qssp~NtsVY~G~I--~~~lt--------e~~mr~~Fs~fG~I~E 193 (321)
T KOG0148|consen 153 ----------------------------FDEVYN-QSSPDNTSVYVGNI--ASGLT--------EDLMRQTFSPFGPIQE 193 (321)
T ss_pred ----------------------------HHHHhc-cCCCCCceEEeCCc--Ccccc--------HHHHHHhcccCCcceE
Confidence 000000 02345678999999 55566 8999999999999999
Q ss_pred EEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 538 IYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 538 v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
|.+-+ .+|++||.|.+.|.|.+||..|||..++|+.|+|.|-++.
T Consensus 194 VRvFk-~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 194 VRVFK-DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred EEEec-ccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 98874 5999999999999999999999999999999999997664
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.4e-29 Score=224.09 Aligned_cols=178 Identities=26% Similarity=0.400 Sum_probs=159.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
.-.+||+.|...|+.++|++.|.+||.|.++++++|.+|++++|||||.|.+.++|+.|| .|||+.|+++.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 456899999999999999999999999999999999999999999999999999999999 7999999999999999988
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
++.........-.......++.+++||++||+..+++++|++.|++||+|.+|++.++ +||+||.|.+.|.|..
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 7744333333333444566777899999999999999999999999999999999987 6899999999999999
Q ss_pred HHHHhcCCeeeCCeEEEEEEecCCCC
Q 007742 379 AQSALNGKLEIVGRTLKVSSVTDHVG 404 (591)
Q Consensus 379 a~~~l~g~~~~~g~~l~v~~~~~~~~ 404 (591)
||..+||. .+.|..|++.+.+....
T Consensus 216 AIv~mNnt-ei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNNT-EIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcCc-eeCceEEEEeccccCCC
Confidence 99999997 89999999999876544
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=8.4e-29 Score=245.53 Aligned_cols=169 Identities=27% Similarity=0.412 Sum_probs=152.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+++|+++|+++|..||.|+.|+|+.+..++.++|||||+|.+.++|..|| .||+..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345689999999999999999999999999999999999999999999999999999999999 6999999999999998
Q ss_pred CccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
+.+.... ....+|||.|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++
T Consensus 184 a~p~~~~----------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 184 ARPGGES----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred ccccccc----------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 7543211 113689999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhcCCeeeCC--eEEEEEEecCC
Q 007742 376 AKAAQSALNGKLEIVG--RTLKVSSVTDH 402 (591)
Q Consensus 376 a~~a~~~l~g~~~~~g--~~l~v~~~~~~ 402 (591)
|..||+.||+. .|.| ++|.|.++...
T Consensus 248 A~~Ai~~lng~-~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 248 AQEAISALNNV-IPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHhCCC-ccCCCceeEEEEECCcc
Confidence 99999999996 4665 78999887654
No 19
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.1e-29 Score=247.06 Aligned_cols=322 Identities=22% Similarity=0.316 Sum_probs=219.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
..|||| +++|+..|.++|+.+|+|++|++++|. | +-|||||.|.++.+|.+|| ++|...+.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358899 899999999999999999999999998 6 9999999999999999999 79999999999999998654
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHH
Q 007742 300 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379 (591)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a 379 (591)
. ..|||.||++.++...|+++|+.||.|.+|.+..+. .| ++|| ||+|.+.++|.+|
T Consensus 76 ~---------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 76 P---------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKA 131 (369)
T ss_pred C---------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHH
Confidence 3 239999999999999999999999999999999886 44 8999 9999999999999
Q ss_pred HHHhcCCeeeCCeEEEEEEecCCCCCCccccc-CCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccC---CcCC---C
Q 007742 380 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAK-SADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIA---GSLG---V 452 (591)
Q Consensus 380 ~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~ 452 (591)
+..+||. .+.|++|.|............... ...+...-..... .......+...+...+...++. ...+ .
T Consensus 132 i~~~ng~-ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~-~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~ 209 (369)
T KOG0123|consen 132 IEKLNGM-LLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLE-EDSTDEELKDLFSAYGSITSVAVMRDSIGKSKG 209 (369)
T ss_pred HHHhcCc-ccCCCeeEEeeccchhhhcccccchhhhhhhhheeccc-cccchHHHHHhhcccCcceEEEEeecCCCCCCC
Confidence 9999997 599999999877655432221111 0000000000000 0000111111111111111110 0001 0
Q ss_pred CCcccCcccccccccc-----CcCCCCCC-CCCCCCC--------Ccc-ccccccccCCCcceEEEeccCCCCCCCCchh
Q 007742 453 APAVNGSAVNQQAISL-----PVVGQPAV-PVPAVTA--------PVI-PNMAAEFIGSPSECLLLKNMFDPAMETDPDF 517 (591)
Q Consensus 453 ~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~--------~~~-~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~ 517 (591)
..+++...+..+.... ..++.... ....... ... ..........+...|+|.|+ ...++
T Consensus 210 ~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknl--d~~~~---- 283 (369)
T KOG0123|consen 210 FGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNL--DETLS---- 283 (369)
T ss_pred ccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccC--ccccc----
Confidence 0111111110000000 01110000 0011100 000 01112223456678999998 55555
Q ss_pred hhhHHHHHHHHhccccceEEEEEe----cCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchh
Q 007742 518 DLEIQGDVEEECSKYGRVKHIYVD----KRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 584 (591)
Q Consensus 518 ~~~~~edl~~~f~~~G~V~~v~l~----~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 584 (591)
.+.|..+|+.||.|.++.|. ..++|++||+|.+.++|..|+..+||..+.|+.|.|.++...+
T Consensus 284 ----~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 284 ----DEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred ----hhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 78999999999999998874 3478999999999999999999999999999999998866444
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=8.4e-27 Score=250.27 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=147.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|||+|||+.+|+++|.++|..||.|..+.|+.+..+|.++|||||+|.+.++|..|| .|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3579999999999999999999999999999999999999999999999999999999999 699999999999998775
Q ss_pred cccccccccCCC------------CCCCCCCCCCCCceEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEec
Q 007742 298 AEKNLVQSNTSA------------GGTATGPYGAIDRKLYVGNLHFNM----------TETQLRKLFEPFGPVELVQLPL 355 (591)
Q Consensus 298 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~i~~v~i~~ 355 (591)
............ ..........++.+|+|.||.... ..++|.++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 432211100000 000111223456899999996421 2367999999999999999986
Q ss_pred cC---CCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 356 DI---ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 356 ~~---~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
+. .++.+.|+|||+|.++++|.+|+..|||. .|.|+.|.|.|...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr-~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR-KFNDRVVVAAFYGE 501 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEeCH
Confidence 53 23456799999999999999999999997 69999999999754
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=8.6e-27 Score=246.59 Aligned_cols=177 Identities=23% Similarity=0.377 Sum_probs=142.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
.++|||+|||+.+|+++|.++|..||.|..|.++.+..+|.++|||||+|.+.++|..|+ .|||..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999999999999999999999999999999 6999999999999988432
Q ss_pred ccccccc--------------------------------c------CCCCC-----------------------------
Q 007742 299 EKNLVQS--------------------------------N------TSAGG----------------------------- 311 (591)
Q Consensus 299 ~~~~~~~--------------------------------~------~~~~~----------------------------- 311 (591)
....... . .+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1100000 0 00000
Q ss_pred ----CCCCC---CCCCCceEEEcCCCCCCC----------HHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHH
Q 007742 312 ----TATGP---YGAIDRKLYVGNLHFNMT----------ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLE 374 (591)
Q Consensus 312 ----~~~~~---~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~ 374 (591)
..... ...++.+|+|.||....+ .++|+++|.+||.|..|.|.. ....|++||+|.+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHH
Confidence 00000 123468899999954433 368999999999999998863 345799999999999
Q ss_pred HHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 375 HAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 375 ~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
+|..|++.|||. .|+|+.|.|.+...
T Consensus 422 ~A~~A~~~lnGr-~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGR-YFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCc-ccCCeEEEEEEEcH
Confidence 999999999998 59999999999754
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2.8e-25 Score=227.16 Aligned_cols=183 Identities=30% Similarity=0.449 Sum_probs=150.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC--eeEEecc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG--QPVMVKP 295 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g--~~i~v~~ 295 (591)
..++|||+|||..+++++|..+|..||.|..+.++.+..+|.++|||||+|.+.++|..|+ .|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4578999999999999999999999999999999999888999999999999999999999 699999877 5677766
Q ss_pred Cccccccc----cc----------cC-C----------------------------------------------C---C-
Q 007742 296 SEAEKNLV----QS----------NT-S----------------------------------------------A---G- 310 (591)
Q Consensus 296 ~~~~~~~~----~~----------~~-~----------------------------------------------~---~- 310 (591)
+....... .. .. + . .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 54222000 00 00 0 0 0
Q ss_pred --CC---------CCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHH
Q 007742 311 --GT---------ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379 (591)
Q Consensus 311 --~~---------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a 379 (591)
.. ........+.+|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00 0000011234799999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhcCCeeeCCeEEEEEEecCC
Q 007742 380 QSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 380 ~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
|..|||. .|.|+.|.|.|.+..
T Consensus 328 i~~lnG~-~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGY-TLGNRVLQVSFKTNK 349 (352)
T ss_pred HHHhCCC-EECCeEEEEEEccCC
Confidence 9999996 799999999998654
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.7e-26 Score=221.97 Aligned_cols=182 Identities=25% Similarity=0.436 Sum_probs=148.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
-.+|+|+||||.+.+.+|..+|+.||.|..|.|.....++.+ |||||.|....+|..|| .+|+..|.|++|-|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 478999999999999999999999999999999987775555 99999999999999999 5999999999999988754
Q ss_pred cccccccc----------------------CCC-----------------CC--------------------CC-CC---
Q 007742 299 EKNLVQSN----------------------TSA-----------------GG--------------------TA-TG--- 315 (591)
Q Consensus 299 ~~~~~~~~----------------------~~~-----------------~~--------------------~~-~~--- 315 (591)
+....... ... .+ .. +.
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 33211000 000 00 00 00
Q ss_pred -----C------CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-
Q 007742 316 -----P------YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL- 383 (591)
Q Consensus 316 -----~------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l- 383 (591)
. ...-..+|||+|||+++|+++|.+.|++||+|..+.|+.++.|+.+.|.|||.|.+..+|.+||.+.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0 0001379999999999999999999999999999999999999999999999999999999999877
Q ss_pred ----cCCeeeCCeEEEEEEecCC
Q 007742 384 ----NGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 384 ----~g~~~~~g~~l~v~~~~~~ 402 (591)
.|.+.|.|+.|.|..+...
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccCCCceEEEeccEEeeeeccch
Confidence 2336799999999987543
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.93 E-value=4.7e-25 Score=218.84 Aligned_cols=166 Identities=23% Similarity=0.359 Sum_probs=144.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||.|||+.+++++|+++|..||+|..|.|+.+..++.++|||||+|.+.++|..||..|++. .|.+++|.|.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~-~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGI-TVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCC-ccCCceeeee
Confidence 344689999999999999999999999999999999999889999999999999999999999999996 6999999998
Q ss_pred EecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCC
Q 007742 398 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVP 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (591)
++.+..
T Consensus 183 ~a~p~~-------------------------------------------------------------------------- 188 (346)
T TIGR01659 183 YARPGG-------------------------------------------------------------------------- 188 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 763210
Q ss_pred CCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEe
Q 007742 478 VPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRF 552 (591)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F 552 (591)
.......|+|.|| |..++ +++|+++|++||.|..|.|..+ ++|+|||+|
T Consensus 189 ----------------~~~~~~~lfV~nL--p~~vt--------ee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F 242 (346)
T TIGR01659 189 ----------------ESIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRF 242 (346)
T ss_pred ----------------cccccceeEEeCC--CCccc--------HHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEE
Confidence 0011236999999 88888 8999999999999999987543 469999999
Q ss_pred CCHHHHHHHHHHhcccccCC--eEEEEEEeCchh
Q 007742 553 ESTEAAASAQRAMHMRWFAR--RLISAIFMKPED 584 (591)
Q Consensus 553 ~~~e~A~~A~~~l~g~~~~g--~~l~v~~~~~~~ 584 (591)
.+.++|.+||+.||+..|.| ++|.|.|+.+..
T Consensus 243 ~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 243 NKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999999999866 789999988753
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=6.4e-26 Score=223.35 Aligned_cols=176 Identities=23% Similarity=0.326 Sum_probs=136.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
+-..|||+||.+++|+++|+.+|+.||.|..|.++.|..||.++|||||+|.+.++|.+|+ .|||..|.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3344999999999999999999999999999999999999999999999999999999998 699999999999984211
Q ss_pred cccccccc--------------------------------cC----------------CC-----CC----------CCC
Q 007742 298 AEKNLVQS--------------------------------NT----------------SA-----GG----------TAT 314 (591)
Q Consensus 298 ~~~~~~~~--------------------------------~~----------------~~-----~~----------~~~ 314 (591)
........ .. .. .+ ...
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 11000000 00 00 00 000
Q ss_pred CCCCCCCceEEEcCCC--CCCC--------HHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 007742 315 GPYGAIDRKLYVGNLH--FNMT--------ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 384 (591)
Q Consensus 315 ~~~~~~~~~l~v~nl~--~~~~--------~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~ 384 (591)
+....++.|+.|.|+- ...| .++|.+.|.+||+|.+|.+-++ +.|++||.|.+++.|..|+.+||
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHh
Confidence 0011456788888883 2222 2678899999999999988543 35999999999999999999999
Q ss_pred CCeeeCCeEEEEEEec
Q 007742 385 GKLEIVGRTLKVSSVT 400 (591)
Q Consensus 385 g~~~~~g~~l~v~~~~ 400 (591)
|. +|.|+.|++.|..
T Consensus 512 gr-WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 512 GR-WFAGRMITAKYLP 526 (549)
T ss_pred hh-hhccceeEEEEee
Confidence 97 5999999999874
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=219.87 Aligned_cols=270 Identities=21% Similarity=0.324 Sum_probs=206.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.....|+|+|||..+..++|..+|..||.|..|.+... --.|+|+|..+.+|..|. .|....+...++.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 34478999999999999999999999999999855421 124999999999999999 68888888888888766
Q ss_pred cccccccc--ccC-----CCC----------------CCCCC-------C---CCCCC-ceEEEcCCCCCCCHHHHHHHh
Q 007742 297 EAEKNLVQ--SNT-----SAG----------------GTATG-------P---YGAID-RKLYVGNLHFNMTETQLRKLF 342 (591)
Q Consensus 297 ~~~~~~~~--~~~-----~~~----------------~~~~~-------~---~~~~~-~~l~v~nl~~~~~~~~l~~~f 342 (591)
........ ... ... ..... . ..... +.|||.||++.++.++|...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 54332200 000 000 00000 0 00011 339999999999999999999
Q ss_pred ccCCCeeEEEEeccCCC---CCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCC
Q 007742 343 EPFGPVELVQLPLDIET---GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDD 419 (591)
Q Consensus 343 ~~~g~i~~v~i~~~~~~---~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 419 (591)
.+.|.|..|.|...+.. -.+.|||||+|.++++|..|+..|+|. .++|+.|.|.++........
T Consensus 537 ~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt-vldGH~l~lk~S~~k~~~~~------------ 603 (725)
T KOG0110|consen 537 SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT-VLDGHKLELKISENKPASTV------------ 603 (725)
T ss_pred HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc-eecCceEEEEeccCcccccc------------
Confidence 99999999988866522 135699999999999999999999997 59999999998741000000
Q ss_pred CCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcc
Q 007742 420 GGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSE 499 (591)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 499 (591)
+ +..+ ......
T Consensus 604 -------------------------------g--------------------------------K~~~------~kk~~t 614 (725)
T KOG0110|consen 604 -------------------------------G--------------------------------KKKS------KKKKGT 614 (725)
T ss_pred -------------------------------c--------------------------------cccc------cccccc
Confidence 0 0000 012234
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
.|+|.|| |+.++ ..+|+.+|..||.|.+|.|+.. ..|||||+|-++.+|..|+.+|.++.|.|+.
T Consensus 615 KIlVRNi--pFeAt--------~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 615 KILVRNI--PFEAT--------KREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred eeeeecc--chHHH--------HHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 6999999 99887 8999999999999999999865 4789999999999999999999999999999
Q ss_pred EEEEEeCchhh
Q 007742 575 ISAIFMKPEDY 585 (591)
Q Consensus 575 l~v~~~~~~~~ 585 (591)
|.+.|+..+.-
T Consensus 685 LVLEwA~~d~~ 695 (725)
T KOG0110|consen 685 LVLEWAKSDNT 695 (725)
T ss_pred hheehhccchH
Confidence 99999988764
No 27
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=1.6e-23 Score=199.39 Aligned_cols=187 Identities=23% Similarity=0.379 Sum_probs=144.2
Q ss_pred cccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCc
Q 007742 208 EVVEPEADPERDQRTVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQL 285 (591)
Q Consensus 208 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~ 285 (591)
..-++...+....+.+||.|||+++.+++|+++|. +.|.|..|.|..|.. |+++|||.|+|.++|.+++|+ .||...
T Consensus 32 ~~gs~~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~ 110 (608)
T KOG4212|consen 32 GAGSQGGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYE 110 (608)
T ss_pred cccCCCCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhcc
Confidence 34444555555667899999999999999999996 579999999999965 899999999999999999999 599999
Q ss_pred cCCeeEEeccCcccccccc-------------------------------------------------ccCCCCC-----
Q 007742 286 LLGQPVMVKPSEAEKNLVQ-------------------------------------------------SNTSAGG----- 311 (591)
Q Consensus 286 i~g~~i~v~~~~~~~~~~~-------------------------------------------------~~~~~~~----- 311 (591)
+.|++|.|+-......... ..+....
T Consensus 111 ~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~ 190 (608)
T KOG4212|consen 111 VNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNN 190 (608)
T ss_pred ccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcccccccccc
Confidence 9999999953221110000 0000000
Q ss_pred ---------------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHH
Q 007742 312 ---------------TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376 (591)
Q Consensus 312 ---------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a 376 (591)
.......|....+||.||.+.+....|++.|.-.|.|..|.+-.++ .+.++|+|.++|..+-+|
T Consensus 191 ~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpvea 269 (608)
T KOG4212|consen 191 SSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEA 269 (608)
T ss_pred chhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHH
Confidence 0001233446789999999999999999999999999999998887 778999999999999999
Q ss_pred HHHHHHhcCCeeeCCeEEEEE
Q 007742 377 KAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 377 ~~a~~~l~g~~~~~g~~l~v~ 397 (591)
-+||..|++.. +..++..+.
T Consensus 270 vqaIsml~~~g-~~~~~~~~R 289 (608)
T KOG4212|consen 270 VQAISMLDRQG-LFDRRMTVR 289 (608)
T ss_pred HHHHHhhccCC-Cccccceee
Confidence 99999888642 444444443
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=9.5e-24 Score=219.86 Aligned_cols=172 Identities=20% Similarity=0.426 Sum_probs=143.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|..||..|||. .|.|+.|.|.+...
T Consensus 108 ~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~-~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 108 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGGRNIKVGRPSN 186 (612)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCe-EEecceeeeccccc
Confidence 78999999999999999999999999999999999889999999999999999999999999996 69999999974311
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
..... +. .
T Consensus 187 ~p~a~-----------------------------------------------~~---------------~---------- 194 (612)
T TIGR01645 187 MPQAQ-----------------------------------------------PI---------------I---------- 194 (612)
T ss_pred ccccc-----------------------------------------------cc---------------c----------
Confidence 00000 00 0
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCHH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 556 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~e 556 (591)
.... ........|||.|| +..++ +++|+++|+.||.|.++.|..+ .+|||||+|.+.+
T Consensus 195 -----~~~~--~~~~~~~rLfVgnL--p~~vt--------eedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 195 -----DMVQ--EEAKKFNRIYVASV--HPDLS--------ETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred -----cccc--ccccccceEEeecC--CCCCC--------HHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 0000 00112347999999 77777 8999999999999999988643 5899999999999
Q ss_pred HHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 557 AAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
+|.+|+..|||..|+|+.|.|.++...
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999999999999997653
No 29
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.90 E-value=9.7e-23 Score=192.82 Aligned_cols=317 Identities=20% Similarity=0.254 Sum_probs=204.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-Hc--CCccCCeeEEecc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LS--GQLLLGQPVMVKP 295 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~--g~~i~g~~i~v~~ 295 (591)
+++.|.++|||+.+||.+|..++.+||.|..+.+...++ .|||+|.+.+.|...+. .. -..+.|++|.|++
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 568999999999999999999999999999998886544 79999999999877552 22 2347888998876
Q ss_pred Ccccccccccc--------------------CCCCC-CCC-CCCCC--CCceEEEcCCCCCCCHHHHHHHhccCCCeeEE
Q 007742 296 SEAEKNLVQSN--------------------TSAGG-TAT-GPYGA--IDRKLYVGNLHFNMTETQLRKLFEPFGPVELV 351 (591)
Q Consensus 296 ~~~~~~~~~~~--------------------~~~~~-~~~-~~~~~--~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v 351 (591)
+........+. .+... ... +.... .--.++|.|+-+.++-+.|..+|++||.|..|
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 54322110000 00000 000 01011 12466789999999999999999999999888
Q ss_pred EEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC-eEEEEEEecCCCCCCc-ccccCCCCCCCCCCCccccHHH
Q 007742 352 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-RTLKVSSVTDHVGTQD-TAAKSADFDDDDGGGLALNAQS 429 (591)
Q Consensus 352 ~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g-~~l~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 429 (591)
..+... ..-.|+|+|.+++.|..|..+|+|+-.++| |.|+|.|++-..-... ...+..++.... ++.+ ..
T Consensus 181 iTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~---LP~g-d~ 252 (492)
T KOG1190|consen 181 ITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPD---LPVG-DG 252 (492)
T ss_pred EEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCC---CCCC-cc
Confidence 765432 223599999999999999999999855777 6889988764332111 111111111110 0000 00
Q ss_pred HHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCC--cceEEEeccC
Q 007742 430 RALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSP--SECLLLKNMF 507 (591)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~l~v~Nl~ 507 (591)
+..+.. .++.+.+..+.. .| .+..++.......- .......+ +.+|.|.||
T Consensus 253 ~p~l~~---------~~~aa~~~~~~~--------------~g-~p~aip~~~~~a~~--a~~~~~~~~~n~vllvsnl- 305 (492)
T KOG1190|consen 253 QPSLDQ---------LMAAAFGSVPAV--------------HG-APLAIPSGAAGANA--ADGKIESPSANVVLLVSNL- 305 (492)
T ss_pred ccccch---------hhhccccccccc--------------cC-CcccCCccchhhcc--cccccccCCCceEEEEecC-
Confidence 000000 000000000000 00 00000000000000 00111122 578999998
Q ss_pred CCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchh
Q 007742 508 DPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 584 (591)
Q Consensus 508 ~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 584 (591)
++..+| .+-|+.+|+.||.|..|+|..+.+..|+|+|.+...|+.|+.+|+|.+|.|+.|.|.|.+-..
T Consensus 306 n~~~VT--------~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 306 NEEAVT--------PDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred chhccc--------hhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 566666 789999999999999999987778899999999999999999999999999999999987554
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1.7e-23 Score=177.01 Aligned_cols=168 Identities=30% Similarity=0.506 Sum_probs=148.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~~ 296 (591)
.+..+|||+||+..++++.|.++|-+.|+|+++.+.+|+.+...+|||||+|.+.|+|..|+. ||...+-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999994 8888899999999876
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeccCCCCCcccEEEEEeCCHHH
Q 007742 297 EAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV-QLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v-~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
....... ..+..|||+||.+.+++..|+..|+.||.|... .+..+..+|.++|++||-|.+.+.
T Consensus 87 s~~~~nl---------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfea 151 (203)
T KOG0131|consen 87 SAHQKNL---------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEA 151 (203)
T ss_pred ccccccc---------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHH
Confidence 5211111 112689999999999999999999999987553 677777789999999999999999
Q ss_pred HHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 376 AKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 376 a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
+..|+.++||++ +..+++.|.++..
T Consensus 152 sd~ai~s~ngq~-l~nr~itv~ya~k 176 (203)
T KOG0131|consen 152 SDAAIGSMNGQY-LCNRPITVSYAFK 176 (203)
T ss_pred HHHHHHHhccch-hcCCceEEEEEEe
Confidence 999999999984 8999999998754
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=3.3e-22 Score=216.49 Aligned_cols=182 Identities=24% Similarity=0.403 Sum_probs=151.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccC----CeeEE
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLL----GQPVM 292 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~----g~~i~ 292 (591)
...++|||+|||..+|+++|+++|..||.|..+.++.+. +|.++|||||+|.+.++|..|+ .++|..|. |..|.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 345789999999999999999999999999999999885 5899999999999999999999 69999999 99999
Q ss_pred eccCccccccccccCCCC--CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEe
Q 007742 293 VKPSEAEKNLVQSNTSAG--GTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 370 (591)
Q Consensus 293 v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef 370 (591)
|.++.............. ............+|||+||+..+++++|+++|+.||.|..|.++.+ .++.++|||||+|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 987654332210000000 0000011223468999999999999999999999999999999988 4899999999999
Q ss_pred CCHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 371 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 371 ~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
.+.++|.+|+..|||. .|.|++|.|.++..+
T Consensus 334 ~~~~~A~~A~~~~~g~-~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 334 SNPEEANRAVTEMHGR-MLGGKPLYVALAQRK 364 (562)
T ss_pred CCHHHHHHHHHHhcCC-eeCCceeEEEeccCc
Confidence 9999999999999996 699999999998754
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.4e-22 Score=177.21 Aligned_cols=183 Identities=30% Similarity=0.461 Sum_probs=150.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC--eeEEec
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG--QPVMVK 294 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g--~~i~v~ 294 (591)
-....|||.+||..+|..+|.++|.+||.|+..+|..|..||.++|.|||.|...++|..|+ .|||+.-.| -+|.|.
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999 699998766 477776
Q ss_pred cCcccccccc---------cc------------------------------CCCC-CCC------C-CCCCCCCceEEEc
Q 007742 295 PSEAEKNLVQ---------SN------------------------------TSAG-GTA------T-GPYGAIDRKLYVG 327 (591)
Q Consensus 295 ~~~~~~~~~~---------~~------------------------------~~~~-~~~------~-~~~~~~~~~l~v~ 327 (591)
+++....... +. ++.. +.. . .......-+|||.
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 5443221000 00 0000 000 0 0111124799999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 328 NLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 328 nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
||.+++.+.-|+++|.+||.|..|.|++|..+++.+||+||.+.+-++|..||..|||. .+.++.|.|.+.+.
T Consensus 285 NLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy-~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 285 NLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY-RLGDRVLQVSFKTN 357 (360)
T ss_pred ecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc-cccceEEEEEEecC
Confidence 99999999999999999999999999999988999999999999999999999999995 79999999998653
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=6.7e-22 Score=206.04 Aligned_cols=164 Identities=30% Similarity=0.434 Sum_probs=134.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEee-cCCCCCccceEEEEecCcchHHHHH-HHc-C-CccCCeeEEe
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGK-VRDVRLIM-DRNSRRSKGVGYIEFYDVMSVPMAI-ALS-G-QLLLGQPVMV 293 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~~~~-d~~~g~~~G~afV~F~~~e~A~~Al-~l~-g-~~i~g~~i~v 293 (591)
..++|||+|||+.+|+++|.+.|.+++. ++.+.++. ....+.++|||||+|.+.++|..|+ .|+ + ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999864 44444433 3345678999999999999999999 554 3 3588999999
Q ss_pred ccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeccCCCCCcccEEEEEeC
Q 007742 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPF--GPVELVQLPLDIETGQCKGFGFVQFA 371 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~v~i~~~~~~~~~~g~a~Vef~ 371 (591)
.|+.+....... .....++|||+||+..+++++|+++|+.| |.|..|.++ ++||||+|.
T Consensus 217 dwA~p~~~~d~~-----------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~ 277 (578)
T TIGR01648 217 DWAEPEEEVDED-----------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFE 277 (578)
T ss_pred Eeeccccccccc-----------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeC
Confidence 998654322111 01123789999999999999999999999 999999775 459999999
Q ss_pred CHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 372 QLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 372 ~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
+.++|.+||+.||+. .|.|+.|.|.++++.
T Consensus 278 s~e~A~kAi~~lnG~-~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 278 DREDAVKAMDELNGK-ELEGSEIEVTLAKPV 307 (578)
T ss_pred CHHHHHHHHHHhCCC-EECCEEEEEEEccCC
Confidence 999999999999997 799999999998654
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=5.9e-20 Score=171.90 Aligned_cols=327 Identities=18% Similarity=0.160 Sum_probs=213.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH---HcCCccCCeeEEec
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA---LSGQLLLGQPVMVK 294 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~---l~g~~i~g~~i~v~ 294 (591)
..+-.|.|++|-..++|.+|.+.+..||+|..|.++.. +..|.|+|.+++.|..++. -+...+.|++..+.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 34578999999999999999999999999999988754 3479999999999999983 45566899999888
Q ss_pred cCccccccccccCCCCCCCCCCCCCCCceEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCC
Q 007742 295 PSEAEKNLVQSNTSAGGTATGPYGAIDRKLYV--GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372 (591)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~ 372 (591)
++..+........+ ..++..|++ -|--+.+|.+.|+.++.+.|+|..|.|++. ++ -.|+|||.+
T Consensus 103 yStsq~i~R~g~es---------~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFds 168 (494)
T KOG1456|consen 103 YSTSQCIERPGDES---------ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDS 168 (494)
T ss_pred cchhhhhccCCCCC---------CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeech
Confidence 88654432222111 111244444 344567999999999999999999988764 22 369999999
Q ss_pred HHHHHHHHHHhcCCeeeCC-eEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCC
Q 007742 373 LEHAKAAQSALNGKLEIVG-RTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLG 451 (591)
Q Consensus 373 ~~~a~~a~~~l~g~~~~~g-~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (591)
++.|+.|..+|||.-.+.| ++|+|.|+++..-....+.+.. |+..............+- +..... +..++
T Consensus 169 v~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~Dt-wDyTlp~~~~~~~~g~~~----~~r~~~----p~~~~ 239 (494)
T KOG1456|consen 169 VEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDT-WDYTLPDLRGPYDPGRNH----YDRQRQ----PAPLG 239 (494)
T ss_pred hHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCcc-ccccCCCCCCCCCCCCCC----CccccC----CCccC
Confidence 9999999999999855777 6999999987654444333222 322211100000000000 000000 00000
Q ss_pred CCCcccCccccccccccCcCCCCCCCCCCCCCCccc---cccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHH
Q 007742 452 VAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIP---NMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEE 528 (591)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~ 528 (591)
..+...+.. +.......+..++.+.|+...+..- ....+..+.+..++.|.+|.. .... .+.|+.+
T Consensus 240 ~~pss~~G~--h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh-~k~N--------~drlFNl 308 (494)
T KOG1456|consen 240 YHPSSRGGG--HSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDH-GKMN--------CDRLFNL 308 (494)
T ss_pred CChhhcCCC--CCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccc-cccc--------hhhhhhh
Confidence 000000000 0000000011111111111000000 011123466788999999933 2222 7899999
Q ss_pred hccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchh
Q 007742 529 CSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 584 (591)
Q Consensus 529 f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 584 (591)
|..||.|..|++++-..|-|+|++.+..+.+.|+..||+..+.|.+|.|.+.++..
T Consensus 309 ~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 309 FCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred hhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 99999999999998889999999999999999999999999999999999877653
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.4e-22 Score=188.69 Aligned_cols=165 Identities=25% Similarity=0.394 Sum_probs=140.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC--eEEEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSS 398 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g--~~l~v~~ 398 (591)
.-.+||+-||..|+|.+|+++|++||.|.+|.|++|+.++.++|+|||.|.+.++|..|+.+||+...|-| .+|.|.|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 36899999999999999999999999999999999999999999999999999999999999999766777 4677766
Q ss_pred ecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCC
Q 007742 399 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPV 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (591)
+......
T Consensus 114 Ad~E~er------------------------------------------------------------------------- 120 (510)
T KOG0144|consen 114 ADGERER------------------------------------------------------------------------- 120 (510)
T ss_pred cchhhhc-------------------------------------------------------------------------
Confidence 5311000
Q ss_pred CCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEec----CCCeeEEEEeCC
Q 007742 479 PAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK----RSAGFVYLRFES 554 (591)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~----~~~g~afV~F~~ 554 (591)
-.....|||+-| +..++ +.+|.++|++||.|+.|.|.+ .++|||||+|.+
T Consensus 121 ----------------~~~e~KLFvg~l--sK~~t--------e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 121 ----------------IVEERKLFVGML--SKQCT--------ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred ----------------cccchhhhhhhc--ccccc--------HHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 012346899988 66666 889999999999999998854 479999999999
Q ss_pred HHHHHHHHHHhcccc-cCCe--EEEEEEeCchh
Q 007742 555 TEAAASAQRAMHMRW-FARR--LISAIFMKPED 584 (591)
Q Consensus 555 ~e~A~~A~~~l~g~~-~~g~--~l~v~~~~~~~ 584 (591)
.+-|..||+.|||.. +.|+ +|.|.|++++.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 999999999999998 6665 59999998764
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=7e-21 Score=182.61 Aligned_cols=166 Identities=29% Similarity=0.435 Sum_probs=140.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCC-CCCccceEEEEecCcchHHHHH-H-HcCC-ccCCeeEEe
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGK-VRDVRLIMDRN-SRRSKGVGYIEFYDVMSVPMAI-A-LSGQ-LLLGQPVMV 293 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~~~~d~~-~g~~~G~afV~F~~~e~A~~Al-~-l~g~-~i~g~~i~v 293 (591)
.+++|||+|||.+.++++|.+.|++.++ |++|.|..... ..+.+|||||+|.+...|..|- . +++. .+.|+.+.|
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 4699999999999999999999999985 67777776442 4578999999999999998887 4 4544 489999999
Q ss_pred ccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCH
Q 007742 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 373 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~ 373 (591)
.|+.+......... ..-+.|||.||+..+|++.|+++|+.||.|..|..++| ||||.|.+-
T Consensus 243 dWAep~~e~ded~m-----------s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR 303 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTM-----------SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAER 303 (506)
T ss_pred eccCcccCCChhhh-----------hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecch
Confidence 99987554332211 11279999999999999999999999999999988754 899999999
Q ss_pred HHHHHHHHHhcCCeeeCCeEEEEEEecCCCC
Q 007742 374 EHAKAAQSALNGKLEIVGRTLKVSSVTDHVG 404 (591)
Q Consensus 374 ~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~ 404 (591)
++|.+||+.+||+ +|+|..|.|..+++...
T Consensus 304 ~davkAm~~~ngk-eldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 304 EDAVKAMKETNGK-ELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHHHHHHhcCc-eecCceEEEEecCChhh
Confidence 9999999999997 79999999999987654
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.84 E-value=1.5e-19 Score=168.15 Aligned_cols=210 Identities=25% Similarity=0.416 Sum_probs=157.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g 391 (591)
.+..|||.|||..+|.+++.++|++||.|.. |.|..+. .|..+|-|++.|...+++..|++.|++. .|.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~-~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDED-ELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcc-cccC
Confidence 3578999999999999999999999997754 6777776 5899999999999999999999999996 7999
Q ss_pred eEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcC
Q 007742 392 RTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVV 471 (591)
Q Consensus 392 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (591)
+.|+|..++-............ .+..........+.+++..-.
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~-------k~k~~~~kk~~k~q~k~~dw~------------------------------ 253 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKE-------KGKCKDKKKLKKQQQKLLDWR------------------------------ 253 (382)
T ss_pred cEEEEehhhhhhccCcCccccc-------ccccccHHHHHHHHHhhcccC------------------------------
Confidence 9999998865443332222111 001111111111111110000
Q ss_pred CCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCC-CchhhhhHHHHHHHHhccccceEEEEE-ecCCCeeEE
Q 007742 472 GQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMET-DPDFDLEIQGDVEEECSKYGRVKHIYV-DKRSAGFVY 549 (591)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~-~~~~~~~~~edl~~~f~~~G~V~~v~l-~~~~~g~af 549 (591)
|.-..+.-....++|+|+||++|..+. +++++.+|.++|.+.|.+||.|.+|.| ..++.|.+-
T Consensus 254 ---------------pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvt 318 (382)
T KOG1548|consen 254 ---------------PDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVT 318 (382)
T ss_pred ---------------CCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeE
Confidence 000011123445689999999998554 448889999999999999999999977 678999999
Q ss_pred EEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 550 LRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 550 V~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
|.|.+.++|..||+.|+|+.|+|+.|..+.....
T Consensus 319 V~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 319 VSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred EEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 9999999999999999999999999999875543
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=1.9e-20 Score=158.67 Aligned_cols=162 Identities=27% Similarity=0.433 Sum_probs=137.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
.+|||+||+..++++.|+++|-+.|+|..+.|+.+..++..+|||||||.+.++|.-|++.||. +.+-|++|+|..+..
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~-VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM-VKLYGRPIRVNKASA 88 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH-HHhcCceeEEEeccc
Confidence 7999999999999999999999999999999999999999999999999999999999999996 789999999987631
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
....
T Consensus 89 ~~~n---------------------------------------------------------------------------- 92 (203)
T KOG0131|consen 89 HQKN---------------------------------------------------------------------------- 92 (203)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEE-EE-----ecCCCeeEEEEeCCH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHI-YV-----DKRSAGFVYLRFEST 555 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v-~l-----~~~~~g~afV~F~~~ 555 (591)
..-+..|+|+|| +| ... +..|.+.|+.||.+... .+ .++++||+||.|.+.
T Consensus 93 -------------l~vganlfvgNL-d~-~vD--------e~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 93 -------------LDVGANLFVGNL-DP-EVD--------EKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred -------------cccccccccccc-Cc-chh--------HHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 001125999999 33 443 78899999999988763 22 235789999999999
Q ss_pred HHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 556 EAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
+.+.+|+..|||..++.++|.|+|+..+
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEec
Confidence 9999999999999999999999997543
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=170.89 Aligned_cols=148 Identities=29% Similarity=0.474 Sum_probs=134.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
-+|||+|||..+++.+|+.+|++||+|+.|.|+++ ||||...+...|..|+ .||+..|.|..|+|..+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999954 9999999999999999 59999999999999877654
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHH
Q 007742 300 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379 (591)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a 379 (591)
. ..+.+|+|+||.+.++.++|++.|++||+|..+.|++ +|+||.|.-.++|..|
T Consensus 75 s------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 S------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEA 128 (346)
T ss_pred C------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHH
Confidence 1 1237899999999999999999999999999999974 5899999999999999
Q ss_pred HHHhcCCeeeCCeEEEEEEecCCC
Q 007742 380 QSALNGKLEIVGRTLKVSSVTDHV 403 (591)
Q Consensus 380 ~~~l~g~~~~~g~~l~v~~~~~~~ 403 (591)
+..|+|+ +|.|+.++|...+...
T Consensus 129 ir~l~~~-~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 129 IRGLDNT-EFQGKRMHVQLSTSRL 151 (346)
T ss_pred Hhccccc-ccccceeeeeeecccc
Confidence 9999997 7999999999877554
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=2.8e-20 Score=188.68 Aligned_cols=174 Identities=30% Similarity=0.476 Sum_probs=146.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS---RRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
++|||.||++..|.++|..+|...|.|.++.|...+.. -.|.|||||+|.+.++|+.|+ .|+|+.|.|+.|.|..+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999988775532 136799999999999999999 68999999999999988
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHH
Q 007742 297 EAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376 (591)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a 376 (591)
...+.. ..+.........+.|+|.|||+.++..+|+.+|..||.|..|.|+.....+..+|||||+|.++.+|
T Consensus 596 ~~k~~~-------~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 596 ENKPAS-------TVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred cCcccc-------ccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 611110 0111112222257999999999999999999999999999999998755677799999999999999
Q ss_pred HHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 377 KAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 377 ~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
.+|+.+|.++ .|.|+.|.+.|++..
T Consensus 669 ~nA~~al~ST-HlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 669 KNAFDALGST-HLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHhhccc-ceechhhheehhccc
Confidence 9999999986 599999999998754
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.6e-19 Score=158.69 Aligned_cols=252 Identities=25% Similarity=0.401 Sum_probs=153.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC--eEEEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSS 398 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g--~~l~v~~ 398 (591)
.+.|||+-|...-.|++++.+|.+||.|.+|.+.... .|.++|+|||+|.+..+|..||..|||.-.+-| ..|.|.+
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4899999999999999999999999999999999886 889999999999999999999999999644555 5778888
Q ss_pred ecCCCCCC-----cccccCCCCCCCCCCCccc--cHHHHHHHHHHhh-----------------------------hcCC
Q 007742 399 VTDHVGTQ-----DTAAKSADFDDDDGGGLAL--NAQSRALLMQKLD-----------------------------RTGI 442 (591)
Q Consensus 399 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----------------------------~~~~ 442 (591)
+....... .....-.-+.. ..+.+ .....+.++++.. ..+.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~P---l~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNP---LALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCc---cccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 75432211 11111111111 11111 1111111111100 0000
Q ss_pred c-ccc-CCc-CCCCCcccCccccccccccCcCCCCC---------------------CC--CCCC---------------
Q 007742 443 A-TSI-AGS-LGVAPAVNGSAVNQQAISLPVVGQPA---------------------VP--VPAV--------------- 481 (591)
Q Consensus 443 ~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~--~~~~--------------- 481 (591)
. ..+ +.. ...++.+.............+.|..+ ++ .+.+
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 0 000 000 00000000000000000000011000 00 0000
Q ss_pred -CC-----C---ccc---cccc--cccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEE--e---c
Q 007742 482 -TA-----P---VIP---NMAA--EFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV--D---K 542 (591)
Q Consensus 482 -~~-----~---~~~---~~~~--~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l--~---~ 542 (591)
.. + .+| .... ...++..+.|||.+| |.+.. ..+|..+|-.||.|++.++ + .
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL--PQEFg--------DaEliQmF~PFGhivSaKVFvDRATN 324 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL--PQEFG--------DAELIQMFLPFGHIVSAKVFVDRATN 324 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC--chhhc--------cHHHHHHhccccceeeeeeeehhccc
Confidence 00 0 000 0000 114677899999999 77776 5789999999999998765 2 3
Q ss_pred CCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhh
Q 007742 543 RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYE 586 (591)
Q Consensus 543 ~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 586 (591)
.+++|+||.|.|+.+|+.||.+|||..|+=++|+|.+-.++.-+
T Consensus 325 QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 325 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred cccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 47999999999999999999999999999999999998877643
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=2.4e-19 Score=162.75 Aligned_cols=147 Identities=25% Similarity=0.415 Sum_probs=131.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
-.|||+|||..+++.+|+.+|++||+|..|.|+++ |+||...+...|..||..|||. .|+|..|.|.-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgY-tLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGY-TLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccc-eecceEEEEEeccc
Confidence 47999999999999999999999999999999854 8999999999999999999995 89999999986643
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
+
T Consensus 74 K------------------------------------------------------------------------------- 74 (346)
T KOG0109|consen 74 K------------------------------------------------------------------------------- 74 (346)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASA 561 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A 561 (591)
..++..|+|.|| ..+++ -++|+..|++||.|+.+.|. ++++||.|.-.++|..|
T Consensus 75 -------------sk~stkl~vgNi--s~tct--------n~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 -------------SKASTKLHVGNI--SPTCT--------NQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEA 128 (346)
T ss_pred -------------CCCccccccCCC--Ccccc--------CHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHH
Confidence 234557999999 55666 58899999999999999888 67999999999999999
Q ss_pred HHHhcccccCCeEEEEEEeCc
Q 007742 562 QRAMHMRWFARRLISAIFMKP 582 (591)
Q Consensus 562 ~~~l~g~~~~g~~l~v~~~~~ 582 (591)
+..|+|+.|.|++|+|++.+-
T Consensus 129 ir~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred Hhcccccccccceeeeeeecc
Confidence 999999999999999998654
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=2.1e-17 Score=161.30 Aligned_cols=170 Identities=24% Similarity=0.313 Sum_probs=132.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
....|-+.+|||.+|+++|.++|..++ |.++.+. ..+|+..|-|||+|.+.+++.+||+.+...+..+-|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 456788999999999999999999994 6665444 4568899999999999999999999999999999999977654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
............ ......-.|.|++||+.|++++|.++|+..-.+.. |.++.+. .+.+.|.|||+|.+.+.|+
T Consensus 86 ~e~d~~~~~~g~-----~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 86 AEADWVMRPGGP-----NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccccccccCCCC-----CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHH
Confidence 433221111110 11123468999999999999999999999876655 5565554 6779999999999999999
Q ss_pred HHHHHhcCCeeeCCeEEEEEEe
Q 007742 378 AAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 378 ~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+||+.... .|.-+-|.|-.+
T Consensus 160 ~Al~rhre--~iGhRYIEvF~S 179 (510)
T KOG4211|consen 160 IALGRHRE--NIGHRYIEVFRS 179 (510)
T ss_pred HHHHHHHH--hhccceEEeehh
Confidence 99965544 477788888654
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.79 E-value=3.7e-17 Score=155.25 Aligned_cols=283 Identities=20% Similarity=0.241 Sum_probs=195.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCe--eEEeccC-
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ--PVMVKPS- 296 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~--~i~v~~~- 296 (591)
-.++|.|+-+.+|-+-|.++|+.||.|..|..+..-+ .=.|+|+|.+.+.|+.|- .|+|+.|..- +|+|.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 4678999999999999999999999999887664322 235899999999999998 7999998653 4444322
Q ss_pred ---------ccccccccccCCC-C-----------------------------CC----CC-CCCCC--CCceEEEcCCC
Q 007742 297 ---------EAEKNLVQSNTSA-G-----------------------------GT----AT-GPYGA--IDRKLYVGNLH 330 (591)
Q Consensus 297 ---------~~~~~~~~~~~~~-~-----------------------------~~----~~-~~~~~--~~~~l~v~nl~ 330 (591)
+.+.........+ + +. .. +.... .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 1110000000000 0 00 00 00011 14678888885
Q ss_pred -CCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCccc
Q 007742 331 -FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTA 409 (591)
Q Consensus 331 -~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~ 409 (591)
..+|.+.|..+|.-||.|..|.|+.++. -.|+|+|.+...|..|+..|+|. .+.|++|+|.+++-..-.....
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~-~l~gk~lrvt~SKH~~vqlp~e 380 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGH-KLYGKKLRVTLSKHTNVQLPRE 380 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcc-eecCceEEEeeccCccccCCCC
Confidence 5689999999999999999999998763 46999999999999999999995 7999999999876432111000
Q ss_pred -ccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCCCCcc--
Q 007742 410 -AKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVI-- 486 (591)
Q Consensus 410 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 486 (591)
....++ ... ....+...+
T Consensus 381 gq~d~gl-------------------------------T~d----------------------------y~~spLhrfkk 401 (492)
T KOG1190|consen 381 GQEDQGL-------------------------------TKD----------------------------YGNSPLHRFKK 401 (492)
T ss_pred CCccccc-------------------------------ccc----------------------------CCCCchhhccC
Confidence 000000 000 000000001
Q ss_pred ccccccc-cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEE-EecCCCeeEEEEeCCHHHHHHHHHH
Q 007742 487 PNMAAEF-IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIY-VDKRSAGFVYLRFESTEAAASAQRA 564 (591)
Q Consensus 487 ~~~~~~~-~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~-l~~~~~g~afV~F~~~e~A~~A~~~ 564 (591)
|...+.. ..+|+.+|.+.|+ |...+ +++|+.+|...|.+.+.+ .-......|++++.++|+|..|+-.
T Consensus 402 pgsKN~~ni~PpsatlHlsni--p~svs--------ee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~ 471 (492)
T KOG1190|consen 402 PGSKNYQNIFPPSATLHLSNI--PPSVS--------EEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALID 471 (492)
T ss_pred cccccccccCCchhheeeccC--Ccccc--------hhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccc
Confidence 0011111 3467789999999 88777 899999999999876554 4445567999999999999999999
Q ss_pred hcccccCCe-EEEEEEeCc
Q 007742 565 MHMRWFARR-LISAIFMKP 582 (591)
Q Consensus 565 l~g~~~~g~-~l~v~~~~~ 582 (591)
|++..+++. .|+|+|.+-
T Consensus 472 ~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 472 LHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccccCCCCceEEEEeecc
Confidence 999999765 799999753
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.7e-18 Score=160.29 Aligned_cols=169 Identities=20% Similarity=0.461 Sum_probs=137.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
+.|||+.|.+.+.++.|+..|.+||+|++|.|.+++.+++.+|||||||.-++.|..|++.|||. .++|+.|+|.....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccCccccccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999997 59999999974310
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
.+....-...+....
T Consensus 193 ---------------------mpQAQpiID~vqeeA-------------------------------------------- 207 (544)
T KOG0124|consen 193 ---------------------MPQAQPIIDMVQEEA-------------------------------------------- 207 (544)
T ss_pred ---------------------CcccchHHHHHHHHH--------------------------------------------
Confidence 000000000010000
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCHH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 556 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~e 556 (591)
..-+.|+|..+ .|. ++ ++||+.+|.-||.|++|.|.+. .+||+||+|.+.+
T Consensus 208 --------------k~fnRiYVaSv-HpD-LS--------e~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 208 --------------KKFNRIYVASV-HPD-LS--------ETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred --------------HhhheEEeeec-CCC-cc--------HHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 01125888887 343 33 7899999999999999999543 4799999999999
Q ss_pred HHHHHHHHhcccccCCeEEEEEEe
Q 007742 557 AAASAQRAMHMRWFARRLISAIFM 580 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~g~~l~v~~~ 580 (591)
+...|+..||-.-++|+-|.|.-+
T Consensus 264 s~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred chHHHhhhcchhhcccceEecccc
Confidence 999999999999999999998653
No 46
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.1e-17 Score=167.11 Aligned_cols=151 Identities=24% Similarity=0.389 Sum_probs=133.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 323 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
.|||+ +.+|+..|+++|+++|+|.+|.+..+. + +-|||||.|.++++|..||..||.. .+.|++|+|.|...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~-~~~~~~~rim~s~r- 74 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFD-VLKGKPIRIMWSQR- 74 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCc-ccCCcEEEeehhcc-
Confidence 58888 899999999999999999999999997 6 9999999999999999999999997 59999999987631
Q ss_pred CCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCC
Q 007742 403 VGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVT 482 (591)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (591)
T Consensus 75 -------------------------------------------------------------------------------- 74 (369)
T KOG0123|consen 75 -------------------------------------------------------------------------------- 74 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC---CCeeEEEEeCCHHHHH
Q 007742 483 APVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTEAAA 559 (591)
Q Consensus 483 ~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~---~~g~afV~F~~~e~A~ 559 (591)
....|+|+|| +..++ ..+|.++|+.||.|++|++... ++|+ ||+|.+.++|.
T Consensus 75 --------------d~~~~~i~nl--~~~~~--------~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~ 129 (369)
T KOG0123|consen 75 --------------DPSLVFIKNL--DESID--------NKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAK 129 (369)
T ss_pred --------------CCceeeecCC--CcccC--------cHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHH
Confidence 0112999999 55555 5899999999999999998543 6788 99999999999
Q ss_pred HHHHHhcccccCCeEEEEEEeCchhhh
Q 007742 560 SAQRAMHMRWFARRLISAIFMKPEDYE 586 (591)
Q Consensus 560 ~A~~~l~g~~~~g~~l~v~~~~~~~~~ 586 (591)
+|+..|||..+.|+.|.|..+..+...
T Consensus 130 ~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 130 KAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999999999999999988776654
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.76 E-value=3.5e-18 Score=164.09 Aligned_cols=178 Identities=25% Similarity=0.398 Sum_probs=153.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
+.++|||++|+|.+|++.|+..|.+||.|.++.+++|+.+++++||+||+|.+++.+.++|..-.+.|.|+.|.+..+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 57999999999999999999999999999999999999999999999999999999999998888899999998876654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
.......... .....|+|++||..+++.++++.|++||.|..+.++.+..+...+||+||.|.+.+.+.+
T Consensus 85 r~~~~~~~~~----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 85 REDQTKVGRH----------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred cccccccccc----------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 3322221110 134799999999999999999999999999999999999899999999999999999998
Q ss_pred HHHHhcCCeeeCCeEEEEEEecCCCCCCcc
Q 007742 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDT 408 (591)
Q Consensus 379 a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~ 408 (591)
++ .+.- ..|.|++|.|..+.+.......
T Consensus 155 v~-~~~f-~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 155 VT-LQKF-HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ec-ccce-eeecCceeeEeeccchhhcccc
Confidence 87 3444 4699999999998877654443
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=1.1e-17 Score=149.81 Aligned_cols=179 Identities=29% Similarity=0.464 Sum_probs=141.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCc-cCCe--eEEec
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQL-LLGQ--PVMVK 294 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~-i~g~--~i~v~ 294 (591)
..++|||+.|...-.|+|++.+|..||.|.+|.+.+... |.++|||||.|.+.-+|.+|| .|+|.. +.|- .|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 468999999999999999999999999999999988765 899999999999999999999 688775 5553 44442
Q ss_pred cCcccccc------------------------------------------------------------------------
Q 007742 295 PSEAEKNL------------------------------------------------------------------------ 302 (591)
Q Consensus 295 ~~~~~~~~------------------------------------------------------------------------ 302 (591)
++...+..
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 21111100
Q ss_pred ----ccc--cCCCC--------------------------C---------------------------------------
Q 007742 303 ----VQS--NTSAG--------------------------G--------------------------------------- 311 (591)
Q Consensus 303 ----~~~--~~~~~--------------------------~--------------------------------------- 311 (591)
..+ ..++. +
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000 00000 0
Q ss_pred -------------------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCC
Q 007742 312 -------------------TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372 (591)
Q Consensus 312 -------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~ 372 (591)
......++..+.|||..||....+.+|.++|-+||.|.+.+++.|..|+.+++|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0000122335899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 373 LEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 373 ~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+.+|+.||++||| +.|+=+.|+|...
T Consensus 337 p~SaQaAIqAMNG-FQIGMKRLKVQLK 362 (371)
T KOG0146|consen 337 PASAQAAIQAMNG-FQIGMKRLKVQLK 362 (371)
T ss_pred chhHHHHHHHhcc-hhhhhhhhhhhhc
Confidence 9999999999999 5788888887654
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.73 E-value=1.7e-16 Score=140.78 Aligned_cols=206 Identities=22% Similarity=0.350 Sum_probs=145.2
Q ss_pred ceEEEcCCCCCCCHHHHHH----HhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRK----LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~----~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
.+|||.||+..+..++|+. +|+.||.|..|.... +...+|.|||.|.+++.|..|+.+|+| +.|-|++++|.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~g-fpFygK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQG-FPFYGKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcC-CcccCchhhee
Confidence 5999999999999988777 999999999988874 667899999999999999999999999 57999999999
Q ss_pred EecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCC
Q 007742 398 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVP 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (591)
|++...+....... .+........ .. .+.. .+.+...++..... .
T Consensus 86 yA~s~sdii~~~~~--~~v~~~~k~~---~~-------~~~~----------~~~~~~~ng~~~~~-------------~ 130 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPG--TFVEKEKKIN---GE-------ILAR----------IKQPLDTNGHFYNM-------------N 130 (221)
T ss_pred cccCccchhhccCc--eeccccCccc---cc-------cccc----------cCCccccccccccc-------------c
Confidence 99876554333211 0000000000 00 0000 00000000000000 0
Q ss_pred CCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHH
Q 007742 478 VPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEA 557 (591)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~ 557 (591)
.....+| . .....+|..+|++.|| |.+++ .+.|..+|..|.....|.+.....+.|||+|.+...
T Consensus 131 ~~~~p~p-~----~~~~~ppn~ilf~~ni--P~es~--------~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~ 195 (221)
T KOG4206|consen 131 RMNLPPP-F----LAQMAPPNNILFLTNI--PSESE--------SEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQ 195 (221)
T ss_pred cccCCCC-c----cccCCCCceEEEEecC--Ccchh--------HHHHHHHHhhCcccceeEeccCCCceeEEecchhhh
Confidence 0000000 0 1223577889999999 77776 788889999999888888877789999999999999
Q ss_pred HHHHHHHhcccccC-CeEEEEEEeC
Q 007742 558 AASAQRAMHMRWFA-RRLISAIFMK 581 (591)
Q Consensus 558 A~~A~~~l~g~~~~-g~~l~v~~~~ 581 (591)
|..|...|.|..+- .+.|.|.|+.
T Consensus 196 a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 196 ASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hHHHhhhhccceeccCceEEecccC
Confidence 99999999999986 8999998875
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=2.5e-16 Score=139.78 Aligned_cols=173 Identities=21% Similarity=0.390 Sum_probs=139.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHH----HHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEE
Q 007742 218 RDQRTVFAYQMPLKATERDVYE----FFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVM 292 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~----~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~ 292 (591)
.++.+|||.||+..+..++|+. +|++||.|++|.... |.+.+|.|||.|.+++.|..|+ .|+|..+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999988877 999999999998874 5678999999999999999999 7999999999999
Q ss_pred eccCccccccccccC--------------------CC--CCC--------C----CCCCCCCCceEEEcCCCCCCCHHHH
Q 007742 293 VKPSEAEKNLVQSNT--------------------SA--GGT--------A----TGPYGAIDRKLYVGNLHFNMTETQL 338 (591)
Q Consensus 293 v~~~~~~~~~~~~~~--------------------~~--~~~--------~----~~~~~~~~~~l~v~nl~~~~~~~~l 338 (591)
|+++..+........ +. .+. . .....+++..+++.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 988765443222100 00 000 0 0223566789999999999999999
Q ss_pred HHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC-CeEEEEEEe
Q 007742 339 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV-GRTLKVSSV 399 (591)
Q Consensus 339 ~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~-g~~l~v~~~ 399 (591)
..+|+.|.....|.++... .++|||+|.+...|..|.+.|+|. .|- ..++.|.++
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~-~it~~~~m~i~~a 219 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGF-KITKKNTMQITFA 219 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccc-eeccCceEEeccc
Confidence 9999999999999987654 679999999999999999999994 454 677777665
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=5.8e-17 Score=163.07 Aligned_cols=180 Identities=25% Similarity=0.336 Sum_probs=144.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
...++|++||..+++.++.+++..||.+....++.+..+|.++||||.+|.++..+..|+ .|||+.+++.+|.|+.+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 477999999999999999999999999999999999999999999999999999999999 6999999999999986654
Q ss_pred ccccccccCC-----CC---CCCCCCCCCCCceEEEcCCCC--CC-CH-------HHHHHHhccCCCeeEEEEeccCC--
Q 007742 299 EKNLVQSNTS-----AG---GTATGPYGAIDRKLYVGNLHF--NM-TE-------TQLRKLFEPFGPVELVQLPLDIE-- 358 (591)
Q Consensus 299 ~~~~~~~~~~-----~~---~~~~~~~~~~~~~l~v~nl~~--~~-~~-------~~l~~~f~~~g~i~~v~i~~~~~-- 358 (591)
.........+ .. .......+.++..|++.|+-. .+ .+ ++|+..|.+||.|..|.++.+-.
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~ 448 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDE 448 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCC
Confidence 4333222222 11 111244566678888888832 11 11 45667788999999999987721
Q ss_pred -CCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 359 -TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 359 -~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
...+.|-+||+|.+.++++.|+++|+|. .|.|+.|.+.|..
T Consensus 449 ~~~~G~GkVFVefas~ed~qrA~~~L~Gr-KF~nRtVvtsYyd 490 (500)
T KOG0120|consen 449 NPVPGTGKVFVEFADTEDSQRAMEELTGR-KFANRTVVASYYD 490 (500)
T ss_pred CcCCCcccEEEEecChHHHHHHHHHccCc-eeCCcEEEEEecC
Confidence 2345788999999999999999999997 7999999998864
No 52
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.69 E-value=6.8e-16 Score=145.36 Aligned_cols=296 Identities=20% Similarity=0.239 Sum_probs=197.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCccc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~~ 299 (591)
...|-.++|||..++.+|..+|...........+.....|..-|.|.|.|.+.+.-..|++.+.+.+.++.|.|-.+...
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 35566899999999999999998764443333343334578889999999999999999999999999999999766554
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccC----CCeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 300 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPF----GPVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~----g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
......................-.|.+++||+++++.++.++|.+. |..+.|.++... .|...|-|||.|...++
T Consensus 140 ~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~ 218 (508)
T KOG1365|consen 140 EFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEED 218 (508)
T ss_pred hheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHH
Confidence 4433332222222222222223578899999999999999999743 234445554443 78889999999999999
Q ss_pred HHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCc
Q 007742 376 AKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPA 455 (591)
Q Consensus 376 a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (591)
|..|+..-.+ .++.+-|.+-.++ .+...+.++..... .+....+.+.
T Consensus 219 aq~aL~khrq--~iGqRYIElFRST-----------------------------aaEvqqvlnr~~s~-pLi~~~~sp~- 265 (508)
T KOG1365|consen 219 AQFALRKHRQ--NIGQRYIELFRST-----------------------------AAEVQQVLNREVSE-PLIPGLTSPL- 265 (508)
T ss_pred HHHHHHHHHH--HHhHHHHHHHHHh-----------------------------HHHHHHHHHhhccc-cccCCCCCCC-
Confidence 9999965444 2455555443322 12333333332211 0000000000
Q ss_pred ccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccce
Q 007742 456 VNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRV 535 (591)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V 535 (591)
+++.+....| ......||.+.+| |++.+ .++|.++|..|-.-
T Consensus 266 ----------------------~p~~p~~~~p------~~~~kdcvRLRGL--Py~At--------vEdIL~FlgdFa~~ 307 (508)
T KOG1365|consen 266 ----------------------LPGGPARLVP------PTRSKDCVRLRGL--PYEAT--------VEDILDFLGDFATD 307 (508)
T ss_pred ----------------------CCCCccccCC------CCCCCCeeEecCC--Chhhh--------HHHHHHHHHHHhhh
Confidence 0000000000 1223679999999 99887 89999999988643
Q ss_pred EE---EEE----ecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhhh
Q 007742 536 KH---IYV----DKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 536 ~~---v~l----~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 587 (591)
+. |.+ .+.+.|.|||+|.+.|.|..|...-+.+...++-|.|--+.-+++++
T Consensus 308 i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 308 IRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred cccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 32 333 34568999999999999999999888888889989888777776663
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.4e-15 Score=129.10 Aligned_cols=171 Identities=21% Similarity=0.314 Sum_probs=132.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
...++|||+|||.+|.+.+|.++|-+||.|..|.|.... ...+||||+|.++-+|..|| ..+|..+.|..|.|..+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346899999999999999999999999999999886432 34689999999999999999 69999999999999887
Q ss_pred ccccccccccCC------CCCCC----CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEE
Q 007742 297 EAEKNLVQSNTS------AGGTA----TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFG 366 (591)
Q Consensus 297 ~~~~~~~~~~~~------~~~~~----~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a 366 (591)
............ .+++. .++..-....|+|.+||+....++|+..+.+.|.|-...+.++ |++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 654421111110 00111 1122222468999999999999999999999999977777654 479
Q ss_pred EEEeCCHHHHHHHHHHhcCC-eeeCCeEEEEEE
Q 007742 367 FVQFAQLEHAKAAQSALNGK-LEIVGRTLKVSS 398 (591)
Q Consensus 367 ~Vef~~~~~a~~a~~~l~g~-~~~~g~~l~v~~ 398 (591)
.|+|...++++-|+..|..+ +.-.|....|..
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 99999999999999999875 223455555544
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=2.4e-15 Score=130.44 Aligned_cols=94 Identities=23% Similarity=0.415 Sum_probs=82.8
Q ss_pred cccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCcc
Q 007742 208 EVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLL 286 (591)
Q Consensus 208 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i 286 (591)
.+.+.........++|||+|||+.+|+++|+++|.+||.|..|.++.+..++.++|||||+|.+.++|+.|| .||+..|
T Consensus 22 ~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 22 PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred ccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 333444444445689999999999999999999999999999999999999999999999999999999999 5999999
Q ss_pred CCeeEEeccCccccc
Q 007742 287 LGQPVMVKPSEAEKN 301 (591)
Q Consensus 287 ~g~~i~v~~~~~~~~ 301 (591)
.|+.|+|.++.....
T Consensus 102 ~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 102 NGRHIRVNPANDRPS 116 (144)
T ss_pred CCEEEEEEeCCcCCC
Confidence 999999998865443
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.63 E-value=1.7e-13 Score=129.07 Aligned_cols=296 Identities=19% Similarity=0.197 Sum_probs=194.7
Q ss_pred CCCCCCcEEEE--eCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC--e
Q 007742 215 DPERDQRTVFA--YQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG--Q 289 (591)
Q Consensus 215 ~~~~~~~~l~V--~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g--~ 289 (591)
+....++.|.+ -|--+.||-+-|..+....|+|..|-|++. + --.|.|||.+++.|++|- .|||..|-. -
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccce
Confidence 33445555554 444557899999999999999999988865 2 247999999999999999 699998743 4
Q ss_pred eEEeccCcccccccccc-----------------------------CCC-------CC----------------------
Q 007742 290 PVMVKPSEAEKNLVQSN-----------------------------TSA-------GG---------------------- 311 (591)
Q Consensus 290 ~i~v~~~~~~~~~~~~~-----------------------------~~~-------~~---------------------- 311 (591)
+|+|.++.+........ ... .+
T Consensus 190 TLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~ 269 (494)
T KOG1456|consen 190 TLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYR 269 (494)
T ss_pred eEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCc
Confidence 66665443322110000 000 00
Q ss_pred --------CCCCCCCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 007742 312 --------TATGPYGAIDRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382 (591)
Q Consensus 312 --------~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~ 382 (591)
-......+....++|.+|.. .++.+.|..+|..||.|..|.+++.+ .|.|+||+.+....+.|+..
T Consensus 270 ~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 270 DGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred cccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHH
Confidence 00012233467899999985 47889999999999999999998765 56799999999999999999
Q ss_pred hcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCcccc
Q 007742 383 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVN 462 (591)
Q Consensus 383 l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (591)
||+. .+.|.+|.|..++...-... ++..+.+ +.+.+-..
T Consensus 345 Lnn~-~lfG~kl~v~~SkQ~~v~~~---~pflLpD---------------------------------gSpSfKdy---- 383 (494)
T KOG1456|consen 345 LNNI-PLFGGKLNVCVSKQNFVSPV---QPFLLPD---------------------------------GSPSFKDY---- 383 (494)
T ss_pred hccC-ccccceEEEeeccccccccC---CceecCC---------------------------------CCcchhhc----
Confidence 9995 68999999987653221110 0000000 00000000
Q ss_pred ccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccce-EEEEE-
Q 007742 463 QQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRV-KHIYV- 540 (591)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V-~~v~l- 540 (591)
.+.. ...-....+...+...+|+++|...|. |..+| ++.|..+|...+.. .+|.|
T Consensus 384 --------s~Sk-----NnRFssp~qAsKNrIq~Ps~vLHffNa--P~~vt--------Ee~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 384 --------SGSK-----NNRFSSPEQASKNRIQPPSNVLHFFNA--PLGVT--------EEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred --------cccc-----ccccCChhHhhcccccCCcceeEEecC--CCccC--------HHHHHHHhhhcCCCcceEEee
Confidence 0000 000000011222335789999999999 99888 89999999876643 34443
Q ss_pred ecC--CCeeEEEEeCCHHHHHHHHHHhcccccCCe------EEEEEEeCchh
Q 007742 541 DKR--SAGFVYLRFESTEAAASAQRAMHMRWFARR------LISAIFMKPED 584 (591)
Q Consensus 541 ~~~--~~g~afV~F~~~e~A~~A~~~l~g~~~~g~------~l~v~~~~~~~ 584 (591)
+.. ....+.++|++.++|..||..||...+.+. +|++.|++.+-
T Consensus 441 p~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 441 PLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred cccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 211 233569999999999999999999998653 57777776554
No 56
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.61 E-value=4.2e-14 Score=132.20 Aligned_cols=178 Identities=22% Similarity=0.272 Sum_probs=136.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRD--------VRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG 288 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g 288 (591)
..+..|||.|||.++|-+++.++|.+||.|.. |+|..+.. |..+|=|.+.|...+++..|+ .|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34577999999999999999999999998853 78888876 999999999999999999999 599999999
Q ss_pred eeEEeccCcccccccc--------------------ccCC--CCCCCCCCCCCCCceEEEcCCCC----CCC-------H
Q 007742 289 QPVMVKPSEAEKNLVQ--------------------SNTS--AGGTATGPYGAIDRKLYVGNLHF----NMT-------E 335 (591)
Q Consensus 289 ~~i~v~~~~~~~~~~~--------------------~~~~--~~~~~~~~~~~~~~~l~v~nl~~----~~~-------~ 335 (591)
..|.|..+.-+..... .... .+.-....-....++|.|.||-. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999975432221100 0000 00000111122358999999932 122 3
Q ss_pred HHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 336 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 336 ~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|.+.+.+||.|..|.|. ..++.|.+.|.|.+.++|..||+.|+|++ |+|++|.......
T Consensus 291 edl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR~-fdgRql~A~i~DG 351 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGRW-FDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCee-ecceEEEEEEeCC
Confidence 6777889999999999886 34568899999999999999999999995 9999999986643
No 57
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=7.1e-14 Score=118.87 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=130.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
++.|||+|||.++-+.+|..+|.+||.|..|.|... ....+||||+|.++-+|..||..-+|. .++|+.|.|.++-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGY-dydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGY-DYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhccccc-ccCcceEEEEecc
Confidence 489999999999999999999999999999988543 224679999999999999999999995 7999999999874
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
-..........- ... ..+ |.. ..+
T Consensus 82 ggr~s~~~~G~y---~gg------------------------------grg--------------------Ggg---~gg 105 (241)
T KOG0105|consen 82 GGRSSSDRRGSY---SGG------------------------------GRG--------------------GGG---GGG 105 (241)
T ss_pred CCCccccccccc---CCC------------------------------CCC--------------------CCC---CCc
Confidence 322111100000 000 000 000 000
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAAS 560 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~ 560 (591)
.. . +..-.....|+|.+| |...+ |+||+++..+.|.|-...+.+++ .++|+|...|+...
T Consensus 106 ~r---g-----ppsrrSe~RVvVsGL--p~SgS--------WQDLKDHmReaGdvCfadv~rDg--~GvV~~~r~eDMkY 165 (241)
T KOG0105|consen 106 RR---G-----PPSRRSEYRVVVSGL--PPSGS--------WQDLKDHMREAGDVCFADVQRDG--VGVVEYLRKEDMKY 165 (241)
T ss_pred cc---C-----CcccccceeEEEecC--CCCCc--------hHHHHHHHHhhCCeeeeeeeccc--ceeeeeeehhhHHH
Confidence 00 0 001122346999999 88777 99999999999999888887655 66999999999999
Q ss_pred HHHHhccccc--CCeEEEEEEeCc
Q 007742 561 AQRAMHMRWF--ARRLISAIFMKP 582 (591)
Q Consensus 561 A~~~l~g~~~--~g~~l~v~~~~~ 582 (591)
|+.+|....+ .|-+..+.....
T Consensus 166 Avr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 166 AVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred HHHhhccccccCcCcEeeEEeccc
Confidence 9999988776 466665555443
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.57 E-value=9.1e-14 Score=121.88 Aligned_cols=231 Identities=19% Similarity=0.234 Sum_probs=130.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecc-CCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC---CeEEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD-IETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV---GRTLKVS 397 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~-~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~---g~~l~v~ 397 (591)
++|||.+||.++...+|+.+|..|-.-+...|... +.....+-+|||.|.+..+|..|+.+||| +.|+ +..|+|.
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG-vrFDpE~~stLhiE 113 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG-VRFDPETGSTLHIE 113 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC-eeeccccCceeEee
Confidence 89999999999999999999999876655555433 22223457999999999999999999999 5787 5789998
Q ss_pred EecCCCCCCcccccCCCCCCCCCCCccccH--HHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCC
Q 007742 398 SVTDHVGTQDTAAKSADFDDDDGGGLALNA--QSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPA 475 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (591)
.++............ ... ....+.. .+..+..............+..+...........++..... ....+.
T Consensus 114 lAKSNtK~kr~k~sg----tP~-~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~-~l~a~~ 187 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSG----TPG-SSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSE-ALSAPD 187 (284)
T ss_pred ehhcCcccccCCCCC----CCC-CCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchh-hhhhhh
Confidence 887554332211111 111 0111111 11001101111111111111111000000000000000000 000011
Q ss_pred CCCCCCCCCccccccccc-cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEe-cCCCeeEEEEeC
Q 007742 476 VPVPAVTAPVIPNMAAEF-IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFE 553 (591)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~-~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~-~~~~g~afV~F~ 553 (591)
...|..+. .+....... ......+|||-|| ...++ +++|+.+|+.|-....++|. +.+..+|||+|.
T Consensus 188 ~~~P~a~a-~l~ks~q~~~~~~acstlfianl--~~~~~--------ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~ 256 (284)
T KOG1457|consen 188 SKAPSANA-HLEKSSQGGSGARACSTLFIANL--GPNCT--------EDELKQLLSRYPGFHILKIRARGGMPVAFADFE 256 (284)
T ss_pred hcCCcccc-hhhhhhcccccchhhhhHhhhcc--CCCCC--------HHHHHHHHHhCCCceEEEEecCCCcceEeecHH
Confidence 11111111 111111111 1223346999999 66666 89999999999888777773 456778999999
Q ss_pred CHHHHHHHHHHhccccc
Q 007742 554 STEAAASAQRAMHMRWF 570 (591)
Q Consensus 554 ~~e~A~~A~~~l~g~~~ 570 (591)
+.+.|..|+..|+|..+
T Consensus 257 ~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 257 EIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHhhccee
Confidence 99999999999999876
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=5.6e-15 Score=132.94 Aligned_cols=160 Identities=30% Similarity=0.501 Sum_probs=130.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
..+||++||+.+.+.+|..+|..||.|..|.+. .|||||+|.+.-+|..|+ .+|+..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999999875 479999999999999999 79999999999888888754
Q ss_pred cccccccCCC----CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 300 KNLVQSNTSA----GGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 300 ~~~~~~~~~~----~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
.......... ......+.......+.|.+++..+..++|...|.++|.+....+ ..+++||+|...++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 3322111110 01112233444678899999999999999999999999854444 25689999999999
Q ss_pred HHHHHHHhcCCeeeCCeEEEEE
Q 007742 376 AKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 376 a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
|..|+..|++. .+.|+.|.+.
T Consensus 146 a~ra~~~l~~~-~~~~~~l~~~ 166 (216)
T KOG0106|consen 146 AKRALEKLDGK-KLNGRRISVE 166 (216)
T ss_pred hhhcchhccch-hhcCceeeec
Confidence 99999999996 7999999994
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.55 E-value=7.7e-14 Score=121.11 Aligned_cols=82 Identities=38% Similarity=0.692 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.+++|||.|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|..|+..|++. .|.|+.|.|.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~-~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK-ELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEeC
Confidence 3579999999999999999999999999999999999889999999999999999999999999996 699999999998
Q ss_pred cCC
Q 007742 400 TDH 402 (591)
Q Consensus 400 ~~~ 402 (591)
.+.
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 654
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=6.4e-13 Score=116.60 Aligned_cols=164 Identities=21% Similarity=0.346 Sum_probs=116.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEee-cCCCCCccceEEEEecCcchHHHHH-HHcCCccC---CeeEEe
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIM-DRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLL---GQPVMV 293 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~-d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~---g~~i~v 293 (591)
.-++|||.+||.++...+|..+|..|--.+.+.|.. ++.....+-+|||.|.+..+|.+|| .|||..|. +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 369999999999999999999999986555554443 2222235679999999999999999 79999874 677777
Q ss_pred ccCccccccccccCCC---C----------------------------------C-------------------------
Q 007742 294 KPSEAEKNLVQSNTSA---G----------------------------------G------------------------- 311 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~~---~----------------------------------~------------------------- 311 (591)
..+............. . +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 5332211100000000 0 0
Q ss_pred --------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 007742 312 --------TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383 (591)
Q Consensus 312 --------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l 383 (591)
.........+.+|||.||.+.+++++|+.+|+.|.....++|... . .-+.|||+|.+.+.|..||..|
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHh
Confidence 000011112579999999999999999999999976655555421 2 3457999999999999999999
Q ss_pred cCC
Q 007742 384 NGK 386 (591)
Q Consensus 384 ~g~ 386 (591)
+|.
T Consensus 269 qg~ 271 (284)
T KOG1457|consen 269 QGN 271 (284)
T ss_pred hcc
Confidence 985
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=1.9e-13 Score=104.08 Aligned_cols=69 Identities=26% Similarity=0.563 Sum_probs=65.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEE
Q 007742 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVM 292 (591)
Q Consensus 223 l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~ 292 (591)
|||+|||+.+|+++|.++|.+||.|..+.++.+ .++..+|||||+|.+.++|..|+. ++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 668899999999999999999995 999999999885
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=2.9e-13 Score=120.48 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=74.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
-.+||||||||.++.+.|+.+|++||.|++..++.|+.||+++|||||+|.+.+.|..|++-.+..|.|+...++.+.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 4789999999999999999999999999999999999999999999999999999999998888999999988876543
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.1e-13 Score=122.92 Aligned_cols=166 Identities=21% Similarity=0.378 Sum_probs=124.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
..|||++||+.+.+.+|..+|..||.|..|.|. .||+||+|.+..+|..|+..|++. .|.|..+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~-~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGK-ELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCc-eecceeeeeecccc
Confidence 468999999999999999999999999998884 568999999999999999999997 68888888877653
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
....+ . .+.++.. .. .......
T Consensus 73 ~~~~~--g----------------------------------~~~~g~r--------~~-~~~~~~~------------- 94 (216)
T KOG0106|consen 73 KRRGR--G----------------------------------RPRGGDR--------RS-DSRRYRP------------- 94 (216)
T ss_pred ccccc--C----------------------------------CCCCCCc--------cc-hhhccCC-------------
Confidence 22111 0 0000000 00 0000000
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASA 561 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A 561 (591)
.......|+|.|+ ...+. +.+|.++|+.+|.+....+ ..+++||+|.+.++|..|
T Consensus 95 ------------p~~s~~r~~~~~~--~~r~~--------~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 95 ------------PSRTHFRLIVRNL--SLRVS--------WQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred ------------cccccceeeeccc--hhhhh--------HHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhc
Confidence 0123346888888 54444 7999999999999965544 577899999999999999
Q ss_pred HHHhcccccCCeEEEEEE
Q 007742 562 QRAMHMRWFARRLISAIF 579 (591)
Q Consensus 562 ~~~l~g~~~~g~~l~v~~ 579 (591)
+..|+|..+.|+.|.+.+
T Consensus 150 ~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEK 167 (216)
T ss_pred chhccchhhcCceeeecc
Confidence 999999999999999943
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.44 E-value=3.9e-12 Score=122.26 Aligned_cols=228 Identities=19% Similarity=0.269 Sum_probs=141.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFE-PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.+.+||.|||+++..++|+.+|. +.|+|..|.++.+. .++++|+|.|||+++|.+++|++.||. +.+.|++|.|.-.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk-~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNK-YEVNGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhh-ccccCceEEEecc
Confidence 46799999999999999999996 57899999999996 899999999999999999999999998 5899999999865
Q ss_pred cCCCCCCccccc---CCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCC--------CC---cccCccccccc
Q 007742 400 TDHVGTQDTAAK---SADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGV--------AP---AVNGSAVNQQA 465 (591)
Q Consensus 400 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~ 465 (591)
.+..-.+....- ...+... ...+. -...+......... ...+. +. +..........
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~----~~~q~-----G~~~l~~~g~ggG~-~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGG----GGVQG-----GNGGLNGGGGGGGD-RDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred CchhhhhhhheeeccCcccccC----cceec-----ccccccccCCCCcc-ccCCCCcccccccccccCccccccccccc
Confidence 443221111100 0000000 00000 00000000000000 00000 00 00000000000
Q ss_pred cccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEE----e
Q 007742 466 ISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV----D 541 (591)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l----~ 541 (591)
..+..++-+ ..-+..+. .+.++....+||.|| -..+. ...|.+.|.-.|.|..|.+ .
T Consensus 192 ~~~~lfgl~--------~~Flr~~h-~f~pPl~~k~fvanl--~~~vg--------~~kL~qvfgmAGkv~~vdf~idKe 252 (608)
T KOG4212|consen 192 SNYNLFGLS--------ASFLRSLH-IFSPPLHNKVFVANL--DYKVG--------NKKLKQVFGMAGKVQSVDFSIDKE 252 (608)
T ss_pred hhhhcccch--------hhhhhhcc-CCCCCccceeeeecc--ccccc--------hHHHHHHhccceeeeeeceeeccc
Confidence 011111110 00011111 123455567999999 55544 5789999999999998865 3
Q ss_pred cCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEE
Q 007742 542 KRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIF 579 (591)
Q Consensus 542 ~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~ 579 (591)
..+.|+|.|+|.++-+|..||..|++.-+..++.++.+
T Consensus 253 G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 253 GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 45789999999999999999999998778888888776
No 66
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2e-14 Score=121.99 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
.+.-|||||||+.+||.||..+|++||.|++|.|++|+.||.++||||+.|.+.-+...|+ .|||..|.|+.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4678999999999999999999999999999999999999999999999999999999999 799999999999997553
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.42 E-value=8.2e-13 Score=127.26 Aligned_cols=170 Identities=23% Similarity=0.416 Sum_probs=140.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
...|+|++|++.++++.|++.|..||.|..|.+..+..++.++||+||+|.+++....+|..-.. .|.|+.|.+..+.
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h--~~dgr~ve~k~av 83 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH--KLDGRSVEPKRAV 83 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc--ccCCccccceecc
Confidence 37899999999999999999999999999999999999999999999999999999988855443 5899999888765
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
.........
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 422111000
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEe-----cCCCeeEEEEeCCH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-----KRSAGFVYLRFEST 555 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~-----~~~~g~afV~F~~~ 555 (591)
....+..|+|..| |..++ ++++++.|.+||.|..+.++ ...+||+||.|.+.
T Consensus 93 -------------~~~~tkkiFvGG~--~~~~~--------e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e 149 (311)
T KOG4205|consen 93 -------------RHLRTKKIFVGGL--PPDTT--------EEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE 149 (311)
T ss_pred -------------cccceeEEEecCc--CCCCc--------hHHHhhhhhccceeEeeEEeecccccccccceeeEeccc
Confidence 0114568999999 88877 89999999999988888664 24689999999999
Q ss_pred HHHHHHHHHhcccccCCeEEEEEEeCchhhhh
Q 007742 556 EAAASAQRAMHMRWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 587 (591)
+.+.+++. ..-+.|+|+.|.|--|.+++-..
T Consensus 150 ~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 150 DSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cccceecc-cceeeecCceeeEeeccchhhcc
Confidence 98888876 47778999999999988887554
No 68
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=9.1e-12 Score=117.89 Aligned_cols=176 Identities=21% Similarity=0.265 Sum_probs=128.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcC----CCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKA----GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~----G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
-.|-+++||+++|+.++..+|..- |-...|-++... .|+..|-|||.|...++|+.||..|.+.|+.+-|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456789999999999999999643 344566666554 378999999999999999999998888888887776433
Q ss_pred ccccc-----------cccc-cCCCCC---CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCC-eeE--EEEeccCC
Q 007742 297 EAEKN-----------LVQS-NTSAGG---TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGP-VEL--VQLPLDIE 358 (591)
Q Consensus 297 ~~~~~-----------~~~~-~~~~~~---~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~--v~i~~~~~ 358 (591)
..... .... ..+... ....+......+|.+++||+.++.++|..+|..|.. |.. |.|..+.
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~- 319 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG- 319 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-
Confidence 22111 0000 000000 011122223579999999999999999999998863 333 6666664
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 359 TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 359 ~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.|...|.|||+|.+.+.|..|++.+++++ ...+.|.|-.+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~-mk~RYiEvfp~ 359 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKL-MKSRYIEVFPC 359 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhh-cccceEEEeec
Confidence 78889999999999999999999999874 56888888655
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.7e-12 Score=120.19 Aligned_cols=77 Identities=35% Similarity=0.534 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCccc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~~ 299 (591)
.++|||+|||+.+|+++|+++|..||.|..|.|+.+.. .+|||||+|.+.++|..||.|||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998864 479999999999999999999999999999999987543
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8.2e-13 Score=105.58 Aligned_cols=80 Identities=28% Similarity=0.495 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
..+++|||+||.+.+||++|.++|+.+|.|..|.|-.|+.+...-|||||+|.+.++|..|| -++|+.+..++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35799999999999999999999999999999999999999889999999999999999999 59999999999999876
Q ss_pred c
Q 007742 297 E 297 (591)
Q Consensus 297 ~ 297 (591)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.39 E-value=1.3e-12 Score=99.37 Aligned_cols=69 Identities=32% Similarity=0.591 Sum_probs=62.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEE
Q 007742 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVM 292 (591)
Q Consensus 223 l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~ 292 (591)
|||+|||+.+++++|.++|..||.|..+.+..++. |.++|+|||+|.+.++|..|+. +++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999995 566889999874
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=4.5e-12 Score=125.73 Aligned_cols=138 Identities=32% Similarity=0.493 Sum_probs=111.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
.++|||+|||+.+|+++|.++|..||.|..|.+..++.+|.++|||||+|.+.++|..|+ .+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999999999999999999999999999999999999 6889999999999998643
Q ss_pred --cccccccc------CCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccC
Q 007742 299 --EKNLVQSN------TSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI 357 (591)
Q Consensus 299 --~~~~~~~~------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~ 357 (591)
........ .................+++.+++..++...+..+|..+|.+..+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 11111100 000111122233345889999999999999999999999999777665443
No 73
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=2.5e-12 Score=97.85 Aligned_cols=70 Identities=43% Similarity=0.778 Sum_probs=65.8
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEE
Q 007742 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395 (591)
Q Consensus 324 l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~ 395 (591)
|||+|||..+++++|+++|+.||.|..+.+..+ ..+..+|+|||+|.+.++|..|+..|+|. .+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~-~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGK-KINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCC-EECccCcC
Confidence 799999999999999999999999999999887 57889999999999999999999999995 79999885
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=8.8e-13 Score=105.40 Aligned_cols=78 Identities=28% Similarity=0.447 Sum_probs=74.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+.+|||+||+..++|++|+++|+.+|+|..|.|-.+..+..+.|||||+|.+.++|..||..++|. .++.++|.|.+.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt-rLddr~ir~D~D 113 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT-RLDDRPIRIDWD 113 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC-cccccceeeecc
Confidence 379999999999999999999999999999999999888899999999999999999999999996 799999999874
No 75
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.3e-12 Score=110.59 Aligned_cols=76 Identities=26% Similarity=0.402 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
.++|||+||+..+++.+|..+|..||+|.+|+|... ..|||||+|.++-+|..|+ .|+|..|.|..|.|..+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 589999999999999999999999999999999875 4689999999999999999 7999999999999988765
Q ss_pred cc
Q 007742 299 EK 300 (591)
Q Consensus 299 ~~ 300 (591)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.6e-12 Score=116.07 Aligned_cols=81 Identities=26% Similarity=0.287 Sum_probs=77.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
+..+|-|.||+.+++|.+|+++|.+||.|..|.|.+|+.||.++|||||.|.+-++|.+|| .|||.-+..--|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4588999999999999999999999999999999999999999999999999999999999 699999999999999987
Q ss_pred cc
Q 007742 298 AE 299 (591)
Q Consensus 298 ~~ 299 (591)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 77
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=9.2e-13 Score=106.15 Aligned_cols=82 Identities=29% Similarity=0.424 Sum_probs=77.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
...+..|||.++....||++|.+.|..||+|.+|-|..|..||..+|||+|+|.+.++|++|+ .+||..+.|++|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 445788999999999999999999999999999999999999999999999999999999999 7999999999999998
Q ss_pred Ccc
Q 007742 296 SEA 298 (591)
Q Consensus 296 ~~~ 298 (591)
+-.
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 743
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2.3e-12 Score=119.79 Aligned_cols=79 Identities=25% Similarity=0.472 Sum_probs=73.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|+|.|||+...+.||+.+|.+||.|.+|.||.+.. -|||||||+|.+.++|.+|- +|||..|.|+.|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 458999999999999999999999999999999999865 48999999999999999999 799999999999998876
Q ss_pred cc
Q 007742 298 AE 299 (591)
Q Consensus 298 ~~ 299 (591)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=5e-12 Score=115.00 Aligned_cols=77 Identities=30% Similarity=0.459 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
.+.+|||+||++.+|+++|+++|+.||.|.+|.|+.+. ...|||||+|.+.++|..|+.|+|..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45899999999999999999999999999999999884 456899999999999999999999999999999987654
No 80
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=9.6e-12 Score=94.53 Aligned_cols=70 Identities=50% Similarity=0.796 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEE
Q 007742 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395 (591)
Q Consensus 324 l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~ 395 (591)
|+|+|||+.+++++|.++|+.+|.|..+.+..++. +..+|+|||+|.+.++|..|++.+++. .|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~-~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGK-EIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCc-EECCEEcC
Confidence 79999999999999999999999999999999875 889999999999999999999998874 79999874
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=7.9e-12 Score=96.05 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.-.+-|||.|||+.+|.+++.++|.+||+|..|++-..+.| +|.|||.|.++.+|.+|+ .|+|..+.++.+.|.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 34588999999999999999999999999999999877765 999999999999999999 79999999999999766
Q ss_pred ccc
Q 007742 297 EAE 299 (591)
Q Consensus 297 ~~~ 299 (591)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 543
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.1e-12 Score=120.51 Aligned_cols=78 Identities=32% Similarity=0.628 Sum_probs=74.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
-+||||.-|++.++|..|+..|+.||+|+.|.|+.++.+|+++|||||+|...-++..|.+..+|. .|+|+.|.|.+-
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~-~Idgrri~VDvE 178 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI-KIDGRRILVDVE 178 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc-eecCcEEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999999995 799999999864
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.32 E-value=5.9e-11 Score=116.74 Aligned_cols=172 Identities=20% Similarity=0.261 Sum_probs=124.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
...|.+.+||+.+|+++|+++|+.++ |..+.+... +|...|-|||||.+.+++.+|+ .++-. .+..+-|.|-.+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~-~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRE-SMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHH-HhCCceEEEEccC
Confidence 36889999999999999999999996 555555443 6888999999999999999999 55553 5777888886553
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
......... ..+
T Consensus 85 ~~e~d~~~~------------------------------------------------------------~~g-------- 96 (510)
T KOG4211|consen 85 GAEADWVMR------------------------------------------------------------PGG-------- 96 (510)
T ss_pred Ccccccccc------------------------------------------------------------CCC--------
Confidence 211100000 000
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEE-EEEe----cCCCeeEEEEeCCH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH-IYVD----KRSAGFVYLRFEST 555 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~-v~l~----~~~~g~afV~F~~~ 555 (591)
+.......+|.|.+| |+.++ ++||.++|+.--.|.. +.++ ..+.|-|||+|++.
T Consensus 97 -----------~~s~~~d~vVRLRGL--Pfsct--------e~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sq 155 (510)
T KOG4211|consen 97 -----------PNSSANDGVVRLRGL--PFSCT--------EEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQ 155 (510)
T ss_pred -----------CCCCCCCceEEecCC--CccCc--------HHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCH
Confidence 000123347999999 99999 8999999997766655 2232 23688999999999
Q ss_pred HHHHHHHHHhcccccCCeEEEEEEeCchhhhh
Q 007742 556 EAAASAQRAMHMRWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 587 (591)
+.|++|+.. |...|+-+=|.|--+...++..
T Consensus 156 e~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 156 ESAEIALGR-HRENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HHHHHHHHH-HHHhhccceEEeehhHHHHHHh
Confidence 999999985 6666777778776665555544
No 84
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.32 E-value=3.8e-11 Score=121.92 Aligned_cols=349 Identities=15% Similarity=0.132 Sum_probs=190.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
-...|||.+||..+++.++.++|...-.|++...+....++...+.|||+|.+.+++..|+ ..+.+.++-+.|.|....
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 4578999999999999999999999988888544545556888999999999998888888 567777888888884322
Q ss_pred cccccc---------------------------------------ccc--------------CCC-C-------------
Q 007742 298 AEKNLV---------------------------------------QSN--------------TSA-G------------- 310 (591)
Q Consensus 298 ~~~~~~---------------------------------------~~~--------------~~~-~------------- 310 (591)
.+.... ... ... .
T Consensus 513 ~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~dN~~~ 592 (944)
T KOG4307|consen 513 DYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVPSKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRRDNRDR 592 (944)
T ss_pred hHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhhhhhhhccCcccccchHHHHhhhcCCccCccccccccccCCc
Confidence 111000 000 000 0
Q ss_pred --CCCCCC------CCCC--CceEEEcCCCCCCCHHHHHHHhccC-----------------------------------
Q 007742 311 --GTATGP------YGAI--DRKLYVGNLHFNMTETQLRKLFEPF----------------------------------- 345 (591)
Q Consensus 311 --~~~~~~------~~~~--~~~l~v~nl~~~~~~~~l~~~f~~~----------------------------------- 345 (591)
+..... ..+. -.++-|.|.|+.+..+.+++.|..-
T Consensus 593 ~~~~~~v~~~n~p~~r~~~~~~~~~vnn~pF~m~~~~~~~~~sekn~Pa~~~~~~~~gv~~~p~v~~~~~~~l~~~r~~~ 672 (944)
T KOG4307|consen 593 SRSRSPVRRRNSPRRREEHTRWCVQVNNVPFRMKDEELLEWFSEKNRPAKLTRTFYDGVASDPWVAEFSSESLMKRRSFG 672 (944)
T ss_pred ccccCccccCCCccccchhhhhhhcccCcceeecchhhhhhhcccCCcccccccccCCCCCCcccccccccccccccCCC
Confidence 000000 0000 1466788888888888888777630
Q ss_pred -CC--------eeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCC
Q 007742 346 -GP--------VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFD 416 (591)
Q Consensus 346 -g~--------i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 416 (591)
|. +..|.-++. ......|..|++|.+....+.|+...+.. ++.+..+.+..+.................
T Consensus 673 ~g~l~tg~~lr~~~i~~~~~-~~~~~~g~~~~e~~~~~~ee~a~~~~~~~-~an~~~~fn~p~~~~gs~~~~p~~p~p~~ 750 (944)
T KOG4307|consen 673 IGTLCTGRTLRLRYIDNAKA-DEILKIGDVYGEGKRQMNEEAALQHEVAE-KANPPSFFNAPAATRGSGPMPPLNPAPLP 750 (944)
T ss_pred ccccccCcccccchhhhhhh-ccccccccceeccCCccchhHHHHHHhhh-hccCCCcccccccccccCCCCCCCCCCCC
Confidence 00 001100011 12234678899999999999999888876 68888777766554433222211111000
Q ss_pred CCCCCCc--cc------cHHHHHHHHHH-hhhc-CCcccc-CCcCCCCCc------ccCcc--------ccccccccCcC
Q 007742 417 DDDGGGL--AL------NAQSRALLMQK-LDRT-GIATSI-AGSLGVAPA------VNGSA--------VNQQAISLPVV 471 (591)
Q Consensus 417 ~~~~~~~--~~------~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~------~~~~~--------~~~~~~~~~~~ 471 (591)
.....+. .. .........+. .... ...... ++.-++... ++... +........+.
T Consensus 751 ~gg~nG~~~p~pn~~NdGapg~g~~vp~~f~~gp~~~~gp~g~gggP~~~qngP~sl~~~p~~~f~sn~p~~~gf~pg~r 830 (944)
T KOG4307|consen 751 SGGQNGMNVPPPNGFNDGAPGRGGFVPRGFSQGPGMGRGPHGGGGGPNFYQNGPNSLNNGPQGQFRSNQPNDGGFRPGFR 830 (944)
T ss_pred CCccCCCCCCCCCCCCCCCCCcCCcCCccccCCCCCCCCCCCCCCCccccccCCcccCCCCccccCCCCCCcCCcCCccC
Confidence 0000000 00 00000000000 0000 000000 000000000 00000 00000000011
Q ss_pred CCCC------CCCCCC---CCCccccccccccCCCc-ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceE-EEEE
Q 007742 472 GQPA------VPVPAV---TAPVIPNMAAEFIGSPS-ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVK-HIYV 540 (591)
Q Consensus 472 ~~~~------~~~~~~---~~~~~~~~~~~~~~~~s-~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~-~v~l 540 (591)
+.++ -..++. ..+.-++........+. ++|.+.|+ |+.++ .+||.++|..|-.+- +|.+
T Consensus 831 ggpp~~g~gpg~~~g~~p~~~~~P~~~~~~~~~~pGp~V~~~~n~--Pf~v~--------l~dI~~FF~dY~~~p~sI~~ 900 (944)
T KOG4307|consen 831 GGPPGRGGGPGGFQGGSPGDDSQPSQELMELIKSPGPRVLSCNNF--PFDVT--------LEDIVEFFNDYEPDPNSIRI 900 (944)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHhcCCCCCeEEEecCC--Ccccc--------HHHHHHHhcccccCCCceeE
Confidence 1111 111111 11112222222334444 48999999 99988 899999999997664 3333
Q ss_pred ----ecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEE
Q 007742 541 ----DKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIF 579 (591)
Q Consensus 541 ----~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~ 579 (591)
....+|.|.|-|++.++|..|...|+++.|..++|.|.+
T Consensus 901 r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 901 RRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 234689999999999999999999999999999998865
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=114.14 Aligned_cols=81 Identities=33% Similarity=0.596 Sum_probs=74.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.+.|+|.|||+..-+.||..+|.+||+|.+|.|+.+ ...++||+||+|.+.++|.+|-..|||. .+.|++|.|..++
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt-~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGT-VVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcc-eeeceEEEEeccc
Confidence 489999999999999999999999999999999987 3457999999999999999999999998 4999999999988
Q ss_pred CCCC
Q 007742 401 DHVG 404 (591)
Q Consensus 401 ~~~~ 404 (591)
...-
T Consensus 173 arV~ 176 (376)
T KOG0125|consen 173 ARVH 176 (376)
T ss_pred hhhc
Confidence 7743
No 86
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=6.4e-12 Score=106.53 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=69.6
Q ss_pred cceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEE
Q 007742 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISA 577 (591)
Q Consensus 498 s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v 577 (591)
.+.|+|.|| +..++ ..+|..+|..||.|.+|.|...+.|||||+|+++-+|..|+..|+|+.|.|..|.|
T Consensus 10 ~~kVYVGnL--~~~a~--------k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNL--GSRAT--------KRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CceEEeccC--CCCcc--------hHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 457999999 66666 78999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCc
Q 007742 578 IFMKP 582 (591)
Q Consensus 578 ~~~~~ 582 (591)
++.+-
T Consensus 80 E~S~G 84 (195)
T KOG0107|consen 80 ELSTG 84 (195)
T ss_pred EeecC
Confidence 98764
No 87
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.5e-11 Score=88.68 Aligned_cols=56 Identities=30% Similarity=0.477 Sum_probs=51.6
Q ss_pred HHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEe
Q 007742 525 VEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFM 580 (591)
Q Consensus 525 l~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~ 580 (591)
|.++|++||.|..+.+.....++|||+|.+.++|..|+..|||..|+|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997666799999999999999999999999999999999985
No 88
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.4e-13 Score=112.94 Aligned_cols=80 Identities=31% Similarity=0.613 Sum_probs=76.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
.-|||+|||+.+|+.+|..+|++||.|+.|.+++++.||.++||||+.|.+.-+...|+..||| +.|.|+.|+|..+-.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG-iki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG-IKILGRTIRVDHVSN 114 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC-ceecceeEEeeeccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 689999999988754
Q ss_pred C
Q 007742 402 H 402 (591)
Q Consensus 402 ~ 402 (591)
+
T Consensus 115 Y 115 (219)
T KOG0126|consen 115 Y 115 (219)
T ss_pred c
Confidence 4
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=9.3e-12 Score=114.40 Aligned_cols=79 Identities=23% Similarity=0.417 Sum_probs=74.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.+-+||||+-|+++++|..|+..|..||+|..|.|+.++.||+++|||||+|.+.-+..+|. ..+|.+|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 35699999999999999999999999999999999999999999999999999999999999 69999999999999654
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=107.70 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=77.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
-..|.|-||.+-+|.++|..+|++||.|.+|.|..|..|+.++|||||.|....+|+.|| .|+|.+|.|+.|.|+.+..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 378999999999999999999999999999999999999999999999999999999999 6999999999999998876
Q ss_pred ccc
Q 007742 299 EKN 301 (591)
Q Consensus 299 ~~~ 301 (591)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 655
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=1.6e-11 Score=119.83 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCc--chHHHHH-HHcCCccCCeeEEec
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV--MSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~--e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
....+||||||++.+|+++|..+|..||.|..|.|+ +.+| +|||||+|... .++.+|| .|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345899999999999999999999999999999999 4566 99999999987 6789999 699999999999997
Q ss_pred cCcc
Q 007742 295 PSEA 298 (591)
Q Consensus 295 ~~~~ 298 (591)
.+.+
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 5543
No 92
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.8e-11 Score=109.53 Aligned_cols=81 Identities=38% Similarity=0.545 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
..+|.|.||+.++++.+|.++|.+||.|..|.|.+++.||.++|||||.|.+-++|.+||..|||. -++.-.|.|.+++
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~-gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY-GYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc-ccceEEEEEEecC
Confidence 468999999999999999999999999999999999999999999999999999999999999995 6888999999987
Q ss_pred CC
Q 007742 401 DH 402 (591)
Q Consensus 401 ~~ 402 (591)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.26 E-value=1.2e-11 Score=107.47 Aligned_cols=80 Identities=35% Similarity=0.552 Sum_probs=75.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
..|.|-||.+.++.++|..+|++||.|-.|.|+.+..|..++|||||.|....+|+.||.+|+|. .++|+.|.|..+..
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~-~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA-VLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce-eeccceeeehhhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999997 59999999987764
Q ss_pred C
Q 007742 402 H 402 (591)
Q Consensus 402 ~ 402 (591)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=7.2e-11 Score=90.85 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=71.8
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEE--ecCCCeeEEEEeCCHHHHHHHHHHhcccccCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV--DKRSAGFVYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l--~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
+.-+++|+|+|| |+..| .+++.++|.+||.|..|.| ....+|-|||.|+++.+|.+|+.+|+|..+.+
T Consensus 15 pevnriLyirNL--p~~IT--------seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 15 PEVNRILYIRNL--PFKIT--------SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred hhhheeEEEecC--Ccccc--------HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 445678999999 99888 8999999999999999988 45678999999999999999999999999999
Q ss_pred eEEEEEEeCchh
Q 007742 573 RLISAIFMKPED 584 (591)
Q Consensus 573 ~~l~v~~~~~~~ 584 (591)
+-|.|-|..+..
T Consensus 85 ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 85 RYLVVLYYQPED 96 (124)
T ss_pred ceEEEEecCHHH
Confidence 999999876543
No 95
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=1e-10 Score=108.54 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=70.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..|| .|+|. .|.|+.|.|..+.+
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~-~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGA-TIVDQSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCC-eeCCceEEEEeccC
Confidence 7999999999999999999999999999999987652 4789999999999999999 69997 69999999999875
Q ss_pred CC
Q 007742 402 HV 403 (591)
Q Consensus 402 ~~ 403 (591)
+.
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 54
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-11 Score=108.58 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=78.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
+-++|||++|...+||.-|...|-+||.|.+|.+..|-.+++.+|||||+|.-.|+|.+|| .||+..+.|+.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4589999999999999999999999999999999999999999999999999999999999 699999999999999887
Q ss_pred cccc
Q 007742 298 AEKN 301 (591)
Q Consensus 298 ~~~~ 301 (591)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 6543
No 97
>smart00362 RRM_2 RNA recognition motif.
Probab=99.20 E-value=8.5e-11 Score=89.54 Aligned_cols=71 Identities=38% Similarity=0.595 Sum_probs=65.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 222 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
+|||+|||..++.++|.++|..||.|..+.+..+. +.++|+|||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 678899999999999999999 588899999998763
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=2.8e-11 Score=97.69 Aligned_cols=79 Identities=32% Similarity=0.566 Sum_probs=75.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.-.|||.++...+++++|.+.|..||+|+.|.+..+..+|-.+|||+|+|.+.++|+.|+..|||. .+.|++|.|.||-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~-~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA-ELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch-hhhCCceeEEEEE
Confidence 368999999999999999999999999999999999999999999999999999999999999995 7999999999874
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=3.7e-10 Score=113.05 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=110.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
.....+|+|-|||..+++++|..+|..||.|..|+... ...|..||+|.++-+|+.|+ +|++..|.|+.|+...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 34569999999999999999999999999999976643 45789999999999999999 7999999999998432
Q ss_pred CccccccccccCCC------CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEE
Q 007742 296 SEAEKNLVQSNTSA------GGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQ 369 (591)
Q Consensus 296 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Ve 369 (591)
........+..... ......+.+..-..++ +.|++.....-+..++.-+|.+.. .. ++.-.-..|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhh
Confidence 22222211111110 0011112222112333 338887777555566666776654 22 22222367889
Q ss_pred eCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 370 FAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 370 f~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
|.+..++..++... | +.+.+....+.+.
T Consensus 220 ~~~~~s~a~~~~~~-G-~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 220 FADNRSYAFSEPRG-G-FLISNSSGVITFS 247 (549)
T ss_pred hccccchhhcccCC-c-eecCCCCceEEec
Confidence 99888885555322 4 3466666555554
No 100
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=4.6e-11 Score=123.12 Aligned_cols=74 Identities=20% Similarity=0.358 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
-++|||||+|+..+++.||..+|+.||.|.+|.++. .+|||||.+.+-.+|.+|| .|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 469999999999999999999999999999999974 5889999999999999999 799999999999999985
Q ss_pred c
Q 007742 298 A 298 (591)
Q Consensus 298 ~ 298 (591)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=88.60 Aligned_cols=70 Identities=39% Similarity=0.643 Sum_probs=65.1
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 225 AYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 225 V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
|+|||..+++++|..+|..||.|..+.+..+..++.++|||||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999999998888899999999999999999999 588899999988773
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=2.3e-10 Score=104.34 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
.+|+|+||++.+|+++|+++|+.||.|..|.|+.+. ...|+|||+|.+.++|..|+ .|+|. .|.++.|.|..+.+
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa-~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGA-TIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCC-eeCCceEEEEeCcc
Confidence 799999999999999999999999999999999874 34689999999999999999 89997 69999999998776
Q ss_pred CCC
Q 007742 402 HVG 404 (591)
Q Consensus 402 ~~~ 404 (591)
+..
T Consensus 81 y~~ 83 (243)
T PLN03121 81 YED 83 (243)
T ss_pred ccc
Confidence 543
No 103
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=7.1e-11 Score=105.44 Aligned_cols=77 Identities=34% Similarity=0.518 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
-+.|||++|++.+..+.|+..|+.||.|++..|+.|+.++.++||+||+|.+.+.|..|++.-+- .|+|++..+..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p--iIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP--IIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC--cccccccccchh
Confidence 37999999999999999999999999999999999999999999999999999999999977666 499998877654
No 104
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=5.1e-10 Score=85.15 Aligned_cols=71 Identities=49% Similarity=0.861 Sum_probs=65.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 323 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
+|+|.|||..++.++|.++|..||.|..+.+..+. +.+.|+|||+|.+.++|..|+..+++. .+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~-~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGT-KLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCc-EECCEEEee
Confidence 48999999999999999999999999999988765 667899999999999999999999985 699999876
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.12 E-value=1.2e-10 Score=117.41 Aligned_cols=81 Identities=32% Similarity=0.541 Sum_probs=77.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
+.|||||||+.+++++|..+|...|.|.+++++.|+.||..+||||++|.+.++|..|+ .|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999 69999999999999887654
Q ss_pred cc
Q 007742 300 KN 301 (591)
Q Consensus 300 ~~ 301 (591)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.10 E-value=3.2e-09 Score=108.18 Aligned_cols=200 Identities=15% Similarity=0.119 Sum_probs=125.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
..+-+.++++...+.++.++|...- |.++.|..+...+...|.+||+|....++.+|+ .-|.. .+-.+.+.|..+.+
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~-~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPS-DDVNRPFQTGPPGN 388 (944)
T ss_pred heeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCch-hhhhcceeecCCCc
Confidence 3445567788888899999987652 334444444445555889999999999999998 33443 47788888877654
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
............ .+.....+.+ +.+.. .+..
T Consensus 389 ~~~~~a~~~~~~------------------------------------~~~~~~~~~h------------g~p~~-~pr~ 419 (944)
T KOG4307|consen 389 LGRNGAPPFQAG------------------------------------VPPPVIQNNH------------GRPIA-PPRA 419 (944)
T ss_pred cccccCcccccc------------------------------------CCCCcccccC------------CCCCC-Cccc
Confidence 322111110000 0000000000 00000 0000
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEE-EEEecC----CCeeEEEEeCCHH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH-IYVDKR----SAGFVYLRFESTE 556 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~-v~l~~~----~~g~afV~F~~~e 556 (591)
.. .+..-.........||+|..| |.+++ +.++..+|...-.|+. |+|... -.+.|||.|..++
T Consensus 420 ~~--~~gq~vp~P~~ag~~lyv~~l--P~~t~--------~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~ 487 (944)
T KOG4307|consen 420 MV--RPGQNVPFPGGAGGALYVFQL--PVMTP--------IVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPT 487 (944)
T ss_pred cc--CCCCCCCCCCCccceEEeccC--Ccccc--------ccchhhhhhhhhhhhheeEeccCCcccccchhhheecccc
Confidence 00 000011223456779999999 99988 7889999998877776 666432 3578899999999
Q ss_pred HHHHHHHHhcccccCCeEEEEEEeCchhh
Q 007742 557 AAASAQRAMHMRWFARRLISAIFMKPEDY 585 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 585 (591)
++..|...-+-..++.+.|.|.-+.+...
T Consensus 488 a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 488 APLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred ccchhhhcccccccCceEEEeechhhHHH
Confidence 99999988777778888899988776654
No 107
>PLN03213 repressor of silencing 3; Provisional
Probab=99.09 E-value=3.9e-10 Score=110.36 Aligned_cols=77 Identities=26% Similarity=0.473 Sum_probs=70.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCH--HHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL--EHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~--~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...|||+||++.+++++|..+|..||.|..|.|++. +| +|||||+|.+. .++.+||..|||. .+.|+.|+|..
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGA-EWKGR~LKVNK 84 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGC-VWKGGRLRLEK 84 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCC-eecCceeEEee
Confidence 379999999999999999999999999999999944 55 99999999987 7899999999996 79999999998
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8754
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.08 E-value=2.5e-10 Score=115.16 Aligned_cols=79 Identities=41% Similarity=0.665 Sum_probs=76.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
..|||+|+|+.+++++|..+|...|.|..+.++.|..+|..+||||++|.+.++|..|+..|||. ++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~-~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA-EFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc-ccCCceEEeecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999995 89999999999754
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.07 E-value=9.4e-10 Score=84.17 Aligned_cols=73 Identities=41% Similarity=0.667 Sum_probs=66.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 222 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
+|+|+|||+.+++++|.++|..+|.|..+.+..+..+ ...|+|||+|.+.++|..|+ .+++..+.|..+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987664 67899999999999999999 6889889999998753
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=7.4e-10 Score=83.92 Aligned_cols=70 Identities=54% Similarity=0.814 Sum_probs=64.6
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 326 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 326 v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
|.|||..+++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|..|+..|++. .+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~-~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK-ELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC-eeCCcEEEe
Confidence 5799999999999999999999999999888767888999999999999999999999985 689999876
No 111
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.5e-10 Score=101.53 Aligned_cols=81 Identities=42% Similarity=0.713 Sum_probs=77.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||++|...+++..|...|-+||.|..|.++.+..+++.+||+||+|...++|..||..||+. ++.|+.|+|.++++
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes-EL~GrtirVN~AkP 89 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES-ELFGRTIRVNLAKP 89 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh-hhcceeEEEeecCC
Confidence 89999999999999999999999999999999999989999999999999999999999999996 89999999999876
Q ss_pred CC
Q 007742 402 HV 403 (591)
Q Consensus 402 ~~ 403 (591)
..
T Consensus 90 ~k 91 (298)
T KOG0111|consen 90 EK 91 (298)
T ss_pred cc
Confidence 43
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=2.7e-09 Score=76.76 Aligned_cols=56 Identities=45% Similarity=0.713 Sum_probs=49.9
Q ss_pred HHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 338 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 338 l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
|+++|++||.|..|.+.... .++|||+|.+.++|..|+..|||. .|.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~-~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGR-QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTS-EETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEC
Confidence 68999999999999997653 589999999999999999999997 699999999875
No 113
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.01 E-value=3e-09 Score=81.31 Aligned_cols=74 Identities=50% Similarity=0.761 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 323 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
+|+|.|||..+++++|.++|..+|.|..+.+..+..+ ...|+|||+|.+.++|..|+..+++. .+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~-~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGK-ELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEeC
Confidence 4899999999999999999999999999999877533 66899999999999999999999996 59999998863
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.01 E-value=8.5e-09 Score=102.08 Aligned_cols=80 Identities=48% Similarity=0.811 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
..+|||+|||..+++++|.++|..||.|..|.+..+..++.++|+|||+|.+.++|..|+..++|. .|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~-~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK-ELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC-eECCceeEeeccc
Confidence 489999999999999999999999999999999999879999999999999999999999999996 7999999999865
Q ss_pred C
Q 007742 401 D 401 (591)
Q Consensus 401 ~ 401 (591)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 115
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.00 E-value=4.5e-10 Score=106.96 Aligned_cols=214 Identities=18% Similarity=0.216 Sum_probs=129.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE---TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~---~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
..|.|.||.+.++.++++.+|...|.|..+.|+.+.. .......|||.|.+...+..|. .|.+.+ |-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntv-fvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTV-FVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccce-eeeeeEEEEe
Confidence 4899999999999999999999999999998875432 2344568999999999999887 677754 7777777765
Q ss_pred ecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCC
Q 007742 399 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPV 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (591)
..+.... ... .+........+++.+.+...+.+..+.. ..+..+..
T Consensus 86 ~~~~~~p-----------------------~r~----af~~l~~~navprll~pdg~Lp~~~~lt------~~nh~p~a- 131 (479)
T KOG4676|consen 86 YGDEVIP-----------------------DRF----AFVELADQNAVPRLLPPDGVLPGDRPLT------KINHSPNA- 131 (479)
T ss_pred cCCCCCc-----------------------cHH----HHHhcCcccccccccCCCCccCCCCccc------cccCCccc-
Confidence 4321110 000 1111111122222222222111111110 01111110
Q ss_pred CCCCCCccccccccc-cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEe-cCCCeeEEEEeCCHH
Q 007742 479 PAVTAPVIPNMAAEF-IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFESTE 556 (591)
Q Consensus 479 ~~~~~~~~~~~~~~~-~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~-~~~~g~afV~F~~~e 556 (591)
..-.|.+|..+... ...-.++|+|.+|.+.+. ..++.++|..+|.|.+..+. +....+|.|+|....
T Consensus 132 -ilktP~Lp~~~~A~kleeirRt~~v~sl~~~~~----------l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qt 200 (479)
T KOG4676|consen 132 -ILKTPELPPQAAAKKLEEIRRTREVQSLISAAI----------LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQT 200 (479)
T ss_pred -eecCCCCChHhhhhhhHHHHhhhhhhcchhhhc----------chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhh
Confidence 00113333333221 122237899999944333 67899999999999988763 334556779999988
Q ss_pred HHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 557 AAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
+...|+. ++|+.|.-+...+....+.
T Consensus 201 s~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 201 SSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 8888887 6888887555555554443
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.00 E-value=1.3e-09 Score=82.38 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=53.9
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeecCCC--CCccceEEEEecCcchHHHHH-HHcCCccCCeeEEe
Q 007742 234 ERDVYEFFS----KAGKVRDVR-LIMDRNS--RRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293 (591)
Q Consensus 234 e~~l~~~f~----~~G~i~~v~-~~~d~~~--g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v 293 (591)
+++|.++|. .||.|..|. ++.++.+ |.++|||||+|.+.++|.+|+ .|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888998 999999995 7777766 899999999999999999999 69999999999976
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=4.3e-11 Score=124.97 Aligned_cols=238 Identities=18% Similarity=0.167 Sum_probs=182.4
Q ss_pred CcEEEEeCCCCCCCHH-HHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATER-DVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~-~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
....++.++-+..... .....|..+|.|..|++......-...-++++++.....+..|....+..+.++.+.|..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3556677776665444 567889999999999887633322333389999999999999999999999999888877665
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
..........+. ..-...++|+.||++.+.+.+|...|.++|.+..+.+......+..+|+|||+|..++++.+
T Consensus 651 ~~~~~~~kvs~n------~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 651 EEKEENFKVSPN------EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred hhhhhccCcCch------HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 442211111100 00112578999999999999999999999998888877666688889999999999999999
Q ss_pred HHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccC
Q 007742 379 AQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNG 458 (591)
Q Consensus 379 a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (591)
|+....+. +.|+
T Consensus 725 aV~f~d~~--~~gK------------------------------------------------------------------ 736 (881)
T KOG0128|consen 725 AVAFRDSC--FFGK------------------------------------------------------------------ 736 (881)
T ss_pred hhhhhhhh--hhhh------------------------------------------------------------------
Confidence 99555553 3331
Q ss_pred ccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEE
Q 007742 459 SAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHI 538 (591)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v 538 (591)
..|+|.|. |+..| .+.|..+|.++|++.++
T Consensus 737 ----------------------------------------~~v~i~g~--pf~gt--------~e~~k~l~~~~gn~~~~ 766 (881)
T KOG0128|consen 737 ----------------------------------------ISVAISGP--PFQGT--------KEELKSLASKTGNVTSL 766 (881)
T ss_pred ----------------------------------------hhhheeCC--CCCCc--------hHHHHhhccccCCcccc
Confidence 13789998 88887 78999999999999998
Q ss_pred EEe----cCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeC
Q 007742 539 YVD----KRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMK 581 (591)
Q Consensus 539 ~l~----~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~ 581 (591)
.++ +.++|.|||.|.+..+|..++..+.+..+.-+.+.|...+
T Consensus 767 ~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 767 RLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred chhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 763 4578999999999999999999888887777776666633
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=8.5e-09 Score=102.59 Aligned_cols=164 Identities=23% Similarity=0.193 Sum_probs=109.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecC--CCCCccc---eEEEEecCcchHHHHHHHcCCccCCeeEEe
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR--NSRRSKG---VGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~--~~g~~~G---~afV~F~~~e~A~~Al~l~g~~i~g~~i~v 293 (591)
-+++||||+||++++|+.|...|..||.+.-=.-.+.. ..-..+| |+|+.|.+...+..-|...-..-.+--+.|
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 35889999999999999999999999987532221111 1113456 999999999888777632111111122222
Q ss_pred ccCccccccccccCC-CCC----CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeccCCCCCcccEEE
Q 007742 294 KPSEAEKNLVQSNTS-AGG----TATGPYGAIDRKLYVGNLHFNMTETQLRKLFE-PFGPVELVQLPLDIETGQCKGFGF 367 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~a~ 367 (591)
..........+.... ... ......--+.+||||++||-.++.++|..+|+ -||.|..+-|-.|+.-+=++|.|-
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 211111110110000 000 00111222358999999999999999999999 799999999988876777899999
Q ss_pred EEeCCHHHHHHHHHH
Q 007742 368 VQFAQLEHAKAAQSA 382 (591)
Q Consensus 368 Vef~~~~~a~~a~~~ 382 (591)
|.|.+..+-.+||.+
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 999999998888854
No 119
>smart00361 RRM_1 RNA recognition motif.
Probab=98.96 E-value=3.2e-09 Score=80.18 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=53.0
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeccCCC--CCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 335 ETQLRKLFE----PFGPVELVQ-LPLDIET--GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 335 ~~~l~~~f~----~~g~i~~v~-i~~~~~~--~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
+++|+++|. +||.|..|. |+.+..+ +.++|+|||+|.+.++|..|+..|||. .|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~-~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR-YFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEe
Confidence 467788887 999999985 6666555 889999999999999999999999997 699999976
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.92 E-value=2.6e-09 Score=103.11 Aligned_cols=177 Identities=26% Similarity=0.329 Sum_probs=139.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCC-ccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ-LLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~-~i~g~~i~v~~~~ 297 (591)
..+++|++++.+.+.+.++..++..+|.+....+.....+..++|+++|.|...+.+..|+.+.+. .+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 468999999999998888999999999998888888778889999999999999999999988875 4555554443222
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
.-.. ... .........+....++|.+|+..++.++|+..|..+|.|..+.++....++...|++||.|.+...+.
T Consensus 167 ~~~~--~~~---n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 167 RRGL--RPK---NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred cccc--ccc---chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 2110 000 00101111222244559999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 378 AAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 378 ~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
.++.. +.. .+.+.++.+.+..+.
T Consensus 242 ~~~~~-~~~-~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 242 LALND-QTR-SIGGRPLRLEEDEPR 264 (285)
T ss_pred HHhhc-ccC-cccCcccccccCCCC
Confidence 99865 554 689999999887654
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=3.8e-09 Score=92.68 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~-G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
....+||..+|..+-+.+|..+|.+| |.+..+++-+++.||.++|||||+|.+.+.|..|. .||+..+.|+-|.+...
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999988 78888899899999999999999999999999999 69999999998888665
Q ss_pred cc
Q 007742 297 EA 298 (591)
Q Consensus 297 ~~ 298 (591)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 44
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.1e-09 Score=99.17 Aligned_cols=81 Identities=23% Similarity=0.335 Sum_probs=76.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+-..|||-.|.+.+|.++|.-+|+.||+|.+|.+++|..||.+-.||||+|.+.+++.+|. .|++..|..+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 345589999999999999999999999999999999999999999999999999999999999 8999999999999976
Q ss_pred Cc
Q 007742 296 SE 297 (591)
Q Consensus 296 ~~ 297 (591)
+.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 64
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=2.9e-10 Score=118.93 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=126.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCccc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~~ 299 (591)
..++||.||++.+.+.+|...|..+|.+..+++..-.+.+..+|+|||+|...+++.+|+.+.-..+.|+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK---------- 736 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK---------- 736 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh----------
Confidence 4678999999999999999999999999888888777788999999999999999999998776666652
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHH
Q 007742 300 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379 (591)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a 379 (591)
..|+|.|+|+..|.+.+..+|.++|.+..+.++... .|.++|.|||.|.+..+|..+
T Consensus 737 ----------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 737 ----------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred ----------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhh
Confidence 578999999999999999999999999999887775 889999999999999999999
Q ss_pred HHHhcCCeeeCCeEEEEEEe
Q 007742 380 QSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 380 ~~~l~g~~~~~g~~l~v~~~ 399 (591)
+....+. .+.-..+.|...
T Consensus 794 ~~s~d~~-~~rE~~~~v~vs 812 (881)
T KOG0128|consen 794 VASVDVA-GKRENNGEVQVS 812 (881)
T ss_pred cccchhh-hhhhcCcccccc
Confidence 8777764 355555555443
No 124
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=2.2e-09 Score=94.43 Aligned_cols=148 Identities=26% Similarity=0.371 Sum_probs=119.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~~~~ 298 (591)
-++|||+||-..++|+-|.++|-+.|+|+.|.|..++. +..+ ||||.|.+.-.+..|+. +||..+.+..+.|++-..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 38999999999999999999999999999999887765 4555 99999999999999995 899999999888765421
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
..- .-|...++++.+...|+..|++..+.+..+. .|....++|+.+.-......
T Consensus 87 ~sh-------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 87 NSH-------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred CCc-------------------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcH
Confidence 100 1255678889999999999999999998876 46677889999988888778
Q ss_pred HHHHhcCCeeeCCeEEEE
Q 007742 379 AQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 379 a~~~l~g~~~~~g~~l~v 396 (591)
++....+ +...-+++.+
T Consensus 141 ~~~~y~~-l~~~~~~~~~ 157 (267)
T KOG4454|consen 141 ALDLYQG-LELFQKKVTI 157 (267)
T ss_pred Hhhhhcc-cCcCCCCccc
Confidence 8866666 4455555544
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9.7e-09 Score=96.70 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 317 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
..|+...|||..|.+-++.++|.-+|+.||+|.+|.|+.+..+|.+-.||||+|.+.+++.+|.-.|++. .|+++.|.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv-LIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV-LIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce-eeccceEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999999995 699999999
Q ss_pred EEecCC
Q 007742 397 SSVTDH 402 (591)
Q Consensus 397 ~~~~~~ 402 (591)
.+++.-
T Consensus 314 DFSQSV 319 (479)
T KOG0415|consen 314 DFSQSV 319 (479)
T ss_pred ehhhhh
Confidence 987543
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.79 E-value=6.3e-09 Score=95.47 Aligned_cols=89 Identities=31% Similarity=0.592 Sum_probs=75.1
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEec------CCCeeEEEEeCCHHHHHHHHHHhcc
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK------RSAGFVYLRFESTEAAASAQRAMHM 567 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~------~~~g~afV~F~~~e~A~~A~~~l~g 567 (591)
..-++++|++.|++.+-. ..++|++++.++|.+||.|..|.|-. +-.--.||+|..+++|.+|+-.|||
T Consensus 277 l~~ptkvlllrnmVg~ge-----vd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 277 LKCPTKVLLLRNMVGAGE-----VDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred HhcchHHHHhhhhcCccc-----ccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC
Confidence 456788899999976554 45677899999999999999887621 1233579999999999999999999
Q ss_pred cccCCeEEEEEEeCchhhhh
Q 007742 568 RWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 568 ~~~~g~~l~v~~~~~~~~~~ 587 (591)
++|+|+.|...|++...|..
T Consensus 352 RyFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 352 RYFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred ceecceeeeheeccHHhhhh
Confidence 99999999999999999875
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=2.8e-08 Score=87.34 Aligned_cols=82 Identities=29% Similarity=0.503 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPF-GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~-g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
....++|..+|..+.+..|...|.++ |.|..+++-+++.||.++|||||+|.+.+.|.-|...||+.| |.|+.|.+.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL-l~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL-LMEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh-hhhheeeeEE
Confidence 34689999999999999999999998 678888888999999999999999999999999999999974 9999999998
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7654
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.68 E-value=1.7e-08 Score=96.35 Aligned_cols=164 Identities=20% Similarity=0.215 Sum_probs=119.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRN---SRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~---~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~ 297 (591)
..|.|.||.+.+|.++++.+|...|.|..+.|+.... .....-.|||.|.+...+..|..|.++++-+..|.|.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4899999999999999999999999999999987322 2334568999999999999999999999999999986543
Q ss_pred ccccccc-------------ccCCCCCCC-----C------------CCCCC----------CCceEEEcCCCCCCCHHH
Q 007742 298 AEKNLVQ-------------SNTSAGGTA-----T------------GPYGA----------IDRKLYVGNLHFNMTETQ 337 (591)
Q Consensus 298 ~~~~~~~-------------~~~~~~~~~-----~------------~~~~~----------~~~~l~v~nl~~~~~~~~ 337 (591)
....... ...++.+.. . .+..+ ..++|+|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2221100 000000000 0 00000 136899999999999999
Q ss_pred HHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC
Q 007742 338 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 390 (591)
Q Consensus 338 l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~ 390 (591)
+.++|..+|.|....+- .+...-+|.|+|........|+ .++|. .+.
T Consensus 168 ~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~hal-r~~gr-e~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHAL-RSHGR-ERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHH-Hhcch-hhh
Confidence 99999999999776664 3334557889999999999998 45553 344
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=4.1e-08 Score=92.73 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH--HcCCccCCeeEEeccC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA--LSGQLLLGQPVMVKPS 296 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~--l~g~~i~g~~i~v~~~ 296 (591)
...+|||++|-..+++.+|+++|.+||.|..|.++.. +|+|||+|.+-+.|+.|++ +|...|.|..|+|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4589999999999999999999999999999999854 5699999999999999993 7888899999999998
Q ss_pred cc
Q 007742 297 EA 298 (591)
Q Consensus 297 ~~ 298 (591)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 76
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=4.3e-08 Score=103.48 Aligned_cols=160 Identities=21% Similarity=0.343 Sum_probs=129.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
.+++||++||+..+++.+|+..|..+|.|..|.|-.-. .+...-||||.|.+...+..|. ++.+..|....+.+.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 35889999999999999999999999999998886543 2455679999999999999998 788888776666554442
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
. .+.+++.+++++|.+.+....|..+|..||+|..|.+-. ..-||||+|.+...|+
T Consensus 450 ~------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq 505 (975)
T KOG0112|consen 450 P------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQ 505 (975)
T ss_pred c------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccch
Confidence 2 122348899999999999999999999999999887642 2459999999999999
Q ss_pred HHHHHhcCCeeeCC--eEEEEEEecCCCC
Q 007742 378 AAQSALNGKLEIVG--RTLKVSSVTDHVG 404 (591)
Q Consensus 378 ~a~~~l~g~~~~~g--~~l~v~~~~~~~~ 404 (591)
.|+..|-|. .|+| +.+.|.++.+-..
T Consensus 506 ~a~~~~rga-p~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 506 AATHDMRGA-PLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred hhHHHHhcC-cCCCCCcccccccccCCCC
Confidence 999999995 5666 6788888765433
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=5.1e-08 Score=102.87 Aligned_cols=158 Identities=22% Similarity=0.341 Sum_probs=124.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.+.+|+++||+..+++.+|...|..+|.|..|.|-... .+...-|+||.|.+...+..|...+.+.+ |..-.+.+.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~-I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPL-IGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCc-cccCccccccc
Confidence 36899999999999999999999999999999986654 44445689999999999999988888864 32223322221
Q ss_pred cCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCC
Q 007742 400 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 479 (591)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (591)
..
T Consensus 449 ~~------------------------------------------------------------------------------ 450 (975)
T KOG0112|consen 449 QP------------------------------------------------------------------------------ 450 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHH
Q 007742 480 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAA 559 (591)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~ 559 (591)
...++.-+++.+| +.+.. ...|..+|..||.|..|.+. ++.-+|||.|++...|+
T Consensus 451 --------------kst~ttr~~sggl--g~w~p--------~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq 505 (975)
T KOG0112|consen 451 --------------KSTPTTRLQSGGL--GPWSP--------VSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQ 505 (975)
T ss_pred --------------ccccceeeccCCC--CCCCh--------HHHHHHHhhccCcceeeecc-cCCcceeeecccCccch
Confidence 1234456889998 55544 78899999999999999886 46779999999999999
Q ss_pred HHHHHhcccccCC--eEEEEEEeCc
Q 007742 560 SAQRAMHMRWFAR--RLISAIFMKP 582 (591)
Q Consensus 560 ~A~~~l~g~~~~g--~~l~v~~~~~ 582 (591)
.|++.|.|..|+| +.|.|.|+.+
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccC
Confidence 9999999999975 5588888764
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=2.4e-07 Score=92.63 Aligned_cols=82 Identities=23% Similarity=0.411 Sum_probs=75.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.+.|||.+|...+-..+|+++|++||.|+...|+.+..+.-.+||+||++.+.++|.+||..||.+ +|.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrT-ELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRT-ELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhh-hhcceeeeeeecc
Confidence 589999999999999999999999999999999988877788999999999999999999999996 8999999999876
Q ss_pred CCC
Q 007742 401 DHV 403 (591)
Q Consensus 401 ~~~ 403 (591)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 443
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=2e-07 Score=93.16 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=73.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
-++.|||.+|...+...+|+.+|++||.|+..+++.+..+.-.++||||++.+..+|.+|| .|+.+.+.|+-|.|..+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4588999999999999999999999999999999999888888999999999999999999 699999999999996544
No 134
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.52 E-value=2.2e-07 Score=96.59 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=73.6
Q ss_pred ccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc
Q 007742 487 PNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 487 ~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
+.+.......-+++|+|+.| +..++ +.||..+|..||.|.+|.+. .+.|||||.+...++|.+|+.+|+
T Consensus 410 P~I~pd~isV~SrTLwvG~i--~k~v~--------e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~ 478 (894)
T KOG0132|consen 410 PTIPPDHISVCSRTLWVGGI--PKNVT--------EQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLS 478 (894)
T ss_pred CCCCCcceeEeeeeeeeccc--cchhh--------HHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHh
Confidence 33344444566889999999 77766 89999999999999999887 469999999999999999999999
Q ss_pred ccccCCeEEEEEEeCc
Q 007742 567 MRWFARRLISAIFMKP 582 (591)
Q Consensus 567 g~~~~g~~l~v~~~~~ 582 (591)
+..|.++.|+|.|+--
T Consensus 479 n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 479 NVKVADKTIKIAWAVG 494 (894)
T ss_pred cccccceeeEEeeecc
Confidence 9999999999999743
No 135
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.2e-08 Score=98.26 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=126.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
..+|++||.+.++..+|..+|...-. ...-+|+ ..||+||.+.+...|.+|++.|+|++++.|+.+.|.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999986521 1111222 257999999999999999999999999999999887653
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
++
T Consensus 75 ~k------------------------------------------------------------------------------ 76 (584)
T KOG2193|consen 75 PK------------------------------------------------------------------------------ 76 (584)
T ss_pred hH------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEe--cCCCeeEEEEeCCHHHH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD--KRSAGFVYLRFESTEAA 558 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~--~~~~g~afV~F~~~e~A 558 (591)
.-.++.+.|.|+ |.-+. ++.|..+...||.|..|+.. ..-....-|+|.+.+.+
T Consensus 77 --------------kqrsrk~Qirni--ppql~--------wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~ 132 (584)
T KOG2193|consen 77 --------------KQRSRKIQIRNI--PPQLQ--------WEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQH 132 (584)
T ss_pred --------------HHHhhhhhHhcC--CHHHH--------HHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHH
Confidence 012234779999 66554 88899999999999998752 22344557889999999
Q ss_pred HHHHHHhcccccCCeEEEEEEeCchhhhhccC
Q 007742 559 ASAQRAMHMRWFARRLISAIFMKPEDYEAKFK 590 (591)
Q Consensus 559 ~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~ 590 (591)
..||++|+|..|....+.|.|.+.++..++-|
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPdeq~~q~~p 164 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDEQNAQHQP 164 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchhhhhccCc
Confidence 99999999999999999999999888766544
No 136
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4.9e-06 Score=83.32 Aligned_cols=162 Identities=23% Similarity=0.280 Sum_probs=106.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccC---CCCCccc---EEEEEeCCHHHHHHHHHHhcCCeeeCCeEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI---ETGQCKG---FGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~---~~~~~~g---~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l 394 (591)
++.|||++||+.++|+.|...|..||.+. |..+... ..-.++| |+|+.|.+...+...|.++.- .-.+--+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--GEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh--cccceEE
Confidence 58999999999999999999999999874 4444211 1123456 999999999988877776653 1222233
Q ss_pred EEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCC
Q 007742 395 KVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQP 474 (591)
Q Consensus 395 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (591)
.|.....+... .+..+|...+ ....
T Consensus 336 ~vss~~~k~k~----VQIrPW~laD--------------------------------------------s~fv------- 360 (520)
T KOG0129|consen 336 KVSSPTIKDKE----VQIRPWVLAD--------------------------------------------SDFV------- 360 (520)
T ss_pred EEecCcccccc----eeEEeeEecc--------------------------------------------chhh-------
Confidence 33322211110 0000000000 0000
Q ss_pred CCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhc-cccceEEEEEecC-----CCeeE
Q 007742 475 AVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKR-----SAGFV 548 (591)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~-~~G~V~~v~l~~~-----~~g~a 548 (591)
......-.+.++|||++| |-.++ -++|..+|. -||.|..|-|+.+ ++|-|
T Consensus 361 --------------~d~sq~lDprrTVFVGgv--prpl~--------A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 361 --------------LDHNQPIDPRRTVFVGGL--PRPLT--------AEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred --------------hccCcccCccceEEecCC--CCcch--------HHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 000112356789999999 76666 688999998 8999999988654 68999
Q ss_pred EEEeCCHHHHHHHHHH
Q 007742 549 YLRFESTEAAASAQRA 564 (591)
Q Consensus 549 fV~F~~~e~A~~A~~~ 564 (591)
-|.|.+..+-.+||.+
T Consensus 417 RVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISA 432 (520)
T ss_pred eeeecccHHHHHHHhh
Confidence 9999999999999874
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=3.1e-07 Score=85.78 Aligned_cols=85 Identities=22% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 215 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
....+...+||+|+.+.+|.+++..+|..||.|..|.+.+++.+|.++|||||+|.+.+.+..|+.|++..|.|.++.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 76543
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.39 E-value=9.8e-07 Score=82.02 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
+....+|+|.|||+.++++||+++|..||.+..+.+.+++. |.+.|+|-|.|..-++|..|+ .+++..+.|..|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 33458899999999999999999999999999999888865 899999999999999999999 6999999999988865
Q ss_pred Cc
Q 007742 296 SE 297 (591)
Q Consensus 296 ~~ 297 (591)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 43
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=1.5e-06 Score=82.50 Aligned_cols=76 Identities=29% Similarity=0.407 Sum_probs=68.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
...+|||++|-..+++.+|.+.|.+||+|..|.+... ++.|||+|.+-+.|+.|...+-+.+.|+|..|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3589999999999999999999999999999998754 4589999999999999988877778899999999987
Q ss_pred cC
Q 007742 400 TD 401 (591)
Q Consensus 400 ~~ 401 (591)
..
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 65
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.38 E-value=1.8e-06 Score=64.47 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=51.2
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhcccc-ceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEE
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAI 578 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G-~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~ 578 (591)
.|+|.|| |.... ...|..-|..++..+| .|..| ..+.|+|.|.+.+.|..|.+.|+|..+.|+.|.|+
T Consensus 4 ~L~V~NL--P~~~d----~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNL--PTNKD----PSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES----TTS-----HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecC--CCCCC----HHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5899999 76543 3445678999999996 66666 35789999999999999999999999999999999
Q ss_pred EeCc
Q 007742 579 FMKP 582 (591)
Q Consensus 579 ~~~~ 582 (591)
|.+.
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9854
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=1.1e-06 Score=88.62 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=67.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEecc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 295 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~ 295 (591)
.....|||+|||+++++.+|.++|..||.|....|......+...+||||+|.+..++..|+..+...|++++|.|.-
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 344669999999999999999999999999887776654334444999999999999999999888889999999964
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.36 E-value=3.8e-07 Score=82.59 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=115.9
Q ss_pred EEEEeCCCCCCCHHH-H--HHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 222 TVFAYQMPLKATERD-V--YEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 222 ~l~V~nLp~~~te~~-l--~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
.++++++-..+..+- | ...|..+-.+....++.+.. +.-.++||+.|.....-..+- .-+++.+.-.+|++....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 345555544443322 2 55566655555555665544 567899999998766665555 456667776666664332
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
.......... ....-.||.+.|...++.+.|-..|.+|-.-....+++++.+++++||+||-|.++.++.
T Consensus 177 swedPsl~ew----------~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 177 SWEDPSLAEW----------DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ccCCcccccC----------ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 2111110000 111368999999999999999999999988888888999999999999999999999999
Q ss_pred HHHHHhcCCeeeCCeEEEEEE
Q 007742 378 AAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 378 ~a~~~l~g~~~~~g~~l~v~~ 398 (591)
.||..|+|+ .++.++|++..
T Consensus 247 rAmrem~gk-yVgsrpiklRk 266 (290)
T KOG0226|consen 247 RAMREMNGK-YVGSRPIKLRK 266 (290)
T ss_pred HHHHhhccc-ccccchhHhhh
Confidence 999999997 47888887753
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.30 E-value=7.9e-07 Score=80.58 Aligned_cols=81 Identities=21% Similarity=0.389 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
...-+||-+.|...++.+.|...|.+|-.....++++++.||+++|||||-|.++.++..|| +|+|..++.++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34588999999999999999999999999999999999999999999999999999999999 89999999999988655
Q ss_pred cc
Q 007742 297 EA 298 (591)
Q Consensus 297 ~~ 298 (591)
..
T Consensus 268 ~w 269 (290)
T KOG0226|consen 268 EW 269 (290)
T ss_pred hH
Confidence 43
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.28 E-value=2.6e-06 Score=79.28 Aligned_cols=78 Identities=28% Similarity=0.525 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
..|+|.|||+.++..+|+++|..||.+..+.|..+. .|.+.|.|-|.|..-++|..|++.++| +.++|..+.+.....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG-VALDGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC-cccCCceeeeEEecC
Confidence 789999999999999999999999999999998886 889999999999999999999999999 689999998887643
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.27 E-value=5.3e-06 Score=65.68 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=63.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC----eeEEe
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG----QPVMV 293 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~--G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g----~~i~v 293 (591)
+||+|+|||...|.++|.+++... |...-+-+..|-.++...|||||-|.+++.|.... .++|..+.. +...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998753 67777888889889999999999999999999988 689888752 34444
Q ss_pred ccCc
Q 007742 294 KPSE 297 (591)
Q Consensus 294 ~~~~ 297 (591)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 4443
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.25 E-value=1.2e-05 Score=83.19 Aligned_cols=89 Identities=25% Similarity=0.337 Sum_probs=76.1
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCC---CCcccEEEEEeCCHHHHHHHHHHhcCCee
Q 007742 312 TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET---GQCKGFGFVQFAQLEHAKAAQSALNGKLE 388 (591)
Q Consensus 312 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~---~~~~g~a~Vef~~~~~a~~a~~~l~g~~~ 388 (591)
+....+.|.++.|||+||++.++++.|...|..||+|..|.|.+.... .....++||-|.+-.+|..|+..|+|. .
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~-i 243 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI-I 243 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce-e
Confidence 444556777899999999999999999999999999999999876421 234568999999999999999999996 6
Q ss_pred eCCeEEEEEEecC
Q 007742 389 IVGRTLKVSSVTD 401 (591)
Q Consensus 389 ~~g~~l~v~~~~~ 401 (591)
+.+..+++.|.+.
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999998754
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.24 E-value=7.2e-06 Score=64.94 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=66.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC----CeEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPF--GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV----GRTLK 395 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~----g~~l~ 395 (591)
++|+|.|||...+.++|.+++... |...-+.++.|..++...|||||-|.+++.|....+.++|. .+. .+...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~-~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK-KWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC-ccccCCCCcEEE
Confidence 689999999999999999888764 67788899999888999999999999999999999999996 343 45666
Q ss_pred EEEec
Q 007742 396 VSSVT 400 (591)
Q Consensus 396 v~~~~ 400 (591)
|.|+.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 76653
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.24 E-value=2.9e-06 Score=87.55 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecC---CCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR---NSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~---~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
.....+.|||+||++.+++..|...|..||+|.+|+++.-. ..-...-||||.|.+-.+|.+|+ .|+|+.+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 34456889999999999999999999999999999998743 22345679999999999999999 699999999999
Q ss_pred EeccCcc
Q 007742 292 MVKPSEA 298 (591)
Q Consensus 292 ~v~~~~~ 298 (591)
++.|...
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9988854
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=6.6e-07 Score=79.14 Aligned_cols=79 Identities=27% Similarity=0.335 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
+..++|||.||...++++-|.++|-..|+|..|.|+..+ .+..+ ||||.|.+..+..-|++.+|| +.+.+..+.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng-~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENG-DDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhccc-chhccchhhccc
Confidence 345899999999999999999999999999999998776 55556 999999999999999999999 578999888876
Q ss_pred ec
Q 007742 399 VT 400 (591)
Q Consensus 399 ~~ 400 (591)
-+
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 43
No 150
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=2.2e-06 Score=86.53 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=67.9
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCe
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 573 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~ 573 (591)
...++.+|+|.|| |.+++ .++|..+|+.||.|..|.......|.+||+|-++-+|+.|+++|+++.|.|+
T Consensus 71 ~~~~~~~L~v~nl--~~~Vs--------n~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 71 KDMNQGTLVVFNL--PRSVS--------NDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccCccceEEEEec--CCcCC--------HHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 3567889999999 88888 8999999999999999988888899999999999999999999999999999
Q ss_pred EEE
Q 007742 574 LIS 576 (591)
Q Consensus 574 ~l~ 576 (591)
.|.
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 987
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.12 E-value=2.5e-06 Score=82.57 Aligned_cols=172 Identities=18% Similarity=0.172 Sum_probs=125.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
..+++++++...+.+.++..++..+|.+....+........++|++++.|...+.+..|+ ++.+...+.++.+.....+
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-HhhhccccccccccCcccc
Confidence 378999999999998889999999998877777665567788999999999999999999 4555323444444333221
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
... .. +.
T Consensus 167 ~~~--~~-----------------------------------------------------------------------~~ 173 (285)
T KOG4210|consen 167 RRG--LR-----------------------------------------------------------------------PK 173 (285)
T ss_pred ccc--cc-----------------------------------------------------------------------cc
Confidence 100 00 00
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 555 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~ 555 (591)
. .........+....+|.|+ ++.++ .++|..+|..+|.|..+.++.. ..|++||.|.+.
T Consensus 174 n------~~~~~~~~~s~~~~~~~~~--~f~~~--------~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~ 237 (285)
T KOG4210|consen 174 N------KLSRLSSGPSDTIFFVGEL--DFSLT--------RDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAG 237 (285)
T ss_pred c------hhcccccCccccceeeccc--ccccc--------hHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhc
Confidence 0 0000001223334559999 88777 7889999999999999998643 578999999999
Q ss_pred HHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 556 EAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
..+..|+.. ....++|.++.+.+-.+.
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 238 NSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hhHHHHhhc-ccCcccCcccccccCCCC
Confidence 999999987 888899999999886654
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.12 E-value=4.7e-06 Score=77.94 Aligned_cols=78 Identities=33% Similarity=0.555 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
...+||+|+.+.++.++|...|+.||.|..|.|+.+...++++||+||+|.+.+.+.+|+. |++. .|.|+.+.|.+..
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs-~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS-EIPGPAIEVTLKR 178 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc-ccccccceeeeee
Confidence 4799999999999999999999999999999999998888999999999999999999996 9997 6999999998764
No 153
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.09 E-value=1.6e-06 Score=79.24 Aligned_cols=70 Identities=31% Similarity=0.504 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhc-cccceEEEEEec----CCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhhhh
Q 007742 518 DLEIQGDVEEECS-KYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 518 ~~~~~edl~~~f~-~~G~V~~v~l~~----~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 587 (591)
+.++.++|+.+|. +||.|..+.|-. .-.|.+||.|...++|++|+..|||++|.|++|.+.|++...|..
T Consensus 78 ~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 78 EDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 3355788888888 999999986633 357899999999999999999999999999999999999887764
No 154
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.05 E-value=7.2e-06 Score=82.78 Aligned_cols=78 Identities=31% Similarity=0.482 Sum_probs=65.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
.+|||.|||.+++..+|.++|..||+|+...|..-...+...+||||+|.+..++..||++- .+.+++++|.|.--..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCCeeEEEEeccc
Confidence 56999999999999999999999999998877654323444499999999999999999654 4679999999986544
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.02 E-value=6.1e-07 Score=86.76 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=122.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCc-cCCeeEEeccCcc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQL-LLGQPVMVKPSEA 298 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~-i~g~~i~v~~~~~ 298 (591)
..+|++||.+.++..+|..+|.....-.+..++. -.|||||.+.+..-|..|++ ++|+. +.|..+.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998763222222222 25899999999999999994 77665 7899998877765
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
+.... +.+.|.|+|+....+.|..++..||.+..|.... +....-..-|+|.+.+.+..
T Consensus 76 kkqrs------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 76 KKQRS------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHHHh------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHH
Confidence 44321 5688999999999999999999999998886642 22233345678899999999
Q ss_pred HHHHhcCCeeeCCeEEEEEEecCCCC
Q 007742 379 AQSALNGKLEIVGRTLKVSSVTDHVG 404 (591)
Q Consensus 379 a~~~l~g~~~~~g~~l~v~~~~~~~~ 404 (591)
||..|+|. .+....+.|.|..+...
T Consensus 135 ai~kl~g~-Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 135 AIHKLNGP-QLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHhhcch-HhhhhhhhcccCchhhh
Confidence 99999995 79999999999876544
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.81 E-value=7.4e-05 Score=56.07 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=46.4
Q ss_pred cEEEEeCCCCCCCHHHH----HHHHhcCC-CeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 221 RTVFAYQMPLKATERDV----YEFFSKAG-KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l----~~~f~~~G-~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
..|+|.|||...+...| ++++..|| .|..| +.|.|+|.|.+.+.|..|. -|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999987665 55566675 67665 2478999999999999999 599999999999998
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 157
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.79 E-value=1.7e-05 Score=80.39 Aligned_cols=84 Identities=24% Similarity=0.434 Sum_probs=72.0
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhc-cccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccccc--
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF-- 570 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~-~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~-- 570 (591)
-..++++|+|.||+-||+ ..+|+.++. .+|.|..+.|.. -+..|||.|.+.++|...+.+|||..|
T Consensus 440 R~~~SnvlhI~nLvRPFT----------lgQLkelL~rtgg~Vee~WmDk-IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFT----------LGQLKELLGRTGGNVEEFWMDK-IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccch----------HHHHHHHHhhccCchHHHHHHH-hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 467889999999999988 679999998 566777776653 466789999999999999999999997
Q ss_pred -CCeEEEEEEeCchhhhhc
Q 007742 571 -ARRLISAIFMKPEDYEAK 588 (591)
Q Consensus 571 -~g~~l~v~~~~~~~~~~~ 588 (591)
+++.|.+.|+..+.+..|
T Consensus 509 sNPK~L~adf~~~deld~h 527 (718)
T KOG2416|consen 509 SNPKHLIADFVRADELDKH 527 (718)
T ss_pred CCCceeEeeecchhHHHHH
Confidence 788999999999887754
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.78 E-value=8.9e-05 Score=60.34 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=46.3
Q ss_pred ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccc-----ccCCe
Q 007742 499 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR-----WFARR 573 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~-----~~~g~ 573 (591)
.+|.|.++ ...++ .++|+++|+.||.|.+|.+.. +...|||.|.+++.|+.|+..+.-. .+.+.
T Consensus 2 ~il~~~g~--~~~~~--------re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~ 70 (105)
T PF08777_consen 2 CILKFSGL--GEPTS--------REDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGK 70 (105)
T ss_dssp -EEEEEE----SS----------HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSS
T ss_pred eEEEEecC--CCCcC--------HHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCc
Confidence 47889998 44444 899999999999999998874 4557899999999999999988644 57888
Q ss_pred EEEEEEeCc
Q 007742 574 LISAIFMKP 582 (591)
Q Consensus 574 ~l~v~~~~~ 582 (591)
.+.+.....
T Consensus 71 ~~~~~vLeG 79 (105)
T PF08777_consen 71 EVTLEVLEG 79 (105)
T ss_dssp SEEEE---H
T ss_pred eEEEEECCC
Confidence 888877653
No 159
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.72 E-value=0.00026 Score=59.98 Aligned_cols=86 Identities=16% Similarity=0.288 Sum_probs=59.1
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCe
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 573 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~ 573 (591)
.++|..+|.|.=+. |....+..+...+...|.+.|..||.|.-|.+.. +..+|.|.+-+.|.+|+. |+|.+++|+
T Consensus 23 ~GPpDaTVvVsv~~-~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 23 QGPPDATVVVSVDS-PSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp ---TT-EEEEEECS--SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred cCCCCceEEEEecC-CCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCE
Confidence 35666677776652 2333334556667889999999999988887663 467999999999999998 899999999
Q ss_pred EEEEEEeCchh
Q 007742 574 LISAIFMKPED 584 (591)
Q Consensus 574 ~l~v~~~~~~~ 584 (591)
.|.|.+-+++-
T Consensus 98 ~l~i~LKtpdW 108 (146)
T PF08952_consen 98 TLKIRLKTPDW 108 (146)
T ss_dssp EEEEEE-----
T ss_pred EEEEEeCCccH
Confidence 99999877653
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.71 E-value=4.5e-05 Score=73.31 Aligned_cols=84 Identities=23% Similarity=0.455 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVR--------DVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLL 287 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--------~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~ 287 (591)
....-+|||.+||..+++.+|.++|.++|.|. .|.|.+++.|+..+|-|.|.|.+...|++|+. +++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44568999999999999999999999998774 48888999999999999999999999999995 8999999
Q ss_pred CeeEEeccCcccc
Q 007742 288 GQPVMVKPSEAEK 300 (591)
Q Consensus 288 g~~i~v~~~~~~~ 300 (591)
|.+|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999997665433
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00018 Score=72.70 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=68.7
Q ss_pred CcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEec----CCCeeEEEEeCCHHHHHHHHHHhccccc-C
Q 007742 497 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWF-A 571 (591)
Q Consensus 497 ~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~----~~~g~afV~F~~~e~A~~A~~~l~g~~~-~ 571 (591)
-..||+|.|+ |.... +-..-|...|..+|+++|.|..+++|. ..+|++|++|.+..+|..|++.|||+.| .
T Consensus 57 ~D~vVvv~g~--PvV~~--~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGA--PVVGP--ARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCC--cccCh--hHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3458999999 77643 334456778999999999999999973 3689999999999999999999999998 5
Q ss_pred CeEEEEEEeCchh
Q 007742 572 RRLISAIFMKPED 584 (591)
Q Consensus 572 g~~l~v~~~~~~~ 584 (591)
.++..|..++.=+
T Consensus 133 nHtf~v~~f~d~e 145 (698)
T KOG2314|consen 133 NHTFFVRLFKDFE 145 (698)
T ss_pred cceEEeehhhhHH
Confidence 7888888766543
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.51 E-value=0.00024 Score=67.44 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=67.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.++||+||-+.+|.++|.+.+...| .+..+.++.+..+|+++|||+|...+....++.|..|-.+ .|.|+.-.|..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k-~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK-TIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc-eecCCCCeeecc
Confidence 6899999999999999999999887 5667778888778999999999999999999999888886 689976666544
Q ss_pred c
Q 007742 400 T 400 (591)
Q Consensus 400 ~ 400 (591)
+
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.48 E-value=0.00038 Score=55.61 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=51.6
Q ss_pred ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEE------------EecCCCeeEEEEeCCHHHHHHHHHHhc
Q 007742 499 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIY------------VDKRSAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~------------l~~~~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
..|.|.++ |... ...|..+|++||.|.... -......+..|+|.++.+|.+||. -|
T Consensus 7 ~wVtVFGf--p~~~---------~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~N 74 (100)
T PF05172_consen 7 TWVTVFGF--PPSA---------SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KN 74 (100)
T ss_dssp CEEEEE-----GGG---------HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TT
T ss_pred eEEEEEcc--CHHH---------HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hC
Confidence 45888888 6543 578999999999998875 122346688999999999999999 49
Q ss_pred ccccCCeEEE-EEEeC
Q 007742 567 MRWFARRLIS-AIFMK 581 (591)
Q Consensus 567 g~~~~g~~l~-v~~~~ 581 (591)
|..|+|..|. |.+++
T Consensus 75 G~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 75 GTIFSGSLMVGVKPCD 90 (100)
T ss_dssp TEEETTCEEEEEEE-H
T ss_pred CeEEcCcEEEEEEEcH
Confidence 9999987654 66663
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.39 E-value=0.0001 Score=68.30 Aligned_cols=79 Identities=23% Similarity=0.198 Sum_probs=59.9
Q ss_pred CCceEEEcCCC--CCCC---HHHHHHHhccCCCeeEEEEeccCCCC-CcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeE
Q 007742 320 IDRKLYVGNLH--FNMT---ETQLRKLFEPFGPVELVQLPLDIETG-QCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 393 (591)
Q Consensus 320 ~~~~l~v~nl~--~~~~---~~~l~~~f~~~g~i~~v~i~~~~~~~-~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~ 393 (591)
+++.|++.|+- -.+. ++++.+.|++||.|..|.|....... ...--.||+|..+++|.+|+-.|||+ .|+|+.
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR-yFGGr~ 358 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR-YFGGRV 358 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc-eeccee
Confidence 34567777763 2233 46789999999999988877654221 12335899999999999999999998 599999
Q ss_pred EEEEEe
Q 007742 394 LKVSSV 399 (591)
Q Consensus 394 l~v~~~ 399 (591)
|...|.
T Consensus 359 v~A~Fy 364 (378)
T KOG1996|consen 359 VSACFY 364 (378)
T ss_pred eeheec
Confidence 998875
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.35 E-value=0.00021 Score=68.80 Aligned_cols=83 Identities=27% Similarity=0.323 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g 391 (591)
...+|||.+||..+++.+|.++|.++|.|.. |.|.+++.|+.++|-|.|.|.+...|+.|+.-++++ .|.|
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk-df~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK-DFCG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc-cccC
Confidence 3579999999999999999999999987643 677788889999999999999999999999999997 7999
Q ss_pred eEEEEEEecCCC
Q 007742 392 RTLKVSSVTDHV 403 (591)
Q Consensus 392 ~~l~v~~~~~~~ 403 (591)
.+|+|..+....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998776544
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.32 E-value=0.00068 Score=47.46 Aligned_cols=52 Identities=25% Similarity=0.491 Sum_probs=42.3
Q ss_pred ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHH
Q 007742 499 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQ 562 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~ 562 (591)
+.|.|.+. +... .+.|..+|..||.|..+.++ ....++||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf--~~~~---------~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF--PPDL---------AEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE--CchH---------HHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 35778887 4332 57888899999999999988 34567899999999999985
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.25 E-value=0.00023 Score=69.72 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=54.4
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC------------------CCeeEEEEeCCHH
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------------------SAGFVYLRFESTE 556 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~------------------~~g~afV~F~~~e 556 (591)
..++++|++.|| |..-. .+.|.++|+.+|.|..|.|..+ .+-||+|+|.+.+
T Consensus 228 el~srtivaenL--P~Dh~--------~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~ 297 (484)
T KOG1855|consen 228 ELPSRTIVAENL--PLDHS--------YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVE 297 (484)
T ss_pred ccccceEEEecC--CcchH--------HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhH
Confidence 358899999999 76544 6899999999999999988543 1458999999999
Q ss_pred HHHHHHHHhcccc
Q 007742 557 AAASAQRAMHMRW 569 (591)
Q Consensus 557 ~A~~A~~~l~g~~ 569 (591)
.|.+|.+.|+...
T Consensus 298 ~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 298 AARKARELLNPEQ 310 (484)
T ss_pred HHHHHHHhhchhh
Confidence 9999999886444
No 168
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.22 E-value=0.00063 Score=55.38 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCC----eeeCCeEEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK----LEIVGRTLKVS 397 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~----~~~~g~~l~v~ 397 (591)
..|.|.+++..++-++|+++|..||.|..|.+.... ..|||.|.+.+.|+.|+..+... +.+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468899999999999999999999999999886432 36999999999999998877532 44566555554
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.16 E-value=0.00089 Score=63.44 Aligned_cols=80 Identities=16% Similarity=0.351 Sum_probs=62.8
Q ss_pred ceEEEcCCCCCCCHHHH------HHHhccCCCeeEEEEeccCCC-CCcccE--EEEEeCCHHHHHHHHHHhcCCeeeCCe
Q 007742 322 RKLYVGNLHFNMTETQL------RKLFEPFGPVELVQLPLDIET-GQCKGF--GFVQFAQLEHAKAAQSALNGKLEIVGR 392 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l------~~~f~~~g~i~~v~i~~~~~~-~~~~g~--a~Vef~~~~~a~~a~~~l~g~~~~~g~ 392 (591)
.-+||.+||+.+..+++ .+.|.+||.|..|.|.+.... +...+. +||.|.+.++|..||...+|.+ ++|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-LDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc-ccCc
Confidence 67899999988766652 378999999999888755422 122222 4999999999999999999984 9999
Q ss_pred EEEEEEecCC
Q 007742 393 TLKVSSVTDH 402 (591)
Q Consensus 393 ~l~v~~~~~~ 402 (591)
.|+..|.+.+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.05 E-value=0.0018 Score=61.40 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=61.3
Q ss_pred cceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCC------Ce--eEEEEeCCHHHHHHHHHHhcccc
Q 007742 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS------AG--FVYLRFESTEAAASAQRAMHMRW 569 (591)
Q Consensus 498 s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~------~g--~afV~F~~~e~A~~A~~~l~g~~ 569 (591)
.+.++|-+| +..+.+++....| .-.++|..||.|..|.|.+.. .+ -+||.|.+.++|..||....|..
T Consensus 114 KNLvYVigi--~pkva~Ee~~~vL--k~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 114 KNLVYVIGI--PPKVADEEVAPVL--KRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred cceeEEecC--CCCCCcccccccc--cchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 345788888 4444443332222 236899999999999885432 12 24999999999999999999999
Q ss_pred cCCeEEEEEEeCch
Q 007742 570 FARRLISAIFMKPE 583 (591)
Q Consensus 570 ~~g~~l~v~~~~~~ 583 (591)
++|+.|.+.|-+.+
T Consensus 190 ~DGr~lkatYGTTK 203 (480)
T COG5175 190 LDGRVLKATYGTTK 203 (480)
T ss_pred ccCceEeeecCchH
Confidence 99999999996654
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.92 E-value=0.00039 Score=63.88 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=52.8
Q ss_pred HHHHHHhc-cCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 336 TQLRKLFE-PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 336 ~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
++|...|+ +||+|+.+.|-.+. .....|-+||+|...++|++|++.||+.| |.|++|...++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw-~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRW-YNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCcc-ccCCcceeeecCcC
Confidence 45555555 89999988665443 55678999999999999999999999995 99999999876533
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0018 Score=65.73 Aligned_cols=81 Identities=31% Similarity=0.383 Sum_probs=64.0
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEE
Q 007742 321 DRKLYVGNLHFNM------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394 (591)
Q Consensus 321 ~~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l 394 (591)
..+|+|.|+|.-- -...|..+|+++|+|..+.++.+.. |..+||+|++|.+..+|..|++.|||.-......+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3789999998532 1235678999999999999988874 44899999999999999999999999633456777
Q ss_pred EEEEecCC
Q 007742 395 KVSSVTDH 402 (591)
Q Consensus 395 ~v~~~~~~ 402 (591)
.|...++-
T Consensus 137 ~v~~f~d~ 144 (698)
T KOG2314|consen 137 FVRLFKDF 144 (698)
T ss_pred EeehhhhH
Confidence 77765543
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.91 E-value=0.00083 Score=63.94 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEecc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAG--KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKP 295 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~ 295 (591)
....+||+||-|.+|++||.+.+...| .|.+++++-+..+|.++|||+|...+...+...|+ |....|.|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 346789999999999999999998776 57888899999999999999999999888888885 667778887666644
Q ss_pred C
Q 007742 296 S 296 (591)
Q Consensus 296 ~ 296 (591)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.77 E-value=0.0046 Score=52.49 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=52.1
Q ss_pred CcEEEEeCCCC------CCCH---HHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCee
Q 007742 220 QRTVFAYQMPL------KATE---RDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQP 290 (591)
Q Consensus 220 ~~~l~V~nLp~------~~te---~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~ 290 (591)
-.+|.|.=+.+ ...+ .+|.+.|..||.++-|+++- +.-+|+|.+-+.|.+|+.++|..+.|+.
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSLDGIQVNGRT 98 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHGCCSEETTEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHccCCcEECCEE
Confidence 35666665541 2222 36778899999999998884 3589999999999999999999999999
Q ss_pred EEeccCcccc
Q 007742 291 VMVKPSEAEK 300 (591)
Q Consensus 291 i~v~~~~~~~ 300 (591)
|.|....+.+
T Consensus 99 l~i~LKtpdW 108 (146)
T PF08952_consen 99 LKIRLKTPDW 108 (146)
T ss_dssp EEEEE-----
T ss_pred EEEEeCCccH
Confidence 9997665544
No 175
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.71 E-value=0.0039 Score=43.63 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=41.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 279 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al 279 (591)
+.|-|.|.|+...+ .+..+|..||.|..+.+.. ..-+.||.|.+..+|..||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56888898877654 4556899999999988762 2448999999999999985
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.0038 Score=57.37 Aligned_cols=100 Identities=27% Similarity=0.361 Sum_probs=80.0
Q ss_pred HHHHH-HHcCCccCCeeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEE
Q 007742 275 VPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 353 (591)
Q Consensus 275 A~~Al-~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i 353 (591)
|..|- +|++....|+.+.|.++.. ..|+|.||...+..+.+.+.|+.||+|....+
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~ 63 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVA 63 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-----------------------ceEEEEecchhhhhHHHHHhhhhcCccchhee
Confidence 44555 6999999999999988753 57999999999999999999999999988777
Q ss_pred eccCCCCCcccEEEEEeCCHHHHHHHHHHhcCC---eeeCCeEEEEEE
Q 007742 354 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK---LEIVGRTLKVSS 398 (591)
Q Consensus 354 ~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~---~~~~g~~l~v~~ 398 (591)
..+. .+...+-++|+|...-.|.+|+..+.-. +...+.++.|..
T Consensus 64 ~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 64 KVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred eecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6664 6778889999999999999999887432 223345555543
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.42 E-value=0.0018 Score=59.47 Aligned_cols=72 Identities=26% Similarity=0.382 Sum_probs=59.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCC--------CCc----ccEEEEEeCCHHHHHHHHHHhcCCeee
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET--------GQC----KGFGFVQFAQLEHAKAAQSALNGKLEI 389 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~--------~~~----~g~a~Vef~~~~~a~~a~~~l~g~~~~ 389 (591)
-.|||.+||+.+...-|+++|+.||.|-.|.+-....+ +.. -.-|+|||.+...|..+...|||. .|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~-~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT-PI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC-cc
Confidence 48999999999999999999999999999988755433 111 235799999999999999999997 58
Q ss_pred CCeEE
Q 007742 390 VGRTL 394 (591)
Q Consensus 390 ~g~~l 394 (591)
+|+.-
T Consensus 154 ggkk~ 158 (278)
T KOG3152|consen 154 GGKKK 158 (278)
T ss_pred CCCCC
Confidence 88753
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.32 E-value=0.0044 Score=61.06 Aligned_cols=67 Identities=21% Similarity=0.357 Sum_probs=56.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeec---CCC--CC--------ccceEEEEecCcchHHHHHHHc
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD---RNS--RR--------SKGVGYIEFYDVMSVPMAIALS 282 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d---~~~--g~--------~~G~afV~F~~~e~A~~Al~l~ 282 (591)
++-++++|.+.|||.+-..+.|.++|..+|.|..|+|+.- ... +. .+-+|||+|...+.|.+|.+++
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999989999999999999999999875 221 11 1568999999999999999754
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.27 E-value=0.0039 Score=57.30 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=59.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC--------CCccc----eEEEEecCcchHHHHH-HHcCCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS--------RRSKG----VGYIEFYDVMSVPMAI-ALSGQL 285 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~--------g~~~G----~afV~F~~~e~A~~Al-~l~g~~ 285 (591)
....||+++||+.+...-|+++|..||.|--|.|.....+ |...+ -|.|+|.+...|.... .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4478999999999999999999999999999998876554 33333 3569999999998777 699999
Q ss_pred cCCee
Q 007742 286 LLGQP 290 (591)
Q Consensus 286 i~g~~ 290 (591)
|+|..
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.18 E-value=0.015 Score=46.57 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=51.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-------CCCCccceEEEEecCcchHHHHHHHcCCccCCeeEE
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR-------NSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVM 292 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~-------~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~ 292 (591)
.+.|.|-+.|+. ....|...|++||.|+...-+... ........-.|.|.+..+|.+||..||..|.|.-|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467889999887 456788999999999876411000 001234588999999999999999999999886554
Q ss_pred -eccC
Q 007742 293 -VKPS 296 (591)
Q Consensus 293 -v~~~ 296 (591)
|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 5555
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.74 E-value=0.059 Score=40.82 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=41.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g 385 (591)
..||--.+|..+...||.++|++||.|. |..+.+. -|||.+.+.+.|..|+..+.-
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3455445999999999999999999985 5554442 599999999999999977763
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.68 E-value=0.046 Score=45.75 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEE
Q 007742 522 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIF 579 (591)
Q Consensus 522 ~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~ 579 (591)
...|...++.||.|.+|.+- ++-.|.|.|.+..+|.+|+.+++. ..-|..+.++|
T Consensus 104 l~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 104 LKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred HHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 35667777899999999876 456789999999999999999876 66788888887
No 183
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.11 E-value=0.06 Score=50.84 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=52.3
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEE-EEE
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI-SAI 578 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l-~v~ 578 (591)
-|.|.++ |... ..-|..+|.+||.|+..... ..-.+.+|.|.+.-+|++||.+ ||+.|+|..+ -|.
T Consensus 199 WVTVfGF--ppg~---------~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 199 WVTVFGF--PPGQ---------VSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVK 265 (350)
T ss_pred eEEEecc--Cccc---------hhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeee
Confidence 3677777 4433 35789999999999988766 3344679999999999999995 9999998874 344
Q ss_pred E
Q 007742 579 F 579 (591)
Q Consensus 579 ~ 579 (591)
-
T Consensus 266 p 266 (350)
T KOG4285|consen 266 P 266 (350)
T ss_pred e
Confidence 4
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.95 E-value=0.029 Score=57.81 Aligned_cols=77 Identities=26% Similarity=0.227 Sum_probs=59.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee--CCeEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEP-FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI--VGRTL 394 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~--~g~~l 394 (591)
..++..|+|.||--.+|.-+|++++.. .|.|...+| ++ -+..|||.|.+.++|.....+|||-.+- +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 445789999999999999999999994 556655533 22 3557999999999999999999994222 35778
Q ss_pred EEEEec
Q 007742 395 KVSSVT 400 (591)
Q Consensus 395 ~v~~~~ 400 (591)
.|.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 887764
No 185
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=94.66 E-value=0.02 Score=42.92 Aligned_cols=69 Identities=46% Similarity=0.617 Sum_probs=15.7
Q ss_pred CCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCC
Q 007742 417 DDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGS 496 (591)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (591)
..+.+|..++..++.+++.++..............+. + . ....+....
T Consensus 5 d~d~~G~~l~a~sR~~LM~KLA~~~~~~~~~~~~~~~---------------~--------~---------~~~~~~~~~ 52 (73)
T PF15519_consen 5 DDDRGGVNLNATSRAALMAKLARGDGPQIPPAAQQAL---------------Q--------P---------NGSIPIPPI 52 (73)
T ss_dssp ------------------------------------------------------------------------------S-
T ss_pred ccccccccccccccccccccccccccccccccccccc---------------C--------c---------CCCCCCCCC
Confidence 4456778889999999999998854211111000000 0 0 000011137
Q ss_pred CcceEEEeccCCCCCCCCchh
Q 007742 497 PSECLLLKNMFDPAMETDPDF 517 (591)
Q Consensus 497 ~s~~l~v~Nl~~p~~~~~~~~ 517 (591)
++.||+|+|+|+|...++++|
T Consensus 53 aS~C~lLkNMFDP~~Ete~~W 73 (73)
T PF15519_consen 53 ASRCFLLKNMFDPAEETEPDW 73 (73)
T ss_dssp --SEEEEESSS-TTCGGSTTH
T ss_pred CCceeeeecCCCcccccCCCC
Confidence 889999999999998876554
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.65 E-value=0.045 Score=55.92 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=55.0
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhcc--ccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccc--ccC
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK--YGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR--WFA 571 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~--~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~--~~~ 571 (591)
...++|+|.-| |.++- +++|+.+|.. +-.+++|.+.-+ ..+||.|++..+|+.|++.|.-. .|.
T Consensus 173 ~kRcIvilREI--pettp--------~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 173 HKRCIVILREI--PETTP--------IEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred cceeEEEEeec--CCCCh--------HHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHHHHHHHHHHHHhhc
Confidence 44567889999 88776 8999999975 667777776532 24799999999999999998644 377
Q ss_pred CeEEEEEE
Q 007742 572 RRLISAIF 579 (591)
Q Consensus 572 g~~l~v~~ 579 (591)
|+.|....
T Consensus 241 gKpImARI 248 (684)
T KOG2591|consen 241 GKPIMARI 248 (684)
T ss_pred Ccchhhhh
Confidence 77775543
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.37 E-value=0.42 Score=39.10 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=54.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC---CeEEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV---GRTLKVS 397 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~---g~~l~v~ 397 (591)
..+++...|..++.++|..+.+.+- .|..++|+++. ...+..++++|.+.+.|......+||+ .|. ....+|.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk-~FnslEpE~Chvv 90 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGK-PFNSLEPETCHVV 90 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCC-ccCCCCCceeEEE
Confidence 5566666666677777877777765 67788888864 235778899999999999999999996 344 3344444
Q ss_pred Ee
Q 007742 398 SV 399 (591)
Q Consensus 398 ~~ 399 (591)
+.
T Consensus 91 fV 92 (110)
T PF07576_consen 91 FV 92 (110)
T ss_pred EE
Confidence 43
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.35 E-value=0.1 Score=47.14 Aligned_cols=60 Identities=27% Similarity=0.300 Sum_probs=45.7
Q ss_pred HHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc--ccccCCeEEEEEEeCc
Q 007742 522 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH--MRWFARRLISAIFMKP 582 (591)
Q Consensus 522 ~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~--g~~~~g~~l~v~~~~~ 582 (591)
...|..+|..|+.+..+.+.+ +-+-+.|.|.+.+.|..|...|+ +..|.|..|.|.|+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 678999999999888776553 45567999999999999999999 9999999999999843
No 189
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.35 E-value=0.18 Score=36.86 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=43.6
Q ss_pred HHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEE
Q 007742 522 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISA 577 (591)
Q Consensus 522 ~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v 577 (591)
.++|+..+.+|+... |..+.+|+ ||.|.+..+|.++....+|+.+.+..|.+
T Consensus 14 v~d~K~~Lr~y~~~~---I~~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRLRKYRWDR---IRDDRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHHhcCCcce---EEecCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 689999999997433 23456886 99999999999999999999999888765
No 190
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.19 E-value=0.024 Score=56.85 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCCCcEEEEeCCCCCC-CHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKA-TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~-te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~ 295 (591)
..+.+.|-+.-.|+.+ |-.+|..+|.+||.|..|.+-.. .-.|.|+|.+.-+|-.|...++..|.++.|+|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEE
Confidence 3455777777788877 67899999999999999988654 3369999999999999999999999999999999
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
.++.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8653
No 191
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.98 E-value=0.15 Score=47.16 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=47.0
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEE----ecCCCeeEEEEeCCHHHHHHHHHHhcccc
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV----DKRSAGFVYLRFESTEAAASAQRAMHMRW 569 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l----~~~~~g~afV~F~~~e~A~~A~~~l~g~~ 569 (591)
.|+|.|| ...+. .+.|...|+.||.|....+ ...+.+-++|+|...-.|.+|+...+-.-
T Consensus 33 ~l~V~nl--~~~~s--------ndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 33 ELYVVNL--MQGAS--------NDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred eEEEEec--chhhh--------hHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCc
Confidence 5999999 55555 6889999999999876544 23467788999999999999998774333
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.60 E-value=0.31 Score=35.02 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC---CCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPF---GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~---g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l 383 (591)
..|+|.++. .++.++|+..|..| .....|..+-+. -|-|.|.+.+.|..||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 679999996 58889999999998 234567777664 4899999999999999764
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.43 E-value=0.18 Score=42.25 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=52.5
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 322 RKLYVGNL----HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 322 ~~l~v~nl----~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
.+|.|.=| .+.-+...|...++.||+|.+|.+. ++-.|.|.|.+..+|-+|+.+++.. .-|..+...
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~--~pgtm~qCs 157 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSR--APGTMFQCS 157 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCC--CCCceEEee
Confidence 46666544 4444445677788999999999773 2335999999999999999999984 678888877
Q ss_pred Ee
Q 007742 398 SV 399 (591)
Q Consensus 398 ~~ 399 (591)
+-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 64
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.32 E-value=0.14 Score=46.04 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=45.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcc-CCCe---eEEE--EeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEP-FGPV---ELVQ--LPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 390 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~-~g~i---~~v~--i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~ 390 (591)
..|.|++||+.+|++++.+.+.+ ++.. ..+. ..........-.-|||.|.+.+++...+..++|...++
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 68999999999999999998887 6654 2332 11111112234569999999999999999999964333
No 195
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.98 E-value=0.027 Score=59.01 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEe
Q 007742 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293 (591)
Q Consensus 215 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v 293 (591)
.+-.+..++||+|+-..+..+-++.++..+|.|.++..+. |||..|..+..+..|+ .++...+.|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445678999999999999999999999999988765442 9999999999999999 57777788888877
Q ss_pred ccCccccccccccCCCC---CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC
Q 007742 294 KPSEAEKNLVQSNTSAG---GTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG 346 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 346 (591)
..-...-.......... .....+.. .-+.++|.|+|..+.+......|.-.+
T Consensus 106 ~~d~q~~~n~~k~~~~~~~~~~~f~p~~-srr~e~i~~k~~~l~~~~~~~~~~is~ 160 (668)
T KOG2253|consen 106 NVDEQTIENADKEKSIANKESHKFVPSS-SRRQESIQNKPLSLDEQIHKKSLQISS 160 (668)
T ss_pred cchhhhhcCccccccchhhhhcccCCch-hHHHHHhhccccchhHHHHHHHHhccc
Confidence 54311000000000000 00001110 035667777777666665555555433
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.67 E-value=0.59 Score=35.57 Aligned_cols=53 Identities=11% Similarity=0.278 Sum_probs=39.8
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
+.+|. + |.+.. ..||.++|+.||.|.--.|. ...|||...+.+.|..|+..+.
T Consensus 11 VFhlt-F--PkeWK--------~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-F--PKEWK--------TSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE-----TT----------HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-C--chHhh--------hhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 34444 6 77665 78999999999988766665 4578999999999999988775
No 197
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.66 E-value=0.19 Score=54.30 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=54.7
Q ss_pred HHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccccc--CCeEEEEEEeCchhhh
Q 007742 522 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF--ARRLISAIFMKPEDYE 586 (591)
Q Consensus 522 ~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~--~g~~l~v~~~~~~~~~ 586 (591)
-.-|..+|++||.|.++...++ -..|.|+|.+.+.|..|+.+|+|+.+ -|-+.+|.|++...+.
T Consensus 312 SssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 312 SSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred HHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 4578999999999999987543 45789999999999999999999984 7889999998876654
No 198
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=92.52 E-value=0.066 Score=54.98 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=4.4
Q ss_pred EeccCCCCCCC
Q 007742 503 LKNMFDPAMET 513 (591)
Q Consensus 503 v~Nl~~p~~~~ 513 (591)
-+-|..|-.++
T Consensus 630 tGkIlFpG~TN 640 (752)
T KOG0670|consen 630 TGKILFPGRTN 640 (752)
T ss_pred ccceecCCCCc
Confidence 33343344443
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.04 E-value=0.17 Score=45.66 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhc-CCCe---eEEEEeecCCC--CCccceEEEEecCcchHHHHH-HHcCCccC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSK-AGKV---RDVRLIMDRNS--RRSKGVGYIEFYDVMSVPMAI-ALSGQLLL 287 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~-~G~i---~~v~~~~d~~~--g~~~G~afV~F~~~e~A~~Al-~l~g~~i~ 287 (591)
...+|.|++||+.+|++++.+.+.. ++.. ..+.-.....+ ...-.-|||.|.+.+++...+ .++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4579999999999999999887776 5544 33332222111 112356899999999988888 58887653
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.66 E-value=0.1 Score=52.42 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=52.5
Q ss_pred HHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCc
Q 007742 522 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKP 582 (591)
Q Consensus 522 ~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~ 582 (591)
..+|..+|..||.|..|.+.-. .-.|.|+|.+.-+|-.|.+ .++-.|+|+-|+|.|.++
T Consensus 387 ~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 387 IADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred HhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 6899999999999999988644 4568999999999988887 699999999999999887
No 201
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.41 E-value=0.28 Score=51.75 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=56.9
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
-++..++||+|+ ..... .+-++.+...+|.|.+..... |+|+.|..+..+..|+..|+-..++|..
T Consensus 37 ~~~~~~vfv~~~--~~~~s--------~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 37 LPPRDTVFVGNI--SYLVS--------QEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCCceeEecch--hhhhh--------HHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 456678999999 44433 567888889999998886553 8999999999999999999988898888
Q ss_pred EEEE
Q 007742 575 ISAI 578 (591)
Q Consensus 575 l~v~ 578 (591)
+.+.
T Consensus 103 l~~~ 106 (668)
T KOG2253|consen 103 LIEN 106 (668)
T ss_pred hhcc
Confidence 7654
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.77 E-value=0.49 Score=51.29 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=59.3
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-eeeCCeEEEEEEecCC
Q 007742 324 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKVSSVTDH 402 (591)
Q Consensus 324 l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~-~~~~g~~l~v~~~~~~ 402 (591)
.++.|.+...+-..|..+|..||.|.+++..++. ..|.|+|.+++.|..|+.+|+|+ +..-|.+.+|.+++..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3344445566778899999999999999887664 36999999999999999999996 4466888999988654
Q ss_pred C
Q 007742 403 V 403 (591)
Q Consensus 403 ~ 403 (591)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.55 E-value=0.75 Score=46.30 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g 391 (591)
+..|+|-.+|..++..||..++..+- .|..|.|+++. ...+-.++|+|.+.++|..+.+.+||. .|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk-~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGK-QFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCC-cCCC
Confidence 47899999999999999999999876 68899999853 234567899999999999999999996 4543
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.22 E-value=1.7 Score=43.83 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=57.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG 288 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~-G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g 288 (591)
+..|.|-.+|..+|.-||..|+..| -.|.+|++++|.- ..+-..+|.|.+..+|.... ++||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998876 4688999999653 35567899999999999999 799998864
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.84 E-value=1 Score=43.88 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=62.1
Q ss_pred ceEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeccCC--C-CCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEE
Q 007742 322 RKLYVGNLHFNMTETQLR---KLFEPFGPVELVQLPLDIE--T-GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~---~~f~~~g~i~~v~i~~~~~--~-~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~ 395 (591)
.-+||.+|+..+..+.+. +.|..||.|..|.+..+.. . .....-+||.|...++|..||...+|. .++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~-~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF-VDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH-HhhhhhhH
Confidence 567788888776655555 4788889999998887652 1 112334899999999999999999995 69999988
Q ss_pred EEEecCCCC
Q 007742 396 VSSVTDHVG 404 (591)
Q Consensus 396 v~~~~~~~~ 404 (591)
+.+.+....
T Consensus 157 a~~gttkyc 165 (327)
T KOG2068|consen 157 ASLGTTKYC 165 (327)
T ss_pred HhhCCCcch
Confidence 887765543
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.53 E-value=1.3 Score=42.13 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=55.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC-eEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-RTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g-~~l~v~~~ 399 (591)
..-|.|.++|+.. ..-|..+|+.||.|....... ...+.+|.|.+..+|.+|| ..+|++ |+| ..|-|..|
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KAL-skng~i-i~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKAL-SKNGTI-IDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhh-hhcCee-eccceEEeeeec
Confidence 4677788888653 456889999999997776542 2458999999999999999 788874 766 45566777
Q ss_pred cCC
Q 007742 400 TDH 402 (591)
Q Consensus 400 ~~~ 402 (591)
+++
T Consensus 268 tDk 270 (350)
T KOG4285|consen 268 TDK 270 (350)
T ss_pred CCH
Confidence 664
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.95 E-value=0.86 Score=47.04 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=54.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-eeeCCeEEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEP--FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKVS 397 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~--~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~-~~~~g~~l~v~ 397 (591)
+.|+|+-||..+..++|+.+|.. +-++.+|.+-.+. -=||+|.+..+|+.|.+.|... -.|.|++|...
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 57778999999999999999987 4567677665432 2699999999999999888752 25888888654
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.91 E-value=4 Score=33.46 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred CcEEEEeCC-CCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC
Q 007742 220 QRTVFAYQM-PLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG 288 (591)
Q Consensus 220 ~~~l~V~nL-p~~~te~~l~~~f~~~-G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g 288 (591)
...+.+-.. |+.++-++|..+...+ ..|..++|+++.. ..+-.+.+.|.+.+.|..+. ..||+.+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444444 4445556666555555 4577888888754 46778999999999999999 699988753
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.47 E-value=1.4 Score=39.84 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=44.8
Q ss_pred CHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhc--CCeeeCCeEEEEEEec
Q 007742 334 TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN--GKLEIVGRTLKVSSVT 400 (591)
Q Consensus 334 ~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~--g~~~~~g~~l~v~~~~ 400 (591)
....|.++|..++.+..+..+.. -+-+.|.|.+.+.|..|...|+ +. .|.|..+.+.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~-~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGT-SFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TS-EETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccccc-ccCCCceEEEEcc
Confidence 45789999999998887776643 3459999999999999999999 86 6999999999874
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.37 E-value=0.34 Score=37.67 Aligned_cols=72 Identities=21% Similarity=0.107 Sum_probs=45.4
Q ss_pred EEEEecCcchHHHHHHHcC--CccCCeeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHh
Q 007742 265 GYIEFYDVMSVPMAIALSG--QLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLF 342 (591)
Q Consensus 265 afV~F~~~e~A~~Al~l~g--~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 342 (591)
|+|+|...+-|+.-+.+.. ..+.+..+.|............-. .......++|.|.|||..+.++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-------v~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-------VFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-------EEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999998886543 346666666654332221111100 0112224899999999999999888755
Q ss_pred c
Q 007742 343 E 343 (591)
Q Consensus 343 ~ 343 (591)
+
T Consensus 74 e 74 (88)
T PF07292_consen 74 E 74 (88)
T ss_pred E
Confidence 4
No 211
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.92 E-value=4.2 Score=29.32 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=37.5
Q ss_pred ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccc----cceEEEEEecCCCeeEEEEeCCHHHHHHHHHHh
Q 007742 499 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY----GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAM 565 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~----G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l 565 (591)
..|.|.++. . ++ .++|+.+|..| + ...|.-.. ...|-|.|.+.+.|..|+.+|
T Consensus 6 eavhirGvd--~-ls--------T~dI~~y~~~y~~~~~-~~~IEWId--DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD--E-LS--------TDDIKAYFSEYFDEEG-PFRIEWID--DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC--C-CC--------HHHHHHHHHHhcccCC-CceEEEec--CCcEEEEECCHHHHHHHHHcC
Confidence 358999982 2 22 57999999988 3 33443322 235689999999999999865
No 212
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=86.67 E-value=0.88 Score=47.17 Aligned_cols=9 Identities=44% Similarity=0.379 Sum_probs=4.4
Q ss_pred hhhHHhHHH
Q 007742 7 EYLEKTVEE 15 (591)
Q Consensus 7 ~~~~~~~~~ 15 (591)
|-|.++.+.
T Consensus 554 Erl~~aveA 562 (757)
T KOG4368|consen 554 ERLLAAVEA 562 (757)
T ss_pred HHHHHHHHH
Confidence 344455554
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.65 E-value=3.6 Score=42.96 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=63.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccC----CCeeEEEEeccC----------CCCC---------------------
Q 007742 318 GAIDRKLYVGNLHFN-MTETQLRKLFEPF----GPVELVQLPLDI----------ETGQ--------------------- 361 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----g~i~~v~i~~~~----------~~~~--------------------- 361 (591)
+..++.|-|.||.+. +...+|+-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445689999999975 7788999888765 578888776321 0111
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhcCCeeeC--CeEEEEEEecCCCC
Q 007742 362 ----------------CKGFGFVQFAQLEHAKAAQSALNGKLEIV--GRTLKVSSVTDHVG 404 (591)
Q Consensus 362 ----------------~~g~a~Vef~~~~~a~~a~~~l~g~~~~~--g~~l~v~~~~~~~~ 404 (591)
...||.|+|.+++.|......|+| ++|. |..|-+.|..+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG-~EfEsS~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDG-IEFESSANKLDLRFIPDDMT 310 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCc-ceeccccceeeeeecCCCCc
Confidence 124899999999999999999999 4676 56777778776654
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.38 E-value=0.48 Score=46.01 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=47.2
Q ss_pred HHHhccccceEEEEEecCC--------CeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 526 EEECSKYGRVKHIYVDKRS--------AGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 526 ~~~f~~~G~V~~v~l~~~~--------~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
.+.|..||.|..|.+.... ...+||.|...++|..||...+|..++|+.|.+.|.+.+
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 4678899999999774321 234799999999999999999999999999888775543
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.89 E-value=6.7 Score=41.09 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=61.9
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccc----cceEEEEEec---------------C-----------
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY----GRVKHIYVDK---------------R----------- 543 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~----G~V~~v~l~~---------------~----------- 543 (591)
.+.+++.|.|.|| -|..-. .+||+-+|..| |.|.+|.|-+ +
T Consensus 170 ~~~~T~RLAVvNM--DWd~v~-------AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~ 240 (650)
T KOG2318|consen 170 LGEETKRLAVVNM--DWDRVK-------AKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEY 240 (650)
T ss_pred cccccceeeEecc--cccccc-------HHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccC
Confidence 4667888999999 553322 67888888765 6899987721 1
Q ss_pred --C------------------------CeeEEEEeCCHHHHHHHHHHhcccccC--CeEEEEEEeCch
Q 007742 544 --S------------------------AGFVYLRFESTEAAASAQRAMHMRWFA--RRLISAIFMKPE 583 (591)
Q Consensus 544 --~------------------------~g~afV~F~~~e~A~~A~~~l~g~~~~--g~~l~v~~~~~~ 583 (591)
+ --||+|+|.+++.|.+.+..-.|..|. |..|-+.|++..
T Consensus 241 ~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 241 KESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred cccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 0 127899999999999999999999984 777888887754
No 216
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.74 E-value=66 Score=31.12 Aligned_cols=166 Identities=14% Similarity=0.105 Sum_probs=98.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-------CCCCccceEEEEecCcchHHHHH-H----Hc--CC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR-------NSRRSKGVGYIEFYDVMSVPMAI-A----LS--GQ 284 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~-------~~g~~~G~afV~F~~~e~A~~Al-~----l~--g~ 284 (591)
..+.|.+.|+...++--.+...|.+||+|++|.++.+. ..........+-|-+.+.+.... . ++ .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999888888899999999999999865 11123457788998888776553 1 22 23
Q ss_pred ccCCeeEEeccCcc--cc----ccccccC----CCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHH----HhccCC----
Q 007742 285 LLLGQPVMVKPSEA--EK----NLVQSNT----SAGGTATGPYGAIDRKLYVGNLHFNMTETQLRK----LFEPFG---- 346 (591)
Q Consensus 285 ~i~g~~i~v~~~~~--~~----~~~~~~~----~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~----~f~~~g---- 346 (591)
.+....|.+....- .. ....... ...-.........++.|+|. +...+..+++.. ++..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceE
Confidence 34555555543221 00 0000000 00001111222335788874 334454444332 333333
Q ss_pred CeeEEEEeccCC--CCCcccEEEEEeCCHHHHHHHHHHhcC
Q 007742 347 PVELVQLPLDIE--TGQCKGFGFVQFAQLEHAKAAQSALNG 385 (591)
Q Consensus 347 ~i~~v~i~~~~~--~~~~~g~a~Vef~~~~~a~~a~~~l~g 385 (591)
.|+.|.++.... ...++.||.+.|-+..-|...+..|..
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 367777764432 234678999999999999988877663
No 217
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=78.07 E-value=1.7 Score=45.72 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=4.0
Q ss_pred EEeCCCCCCC
Q 007742 224 FAYQMPLKAT 233 (591)
Q Consensus 224 ~V~nLp~~~t 233 (591)
|+.|-|..+.
T Consensus 849 ~~q~~~~qvs 858 (878)
T KOG1847|consen 849 YLQNEPSQVS 858 (878)
T ss_pred ccccchhhhH
Confidence 3344444443
No 218
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.69 E-value=6.2 Score=30.78 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=25.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 366 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 366 a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
|+|+|....-|.+.++.-.-.+.++++.+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999998655545777787776653
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.37 E-value=13 Score=28.00 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHhccCC-----CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 331 FNMTETQLRKLFEPFG-----PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 331 ~~~~~~~l~~~f~~~g-----~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++..+|..++...+ .|-.|.|.. .|+||+.... .|..++..|++. .+.|++|.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~-~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGK-KIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT---SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCC-CCCCeeEEEEEC
Confidence 3578888888887764 356677753 3799998864 788889999995 799999998753
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=74.91 E-value=4.5 Score=35.42 Aligned_cols=120 Identities=9% Similarity=-0.023 Sum_probs=76.1
Q ss_pred cEEEEeCCC--CCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCc
Q 007742 221 RTVFAYQMP--LKATERDVYEFFSK-AGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 221 ~~l~V~nLp--~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~ 297 (591)
....|+.+. ..++-..|...+.. ++....+.+.. -..++..+.|.+.+++..++......+.|..+.+..-.
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 344455542 23556666665544 23322333322 13578999999999999998877777888888876554
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEec
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPL 355 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~v~i~~ 355 (591)
+......... ....--|.|.|||.. .+++-|..+.+.+|.+..+....
T Consensus 91 ~~~~~~~~~~----------~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 91 PDFNPSEVKF----------EHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccccccccce----------eccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 3222111100 011246788999976 68888999999999998887653
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.96 E-value=17 Score=27.29 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=31.6
Q ss_pred HHHHHHHhccccce-----EEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEe
Q 007742 522 QGDVEEECSKYGRV-----KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFM 580 (591)
Q Consensus 522 ~edl~~~f~~~G~V-----~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~ 580 (591)
..+|..++...+.| -.|.|. ..++||+-.. +.|..++..|++..+.|+.|.|..+
T Consensus 15 ~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 15 PRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45666666655444 455555 4477888876 4688899999999999999999764
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.20 E-value=22 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=41.6
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 332 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 332 ~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
.++..+|+..+..|+-.. | ..+. .| -||.|.+..+|.+|....+|. .+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I--~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~-~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-I--RDDR-----TG-FYIVFNDSKEAERCFRAEDGT-LFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-E--EecC-----CE-EEEEECChHHHHHHHHhcCCC-EEEEEEEEe
Confidence 478899999999997442 2 2332 33 599999999999999999997 466665543
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.41 E-value=2.6 Score=39.54 Aligned_cols=65 Identities=31% Similarity=0.542 Sum_probs=42.4
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHhccCCCeeEEEEeccC-----CCCCc-----ccE---------EEEE
Q 007742 321 DRKLYVGNLHFN------------MTETQLRKLFEPFGPVELVQLPLDI-----ETGQC-----KGF---------GFVQ 369 (591)
Q Consensus 321 ~~~l~v~nl~~~------------~~~~~l~~~f~~~g~i~~v~i~~~~-----~~~~~-----~g~---------a~Ve 369 (591)
+.+|++.+||-. .+++-|...|+.||.|..|.|+.-. -+|.. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 478888888743 3567899999999999888776321 12222 222 3556
Q ss_pred eCCHHHHHHHHHHhcC
Q 007742 370 FAQLEHAKAAQSALNG 385 (591)
Q Consensus 370 f~~~~~a~~a~~~l~g 385 (591)
|.....-..||.+|.|
T Consensus 229 fmeykgfa~amdalr~ 244 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRG 244 (445)
T ss_pred HHHHHhHHHHHHHHhc
Confidence 6555555667777766
No 224
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.93 E-value=8.3 Score=34.15 Aligned_cols=58 Identities=22% Similarity=0.211 Sum_probs=41.8
Q ss_pred HHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCe-EEEEEEeC
Q 007742 523 GDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFMK 581 (591)
Q Consensus 523 edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~-~l~v~~~~ 581 (591)
.....+|..|.....+.+. .+.+...|-|.+++.|..|...+++..|.|+ .+.+.|+.
T Consensus 30 ~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred HHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 3455566666555544333 2567789999999999999999999999999 45554443
No 225
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=57.84 E-value=56 Score=26.57 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=59.1
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCc--cCCeeEEeccCccccccc
Q 007742 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQL--LLGQPVMVKPSEAEKNLV 303 (591)
Q Consensus 227 nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~--i~g~~i~v~~~~~~~~~~ 303 (591)
=||+.++ .|.+.|+.-|+|.+|..+..- . -. .|+ .++|.. +.|. |.|........ .
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtqy-------------p-dn---dal~~~~G~lE~vDg~-i~IGs~q~~~s-V 68 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQY-------------P-DN---DALLYVHGTLEQVDGN-IRIGSGQTPAS-V 68 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEecc-------------C-Cc---hhhheeeeehhhccCc-EEEccCCCccc-E
Confidence 3677665 789999999999998665321 1 11 133 455543 4444 44432211100 0
Q ss_pred cccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcc---CCCeeEEEEeccCCCCCcccEEEEEeCCH
Q 007742 304 QSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEP---FGPVELVQLPLDIETGQCKGFGFVQFAQL 373 (591)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~---~g~i~~v~i~~~~~~~~~~g~a~Vef~~~ 373 (591)
.... .|....+ .--|+.+|-.+++++|.. |-.|..-.+..+.....+-..||.-|...
T Consensus 69 ~i~g----------TPsgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 69 RIQG----------TPSGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EEec----------CCCCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0000 0000111 124678899999999986 33333333333322223345788888764
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=52.87 E-value=45 Score=31.76 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeccCCCCCcccEEEEEeCCHH
Q 007742 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLE 374 (591)
Q Consensus 317 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-~~v~i~~~~~~~~~~g~a~Vef~~~~ 374 (591)
..+...-|+|+||+-++...+|+..+.+.+-+ ..+.+. | ..|-||+.|.+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCcc
Confidence 33445779999999999999999999988743 333331 1 2567999998753
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=50.83 E-value=40 Score=32.48 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCC-------CCCcccEEEEEeCCHHHHHHH----HHHhcC-C
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-------TGQCKGFGFVQFAQLEHAKAA----QSALNG-K 386 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~-------~~~~~g~a~Vef~~~~~a~~a----~~~l~g-~ 386 (591)
..++.|++.|+...++-..+...|-+||+|++|.++.+.. .......+.+-|-+.+.+... ++.|.. +
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999987641 122345688899888776643 233332 0
Q ss_pred eeeCCeEEEEEEec
Q 007742 387 LEIVGRTLKVSSVT 400 (591)
Q Consensus 387 ~~~~g~~l~v~~~~ 400 (591)
-.+.-..|.+.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 13567778887764
No 228
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=48.86 E-value=27 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=27.1
Q ss_pred ceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc
Q 007742 534 RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW 569 (591)
Q Consensus 534 ~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~ 569 (591)
.|.++..+..-+|+.|||=.+..+...|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 677888888899999999999999999988766544
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.37 E-value=37 Score=34.01 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=43.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~ 382 (591)
...|-|.++|.....++|...|+.|+. --.|.++-+. .||..|.++..|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 478889999999888899999999874 3345554433 699999999999999944
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.20 E-value=24 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=31.9
Q ss_pred cEEEEeCCCCC---------CCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcch-HHHHHHHc
Q 007742 221 RTVFAYQMPLK---------ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS-VPMAIALS 282 (591)
Q Consensus 221 ~~l~V~nLp~~---------~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~-A~~Al~l~ 282 (591)
-+++|-|+|.. ++.+.|.+.|..|.++. |..+.+.. ...|++.|+|..--. -..|+.|.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHHH
Confidence 35677777653 35578999999998875 55555544 468999999976433 45555444
No 231
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=43.67 E-value=32 Score=25.37 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHHHHhccCC-CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 336 TQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 336 ~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
++|.+.|...| +|..|.-+....+.......||++....+...++ .+. .+.+..|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~-~Ik---~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY-KIK---TLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee-ehH---hhCCeEEEEecC
Confidence 46888888888 7777776666556667778999988776544443 232 367888888764
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.09 E-value=6.8 Score=36.84 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=44.8
Q ss_pred CcceEEEeccCCCCCCCCchhhhh--HHHHHHHHhccccceEEEEEec----------CC-----Ce---------eEEE
Q 007742 497 PSECLLLKNMFDPAMETDPDFDLE--IQGDVEEECSKYGRVKHIYVDK----------RS-----AG---------FVYL 550 (591)
Q Consensus 497 ~s~~l~v~Nl~~p~~~~~~~~~~~--~~edl~~~f~~~G~V~~v~l~~----------~~-----~g---------~afV 550 (591)
.+.+|++.+|+..+...-++-+.+ -+.-|...|..||.|..|.||- .. .| -|||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 344677777733332211111111 1567999999999999997741 00 11 2467
Q ss_pred EeCCHHHHHHHHHHhccccc
Q 007742 551 RFESTEAAASAQRAMHMRWF 570 (591)
Q Consensus 551 ~F~~~e~A~~A~~~l~g~~~ 570 (591)
+|.....-..|+..|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 77777777778888887764
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.97 E-value=30 Score=28.68 Aligned_cols=58 Identities=12% Similarity=0.215 Sum_probs=25.7
Q ss_pred ceEEEeccCCCCCCCCch-hhhhHHHHHHHHhccccceEEEEE--ecCCCeeEEEEeCCHHHH
Q 007742 499 ECLLLKNMFDPAMETDPD-FDLEIQGDVEEECSKYGRVKHIYV--DKRSAGFVYLRFESTEAA 558 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~-~~~~~~edl~~~f~~~G~V~~v~l--~~~~~g~afV~F~~~e~A 558 (591)
.+++|-|+ +...+++. ..-.--+.|.+.|..|..+.-..+ .....|+++|+|...-..
T Consensus 9 wmgIi~N~--~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 9 WMGIIVNI--PTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -EEEEE------EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHH
T ss_pred CEEEEEcC--ccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHH
Confidence 46788888 44433222 111113567777777876653333 333578999999864443
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=41.04 E-value=77 Score=24.56 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 007742 324 LYVGNLHFNMTETQLRKLFEP-FG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 383 (591)
Q Consensus 324 l~v~nl~~~~~~~~l~~~f~~-~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l 383 (591)
.|+..++..++..+|++.++. || .|..|....-+ .+ .--|||.|.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 444566788999999999987 45 67777665443 22 235999999988887765443
No 235
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=39.96 E-value=73 Score=25.12 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=32.2
Q ss_pred CchhhhhHHHHHHHHhccccce--------EEEEEecCCCeeEEEEeCCHHHHHHHH
Q 007742 514 DPDFDLEIQGDVEEECSKYGRV--------KHIYVDKRSAGFVYLRFESTEAAASAQ 562 (591)
Q Consensus 514 ~~~~~~~~~edl~~~f~~~G~V--------~~v~l~~~~~g~afV~F~~~e~A~~A~ 562 (591)
|...|.+-...+...|.+||.= ..+.=.-.+...+.|+|.+.+.|..+.
T Consensus 14 D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 14 DPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred CHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 4456666667788888888732 222212234567899999999887754
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.47 E-value=5.8 Score=41.29 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=51.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g 385 (591)
.+.|++.|+++.++..+|..+|..+-.+..+.+........-..+++|.|.-.-....|+.+||+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 47899999999999999999999998777776654433333456789999887777777778887
No 237
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.84 E-value=29 Score=25.56 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=42.7
Q ss_pred HHHHHHhccCC-CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 336 TQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 336 ~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.+|.+.|..+| ++..|..+....+..+....+|+.....+.... |+=+ .+.|+.|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik-~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIK-TLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---Eeeh-hhCCeeEEEecC
Confidence 46888899999 788887777766666777889988776544442 2322 367888888764
No 238
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=38.53 E-value=3.4 Score=33.93 Aligned_cols=9 Identities=22% Similarity=0.371 Sum_probs=4.7
Q ss_pred EEEEeCCCC
Q 007742 222 TVFAYQMPL 230 (591)
Q Consensus 222 ~l~V~nLp~ 230 (591)
-||.+|+|+
T Consensus 87 Pvyy~nfpp 95 (146)
T PF11671_consen 87 PVYYGNFPP 95 (146)
T ss_pred ceEecCCCC
Confidence 355555554
No 239
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=38.48 E-value=1.4e+02 Score=26.83 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=53.1
Q ss_pred ceEEEcCCCCCCC-----HHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCe-EEE
Q 007742 322 RKLYVGNLHFNMT-----ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR-TLK 395 (591)
Q Consensus 322 ~~l~v~nl~~~~~-----~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~-~l~ 395 (591)
..+.+.+++..+- ......+|..|.+.....+++ +.+..-|-|.+++.|..|...+++. .|.|. .+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~-~f~~~~~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHST-SFNGKNELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhc-ccCCCceEE
Confidence 4566777765432 234456777777666555554 3567888999999999999999996 78888 777
Q ss_pred EEEecCCC
Q 007742 396 VSSVTDHV 403 (591)
Q Consensus 396 v~~~~~~~ 403 (591)
..++.+..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 77776544
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.57 E-value=46 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhccccceEEEEEe
Q 007742 519 LEIQGDVEEECSKYGRVKHIYVD 541 (591)
Q Consensus 519 ~~~~edl~~~f~~~G~V~~v~l~ 541 (591)
+.|..+|+++|+..|.|.-+++.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEc
Confidence 35678999999999999988874
No 241
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.54 E-value=46 Score=33.42 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=52.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccC-C-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDI-E-TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~-~-~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~ 395 (591)
..|.|.+||+.+++.+|.+-+.++- .+....+.... . .....+.|||-|...++.......++|.+.|+.+...
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kggt 84 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKGGT 84 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCCCC
Confidence 6788999999999999999888864 23333332111 0 1223568999999999988888888886555555433
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=36.28 E-value=1.1e+02 Score=23.33 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=39.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 007742 324 LYVGNLHFNMTETQLRKLFEP-FG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 382 (591)
Q Consensus 324 l~v~nl~~~~~~~~l~~~f~~-~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~ 382 (591)
-|+..++..++..+|+..++. || .|..|....-+ .+ .--|||.+.....|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHh
Confidence 455567889999999998887 45 67777655433 22 23599999888877766433
No 243
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=35.65 E-value=2.4e+02 Score=23.53 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=42.8
Q ss_pred CCCCchhhhhHHHHHHHHhccccceE---E-EEEecCCCeeEEEEeC--CHHHHHHHHHHhcccccCCeEEEEEE
Q 007742 511 METDPDFDLEIQGDVEEECSKYGRVK---H-IYVDKRSAGFVYLRFE--STEAAASAQRAMHMRWFARRLISAIF 579 (591)
Q Consensus 511 ~~~~~~~~~~~~edl~~~f~~~G~V~---~-v~l~~~~~g~afV~F~--~~e~A~~A~~~l~g~~~~g~~l~v~~ 579 (591)
..+..++...|.+.+..+|..+|.-. . +++ .+.++.|.|... ..+.+..|+..++ .++|.++.+.-
T Consensus 28 ~~~~~~l~~~Ir~av~~~fGd~G~~~~~~~li~f-~~~t~~gIlRc~R~~~~~v~aAL~li~--~i~~~~v~ir~ 99 (120)
T PRK03717 28 PFTKDEIKKAIWEASLSTLGELGTARAKPWFIKF-DEKTQTGIVRCDRKHVEELRFALTLVT--EINGSKAIIRT 99 (120)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhhccccceEEEE-eCCCCEEEEEcCchhHHHHHHHHHHHH--hCCCeeEEEEE
Confidence 35667888889999999999998521 1 222 234566677664 4555677776655 45677665543
No 244
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=34.84 E-value=1.3e+02 Score=30.42 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=31.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCeeeCC--eEEEEEEecCCC
Q 007742 363 KGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSSVTDHV 403 (591)
Q Consensus 363 ~g~a~Vef~~~~~a~~a~~~l~g~~~~~g--~~l~v~~~~~~~ 403 (591)
..||.|+|.+++.+......|+|. ++.. ..+-+.|..+..
T Consensus 258 yYyAvvec~d~~tsK~iY~~CDG~-Eye~san~~DLRfvPD~~ 299 (622)
T COG5638 258 YYYAVVECEDIETSKNIYSACDGV-EYENSANVLDLRFVPDSL 299 (622)
T ss_pred eEEEEEEeccchhhHHHHhccCcc-ccccccceeeeeecCCCc
Confidence 458999999999999999999995 5553 566666766543
No 245
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.99 E-value=1e+02 Score=31.05 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCccceEEEEecCcchHHHHHHH
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKV-RDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAL 281 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i-~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l 281 (591)
-.+.|-|.+.|....-+||...|..|+.- -.|..+-+. .||-.|.++..|..||.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 45889999999998888899999998642 344444332 699999999999999976
No 246
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=33.24 E-value=1.8e+02 Score=20.80 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHHhcccc-ceEEEEEecC-CCeeEEEEeCCHHHHHHHHHHhccc
Q 007742 522 QGDVEEECSKYG-RVKHIYVDKR-SAGFVYLRFESTEAAASAQRAMHMR 568 (591)
Q Consensus 522 ~edl~~~f~~~G-~V~~v~l~~~-~~g~afV~F~~~e~A~~A~~~l~g~ 568 (591)
..+|.++|.+.| .|.++.+... ..+...|.+.+.+.|..+++. +|.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCC
Confidence 467888887776 6777765322 245555666676666666654 343
No 247
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=33.17 E-value=96 Score=25.03 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCCchhhhhHHHHHHHHhccccceEEEEE-----e-cC--------------CCeeEEEEeCCHHHHHHHHHHh
Q 007742 512 ETDPDFDLEIQGDVEEECSKYGRVKHIYV-----D-KR--------------SAGFVYLRFESTEAAASAQRAM 565 (591)
Q Consensus 512 ~~~~~~~~~~~edl~~~f~~~G~V~~v~l-----~-~~--------------~~g~afV~F~~~e~A~~A~~~l 565 (591)
..+.+.|.++-+..-.+|..||.+..+.. + +. ..-|.+|.|.+.+....|..++
T Consensus 12 ~~nk~aY~~~A~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 12 TANKDAYRAMAEKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 33567888888899999999998877754 1 10 1237899999999888887765
No 248
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.47 E-value=69 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=24.0
Q ss_pred CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 007742 347 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385 (591)
Q Consensus 347 ~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g 385 (591)
.|.++..+.+ .+||.|||=.+..++..|+..+.+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 5666666433 589999999999999999877776
No 249
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=32.12 E-value=73 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.1
Q ss_pred eEEEEeCCHHHHHHHHHHhcccccC
Q 007742 547 FVYLRFESTEAAASAQRAMHMRWFA 571 (591)
Q Consensus 547 ~afV~F~~~e~A~~A~~~l~g~~~~ 571 (591)
..+|.|.+..+|.+|-+.|...-+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 5799999999999999988766543
No 250
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.45 E-value=1.2e+02 Score=26.51 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHhcccc-ceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc
Q 007742 522 QGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW 569 (591)
Q Consensus 522 ~edl~~~f~~~G-~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~ 569 (591)
...|...+...| .|.++.++..-+||.||+....+++..++..+.|..
T Consensus 22 ~~~L~~~~~~~~~~i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 22 ALMLAMRAKKENLPIYAILAPPELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred HHHHHHHHHhCCCcEEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 445555554222 277888888889999999998888888988776543
No 251
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=3.5e+02 Score=22.67 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=47.5
Q ss_pred ccCCCCCCCCchhhhhHHHHHHHHhccccceE-EEEE----ecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEE
Q 007742 505 NMFDPAMETDPDFDLEIQGDVEEECSKYGRVK-HIYV----DKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIF 579 (591)
Q Consensus 505 Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~-~v~l----~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~ 579 (591)
.+.++...+-.++...|...+.++|..+|.=. ...+ ..-+.|..-+.=...+.+..|+..+. .++|++|.|.-
T Consensus 22 ~vise~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~ 99 (124)
T COG1369 22 EVISEEEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFSTGTGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVV 99 (124)
T ss_pred EEeccccCChhHHHHHHHHHHHHHcCcccccccceeEEEEeccCCceEEEEechhHHHHHHHHHHHH--HhCCceEEEEE
Confidence 33344566666777777777888888777332 1222 22345555555568889999998776 88888887764
No 252
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.36 E-value=1.4e+02 Score=28.56 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=36.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCccceEEEEecCcchH
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKV-RDVRLIMDRNSRRSKGVGYIEFYDVMSV 275 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i-~~v~~~~d~~~g~~~G~afV~F~~~e~A 275 (591)
.-|+|+|||-++.-.||+..+.+.|.+ ..+.. . ...|-||+.|.+...|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k----g~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K----GHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee--e----cCCcceeEecCCccCC
Confidence 569999999999999999999887643 22222 1 2467899999875443
No 253
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.11 E-value=1.3e+02 Score=26.74 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=32.1
Q ss_pred HHHHHHHhccccceEEEEEec------CCCeeEEEEeCCHHHHHHHHHH
Q 007742 522 QGDVEEECSKYGRVKHIYVDK------RSAGFVYLRFESTEAAASAQRA 564 (591)
Q Consensus 522 ~edl~~~f~~~G~V~~v~l~~------~~~g~afV~F~~~e~A~~A~~~ 564 (591)
.++|.++.+ |.+..|.+.+ .-+|..||.|.+.++|.+.+..
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 567777777 8888887743 3478999999999999987763
No 254
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.81 E-value=29 Score=34.93 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=45.6
Q ss_pred ceEEEcCCCCCCC--------HHHHHHHhcc--CCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHH
Q 007742 322 RKLYVGNLHFNMT--------ETQLRKLFEP--FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380 (591)
Q Consensus 322 ~~l~v~nl~~~~~--------~~~l~~~f~~--~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~ 380 (591)
+.+|+.++..... .+++...|.+ ++++..|.+..+.......|..|++|.....|+.++
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 5666666654433 3589999999 678888888777666778899999999999988875
No 255
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.66 E-value=3.3e+02 Score=21.36 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=41.5
Q ss_pred HHHHHHHHhcccc-ceEEEEE-ecCCCeeEEEEeCCHHHHHHHHHHhcccccC-CeEEEEEEeCchhhhh
Q 007742 521 IQGDVEEECSKYG-RVKHIYV-DKRSAGFVYLRFESTEAAASAQRAMHMRWFA-RRLISAIFMKPEDYEA 587 (591)
Q Consensus 521 ~~edl~~~f~~~G-~V~~v~l-~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~-g~~l~v~~~~~~~~~~ 587 (591)
..+.+.+++..+| .|.++++ .+.-...+.+++.+.+.|.++...+.. .+ -+.-.+..++.++|..
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~--~G~v~~et~~a~~~~e~~~ 88 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS--SGNVRTETLRAFPWDEFDE 88 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc--CCceEEEEEecCCHHHHHH
Confidence 3567777777775 7777766 445566778999999988877754432 22 1334455556665544
No 256
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=24.46 E-value=64 Score=30.14 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=8.3
Q ss_pred CcccEEEEEeCCHH
Q 007742 361 QCKGFGFVQFAQLE 374 (591)
Q Consensus 361 ~~~g~a~Vef~~~~ 374 (591)
.++-.|.++|..++
T Consensus 214 cSKQHaviQyR~v~ 227 (293)
T KOG1882|consen 214 CSKQHAVIQYRLVE 227 (293)
T ss_pred ccccceeeeeeecc
Confidence 34556777776543
No 257
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.12 E-value=21 Score=36.20 Aligned_cols=75 Identities=7% Similarity=-0.178 Sum_probs=58.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.+.++..||...++.++.-+|..||.|..+.+.+..+.|...-.+||..... .|..++ .+..+.+.|.+++|..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcC
Confidence 4557788999999999999999999999988887777777788888877653 455556 56667777777776544
No 258
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=22.68 E-value=35 Score=36.78 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=4.0
Q ss_pred HHHhccccce
Q 007742 526 EEECSKYGRV 535 (591)
Q Consensus 526 ~~~f~~~G~V 535 (591)
..++..+|..
T Consensus 549 ~~l~~~~G~~ 558 (705)
T KOG2217|consen 549 LDLALKKGKL 558 (705)
T ss_pred HHHhhhcccc
Confidence 3344444433
No 259
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=21.03 E-value=46 Score=35.91 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=7.6
Q ss_pred EeCCHHHHHHHHHHhc
Q 007742 551 RFESTEAAASAQRAMH 566 (591)
Q Consensus 551 ~F~~~e~A~~A~~~l~ 566 (591)
+|-..-.+..|+..|.
T Consensus 622 E~Gr~LtpKEAyR~LS 637 (705)
T KOG2217|consen 622 EFGRELTPKEAYRLLS 637 (705)
T ss_pred ccCccCCHHHHHHHHh
Confidence 3444444555555444
No 260
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=21 Score=36.21 Aligned_cols=79 Identities=5% Similarity=-0.106 Sum_probs=57.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
...+|..+|....++++.-+|..||.|..+.+....+.+...-++||.... .+|..+++.+.-+ .+.|.++++..++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q-~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQ-TTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHh-hhhhhhhhhhcCch
Confidence 456788899999999999999999999988877665556666677776654 3566666665544 46676777765554
Q ss_pred C
Q 007742 402 H 402 (591)
Q Consensus 402 ~ 402 (591)
.
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 3
No 261
>PRK10905 cell division protein DamX; Validated
Probab=20.21 E-value=2.7e+02 Score=27.49 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=36.8
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCee-EE----EEeCCHHHHHHHHHHhccc
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF-VY----LRFESTEAAASAQRAMHMR 568 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~-af----V~F~~~e~A~~A~~~l~g~ 568 (591)
....+|.|.-+.+ .+.|..+..++|.=.++++.....|. +| =.|.+.++|..|+..|---
T Consensus 245 a~~YTLQL~A~Ss-------------~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSSSN-------------YDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEecCC-------------HHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 3446788888844 56677777666532233222222222 22 3689999999999988543
Done!