Query 007742
Match_columns 591
No_of_seqs 377 out of 3422
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.3E-39 7.9E-44 319.9 29.6 240 219-585 21-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-39 5.1E-44 322.6 27.4 246 217-583 38-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.1E-30 3.6E-35 245.7 20.0 168 217-401 12-180 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 8.4E-30 2.9E-34 236.9 20.2 176 217-404 10-185 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 1.7E-29 5.8E-34 228.1 20.0 164 221-400 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-29 4.8E-34 229.2 19.4 164 219-399 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 2.8E-29 9.7E-34 226.9 20.3 163 220-399 2-167 (167)
8 2cjk_A Nuclear polyadenylated 100.0 1.1E-29 3.8E-34 229.6 14.9 164 219-401 2-165 (167)
9 2qfj_A FBP-interacting repress 100.0 2.5E-29 8.6E-34 237.5 17.1 177 220-402 28-205 (216)
10 3nmr_A Cugbp ELAV-like family 100.0 2.6E-28 9E-33 222.4 19.4 165 219-399 2-174 (175)
11 4f02_A Polyadenylate-binding p 100.0 4.5E-28 1.5E-32 227.7 18.7 166 320-584 14-182 (213)
12 3pgw_A U1-A; protein-RNA compl 100.0 9.6E-27 3.3E-31 229.1 27.2 247 318-581 6-281 (282)
13 2g4b_A Splicing factor U2AF 65 100.0 8.2E-28 2.8E-32 218.4 17.9 158 219-399 3-171 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 2.5E-27 8.4E-32 220.6 20.7 177 219-402 3-194 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 1.8E-28 6.1E-33 223.5 12.7 166 216-402 9-174 (175)
16 3smz_A Protein raver-1, ribonu 99.9 1.2E-26 4E-31 228.8 22.4 169 219-402 94-264 (284)
17 3md3_A Nuclear and cytoplasmic 99.9 1.4E-26 4.7E-31 209.0 20.1 161 322-582 1-166 (166)
18 3tyt_A Heterogeneous nuclear r 99.9 7.5E-27 2.5E-31 216.8 18.8 173 219-399 3-204 (205)
19 1b7f_A Protein (SXL-lethal pro 99.9 2.2E-26 7.4E-31 208.1 20.6 159 321-580 3-168 (168)
20 1fxl_A Paraneoplastic encephal 99.9 5.1E-26 1.7E-30 205.4 20.9 159 321-580 2-167 (167)
21 2adc_A Polypyrimidine tract-bi 99.9 2.4E-26 8.4E-31 218.5 19.6 174 217-401 31-227 (229)
22 3pgw_A U1-A; protein-RNA compl 99.9 5.2E-26 1.8E-30 223.9 22.3 175 217-400 6-281 (282)
23 2qfj_A FBP-interacting repress 99.9 9.9E-26 3.4E-30 212.8 21.3 176 322-587 29-209 (216)
24 1l3k_A Heterogeneous nuclear r 99.9 1E-25 3.6E-30 209.2 20.4 169 321-586 13-186 (196)
25 2ghp_A U4/U6 snRNA-associated 99.9 3.3E-26 1.1E-30 226.6 17.7 172 219-402 116-291 (292)
26 1qm9_A Polypyrimidine tract-bi 99.9 4.3E-26 1.5E-30 212.1 17.5 171 220-401 3-196 (198)
27 3sde_A Paraspeckle component 1 99.9 1.2E-25 3.9E-30 218.2 18.6 157 217-402 19-179 (261)
28 2adc_A Polypyrimidine tract-bi 99.9 4E-25 1.4E-29 210.1 21.2 194 319-583 32-228 (229)
29 3nmr_A Cugbp ELAV-like family 99.9 2.8E-25 9.7E-30 202.2 18.4 161 321-581 3-175 (175)
30 1qm9_A Polypyrimidine tract-bi 99.9 5E-25 1.7E-29 204.8 18.4 192 321-583 3-197 (198)
31 1fje_B Nucleolin RBD12, protei 99.9 1.2E-25 4E-30 204.7 13.1 163 320-583 12-174 (175)
32 2cjk_A Nuclear polyadenylated 99.9 2.5E-25 8.6E-30 200.9 14.4 159 321-583 3-166 (167)
33 3tyt_A Heterogeneous nuclear r 99.9 1.9E-24 6.4E-29 200.6 20.3 191 320-579 3-203 (205)
34 2yh0_A Splicing factor U2AF 65 99.9 3.1E-24 1.1E-28 199.5 20.4 176 321-584 4-195 (198)
35 2g4b_A Splicing factor U2AF 65 99.9 4.6E-24 1.6E-28 193.6 17.9 153 321-581 4-172 (172)
36 3sde_A Paraspeckle component 1 99.9 4.2E-23 1.4E-27 200.1 19.7 151 321-584 22-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-19 4.9E-24 161.2 16.2 148 249-402 2-150 (158)
38 3s6e_A RNA-binding protein 39; 99.8 5.2E-20 1.8E-24 151.9 10.9 97 495-591 4-101 (114)
39 4f25_A Polyadenylate-binding p 99.8 1.7E-19 5.9E-24 150.9 9.3 107 220-336 5-112 (115)
40 3v4m_A Splicing factor U2AF 65 99.8 7.9E-19 2.7E-23 143.3 10.3 94 495-588 2-102 (105)
41 2i2y_A Fusion protein consists 99.8 1.1E-18 3.9E-23 153.7 11.3 136 259-401 10-147 (150)
42 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-18 6E-23 140.1 10.4 80 219-298 18-98 (99)
43 2i2y_A Fusion protein consists 99.7 1.4E-17 4.8E-22 146.7 10.5 139 359-583 9-148 (150)
44 2kn4_A Immunoglobulin G-bindin 99.7 2.6E-17 8.9E-22 146.5 12.1 79 496-584 68-151 (158)
45 3s8s_A Histone-lysine N-methyl 99.7 3.7E-17 1.3E-21 135.0 10.5 83 218-300 4-87 (110)
46 2lxi_A RNA-binding protein 10; 99.7 7.5E-18 2.6E-22 134.3 5.2 81 220-300 1-84 (91)
47 4fxv_A ELAV-like protein 1; RN 99.7 8.4E-17 2.9E-21 130.2 11.2 80 321-401 19-98 (99)
48 2dgs_A DAZ-associated protein 99.7 1.4E-16 4.7E-21 129.5 12.0 84 217-300 7-90 (99)
49 2lkz_A RNA-binding protein 5; 99.7 5.7E-17 2E-21 129.5 8.7 80 218-297 7-93 (95)
50 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.9E-17 3.4E-21 127.0 9.5 82 218-299 4-86 (87)
51 3s7r_A Heterogeneous nuclear r 99.7 1.3E-16 4.3E-21 126.4 10.1 80 217-296 8-87 (87)
52 1whw_A Hypothetical protein ri 99.7 1.6E-16 5.5E-21 129.2 11.0 85 217-301 5-90 (99)
53 2dgo_A Cytotoxic granule-assoc 99.7 3.4E-16 1.2E-20 131.0 13.1 86 217-302 12-98 (115)
54 3p5t_L Cleavage and polyadenyl 99.7 4.4E-17 1.5E-21 129.8 6.8 80 221-300 2-84 (90)
55 2dnm_A SRP46 splicing factor; 99.7 2.8E-16 9.7E-21 128.7 11.5 84 217-300 10-94 (103)
56 2dnz_A Probable RNA-binding pr 99.7 2.9E-16 9.9E-21 126.6 11.4 83 218-300 3-86 (95)
57 3ue2_A Poly(U)-binding-splicin 99.7 1.5E-16 5.2E-21 132.1 9.7 88 496-588 18-114 (118)
58 2pe8_A Splicing factor 45; RRM 99.7 3E-16 1E-20 127.9 11.1 90 494-588 4-99 (105)
59 3md1_A Nuclear and cytoplasmic 99.7 2.3E-16 8E-21 123.6 10.0 79 221-299 2-81 (83)
60 1p27_B RNA-binding protein 8A; 99.7 2.2E-16 7.6E-21 130.1 10.3 83 217-299 20-103 (106)
61 2lxi_A RNA-binding protein 10; 99.7 8.8E-17 3E-21 128.0 7.6 81 322-402 2-83 (91)
62 1x5u_A Splicing factor 3B subu 99.7 3.4E-16 1.2E-20 128.8 11.3 86 215-300 10-96 (105)
63 2lkz_A RNA-binding protein 5; 99.7 2.1E-16 7.1E-21 126.2 9.2 80 322-401 10-94 (95)
64 2la6_A RNA-binding protein FUS 99.7 3.5E-16 1.2E-20 127.1 10.7 84 213-296 6-98 (99)
65 2dng_A Eukaryotic translation 99.7 3.2E-16 1.1E-20 128.3 10.6 85 215-300 10-94 (103)
66 1s79_A Lupus LA protein; RRM, 99.7 1.4E-16 4.9E-21 129.6 8.3 79 219-298 10-88 (103)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.6E-16 8.8E-21 124.0 9.5 79 218-296 5-84 (85)
68 2cq4_A RNA binding motif prote 99.7 1.3E-16 4.4E-21 133.3 8.2 83 219-301 24-106 (114)
69 3ns6_A Eukaryotic translation 99.7 8.6E-17 2.9E-21 130.7 6.8 82 219-300 5-94 (100)
70 2x1f_A MRNA 3'-END-processing 99.7 3.2E-16 1.1E-20 126.5 10.1 82 220-301 2-84 (96)
71 2cqc_A Arginine/serine-rich sp 99.7 3.5E-16 1.2E-20 126.1 10.3 82 217-298 12-94 (95)
72 1x5s_A Cold-inducible RNA-bind 99.7 3.4E-16 1.2E-20 128.0 10.3 85 216-300 8-93 (102)
73 3pgw_S U1-70K; protein-RNA com 99.7 1.1E-16 3.7E-21 165.1 9.0 167 236-403 8-183 (437)
74 2cq0_A Eukaryotic translation 99.7 2.8E-16 9.7E-21 128.7 9.8 84 217-300 12-96 (103)
75 2jrs_A RNA-binding protein 39; 99.7 4.2E-16 1.4E-20 128.5 10.7 84 216-299 22-106 (108)
76 2cph_A RNA binding motif prote 99.7 5.5E-16 1.9E-20 128.0 11.3 86 216-301 11-99 (107)
77 4f25_A Polyadenylate-binding p 99.7 4.3E-16 1.5E-20 130.1 10.7 77 322-401 6-82 (115)
78 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.4E-16 8.4E-21 128.8 9.0 84 217-300 9-93 (102)
79 2cpz_A CUG triplet repeat RNA- 99.7 4.3E-16 1.5E-20 130.4 10.7 85 217-301 22-107 (115)
80 1wi8_A EIF-4B, eukaryotic tran 99.7 4.4E-16 1.5E-20 127.8 10.4 85 216-301 11-96 (104)
81 3lqv_A PRE-mRNA branch site pr 99.7 2.5E-16 8.4E-21 131.9 9.0 104 217-347 5-109 (115)
82 1x4h_A RNA-binding protein 28; 99.7 6.3E-16 2.2E-20 128.5 11.4 84 217-300 12-102 (111)
83 2mss_A Protein (musashi1); RNA 99.7 1.3E-16 4.5E-21 122.4 6.6 75 222-296 1-75 (75)
84 3ucg_A Polyadenylate-binding p 99.7 4.2E-16 1.4E-20 124.0 9.7 79 220-298 6-84 (89)
85 1oo0_B CG8781-PA, drosophila Y 99.6 4.3E-16 1.5E-20 129.3 10.1 83 217-299 23-106 (110)
86 2cqd_A RNA-binding region cont 99.6 9.2E-16 3.2E-20 128.6 12.2 84 216-300 13-97 (116)
87 2do4_A Squamous cell carcinoma 99.6 6.5E-16 2.2E-20 125.7 10.9 82 217-299 14-96 (100)
88 2dgp_A Bruno-like 4, RNA bindi 99.6 5E-16 1.7E-20 127.9 10.3 86 215-300 8-97 (106)
89 2dh8_A DAZ-associated protein 99.6 4.9E-16 1.7E-20 127.7 10.2 84 217-300 13-96 (105)
90 3s8s_A Histone-lysine N-methyl 99.6 1E-15 3.6E-20 126.2 12.1 80 320-400 5-84 (110)
91 2cpf_A RNA binding motif prote 99.6 3.8E-16 1.3E-20 126.6 9.3 84 218-301 3-90 (98)
92 1x5t_A Splicing factor 3B subu 99.6 3.5E-16 1.2E-20 126.4 9.0 83 218-300 3-87 (96)
93 2div_A TRNA selenocysteine ass 99.6 2.9E-16 1E-20 127.6 8.4 83 217-299 6-94 (99)
94 2fy1_A RNA-binding motif prote 99.6 7.9E-16 2.7E-20 128.6 11.2 82 218-300 5-87 (116)
95 2e5h_A Zinc finger CCHC-type a 99.6 5.8E-16 2E-20 124.5 9.9 80 217-296 13-93 (94)
96 2dhg_A TRNA selenocysteine ass 99.6 7.8E-16 2.7E-20 126.3 10.9 84 217-301 6-92 (104)
97 2kxn_B Transformer-2 protein h 99.6 5.1E-16 1.8E-20 132.2 9.9 83 217-299 43-126 (129)
98 2d9p_A Polyadenylate-binding p 99.6 7.7E-16 2.6E-20 126.1 10.4 83 217-301 12-95 (103)
99 2dnh_A Bruno-like 5, RNA bindi 99.6 1.1E-15 3.8E-20 125.6 11.4 84 217-301 12-99 (105)
100 2cpy_A RNA-binding protein 12; 99.6 2.9E-16 9.8E-21 131.0 7.9 84 216-300 11-95 (114)
101 2hvz_A Splicing factor, argini 99.6 4.1E-16 1.4E-20 127.2 8.2 99 221-330 1-100 (101)
102 3ex7_B RNA-binding protein 8A; 99.6 6.9E-16 2.4E-20 131.5 10.0 86 216-301 18-104 (126)
103 1x4e_A RNA binding motif, sing 99.6 2.3E-16 7.7E-21 124.3 6.5 80 218-297 3-83 (85)
104 2rs2_A Musashi-1, RNA-binding 99.6 5.6E-16 1.9E-20 128.0 9.0 86 214-299 19-104 (109)
105 2cpe_A RNA-binding protein EWS 99.6 9.7E-16 3.3E-20 127.8 10.6 85 217-301 12-105 (113)
106 2do0_A HnRNP M, heterogeneous 99.6 2.5E-15 8.6E-20 125.5 12.8 84 215-299 10-94 (114)
107 2e5h_A Zinc finger CCHC-type a 99.6 3.5E-15 1.2E-19 119.9 13.1 83 317-400 12-94 (94)
108 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.1E-20 123.9 11.6 85 216-301 11-95 (103)
109 1wez_A HnRNP H', FTP-3, hetero 99.6 3.7E-16 1.3E-20 127.2 7.4 80 217-298 12-91 (102)
110 2cq3_A RNA-binding protein 9; 99.6 2.7E-15 9.2E-20 122.8 12.4 85 214-300 9-94 (103)
111 3n9u_C Cleavage and polyadenyl 99.6 7.4E-16 2.5E-20 135.6 9.5 81 219-299 54-137 (156)
112 2wbr_A GW182, gawky, LD47780P; 99.6 1.1E-15 3.9E-20 116.8 9.1 83 496-589 5-87 (89)
113 2m2b_A RNA-binding protein 10; 99.6 6.4E-16 2.2E-20 132.4 8.7 85 216-301 19-110 (131)
114 3ulh_A THO complex subunit 4; 99.6 1.2E-15 4.3E-20 125.8 10.1 80 217-297 26-106 (107)
115 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.3E-15 7.9E-20 123.2 11.6 83 216-300 11-94 (103)
116 2ywk_A Putative RNA-binding pr 99.6 1.3E-15 4.4E-20 122.8 9.9 80 217-297 13-93 (95)
117 2dgo_A Cytotoxic granule-assoc 99.6 8.1E-15 2.8E-19 122.6 15.1 85 319-404 13-97 (115)
118 1u6f_A Tcubp1, RNA-binding pro 99.6 1.9E-15 6.6E-20 131.1 11.5 85 217-301 39-124 (139)
119 4a8x_A RNA-binding protein wit 99.6 8.1E-16 2.8E-20 122.0 8.3 81 219-299 3-85 (88)
120 1sjq_A Polypyrimidine tract-bi 99.6 1.1E-15 3.7E-20 123.1 9.0 77 218-300 14-93 (105)
121 2dgx_A KIAA0430 protein; RRM d 99.6 1.5E-15 5E-20 122.5 9.9 80 217-299 6-90 (96)
122 1wg5_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 124.8 9.6 81 217-298 12-93 (104)
123 2khc_A Testis-specific RNP-typ 99.6 1.2E-15 4E-20 128.4 9.6 80 217-296 37-117 (118)
124 3r27_A HnRNP L, heterogeneous 99.6 2E-15 6.7E-20 120.3 10.0 77 217-299 18-97 (100)
125 2cqc_A Arginine/serine-rich sp 99.6 5.2E-15 1.8E-19 119.2 12.7 83 318-401 12-94 (95)
126 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.5E-16 1.2E-20 127.2 5.7 82 216-298 15-97 (100)
127 2lea_A Serine/arginine-rich sp 99.6 4.7E-16 1.6E-20 133.7 6.7 121 264-402 6-127 (135)
128 3r27_A HnRNP L, heterogeneous 99.6 3.2E-15 1.1E-19 119.1 10.8 80 494-584 17-98 (100)
129 1whw_A Hypothetical protein ri 99.6 6.6E-15 2.3E-19 119.5 13.0 84 320-404 7-90 (99)
130 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.3E-15 1.1E-19 117.6 10.8 79 320-399 6-84 (85)
131 2dgw_A Probable RNA-binding pr 99.6 1.8E-15 6E-20 120.8 9.2 81 217-299 7-87 (91)
132 1iqt_A AUF1, heterogeneous nuc 99.6 4E-16 1.4E-20 119.7 5.1 75 222-296 1-75 (75)
133 2dnn_A RNA-binding protein 12; 99.6 9.5E-16 3.2E-20 125.7 7.6 80 219-300 15-94 (109)
134 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.9E-15 2E-19 120.6 12.4 84 319-403 10-93 (102)
135 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3E-15 1E-19 133.8 11.5 135 267-402 11-152 (165)
136 1p1t_A Cleavage stimulation fa 99.6 6.9E-16 2.4E-20 126.6 6.7 84 219-302 7-91 (104)
137 1x4b_A Heterogeneous nuclear r 99.6 1.8E-15 6.1E-20 126.8 9.3 82 220-301 27-108 (116)
138 2dgv_A HnRNP M, heterogeneous 99.6 2.6E-15 9E-20 120.1 9.9 81 217-299 5-86 (92)
139 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.4E-15 8.1E-20 134.5 10.6 84 217-300 69-153 (165)
140 3md1_A Nuclear and cytoplasmic 99.6 5.6E-15 1.9E-19 115.7 11.5 80 322-402 2-81 (83)
141 2cq0_A Eukaryotic translation 99.6 8.2E-15 2.8E-19 119.9 12.9 84 318-402 12-95 (103)
142 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.8E-15 1.6E-19 117.2 11.1 80 321-401 6-85 (87)
143 2ek1_A RNA-binding protein 12; 99.6 8.1E-16 2.8E-20 123.9 6.7 79 219-297 14-93 (95)
144 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 124.0 7.4 81 218-298 13-94 (98)
145 2nlw_A Eukaryotic translation 99.6 2.4E-15 8.2E-20 123.4 9.5 80 217-298 12-99 (105)
146 2dis_A Unnamed protein product 99.6 3.3E-15 1.1E-19 123.7 10.3 84 218-301 6-94 (109)
147 2jwn_A Embryonic polyadenylate 99.6 1.9E-15 6.5E-20 128.3 9.0 80 220-299 36-115 (124)
148 2dgs_A DAZ-associated protein 99.6 9.5E-15 3.3E-19 118.5 12.7 83 319-403 8-90 (99)
149 1wel_A RNA-binding protein 12; 99.6 5.1E-16 1.7E-20 131.7 5.2 84 217-300 22-105 (124)
150 2dnz_A Probable RNA-binding pr 99.6 6.7E-15 2.3E-19 118.5 11.5 83 320-403 4-86 (95)
151 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 127.7 7.5 83 217-300 14-99 (118)
152 2x1f_A MRNA 3'-END-processing 99.6 6.7E-15 2.3E-19 118.7 11.2 81 321-402 2-82 (96)
153 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.5E-15 5E-20 117.1 7.0 75 221-296 1-76 (77)
154 1x5s_A Cold-inducible RNA-bind 99.6 5.4E-15 1.8E-19 120.8 10.8 84 319-403 10-93 (102)
155 2kt5_A RNA and export factor-b 99.6 4.9E-15 1.7E-19 125.7 10.8 82 217-299 32-114 (124)
156 2err_A Ataxin-2-binding protei 99.6 3.7E-15 1.3E-19 123.1 9.7 85 212-298 21-106 (109)
157 2wbr_A GW182, gawky, LD47780P; 99.6 5.3E-15 1.8E-19 113.1 9.6 73 321-400 7-79 (89)
158 2do4_A Squamous cell carcinoma 99.6 1.8E-14 6.3E-19 117.1 13.7 82 319-402 15-96 (100)
159 2ki2_A SS-DNA binding protein 99.6 5.1E-16 1.7E-20 123.7 4.2 79 221-300 2-81 (90)
160 1x4h_A RNA-binding protein 28; 99.6 1.6E-14 5.3E-19 120.0 13.5 84 319-403 13-102 (111)
161 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4.1E-20 130.3 6.7 83 217-300 41-126 (136)
162 1x5u_A Splicing factor 3B subu 99.6 9.7E-15 3.3E-19 119.9 11.9 84 319-403 13-96 (105)
163 2dnm_A SRP46 splicing factor; 99.6 7.1E-15 2.4E-19 120.3 11.1 83 319-402 11-93 (103)
164 2lmi_A GRSF-1, G-rich sequence 99.6 8.3E-16 2.8E-20 126.6 5.5 83 217-300 8-93 (107)
165 1wex_A Hypothetical protein (r 99.6 7.1E-15 2.4E-19 119.5 10.9 78 217-300 12-92 (104)
166 2krb_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 118.1 6.7 72 220-293 1-80 (81)
167 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.2E-15 1.4E-19 131.7 10.3 84 217-300 36-120 (156)
168 2ad9_A Polypyrimidine tract-bi 99.6 6.3E-15 2.2E-19 121.9 10.5 78 217-300 28-108 (119)
169 1x4d_A Matrin 3; structural ge 99.6 2.7E-15 9.3E-20 120.9 8.0 77 218-300 13-93 (102)
170 2hgm_A HNRPF protein, heteroge 99.6 2.4E-15 8.1E-20 126.3 8.0 80 217-298 39-120 (126)
171 2jrs_A RNA-binding protein 39; 99.6 8.1E-15 2.8E-19 120.7 11.0 83 319-402 24-106 (108)
172 2cpz_A CUG triplet repeat RNA- 99.6 1.5E-14 5.2E-19 120.9 12.9 84 319-403 23-106 (115)
173 2la6_A RNA-binding protein FUS 99.6 9.5E-15 3.3E-19 118.5 11.3 80 319-399 11-98 (99)
174 2dit_A HIV TAT specific factor 99.6 4.1E-15 1.4E-19 123.5 8.9 91 495-585 12-104 (112)
175 2do0_A HnRNP M, heterogeneous 99.6 5E-14 1.7E-18 117.6 15.6 83 318-402 12-94 (114)
176 2a3j_A U1 small nuclear ribonu 99.6 5E-15 1.7E-19 124.9 9.5 82 217-301 26-112 (127)
177 2cpi_A CCR4-NOT transcription 99.6 3.6E-15 1.2E-19 123.7 8.4 83 218-300 13-102 (111)
178 2cph_A RNA binding motif prote 99.6 1.6E-14 5.6E-19 119.1 12.1 85 318-403 12-98 (107)
179 3ns6_A Eukaryotic translation 99.6 2.3E-15 7.8E-20 122.2 6.7 80 321-401 6-92 (100)
180 1fj7_A Nucleolin RBD1, protein 99.6 7.3E-16 2.5E-20 125.7 3.8 82 217-299 14-95 (101)
181 2lea_A Serine/arginine-rich sp 99.6 1.7E-15 5.9E-20 130.1 6.3 84 217-300 44-128 (135)
182 1x5t_A Splicing factor 3B subu 99.6 8.5E-15 2.9E-19 118.1 10.0 82 321-403 5-87 (96)
183 1x4a_A Splicing factor, argini 99.6 1.7E-14 5.8E-19 119.3 12.1 81 217-300 19-100 (109)
184 2cqd_A RNA-binding region cont 99.6 3.4E-14 1.2E-18 118.9 14.0 84 317-402 13-96 (116)
185 2cpf_A RNA binding motif prote 99.6 1.1E-14 3.7E-19 118.0 10.6 83 320-403 4-89 (98)
186 2xs2_A Deleted in azoospermia- 99.6 3.4E-15 1.2E-19 122.0 7.5 81 218-300 7-87 (102)
187 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.6E-15 2.6E-19 127.6 10.1 81 216-296 59-140 (140)
188 1x5o_A RNA binding motif, sing 99.6 1E-14 3.6E-19 121.7 10.5 81 217-298 22-111 (114)
189 2ywk_A Putative RNA-binding pr 99.6 1.3E-14 4.4E-19 116.8 10.6 80 319-400 14-93 (95)
190 2d9p_A Polyadenylate-binding p 99.6 2.4E-14 8.3E-19 117.1 12.4 81 320-403 14-94 (103)
191 3ulh_A THO complex subunit 4; 99.6 1.9E-14 6.3E-19 118.7 11.7 80 319-400 27-106 (107)
192 1p27_B RNA-binding protein 8A; 99.6 1.2E-14 4E-19 119.7 10.4 82 320-402 22-103 (106)
193 1oo0_B CG8781-PA, drosophila Y 99.6 1.7E-14 5.8E-19 119.6 11.4 83 319-402 24-106 (110)
194 1sjq_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 119.2 7.9 80 495-585 13-94 (105)
195 2cqp_A RNA-binding protein 12; 99.6 1.1E-14 3.8E-19 117.9 10.0 82 319-401 13-94 (98)
196 2dnq_A RNA-binding protein 4B; 99.6 1.9E-14 6.6E-19 114.4 11.1 77 217-301 5-82 (90)
197 1wi8_A EIF-4B, eukaryotic tran 99.6 2.7E-14 9.3E-19 117.0 12.3 82 319-403 13-95 (104)
198 2fc9_A NCL protein; structure 99.6 9.1E-15 3.1E-19 119.1 9.3 81 216-300 11-92 (101)
199 3q2s_C Cleavage and polyadenyl 99.6 5.8E-15 2E-19 138.8 9.2 81 219-299 67-150 (229)
200 2dng_A Eukaryotic translation 99.6 3.9E-14 1.3E-18 115.8 13.0 81 319-402 13-93 (103)
201 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.2E-14 1.8E-18 115.1 13.7 82 318-402 12-93 (103)
202 2dnh_A Bruno-like 5, RNA bindi 99.6 3.3E-14 1.1E-18 116.8 12.5 83 319-403 13-98 (105)
203 2cq3_A RNA-binding protein 9; 99.6 6.6E-14 2.3E-18 114.5 14.2 83 318-403 12-94 (103)
204 3p5t_L Cleavage and polyadenyl 99.6 2.7E-15 9.2E-20 119.4 5.6 80 322-402 2-83 (90)
205 2khc_A Testis-specific RNP-typ 99.6 2.1E-14 7E-19 120.7 11.4 81 318-399 37-117 (118)
206 2cpe_A RNA-binding protein EWS 99.6 3.4E-14 1.2E-18 118.4 12.3 84 319-403 13-104 (113)
207 2cq1_A PTB-like protein L; RRM 99.6 2E-14 6.8E-19 116.0 10.4 81 495-586 12-94 (101)
208 3s7r_A Heterogeneous nuclear r 99.6 3.2E-14 1.1E-18 112.4 11.5 78 320-399 10-87 (87)
209 2dgp_A Bruno-like 4, RNA bindi 99.6 1.8E-14 6.3E-19 118.5 10.4 83 319-402 11-96 (106)
210 1x4c_A Splicing factor, argini 99.6 2.5E-14 8.5E-19 118.0 11.2 77 217-300 12-94 (108)
211 2jvr_A Nucleolar protein 3; RN 99.5 6.7E-15 2.3E-19 120.9 7.6 78 218-299 26-105 (111)
212 4a8x_A RNA-binding protein wit 99.5 2E-14 6.9E-19 113.9 10.2 80 321-401 4-84 (88)
213 2dgu_A Heterogeneous nuclear r 99.5 2.9E-14 9.9E-19 116.5 11.4 78 217-302 8-86 (103)
214 2dha_A FLJ20171 protein; RRM d 99.5 3E-15 1E-19 125.5 5.5 79 219-298 22-104 (123)
215 2div_A TRNA selenocysteine ass 99.5 1.4E-14 4.8E-19 117.6 9.4 81 320-401 8-93 (99)
216 1wex_A Hypothetical protein (r 99.5 2.4E-14 8E-19 116.4 10.6 81 495-586 12-94 (104)
217 2fy1_A RNA-binding motif prote 99.5 3.3E-14 1.1E-18 118.7 11.8 81 321-403 7-87 (116)
218 2cq1_A PTB-like protein L; RRM 99.5 7.4E-14 2.5E-18 112.7 13.2 80 318-403 12-92 (101)
219 2ek1_A RNA-binding protein 12; 99.5 8.3E-15 2.8E-19 118.0 7.6 80 320-400 14-93 (95)
220 2kxn_B Transformer-2 protein h 99.5 1.6E-14 5.4E-19 122.9 9.7 83 319-402 44-126 (129)
221 2dh8_A DAZ-associated protein 99.5 3.4E-14 1.2E-18 116.6 11.3 84 318-403 13-96 (105)
222 2ad9_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 119.2 9.5 82 494-586 27-110 (119)
223 1x4d_A Matrin 3; structural ge 99.5 1.8E-14 6.2E-19 116.1 9.3 79 495-584 12-93 (102)
224 2cpj_A Non-POU domain-containi 99.5 2.8E-14 9.5E-19 115.7 10.4 78 217-300 12-90 (99)
225 1x4g_A Nucleolysin TIAR; struc 99.5 2.4E-14 8.2E-19 118.4 10.2 78 218-301 23-101 (109)
226 2hgn_A Heterogeneous nuclear r 99.5 1.7E-15 5.9E-20 129.7 3.3 81 217-299 43-123 (139)
227 3ucg_A Polyadenylate-binding p 99.5 3E-14 1E-18 113.1 10.2 78 322-401 7-84 (89)
228 3ex7_B RNA-binding protein 8A; 99.5 2.3E-14 7.7E-19 122.0 10.1 84 319-403 20-103 (126)
229 2e5j_A Methenyltetrahydrofolat 99.5 2.2E-14 7.4E-19 115.9 9.4 79 216-299 15-94 (97)
230 2j8a_A Histone-lysine N-methyl 99.5 1.7E-14 5.8E-19 117.8 8.7 77 221-297 3-94 (136)
231 1why_A Hypothetical protein ri 99.5 3.2E-14 1.1E-18 114.9 10.4 77 217-299 14-93 (97)
232 2fc8_A NCL protein; structure 99.5 2.2E-14 7.4E-19 117.1 9.4 82 216-300 11-93 (102)
233 2cpx_A Hypothetical protein FL 99.5 4.9E-15 1.7E-19 123.9 5.6 81 217-301 22-107 (115)
234 2e5g_A U6 snRNA-specific termi 99.5 3.6E-14 1.2E-18 113.8 10.3 78 218-300 6-83 (94)
235 2dgw_A Probable RNA-binding pr 99.5 1E-13 3.4E-18 110.5 12.8 79 320-402 9-87 (91)
236 2ytc_A PRE-mRNA-splicing facto 99.5 2.6E-14 8.8E-19 112.4 9.0 74 217-296 9-84 (85)
237 2f3j_A RNA and export factor b 99.5 2.4E-14 8.1E-19 128.9 10.0 83 217-300 85-168 (177)
238 2jvo_A Nucleolar protein 3; nu 99.5 2.5E-14 8.4E-19 117.7 9.1 76 216-299 27-103 (108)
239 1nu4_A U1A RNA binding domain; 99.5 9.1E-15 3.1E-19 118.2 6.4 81 217-300 5-90 (97)
240 2diu_A KIAA0430 protein; struc 99.5 5.4E-14 1.8E-18 108.5 10.2 76 219-304 7-89 (96)
241 1s79_A Lupus LA protein; RRM, 99.5 1.9E-14 6.6E-19 116.9 8.2 78 321-401 11-88 (103)
242 2cqg_A TDP-43, TAR DNA-binding 99.5 1.6E-13 5.5E-18 112.1 13.8 83 319-404 13-95 (103)
243 1jmt_A Splicing factor U2AF 35 99.5 2.6E-14 9E-19 116.3 9.0 84 498-581 1-104 (104)
244 2cpi_A CCR4-NOT transcription 99.5 6.3E-14 2.1E-18 116.1 11.4 83 320-403 14-102 (111)
245 1u6f_A Tcubp1, RNA-binding pro 99.5 1.2E-13 4E-18 119.7 13.5 85 318-403 39-123 (139)
246 2dgv_A HnRNP M, heterogeneous 99.5 5.1E-14 1.7E-18 112.5 10.4 80 320-402 7-86 (92)
247 2la4_A Nuclear and cytoplasmic 99.5 3E-14 1E-18 116.1 9.1 74 219-298 26-100 (101)
248 1x4f_A Matrin 3; structural ge 99.5 1.2E-14 3.9E-19 118.9 6.6 78 217-300 22-103 (112)
249 2la4_A Nuclear and cytoplasmic 99.5 1.7E-14 5.7E-19 117.6 7.6 77 495-582 24-100 (101)
250 2dgx_A KIAA0430 protein; RRM d 99.5 8.3E-14 2.8E-18 112.1 11.6 78 321-402 9-90 (96)
251 2m2b_A RNA-binding protein 10; 99.5 3E-14 1E-18 121.9 9.6 84 318-402 20-108 (131)
252 3n9u_C Cleavage and polyadenyl 99.5 4E-14 1.4E-18 124.5 10.5 80 321-401 55-136 (156)
253 2xnq_A Nuclear polyadenylated 99.5 4.6E-14 1.6E-18 113.7 9.9 75 216-298 18-94 (97)
254 1x4f_A Matrin 3; structural ge 99.5 4.4E-14 1.5E-18 115.4 9.8 81 495-586 22-105 (112)
255 2dhg_A TRNA selenocysteine ass 99.5 4.3E-14 1.5E-18 115.8 9.8 82 320-403 8-91 (104)
256 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.4E-14 2.9E-18 120.9 12.2 81 318-399 60-140 (140)
257 2err_A Ataxin-2-binding protei 99.5 6.2E-14 2.1E-18 115.7 10.7 81 318-401 26-106 (109)
258 2lcw_A RNA-binding protein FUS 99.3 1.1E-15 3.6E-20 128.1 0.0 85 218-302 5-98 (116)
259 3zzy_A Polypyrimidine tract-bi 99.5 6.6E-14 2.2E-18 117.2 10.8 81 500-590 30-113 (130)
260 2dnp_A RNA-binding protein 14; 99.5 5.4E-14 1.9E-18 111.8 9.9 76 216-299 5-81 (90)
261 2cq4_A RNA binding motif prote 99.5 5.1E-14 1.8E-18 117.4 10.1 79 321-401 25-103 (114)
262 2kt5_A RNA and export factor-b 99.5 2.2E-13 7.6E-18 115.4 14.1 83 319-403 33-115 (124)
263 2hgl_A HNRPF protein, heteroge 99.5 3.2E-14 1.1E-18 121.4 8.8 78 320-400 43-123 (136)
264 1whx_A Hypothetical protein ri 99.5 3.7E-14 1.2E-18 117.4 8.9 80 497-587 9-88 (111)
265 1x4e_A RNA binding motif, sing 99.5 8.7E-15 3E-19 115.1 4.9 78 321-399 5-82 (85)
266 2cpd_A Apobec-1 stimulating pr 99.5 1.3E-13 4.3E-18 111.8 11.8 77 216-300 11-90 (99)
267 1p1t_A Cleavage stimulation fa 99.5 3E-14 1E-18 116.8 8.0 80 321-401 8-87 (104)
268 3pgw_S U1-70K; protein-RNA com 99.5 6E-14 2.1E-18 144.6 12.2 83 218-300 100-183 (437)
269 1x4a_A Splicing factor, argini 99.5 2.1E-13 7.3E-18 112.7 13.2 81 318-402 19-99 (109)
270 2rs2_A Musashi-1, RNA-binding 99.5 9.1E-14 3.1E-18 114.6 10.9 80 321-402 25-104 (109)
271 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2E-14 6.7E-19 116.8 6.8 79 320-401 18-97 (100)
272 1why_A Hypothetical protein ri 99.5 6.5E-14 2.2E-18 113.1 9.8 78 495-583 14-93 (97)
273 2dgt_A RNA-binding protein 30; 99.5 8.8E-14 3E-18 111.1 10.5 76 217-300 7-83 (92)
274 2xnq_A Nuclear polyadenylated 99.5 9.3E-14 3.2E-18 111.9 10.6 77 494-583 18-95 (97)
275 1wg5_A Heterogeneous nuclear r 99.5 1E-13 3.5E-18 113.3 11.0 81 319-402 13-94 (104)
276 2jvo_A Nucleolar protein 3; nu 99.5 4.9E-14 1.7E-18 115.9 9.1 78 494-584 27-104 (108)
277 2mss_A Protein (musashi1); RNA 99.5 2.1E-14 7.1E-19 109.9 6.4 75 323-399 1-75 (75)
278 2cpy_A RNA-binding protein 12; 99.5 7.2E-14 2.4E-18 116.4 10.1 79 320-401 14-93 (114)
279 2dgu_A Heterogeneous nuclear r 99.5 3E-13 1E-17 110.5 13.5 76 320-404 10-85 (103)
280 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.2E-13 4.1E-18 122.3 11.9 82 320-402 38-119 (156)
281 1x4c_A Splicing factor, argini 99.5 2.4E-13 8.3E-18 112.0 13.0 77 319-403 13-94 (108)
282 1fjc_A Nucleolin RBD2, protein 99.5 1.4E-14 4.8E-19 116.8 5.3 79 216-299 12-91 (96)
283 1wez_A HnRNP H', FTP-3, hetero 99.5 8.8E-14 3E-18 113.0 10.0 80 319-402 13-92 (102)
284 2kvi_A Nuclear polyadenylated 99.5 3.6E-14 1.2E-18 114.3 7.6 76 217-300 7-84 (96)
285 1whx_A Hypothetical protein ri 99.5 4.9E-14 1.7E-18 116.6 8.6 74 219-298 9-83 (111)
286 2nlw_A Eukaryotic translation 99.5 8E-14 2.7E-18 114.2 9.8 79 321-402 15-100 (105)
287 1wf1_A RNA-binding protein RAL 99.5 9.4E-14 3.2E-18 115.0 10.1 76 216-299 23-100 (110)
288 2fc9_A NCL protein; structure 99.5 3.2E-13 1.1E-17 109.9 12.9 79 319-402 13-91 (101)
289 2dnl_A Cytoplasmic polyadenyla 99.5 6.2E-14 2.1E-18 116.8 8.8 75 218-295 6-84 (114)
290 2jvr_A Nucleolar protein 3; RN 99.5 7.3E-14 2.5E-18 114.7 9.0 78 496-583 26-105 (111)
291 2dis_A Unnamed protein product 99.5 1.2E-13 4E-18 114.3 10.4 84 320-403 7-93 (109)
292 2db1_A Heterogeneous nuclear r 99.5 1.3E-13 4.3E-18 115.5 10.4 78 320-400 16-96 (118)
293 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.7E-19 124.1 4.5 122 262-401 1-122 (139)
294 2dnq_A RNA-binding protein 4B; 99.5 1.3E-13 4.6E-18 109.5 9.9 78 495-585 5-82 (90)
295 1x4b_A Heterogeneous nuclear r 99.5 1.5E-13 5.1E-18 115.0 10.7 81 321-403 27-107 (116)
296 2cqh_A IGF-II mRNA-binding pro 99.5 5.7E-14 1.9E-18 112.5 7.7 76 218-300 6-84 (93)
297 2dnn_A RNA-binding protein 12; 99.5 1.7E-13 5.8E-18 112.3 10.2 76 321-400 16-91 (109)
298 2ytc_A PRE-mRNA-splicing facto 99.5 2.5E-13 8.4E-18 106.7 10.9 75 318-399 9-84 (85)
299 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4E-18 116.5 9.5 85 495-585 26-112 (127)
300 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.6E-14 1.2E-18 109.2 5.8 76 322-399 1-76 (77)
301 1wg1_A KIAA1579 protein, homol 99.5 7.6E-14 2.6E-18 110.3 7.8 75 218-299 3-78 (88)
302 3lqv_A PRE-mRNA branch site pr 99.5 2E-13 6.8E-18 114.1 10.6 81 495-585 5-87 (115)
303 2jwn_A Embryonic polyadenylate 99.5 1.5E-13 5.2E-18 116.5 10.1 80 321-402 36-115 (124)
304 1x5o_A RNA binding motif, sing 99.5 3.8E-13 1.3E-17 112.1 12.3 80 320-401 24-111 (114)
305 1x4g_A Nucleolysin TIAR; struc 99.5 1.5E-13 5E-18 113.6 9.6 80 495-585 22-101 (109)
306 2cpj_A Non-POU domain-containi 99.5 3.5E-13 1.2E-17 109.2 11.5 78 319-403 13-90 (99)
307 2krb_A Eukaryotic translation 99.5 3.1E-14 1.1E-18 110.7 4.9 72 322-396 2-80 (81)
308 2hzc_A Splicing factor U2AF 65 99.5 9.8E-14 3.3E-18 109.6 7.8 72 218-295 4-86 (87)
309 2fc8_A NCL protein; structure 99.5 4.7E-13 1.6E-17 109.1 12.0 80 319-402 13-92 (102)
310 2e5i_A Heterogeneous nuclear r 99.5 2.8E-13 9.6E-18 113.0 10.8 83 496-589 21-108 (124)
311 3egn_A RNA-binding protein 40; 99.5 2.1E-14 7.2E-19 125.1 4.0 80 217-299 42-130 (143)
312 1nu4_A U1A RNA binding domain; 99.5 1.3E-13 4.6E-18 111.3 8.5 80 319-402 6-89 (97)
313 2e44_A Insulin-like growth fac 99.5 1.2E-13 4.2E-18 111.3 8.2 78 218-299 13-92 (96)
314 2e5j_A Methenyltetrahydrofolat 99.5 2.3E-13 7.9E-18 109.8 9.8 79 495-583 16-94 (97)
315 3d2w_A TAR DNA-binding protein 99.5 1.7E-13 5.7E-18 108.3 8.6 75 217-299 8-84 (89)
316 2ki2_A SS-DNA binding protein 99.5 2.2E-14 7.4E-19 114.2 3.4 79 322-402 2-80 (90)
317 1x5p_A Negative elongation fac 99.5 3.8E-13 1.3E-17 108.5 10.8 76 217-300 12-88 (97)
318 2dgt_A RNA-binding protein 30; 99.5 3.7E-13 1.3E-17 107.4 10.6 77 495-584 7-83 (92)
319 2diu_A KIAA0430 protein; struc 99.5 1.5E-13 5.3E-18 105.9 7.9 78 496-584 6-85 (96)
320 2cq2_A Hypothetical protein LO 99.5 1.6E-13 5.6E-18 112.1 8.4 81 495-586 22-109 (114)
321 3beg_B Splicing factor, argini 99.4 1.2E-13 4.2E-18 115.1 7.8 73 218-297 14-92 (115)
322 1wf1_A RNA-binding protein RAL 99.4 3.5E-13 1.2E-17 111.5 10.3 76 496-584 25-101 (110)
323 2kvi_A Nuclear polyadenylated 99.4 1.6E-13 5.3E-18 110.5 7.9 76 495-583 7-83 (96)
324 1sjr_A Polypyrimidine tract-bi 99.4 3.2E-13 1.1E-17 117.4 10.3 80 499-588 47-129 (164)
325 1wel_A RNA-binding protein 12; 99.4 1.1E-13 3.7E-18 117.3 7.1 80 320-401 24-103 (124)
326 2dnp_A RNA-binding protein 14; 99.4 3.7E-13 1.3E-17 106.9 9.6 77 495-584 6-82 (90)
327 2hvz_A Splicing factor, argini 99.4 1.8E-13 6.1E-18 111.4 7.8 75 500-584 2-76 (101)
328 2cpx_A Hypothetical protein FL 99.4 3.4E-13 1.2E-17 112.6 9.7 82 494-585 21-107 (115)
329 2cpd_A Apobec-1 stimulating pr 99.4 6.5E-13 2.2E-17 107.6 11.0 77 495-584 12-90 (99)
330 1iqt_A AUF1, heterogeneous nuc 99.4 8E-14 2.7E-18 106.6 5.1 75 323-399 1-75 (75)
331 2e5i_A Heterogeneous nuclear r 99.4 6E-13 2.1E-17 111.0 10.5 74 221-300 26-103 (124)
332 3q2s_C Cleavage and polyadenyl 99.4 1.9E-13 6.5E-18 128.5 7.9 80 321-401 68-149 (229)
333 1sjr_A Polypyrimidine tract-bi 99.4 3.7E-13 1.3E-17 117.0 9.0 78 219-300 45-125 (164)
334 2j8a_A Histone-lysine N-methyl 99.4 3.6E-13 1.2E-17 110.0 8.3 78 322-400 3-94 (136)
335 1wg1_A KIAA1579 protein, homol 99.4 3.3E-13 1.1E-17 106.6 8.0 78 497-586 4-81 (88)
336 1fjc_A Nucleolin RBD2, protein 99.4 4.4E-13 1.5E-17 108.0 8.8 79 495-583 13-91 (96)
337 2lmi_A GRSF-1, G-rich sequence 99.4 1.6E-13 5.6E-18 112.8 6.1 77 321-400 11-90 (107)
338 2pe8_A Splicing factor 45; RRM 99.4 9.8E-13 3.3E-17 107.0 10.6 80 320-400 7-92 (105)
339 3zzy_A Polypyrimidine tract-bi 99.4 1.7E-12 5.9E-17 108.6 12.1 76 322-403 29-107 (130)
340 1wf0_A TDP-43, TAR DNA-binding 99.4 1.7E-13 5.9E-18 108.3 5.8 76 219-300 4-79 (88)
341 2xs2_A Deleted in azoospermia- 99.4 3E-13 1E-17 110.3 7.3 79 321-403 9-87 (102)
342 2f3j_A RNA and export factor b 99.4 5E-13 1.7E-17 120.2 9.3 79 321-401 88-166 (177)
343 2cq2_A Hypothetical protein LO 99.4 7.3E-13 2.5E-17 108.2 9.4 76 320-402 24-106 (114)
344 2e44_A Insulin-like growth fac 99.4 7.8E-13 2.7E-17 106.5 9.3 78 320-402 14-92 (96)
345 2voo_A Lupus LA protein; RNA-b 99.4 5.7E-13 2E-17 121.7 9.4 78 220-298 109-186 (193)
346 2cqh_A IGF-II mRNA-binding pro 99.4 3.2E-13 1.1E-17 108.0 6.9 79 495-585 5-85 (93)
347 1x5p_A Negative elongation fac 99.4 1.7E-12 6E-17 104.6 11.2 80 495-587 12-91 (97)
348 1fj7_A Nucleolin RBD1, protein 99.4 1.6E-13 5.3E-18 111.8 4.2 79 321-402 17-95 (101)
349 2hgm_A HNRPF protein, heteroge 99.4 6.9E-13 2.4E-17 111.2 7.9 77 320-400 41-119 (126)
350 2bz2_A Negative elongation fac 99.4 1E-12 3.5E-17 110.2 8.4 76 217-300 36-112 (121)
351 2dha_A FLJ20171 protein; RRM d 99.4 5.7E-13 2E-17 111.5 6.8 77 321-400 23-103 (123)
352 2lcw_A RNA-binding protein FUS 99.1 5E-14 1.7E-18 117.9 0.0 81 321-402 7-95 (116)
353 3d2w_A TAR DNA-binding protein 99.4 2.3E-12 8E-17 101.7 9.3 76 495-584 8-85 (89)
354 3beg_B Splicing factor, argini 99.4 1.1E-12 3.7E-17 109.3 7.7 74 497-582 15-93 (115)
355 2dnl_A Cytoplasmic polyadenyla 99.4 2E-12 7E-17 107.5 9.3 75 321-399 8-85 (114)
356 2e5g_A U6 snRNA-specific termi 99.4 4E-12 1.4E-16 101.8 10.5 75 321-402 8-82 (94)
357 3egn_A RNA-binding protein 40; 99.4 3E-12 1E-16 111.3 10.5 79 495-583 42-130 (143)
358 3v4m_A Splicing factor U2AF 65 99.3 3.2E-12 1.1E-16 104.0 9.7 81 319-400 3-95 (105)
359 2bz2_A Negative elongation fac 99.3 2.4E-12 8.4E-17 107.9 8.7 80 495-587 36-115 (121)
360 3u1l_A PRE-mRNA-splicing facto 99.3 2E-12 7E-17 120.4 7.9 79 217-301 131-231 (240)
361 2hzc_A Splicing factor U2AF 65 99.3 5E-12 1.7E-16 99.6 8.4 72 496-579 4-86 (87)
362 2voo_A Lupus LA protein; RNA-b 99.3 1.2E-11 3.9E-16 113.1 10.3 79 322-403 110-188 (193)
363 3ue2_A Poly(U)-binding-splicin 99.3 1.2E-11 4.1E-16 102.5 9.5 79 321-400 20-107 (118)
364 1wf0_A TDP-43, TAR DNA-binding 99.3 4.7E-12 1.6E-16 100.0 6.3 79 496-586 3-81 (88)
365 2dit_A HIV TAT specific factor 99.3 5.9E-11 2E-15 98.2 12.5 80 319-403 13-103 (112)
366 3u1l_A PRE-mRNA-splicing facto 99.2 1.3E-11 4.6E-16 114.9 7.8 87 495-584 131-230 (240)
367 1jmt_A Splicing factor U2AF 35 99.2 3.4E-12 1.2E-16 103.7 3.2 71 225-296 20-103 (104)
368 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.2E-10 4E-15 93.3 10.0 62 522-585 31-92 (100)
369 2dnr_A Synaptojanin-1; RRM dom 99.2 1.2E-10 4.2E-15 89.0 9.4 83 495-583 4-86 (91)
370 3dxb_A Thioredoxin N-terminall 99.2 8.6E-11 2.9E-15 110.4 9.6 89 495-588 121-218 (222)
371 3s6e_A RNA-binding protein 39; 99.1 2.5E-10 8.4E-15 93.9 10.6 75 321-400 7-91 (114)
372 3tht_A Alkylated DNA repair pr 99.1 1.8E-10 6.1E-15 113.4 9.2 80 494-582 14-98 (345)
373 2d9o_A DNAJ (HSP40) homolog, s 99.1 9.1E-10 3.1E-14 88.1 11.7 75 220-300 10-91 (100)
374 3tht_A Alkylated DNA repair pr 99.0 1.2E-09 4E-14 107.6 9.9 77 318-400 15-97 (345)
375 1ufw_A Synaptojanin 2; RNP dom 98.9 1.6E-09 5.5E-14 83.1 6.2 82 494-581 11-93 (95)
376 1owx_A Lupus LA protein, SS-B, 98.8 1.7E-08 5.8E-13 82.8 9.7 78 495-583 15-96 (121)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 3.6E-08 1.2E-12 75.3 8.9 74 318-401 4-85 (91)
378 1owx_A Lupus LA protein, SS-B, 98.7 3.7E-08 1.3E-12 80.8 9.0 76 318-399 15-93 (121)
379 1ufw_A Synaptojanin 2; RNP dom 98.6 1E-07 3.5E-12 73.1 7.3 71 219-297 14-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.5 2E-07 7E-12 87.2 9.5 78 322-400 125-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 7.7E-07 2.6E-11 69.5 9.0 76 496-582 19-99 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.4 2E-06 6.8E-11 67.2 9.2 71 322-399 22-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.9 0.00012 4.1E-09 56.9 10.1 88 219-334 7-99 (104)
384 1wey_A Calcipressin 1; structu 97.8 5.9E-05 2E-09 59.0 7.0 78 499-582 6-83 (104)
385 1wwh_A Nucleoporin 35, nucleop 97.3 0.0011 3.8E-08 53.4 8.7 73 498-583 24-97 (119)
386 1wey_A Calcipressin 1; structu 97.2 0.0026 8.8E-08 49.7 9.6 74 321-401 5-83 (104)
387 3p3d_A Nucleoporin 53; structu 97.1 0.00046 1.6E-08 56.3 4.3 77 500-588 9-104 (132)
388 1whv_A Poly(A)-specific ribonu 97.0 0.0043 1.5E-07 47.5 9.2 54 322-384 17-70 (100)
389 1uw4_A UPF3X; nonsense mediate 96.9 0.0055 1.9E-07 47.1 8.8 70 322-391 2-73 (91)
390 1uw4_A UPF3X; nonsense mediate 96.7 0.009 3.1E-07 45.9 8.5 67 221-287 2-71 (91)
391 1whv_A Poly(A)-specific ribonu 96.5 0.012 4.1E-07 45.1 8.2 57 496-566 14-70 (100)
392 2dhx_A Poly (ADP-ribose) polym 96.5 0.018 6.2E-07 44.7 9.2 74 496-583 6-84 (104)
393 3ctr_A Poly(A)-specific ribonu 96.5 0.0043 1.5E-07 47.7 5.5 54 322-384 7-60 (101)
394 1wwh_A Nucleoporin 35, nucleop 96.4 0.015 5E-07 46.9 8.5 72 321-401 24-96 (119)
395 3ctr_A Poly(A)-specific ribonu 96.0 0.0087 3E-07 46.0 4.9 54 499-566 7-60 (101)
396 2l08_A Regulator of nonsense t 95.3 0.028 9.6E-07 43.4 5.5 69 322-390 10-80 (97)
397 3p3d_A Nucleoporin 53; structu 94.4 0.064 2.2E-06 43.7 5.7 76 322-400 8-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 93.9 0.031 1.1E-06 56.9 3.4 57 221-283 54-110 (464)
399 2l08_A Regulator of nonsense t 93.3 0.053 1.8E-06 41.8 3.1 68 220-287 9-79 (97)
400 3pq1_A Poly(A) RNA polymerase; 92.0 0.083 2.8E-06 53.7 3.3 53 322-380 54-106 (464)
401 3d45_A Poly(A)-specific ribonu 78.1 7.3 0.00025 40.3 9.2 56 321-385 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 66.5 16 0.00054 37.8 8.4 55 498-566 440-494 (507)
403 4eyt_A Telomerase associated p 51.0 72 0.0025 23.5 9.4 57 497-566 11-67 (129)
404 4eyt_A Telomerase associated p 45.2 90 0.0031 23.0 9.4 68 322-397 13-86 (129)
405 3lpe_A Putative transcription 38.1 67 0.0023 24.2 5.7 35 535-569 40-74 (92)
406 2okq_A Hypothetical protein YB 34.7 64 0.0022 26.3 5.2 70 509-578 34-133 (141)
407 3h7h_B Transcription elongatio 32.6 44 0.0015 26.1 3.9 36 534-569 40-75 (106)
408 4e8u_A Putative uncharacterize 29.6 51 0.0017 28.2 4.0 88 498-587 12-118 (172)
409 4e8u_A Putative uncharacterize 28.8 1.1E+02 0.0038 26.1 6.0 48 323-373 14-72 (172)
410 2fiu_A Conserved hypothetical 24.7 1.9E+02 0.0066 21.9 6.4 51 512-562 14-71 (99)
411 2w7a_A LINE-1 ORF1P; RNA-bindi 24.3 2E+02 0.0068 22.1 6.1 78 499-578 4-98 (100)
412 3h7h_B Transcription elongatio 23.1 66 0.0023 25.0 3.3 34 347-385 40-73 (106)
413 4hhu_A OR280; engineered prote 23.1 2.7E+02 0.0091 21.6 8.0 59 500-565 44-104 (170)
414 3lpe_A Putative transcription 21.8 1.9E+02 0.0067 21.5 5.8 34 347-385 39-72 (92)
415 3lo3_A Uncharacterized conserv 21.1 2.6E+02 0.009 20.8 7.0 52 512-563 13-71 (94)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.3e-39 Score=319.89 Aligned_cols=240 Identities=24% Similarity=0.305 Sum_probs=213.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
+.++|||+|||+.+|+++|.++|..|| |..|.+ +.++|||||+|.+.++|..|+ .+||..|.|+.|.|.+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 458999999999999999999999999 988887 457899999999999999999 699999999999998743
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
. ..+|||+|||+.+++++|.++|..||.|..|.++.+..++.++|||||+|.+.++|.
T Consensus 94 ~----------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 94 T----------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp C----------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred C----------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 1 269999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCccc
Q 007742 378 AAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVN 457 (591)
Q Consensus 378 ~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (591)
.|+..|+|. .|.|+.|.|.++......
T Consensus 152 ~A~~~l~~~-~~~g~~i~v~~a~~~~~~---------------------------------------------------- 178 (284)
T 3smz_A 152 RAKSDLLGK-PLGPRTLYVHWTDAGQLT---------------------------------------------------- 178 (284)
T ss_dssp HHHHHHTTC-EETTEECEEEECCGGGCC----------------------------------------------------
T ss_pred HHHHHhCCC-EeCCcEEEEEECCCCCCC----------------------------------------------------
Confidence 999999996 699999999987431000
Q ss_pred CccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCC-CCchhhhhHHHHHHHHhccccceE
Q 007742 458 GSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAME-TDPDFDLEIQGDVEEECSKYGRVK 536 (591)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~-~~~~~~~~~~edl~~~f~~~G~V~ 536 (591)
....+..+|+|.|| |..+ + +++|.++|+.||.|.
T Consensus 179 -----------------------------------~~~~~~~~l~v~nl--p~~~~~--------~~~l~~~f~~~G~i~ 213 (284)
T 3smz_A 179 -----------------------------------PALLHSRCLCVDRL--PPGFND--------VDALCRALSAVHSPT 213 (284)
T ss_dssp -----------------------------------TTTTSCSEEEEECC--CTTCCC--------HHHHHHHTCSSSCCS
T ss_pred -----------------------------------cccCCccEEEEecC--CcccCC--------HHHHHHHhhCCCCeE
Confidence 01134568999999 7774 6 899999999999999
Q ss_pred EEEEecC----CCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhh
Q 007742 537 HIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 585 (591)
Q Consensus 537 ~v~l~~~----~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 585 (591)
.+.|..+ ++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.+...
T Consensus 214 ~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 214 FCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9988654 478999999999999999999999999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.5e-39 Score=322.57 Aligned_cols=246 Identities=18% Similarity=0.284 Sum_probs=208.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|.++|..||.|..|.++.+..+ ++|||||+|.+.++|..|+.++|..+.|+.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 345799999999999999999999999999999999998754 589999999999999999999999999999999875
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 297 EAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
. ..+|||+|||+.+++++|.++|..|| .|..|.++.+. .+.++|||||+|.+.++
T Consensus 116 ~-----------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 116 T-----------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKED 171 (292)
T ss_dssp C-----------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHH
T ss_pred C-----------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHH
Confidence 2 27999999999999999999999999 99999998876 47789999999999999
Q ss_pred HHHHHHHhcCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCc
Q 007742 376 AKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPA 455 (591)
Q Consensus 376 a~~a~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (591)
|..|+..|+|. .|.|+.|.|.++.+.......
T Consensus 172 a~~A~~~l~g~-~~~g~~l~v~~a~~~~~~~~~----------------------------------------------- 203 (292)
T 2ghp_A 172 ARYCVEKLNGL-KIEGYTLVTKVSNPLEKSKRT----------------------------------------------- 203 (292)
T ss_dssp HHHHHHHHTTC-EETTEECEEEECCCC-----------------------------------------------------
T ss_pred HHHHHHHhCCC-EeCCcEEEEEECCCCcccccc-----------------------------------------------
Confidence 99999999996 699999999987532110000
Q ss_pred ccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCC-CCCchhhhhHHHHHHHHhccccc
Q 007742 456 VNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGR 534 (591)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~-~~~~~~~~~~~edl~~~f~~~G~ 534 (591)
.....+..+|+|.|| |.. ++ +++|.++|+.||.
T Consensus 204 ------------------------------------~~~~~~~~~l~v~nl--p~~~~t--------~~~l~~~F~~~G~ 237 (292)
T 2ghp_A 204 ------------------------------------DSATLEGREIMIRNL--STELLD--------ENLLRESFEGFGS 237 (292)
T ss_dssp ---------------------------------------CCTTTEEEEEEE--CTTTCC--------HHHHHHHHGGGSC
T ss_pred ------------------------------------cccCCCCceEEEECC--CcccCC--------HHHHHHHHhccCC
Confidence 001245568999999 877 77 8999999999999
Q ss_pred eEEEEEec------CCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 535 VKHIYVDK------RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 535 V~~v~l~~------~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
|..|.|.. .++|+|||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 238 v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 238 IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99998853 35799999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.1e-30 Score=245.72 Aligned_cols=168 Identities=26% Similarity=0.405 Sum_probs=149.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|+++|.+||.|.+|.|+.++.+|.++|||||+|.+.++|..|| .+|+..+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 445689999999999999999999999999999999999999999999999999999999999 6999999999999988
Q ss_pred CccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
+.......... ..+|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++
T Consensus 92 ~~~~~~~~~~~--------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 92 SQRDPSLRKSG--------------VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCCTHHHHHC--------------TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHH
T ss_pred ccccccccccc--------------cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHH
Confidence 76543322221 2689999999999999999999999999999999874 4579999999999999
Q ss_pred HHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 376 AKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 376 a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
|.+|+..|||. .|.|+.|.|.++.+
T Consensus 156 a~~Ai~~lng~-~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 156 AERAIEKMNGM-LLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHTTC-EETTEECEEEECCC
T ss_pred HHHHHHHhCCC-EECCEEEEEEEcCC
Confidence 99999999996 69999999998754
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=8.4e-30 Score=236.91 Aligned_cols=176 Identities=21% Similarity=0.392 Sum_probs=151.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34569999999999999999999999999999999999999999999999999999999999988999999999999987
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHH
Q 007742 297 EAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376 (591)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a 376 (591)
......... .......+|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|
T Consensus 90 ~~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 90 VSREDSQRP----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CC---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCccccccc----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 654322111 1122348999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHhcCCeeeCCeEEEEEEecCCCC
Q 007742 377 KAAQSALNGKLEIVGRTLKVSSVTDHVG 404 (591)
Q Consensus 377 ~~a~~~l~g~~~~~g~~l~v~~~~~~~~ 404 (591)
.+|+.. +|. .|.|+.|.|.++.+...
T Consensus 160 ~~A~~~-~~~-~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 160 DKIVIQ-KYH-TVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HHHHHC-SCC-EETTEECEEEECC----
T ss_pred HHHHHh-CCc-EECCEEEEEEecCChhH
Confidence 999965 775 79999999999876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=228.14 Aligned_cols=164 Identities=21% Similarity=0.469 Sum_probs=149.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
++|||+|||+.+|+++|.++|..||.|..|.++.++. |.++|||||+|.+.++|..|+ .++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 779999999999999999999 79999999999999987543
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHH
Q 007742 300 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 379 (591)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a 379 (591)
.. .......+|+|+|||..+++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|..|
T Consensus 80 ~~--------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 80 QQ--------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CC--------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred CC--------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 32 1122347999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHhcCCeeeCCeEEEEEEec
Q 007742 380 QSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 380 ~~~l~g~~~~~g~~l~v~~~~ 400 (591)
+..|||. .|.|+.|.|.+++
T Consensus 146 ~~~l~g~-~~~g~~i~v~~a~ 165 (166)
T 3md3_A 146 MDSMQGQ-DLNGRPLRINWAA 165 (166)
T ss_dssp HHHHTTC-EETTEECEEEESC
T ss_pred HHHhCCC-ccCCcEEEEEecC
Confidence 9999997 6999999999874
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.4e-29 Score=229.17 Aligned_cols=164 Identities=27% Similarity=0.430 Sum_probs=150.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
+.++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|+ .++|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3589999999999999999999999999999999999999999999999999999999999 599999999999999886
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 377 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~ 377 (591)
+... .....+|+|.|||..+++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.
T Consensus 82 ~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGE----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCSS----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCcc----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 4322 122479999999999999999999999999999999998878999999999999999999
Q ss_pred HHHHHhcCCeeeCC--eEEEEEEe
Q 007742 378 AAQSALNGKLEIVG--RTLKVSSV 399 (591)
Q Consensus 378 ~a~~~l~g~~~~~g--~~l~v~~~ 399 (591)
.|+..|||. .|.| ++|.|.++
T Consensus 146 ~A~~~l~g~-~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNV-IPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTC-CCTTCSSCCEEEEC
T ss_pred HHHHHhcCC-EecCCCeEEEEEeC
Confidence 999999997 6877 99999874
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.8e-29 Score=226.91 Aligned_cols=163 Identities=26% Similarity=0.461 Sum_probs=149.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
.++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|+ .++|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 489999999999999999999999999999999999989999999999999999999999 5999999999999998865
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
.... ....+|+|+|||..+++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|..
T Consensus 82 ~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 SSAS----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCGG----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccc----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 4321 123789999999999999999999999999999999988789999999999999999999
Q ss_pred HHHHhcCCeeeCCeE--EEEEEe
Q 007742 379 AQSALNGKLEIVGRT--LKVSSV 399 (591)
Q Consensus 379 a~~~l~g~~~~~g~~--l~v~~~ 399 (591)
|+..|||. .|.|+. |.|.|+
T Consensus 146 A~~~l~g~-~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQ-KPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTC-CCTTCSSCCEEEEC
T ss_pred HHHHhcCC-ccCCCccceEEEeC
Confidence 99999997 699964 888764
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.1e-29 Score=229.59 Aligned_cols=164 Identities=23% Similarity=0.435 Sum_probs=149.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
++++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|+. ++..+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 45899999999999999999999999999999999999999999999999999999999997 36789999999988765
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
...... ..+|||+|||..+++++|.++|++||.|..|.++.+..++.++|||||+|.+.++|..
T Consensus 81 ~~~~~~----------------~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 RDEQDK----------------TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp HHHHHH----------------CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred hhhccC----------------CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 433211 2689999999999999999999999999999999988789999999999999999999
Q ss_pred HHHHhcCCeeeCCeEEEEEEecC
Q 007742 379 AQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 379 a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
|++ ++|. .|.|+.|.|.++.+
T Consensus 145 A~~-~~~~-~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 145 VCQ-NKFI-DFKDRKIEIKRAEP 165 (167)
T ss_dssp HHH-CSEE-CSSSSCEEEEECCC
T ss_pred HHh-CCCE-EeCCeEEEEeecCC
Confidence 996 8884 79999999999865
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.5e-29 Score=237.52 Aligned_cols=177 Identities=19% Similarity=0.374 Sum_probs=151.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~~~~ 298 (591)
.++|||+|||+.+|+++|+++|..||.|..|.++.+..+|.++|||||+|.+.++|..||. |++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4899999999999999999999999999999999999899999999999999999999995 999999999999987654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 378 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~ 378 (591)
........... ........+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|..
T Consensus 108 ~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 108 IGQAQPIIDQL-----AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CGGGHHHHHHH-----HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ccccchhhhhh-----hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 33211100000 0001123799999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHhcCCeeeCCeEEEEEEecCC
Q 007742 379 AQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 379 a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
|+..|||. .|.|+.|.|.++...
T Consensus 183 A~~~l~g~-~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 183 AVSSMNLF-DLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHTTC-BCSSSBCEEEECSSC
T ss_pred HHHHccCC-EeCCcEEEEEEecCC
Confidence 99999996 699999999998754
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.6e-28 Score=222.38 Aligned_cols=165 Identities=29% Similarity=0.489 Sum_probs=144.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--CccceEEEEecCcchHHHHH-HHcCCccC---CeeEE
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR--RSKGVGYIEFYDVMSVPMAI-ALSGQLLL---GQPVM 292 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g--~~~G~afV~F~~~e~A~~Al-~l~g~~i~---g~~i~ 292 (591)
++++|||+|||+.+|+++|.++|.+||.|..|.++.+..+| .++|||||+|.+.++|..|+ .|++..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999887 89999999999999999999 59998876 57777
Q ss_pred eccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCC
Q 007742 293 VKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 372 (591)
Q Consensus 293 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~ 372 (591)
+.++...... .....+|||+|||..+++++|+++|++||.|..|.++.+. ++.++|||||+|.+
T Consensus 82 ~~~~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 82 MKPADSEKNN---------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTT 145 (175)
T ss_dssp EEECGGGCCS---------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred Eccccccccc---------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECC
Confidence 7766543321 1124799999999999999999999999999999999886 68899999999999
Q ss_pred HHHHHHHHHHhcCCeeeC--CeEEEEEEe
Q 007742 373 LEHAKAAQSALNGKLEIV--GRTLKVSSV 399 (591)
Q Consensus 373 ~~~a~~a~~~l~g~~~~~--g~~l~v~~~ 399 (591)
.++|..|+..|||...+. |++|.|.++
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 999999999999964344 499999886
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=4.5e-28 Score=227.73 Aligned_cols=166 Identities=25% Similarity=0.336 Sum_probs=145.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+.++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|..|+..|++. .+.|+.|.+.++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~-~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD-VIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh-hcCCcccccccc
Confidence 3579999999999999999999999999999999999889999999999999999999999999997 699999999876
Q ss_pred cCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCC
Q 007742 400 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 479 (591)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (591)
..... .
T Consensus 93 ~~~~~-----------------------~--------------------------------------------------- 98 (213)
T 4f02_A 93 QRDPS-----------------------L--------------------------------------------------- 98 (213)
T ss_dssp CCCTH-----------------------H---------------------------------------------------
T ss_pred ccccc-----------------------c---------------------------------------------------
Confidence 32100 0
Q ss_pred CCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC---CCeeEEEEeCCHH
Q 007742 480 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTE 556 (591)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~---~~g~afV~F~~~e 556 (591)
.......|+|.|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.+
T Consensus 99 --------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 99 --------------RKSGVGNIFIKNL--DKSID--------NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp --------------HHHCTTEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred --------------cccccccceECCc--ccccH--------HHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 0012346999999 88888 8999999999999999988543 5799999999999
Q ss_pred HHHHHHHHhcccccCCeEEEEEEeCchh
Q 007742 557 AAASAQRAMHMRWFARRLISAIFMKPED 584 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 584 (591)
+|.+|+..|||..|+|+.|.|.|+.++.
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999998653
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=9.6e-27 Score=229.15 Aligned_cols=247 Identities=15% Similarity=0.259 Sum_probs=152.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLR----KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 393 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~ 393 (591)
..++++|||+|||..+++++|+ ++|..||.|..|.|.. ++.++|||||+|.+.++|..|+..|||. .|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC-eeCCcE
Confidence 3446899999999999999966 9999999999998875 6778999999999999999999999996 799999
Q ss_pred EEEEEecCCCCCCcccccCCCCCCCCC--CCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcC
Q 007742 394 LKVSSVTDHVGTQDTAAKSADFDDDDG--GGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVV 471 (591)
Q Consensus 394 l~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (591)
|.|.++............ ....... ..............................+........... ........
T Consensus 82 l~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 158 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKG--TFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQA-PRIMHHMP 158 (282)
T ss_pred EEEEEeccCcchhhhhcC--CcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccc-ccccccCC
Confidence 999998654421111100 0000000 000000000000000000000000000000000000000000 00000000
Q ss_pred CCCCC----------------------CCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHh
Q 007742 472 GQPAV----------------------PVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEEC 529 (591)
Q Consensus 472 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f 529 (591)
|..+. ..........+.........++++|+|.|| |..++ +++|+++|
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~F 228 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL--PEETN--------ELMLSMLF 228 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCC--CCcCC--------HHHHHHHH
Confidence 00000 000000001111112234567789999999 87777 89999999
Q ss_pred ccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccC-CeEEEEEEeC
Q 007742 530 SKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFA-RRLISAIFMK 581 (591)
Q Consensus 530 ~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~-g~~l~v~~~~ 581 (591)
+.||.|..|.|....+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|++
T Consensus 229 ~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 229 NQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999999998777799999999999999999999999999 9999999986
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=8.2e-28 Score=218.42 Aligned_cols=158 Identities=26% Similarity=0.513 Sum_probs=142.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKA----G-------KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLL 287 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~ 287 (591)
+.++|||+|||+.+|+++|.++|.+| | .|..+.+. .++|||||+|.+.++|.+|+.+||..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46899999999999999999999999 6 77777664 4589999999999999999999999999
Q ss_pred CeeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEE
Q 007742 288 GQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 367 (591)
Q Consensus 288 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~ 367 (591)
|++|.|.++...... ....+|+|+|||..+++++|+++|++||.|..|.++.+..++.++|+||
T Consensus 77 g~~i~v~~~~~~~~~----------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~af 140 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL----------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 140 (172)
T ss_dssp TEECEEECCSSCCCC----------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEE
T ss_pred CceeeecCCcccCCC----------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEE
Confidence 999999876543211 1148999999999999999999999999999999999987899999999
Q ss_pred EEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 368 VQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 368 Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
|+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 141 V~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~A 171 (172)
T 2g4b_A 141 CEYVDINVTDQAIAGLNGM-QLGDKKLLVQRA 171 (172)
T ss_dssp EEESSTTHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred EEeCCHHHHHHHHHHcCCC-EECCeEEEEEeC
Confidence 9999999999999999996 699999999986
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.5e-27 Score=220.57 Aligned_cols=177 Identities=24% Similarity=0.454 Sum_probs=147.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKA----G-------KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLL 287 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~ 287 (591)
.+++|||+|||+.+|+++|.++|..| | .|..+.+ +.++|||||+|.+.++|.+||.|||..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 5666655 45689999999999999999999999999
Q ss_pred CeeEEeccCccccccccccCCC----CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcc
Q 007742 288 GQPVMVKPSEAEKNLVQSNTSA----GGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCK 363 (591)
Q Consensus 288 g~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~ 363 (591)
|+.|.|.++............. .............+|||+|||..+++++|+++|++||.|..|.++.+..++.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999876543221111100 011111222446899999999999999999999999999999999988789999
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 364 GFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 364 g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
|||||+|.+.++|..|+..|||. .|.|+.|.|.++.+.
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGM-QLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTC-EETTEECEEEESCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECCCC
Confidence 99999999999999999999996 699999999998653
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.8e-28 Score=223.46 Aligned_cols=166 Identities=20% Similarity=0.348 Sum_probs=143.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEecc
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 295 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~ 295 (591)
.....++|||+|||+.+|+++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|.+||+|||..|.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3456799999999999999999999999998766 344555678899999999999999999999999999999999998
Q ss_pred CccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
+...... ......+|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++
T Consensus 88 ~~~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 88 PKGRDSK--------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp CCCSSCS--------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHH
T ss_pred CCCcccc--------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHH
Confidence 8654321 11234899999999999999999999999988766 3478889999999999999
Q ss_pred HHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 376 AKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 376 a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
|..|+..|||. .|.|+.|.|.++.++
T Consensus 149 A~~A~~~l~g~-~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGA-EIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEE-EETTEEEEEEECSSC
T ss_pred HHHHHHHhCCC-EECCeEEEEEecCCC
Confidence 99999999995 799999999998653
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.2e-26 Score=228.78 Aligned_cols=169 Identities=22% Similarity=0.266 Sum_probs=153.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|||+|||+.+|+++|.++|..||.|..|.++.+..+|.++|||||+|.+.++|..|+ .|+|..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4589999999999999999999999999999999999999999999999999999999999 799999999999999987
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHH
Q 007742 298 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM-TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 376 (591)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a 376 (591)
...... ......+|||.|||..+ ++++|+++|+.||.|..|.|+.+. +|.++|+|||+|.+.++|
T Consensus 174 ~~~~~~-------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A 239 (284)
T 3smz_A 174 AGQLTP-------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMA 239 (284)
T ss_dssp GGGCCT-------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHH
T ss_pred CCCCCc-------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHH
Confidence 643221 11234899999999995 999999999999999999999886 888999999999999999
Q ss_pred HHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 377 KAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 377 ~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
..|+..|||. .|.|+.|.|.++.+.
T Consensus 240 ~~A~~~l~g~-~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 240 EEAQQQADGL-SLGGSHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHHTTC-EETTEECEEEECCSS
T ss_pred HHHHHHhCCC-ccCCeEEEEEEecCC
Confidence 9999999996 699999999998653
No 17
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-26 Score=208.99 Aligned_cols=161 Identities=22% Similarity=0.307 Sum_probs=141.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||+|||..+++++|+++|++||.|..|.++.+. .+.++|||||+|.+.++|..|+..|+|. .+.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGK-QIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCC-ccCCCeeEEEEcCC
Confidence 579999999999999999999999999999999886 5778999999999999999999999996 69999999998743
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
...
T Consensus 79 ~~~----------------------------------------------------------------------------- 81 (166)
T 3md3_A 79 SQQ----------------------------------------------------------------------------- 81 (166)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCHH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 556 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~e 556 (591)
....++.+|+|.|| |..++ +++|.++|+.||.|..+.+..+ ++|+|||+|.+.+
T Consensus 82 -----------~~~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 82 -----------SSSDDTFNLFVGDL--NVNVD--------DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp -----------CCCTTCEEEEEESC--CTTCC--------HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred -----------CCCCCCceEEECCC--CCCCC--------HHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 01234568999999 88887 8999999999999999988533 4789999999999
Q ss_pred HHHHHHHHhcccccCCeEEEEEEeCc
Q 007742 557 AAASAQRAMHMRWFARRLISAIFMKP 582 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~g~~l~v~~~~~ 582 (591)
+|.+|+..|||..|+|+.|.|.|+.+
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999999999999999999864
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=7.5e-27 Score=216.78 Aligned_cols=173 Identities=17% Similarity=0.231 Sum_probs=139.0
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 219 DQRTVFAYQMP-LKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 219 ~~~~l~V~nLp-~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
++++|||+||| +.+|+++|.++|..||.|..|.++.+ .+|||||+|.+.++|..|| .|||..+.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999865 4799999999999999999 69999999999999987
Q ss_pred cccccccccc------CC------CC-CC--------CCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCe--eEEEE
Q 007742 297 EAEKNLVQSN------TS------AG-GT--------ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPV--ELVQL 353 (591)
Q Consensus 297 ~~~~~~~~~~------~~------~~-~~--------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i--~~v~i 353 (591)
.......... .+ .. .. ......+++.+|||.|||+.+++++|+++|++||.| ..|.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6432211000 00 00 00 000112446799999999999999999999999998 88988
Q ss_pred eccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCe----EEEEEEe
Q 007742 354 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR----TLKVSSV 399 (591)
Q Consensus 354 ~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~----~l~v~~~ 399 (591)
+.+. +..+|+|||+|.+.++|..||..|||. .|.|. ++.|.++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~-~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHY-QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTC-EECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCC-CccCCCCCcceEEEec
Confidence 8764 445699999999999999999999996 68876 5655543
No 19
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=2.2e-26 Score=208.15 Aligned_cols=159 Identities=25% Similarity=0.374 Sum_probs=142.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
+++|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|..|+..|+|. .+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI-TVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC-EeCCcEEEEEecC
Confidence 489999999999999999999999999999999998888999999999999999999999999996 7999999999874
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
+..
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (168)
T 1b7f_A 82 PGG----------------------------------------------------------------------------- 84 (168)
T ss_dssp CCS-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCC-----CeeEEEEeCCH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS-----AGFVYLRFEST 555 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~-----~g~afV~F~~~ 555 (591)
...+..+|+|.|| |..++ +++|.++|+.||.|..+.+..+. +|+|||+|.+.
T Consensus 85 -------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 85 -------------ESIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp -------------STTTTCEEEEESC--CTTCC--------HHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred -------------ccCCCCCEEEeCC--CCCCC--------HHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 0123458999999 88777 89999999999999999886543 68999999999
Q ss_pred HHHHHHHHHhcccccCC--eEEEEEEe
Q 007742 556 EAAASAQRAMHMRWFAR--RLISAIFM 580 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g--~~l~v~~~ 580 (591)
++|.+|+..|||..|.| ++|.|.|+
T Consensus 142 ~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999988 99999985
No 20
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=5.1e-26 Score=205.44 Aligned_cols=159 Identities=29% Similarity=0.413 Sum_probs=141.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|..|+..|+|. .+.|+.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL-RLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC-ccCCceEEEEecC
Confidence 379999999999999999999999999999999998888999999999999999999999999996 7999999998874
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
+..
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (167)
T 1fxl_A 81 PSS----------------------------------------------------------------------------- 83 (167)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 555 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~ 555 (591)
...+..+|+|.|| |..++ +++|.++|+.||.|..+.+..+ ++|+|||+|.+.
T Consensus 84 -------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 84 -------------ASIRDANLYVSGL--PKTMT--------QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp -------------GGGTTCEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred -------------ccCCCCcEEECCC--CCcCC--------HHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 0112347999999 88777 8999999999999999988644 379999999999
Q ss_pred HHHHHHHHHhcccccCCeE--EEEEEe
Q 007742 556 EAAASAQRAMHMRWFARRL--ISAIFM 580 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g~~--l~v~~~ 580 (591)
++|.+|+..|||..|.|+. |.|.|+
T Consensus 141 ~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999965 888885
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=2.4e-26 Score=218.47 Aligned_cols=174 Identities=18% Similarity=0.293 Sum_probs=144.0
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 217 ERDQRTVFAYQMPL-KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 217 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
..++++|||+|||+ .+|+++|.++|..||.|..|.++.++ +|||||+|.+.++|.+|+ .|||..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44679999999999 99999999999999999999999764 789999999999999999 599999999999998
Q ss_pred cCccccccccccC-------------------CCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEe
Q 007742 295 PSEAEKNLVQSNT-------------------SAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLP 354 (591)
Q Consensus 295 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~ 354 (591)
++........... ...........+++.+|||+|||..+++++|+++|.+|| .|..|.++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 8765421111100 000000011234468999999999999999999999999 99999986
Q ss_pred ccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC-CeEEEEEEecC
Q 007742 355 LDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV-GRTLKVSSVTD 401 (591)
Q Consensus 355 ~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~-g~~l~v~~~~~ 401 (591)
.. .+|+|||+|.+.++|..|+..|+|. .|. |+.|.|.|+++
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRVSFSKS 227 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTC-BSSSSCBCEEEECSS
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCC-ccCCCCeEEEEEecC
Confidence 43 3789999999999999999999996 688 99999999865
No 22
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=5.2e-26 Score=223.91 Aligned_cols=175 Identities=22% Similarity=0.356 Sum_probs=143.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 217 ERDQRTVFAYQMPLKATERDVY----EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
..+.++|||+|||+.+|+++|+ ++|..||.|..|.++. +|.++|||||+|.+.++|..|+ .|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3467999999999999999966 8999999999999886 5789999999999999999999 799999999999
Q ss_pred EeccCcccccccccc---------------------------------C-------------------------------
Q 007742 292 MVKPSEAEKNLVQSN---------------------------------T------------------------------- 307 (591)
Q Consensus 292 ~v~~~~~~~~~~~~~---------------------------------~------------------------------- 307 (591)
.|.++.......... .
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 998775433200000 0
Q ss_pred --------CCCCC-----------------------CCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecc
Q 007742 308 --------SAGGT-----------------------ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD 356 (591)
Q Consensus 308 --------~~~~~-----------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~ 356 (591)
+..+. ......+.+++|||+|||..+++++|+++|+.||.|..|.|+.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 00000 00012234688999999999999999999999999999999855
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC-CeEEEEEEec
Q 007742 357 IETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV-GRTLKVSSVT 400 (591)
Q Consensus 357 ~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~-g~~l~v~~~~ 400 (591)
. +|||||+|.+.++|..|+..|||. .|. |+.|.|.|++
T Consensus 243 ~-----~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R-----HDIAFVEFDNEVQAGAARDALQGF-KITQNNAMKISFAK 281 (282)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHcCCc-EeCCCCEEEEEEec
Confidence 3 589999999999999999999996 688 9999999974
No 23
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=9.9e-26 Score=212.77 Aligned_cols=176 Identities=19% Similarity=0.383 Sum_probs=145.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|++. .|.|+.|.|.++..
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV-MLGGRNIKVGRPSN 107 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC-CCC-CCCEEECCSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC-eeCCeeEEEecCCC
Confidence 79999999999999999999999999999999998878899999999999999999999999996 69999999976542
Q ss_pred CCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCC
Q 007742 402 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 481 (591)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (591)
.... . ........
T Consensus 108 ~~~~---------------------~----~~~~~~~~------------------------------------------ 120 (216)
T 2qfj_A 108 IGQA---------------------Q----PIIDQLAE------------------------------------------ 120 (216)
T ss_dssp CGGG---------------------H----HHHHHHHH------------------------------------------
T ss_pred cccc---------------------c----hhhhhhhc------------------------------------------
Confidence 1100 0 00000000
Q ss_pred CCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCHH
Q 007742 482 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 556 (591)
Q Consensus 482 ~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~e 556 (591)
...+..+|+|.|| |..++ +++|.++|+.||.|..|.+..+ ++|+|||+|.+.+
T Consensus 121 ------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 121 ------------EARAFNRIYVASV--HQDLS--------DDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp ------------HHTTSCEEEEECC--CTTCC--------HHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ------------ccCCCcEEEEeCC--CCcCC--------HHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 0134568999999 88887 8999999999999999988654 3789999999999
Q ss_pred HHHHHHHHhcccccCCeEEEEEEeCchhhhh
Q 007742 557 AAASAQRAMHMRWFARRLISAIFMKPEDYEA 587 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 587 (591)
+|.+|+..|||..|+|+.|.|.|+.+.....
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999999999999999999998775443
No 24
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=1e-25 Score=209.17 Aligned_cols=169 Identities=20% Similarity=0.326 Sum_probs=140.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..||.. ++. .|.|+.|.|.++.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~-~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH-KVDGRVVEPKRAV 90 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC-EETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC-EECCEEeeeeccc
Confidence 48999999999999999999999999999999999988899999999999999999999954 774 7999999999874
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
.......
T Consensus 91 ~~~~~~~------------------------------------------------------------------------- 97 (196)
T 1l3k_A 91 SREDSQR------------------------------------------------------------------------- 97 (196)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred Ccccccc-------------------------------------------------------------------------
Confidence 3210000
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 555 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~ 555 (591)
.....+..+|+|.|| |..++ +++|.++|+.||.|..|.+..+ ++|+|||+|.+.
T Consensus 98 -----------~~~~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 98 -----------PGAHLTVKKIFVGGI--KEDTE--------EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp ----------------CCSEEEEECC--TTTCC--------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred -----------cccCCCcceEEEeCC--CCCCC--------HHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 001234468999999 88888 8999999999999999988643 478999999999
Q ss_pred HHHHHHHHHhcccccCCeEEEEEEeCchhhh
Q 007742 556 EAAASAQRAMHMRWFARRLISAIFMKPEDYE 586 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 586 (591)
++|.+|+.. +|..|+|+.|.|.|+.++.-.
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 999999986 799999999999999877643
No 25
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=3.3e-26 Score=226.56 Aligned_cols=172 Identities=20% Similarity=0.311 Sum_probs=143.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEeccC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAG-KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 296 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~~ 296 (591)
..++|||+|||+.+|+++|.++|..|| .|..|.++.+.. |.++|||||+|.+.++|..|+. |+|..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999998876 7899999999999999999995 9999999999999988
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeccCC-CCCcccEEEEEeCCHH
Q 007742 297 EAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQLE 374 (591)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~v~i~~~~~-~~~~~g~a~Vef~~~~ 374 (591)
.+....... ........+|||.|||.. +++++|+++|++||.|..|.|+.+.. ++.++|||||+|.+.+
T Consensus 195 ~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 195 NPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp CCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 654432211 112233589999999999 99999999999999999999998764 4889999999999999
Q ss_pred HHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 375 HAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 375 ~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
+|..|+ .|||. .|.|+.|.|.++.++
T Consensus 266 ~A~~A~-~l~g~-~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 266 SAERAL-QMNRS-LLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHG-GGTTE-EETTEEEEEEECCCC
T ss_pred HHHHHH-HhcCC-EECCcEEEEEEecCC
Confidence 999999 99996 699999999998653
No 26
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=4.3e-26 Score=212.07 Aligned_cols=171 Identities=18% Similarity=0.301 Sum_probs=142.4
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 220 QRTVFAYQMPL-KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 220 ~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
+++|||+|||+ .+|+++|.++|..||.|..|.++.++ +|||||+|.+.++|..|+ .|||..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998764 789999999999999999 599999999999998876
Q ss_pred cccccccccC-------------------CCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccC
Q 007742 298 AEKNLVQSNT-------------------SAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDI 357 (591)
Q Consensus 298 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~ 357 (591)
.......... ...........+++.+|||+|||..+++++|+++|.+|| .|..|.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 5422111100 000011112234578999999999999999999999999 9999998653
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC-CeEEEEEEecC
Q 007742 358 ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV-GRTLKVSSVTD 401 (591)
Q Consensus 358 ~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~-g~~l~v~~~~~ 401 (591)
.+|+|||+|.+.++|..|+..|||. .|. |+.|.|.++++
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSS-CCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCC-ccCCCCeEEEEeecc
Confidence 2789999999999999999999997 588 99999999865
No 27
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.2e-25 Score=218.20 Aligned_cols=157 Identities=25% Similarity=0.390 Sum_probs=141.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.+.. ++|||||+|.+.++|..|+ .+||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999863 4799999999999999999 5999999999999998
Q ss_pred CccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHH
Q 007742 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 375 (591)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~ 375 (591)
+.+ ..+|||+|||+.+++++|.++|..||.|..|.|+.+. +|.++|||||+|.+.++
T Consensus 93 a~~----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 93 ATH----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CCC----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHH
T ss_pred ccc----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHH
Confidence 753 2689999999999999999999999999999999984 89999999999999999
Q ss_pred HHHHHHHhcCCeeeC---CeEEEEEEecCC
Q 007742 376 AKAAQSALNGKLEIV---GRTLKVSSVTDH 402 (591)
Q Consensus 376 a~~a~~~l~g~~~~~---g~~l~v~~~~~~ 402 (591)
|..|+..|++...+. |++|.|.++...
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999995433355 899999987643
No 28
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=4e-25 Score=210.07 Aligned_cols=194 Identities=25% Similarity=0.322 Sum_probs=146.3
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 319 AIDRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 319 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
+.+++|||+|||+ .+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|..|+..|+|. .|.|+.|.|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~v~ 105 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRIT 105 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTC-BCSSSBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 3458999999999 99999999999999999999998764 789999999999999999999996 6999999999
Q ss_pred EecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCC
Q 007742 398 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVP 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (591)
++............... ... . ...... ......
T Consensus 106 ~a~~~~~~~~~~~~~~~-------~~~-------------------~----~~~~~~-------------~~~~~~---- 138 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQ-------GLT-------------------K----DYGNSP-------------LHRFKK---- 138 (229)
T ss_dssp CCSCCCCCCCCSSSSTT-------TTE-------------------E----ECTTCS-------------SCCCCS----
T ss_pred EecCccccCcccccccc-------ccc-------------------c----ccccCc-------------ccccCC----
Confidence 88654221110000000 000 0 000000 000000
Q ss_pred CCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhcccc-ceEEEEEecCCCeeEEEEeCCHH
Q 007742 478 VPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTE 556 (591)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G-~V~~v~l~~~~~g~afV~F~~~e 556 (591)
+. .. .......++.+|+|.|| |..++ +++|.++|+.|| .|..|.+....+|+|||+|.+.+
T Consensus 139 -~~------~~-~~~~~~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~ 200 (229)
T 2adc_A 139 -PG------SK-NFQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 200 (229)
T ss_dssp -TT------SG-GGTTCCCSCSEEEEECC--CTTCC--------HHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHH
T ss_pred -cc------cc-ccccCCCCCCEEEEeCC--CccCC--------HHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHH
Confidence 00 00 00112356789999999 88777 899999999999 99999996667899999999999
Q ss_pred HHHHHHHHhcccccC-CeEEEEEEeCch
Q 007742 557 AAASAQRAMHMRWFA-RRLISAIFMKPE 583 (591)
Q Consensus 557 ~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 583 (591)
+|.+|+..|||..|+ |+.|.|.|+.+.
T Consensus 201 ~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 201 EAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999 999999998764
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=2.8e-25 Score=202.19 Aligned_cols=161 Identities=23% Similarity=0.353 Sum_probs=136.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCC--CcccEEEEEeCCHHHHHHHHHHhcCCeeeC---CeEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETG--QCKGFGFVQFAQLEHAKAAQSALNGKLEIV---GRTLK 395 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~--~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~---g~~l~ 395 (591)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..++ .++|||||+|.+.++|..|+..|+|. .+. ++.+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~~~~~~~ 81 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-KVLPGMHHPIQ 81 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCCE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc-EEccCCccceE
Confidence 3799999999999999999999999999999999988666 78999999999999999999999996 343 45666
Q ss_pred EEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCC
Q 007742 396 VSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPA 475 (591)
Q Consensus 396 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (591)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 655421100
Q ss_pred CCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC----CCeeEEEE
Q 007742 476 VPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLR 551 (591)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~----~~g~afV~ 551 (591)
...+..+|+|.|| |..++ +++|.++|+.||.|..+.+..+ ++|+|||+
T Consensus 91 ------------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMI--SKKCT--------ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp ------------------SCGGGSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred ------------------ccCCCCeEEEcCC--CCcCC--------HHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 0123457999999 88887 8999999999999999988654 47899999
Q ss_pred eCCHHHHHHHHHHhcccccC---CeEEEEEEeC
Q 007742 552 FESTEAAASAQRAMHMRWFA---RRLISAIFMK 581 (591)
Q Consensus 552 F~~~e~A~~A~~~l~g~~~~---g~~l~v~~~~ 581 (591)
|.+.++|.+|+..|||..+. |++|.|.|+.
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred ECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999998875 4999999974
No 30
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=5e-25 Score=204.83 Aligned_cols=192 Identities=24% Similarity=0.312 Sum_probs=145.3
Q ss_pred CceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+++|||+|||+ .+++++|+++|+.||.|..|.++.+. +|||||+|.+.++|..|+..|+|. .|.|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTC-CCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-eecCeEEEEEEe
Confidence 37999999999 99999999999999999999998764 789999999999999999999996 699999999998
Q ss_pred cCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCC
Q 007742 400 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 479 (591)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (591)
............... .. ....+.... ..+.. +
T Consensus 77 ~~~~~~~~~~~~~~~-------~~-----------------------~~~~~~~~~-------------~r~~~-----~ 108 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQ-------GL-----------------------TKDYGNSPL-------------HRFKK-----P 108 (198)
T ss_dssp CCCSCCCSSSSSSSS-------SC-----------------------EEESSCCCT-------------TSSSS-----C
T ss_pred cCCCcCCCCcCCccc-------cc-----------------------cccccCCch-------------hhccC-----c
Confidence 654321110000000 00 000000000 00000 0
Q ss_pred CCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhcccc-ceEEEEEecCCCeeEEEEeCCHHHH
Q 007742 480 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAA 558 (591)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G-~V~~v~l~~~~~g~afV~F~~~e~A 558 (591)
. .. ......+++.+|+|.|| |..++ +++|.++|+.|| .|..|.+....+|+|||+|.+.++|
T Consensus 109 ~-----~~--~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A 171 (198)
T 1qm9_A 109 G-----SK--NFQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEA 171 (198)
T ss_dssp C-----CC--CCSCCCCCCCEEEECCC--CTTCC--------HHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHH
T ss_pred c-----cc--ccccCCCCccEEEEeCC--CCCCC--------HHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHH
Confidence 0 00 00012356789999999 88777 899999999999 9999999666799999999999999
Q ss_pred HHHHHHhcccccC-CeEEEEEEeCch
Q 007742 559 ASAQRAMHMRWFA-RRLISAIFMKPE 583 (591)
Q Consensus 559 ~~A~~~l~g~~~~-g~~l~v~~~~~~ 583 (591)
.+|+..|||..|+ |+.|.|.|+.+.
T Consensus 172 ~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 172 VQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999 999999998764
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1.2e-25 Score=204.73 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=137.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||+|||..+++++|+++|..||.+..+ ++.+..++.++|||||+|.+.++|..|+ .|+|. .|.|+.|.|.++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~v~~~ 88 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGL-KVFGNEIKLEKP 88 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGE-EETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCC-EeCCeEEEEecC
Confidence 35899999999999999999999999877652 3334447788999999999999999999 69995 799999999887
Q ss_pred cCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCC
Q 007742 400 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 479 (591)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (591)
......
T Consensus 89 ~~~~~~-------------------------------------------------------------------------- 94 (175)
T 1fje_B 89 KGRDSK-------------------------------------------------------------------------- 94 (175)
T ss_dssp CCSSCS--------------------------------------------------------------------------
T ss_pred CCcccc--------------------------------------------------------------------------
Confidence 532100
Q ss_pred CCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHH
Q 007742 480 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAA 559 (591)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~ 559 (591)
...+..+|+|.|| |..++ +++|.++|+.||.|..+.....++|+|||+|.+.++|.
T Consensus 95 --------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 95 --------------KVRAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp --------------TTGGGGEEEEESC--CSSCC--------HHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHH
T ss_pred --------------ccccCCEEEEeCC--CCCCC--------HHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHH
Confidence 0123468999999 88887 89999999999999888223457899999999999999
Q ss_pred HHHHHhcccccCCeEEEEEEeCch
Q 007742 560 SAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 560 ~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
+|+..|||..|+|+.|.|.|+.++
T Consensus 151 ~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 151 KNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999764
No 32
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=2.5e-25 Score=200.92 Aligned_cols=159 Identities=20% Similarity=0.358 Sum_probs=138.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
+++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+.. +. .+.|+.|.|.++.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH-ILDGKVIDPKRAI 79 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC-EETTEECCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc-ccCCeEccccccc
Confidence 37999999999999999999999999999999999988899999999999999999999963 43 6999999887753
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
...
T Consensus 80 ~~~----------------------------------------------------------------------------- 82 (167)
T 2cjk_A 80 PRD----------------------------------------------------------------------------- 82 (167)
T ss_dssp CHH-----------------------------------------------------------------------------
T ss_pred chh-----------------------------------------------------------------------------
Confidence 200
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 555 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~ 555 (591)
...++.+|+|.|| |..++ +++|.++|+.||.|..+.+..+ ++|+|||+|.+.
T Consensus 83 -------------~~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 83 -------------EQDKTGKIFVGGI--GPDVR--------PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp -------------HHHHCEEEEEEEE--CTTCC--------HHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred -------------hccCCCeEEECCC--CCCCC--------HHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 0012347999999 88887 8999999999999999988543 579999999999
Q ss_pred HHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 556 EAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 556 e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
++|.+|++ |+|..|+|+.|.|.|+.++
T Consensus 140 ~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999998 8999999999999999875
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=1.9e-24 Score=200.58 Aligned_cols=191 Identities=18% Similarity=0.167 Sum_probs=136.5
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 320 IDRKLYVGNLH-FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 320 ~~~~l~v~nl~-~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
.+.+|||+||| ..+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|..||+.|||. .|.|+.|.|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNN-FMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCceEEEEE
Confidence 35899999999 799999999999999999999997653 799999999999999999999996 79999999999
Q ss_pred ecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCC
Q 007742 399 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPV 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (591)
++....... .. ..... +... . ....... ... .
T Consensus 77 s~~~~~~p~---~~--~~~~~-~~~~---------------------~-~~~~~~~-------------~~r-------~ 108 (205)
T 3tyt_A 77 SKQPAIMPG---QS--YGLED-GSCS---------------------Y-KDFSESR-------------NNR-------F 108 (205)
T ss_dssp CSCSCCCCC---SC--CBCTT-SCBS---------------------E-EECTTCT-------------TCS-------C
T ss_pred ccCCccCCC---cc--ccccc-CCcc---------------------c-cccCCCc-------------ccc-------c
Confidence 864321000 00 00000 0000 0 0000000 000 0
Q ss_pred CCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccce--EEEEEecC---CCeeEEEEeC
Q 007742 479 PAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFE 553 (591)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V--~~v~l~~~---~~g~afV~F~ 553 (591)
... ... .......|+.+|+|.|| |..++ +++|.++|+.||.| ..|.+... .+|+|||+|.
T Consensus 109 ~~~----~~~-~~~~~~~p~~~l~v~NL--p~~~t--------~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~ 173 (205)
T 3tyt_A 109 STP----EQA-AKNRIQHPSNVLHFFNA--PLEVT--------EENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWD 173 (205)
T ss_dssp SSH----HHH-TTSCCCCCCSEEEEEEE--CTTCC--------HHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECS
T ss_pred cCc----ccc-cccccCCCcceEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeC
Confidence 000 000 00012356788999999 88888 89999999999999 88887543 3699999999
Q ss_pred CHHHHHHHHHHhcccccCCe----EEEEEE
Q 007742 554 STEAAASAQRAMHMRWFARR----LISAIF 579 (591)
Q Consensus 554 ~~e~A~~A~~~l~g~~~~g~----~l~v~~ 579 (591)
+.++|.+|+..|||..|.|. ++.|.|
T Consensus 174 ~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 174 SKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 99999999999999999888 455544
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=3.1e-24 Score=199.52 Aligned_cols=176 Identities=22% Similarity=0.404 Sum_probs=138.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPF----G-------PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~ 389 (591)
.++|||+|||+.+++++|+++|+.| | .|..+.+. .++|||||+|.+.++|..|+ .|+|. .|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~-~~ 75 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGI-IF 75 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTE-EE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCC-EE
Confidence 4899999999999999999999999 5 56555553 35899999999999999999 89995 79
Q ss_pred CCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccC
Q 007742 390 VGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLP 469 (591)
Q Consensus 390 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (591)
.|+.|.|.++............. . .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~------------------------------------~----------------~--- 100 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENP------------------------------------S----------------V--- 100 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCS------------------------------------S----------------C---
T ss_pred cCceEEEeCCCCCCCCCCCcCCC------------------------------------c----------------C---
Confidence 99999999875432111000000 0 0
Q ss_pred cCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCC-----
Q 007742 470 VVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS----- 544 (591)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~----- 544 (591)
..+.........+..+|+|.|| |..++ +++|.++|+.||.|..|.+..+.
T Consensus 101 ---------------~~~~~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 101 ---------------YVPGVVSTVVPDSAHKLFIGGL--PNYLN--------DDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp ---------------CCTTSSCCCSSCCCCEEEEECC--CTTCC--------HHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred ---------------CCCCCccCCCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 0000011112356678999999 88877 89999999999999999886543
Q ss_pred CeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchh
Q 007742 545 AGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 584 (591)
Q Consensus 545 ~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 584 (591)
+|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.+..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 7899999999999999999999999999999999988753
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=4.6e-24 Score=193.58 Aligned_cols=153 Identities=24% Similarity=0.404 Sum_probs=132.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPF----G-------PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~ 389 (591)
.++|||+|||+.+++++|+++|++| | .|..+.+.. ++|||||+|.+.++|..|+ .|+|. .+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~-~~ 75 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGI-IF 75 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTC-EE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCc-Ee
Confidence 3799999999999999999999999 6 677776643 4799999999999999999 89996 69
Q ss_pred CCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccC
Q 007742 390 VGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLP 469 (591)
Q Consensus 390 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (591)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999987532100
Q ss_pred cCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----C
Q 007742 470 VVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----S 544 (591)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~ 544 (591)
.....+|+|.|| |..++ +++|.++|+.||.|..+.+..+ +
T Consensus 91 -------------------------~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 135 (172)
T 2g4b_A 91 -------------------------LPGAHKLFIGGL--PNYLN--------DDQVKELLTSFGPLKAFNLVKDSATGLS 135 (172)
T ss_dssp -------------------------CTTTTCEEEECC--CTTCC--------HHHHHHHHHTTSCEEEEEEEECTTTCSE
T ss_pred -------------------------CCCCCEEEEEcC--CCcCC--------HHHHHHHHHhcCCceEEEEEecCCCCCc
Confidence 112457999999 88877 8999999999999999988654 3
Q ss_pred CeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeC
Q 007742 545 AGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMK 581 (591)
Q Consensus 545 ~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~ 581 (591)
+|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 136 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 7899999999999999999999999999999999974
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.90 E-value=4.2e-23 Score=200.13 Aligned_cols=151 Identities=26% Similarity=0.403 Sum_probs=133.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||+.+|+++|.++|+.||.|..|.|..+ +|||||+|.+.++|..|+..|+|. .|.|+.|.|.++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~-~i~g~~l~v~~a~ 94 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGT-ILKSRPLRIRFAT 94 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCc-EECCceeEeeecc
Confidence 479999999999999999999999999999998643 789999999999999999999996 6999999998863
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHhhhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCC
Q 007742 401 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 480 (591)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (591)
T Consensus 95 -------------------------------------------------------------------------------- 94 (261)
T 3sde_A 95 -------------------------------------------------------------------------------- 94 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC----CCeeEEEEeCCHH
Q 007742 481 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTE 556 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~----~~g~afV~F~~~e 556 (591)
++.+|+|.|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.+
T Consensus 95 ----------------~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 148 (261)
T 3sde_A 95 ----------------HGAALTVKNL--SPVVS--------NELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKP 148 (261)
T ss_dssp ----------------CSSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHH
T ss_pred ----------------cCCcccccCC--CCCCC--------HHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHH
Confidence 1237999999 88877 8999999999999999988543 4789999999999
Q ss_pred HHHHHHHHhcccc-cC---CeEEEEEEeCchh
Q 007742 557 AAASAQRAMHMRW-FA---RRLISAIFMKPED 584 (591)
Q Consensus 557 ~A~~A~~~l~g~~-~~---g~~l~v~~~~~~~ 584 (591)
+|.+|+..||+.. +. |++|.|.++.+..
T Consensus 149 ~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 149 PARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999996544 44 9999999987654
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.4e-19 Score=161.18 Aligned_cols=148 Identities=22% Similarity=0.284 Sum_probs=112.7
Q ss_pred EEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEc
Q 007742 249 DVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVG 327 (591)
Q Consensus 249 ~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 327 (591)
.+.|+.+.. .++|||||+|.+.++|.+|+ .+++.......+.+............ ..............+|||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG---SHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC---CCCSSCCCCCCBCCEEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc---ccccccccCCCCCCEEEEe
Confidence 456777665 58999999999999999999 56654433333333222111111110 0111111222345899999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 328 NLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 328 nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++...
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQMARYG 150 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE-ESSSSEEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEECCCC
Confidence 99999999999999999999999999999888999999999999999999999999995 799999999998754
No 38
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.82 E-value=5.2e-20 Score=151.92 Aligned_cols=97 Identities=42% Similarity=0.733 Sum_probs=92.1
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-CCeeEEEEeCCHHHHHHHHHHhcccccCCe
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-SAGFVYLRFESTEAAASAQRAMHMRWFARR 573 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-~~g~afV~F~~~e~A~~A~~~l~g~~~~g~ 573 (591)
+.+++||+|.||++|..+.+++++.+|+++|+++|++||.|..|.|+.+ ++|+|||+|.+.++|.+|+..|||+.|+|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4688999999999999999999999999999999999999999999765 489999999999999999999999999999
Q ss_pred EEEEEEeCchhhhhccCC
Q 007742 574 LISAIFMKPEDYEAKFKS 591 (591)
Q Consensus 574 ~l~v~~~~~~~~~~~~~~ 591 (591)
.|.|.|+++..|..+||+
T Consensus 84 ~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 84 MITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp ECEEEEECHHHHHHHCGG
T ss_pred EEEEEEEcHHHHHHhCcc
Confidence 999999999999999985
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=1.7e-19 Score=150.87 Aligned_cols=107 Identities=22% Similarity=0.356 Sum_probs=73.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
..+|||+|||+.+|+++|+++|.+||.|.+|.|+.+.. .++|||||+|.+.++|..|| .|+|..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999999999999999999999864 48999999999999999999 6999999999999998765
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHH
Q 007742 299 EKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336 (591)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 336 (591)
........ .........|||.|||+.+|++
T Consensus 83 ~~~~~~~~--------~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 83 RKEREAEL--------GARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCC-----------------------------------
T ss_pred cccccccc--------ccccCCCCceEeCCCCCCcccc
Confidence 43221111 0111123679999999999876
No 40
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.78 E-value=7.9e-19 Score=143.33 Aligned_cols=94 Identities=34% Similarity=0.548 Sum_probs=87.9
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-------CCeeEEEEeCCHHHHHHHHHHhcc
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGFVYLRFESTEAAASAQRAMHM 567 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-------~~g~afV~F~~~e~A~~A~~~l~g 567 (591)
+.|+++|+|.||++|..+.++.++.++.++|+++|++||.|.+|.|+.+ ++|+|||+|.+.++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4688999999999999999989999999999999999999999998643 579999999999999999999999
Q ss_pred cccCCeEEEEEEeCchhhhhc
Q 007742 568 RWFARRLISAIFMKPEDYEAK 588 (591)
Q Consensus 568 ~~~~g~~l~v~~~~~~~~~~~ 588 (591)
+.|+|+.|.|.|++++.|.+.
T Consensus 82 ~~f~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp CEETTEECEEEEECHHHHHTT
T ss_pred CEeCCCEEEEEEeCHHHHhhc
Confidence 999999999999999999864
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.1e-18 Score=153.67 Aligned_cols=136 Identities=22% Similarity=0.311 Sum_probs=112.1
Q ss_pred CCccceEEEEecCcchHHHHH-HH-cCCccCCeeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHH
Q 007742 259 RRSKGVGYIEFYDVMSVPMAI-AL-SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTET 336 (591)
Q Consensus 259 g~~~G~afV~F~~~e~A~~Al-~l-~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 336 (591)
...+|+++|+|.+.++|.+|+ .+ ||..+.| .+.+.++.........................++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 357899999999999999999 68 9999999 99998876544332221222222223334456899999999999999
Q ss_pred HHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 337 QLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 337 ~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
+|+++|+.||.|..|.|+.+ ++|||||+|.+.++|..|+..|||. .|.|++|.|.++.+
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR-TLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS-CSSSSCCEEEECCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEcCC
Confidence 99999999999999999865 5899999999999999999999996 69999999999864
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=140.15 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=76.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
++++|||+|||+.+|+++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|++|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5689999999999999999999999999999999999999999999999999999999999 699999999999999885
Q ss_pred c
Q 007742 298 A 298 (591)
Q Consensus 298 ~ 298 (591)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 43
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.4e-17 Score=146.68 Aligned_cols=139 Identities=15% Similarity=0.191 Sum_probs=108.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-cCCeeeCCeEEEEEEecCCCCCCcccccCCCCCCCCCCCccccHHHHHHHHHHh
Q 007742 359 TGQCKGFGFVQFAQLEHAKAAQSAL-NGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKL 437 (591)
Q Consensus 359 ~~~~~g~a~Vef~~~~~a~~a~~~l-~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (591)
....+|+++|+|.+.++|.+|+..| ||. .+.| .+.+.++...........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~-~~~G-~~~~~~a~~~~~~~~~~~--------------------------- 59 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDN-GVDG-EWTYDDATKTFTVTEGSH--------------------------- 59 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHH-TCCC-EEEEETTTTEEEEECSSS---------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCC-CCCC-ceecccccCccccccccc---------------------------
Confidence 3456899999999999999999999 896 6999 888876532100000000
Q ss_pred hhcCCccccCCcCCCCCcccCccccccccccCcCCCCCCCCCCCCCCccccccccccCCCcceEEEeccCCCCCCCCchh
Q 007742 438 DRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDF 517 (591)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~v~Nl~~p~~~~~~~~ 517 (591)
. ...........+.++|+|+|| |..++
T Consensus 60 -------------------------------~----------------~~~~~~~~~~~~~~~l~V~nl--~~~~t---- 86 (150)
T 2i2y_A 60 -------------------------------H----------------HHHHMHRDSCPLDCKVYVGNL--GNNGN---- 86 (150)
T ss_dssp -------------------------------S----------------CCCCSCSSSSTTSCEEEEESC--CSCCS----
T ss_pred -------------------------------c----------------ccccccccCCCCCCEEEEeCC--CCCCC----
Confidence 0 000000112345678999999 88777
Q ss_pred hhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCch
Q 007742 518 DLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 518 ~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~ 583 (591)
+++|.++|+.||.|..|.+..+++|+|||+|.+.++|..|+..|||..|+|+.|.|.|+.+.
T Consensus 87 ----~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 ----KTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp ----CHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred ----HHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 78999999999999999998888999999999999999999999999999999999998764
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=2.6e-17 Score=146.46 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=71.5
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC-----CCeeEEEEeCCHHHHHHHHHHhccccc
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 570 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~-----~~g~afV~F~~~e~A~~A~~~l~g~~~ 570 (591)
.+..+|||.|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.++|..|+..|||..|
T Consensus 68 ~~~~~l~v~nl--~~~~~--------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 68 EGMTSLKVDNL--TYRTS--------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp CBCCEEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 44578999999 88888 8999999999999999998543 689999999999999999999999999
Q ss_pred CCeEEEEEEeCchh
Q 007742 571 ARRLISAIFMKPED 584 (591)
Q Consensus 571 ~g~~l~v~~~~~~~ 584 (591)
+|+.|.|.|+.+..
T Consensus 138 ~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 138 DGRELRVQMARYGR 151 (158)
T ss_dssp SSSEEEEEEECCSS
T ss_pred CCeEEEEEECCCCC
Confidence 99999999998753
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=134.97 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=77.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.||.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999 69999999999999887
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6443
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-18 Score=134.25 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=74.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-H-cCCccCCeeEEeccC
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAG-KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L-SGQLLLGQPVMVKPS 296 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l-~g~~i~g~~i~v~~~ 296 (591)
+++|||+|||+.+|+++|+++|.+|| .|.+|.|+.++.+|.++|||||+|.+.++|.+||. + ++..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999995 5 456799999999998
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7644
No 47
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=130.19 Aligned_cols=80 Identities=36% Similarity=0.540 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
+++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||. .|.|++|.|.+++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-RLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEEee
Confidence 378999999999999999999999999999999999889999999999999999999999999996 7999999999986
Q ss_pred C
Q 007742 401 D 401 (591)
Q Consensus 401 ~ 401 (591)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=129.54 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=79.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
..+.++|||+|||+.+|+++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7644
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=129.51 Aligned_cols=80 Identities=15% Similarity=0.317 Sum_probs=73.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCC--eeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCC----ccCCee
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGK--VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQ----LLLGQP 290 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~--i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~----~i~g~~ 290 (591)
..-.+|||+|||+.+|+++|.++|.+||. |.+|.+++|+.||.++|||||+|.+.++|.+|+ .|||. .|.|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34479999999999999999999999995 679999999999999999999999999999999 68987 489999
Q ss_pred EEeccCc
Q 007742 291 VMVKPSE 297 (591)
Q Consensus 291 i~v~~~~ 297 (591)
|.|.++.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999875
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=9.9e-17 Score=127.03 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.+.++|||+|||+.+|+++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999989999999999999999999999 59999999999999987
Q ss_pred ccc
Q 007742 297 EAE 299 (591)
Q Consensus 297 ~~~ 299 (591)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.3e-16 Score=126.36 Aligned_cols=80 Identities=30% Similarity=0.493 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
..+.++|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+|+.+++..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45679999999999999999999999999999999999999999999999999999999999998999999999999764
No 52
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=129.16 Aligned_cols=85 Identities=21% Similarity=0.404 Sum_probs=79.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|| .||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345799999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred Cccccc
Q 007742 296 SEAEKN 301 (591)
Q Consensus 296 ~~~~~~ 301 (591)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 877554
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=3.4e-16 Score=131.03 Aligned_cols=86 Identities=23% Similarity=0.419 Sum_probs=80.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 446799999999999999999999999999999999999989999999999999999999999 5999999999999999
Q ss_pred Ccccccc
Q 007742 296 SEAEKNL 302 (591)
Q Consensus 296 ~~~~~~~ 302 (591)
+......
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 8765543
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=4.4e-17 Score=129.80 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAG--KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
.+|||+|||+.+|+++|+++|.+|| .|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999 699999999999999887
Q ss_pred ccc
Q 007742 298 AEK 300 (591)
Q Consensus 298 ~~~ 300 (591)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 55
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=128.68 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=78.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 87543
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=126.60 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=78.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
..+++|||+|||+.+|+++|.++|.+||.|..|.++.++.++.++|||||+|.+.++|..|+ .||+..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999 59999999999999998
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
....
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6544
No 57
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.67 E-value=1.5e-16 Score=132.12 Aligned_cols=88 Identities=27% Similarity=0.535 Sum_probs=78.0
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecC---------CCeeEEEEeCCHHHHHHHHHHhc
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---------SAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~---------~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
+|++||+|.||++|..+. .+|+++|+++|++||.|.+|.|+.+ ++|+|||+|.++++|.+|+..||
T Consensus 18 ~ps~vl~L~Nm~~~~el~-----ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDID-----DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp HSCCEEEEESCSCGGGCC-----TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHH-----HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 478899999998876543 4578999999999999999988643 24899999999999999999999
Q ss_pred ccccCCeEEEEEEeCchhhhhc
Q 007742 567 MRWFARRLISAIFMKPEDYEAK 588 (591)
Q Consensus 567 g~~~~g~~l~v~~~~~~~~~~~ 588 (591)
|+.|+|+.|.|.|+++..|.+.
T Consensus 93 Gr~f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp TCEETTEECEEEEECHHHHHTT
T ss_pred CCEECCcEEEEEEcChHhcccc
Confidence 9999999999999999999763
No 58
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=3e-16 Score=127.87 Aligned_cols=90 Identities=27% Similarity=0.482 Sum_probs=77.8
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEec------CCCeeEEEEeCCHHHHHHHHHHhcc
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK------RSAGFVYLRFESTEAAASAQRAMHM 567 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~------~~~g~afV~F~~~e~A~~A~~~l~g 567 (591)
.+.++++|+|.||++|..+. .+++++|+++|++||.|..|.|+. .++|+|||+|.+.++|.+|+..|||
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~-----dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVD-----EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEcCCChHHhh-----HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 35688999999998776543 345899999999999999999864 3589999999999999999999999
Q ss_pred cccCCeEEEEEEeCchhhhhc
Q 007742 568 RWFARRLISAIFMKPEDYEAK 588 (591)
Q Consensus 568 ~~~~g~~l~v~~~~~~~~~~~ 588 (591)
+.|+|+.|.|.|+.+..|...
T Consensus 79 ~~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 79 RYFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp CEETTEECEEEECCHHHHHTT
T ss_pred CEECCcEEEEEEcCHHHhhhh
Confidence 999999999999999998753
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=2.3e-16 Score=123.63 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=75.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
.+|||+|||+.+|+++|.++|..||.|..|.++.+..+|.++|||||+|.+.++|..|+ .|||..+.|+.|.|.++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999 59999999999999988653
No 60
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=130.10 Aligned_cols=83 Identities=27% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 61
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=8.8e-17 Score=128.00 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=75.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
++|||+|||+.+|+++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|..||+.|++.+.|.|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 899999999988999999999999999999999988865567999999999986
Q ss_pred CC
Q 007742 401 DH 402 (591)
Q Consensus 401 ~~ 402 (591)
+.
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=128.76 Aligned_cols=86 Identities=26% Similarity=0.423 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEe
Q 007742 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293 (591)
Q Consensus 215 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v 293 (591)
......++|||+|||+.+|+++|.++|.+||.|..|.++.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456799999999999999999999999999999999999989999999999999999999999 59999999999999
Q ss_pred ccCcccc
Q 007742 294 KPSEAEK 300 (591)
Q Consensus 294 ~~~~~~~ 300 (591)
.++....
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9987654
No 63
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=126.25 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=74.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCC---eeeCCeEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGP--VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK---LEIVGRTLKV 396 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~---~~~~g~~l~v 396 (591)
.+|||+|||+.+|+++|+++|++||. |..|.++.++.++.++|||||+|.+.++|..|++.|||. +.|+|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 79999999999999999999999995 678999999989999999999999999999999999985 4699999999
Q ss_pred EEecC
Q 007742 397 SSVTD 401 (591)
Q Consensus 397 ~~~~~ 401 (591)
.++++
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 64
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=127.09 Aligned_cols=84 Identities=25% Similarity=0.415 Sum_probs=77.9
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCccceEEEEecCcchHHHHH-HHcC
Q 007742 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRD--------VRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSG 283 (591)
Q Consensus 213 ~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g 283 (591)
...+....++|||+|||+.+|+++|+++|.+||.|.. |.++.++.+|.++|||||+|.+.++|..|+ .|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3444556799999999999999999999999999999 999999999999999999999999999999 5999
Q ss_pred CccCCeeEEeccC
Q 007742 284 QLLLGQPVMVKPS 296 (591)
Q Consensus 284 ~~i~g~~i~v~~~ 296 (591)
..|.|+.|.|.++
T Consensus 86 ~~~~g~~l~V~~A 98 (99)
T 2la6_A 86 KEFSGNPIKVSFA 98 (99)
T ss_dssp CBSSSSBCEEEEC
T ss_pred CEeCCcEEEEEec
Confidence 9999999999876
No 65
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=3.2e-16 Score=128.30 Aligned_cols=85 Identities=28% Similarity=0.491 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 215 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
.+..+.++|||+|||+.+|+++|.++|..|| |..|.++.++.+|.++|||||+|.+.++|.+||.||+..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 3445679999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987644
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=129.58 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
..++|||+|||+.+|+++|.++|.+||.|.+|.|+.+.. |.++|||||+|.+.++|..||.+++..|.|+.|.|.+...
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 458999999999999999999999999999999999987 9999999999999999999999999999999999987654
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=2.6e-16 Score=123.99 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.+.++|||+|||+.+|+++|.++|.+||.|..|.++.+..+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45699999999999999999999999999999999999999999999999999999999999 79999999999999876
No 68
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=133.34 Aligned_cols=83 Identities=59% Similarity=0.969 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
..++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||.||+..|.|+.|.|.++..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccc
Q 007742 299 EKN 301 (591)
Q Consensus 299 ~~~ 301 (591)
...
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 554
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=8.6e-17 Score=130.71 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=77.4
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC-ee
Q 007742 219 DQRTVFAYQMPL------KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG-QP 290 (591)
Q Consensus 219 ~~~~l~V~nLp~------~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g-~~ 290 (591)
..++|||+|||+ .+++++|.++|.+||.|..|.|+.++.||.++|||||+|.+.++|.+|+ .|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 458999999999 9999999999999999999999999999999999999999999999999 699999999 99
Q ss_pred EEeccCcccc
Q 007742 291 VMVKPSEAEK 300 (591)
Q Consensus 291 i~v~~~~~~~ 300 (591)
|.|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999886643
No 70
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=3.2e-16 Score=126.51 Aligned_cols=82 Identities=28% Similarity=0.439 Sum_probs=77.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~ 298 (591)
+++|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999999999999999999999999999999999 6999999999999998876
Q ss_pred ccc
Q 007742 299 EKN 301 (591)
Q Consensus 299 ~~~ 301 (591)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 543
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=126.10 Aligned_cols=82 Identities=30% Similarity=0.448 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|+++|..||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 445699999999999999999999999999999999999999999999999999999999999 5999999999999998
Q ss_pred Ccc
Q 007742 296 SEA 298 (591)
Q Consensus 296 ~~~ 298 (591)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 753
No 72
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=127.99 Aligned_cols=85 Identities=24% Similarity=0.490 Sum_probs=79.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
...+.++|||+|||+.+|+++|.++|.+||.|..|.++.++.++.++|||||+|.+.++|..|+ .||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3446799999999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 886544
No 73
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=1.1e-16 Score=165.08 Aligned_cols=167 Identities=17% Similarity=0.345 Sum_probs=110.1
Q ss_pred HHHHHHhcCCCeeEEEEee----cC-CCCCccceE--EEEecCcchHHHHH-HHcCCccCCeeEEeccCcccccc-cccc
Q 007742 236 DVYEFFSKAGKVRDVRLIM----DR-NSRRSKGVG--YIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNL-VQSN 306 (591)
Q Consensus 236 ~l~~~f~~~G~i~~v~~~~----d~-~~g~~~G~a--fV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~~~~-~~~~ 306 (591)
.|..+|.++|+|..|..+. +. .+....|++ |+.|.....+..++ .++.....+.............. ....
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788999999998773332 22 233344555 88888766655444 22222111110000000000000 0000
Q ss_pred CCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 007742 307 TSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 386 (591)
Q Consensus 307 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~ 386 (591)
.............+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|..||..|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 00000111112233589999999999999999999999999999999999889999999999999999999999999996
Q ss_pred eeeCCeEEEEEEecCCC
Q 007742 387 LEIVGRTLKVSSVTDHV 403 (591)
Q Consensus 387 ~~~~g~~l~v~~~~~~~ 403 (591)
.|.|+.|.|.++....
T Consensus 168 -~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 168 -KIDGRRVLVDVERGRT 183 (437)
T ss_pred -EECCEEEEEEEeCCCC
Confidence 6999999999987543
No 74
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=128.67 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=78.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345799999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+.+..
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 86644
No 75
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=128.45 Aligned_cols=84 Identities=26% Similarity=0.443 Sum_probs=78.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
+....++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
++.+.
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 88653
No 76
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.5e-16 Score=128.00 Aligned_cols=86 Identities=22% Similarity=0.480 Sum_probs=79.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeec-CCCCCccceEEEEecCcchHHHHH-HH-cCCccCCeeEE
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD-RNSRRSKGVGYIEFYDVMSVPMAI-AL-SGQLLLGQPVM 292 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d-~~~g~~~G~afV~F~~~e~A~~Al-~l-~g~~i~g~~i~ 292 (591)
.....++|||+|||+.+|+++|+++|..||.|..|.|+.+ ..+|.++|||||+|.+.++|.+|| .| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456799999999999999999999999999999999999 788999999999999999999999 58 89999999999
Q ss_pred eccCccccc
Q 007742 293 VKPSEAEKN 301 (591)
Q Consensus 293 v~~~~~~~~ 301 (591)
|.++.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 77
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=4.3e-16 Score=130.13 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=71.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
.+|||+|||+.+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|..||..|+|. .|.|+.|.|.++..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~-~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGRFKS 82 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEESSC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECCC
Confidence 689999999999999999999999999999999874 447999999999999999999999996 69999999998753
No 78
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=128.84 Aligned_cols=84 Identities=15% Similarity=0.357 Sum_probs=78.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346799999999999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 79
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=4.3e-16 Score=130.37 Aligned_cols=85 Identities=19% Similarity=0.422 Sum_probs=79.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred Cccccc
Q 007742 296 SEAEKN 301 (591)
Q Consensus 296 ~~~~~~ 301 (591)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 876543
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=127.77 Aligned_cols=85 Identities=29% Similarity=0.468 Sum_probs=78.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC-CCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS-RRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~-g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
+..+.++|||+|||+.+|+++|.++|..|| |..|.|+.++.+ |.++|||||+|.+.++|.+||.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 345669999999999999999999999999 999999999988 999999999999999999999999999999999999
Q ss_pred cCccccc
Q 007742 295 PSEAEKN 301 (591)
Q Consensus 295 ~~~~~~~ 301 (591)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9876543
No 81
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=2.5e-16 Score=131.91 Aligned_cols=104 Identities=24% Similarity=0.438 Sum_probs=92.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
...+++|||+|||+.+|+++|.++|..||.|..|.++.+ +.++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999976 446999999999999999999 5999999999999999
Q ss_pred CccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCC
Q 007742 296 SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGP 347 (591)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 347 (591)
+.+.... .+++...++++|.++|++||.
T Consensus 82 a~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8764431 467778899999999999984
No 82
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=128.55 Aligned_cols=84 Identities=21% Similarity=0.386 Sum_probs=78.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHc------CCccCCe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALS------GQLLLGQ 289 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~------g~~i~g~ 289 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 446789999999999999999999999999999999999999999999999999999999999 588 9999999
Q ss_pred eEEeccCcccc
Q 007742 290 PVMVKPSEAEK 300 (591)
Q Consensus 290 ~i~v~~~~~~~ 300 (591)
.|.|.++.+..
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999987654
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.3e-16 Score=122.36 Aligned_cols=75 Identities=24% Similarity=0.409 Sum_probs=72.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 222 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
+|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+|+.+++..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999998999999999999999999999999999999999999764
No 84
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=4.2e-16 Score=123.98 Aligned_cols=79 Identities=30% Similarity=0.499 Sum_probs=75.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
.++|||+|||+.+|+++|.++|..||.|..|.++.+..+|.++|||||+|.+.++|.+|+.+||..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998865
No 85
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=4.3e-16 Score=129.27 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445699999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8654
No 86
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.2e-16 Score=128.56 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=77.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999995 776 8999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 986543
No 87
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=125.75 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=76.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.++.+. +|.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999998 8999999999999999999999 7999999999999998
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+.+.
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=5e-16 Score=127.95 Aligned_cols=86 Identities=27% Similarity=0.467 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCcc---CCee
Q 007742 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLL---LGQP 290 (591)
Q Consensus 215 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i---~g~~ 290 (591)
......++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34456799999999999999999999999999999999999999999999999999999999999 5999987 8999
Q ss_pred EEeccCcccc
Q 007742 291 VMVKPSEAEK 300 (591)
Q Consensus 291 i~v~~~~~~~ 300 (591)
|.|.++....
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999987644
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=127.75 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=78.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..++..|.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 44679999999999999999999999999999999999999999999999999999999999966999999999999998
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
.+..
T Consensus 93 ~~~~ 96 (105)
T 2dh8_A 93 TPRG 96 (105)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 7654
No 90
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=126.19 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+.++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-SVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEC
Confidence 3589999999999999999999999999999999999988999999999999999999999999996 799999999987
Q ss_pred c
Q 007742 400 T 400 (591)
Q Consensus 400 ~ 400 (591)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 91
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=126.63 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEe
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRN---SRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMV 293 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~---~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v 293 (591)
.+.++|||+|||+.+|+++|+++|..||.|..|.++.+.. ++.++|||||+|.+.++|.+|+. ||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999876 66899999999999999999995 9999999999999
Q ss_pred ccCccccc
Q 007742 294 KPSEAEKN 301 (591)
Q Consensus 294 ~~~~~~~~ 301 (591)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876543
No 92
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=126.39 Aligned_cols=83 Identities=23% Similarity=0.399 Sum_probs=77.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEecc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDV-RLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKP 295 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v-~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~ 295 (591)
.+.++|||+|||+.+|+++|.++|..||.|..| .++.++.+|.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356999999999999999999999999999999 999998999999999999999999999995 999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 86644
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=127.59 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=77.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCee----
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVR-DVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQP---- 290 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~-~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~---- 290 (591)
..+.++|||+|||+.+|+++|+++|.+||.|. .|.++.++.+|.++|||||+|.+.++|.+|+. |||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44679999999999999999999999999999 99999999999999999999999999999995 9999999999
Q ss_pred EEeccCccc
Q 007742 291 VMVKPSEAE 299 (591)
Q Consensus 291 i~v~~~~~~ 299 (591)
|.|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999887653
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=128.59 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=76.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
...++|||+|||+.+|+++|.++|.+||.|..|.++.+. +|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 8999999999999999999999 59999999999999998
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
....
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7544
No 95
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=124.54 Aligned_cols=80 Identities=33% Similarity=0.572 Sum_probs=75.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+ .||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 6999999999999987
Q ss_pred C
Q 007742 296 S 296 (591)
Q Consensus 296 ~ 296 (591)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 6
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=126.30 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=77.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCc-cCCeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSK-AGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQL-LLGQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~-i~g~~i~v 293 (591)
..+.++|||+|||+.+|+++|.++|.. ||.|..|.|+.+. +|.++|||||+|.+.++|.+|| .||+.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345699999999999999999999999 9999999999998 8999999999999999999999 599999 99999999
Q ss_pred ccCccccc
Q 007742 294 KPSEAEKN 301 (591)
Q Consensus 294 ~~~~~~~~ 301 (591)
.++.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99865543
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=5.1e-16 Score=132.16 Aligned_cols=83 Identities=31% Similarity=0.434 Sum_probs=78.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8654
No 98
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=126.07 Aligned_cols=83 Identities=17% Similarity=0.386 Sum_probs=76.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|+++|..||.|..|.++.+ +|.++|||||+|.+.++|..|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446799999999999999999999999999999999998 7899999999999999999999 5999999999999999
Q ss_pred Cccccc
Q 007742 296 SEAEKN 301 (591)
Q Consensus 296 ~~~~~~ 301 (591)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 876543
No 99
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1.1e-15 Score=125.60 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=77.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC---eeEE
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG---QPVM 292 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g---~~i~ 292 (591)
....++|||+|||+.+|+++|.++|..||.|..|.|+.++ +|.++|||||+|.+.++|.+|+ .||+..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999997 6899999999999999999999 599999988 9999
Q ss_pred eccCccccc
Q 007742 293 VKPSEAEKN 301 (591)
Q Consensus 293 v~~~~~~~~ 301 (591)
|.++.....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 998876543
No 100
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=131.03 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=77.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKV-RDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i-~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
...+.++|||+|||+.+|+++|+++|..||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.+|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567999999999999999999999999999 899999998 8999999999999999999999889999999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887655
No 101
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=127.22 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=81.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
++|||+|||+.+|+++|+++|.+||.|..|.++.+ ++|||||+|.+.++|.+|+ .||+..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 6899999999999999999 59999999999999998765
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEcCCC
Q 007742 300 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLH 330 (591)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 330 (591)
........+ .........|||+||+
T Consensus 76 ~~~~~~~~~------~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRP------PARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSC------CCSCCCCSCCCSCCCC
T ss_pred CCcccCCCC------CccccCCCceecCCCC
Confidence 532211111 1112234789999996
No 102
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=6.9e-16 Score=131.46 Aligned_cols=86 Identities=26% Similarity=0.392 Sum_probs=79.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
...+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445789999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCccccc
Q 007742 295 PSEAEKN 301 (591)
Q Consensus 295 ~~~~~~~ 301 (591)
++.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9876543
No 103
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-16 Score=124.30 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.+.++|||+|||+.+|+++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45689999999999999999999999999999999999999999999999999999999999 59999999999988765
Q ss_pred c
Q 007742 297 E 297 (591)
Q Consensus 297 ~ 297 (591)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=5.6e-16 Score=128.02 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEe
Q 007742 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293 (591)
Q Consensus 214 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v 293 (591)
.+.....++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..||..++..|.|+.|.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 34455679999999999999999999999999999999999999999999999999999999999987778899999999
Q ss_pred ccCccc
Q 007742 294 KPSEAE 299 (591)
Q Consensus 294 ~~~~~~ 299 (591)
.++.+.
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 987653
No 105
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.7e-16 Score=127.81 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=78.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVR--------DVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLL 287 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--------~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~ 287 (591)
..+.++|||+|||+.+|+++|+++|..||.|. .|.|+.++.+|.++|||||+|.+.++|.+|| .||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44679999999999999999999999999999 6999999999999999999999999999999 59999999
Q ss_pred CeeEEeccCccccc
Q 007742 288 GQPVMVKPSEAEKN 301 (591)
Q Consensus 288 g~~i~v~~~~~~~~ 301 (591)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999876543
No 106
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=125.52 Aligned_cols=84 Identities=31% Similarity=0.472 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEe
Q 007742 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293 (591)
Q Consensus 215 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v 293 (591)
......++|||+|||+.+|+++|+++|..||.|..|.|+.++ +|.++|||||+|.+.++|..|| .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567999999999999999999999999999999999987 4899999999999999999999 59999999999999
Q ss_pred ccCccc
Q 007742 294 KPSEAE 299 (591)
Q Consensus 294 ~~~~~~ 299 (591)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 987643
No 107
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=119.92 Aligned_cols=83 Identities=30% Similarity=0.540 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 317 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
..+..++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK-QLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE-EETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEE
Confidence 3445689999999999999999999999999999999999888899999999999999999999999995 799999999
Q ss_pred EEec
Q 007742 397 SSVT 400 (591)
Q Consensus 397 ~~~~ 400 (591)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9863
No 108
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=123.89 Aligned_cols=85 Identities=22% Similarity=0.387 Sum_probs=77.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEecc
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 295 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~ 295 (591)
...+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 34467899999999999999999999999999999999999999999999999999999999998 57789999999999
Q ss_pred Cccccc
Q 007742 296 SEAEKN 301 (591)
Q Consensus 296 ~~~~~~ 301 (591)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 876543
No 109
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-16 Score=127.18 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=73.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|+++|..||. +.|.|+.++ +|.++|||||+|.+.++|.+||.+|+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 445689999999999999999999999995 599999998 899999999999999999999999999999999999876
Q ss_pred cc
Q 007742 297 EA 298 (591)
Q Consensus 297 ~~ 298 (591)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 110
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-15 Score=122.81 Aligned_cols=85 Identities=22% Similarity=0.475 Sum_probs=76.8
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEE
Q 007742 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVM 292 (591)
Q Consensus 214 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~ 292 (591)
.......++|||+|||+.+|+++|.++|..||.|..|.|+.+.. .++|||||+|.+.++|.+|+ .||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455679999999999999999999999999999999998865 38999999999999999999 5999999999999
Q ss_pred eccCcccc
Q 007742 293 VKPSEAEK 300 (591)
Q Consensus 293 v~~~~~~~ 300 (591)
|.++....
T Consensus 87 v~~a~~~~ 94 (103)
T 2cq3_A 87 VNNATARV 94 (103)
T ss_dssp EEECCSSC
T ss_pred EEEcccCC
Confidence 99987654
No 111
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=7.4e-16 Score=135.57 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAG--KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..++|||+|||+.+|+++|.++|..|| .|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 9999999999999999999999999999999999 5799999999999998
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.1e-15 Score=116.81 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=73.8
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEE
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 575 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l 575 (591)
..+.-|+|+|| +..++ +++|+++|.+||.|.++.+.. ++|||||+|.+.++|.+|++.|||..|+|++|
T Consensus 5 ~~~~wL~VgNL--~~~~t--------e~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 5 WGSSWLLLKNL--TAQID--------GPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCCEEEEECC--CTTCC--------CHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CccceEEEeCC--CccCC--------HHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34556999999 77777 799999999999999999864 79999999999999999999999999999999
Q ss_pred EEEEeCchhhhhcc
Q 007742 576 SAIFMKPEDYEAKF 589 (591)
Q Consensus 576 ~v~~~~~~~~~~~~ 589 (591)
.|.++++......+
T Consensus 74 ~V~~A~e~~~~~~~ 87 (89)
T 2wbr_A 74 FAESPSENEVQSIM 87 (89)
T ss_dssp EEECCCHHHHHHHH
T ss_pred EEEECCHHHHHHHh
Confidence 99999987765443
No 113
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=6.4e-16 Score=132.41 Aligned_cols=85 Identities=15% Similarity=0.298 Sum_probs=77.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--EEEeecCCCCCccceEEEEecCcchHHHHH-HHcCC----ccCC
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRD--VRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQ----LLLG 288 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~----~i~g 288 (591)
.....++|||+|||+.+|+++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+. +|..|+ .|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999999999999999999999 999999 69999 9999
Q ss_pred eeEEeccCccccc
Q 007742 289 QPVMVKPSEAEKN 301 (591)
Q Consensus 289 ~~i~v~~~~~~~~ 301 (591)
+.|.|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999998876543
No 114
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=1.2e-15 Score=125.80 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|.++|..||.|..|.|+.+. +|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999999999999998 8999999999999999999999 5999999999999987
Q ss_pred Cc
Q 007742 296 SE 297 (591)
Q Consensus 296 ~~ 297 (591)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 63
No 115
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=123.22 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4456799999999999999999999999999999999998654 6899999999999999999 599999999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 987644
No 116
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=122.76 Aligned_cols=80 Identities=35% Similarity=0.555 Sum_probs=74.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|+++|.+||.|..|.++.++. |.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34569999999999999999999999999999999999986 8999999999999999999995 999999999999988
Q ss_pred Cc
Q 007742 296 SE 297 (591)
Q Consensus 296 ~~ 297 (591)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 117
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=8.1e-15 Score=122.60 Aligned_cols=85 Identities=27% Similarity=0.493 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 34589999999999999999999999999999999999878999999999999999999999999996 69999999999
Q ss_pred ecCCCC
Q 007742 399 VTDHVG 404 (591)
Q Consensus 399 ~~~~~~ 404 (591)
+.....
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 876544
No 118
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=131.10 Aligned_cols=85 Identities=24% Similarity=0.453 Sum_probs=79.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|.++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445699999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred Cccccc
Q 007742 296 SEAEKN 301 (591)
Q Consensus 296 ~~~~~~ 301 (591)
+.....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 119
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=8.1e-16 Score=122.02 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=75.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC-ccceEEEEecCcchHHHHHH-HcCCccCCeeEEeccC
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR-SKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 296 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~-~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~~ 296 (591)
..++|||+|||+.+|+++|.++|.+||.|..|.++.+..++. ++|||||+|.+.++|.+|+. |||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999987766 89999999999999999994 9999999999999987
Q ss_pred ccc
Q 007742 297 EAE 299 (591)
Q Consensus 297 ~~~ 299 (591)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 120
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=123.14 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=69.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-Hc--CCccCCeeEEec
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LS--GQLLLGQPVMVK 294 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~--g~~i~g~~i~v~ 294 (591)
.+.++|||+|||+.+|+++|+++|.+||.|.+|.|+.+ +|||||+|.+.++|..|+. ++ +..|.|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35699999999999999999999999999999999864 7999999999999999995 75 478999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 986544
No 121
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=122.45 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=73.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 217 ERDQRTVFAYQMPLKATERDVY----EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
....++|||+|||+.+|+++|+ ++|.+||.|..|.++.++.+ +|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998775 899999999999999999 599999999999
Q ss_pred EeccCccc
Q 007742 292 MVKPSEAE 299 (591)
Q Consensus 292 ~v~~~~~~ 299 (591)
.|.++.+.
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99988654
No 122
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=124.83 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRD-VRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~-v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|+++|..||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.+++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345699999999999999999999999999987 888888 789999999999999999999997799999999999987
Q ss_pred Ccc
Q 007742 296 SEA 298 (591)
Q Consensus 296 ~~~ 298 (591)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 654
No 123
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-15 Score=128.38 Aligned_cols=80 Identities=24% Similarity=0.398 Sum_probs=75.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445699999999999999999999999999999999999999999999999999999999999 5999999999999987
Q ss_pred C
Q 007742 296 S 296 (591)
Q Consensus 296 ~ 296 (591)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=120.31 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCc--cCCeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQL--LLGQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~--i~g~~i~v 293 (591)
..++++|||+|||+.+|+++|.++|.+||.|.+|.+++ .+|||||+|.+.++|..|+ .|++.. |.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 44679999999999999999999999999999999984 4799999999999999999 688775 78999999
Q ss_pred ccCccc
Q 007742 294 KPSEAE 299 (591)
Q Consensus 294 ~~~~~~ 299 (591)
.++..+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998653
No 125
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.2e-15 Score=119.17 Aligned_cols=83 Identities=33% Similarity=0.527 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
.++.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 344689999999999999999999999999999999999888999999999999999999999999995 7999999999
Q ss_pred EecC
Q 007742 398 SVTD 401 (591)
Q Consensus 398 ~~~~ 401 (591)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8753
No 126
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=127.21 Aligned_cols=82 Identities=32% Similarity=0.480 Sum_probs=73.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-CCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR-NSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~-~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|.++|..|| |..|.++.++ .+|.++|||||+|.+.++|..|+.|||..|.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 344679999999999999999999999999 9999999998 68999999999999999999999999999999999999
Q ss_pred cCcc
Q 007742 295 PSEA 298 (591)
Q Consensus 295 ~~~~ 298 (591)
++..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8764
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=4.7e-16 Score=133.66 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=78.4
Q ss_pred eEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHh
Q 007742 264 VGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLF 342 (591)
Q Consensus 264 ~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 342 (591)
++|++|.+...+..|| .++|....|... +.+.. ........++|||+|||..+++++|+++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~----------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR----------------PPPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp ------------------------------CCSCC----------------SCSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC----------------CCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5677777777788888 577766555431 11111 11112234899999999999999999999
Q ss_pred ccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 343 EPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 343 ~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.++...
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQMARYG 127 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC-CSSSSCCEEEECCCC
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECCCC
Confidence 99999999999998888999999999999999999999999996 699999999998654
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=119.06 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=72.8
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc--cC
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW--FA 571 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~--~~ 571 (591)
..+|+++|+|+|| |..++ +++|.++|+.||.|.+|.+.+ .+|+|||+|.+.++|..|+..|+|.. |.
T Consensus 17 ~~~ps~~l~V~NL--p~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 17 KTPASPVVHIRGL--IDGVV--------EADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCCCCSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred cCCCCcEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 4578899999999 88888 899999999999999998874 68999999999999999999999986 78
Q ss_pred CeEEEEEEeCchh
Q 007742 572 RRLISAIFMKPED 584 (591)
Q Consensus 572 g~~l~v~~~~~~~ 584 (591)
|++|.|+|++.+.
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999998754
No 129
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-15 Score=119.51 Aligned_cols=84 Identities=36% Similarity=0.561 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ-VFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE-ESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 3589999999999999999999999999999999999888999999999999999999999999995 799999999998
Q ss_pred cCCCC
Q 007742 400 TDHVG 404 (591)
Q Consensus 400 ~~~~~ 404 (591)
.....
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 76543
No 130
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=3.3e-15 Score=117.59 Aligned_cols=79 Identities=41% Similarity=0.679 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||+|||+.+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 3589999999999999999999999999999999998778999999999999999999999999996 699999999986
No 131
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=120.83 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|+++|..| .|..|.++.+ .+|.++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 4467999999999999999999999999 9999999999 7799999999999999999999999999999999999987
Q ss_pred ccc
Q 007742 297 EAE 299 (591)
Q Consensus 297 ~~~ 299 (591)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 654
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=4e-16 Score=119.65 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=71.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 222 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
+|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+.+++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999988999999999988753
No 133
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-16 Score=125.73 Aligned_cols=80 Identities=29% Similarity=0.423 Sum_probs=74.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
...+|||+|||+.+|+++|+++|..| .|..|.|+.++. |.++|||||+|.+.++|.+||.+|+..|.|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 35899999999999999999999999 899999999976 9999999999999999999999999999999999987765
Q ss_pred cc
Q 007742 299 EK 300 (591)
Q Consensus 299 ~~ 300 (591)
..
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 134
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-15 Score=120.56 Aligned_cols=84 Identities=38% Similarity=0.626 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEe
Confidence 34589999999999999999999999999999999998888999999999999999999999999995 79999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 135
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=3e-15 Score=133.78 Aligned_cols=135 Identities=24% Similarity=0.286 Sum_probs=78.3
Q ss_pred EEecCcchHHHHH-HHcCCccC--CeeEEeccCccccccc-ccc---CCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHH
Q 007742 267 IEFYDVMSVPMAI-ALSGQLLL--GQPVMVKPSEAEKNLV-QSN---TSAGGTATGPYGAIDRKLYVGNLHFNMTETQLR 339 (591)
Q Consensus 267 V~F~~~e~A~~Al-~l~g~~i~--g~~i~v~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 339 (591)
.+|...++|..|+ .+++.... |+.+.+.+........ ... ...............++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7888999999998 57766554 5555554432211000 000 000011112223445899999999999999999
Q ss_pred HHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecCC
Q 007742 340 KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 402 (591)
Q Consensus 340 ~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~~ 402 (591)
++|..||.|..|.|+.+..++.++|||||+|.+.++|..||..|||. .|.|+.|.|.++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEESEEC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEEecCC
Confidence 99999999999999999889999999999999999999999999996 799999999998654
No 136
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.9e-16 Score=126.65 Aligned_cols=84 Identities=33% Similarity=0.568 Sum_probs=78.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3589999999999999999999999999999999999989999999999999999999999 599999999999999887
Q ss_pred ccccc
Q 007742 298 AEKNL 302 (591)
Q Consensus 298 ~~~~~ 302 (591)
.....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 65543
No 137
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=126.82 Aligned_cols=82 Identities=26% Similarity=0.439 Sum_probs=77.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCccc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~~ 299 (591)
.++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|..||.+++..|.|+.|.|.++.+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 48999999999999999999999999999999999999999999999999999999999977999999999999998765
Q ss_pred cc
Q 007742 300 KN 301 (591)
Q Consensus 300 ~~ 301 (591)
..
T Consensus 107 ~~ 108 (116)
T 1x4b_A 107 EE 108 (116)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 138
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=2.6e-15 Score=120.10 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=74.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|+++|.+||.|..|.++.+ +|.++|||||+|.+.++|..|+ .||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345799999999999999999999999999999999974 6889999999999999999999 5999999999999998
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8654
No 139
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=2.4e-15 Score=134.48 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=78.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 86644
No 140
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=5.6e-15 Score=115.68 Aligned_cols=80 Identities=29% Similarity=0.597 Sum_probs=75.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
.+|||+|||..+++++|+++|..||.|..|.++.+..++.++|||||+|.+.++|..|+..|||. .+.|+.|.|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC-eeCCcEEEEEecCc
Confidence 68999999999999999999999999999999999889999999999999999999999999996 69999999999865
Q ss_pred C
Q 007742 402 H 402 (591)
Q Consensus 402 ~ 402 (591)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 141
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.2e-15 Score=119.89 Aligned_cols=84 Identities=32% Similarity=0.456 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF-GYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 344689999999999999999999999999999999999888999999999999999999999999996 6999999999
Q ss_pred EecCC
Q 007742 398 SVTDH 402 (591)
Q Consensus 398 ~~~~~ 402 (591)
++...
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98654
No 142
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=117.23 Aligned_cols=80 Identities=29% Similarity=0.527 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
..+|||+|||..+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTNWAT 84 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEEC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEecC
Confidence 489999999999999999999999999999999998878999999999999999999999999996 6999999999986
Q ss_pred C
Q 007742 401 D 401 (591)
Q Consensus 401 ~ 401 (591)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 143
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=8.1e-16 Score=123.92 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=74.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|||+|||+.+|+++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4589999999999999999999999999999999999999999999999999999999999 599999999999998764
No 144
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=123.99 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
...++|||+|||+.+|+++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999999999999998889999899999999999999999999999 79999999999999987
Q ss_pred cc
Q 007742 297 EA 298 (591)
Q Consensus 297 ~~ 298 (591)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 145
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=123.38 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCe
Q 007742 217 ERDQRTVFAYQMPLKA------TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ 289 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~ 289 (591)
....++|||+|||+.+ |+++|..+|.+||.|..|.++ ..+|.++|||||+|.+.++|..|+ .|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4456899999999999 789999999999999999988 467899999999999999999999 5999999998
Q ss_pred -eEEeccCcc
Q 007742 290 -PVMVKPSEA 298 (591)
Q Consensus 290 -~i~v~~~~~ 298 (591)
+|.|.++..
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999998754
No 146
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.3e-15 Score=123.72 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=76.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEe-ecCCCCCccceEEEEecCcchHHHHH-HHc--CCccCCeeEE
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGK-VRDVRLI-MDRNSRRSKGVGYIEFYDVMSVPMAI-ALS--GQLLLGQPVM 292 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~~~-~d~~~g~~~G~afV~F~~~e~A~~Al-~l~--g~~i~g~~i~ 292 (591)
.+.++|||+|||+.+|+++|.++|..||. |..|.++ .+..+|.++|||||+|.+.++|..|+ .|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 78888999999999999999999999 585 5889999999
Q ss_pred eccCccccc
Q 007742 293 VKPSEAEKN 301 (591)
Q Consensus 293 v~~~~~~~~ 301 (591)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999876554
No 147
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=1.9e-15 Score=128.32 Aligned_cols=80 Identities=28% Similarity=0.502 Sum_probs=76.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCccc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~~ 299 (591)
.++|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+.|||..|.|+.|.|.++...
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999988643
No 148
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=9.5e-15 Score=118.54 Aligned_cols=83 Identities=29% Similarity=0.529 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+. |++. .|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~l~V~~ 85 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH-DIMGKKVEVKR 85 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC-BSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC-EECCeEEEEEE
Confidence 345899999999999999999999999999999999998889999999999999999999997 9996 69999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+....
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 87543
No 149
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.1e-16 Score=131.73 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|.++|..||.|..+.++.+..+|.++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 44569999999999999999999999999999877777778899999999999999999999999999999999999887
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
....
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 150
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.7e-15 Score=118.48 Aligned_cols=83 Identities=46% Similarity=0.814 Sum_probs=77.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.+++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF-ELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEEc
Confidence 3489999999999999999999999999999999999888999999999999999999999999996 699999999998
Q ss_pred cCCC
Q 007742 400 TDHV 403 (591)
Q Consensus 400 ~~~~ 403 (591)
.+..
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 151
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=1.3e-15 Score=127.66 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGK---VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v 293 (591)
....++|||+|||+.+|+++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|.+||.+|+..|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345799999999999999999999999999 89999999987 99999999999999999999999999999999999
Q ss_pred ccCcccc
Q 007742 294 KPSEAEK 300 (591)
Q Consensus 294 ~~~~~~~ 300 (591)
.++....
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 8876544
No 152
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=6.7e-15 Score=118.69 Aligned_cols=81 Identities=32% Similarity=0.591 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
+++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-QLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEEcC
Confidence 479999999999999999999999999999999999888999999999999999999999999996 7999999999986
Q ss_pred CC
Q 007742 401 DH 402 (591)
Q Consensus 401 ~~ 402 (591)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 153
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=117.14 Aligned_cols=75 Identities=23% Similarity=0.417 Sum_probs=70.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEeccC
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 296 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~~ 296 (591)
++|||+|||+.+|+++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+|+. ++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999996 55 8999999999865
No 154
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-15 Score=120.78 Aligned_cols=84 Identities=36% Similarity=0.652 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||+.+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..||+. .|.|+.|.|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK-SVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC-CTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 34589999999999999999999999999999999998888899999999999999999999999996 69999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 87654
No 155
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=4.9e-15 Score=125.72 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=76.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|.++|..||.|..|.++.+. +|.++|||||+|.+.++|..|+. |||..|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4466999999999999999999999999999999999998 89999999999999999999994 999999999999998
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 7653
No 156
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=123.13 Aligned_cols=85 Identities=22% Similarity=0.471 Sum_probs=75.8
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCee
Q 007742 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQP 290 (591)
Q Consensus 212 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~ 290 (591)
.........++|||+|||..+|+++|.++|.+||.|..|.++.+.. .++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3344455679999999999999999999999999999999998853 48999999999999999999 59999999999
Q ss_pred EEeccCcc
Q 007742 291 VMVKPSEA 298 (591)
Q Consensus 291 i~v~~~~~ 298 (591)
|.|.++..
T Consensus 99 l~V~~a~~ 106 (109)
T 2err_A 99 IEVNNATA 106 (109)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99998765
No 157
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=5.3e-15 Score=113.12 Aligned_cols=73 Identities=26% Similarity=0.324 Sum_probs=68.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
+..|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|..|++.||+ ..+.|++|.|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~-~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN-CVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT-EEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEEECC
Confidence 47899999999999999999999999999999865 589999999999999999999999 48999999999874
No 158
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-14 Score=117.08 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGM-TIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 335899999999999999999999999999999999987 8999999999999999999999999995 79999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+.+.
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 159
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=5.1e-16 Score=123.71 Aligned_cols=79 Identities=33% Similarity=0.579 Sum_probs=72.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCccc
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 299 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~~~ 299 (591)
++|||+|||+.+|+++|.++|.+||.|..|.++.++.+|.++|||||+|.+.+ |..|+ .|||..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999 59999999999999988664
Q ss_pred c
Q 007742 300 K 300 (591)
Q Consensus 300 ~ 300 (591)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 160
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-14 Score=120.05 Aligned_cols=84 Identities=30% Similarity=0.510 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhc------CCeeeCCe
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN------GKLEIVGR 392 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~------g~~~~~g~ 392 (591)
...++|||+|||+.+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..||..|+ + ..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG-LKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC-EESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC-cEEcCE
Confidence 345899999999999999999999999999999999998889999999999999999999999999 8 479999
Q ss_pred EEEEEEecCCC
Q 007742 393 TLKVSSVTDHV 403 (591)
Q Consensus 393 ~l~v~~~~~~~ 403 (591)
.|.|.++.+..
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999987643
No 161
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.2e-15 Score=130.33 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGK---VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v 293 (591)
....++|||+|||+.+|+++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|.+||.+|+..|.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 345689999999999999999999999999 88999999987 99999999999999999999999999999999999
Q ss_pred ccCcccc
Q 007742 294 KPSEAEK 300 (591)
Q Consensus 294 ~~~~~~~ 300 (591)
.++....
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 8875443
No 162
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.7e-15 Score=119.95 Aligned_cols=84 Identities=33% Similarity=0.545 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|..|+..|++. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI-KLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC-BCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEE
Confidence 34589999999999999999999999999999999999888999999999999999999999999996 69999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+....
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 86543
No 163
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=120.28 Aligned_cols=83 Identities=33% Similarity=0.508 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA-ELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC-CBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 34589999999999999999999999999999999999888999999999999999999999999996 69999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8754
No 164
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=8.3e-16 Score=126.62 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=76.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGK---VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v 293 (591)
....++|||+|||+.+|+++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|.+||.+|+..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 446799999999999999999999999998 89999999988 99999999999999999999999999999999999
Q ss_pred ccCcccc
Q 007742 294 KPSEAEK 300 (591)
Q Consensus 294 ~~~~~~~ 300 (591)
.++....
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 8876544
No 165
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.1e-15 Score=119.47 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcC--CccCCeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSG--QLLLGQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g--~~i~g~~i~v 293 (591)
..++++|||+|||+.+|+++|.++|.+||.|..|.++.+ +|||||+|.+.++|..|+ .|++ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345799999999999999999999999999999998753 799999999999999999 4765 4599999999
Q ss_pred ccCcccc
Q 007742 294 KPSEAEK 300 (591)
Q Consensus 294 ~~~~~~~ 300 (591)
.++....
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9987644
No 166
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=118.11 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=66.6
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCe-eE
Q 007742 220 QRTVFAYQMPLKA------TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQ-PV 291 (591)
Q Consensus 220 ~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~-~i 291 (591)
+++|||+|||+.+ |+++|.++|.+||.|..|.++ +.+|.++|||||+|.+.++|..|+ .|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 789999999999999999987 467899999999999999999999 5999999999 88
Q ss_pred Ee
Q 007742 292 MV 293 (591)
Q Consensus 292 ~v 293 (591)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 167
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=4.2e-15 Score=131.65 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=78.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999999999999999999999999999999999999999999999 4999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 86543
No 168
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.3e-15 Score=121.91 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=69.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHc--CCccCCeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALS--GQLLLGQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~--g~~i~g~~i~v 293 (591)
..++++|||+|||+.+|+++|+++|.+||.|..|.|+.+ +|||||+|.+.++|.+|+ .++ +..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999864 799999999999999999 466 56899999999
Q ss_pred ccCcccc
Q 007742 294 KPSEAEK 300 (591)
Q Consensus 294 ~~~~~~~ 300 (591)
.++....
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9986544
No 169
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=120.93 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCC--ccCCeeEEe
Q 007742 218 RDQRTVFAYQMPL-KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQ--LLLGQPVMV 293 (591)
Q Consensus 218 ~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~--~i~g~~i~v 293 (591)
.++++|||+|||+ .+|+++|.++|.+||.|.+|.|+.+ +|||||+|.+.++|..|+ .||+. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3579999999999 9999999999999999999999864 589999999999999999 57754 599999999
Q ss_pred ccCcccc
Q 007742 294 KPSEAEK 300 (591)
Q Consensus 294 ~~~~~~~ 300 (591)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9987544
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=2.4e-15 Score=126.26 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCee--EEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVR--DVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
....++|||+|||+.+|+++|+++|..| .|+ .|.|+.++. |.++|||||+|.+.++|.+||.+++..|.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3456899999999999999999999999 566 899999987 999999999999999999999888999999999998
Q ss_pred cCcc
Q 007742 295 PSEA 298 (591)
Q Consensus 295 ~~~~ 298 (591)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7654
No 171
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=8.1e-15 Score=120.71 Aligned_cols=83 Identities=53% Similarity=0.872 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
+.+++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF-ELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 34589999999999999999999999999999999999888999999999999999999999999996 69999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+++.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8654
No 172
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=1.5e-14 Score=120.90 Aligned_cols=84 Identities=29% Similarity=0.410 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
+..++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..||+. .|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF-QIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 34589999999999999999999999999999999999888999999999999999999999999996 79999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87543
No 173
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=9.5e-15 Score=118.52 Aligned_cols=80 Identities=33% Similarity=0.426 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 390 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~ 390 (591)
+...+|||+|||..+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|..|+..|||. .|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~-~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC-BSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC-EeC
Confidence 34589999999999999999999999999999 999998888999999999999999999999999996 799
Q ss_pred CeEEEEEEe
Q 007742 391 GRTLKVSSV 399 (591)
Q Consensus 391 g~~l~v~~~ 399 (591)
|+.|.|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999886
No 174
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-15 Score=123.49 Aligned_cols=91 Identities=29% Similarity=0.490 Sum_probs=79.6
Q ss_pred CCCcceEEEeccCCCCC-CCCchhhhhHHHHHHHHhccccceEEEEEe-cCCCeeEEEEeCCHHHHHHHHHHhcccccCC
Q 007742 495 GSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~-~~~~~~~~~~~edl~~~f~~~G~V~~v~l~-~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
+.++++|+|.||+.+.. ..++.++.+++++|.++|++||.|..|.|. ..++|+|||+|.+.++|.+|+..|||..|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 56788999999977764 335677888999999999999999999774 3478999999999999999999999999999
Q ss_pred eEEEEEEeCchhh
Q 007742 573 RLISAIFMKPEDY 585 (591)
Q Consensus 573 ~~l~v~~~~~~~~ 585 (591)
++|.|.|+.+...
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999987543
No 175
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5e-14 Score=117.57 Aligned_cols=83 Identities=27% Similarity=0.417 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|..|+..||+. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ-LLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC-EeCCCEEEEE
Confidence 3446899999999999999999999999999999999887 6889999999999999999999999996 6999999999
Q ss_pred EecCC
Q 007742 398 SVTDH 402 (591)
Q Consensus 398 ~~~~~ 402 (591)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98653
No 176
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=124.93 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 217 ERDQRTVFAYQMPLKATERDVY----EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
..+.++|||+|||+.+++++|+ ++|.+||.|..|.+.. +|.++|||||+|.+.++|..|+ .|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999988753 5788999999999999999999 699999999999
Q ss_pred EeccCccccc
Q 007742 292 MVKPSEAEKN 301 (591)
Q Consensus 292 ~v~~~~~~~~ 301 (591)
.|.++.....
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999876543
No 177
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=123.68 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HHHhcCCCeeEEEEeecCCCC---CccceEEEEecCcchHHHHH-HHcCCccCCee
Q 007742 218 RDQRTVFAYQMPLKATERDVY---EFFSKAGKVRDVRLIMDRNSR---RSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQP 290 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~---~~f~~~G~i~~v~~~~d~~~g---~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~ 290 (591)
.+.++|||+|||+.+|+++|. ++|.+||.|..|.++.+..++ .++|||||+|.+.++|.+|| .|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999987754 45699999999999999999 58999999999
Q ss_pred EEeccCcccc
Q 007742 291 VMVKPSEAEK 300 (591)
Q Consensus 291 i~v~~~~~~~ 300 (591)
|.|.++.+..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999987654
No 178
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=119.07 Aligned_cols=85 Identities=34% Similarity=0.594 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecc-CCCCCcccEEEEEeCCHHHHHHHHHHh-cCCeeeCCeEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD-IETGQCKGFGFVQFAQLEHAKAAQSAL-NGKLEIVGRTLK 395 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~-~~~~~~~g~a~Vef~~~~~a~~a~~~l-~g~~~~~g~~l~ 395 (591)
....++|||+|||..+++++|+++|..||.|..|.|+.+ ..++.++|||||+|.+.++|..|+..| |+. .|.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST-HLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC-BSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC-eECCCEEE
Confidence 344689999999999999999999999999999999988 678899999999999999999999999 885 69999999
Q ss_pred EEEecCCC
Q 007742 396 VSSVTDHV 403 (591)
Q Consensus 396 v~~~~~~~ 403 (591)
|.++....
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99987643
No 179
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=2.3e-15 Score=122.24 Aligned_cols=80 Identities=28% Similarity=0.429 Sum_probs=75.7
Q ss_pred CceEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC-eE
Q 007742 321 DRKLYVGNLHF------NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-RT 393 (591)
Q Consensus 321 ~~~l~v~nl~~------~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g-~~ 393 (591)
+++|||+|||. .+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.| +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK-RLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-BSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-ccCCCeE
Confidence 48999999999 9999999999999999999999999888999999999999999999999999996 6999 99
Q ss_pred EEEEEecC
Q 007742 394 LKVSSVTD 401 (591)
Q Consensus 394 l~v~~~~~ 401 (591)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99998754
No 180
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=7.3e-16 Score=125.70 Aligned_cols=82 Identities=13% Similarity=0.251 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 346799999999999999999999999999888 6777777889999999999999999999999999999999999988
Q ss_pred ccc
Q 007742 297 EAE 299 (591)
Q Consensus 297 ~~~ 299 (591)
...
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 181
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=1.7e-15 Score=130.09 Aligned_cols=84 Identities=21% Similarity=0.375 Sum_probs=78.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86543
No 182
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.5e-15 Score=118.14 Aligned_cols=82 Identities=29% Similarity=0.529 Sum_probs=76.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELV-QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v-~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.++|||+|||..+++++|+++|+.||.|..| .|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a 83 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ-YLCNRPITVSYA 83 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC-EETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEEe
Confidence 4899999999999999999999999999999 99998778999999999999999999999999996 699999999998
Q ss_pred cCCC
Q 007742 400 TDHV 403 (591)
Q Consensus 400 ~~~~ 403 (591)
.+..
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 183
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-14 Score=119.30 Aligned_cols=81 Identities=20% Similarity=0.319 Sum_probs=73.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|+++|.+||.|..|.|..+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345699999999999999999999999999999999654 457999999999999999999 7999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86643
No 184
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-14 Score=118.94 Aligned_cols=84 Identities=33% Similarity=0.472 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 317 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 317 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
.....++|||.|||..+++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|..||..|++ .|.|+.|.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEEEE
Confidence 344568999999999999999999999999999999999988899999999999999999999999998 499999999
Q ss_pred EEecCC
Q 007742 397 SSVTDH 402 (591)
Q Consensus 397 ~~~~~~ 402 (591)
.++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998654
No 185
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=118.01 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=75.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE---TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~---~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
..++|||+|||..+++++|+++|+.||.|..|.|+.+.. ++.++|||||+|.+.++|..|+..|||. .|.|+.|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH-TVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC-EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEE
Confidence 358999999999999999999999999999999998765 5588999999999999999999999996 699999999
Q ss_pred EEecCCC
Q 007742 397 SSVTDHV 403 (591)
Q Consensus 397 ~~~~~~~ 403 (591)
.++....
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9986543
No 186
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=3.4e-15 Score=121.97 Aligned_cols=81 Identities=27% Similarity=0.521 Sum_probs=75.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~ 297 (591)
...++|||+|||+.+|+++|.++|..||.|..|.++.+. +|.++|||||+|.+.++|..|+. ++..|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 356899999999999999999999999999999999998 89999999999999999999999 9999999999998876
Q ss_pred ccc
Q 007742 298 AEK 300 (591)
Q Consensus 298 ~~~ 300 (591)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 187
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=7.6e-15 Score=127.61 Aligned_cols=81 Identities=16% Similarity=0.363 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446799999999999999999999999999999999999999999999999999999999999 699999999999997
Q ss_pred cC
Q 007742 295 PS 296 (591)
Q Consensus 295 ~~ 296 (591)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 188
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=121.71 Aligned_cols=81 Identities=23% Similarity=0.470 Sum_probs=73.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCcc--------C
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLL--------L 287 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i--------~ 287 (591)
..+.++|||+|||+.+|+++|+++|..||.|..|.|+.+. +|.++|||||+|.+.++|..|+ .|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456999999999999999999999999999999999998 8999999999999999999999 5999999 5
Q ss_pred CeeEEeccCcc
Q 007742 288 GQPVMVKPSEA 298 (591)
Q Consensus 288 g~~i~v~~~~~ 298 (591)
+++|.|.++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 66777777653
No 189
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=116.80 Aligned_cols=80 Identities=38% Similarity=0.557 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGI-RLYGRPINVSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCC-EECCCEEEEEE
Confidence 345899999999999999999999999999999999887 4889999999999999999999999996 69999999998
Q ss_pred ec
Q 007742 399 VT 400 (591)
Q Consensus 399 ~~ 400 (591)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 190
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=117.07 Aligned_cols=81 Identities=33% Similarity=0.574 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||+|||+.+++++|+++|..||.|..|.|+.+ ++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~a 90 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR-IVATKPLYVALA 90 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEEe
Confidence 4589999999999999999999999999999999987 7889999999999999999999999996 699999999998
Q ss_pred cCCC
Q 007742 400 TDHV 403 (591)
Q Consensus 400 ~~~~ 403 (591)
....
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 7644
No 191
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=1.9e-14 Score=118.70 Aligned_cols=80 Identities=29% Similarity=0.487 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV-PLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 445899999999999999999999999999999999998 8999999999999999999999999996 69999999998
Q ss_pred ec
Q 007742 399 VT 400 (591)
Q Consensus 399 ~~ 400 (591)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 192
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=119.69 Aligned_cols=82 Identities=28% Similarity=0.503 Sum_probs=76.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.+++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 100 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDWC 100 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEEee
Confidence 3589999999999999999999999999999999999888999999999999999999999999996 699999999998
Q ss_pred cCC
Q 007742 400 TDH 402 (591)
Q Consensus 400 ~~~ 402 (591)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 653
No 193
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=1.7e-14 Score=119.58 Aligned_cols=83 Identities=31% Similarity=0.514 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 34589999999999999999999999999999999998888999999999999999999999999996 69999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+...
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8653
No 194
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=119.16 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcc--cccCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM--RWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g--~~~~g 572 (591)
+.+..+|+|+|| |+.++ +++|.++|+.||.|..|.|... +|||||+|.+.++|..|+..|++ ..|.|
T Consensus 13 ~~~~~~LfV~nL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 13 GVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCEEEECSC--CTTSC--------HHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 456789999999 88888 8999999999999999998864 89999999999999999998864 78999
Q ss_pred eEEEEEEeCchhh
Q 007742 573 RLISAIFMKPEDY 585 (591)
Q Consensus 573 ~~l~v~~~~~~~~ 585 (591)
++|.|.|+.++..
T Consensus 82 r~l~V~~A~~~~~ 94 (105)
T 1sjq_A 82 QPIYIQFSNHKEL 94 (105)
T ss_dssp EECCBCCCSSSSC
T ss_pred EEEEEEEcCCCCC
Confidence 9999999987653
No 195
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=117.93 Aligned_cols=82 Identities=21% Similarity=0.195 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
+...+|||+|||+.+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|.+|+..|||. .|.|+.|.|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEE
Confidence 34589999999999999999999999999988888877778999999999999999999999999996 79999999999
Q ss_pred ecC
Q 007742 399 VTD 401 (591)
Q Consensus 399 ~~~ 401 (591)
+.+
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 196
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-14 Score=114.43 Aligned_cols=77 Identities=26% Similarity=0.401 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|.+||.|..|.++ +|||||+|.+.++|..|+ .||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3457999999999999999999999999999999987 689999999999999999 6999999999999999
Q ss_pred Cccccc
Q 007742 296 SEAEKN 301 (591)
Q Consensus 296 ~~~~~~ 301 (591)
+.....
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 197
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-14 Score=116.97 Aligned_cols=82 Identities=23% Similarity=0.512 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCC-CCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET-GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~-~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
.+.++|||+|||..+++++|+++|..|| |..|.|+.+..+ +.++|||||+|.+.++|.+|| .|++. .|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC-EETTEECEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC-EeCCcEEEEE
Confidence 3458999999999999999999999999 999999998877 899999999999999999999 99996 6999999999
Q ss_pred EecCCC
Q 007742 398 SVTDHV 403 (591)
Q Consensus 398 ~~~~~~ 403 (591)
++....
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987643
No 198
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.1e-15 Score=119.14 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|+++|.+||.| .++.+ .+|.++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567999999999999999999999999977 45555 678999999999999999999995 99999999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 987653
No 199
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=5.8e-15 Score=138.81 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=75.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAG--KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..++|||+|||+.+|+++|+++|..|| .|..|.|+.++.+|.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999999999999999999999999999999999 5999999999999998
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 200
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.9e-14 Score=115.81 Aligned_cols=81 Identities=28% Similarity=0.502 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..|| |..|.|+.+..++.++|||||+|.+.++|..|+ .|||. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~ 89 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA-LLGDRSLRVDI 89 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC-EETTEECEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC-eECCeEEEEEE
Confidence 3458999999999999999999999997 999999999888999999999999999999999 89995 79999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+...
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8654
No 201
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-14 Score=115.06 Aligned_cols=82 Identities=33% Similarity=0.536 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|..|+..|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGR-KILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCC-CcCCCeEEEE
Confidence 34468999999999999999999999999999999998753 36899999999999999999999995 7999999999
Q ss_pred EecCC
Q 007742 398 SVTDH 402 (591)
Q Consensus 398 ~~~~~ 402 (591)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2cqi_A 89 WATTP 93 (103)
T ss_dssp ECCCT
T ss_pred ECCCC
Confidence 98764
No 202
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=3.3e-14 Score=116.75 Aligned_cols=83 Identities=33% Similarity=0.512 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC---eEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG---RTLK 395 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g---~~l~ 395 (591)
+..++|||+|||..+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|||. .|.| +.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGS-QTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSC-CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCC-ccCCCCCccEE
Confidence 345899999999999999999999999999999999987 7899999999999999999999999996 5777 9999
Q ss_pred EEEecCCC
Q 007742 396 VSSVTDHV 403 (591)
Q Consensus 396 v~~~~~~~ 403 (591)
|.++....
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99987543
No 203
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.6e-14 Score=114.45 Aligned_cols=83 Identities=31% Similarity=0.587 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|..||.|..|.|+.+.. .++|||||+|.+.++|..|+..|+|. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 34458999999999999999999999999999999998753 37999999999999999999999996 6999999999
Q ss_pred EecCCC
Q 007742 398 SVTDHV 403 (591)
Q Consensus 398 ~~~~~~ 403 (591)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 987643
No 204
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=2.7e-15 Score=119.36 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=71.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
.+|||+|||..+++++|+++|+.|| .|..|.|+.+..+|.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS-CSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC-eeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999889999999999999999999999999996 699999999987
Q ss_pred cCC
Q 007742 400 TDH 402 (591)
Q Consensus 400 ~~~ 402 (591)
.+.
T Consensus 81 ~~~ 83 (90)
T 3p5t_L 81 NKL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 205
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=2.1e-14 Score=120.73 Aligned_cols=81 Identities=33% Similarity=0.482 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
.+..++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF-QVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC-EETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 344689999999999999999999999999999999998878999999999999999999999999996 7999999998
Q ss_pred Ee
Q 007742 398 SV 399 (591)
Q Consensus 398 ~~ 399 (591)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 206
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.4e-14 Score=118.36 Aligned_cols=84 Identities=32% Similarity=0.443 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVE--------LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 390 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--------~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~ 390 (591)
...++|||+|||..+++++|+++|..||.|. .|.|+.+..++.++|||||+|.+.++|..||..|||. .|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK-DFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC-EET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC-ccC
Confidence 3458999999999999999999999999998 6999998778999999999999999999999999996 699
Q ss_pred CeEEEEEEecCCC
Q 007742 391 GRTLKVSSVTDHV 403 (591)
Q Consensus 391 g~~l~v~~~~~~~ 403 (591)
|+.|.|.++....
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999986543
No 207
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=116.05 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=72.4
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc--ccccCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH--MRWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~--g~~~~g 572 (591)
..++++|+|+|| |..++ +++|.++|+.||.|..|.+... +|+|||+|.+.++|..|+..|+ +..|.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 12 GAPSRVLHIRKL--PGEVT--------ETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SSCCSEEEEESC--CTTCC--------HHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 467789999999 88888 8999999999999999988754 8999999999999999999875 567999
Q ss_pred eEEEEEEeCchhhh
Q 007742 573 RLISAIFMKPEDYE 586 (591)
Q Consensus 573 ~~l~v~~~~~~~~~ 586 (591)
++|.|.|+..+...
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 99999999877654
No 208
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=3.2e-14 Score=112.38 Aligned_cols=78 Identities=24% Similarity=0.517 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|..|+ .+++. .|.|+.|.|.++
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~-~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEH-RLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCE-EETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCC-EECCEEEEEEeC
Confidence 3589999999999999999999999999999999999888999999999999999999999 55775 699999999864
No 209
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=1.8e-14 Score=118.51 Aligned_cols=83 Identities=31% Similarity=0.480 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee---CCeEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI---VGRTLK 395 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~---~g~~l~ 395 (591)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|..|+..||+. .+ .|+.|.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ-KTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC-cccCCCCceEE
Confidence 34589999999999999999999999999999999999888999999999999999999999999996 46 889999
Q ss_pred EEEecCC
Q 007742 396 VSSVTDH 402 (591)
Q Consensus 396 v~~~~~~ 402 (591)
|.++...
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9998654
No 210
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=117.96 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=70.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC-----ee
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG-----QP 290 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g-----~~ 290 (591)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+|| .||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456799999999999999999999999999999999865 89999999999999999 599999999 99
Q ss_pred EEeccCcccc
Q 007742 291 VMVKPSEAEK 300 (591)
Q Consensus 291 i~v~~~~~~~ 300 (591)
|.|.++.+..
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999887644
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=6.7e-15 Score=120.85 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=70.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAG-KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
...++|||+|||+.+|+++|+++|.+|| .|..+.++.+ .++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 8999988643 47999999999999999999 6999999999999998
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7543
No 212
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=113.85 Aligned_cols=80 Identities=23% Similarity=0.556 Sum_probs=73.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCC-cccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQ-CKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~-~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+++|||+|||..+++++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++|..|+..|||. .|.|+.|.|.++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC-eECCeEEEEEEC
Confidence 47999999999999999999999999999999998876655 8999999999999999999999996 799999999998
Q ss_pred cC
Q 007742 400 TD 401 (591)
Q Consensus 400 ~~ 401 (591)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 213
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=2.9e-14 Score=116.54 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|.++|.+||.|..|.++ +|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456999999999999999999999999999999886 569999999999999999 5999999999999999
Q ss_pred Ccccccc
Q 007742 296 SEAEKNL 302 (591)
Q Consensus 296 ~~~~~~~ 302 (591)
+.+....
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 8765543
No 214
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=125.46 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEec
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKV----RDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVK 294 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i----~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~ 294 (591)
..++|||+|||+.+|+++|+++|.+||.| ..|.|+.+ .+|.++|||||+|.+.++|.+||.+|++.|.|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45899999999999999999999999975 68999988 47999999999999999999999889999999999997
Q ss_pred cCcc
Q 007742 295 PSEA 298 (591)
Q Consensus 295 ~~~~ 298 (591)
.+..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 6654
No 215
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=117.57 Aligned_cols=81 Identities=30% Similarity=0.463 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeE----E
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT----L 394 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~-~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~----l 394 (591)
.+++|||+|||..+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|..|+..|||. .|.|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK-PLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS-EESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC-ccCCCCcceeE
Confidence 358999999999999999999999999999 9999999889999999999999999999999999996 699999 9
Q ss_pred EEEEecC
Q 007742 395 KVSSVTD 401 (591)
Q Consensus 395 ~v~~~~~ 401 (591)
.|.++..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998764
No 216
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=116.39 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=72.6
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc--cCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW--FAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~--~~g 572 (591)
..|+++|+|+|| |..++ +++|.++|++||.|..|.|.. .+|+|||+|.+.++|..|+..|+|.. |.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 12 VSVSPVVHVRGL--CESVV--------EADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCCSEEEEESC--CSSCC--------HHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 467789999999 88888 899999999999999998875 58999999999999999999998764 999
Q ss_pred eEEEEEEeCchhhh
Q 007742 573 RLISAIFMKPEDYE 586 (591)
Q Consensus 573 ~~l~v~~~~~~~~~ 586 (591)
++|.|.|+..+...
T Consensus 81 r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 QQAFFNYSTSKRIT 94 (104)
T ss_dssp SBCEEEECSSSSCC
T ss_pred EEEEEEEccCcccc
Confidence 99999999876544
No 217
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-14 Score=118.72 Aligned_cols=81 Identities=32% Similarity=0.569 Sum_probs=76.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGK-SLHGKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSC-BCSSSBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEECC
Confidence 4899999999999999999999999999999999987 8999999999999999999999999996 6999999999987
Q ss_pred CCC
Q 007742 401 DHV 403 (591)
Q Consensus 401 ~~~ 403 (591)
...
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 218
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.4e-14 Score=112.67 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CeeeCCeEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG-KLEIVGRTLKV 396 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g-~~~~~g~~l~v 396 (591)
.+++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|++ ...|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999988753 79999999999999999998752 24699999999
Q ss_pred EEecCCC
Q 007742 397 SSVTDHV 403 (591)
Q Consensus 397 ~~~~~~~ 403 (591)
.+++...
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9987543
No 219
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=8.3e-15 Score=117.95 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
...+|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+. .|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEec
Confidence 3589999999999999999999999999988888888778899999999999999999999999996 799999999886
Q ss_pred c
Q 007742 400 T 400 (591)
Q Consensus 400 ~ 400 (591)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 220
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=1.6e-14 Score=122.93 Aligned_cols=83 Identities=31% Similarity=0.509 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~-~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 34589999999999999999999999999999999999888999999999999999999999999996 69999999998
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+.+.
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7653
No 221
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=116.62 Aligned_cols=84 Identities=27% Similarity=0.425 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||+.+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..||.. ++ ..|.|+.|.|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP-HTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS-EEETTEEEBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC-CeECCEEEEEE
Confidence 34468999999999999999999999999999999999988899999999999999999999977 88 57999999999
Q ss_pred EecCCC
Q 007742 398 SVTDHV 403 (591)
Q Consensus 398 ~~~~~~ 403 (591)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 886543
No 222
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=119.17 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=73.4
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcc--cccC
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM--RWFA 571 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g--~~~~ 571 (591)
...++++|+|+|| |+.++ +++|.++|+.||.|..|.|... +|+|||+|.+.++|.+|+..|++ ..|.
T Consensus 27 ~~~ps~~LfVgNL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 27 AGVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CSSCCSEEEEESC--CTTCC--------HHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred cCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 4567889999999 88888 8999999999999999998764 89999999999999999999985 5799
Q ss_pred CeEEEEEEeCchhhh
Q 007742 572 RRLISAIFMKPEDYE 586 (591)
Q Consensus 572 g~~l~v~~~~~~~~~ 586 (591)
|++|.|.|+..+...
T Consensus 96 Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 96 GQPIYIQFSNHKELK 110 (119)
T ss_dssp TBCCEEEECSSSSCC
T ss_pred CeEEEEEEccCCCCC
Confidence 999999999876643
No 223
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=116.09 Aligned_cols=79 Identities=6% Similarity=0.058 Sum_probs=70.7
Q ss_pred CCCcceEEEeccCCCC-CCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc--cC
Q 007742 495 GSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW--FA 571 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~-~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~--~~ 571 (591)
..++++|+|+|| |+ .++ +++|.++|+.||.|..|.|.. .+|+|||+|.+.++|..|+..|||.. |.
T Consensus 12 ~~p~~~l~V~nL--p~~~~t--------e~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 12 VETRRVVHIMDF--QRGKNL--------RYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCEEEEESC--CCSSSH--------HHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEEeCC--CCCcCC--------HHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 347789999999 88 777 899999999999999999875 47999999999999999999999764 99
Q ss_pred CeEEEEEEeCchh
Q 007742 572 RRLISAIFMKPED 584 (591)
Q Consensus 572 g~~l~v~~~~~~~ 584 (591)
|++|.|.|+....
T Consensus 81 Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 81 GKPVRVHLSQKYK 93 (102)
T ss_dssp TEECEEEEECCCT
T ss_pred CcEEEEEECCCCC
Confidence 9999999998644
No 224
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=115.75 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|||+.+|+++|+++|.+||.|..|.++. .+|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 34668999999999999999999999999999999984 3789999999999999999 7999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 86643
No 225
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=118.37 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
...++|||+|||+.+|+++|+.+|..||.|..|.++.+ +|||||+|.+.++|..|+ .|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34689999999999999999999999999999999865 789999999999999999 79999999999999998
Q ss_pred ccccc
Q 007742 297 EAEKN 301 (591)
Q Consensus 297 ~~~~~ 301 (591)
.....
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76543
No 226
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.7e-15 Score=129.72 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~ 296 (591)
....++|||+|||+.+|+++|+++|.+|| |+.|.|+.++. |.++|||||+|.+.++|.+||.+|+..|.|+.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 77999999986 99999999999999999999999999999999999877
Q ss_pred ccc
Q 007742 297 EAE 299 (591)
Q Consensus 297 ~~~ 299 (591)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 227
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=3e-14 Score=113.14 Aligned_cols=78 Identities=31% Similarity=0.538 Sum_probs=74.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||+|||..+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|..|+ .|+|. .|.|+.|.|.++.+
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~-~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES-LFRGRQIKVIPKRT 84 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC-EETTEECEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC-EECCcEEEEEEccC
Confidence 79999999999999999999999999999999998888999999999999999999999 99996 69999999998764
No 228
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.54 E-value=2.3e-14 Score=122.02 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEE
Confidence 34589999999999999999999999999999999999889999999999999999999999999996 69999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+....
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87543
No 229
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=115.89 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=70.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|+++|..||.|. +.++. +.++|||||+|.+.++|..|+ .|||..|.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345579999999999999999999999999997 66664 357899999999999999999 799999999999999
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
++.+.
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88654
No 230
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.7e-14 Score=117.84 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=68.9
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecC----cch----HHHHHH---HcCCc
Q 007742 221 RTVFAYQM----PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD----VMS----VPMAIA---LSGQL 285 (591)
Q Consensus 221 ~~l~V~nL----p~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~----~e~----A~~Al~---l~g~~ 285 (591)
..|||+|| |+.+++.+|+++|..||.|..|.++.|+.||.++|||||+|.+ +.+ |..|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 544 677764 69999
Q ss_pred cCCeeEEeccCc
Q 007742 286 LLGQPVMVKPSE 297 (591)
Q Consensus 286 i~g~~i~v~~~~ 297 (591)
|.|++|+|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999997553
No 231
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=114.91 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=70.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccC--CeeEEe
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLL--GQPVMV 293 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~--g~~i~v 293 (591)
..+.++|||+|||+.+|+++|.++|.+||.|..|.++.+ +|||||+|.+.++|.+|+ .||+..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998753 789999999999999999 59999999 999999
Q ss_pred ccCccc
Q 007742 294 KPSEAE 299 (591)
Q Consensus 294 ~~~~~~ 299 (591)
.++.+.
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998664
No 232
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=117.15 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=73.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
...+.++|||+|||+.+|+++|+++|..|+ .|.++.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999999999999999999999773 6788888889999999999999999999999 599999999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987644
No 233
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.9e-15 Score=123.94 Aligned_cols=81 Identities=19% Similarity=0.369 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKV----RDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i----~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
..+.++|||+|||+.+|+++|.++|..||.| ..+.++ +|.++|||||+|.+.++|..|| .|||..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4467999999999999999999999999998 455544 6889999999999999999999 599999999999
Q ss_pred EeccCccccc
Q 007742 292 MVKPSEAEKN 301 (591)
Q Consensus 292 ~v~~~~~~~~ 301 (591)
.|.++.....
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999876543
No 234
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=113.82 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~ 297 (591)
...++|||+|||+.+|+++|.++|..||.|..| +.++.+|. ||||+|.+.++|.+|+.||+..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 356899999999999999999999999999987 55666655 9999999999999999999999999999999875
Q ss_pred ccc
Q 007742 298 AEK 300 (591)
Q Consensus 298 ~~~ 300 (591)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 235
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=110.52 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
...+|||+|||+.+++++|+++|..| .|..|.|+.+ .++.++|||||+|.+.++|..|+. |||. .|.|+.|.|.++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~-~~~gr~i~v~~a 84 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE-YMGGRYIEVFRE 84 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE-EETTEEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc-eeCCcEEEEEEC
Confidence 34899999999999999999999999 9999999988 589999999999999999999998 9995 799999999998
Q ss_pred cCC
Q 007742 400 TDH 402 (591)
Q Consensus 400 ~~~ 402 (591)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 654
No 236
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=112.41 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=68.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-H-cCCccCCeeEEec
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L-SGQLLLGQPVMVK 294 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l-~g~~i~g~~i~v~ 294 (591)
....++|||+|||+.+|+++|+++|.+||.|..|.++. ++|||||+|.+.++|..|+. | ++..+.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 44568999999999999999999999999999999985 47999999999999999995 7 9999999999998
Q ss_pred cC
Q 007742 295 PS 296 (591)
Q Consensus 295 ~~ 296 (591)
++
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 237
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=2.4e-14 Score=128.89 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|.++|..||.|..|.|+.+. +|.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999998 8999999999999999999999 5999999999999998
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 76543
No 238
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=2.5e-14 Score=117.72 Aligned_cols=76 Identities=26% Similarity=0.498 Sum_probs=69.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|.++|.+||.|..|.++ +|||||+|.+.++|.+|+ .|||..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999987 689999999999999999 599999999999999
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
++...
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 98654
No 239
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=9.1e-15 Score=118.22 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 217 ERDQRTVFAYQMPLKATERDVY----EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
..++++|||+|||+.+|+++|. ++|.+||.|..|.++. +|.++|||||+|.+.++|..|+ .|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457999999999999999999 9999999999998874 4678999999999999999999 599999999999
Q ss_pred EeccCcccc
Q 007742 292 MVKPSEAEK 300 (591)
Q Consensus 292 ~v~~~~~~~ 300 (591)
.|.++....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999886643
No 240
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.4e-14 Score=108.48 Aligned_cols=76 Identities=16% Similarity=0.336 Sum_probs=66.1
Q ss_pred CCcE-EEEeCCCCCCCHHH----HHHHHhcC-CCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 219 DQRT-VFAYQMPLKATERD----VYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 219 ~~~~-l~V~nLp~~~te~~----l~~~f~~~-G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
++.+ |||+|||+.+++++ |+++|.+| |+|.+| +| |+|||.|.+.++|..|+ .|+|..+.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599998 34 99999999999999999 699999999999
Q ss_pred EeccCcccccccc
Q 007742 292 MVKPSEAEKNLVQ 304 (591)
Q Consensus 292 ~v~~~~~~~~~~~ 304 (591)
+|.++........
T Consensus 77 ~v~~A~~~sd~~~ 89 (96)
T 2diu_A 77 IVSFTPKNRELCE 89 (96)
T ss_dssp EEESSCCSCCCCC
T ss_pred EEEecCCCcceeE
Confidence 9999977655443
No 241
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=116.95 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||+.+|+++|.++|++||+|..|.|+.+.. +.++|||||+|.+.++|..|+. +++. .|.|+.|.|.+..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~-~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQ-KYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCC-CCTTTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCC-EECCEEEEEEEch
Confidence 48999999999999999999999999999999999875 8999999999999999999997 8885 7999999999875
Q ss_pred C
Q 007742 401 D 401 (591)
Q Consensus 401 ~ 401 (591)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 242
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-13 Score=112.15 Aligned_cols=83 Identities=33% Similarity=0.474 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..||. ++ ..|.|+.|.|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~-~~~~g~~l~v~~ 89 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QR-HMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SC-EEETTEEEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cC-CeeCCeEEEEEe
Confidence 345899999999999999999999999999999999998889999999999999999999996 45 369999999999
Q ss_pred ecCCCC
Q 007742 399 VTDHVG 404 (591)
Q Consensus 399 ~~~~~~ 404 (591)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 876543
No 243
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=2.6e-14 Score=116.28 Aligned_cols=84 Identities=29% Similarity=0.448 Sum_probs=70.0
Q ss_pred cceEEEeccC-CCCCCCC--------------chhhhhHHHHHHHHh-ccccceEEEEEecC----CCeeEEEEeCCHHH
Q 007742 498 SECLLLKNMF-DPAMETD--------------PDFDLEIQGDVEEEC-SKYGRVKHIYVDKR----SAGFVYLRFESTEA 557 (591)
Q Consensus 498 s~~l~v~Nl~-~p~~~~~--------------~~~~~~~~edl~~~f-~~~G~V~~v~l~~~----~~g~afV~F~~~e~ 557 (591)
++||+|.||+ +|...+. .+.+.++.++|.++| ++||.|..|.|+.+ ++|+|||+|.+.++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 4689999998 5765443 123456789999999 99999999999754 48999999999999
Q ss_pred HHHHHHHhcccccCCeEEEEEEeC
Q 007742 558 AASAQRAMHMRWFARRLISAIFMK 581 (591)
Q Consensus 558 A~~A~~~l~g~~~~g~~l~v~~~~ 581 (591)
|.+|+..|||+.|+|+.|.|.|++
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999975
No 244
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.3e-14 Score=116.14 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeccCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeE
Q 007742 320 IDRKLYVGNLHFNMTETQLR---KLFEPFGPVELVQLPLDIETG---QCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 393 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~---~~f~~~g~i~~v~i~~~~~~~---~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~ 393 (591)
...+|||+|||+.+++++|+ ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|..|+..|||. .|.|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~-~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV-VVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE-EETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC-EECCEE
Confidence 35899999999999999999 999999999999998886543 45699999999999999999999995 799999
Q ss_pred EEEEEecCCC
Q 007742 394 LKVSSVTDHV 403 (591)
Q Consensus 394 l~v~~~~~~~ 403 (591)
|.|.+++...
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999987654
No 245
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-13 Score=119.75 Aligned_cols=85 Identities=38% Similarity=0.583 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF-NILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE-ECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 334589999999999999999999999999999999999888999999999999999999999999995 7999999999
Q ss_pred EecCCC
Q 007742 398 SVTDHV 403 (591)
Q Consensus 398 ~~~~~~ 403 (591)
++....
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987643
No 246
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=5.1e-14 Score=112.54 Aligned_cols=80 Identities=29% Similarity=0.472 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||+|||..+++++|+++|..||.|..|.|..+ ++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM-KLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC-CBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 3589999999999999999999999999999999874 7889999999999999999999999996 699999999998
Q ss_pred cCC
Q 007742 400 TDH 402 (591)
Q Consensus 400 ~~~ 402 (591)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 247
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=3e-14 Score=116.08 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|||+|||..+|+++|+.+|..||.|..|.++ .++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 35899999999999999999 699999999999999875
Q ss_pred c
Q 007742 298 A 298 (591)
Q Consensus 298 ~ 298 (591)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 248
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=118.92 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHc--CCccCCeeEE
Q 007742 217 ERDQRTVFAYQMPLK-ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALS--GQLLLGQPVM 292 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~--g~~i~g~~i~ 292 (591)
..++++|||+|||+. +|+++|.++|.+||.|..|.|+. ++|||||+|.+.++|..|+ .|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345799999999998 99999999999999999999973 4799999999999999999 465 4569999999
Q ss_pred eccCcccc
Q 007742 293 VKPSEAEK 300 (591)
Q Consensus 293 v~~~~~~~ 300 (591)
|.++....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99986544
No 249
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.7e-14 Score=117.57 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
....++|+|+|| |..++ +++|.++|+.||.|..|.+. .++|+|||+|.+.++|..|+..|||..|+|+.
T Consensus 24 ~~~~~~l~V~nl--p~~~~--------~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 24 PPRVTTAYIGNI--PHFAT--------EADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp CSSCCEEEEESC--CTTCC--------HHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEcCC--CcccC--------HHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 345678999999 88887 89999999999999999987 56899999999999999999999999999999
Q ss_pred EEEEEeCc
Q 007742 575 ISAIFMKP 582 (591)
Q Consensus 575 l~v~~~~~ 582 (591)
|.|.|+.+
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999875
No 250
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.3e-14 Score=112.09 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=71.9
Q ss_pred CceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLR----KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
..+|||+|||..+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|..|+..|||. .|.|+.|.|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~-~~~gr~l~V 84 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY-KIGSKKILV 84 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE-EETTEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC-EECCeEEEE
Confidence 4799999999999999999 99999999999999987644 889999999999999999999995 799999999
Q ss_pred EEecCC
Q 007742 397 SSVTDH 402 (591)
Q Consensus 397 ~~~~~~ 402 (591)
.++.+.
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998653
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=121.91 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCC---eeeCCe
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK---LEIVGR 392 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~---~~~~g~ 392 (591)
....++|||+|||+.+++++|+++|.+||.|.. |.|+.+..++.++|||||+|.+. +|..|+..|||. +.|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999977 99999988999999999999999 999999999994 259999
Q ss_pred EEEEEEecCC
Q 007742 393 TLKVSSVTDH 402 (591)
Q Consensus 393 ~l~v~~~~~~ 402 (591)
.|.|.++.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 252
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=124.45 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
.++|||+|||+.+++++|+++|..|| .|..|.|+.+..+|.++|||||+|.+.++|..||..|||. .|.|+.|.|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~-~~~Gr~l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK-VLNGEKVDVRP 133 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC-EETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEeEEEE
Confidence 47999999999999999999999999 9999999999889999999999999999999999999996 79999999998
Q ss_pred ecC
Q 007742 399 VTD 401 (591)
Q Consensus 399 ~~~ 401 (591)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 753
No 253
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=4.6e-14 Score=113.73 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=68.5
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEe
Q 007742 216 PERDQRTVFAYQMPL-KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v 293 (591)
.....++|||+|||+ .+|+++|.++|..||.|..|.+. +|||||+|.+.++|..|+ .|||..+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345679999999998 99999999999999999999883 789999999999999999 59999999999999
Q ss_pred ccCcc
Q 007742 294 KPSEA 298 (591)
Q Consensus 294 ~~~~~ 298 (591)
.++..
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98754
No 254
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=115.44 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=71.5
Q ss_pred CCCcceEEEeccCCCCC-CCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccc--ccC
Q 007742 495 GSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR--WFA 571 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~-~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~--~~~ 571 (591)
..++++|+|+|| |+. ++ +++|.++|+.||.|..|.|.. ++|+|||+|.+.++|..|+..|++. .|.
T Consensus 22 ~~p~~~l~V~NL--p~~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNL--PHSGYS--------DSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEEESC--CCSSCC--------SHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEEeCC--CCccCC--------HHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 457889999999 886 77 789999999999999999874 6899999999999999999999764 599
Q ss_pred CeEEEEEEeCchhhh
Q 007742 572 RRLISAIFMKPEDYE 586 (591)
Q Consensus 572 g~~l~v~~~~~~~~~ 586 (591)
|++|.|.|+....-.
T Consensus 91 Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 91 GRCVKVDLSEKYKKL 105 (112)
T ss_dssp SSCCEEEEECSCSSS
T ss_pred CEEEEEEECcccccc
Confidence 999999999866544
No 255
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.3e-14 Score=115.83 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCee-eCCeEEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEP-FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLE-IVGRTLKVS 397 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~-~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~-~~g~~l~v~ 397 (591)
...+|||+|||..+++++|+++|.. ||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|++. . |.|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA-VGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC-CSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC-cccCCEeEEEE
Confidence 3489999999999999999999999 9999999999998 8999999999999999999999999996 6 999999999
Q ss_pred EecCCC
Q 007742 398 SVTDHV 403 (591)
Q Consensus 398 ~~~~~~ 403 (591)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 886543
No 256
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=8.4e-14 Score=120.95 Aligned_cols=81 Identities=40% Similarity=0.667 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|||. .|.|+.|.|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE-EETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 345689999999999999999999999999999999999888999999999999999999999999995 7999999998
Q ss_pred Ee
Q 007742 398 SV 399 (591)
Q Consensus 398 ~~ 399 (591)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 257
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.2e-14 Score=115.71 Aligned_cols=81 Identities=31% Similarity=0.574 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|++||.|..|.|..+. +.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 3345899999999999999999999999999999998874 348999999999999999999999996 6999999999
Q ss_pred EecC
Q 007742 398 SVTD 401 (591)
Q Consensus 398 ~~~~ 401 (591)
+++.
T Consensus 103 ~a~~ 106 (109)
T 2err_A 103 NATA 106 (109)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9865
No 258
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-15 Score=128.14 Aligned_cols=85 Identities=25% Similarity=0.421 Sum_probs=78.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRD--------VRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG 288 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g 288 (591)
.+.++|||+|||+.+|+++|+++|.+||.|.. |.++.++.+|.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35689999999999999999999999999998 999999889999999999999999999999 599999999
Q ss_pred eeEEeccCcccccc
Q 007742 289 QPVMVKPSEAEKNL 302 (591)
Q Consensus 289 ~~i~v~~~~~~~~~ 302 (591)
+.|.|.++......
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999998765543
No 259
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=6.6e-14 Score=117.18 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=72.6
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCee-EEEEeCCHHHHHHHHHHhcccccCC--eEEE
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF-VYLRFESTEAAASAQRAMHMRWFAR--RLIS 576 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~-afV~F~~~e~A~~A~~~l~g~~~~g--~~l~ 576 (591)
.|+|.|| +..++ +++|.++|++||.|..|.+....+|+ |||+|.+.++|..|+..|||..|.| ++|.
T Consensus 30 ~I~V~NL--~~~vt--------e~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 30 RIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEESC--CSCCC--------HHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred EEEECCC--CCCCC--------HHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3669999 77777 89999999999999999987777888 9999999999999999999999988 9999
Q ss_pred EEEeCchhhhhccC
Q 007742 577 AIFMKPEDYEAKFK 590 (591)
Q Consensus 577 v~~~~~~~~~~~~~ 590 (591)
|.|+++..++-++.
T Consensus 100 I~~ak~~~l~v~~n 113 (130)
T 3zzy_A 100 IDFSKLTSLNVKYN 113 (130)
T ss_dssp EEECSCSSCCCCCC
T ss_pred EEecCCCceeEEec
Confidence 99999987765554
No 260
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.4e-14 Score=111.79 Aligned_cols=76 Identities=17% Similarity=0.347 Sum_probs=69.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
.....++|||+|||+.+|+++|.++|.+||.|..|.++ +|||||+|.+.++|..|+ .|||..|.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999997 349999999999999999 599999999999999
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
++...
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98664
No 261
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.1e-14 Score=117.44 Aligned_cols=79 Identities=22% Similarity=0.430 Sum_probs=74.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..|| .|||. .|.|+.|.|.++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ-RLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE-EETTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC-EeCCeEEEEEecC
Confidence 479999999999999999999999999999999999888999999999999999999999 99995 7999999999875
Q ss_pred C
Q 007742 401 D 401 (591)
Q Consensus 401 ~ 401 (591)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 262
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.51 E-value=2.2e-13 Score=115.41 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
..+++|||+|||..+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 345899999999999999999999999999999999988 8999999999999999999999999995 79999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 263
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=3.2e-14 Score=121.45 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=72.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGP---VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
...+|||+|||+.+|+++|+++|+.||. |..|.|+.+.. +.++|||||+|.+.++|.+||. ||+. .|.|+.|.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~-~l~gr~i~V 119 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE-SMGHRYIEV 119 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE-ESSSSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-EECCEEEEE
Confidence 3589999999999999999999999999 88999999875 9999999999999999999997 9995 799999999
Q ss_pred EEec
Q 007742 397 SSVT 400 (591)
Q Consensus 397 ~~~~ 400 (591)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 8874
No 264
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=117.39 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=73.4
Q ss_pred CcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEE
Q 007742 497 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 576 (591)
Q Consensus 497 ~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~ 576 (591)
..++|+|.|| |..++ +++|.++|+.||.|..|.|+. ++|+|||+|.+.++|..|+..|||..|+|+.|.
T Consensus 9 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNL--PAGTL--------AAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 4578999999 88887 899999999999999998874 789999999999999999999999999999999
Q ss_pred EEEeCchhhhh
Q 007742 577 AIFMKPEDYEA 587 (591)
Q Consensus 577 v~~~~~~~~~~ 587 (591)
|.|+....|..
T Consensus 78 V~~a~~~~~~~ 88 (111)
T 1whx_A 78 LEWAPIGVFGA 88 (111)
T ss_dssp EEEEETTTTCC
T ss_pred EEECCCCccCC
Confidence 99998877754
No 265
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.7e-15 Score=115.09 Aligned_cols=78 Identities=32% Similarity=0.526 Sum_probs=72.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||. .|.|+.|++.+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~~~ 82 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS-GVQAQMAKQSGP 82 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH-TCCEESCCSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC-eEeeEEEeecCC
Confidence 489999999999999999999999999999999999888999999999999999999999999996 689988877543
No 266
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-13 Score=111.85 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=69.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEE
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVM 292 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~--G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~ 292 (591)
...+.++|||+|||+.+|+++|+++|.+| |.|..|.+. +|||||+|.+.++|.+|+. ||+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34467999999999999999999999999 999998764 6799999999999999994 999999999999
Q ss_pred eccCcccc
Q 007742 293 VKPSEAEK 300 (591)
Q Consensus 293 v~~~~~~~ 300 (591)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99987644
No 267
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=116.78 Aligned_cols=80 Identities=40% Similarity=0.709 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.++.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB-SCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeCC
Confidence 379999999999999999999999999999999998878999999999999999999999999996 6999999999986
Q ss_pred C
Q 007742 401 D 401 (591)
Q Consensus 401 ~ 401 (591)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 268
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=6e-14 Score=144.57 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=78.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
.+.++|||+|||+.+|+++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999 79999999999999988
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 269
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.1e-13 Score=112.66 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....++|||+|||..+++++|+++|..||.|..|.|..+ +.++|||||+|.+.++|..|+..||+. .|.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGY-DYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEE
Confidence 334689999999999999999999999999999999653 457899999999999999999999996 7999999999
Q ss_pred EecCC
Q 007742 398 SVTDH 402 (591)
Q Consensus 398 ~~~~~ 402 (591)
+++..
T Consensus 95 ~a~~~ 99 (109)
T 1x4a_A 95 FPRSG 99 (109)
T ss_dssp CCCCC
T ss_pred EcccC
Confidence 98654
No 270
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=9.1e-14 Score=114.64 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=73.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..+ + ..|.|+.|.|.++.
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~-~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R-HELDSKTIDPKVAF 102 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C-EEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C-CcCCCEEEEEEEcc
Confidence 489999999999999999999999999999999999888999999999999999999999765 5 57999999999986
Q ss_pred CC
Q 007742 401 DH 402 (591)
Q Consensus 401 ~~ 402 (591)
..
T Consensus 103 ~~ 104 (109)
T 2rs2_A 103 PR 104 (109)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 271
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=116.78 Aligned_cols=79 Identities=25% Similarity=0.546 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI-ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~-~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
..++|||+|||..+++++|+++|+.|| |..|.|+.+. .++.++|||||+|.+.++|..|+ .|+|. .|.|+.|.|.+
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~-~~~g~~l~V~~ 94 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNRRIRVDV 94 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC-CBTTBCCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC-EECCeEEEEEe
Confidence 358999999999999999999999999 9999999887 58899999999999999999999 99996 69999999998
Q ss_pred ecC
Q 007742 399 VTD 401 (591)
Q Consensus 399 ~~~ 401 (591)
+..
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 272
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6.5e-14 Score=113.06 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=71.7
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccC--C
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFA--R 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~--g 572 (591)
..++++|+|.|| |..++ +++|.++|+.||.|..|.+... +|+|||+|.+.++|.+|+..|||..|. |
T Consensus 14 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 14 ANPTTRLWVGGL--GPNTS--------LAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCCSCEEEECC--CSSCC--------HHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 356678999999 88887 8999999999999999998754 899999999999999999999999999 9
Q ss_pred eEEEEEEeCch
Q 007742 573 RLISAIFMKPE 583 (591)
Q Consensus 573 ~~l~v~~~~~~ 583 (591)
+.|.|.|+.++
T Consensus 83 ~~l~V~~a~~~ 93 (97)
T 1why_A 83 RRLRVDFAKSG 93 (97)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 99999999875
No 273
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.8e-14 Score=111.07 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=69.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|||+.+|+++|+++|.+||.|..|.++ ++||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4467999999999999999999999999999999987 349999999999999999 6999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 86643
No 274
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=9.3e-14 Score=111.92 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=70.1
Q ss_pred cCCCcceEEEeccCCCC-CCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCC
Q 007742 494 IGSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~-~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
..+++++|+|+|| |. .++ +++|.++|+.||.|..|.+. +|+|||+|.+.++|.+|+..|||..|+|
T Consensus 18 ~~~~~~~l~V~nL--p~~~~t--------~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp -CCTTCEEEEESC--CSSCCC--------HHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3567789999999 87 777 89999999999999999884 8999999999999999999999999999
Q ss_pred eEEEEEEeCch
Q 007742 573 RLISAIFMKPE 583 (591)
Q Consensus 573 ~~l~v~~~~~~ 583 (591)
+.|.|.|+...
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998753
No 275
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1e-13 Score=113.34 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
....+|||+|||+.+++++|+++|..||.|.. |.|+.+ .++.++|||||+|.+.++|..||.. ++. .|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~-~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE-RIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC-CSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc-hhCCcEEEEE
Confidence 34589999999999999999999999999987 888888 5899999999999999999999976 886 6999999998
Q ss_pred EecCC
Q 007742 398 SVTDH 402 (591)
Q Consensus 398 ~~~~~ 402 (591)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87643
No 276
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=4.9e-14 Score=115.92 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=71.6
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCe
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 573 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~ 573 (591)
...++++|+|+|| |..++ +++|.++|+.||.|..|.+. +|+|||+|.+.++|.+|+..|||..|+|+
T Consensus 27 ~~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 27 GELSNTRLFVRPF--PLDVQ--------ESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp -CCSCSEEEECSS--CTTCC--------HHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4567789999999 88888 89999999999999999988 89999999999999999999999999999
Q ss_pred EEEEEEeCchh
Q 007742 574 LISAIFMKPED 584 (591)
Q Consensus 574 ~l~v~~~~~~~ 584 (591)
.|.|.|+.+..
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 277
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=2.1e-14 Score=109.95 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=70.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 323 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+. |+|. .|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~-~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH-EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC-CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC-EECCEEEEEEeC
Confidence 48999999999999999999999999999999988889999999999999999999996 9996 699999999764
No 278
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.2e-14 Score=116.40 Aligned_cols=79 Identities=24% Similarity=0.300 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...+|||+|||+.+++++|+++|..||.| ..|.|+.+. ++.++|||||+|.+.++|.+||.. |+. .|.|+.|.|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~-~~~gr~i~v~~ 90 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRK-KLNGREAFVHV 90 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSE-EETTEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCC-ccCCeEEEEEE
Confidence 35899999999999999999999999999 889999988 899999999999999999999965 884 79999999999
Q ss_pred ecC
Q 007742 399 VTD 401 (591)
Q Consensus 399 ~~~ 401 (591)
+..
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 853
No 279
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=3e-13 Score=110.49 Aligned_cols=76 Identities=29% Similarity=0.451 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|..|+..|++. .|.|+.|.|.++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFA 80 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCC-ccCCCEEEEEEc
Confidence 35899999999999999999999999999999886 459999999999999999999995 799999999998
Q ss_pred cCCCC
Q 007742 400 TDHVG 404 (591)
Q Consensus 400 ~~~~~ 404 (591)
.+...
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76543
No 280
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=1.2e-13 Score=122.26 Aligned_cols=82 Identities=29% Similarity=0.435 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
..++|||.|||..+++++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT-RLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS-EETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEC
Confidence 3589999999999999999999999999999999999888999999999999999999999999996 699999999999
Q ss_pred cCC
Q 007742 400 TDH 402 (591)
Q Consensus 400 ~~~ 402 (591)
...
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 281
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.4e-13 Score=112.00 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC-----eE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-----RT 393 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g-----~~ 393 (591)
....+|||+|||+.+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+||..|||. .|.| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSE-EEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcC-CccCCcCcceE
Confidence 34589999999999999999999999999999999865 89999999999999999999995 7999 99
Q ss_pred EEEEEecCCC
Q 007742 394 LKVSSVTDHV 403 (591)
Q Consensus 394 l~v~~~~~~~ 403 (591)
|.|.++.+..
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987643
No 282
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-14 Score=116.81 Aligned_cols=79 Identities=27% Similarity=0.390 Sum_probs=70.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHH-HcCCccCCeeEEec
Q 007742 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLLLGQPVMVK 294 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~-l~g~~i~g~~i~v~ 294 (591)
...+.++|||+|||+.+|+++|.++|..||.|..+ ..+|.++|||||+|.+.++|..|+. |||..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467999999999999999999999999988766 3467899999999999999999995 99999999999999
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
++.+.
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 88653
No 283
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.8e-14 Score=113.03 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
....+|||+|||+.+++++|+++|.+||.+ .|.|+.+. ++.++|||||+|.+.++|.+|| .+|+. .|.|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKA-NMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCC-eECCcEEEEEE
Confidence 345899999999999999999999999955 99999987 8999999999999999999999 57886 69999999988
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7643
No 284
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.6e-14 Score=114.28 Aligned_cols=76 Identities=22% Similarity=0.452 Sum_probs=68.4
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEec
Q 007742 217 ERDQRTVFAYQMPL-KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVK 294 (591)
Q Consensus 217 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~ 294 (591)
..+.++|||+|||+ .+|+++|.++|.+||.|..|.+. +|||||+|.+.++|..|+ .|||..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34579999999998 99999999999999999999884 789999999999999999 599999999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++....
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 886543
No 285
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.9e-14 Score=116.63 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccCc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 297 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~~ 297 (591)
..++|||+|||+.+|+++|+++|.+||.|..|.|+. ++|||||+|.+.++|..|+ .|||..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 358999999999999999999999999999998863 5789999999999999999 699999999999999875
Q ss_pred c
Q 007742 298 A 298 (591)
Q Consensus 298 ~ 298 (591)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 286
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=114.22 Aligned_cols=79 Identities=28% Similarity=0.421 Sum_probs=72.3
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCe-E
Q 007742 321 DRKLYVGNLHFNM------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR-T 393 (591)
Q Consensus 321 ~~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~-~ 393 (591)
.++|||+|||+.+ ++++|.++|++||.|..|.|+. .+|.++|||||+|.+.++|..|+..|||. .|.|+ .
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~~~g~~~ 91 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQHT 91 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSE-ECSTTCE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCc-ccCCCce
Confidence 4899999999999 7899999999999999999883 47889999999999999999999999995 79998 9
Q ss_pred EEEEEecCC
Q 007742 394 LKVSSVTDH 402 (591)
Q Consensus 394 l~v~~~~~~ 402 (591)
|.|.++.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988654
No 287
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=9.4e-14 Score=114.97 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=69.4
Q ss_pred CCCCCcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEe
Q 007742 216 PERDQRTVFAYQMPLK-ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293 (591)
Q Consensus 216 ~~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v 293 (591)
+....++|||+|||+. +|+++|+++|.+||.|..|.+ ++|||||+|.+.++|..|+ .||+..|.|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 4799999999999999999 79999999999999
Q ss_pred ccCccc
Q 007742 294 KPSEAE 299 (591)
Q Consensus 294 ~~~~~~ 299 (591)
.++...
T Consensus 95 ~~a~~~ 100 (110)
T 1wf1_A 95 NMAGEP 100 (110)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998643
No 288
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-13 Score=109.92 Aligned_cols=79 Identities=30% Similarity=0.578 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|.+||.| .++.+ .++.++|||||+|.+.++|..|+..||+. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 87 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKR-EIEGRAIRLEL 87 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCC-EeCCeEEEEEE
Confidence 346899999999999999999999999977 45555 47889999999999999999999999995 79999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8764
No 289
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=116.78 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCccceEEEEecCcchHHHHH-HHcCCccCCeeEEe
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS---RRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 293 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v 293 (591)
...++|||+|||+.+|+++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|.+|| .|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4569999999999999999999999999999 888888877 799999999999999999999 463 256666665
Q ss_pred cc
Q 007742 294 KP 295 (591)
Q Consensus 294 ~~ 295 (591)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 290
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=7.3e-14 Score=114.66 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhcccc-ceEEEEEe-cCCCeeEEEEeCCHHHHHHHHHHhcccccCCe
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRWFARR 573 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G-~V~~v~l~-~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~ 573 (591)
.....|+|+|| |..++ +++|+++|+.|| .|..+.+. ..++|+|||+|.+.++|.+|+..|||..|+|+
T Consensus 26 ~~~~~l~VgnL--p~~~t--------e~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 26 AKRYRITMKNL--PEGCS--------WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CCCEEEEEECS--SCCCC--------HHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEECC--CCCCC--------HHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 44568999999 88888 899999999999 89999884 56899999999999999999999999999999
Q ss_pred EEEEEEeCch
Q 007742 574 LISAIFMKPE 583 (591)
Q Consensus 574 ~l~v~~~~~~ 583 (591)
.|.|.++...
T Consensus 96 ~i~V~~a~~~ 105 (111)
T 2jvr_A 96 VITVERDDNP 105 (111)
T ss_dssp EEEEEESCC-
T ss_pred EEEEEECCCC
Confidence 9999998654
No 291
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=114.26 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=75.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-ccCCCCCcccEEEEEeCCHHHHHHHHHHhc-CCeeeCCeEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLP-LDIETGQCKGFGFVQFAQLEHAKAAQSALN-GKLEIVGRTLKV 396 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~-~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~-g~~~~~g~~l~v 396 (591)
..++|||+|||..+++++|+++|..||. |..|.|+ .+..++.++|||||+|.+.++|..|+..|+ |.+.|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3589999999999999999999999998 9999998 777778899999999999999999999996 324799999999
Q ss_pred EEecCCC
Q 007742 397 SSVTDHV 403 (591)
Q Consensus 397 ~~~~~~~ 403 (591)
.++.+..
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9987654
No 292
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=1.3e-13 Score=115.51 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGP---VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
...+|||+|||+.+++++|+++|..||. |..|.|+.+.. +.++|||||+|.+.++|.+||. |++. .|.|+.|.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~V 92 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRE-SMGHRYIEV 92 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTE-EETTEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-eECCeEEEE
Confidence 3589999999999999999999999998 89999998874 8999999999999999999997 9995 799999999
Q ss_pred EEec
Q 007742 397 SSVT 400 (591)
Q Consensus 397 ~~~~ 400 (591)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9874
No 293
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.4e-14 Score=124.10 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=71.0
Q ss_pred cceEEEEecCcchHHHHHHHcCCccCCeeEEeccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHH
Q 007742 262 KGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKL 341 (591)
Q Consensus 262 ~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 341 (591)
+|+||.+|..++.+..++.-......|...--... ............+|||+|||+.+++++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g--------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~ 66 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG--------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNF 66 (139)
T ss_dssp ----------------------------------------------------------CCCCEECCSCCTTCCHHHHHHH
T ss_pred CCcccccccCccccchhcccchhccCCCCCCCCCC--------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 36889999888887766621111122221100000 0001111223479999999999999999999
Q ss_pred hccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 342 FEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 342 f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
|++|| |..|.|+.+. .+.++|||||+|.+.++|.+|| .+|+. .|.|+.|.|..+..
T Consensus 67 F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~-~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 67 FSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRA-NMQHRYIELFLNST 122 (139)
T ss_dssp HCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSC-SSSSCCCCCEECCC
T ss_pred HHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCC-EECCEEEEEEECCC
Confidence 99999 6699999987 4899999999999999999999 88986 69999999988754
No 294
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=109.50 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
..+.++|+|.|| |..++ +++|.++|+.||.|..|.+. +|+|||+|.+.++|.+|+..|||..|.|+.
T Consensus 5 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 5 SSGMVKLFIGNL--PREAT--------EQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SSCCEEEEEESC--CSSCC--------HHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCeEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 456788999999 88888 89999999999999999988 789999999999999999999999999999
Q ss_pred EEEEEeCchhh
Q 007742 575 ISAIFMKPEDY 585 (591)
Q Consensus 575 l~v~~~~~~~~ 585 (591)
|.|.|+.+..-
T Consensus 72 l~v~~a~~~~~ 82 (90)
T 2dnq_A 72 INVEASKNKSK 82 (90)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 295
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=115.01 Aligned_cols=81 Identities=31% Similarity=0.522 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|..||.. ++ ..|.|+.|.|.++.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~-~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP-HSIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS-EEETTEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC-cEECCEEEEEEECC
Confidence 48999999999999999999999999999999999988899999999999999999999976 88 47999999999987
Q ss_pred CCC
Q 007742 401 DHV 403 (591)
Q Consensus 401 ~~~ 403 (591)
...
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 653
No 296
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.7e-14 Score=112.47 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcC-CccCCeeEEec
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGK-VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSG-QLLLGQPVMVK 294 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g-~~i~g~~i~v~ 294 (591)
...++|||+|||+.+|+++|+++|.+||. |..+.+. ++|||||+|.+.++|.+|+ .||| ..|.|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 5555553 4799999999999999999 5999 99999999999
Q ss_pred cCcccc
Q 007742 295 PSEAEK 300 (591)
Q Consensus 295 ~~~~~~ 300 (591)
++.+..
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 987643
No 297
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=112.27 Aligned_cols=76 Identities=28% Similarity=0.381 Sum_probs=70.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
..+|||+|||+.+++++|+++|+.| .|..|.|+.+. .|.++|||||+|.+.++|.+|| .||+. .|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRM-LMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTE-EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 4799999999999999999999999 89999999887 5889999999999999999999 79996 7999999998764
No 298
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-13 Score=106.73 Aligned_cols=75 Identities=32% Similarity=0.412 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-cCCeeeCCeEEEE
Q 007742 318 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL-NGKLEIVGRTLKV 396 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l-~g~~~~~g~~l~v 396 (591)
....++|||+|||..+++++|+++|.+||.|..|.++.+ +|||||+|.+.++|..|+..| +|. .+.|+.|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~-~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL-IVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC-EETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe-eECCCEEEE
Confidence 344589999999999999999999999999999999863 789999999999999999988 885 799999999
Q ss_pred EEe
Q 007742 397 SSV 399 (591)
Q Consensus 397 ~~~ 399 (591)
.++
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 886
No 299
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=116.52 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=71.1
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEec--CCCeeEEEEeCCHHHHHHHHHHhcccccCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK--RSAGFVYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~--~~~g~afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
..++++|||+|| |..++. .+|.+.|.++|++||.|..|.+.. .++|+|||+|.+.++|..|+..|||..|.|
T Consensus 26 ~~p~~~LfV~nL--~~~~~e----~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNI--NPEVPK----EKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSCCSEEEEESC--CTTSCH----HHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCEEEEeCC--CCCCCH----HHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 356778999999 777762 112344668999999999998853 568999999999999999999999999999
Q ss_pred eEEEEEEeCchhh
Q 007742 573 RLISAIFMKPEDY 585 (591)
Q Consensus 573 ~~l~v~~~~~~~~ 585 (591)
++|.|.|+.....
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999987654
No 300
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.6e-14 Score=109.22 Aligned_cols=76 Identities=26% Similarity=0.457 Sum_probs=71.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..++ . .+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~-~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C-CCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C-ccCCEEEEEEec
Confidence 379999999999999999999999999999999988789999999999999999999998888 4 699999999875
No 301
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=7.6e-14 Score=110.35 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEeccC
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 296 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~~ 296 (591)
...++|||+|||+.+|+++|+++|.+| .|..|.+. .++|||||+|.+.++|..|+ .|||..+.|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 346899999999999999999999999 99999884 57899999999999999999 59999999999999987
Q ss_pred ccc
Q 007742 297 EAE 299 (591)
Q Consensus 297 ~~~ 299 (591)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 302
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.47 E-value=2e-13 Score=114.05 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=73.1
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEec--CCCeeEEEEeCCHHHHHHHHHHhcccccCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK--RSAGFVYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~--~~~g~afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
..++++|+|.|| |..++ +++|.++|+.||.|..|.+.. .++|+|||+|.+.++|..|+..|||..|+|
T Consensus 5 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 5 PEVNRILYIRNL--PYKIT--------AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TTCCSEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456789999999 88888 899999999999999998853 457999999999999999999999999999
Q ss_pred eEEEEEEeCchhh
Q 007742 573 RLISAIFMKPEDY 585 (591)
Q Consensus 573 ~~l~v~~~~~~~~ 585 (591)
+.|.|.|+.+..-
T Consensus 75 ~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 75 RYLVVLYYNANRA 87 (115)
T ss_dssp CBCEEEECCHHHH
T ss_pred eEEEEEEecCChh
Confidence 9999999987554
No 303
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.47 E-value=1.5e-13 Score=116.47 Aligned_cols=80 Identities=29% Similarity=0.528 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+ .|+|. .|.|+.|.|.++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET-VFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC-EETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 379999999999999999999999999999999998878999999999999999999999 89996 6999999999986
Q ss_pred CC
Q 007742 401 DH 402 (591)
Q Consensus 401 ~~ 402 (591)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 304
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.8e-13 Score=112.14 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=74.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee--------CC
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI--------VG 391 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~--------~g 391 (591)
..++|||+|||..+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|||. .| .+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~~~~~~~~~ 101 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK-FIKTPPGVSAPT 101 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC-CCCCCTTSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EEcCCccccCCC
Confidence 35899999999999999999999999999999999998 8999999999999999999999999996 57 57
Q ss_pred eEEEEEEecC
Q 007742 392 RTLKVSSVTD 401 (591)
Q Consensus 392 ~~l~v~~~~~ 401 (591)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899998864
No 305
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=113.58 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
..+.++|+|.|| |..++ +++|.++|+.||.|..|.|... +|+|||+|.+.++|.+|+..|+|..|+|+.
T Consensus 22 ~~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGI--ASGLT--------DQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECC--SSCCC--------HHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 456778999999 88887 8999999999999999999865 899999999999999999999999999999
Q ss_pred EEEEEeCchhh
Q 007742 575 ISAIFMKPEDY 585 (591)
Q Consensus 575 l~v~~~~~~~~ 585 (591)
|.|.|+.+..-
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 99999987653
No 306
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.5e-13 Score=109.17 Aligned_cols=78 Identities=33% Similarity=0.569 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
+..++|||+|||..+++++|+++|..||.|..|.+..+ +|||||+|.+.++|..|+..|+|. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM-PLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC-CBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC-EeCCceEEEEE
Confidence 34589999999999999999999999999999999753 689999999999999999999996 69999999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 87643
No 307
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=110.69 Aligned_cols=72 Identities=26% Similarity=0.413 Sum_probs=66.0
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCe-EE
Q 007742 322 RKLYVGNLHFNM------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR-TL 394 (591)
Q Consensus 322 ~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~-~l 394 (591)
++|||+|||..+ ++++|.++|++||.|..|.|+. .++.++|||||+|.+.++|..|+..|||. .|.|+ +|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSC-CCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCc-ccCCceeE
Confidence 689999999999 7799999999999999999873 47889999999999999999999999996 69998 87
Q ss_pred EE
Q 007742 395 KV 396 (591)
Q Consensus 395 ~v 396 (591)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 308
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=9.8e-14 Score=109.59 Aligned_cols=72 Identities=26% Similarity=0.517 Sum_probs=66.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCcc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKA----G-------KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLL 286 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i 286 (591)
.+.++|||+|||+.+|+++|+++|.+| | .|..+.+..+ +|||||+|.+.++|.+|+.|||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999 8 8999988743 7999999999999999999999999
Q ss_pred CCeeEEecc
Q 007742 287 LGQPVMVKP 295 (591)
Q Consensus 287 ~g~~i~v~~ 295 (591)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999864
No 309
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=4.7e-13 Score=109.15 Aligned_cols=80 Identities=34% Similarity=0.479 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
...++|||+|||..+++++|+++|..|+ .|.++.+..++.++|||||+|.+.++|..||..||+. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG-EIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEE
Confidence 4458999999999999999999999874 5667777778899999999999999999999999996 79999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
++..
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8754
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.8e-13 Score=113.01 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=70.8
Q ss_pred CCcce--EEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCee-EEEEeCCHHHHHHHHHHhcccccCC
Q 007742 496 SPSEC--LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF-VYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 496 ~~s~~--l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~-afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
+++.+ |+|.|| ++.++ +++|.++|+.||.|..|.|... .|+ |||+|.+.++|..|+..|||..|.|
T Consensus 21 ~ps~vl~l~V~NL--~~~vt--------~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 21 GGNKVLLLSIQNP--LYPIT--------VDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp CCCSEEEEEEESC--CSCCC--------HHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred CCCcEEEEEEcCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 34445 568999 77777 8999999999999999988654 586 9999999999999999999999987
Q ss_pred --eEEEEEEeCchhhhhcc
Q 007742 573 --RLISAIFMKPEDYEAKF 589 (591)
Q Consensus 573 --~~l~v~~~~~~~~~~~~ 589 (591)
+.|.|.|+.+.....++
T Consensus 90 ~~~~l~V~~Ak~~~l~v~~ 108 (124)
T 2e5i_A 90 GCCTLKIEYARPTRLNVIR 108 (124)
T ss_dssp TBSEEEEECCSCSCCCCSS
T ss_pred CCeEEEEEEecCCcceeec
Confidence 69999999988755443
No 311
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=125.12 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE--------EEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccC
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDV--------RLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLL 287 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v--------~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~ 287 (591)
..+.++|||+|||+.+|+++|..+|..||.|..+ .+. .+|.++|||||+|.+.++|..|+ .|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567999999999999999999999999998764 333 36889999999999999999999 59999999
Q ss_pred CeeEEeccCccc
Q 007742 288 GQPVMVKPSEAE 299 (591)
Q Consensus 288 g~~i~v~~~~~~ 299 (591)
|+.|.|.++...
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999988653
No 312
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=1.3e-13 Score=111.29 Aligned_cols=80 Identities=18% Similarity=0.400 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEE
Q 007742 319 AIDRKLYVGNLHFNMTETQLR----KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 394 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l 394 (591)
+++++|||+|||..+++++|+ ++|.+||.|..|.+.. ++.++|||||+|.+.++|..|+..|||. .|.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC-EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC-EECCcEE
Confidence 345899999999999999999 9999999999998873 5667899999999999999999999996 6999999
Q ss_pred EEEEecCC
Q 007742 395 KVSSVTDH 402 (591)
Q Consensus 395 ~v~~~~~~ 402 (591)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998654
No 313
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=111.26 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDV-RLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v-~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
...++|||+|||+.+|+++|+.+|..||.|..| .++.++.+ |.|||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999 48877654 44999999999999999 5999999999999998
Q ss_pred Cccc
Q 007742 296 SEAE 299 (591)
Q Consensus 296 ~~~~ 299 (591)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8664
No 314
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=109.78 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=69.8
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
...+++|+|.|| |..++ +++|.++|+.||.|....+...++|+|||+|.+.++|.+|+..|||..|+|+.
T Consensus 16 ~~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 16 APLAADVYVGNL--PRDAR--------VSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp SCCCCEEEEECC--CTTCC--------HHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCC--CCcCc--------HHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345678999999 88888 89999999999999733345567999999999999999999999999999999
Q ss_pred EEEEEeCch
Q 007742 575 ISAIFMKPE 583 (591)
Q Consensus 575 l~v~~~~~~ 583 (591)
|.|.|+.+.
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999998775
No 315
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=1.7e-13 Score=108.34 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=62.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCc--cCCeeEEec
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQL--LLGQPVMVK 294 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~--i~g~~i~v~ 294 (591)
..+..+|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEE
Confidence 445699999999999999999999999999999999864 78999999999999873 45555 469999998
Q ss_pred cCccc
Q 007742 295 PSEAE 299 (591)
Q Consensus 295 ~~~~~ 299 (591)
++.+.
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 87654
No 316
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.45 E-value=2.2e-14 Score=114.19 Aligned_cols=79 Identities=38% Similarity=0.654 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||+|||..+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.+ |..|+..|||. .+.|+.|.|.++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~-~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT-DFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS-CCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC-EECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999996 69999999999865
Q ss_pred C
Q 007742 402 H 402 (591)
Q Consensus 402 ~ 402 (591)
.
T Consensus 80 ~ 80 (90)
T 2ki2_A 80 K 80 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 317
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.8e-13 Score=108.49 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=68.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
..+.++|||+|| .+|+++|+++|.+||.|..|.+. .++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446799999996 89999999999999999999884 46899999999999999999 7999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 86644
No 318
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.7e-13 Score=107.41 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=70.8
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
..++++|+|.|| |..++ +++|.++|+.||.|..|.+. +++|||+|.+.++|.+|+..|||..|.|+.
T Consensus 7 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNI--SPTCT--------NQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESC--CSSCC--------HHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 456789999999 88887 89999999999999999987 559999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 007742 575 ISAIFMKPED 584 (591)
Q Consensus 575 l~v~~~~~~~ 584 (591)
|.|.|+.+..
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999998754
No 319
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=105.93 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=65.6
Q ss_pred CCcce-EEEeccCCCCCCCCchhhhhHHHHHHHHhccc-cceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCe
Q 007742 496 SPSEC-LLLKNMFDPAMETDPDFDLEIQGDVEEECSKY-GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 573 (591)
Q Consensus 496 ~~s~~-l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~-G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~ 573 (591)
+|+.+ |+|.|| |+.++. .+|...|.++|+.| |.|..| ..|+|||.|.+.++|..|++.|+|..|.|+
T Consensus 6 ~p~~T~lYV~NL--~~~~~~----~~lk~~L~~lF~~yGG~Vl~V-----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNL--PANKDG----KSVSNRLRRLSDNCGGKVLSI-----TGCSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESC--CTTSCH----HHHHHHHHHHHHTTTCCEEEC-----CTTCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCC--CCcCCH----HHHHHHHHHHHHHcCCeeEEE-----ecCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34555 889999 888762 22345688999999 599999 239999999999999999999999999999
Q ss_pred EEEEEEeCchh
Q 007742 574 LISAIFMKPED 584 (591)
Q Consensus 574 ~l~v~~~~~~~ 584 (591)
+|.|.|++...
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 99999998753
No 320
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=112.08 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=71.2
Q ss_pred CCCcceEEE--eccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccccc--
Q 007742 495 GSPSECLLL--KNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF-- 570 (591)
Q Consensus 495 ~~~s~~l~v--~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~-- 570 (591)
..|+.+|+| .|| ++.++ +++|.++|++||.|..|.|+. .+|||||+|.+.++|.+|+..|||..|
T Consensus 22 ~~pt~~L~V~Ng~L--~~~~t--------e~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 22 SYATQSLVVANGGL--GNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SSCCSEEEEETCTG--GGTCC--------HHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCCEEEEECCCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 456788999 559 77777 899999999999999998874 589999999999999999999999988
Q ss_pred ---CCeEEEEEEeCchhhh
Q 007742 571 ---ARRLISAIFMKPEDYE 586 (591)
Q Consensus 571 ---~g~~l~v~~~~~~~~~ 586 (591)
.|++|.|.|+..-.+.
T Consensus 91 ~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp TTSCEEECEEEEESCCCCS
T ss_pred ccCCCcEEEEEecccCccc
Confidence 7999999998765443
No 321
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.45 E-value=1.2e-13 Score=115.09 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=63.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCee-----E
Q 007742 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQP-----V 291 (591)
Q Consensus 218 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~-----i 291 (591)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+|| .||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999865 89999999999999999 59999999998 5
Q ss_pred EeccCc
Q 007742 292 MVKPSE 297 (591)
Q Consensus 292 ~v~~~~ 297 (591)
+|....
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 555443
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=3.5e-13 Score=111.50 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=69.6
Q ss_pred CCcceEEEeccCCCCC-CCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 496 SPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~-~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
.++++|+|.|| |.. ++ +++|.++|+.||.|..|.+ ++|+|||+|.+.++|..|+..|+|..|+|+.
T Consensus 25 ~~~~~l~V~nl--~~~~~t--------~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNL--NTALVK--------KSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSC--CCSSCC--------HHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCC--CcccCC--------HHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 45578999999 887 77 8999999999999999998 5899999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 007742 575 ISAIFMKPED 584 (591)
Q Consensus 575 l~v~~~~~~~ 584 (591)
|.|.|+.+..
T Consensus 92 l~V~~a~~~~ 101 (110)
T 1wf1_A 92 LDINMAGEPK 101 (110)
T ss_dssp CCEEESCCCC
T ss_pred EEEEECCCCC
Confidence 9999997543
No 323
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.6e-13 Score=110.52 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCCcceEEEeccCCCC-CCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCe
Q 007742 495 GSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 573 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~-~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~ 573 (591)
..++++|+|.|| |. .++ +++|.++|+.||.|..|.+. +|+|||+|.+.++|..|+..|||..|.|+
T Consensus 7 ~~~~~~l~V~nl--p~~~~t--------~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp --CCEEEEEESS--TTSCCC--------HHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 457789999999 87 777 89999999999999999986 79999999999999999999999999999
Q ss_pred EEEEEEeCch
Q 007742 574 LISAIFMKPE 583 (591)
Q Consensus 574 ~l~v~~~~~~ 583 (591)
.|.|.|+...
T Consensus 74 ~l~V~~a~~~ 83 (96)
T 2kvi_A 74 KLILEVSSSN 83 (96)
T ss_dssp TBCEEEEECC
T ss_pred EEEEEEcCcC
Confidence 9999998654
No 324
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=3.2e-13 Score=117.44 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=70.0
Q ss_pred ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEe-cCCCeeEEEEeCCHHHHHHHHHHhcccccCC--eEE
Q 007742 499 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRWFAR--RLI 575 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~-~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g--~~l 575 (591)
..|+|.|| ++.++ +++|.++|++||.|..|.|. +.+.|+|||+|.+.++|..|+..|||..|.| +.|
T Consensus 47 l~l~VgNL--~~~vt--------ed~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 47 LRIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp EEEEECSC--CSCCC--------HHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred EEEEEeCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 34789999 77777 89999999999999999885 3457899999999999999999999999965 999
Q ss_pred EEEEeCchhhhhc
Q 007742 576 SAIFMKPEDYEAK 588 (591)
Q Consensus 576 ~v~~~~~~~~~~~ 588 (591)
.|.|+.+.....+
T Consensus 117 ~V~~Ak~~~l~vk 129 (164)
T 1sjr_A 117 RIDFSKLTSLNVK 129 (164)
T ss_dssp EEEECSSSSCCCC
T ss_pred EEEEecCCccccc
Confidence 9999998865443
No 325
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=117.27 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
...+|||+|||+.+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|.+||. ||+. .|.|+.|.|.++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~V~~a 101 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ-YMGNRFIQVHPI 101 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB-CSTTSCBEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEEEC
Confidence 34899999999999999999999999999885555555689999999999999999999998 9996 699999999987
Q ss_pred cC
Q 007742 400 TD 401 (591)
Q Consensus 400 ~~ 401 (591)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 326
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=106.93 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
..+.++|+|.|| |..++ +++|.++|+.||.|..|.+. +++|||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 6 SGNTWKIFVGNV--SAACT--------SQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp SCCSCCEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 456778999999 88888 89999999999999999988 559999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 007742 575 ISAIFMKPED 584 (591)
Q Consensus 575 l~v~~~~~~~ 584 (591)
|.|.|+.+..
T Consensus 73 l~v~~a~~~~ 82 (90)
T 2dnp_A 73 INVELSTKGQ 82 (90)
T ss_dssp CEEEESCCCC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 327
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=111.41 Aligned_cols=75 Identities=17% Similarity=0.374 Sum_probs=70.3
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEE
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIF 579 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~ 579 (591)
+|+|.|| |..++ +++|.++|+.||.|..|.+..+++|+|||+|.+.++|.+|+..|+|..|+|+.|.|.|
T Consensus 2 ~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 2 KVYVGNL--GTGAG--------KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp EEEEECC--CSSCS--------HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred EEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 6999999 88887 8999999999999999999876899999999999999999999999999999999999
Q ss_pred eCchh
Q 007742 580 MKPED 584 (591)
Q Consensus 580 ~~~~~ 584 (591)
+.+..
T Consensus 72 a~~~~ 76 (101)
T 2hvz_A 72 STGMP 76 (101)
T ss_dssp SSSCC
T ss_pred ccCCC
Confidence 97754
No 328
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.4e-13 Score=112.62 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=71.6
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccce----EEEEE-ecCCCeeEEEEeCCHHHHHHHHHHhccc
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRV----KHIYV-DKRSAGFVYLRFESTEAAASAQRAMHMR 568 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V----~~v~l-~~~~~g~afV~F~~~e~A~~A~~~l~g~ 568 (591)
...++++|+|.|| |..++ +++|.++|..||.| ..+.+ ...++|+|||+|.+.++|..|+..|||.
T Consensus 21 ~~~~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 21 PGEPNKVLYLKNL--SPRVT--------ERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp CCSCCSEEEEECC--CTTCC--------HHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCCCCCEEEEeCC--CCCCC--------HHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3457789999999 88888 89999999999998 45544 3456899999999999999999999999
Q ss_pred ccCCeEEEEEEeCchhh
Q 007742 569 WFARRLISAIFMKPEDY 585 (591)
Q Consensus 569 ~~~g~~l~v~~~~~~~~ 585 (591)
.|+|+.|.|.|+.+..-
T Consensus 91 ~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 91 KLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp BCSSCBCEEEECCCCSC
T ss_pred EeCCcEEEEEEccCCCC
Confidence 99999999999987653
No 329
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.5e-13 Score=107.58 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=70.6
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccc--cceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY--GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~--G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
..++++|+|.|| |..++ +++|.++|+.| |.|..|.+. +|+|||+|.+.++|.+|+..|||..|.|
T Consensus 12 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 12 MSSVKILYVRNL--MLSTS--------EEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp SSCCCEEEEESC--CTTCC--------HHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred cCCcCEEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 456789999999 88887 89999999999 999999876 7899999999999999999999999999
Q ss_pred eEEEEEEeCchh
Q 007742 573 RLISAIFMKPED 584 (591)
Q Consensus 573 ~~l~v~~~~~~~ 584 (591)
+.|.|.|+.+..
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpd_A 79 SPIEVTLAKPVD 90 (99)
T ss_dssp EEEEEECCCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998764
No 330
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=8e-14 Score=106.64 Aligned_cols=75 Identities=28% Similarity=0.495 Sum_probs=69.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEe
Q 007742 323 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 399 (591)
Q Consensus 323 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~ 399 (591)
+|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|..|+. +++. .+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~-~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYH-NVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSC-CBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCC-eECCEEEEEEEC
Confidence 58999999999999999999999999999999988889999999999999999999996 5774 699999998763
No 331
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=6e-13 Score=110.98 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=65.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccce-EEEEecCcchHHHHH-HHcCCccCC--eeEEeccC
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV-GYIEFYDVMSVPMAI-ALSGQLLLG--QPVMVKPS 296 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~-afV~F~~~e~A~~Al-~l~g~~i~g--~~i~v~~~ 296 (591)
-.|||+|||+.+|+++|.++|.+||.|..|.|+.. .|| |||+|.+.++|..|+ .|||..|.| .+|.|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 44679999999999999999999999999998752 286 999999999999999 699999987 68999988
Q ss_pred cccc
Q 007742 297 EAEK 300 (591)
Q Consensus 297 ~~~~ 300 (591)
.+..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 6543
No 332
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.42 E-value=1.9e-13 Score=128.46 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
.++|||+|||+.+++++|+++|..|| .|..|.|+.+..++.++|||||+|.+.++|.+||..||+. .|.|+.|.|.+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~-~~~Gr~l~V~~ 146 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVTP 146 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS-CBTTBCCEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-eECCEEeEEEE
Confidence 47899999999999999999999999 9999999999889999999999999999999999999996 69999999998
Q ss_pred ecC
Q 007742 399 VTD 401 (591)
Q Consensus 399 ~~~ 401 (591)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=3.7e-13 Score=117.05 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCC--eeEEecc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLG--QPVMVKP 295 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g--~~i~v~~ 295 (591)
...+|||+|||+.+|+++|+++|.+||.|..|.|+.+ ..+|||||+|.+.++|..|+ .|||..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3467899999999999999999999999999998754 25799999999999999999 699999965 9999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 87653
No 334
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.6e-13 Score=110.03 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=70.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCC----HHH----HHHHHH--HhcCCe
Q 007742 322 RKLYVGNL----HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ----LEH----AKAAQS--ALNGKL 387 (591)
Q Consensus 322 ~~l~v~nl----~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~----~~~----a~~a~~--~l~g~~ 387 (591)
..|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||.++|||||+|.+ +++ |..|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~- 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC- 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC-
Confidence 68999999 9999999999999999999999999999999999999999996 433 788887 67995
Q ss_pred eeCCeEEEEEEec
Q 007742 388 EIVGRTLKVSSVT 400 (591)
Q Consensus 388 ~~~g~~l~v~~~~ 400 (591)
.|+|+.|.|....
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 7999999998753
No 335
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=3.3e-13 Score=106.64 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=71.7
Q ss_pred CcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEE
Q 007742 497 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 576 (591)
Q Consensus 497 ~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~ 576 (591)
..++|+|.|| |..++ +++|.++|+.| .|..+.++ .++|+|||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 4 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNL--PQDSN--------CQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESC--CSSCC--------HHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 4568999999 88888 89999999999 99999886 6799999999999999999999999999999999
Q ss_pred EEEeCchhhh
Q 007742 577 AIFMKPEDYE 586 (591)
Q Consensus 577 v~~~~~~~~~ 586 (591)
|.|++.+.+.
T Consensus 72 V~~a~~~~~~ 81 (88)
T 1wg1_A 72 VQLQPTDALL 81 (88)
T ss_dssp EEECCCCCCC
T ss_pred EEEcCCCceE
Confidence 9999887654
No 336
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=4.4e-13 Score=107.97 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=70.4
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
..+.++|+|.|| |..++ +++|.++|+.||.|..+.....++|+|||+|.+.++|.+|+..|+|..|+|+.
T Consensus 13 ~~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 13 VRAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTGGGEEEEESC--CSSCC--------HHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 456789999999 88888 89999999999999888334456899999999999999999999999999999
Q ss_pred EEEEEeCch
Q 007742 575 ISAIFMKPE 583 (591)
Q Consensus 575 l~v~~~~~~ 583 (591)
|.|.|+.+.
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 999998765
No 337
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=112.76 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=71.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGP---VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
..+|||+|||+.+++++|+++|..||. |..|.|+.+.. +.++|||||+|.+.++|..||. |++. .|.|+.|.|.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr~i~V~ 87 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM-YMGQRYVEVY 87 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC-CSSSSCCCCE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc-eeCCeEEEEE
Confidence 489999999999999999999999988 89999999875 8999999999999999999997 9996 6999999998
Q ss_pred Eec
Q 007742 398 SVT 400 (591)
Q Consensus 398 ~~~ 400 (591)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=9.8e-13 Score=106.99 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeccCCC-CCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeE
Q 007742 320 IDRKLYVGNLHF-----NMTETQLRKLFEPFGPVELVQLPLDIET-GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 393 (591)
Q Consensus 320 ~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~i~~v~i~~~~~~-~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~ 393 (591)
++++|+|.||.. ..++++|+++|++||.|..|.|+.+..+ +.++|+|||+|.+.++|.+|+..|||+ .|.|+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-YFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-EETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-EECCcE
Confidence 458999999963 2378999999999999999999987543 578999999999999999999999998 699999
Q ss_pred EEEEEec
Q 007742 394 LKVSSVT 400 (591)
Q Consensus 394 l~v~~~~ 400 (591)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999975
No 339
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.41 E-value=1.7e-12 Score=108.59 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=67.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCeeeCC--eEEEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF-GFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSS 398 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~-a~Vef~~~~~a~~a~~~l~g~~~~~g--~~l~v~~ 398 (591)
..|||+||++.+++++|+++|++||.|..|.|+... +|+ |||+|.+.++|..|+..|||. .|.| +.|+|.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~-~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTC-EEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCC-eecCCCcEEEEEe
Confidence 577899999999999999999999999999887542 577 999999999999999999997 6877 9999999
Q ss_pred ecCCC
Q 007742 399 VTDHV 403 (591)
Q Consensus 399 ~~~~~ 403 (591)
++...
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 97653
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.7e-13 Score=108.34 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=65.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
+.++|||+|||+.+|+++|+++|.+||.|..|.++.+ ++|||||+|.+.++|.+|+.. ...+.|..|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4699999999999999999999999999999999854 689999999999999765432 3446899999998866
Q ss_pred cc
Q 007742 299 EK 300 (591)
Q Consensus 299 ~~ 300 (591)
..
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 341
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=3e-13 Score=110.27 Aligned_cols=79 Identities=28% Similarity=0.518 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|..|+. ++. .+.|+.|.|.++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~-~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQI-NFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCC-EETTEECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCC-eECCEEEEEEECC
Confidence 4899999999999999999999999999999999998 89999999999999999999996 774 7999999999886
Q ss_pred CCC
Q 007742 401 DHV 403 (591)
Q Consensus 401 ~~~ 403 (591)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.41 E-value=5e-13 Score=120.24 Aligned_cols=79 Identities=27% Similarity=0.479 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
+++|||+|||+.+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.++.
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~-~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQLVA 165 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC-BCSSSBCEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEEec
Confidence 4899999999999999999999999999999999987 8899999999999999999999999996 6999999999986
Q ss_pred C
Q 007742 401 D 401 (591)
Q Consensus 401 ~ 401 (591)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 5
No 343
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.3e-13 Score=108.20 Aligned_cols=76 Identities=30% Similarity=0.422 Sum_probs=67.8
Q ss_pred CCceEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee-----CCe
Q 007742 320 IDRKLYV--GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI-----VGR 392 (591)
Q Consensus 320 ~~~~l~v--~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~-----~g~ 392 (591)
++++||| +||+..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|..|+..|||. .| .|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~lg~g~ 96 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK-EVVDDLGQKI 96 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTC-EEECTTSCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-EEccccCCCc
Confidence 3588999 77999999999999999999999998863 2789999999999999999999997 56 689
Q ss_pred EEEEEEecCC
Q 007742 393 TLKVSSVTDH 402 (591)
Q Consensus 393 ~l~v~~~~~~ 402 (591)
+|.|.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998654
No 344
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7.8e-13 Score=106.49 Aligned_cols=78 Identities=31% Similarity=0.355 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELV-QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 398 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v-~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~ 398 (591)
..++|||+|||+.+++++|+++|..||.|..| .|+.+..+ |.|||+|.+.++|..|+..|||. .|.|+.|.|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGF-QLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTC-BCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 35899999999999999999999999999999 57766533 34999999999999999999996 69999999999
Q ss_pred ecCC
Q 007742 399 VTDH 402 (591)
Q Consensus 399 ~~~~ 402 (591)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=5.7e-13 Score=121.73 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEeccCcc
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 298 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v~~~~~ 298 (591)
.++|||+|||+.+|+++|.++|.+||.|..|.|+.+.. |.++|||||+|.+.++|..|+.+.+..+.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 48999999999999999999999999999999998864 8999999999999999999998777899999999987654
No 346
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.2e-13 Score=108.01 Aligned_cols=79 Identities=10% Similarity=0.140 Sum_probs=69.7
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccc-eEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcc-cccCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGR-VKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM-RWFAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~-V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g-~~~~g 572 (591)
..+.++|+|.|| |..++ +++|.++|+.||. |..+.+. ++|+|||+|.+.++|.+|+..||| ..|+|
T Consensus 5 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 5 SSGMNKLYIGNL--SPAVT--------ADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCCCEEEECC--CTTCC--------HHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 345678999999 88888 8999999999999 6666664 589999999999999999999999 99999
Q ss_pred eEEEEEEeCchhh
Q 007742 573 RLISAIFMKPEDY 585 (591)
Q Consensus 573 ~~l~v~~~~~~~~ 585 (591)
+.|.|.|+.+..-
T Consensus 73 ~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 73 KIMEVDYSVSKKL 85 (93)
T ss_dssp EECEEEECCCCCC
T ss_pred EEEEEEEccCccc
Confidence 9999999987643
No 347
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-12 Score=104.56 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
..+.++|+|.|| .++ +++|.++|+.||.|..|.|. .++|+|||+|.+.++|.+|+..|||..|.|+.
T Consensus 12 ~~~~~~l~V~n~----~~t--------~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 12 PRKGNTLYVYGE----DMT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCCCSEEEEECS----SCC--------HHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCEEEEcCC----CCC--------HHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 346678999996 344 89999999999999999986 57899999999999999999999999999999
Q ss_pred EEEEEeCchhhhh
Q 007742 575 ISAIFMKPEDYEA 587 (591)
Q Consensus 575 l~v~~~~~~~~~~ 587 (591)
|.|.|+.+.....
T Consensus 79 l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 79 LKVNIARKQPMLD 91 (97)
T ss_dssp EEEECCSSCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999998765543
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-13 Score=111.77 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
..+|||+|||..+++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+|+. |+|. .|.|+.|.|.++.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKLEKPK 93 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC-CBTTBCCEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc-EECCcEEEEEEcC
Confidence 489999999999999999999999998877 555665578899999999999999999997 9996 6999999999986
Q ss_pred CC
Q 007742 401 DH 402 (591)
Q Consensus 401 ~~ 402 (591)
..
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=6.9e-13 Score=111.20 Aligned_cols=77 Identities=29% Similarity=0.383 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 320 IDRKLYVGNLHFNMTETQLRKLFEPFGPVE--LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 320 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
...+|||+|||+.+++++|+++|++| .|. .|.|+.+.. |.++|||||+|.+.++|.+||. +++. .|.|+.|.|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~-~l~gR~I~V~ 116 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKE-RIGHRYIEVF 116 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTC-CBTTBCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCC-EECCEEEEEE
Confidence 35799999999999999999999999 666 899998875 9999999999999999999996 5664 6999999998
Q ss_pred Eec
Q 007742 398 SVT 400 (591)
Q Consensus 398 ~~~ 400 (591)
.+.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 774
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=1e-12 Score=110.23 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=68.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeEEecc
Q 007742 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKP 295 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i~v~~ 295 (591)
....++|||+|| .+|+++|.++|.+||.|..|.+. .++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999996 69999999999999999999885 46899999999999999999 7999999999999999
Q ss_pred Ccccc
Q 007742 296 SEAEK 300 (591)
Q Consensus 296 ~~~~~ 300 (591)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87643
No 351
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=5.7e-13 Score=111.51 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=69.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPV----ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
..+|||+|||+.+++++|+++|++||.| ..|.|+.+. ++.++|||||+|.+.++|.+||.. |+. .|.|+.|.|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~-~l~gR~i~V 99 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD-LLGKRYIEL 99 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE-ESSSCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC-eeCCeEEEE
Confidence 4799999999999999999999999975 689898885 899999999999999999999964 885 699999999
Q ss_pred EEec
Q 007742 397 SSVT 400 (591)
Q Consensus 397 ~~~~ 400 (591)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 352
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.06 E-value=5e-14 Score=117.89 Aligned_cols=81 Identities=33% Similarity=0.443 Sum_probs=75.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~ 392 (591)
.++|||+|||..+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|..|+..|||. .|.|+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~ 85 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EFSGN 85 (116)
Confidence 489999999999999999999999999998 889888778899999999999999999999999996 79999
Q ss_pred EEEEEEecCC
Q 007742 393 TLKVSSVTDH 402 (591)
Q Consensus 393 ~l~v~~~~~~ 402 (591)
.|.|.++...
T Consensus 86 ~l~V~~a~~~ 95 (116)
T 2lcw_A 86 PIKVSFATRR 95 (116)
Confidence 9999998654
No 353
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=2.3e-12 Score=101.71 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc--cCC
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW--FAR 572 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~--~~g 572 (591)
..+..+|+|+|| |..++ +++|.++|++||.|..|.|+..++|||||+|.+.++|.+ |+|.. +.|
T Consensus 8 ~~~~~~l~V~~L--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g 73 (89)
T 3d2w_A 8 HHHGSKVFVGRC--TEDMT--------AEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKG 73 (89)
T ss_dssp ---CCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCC
Confidence 456778999999 88888 899999999999999999988899999999999999983 45665 469
Q ss_pred eEEEEEEeCchh
Q 007742 573 RLISAIFMKPED 584 (591)
Q Consensus 573 ~~l~v~~~~~~~ 584 (591)
+.|.|.++.++.
T Consensus 74 ~~v~v~~a~~k~ 85 (89)
T 3d2w_A 74 ISVHISNAEPKH 85 (89)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEEcCCCC
Confidence 999999998754
No 354
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=1.1e-12 Score=109.31 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=64.5
Q ss_pred CcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE--
Q 007742 497 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL-- 574 (591)
Q Consensus 497 ~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~-- 574 (591)
...+|+|.|| |..++ +++|.++|..||.|..|.|..+ |+|||+|.+.++|.+||+.|||..|+|+.
T Consensus 15 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGL--PPSGS--------WQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEEC--CSSCC--------TTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4568999999 88887 7899999999999999999765 99999999999999999999999999999
Q ss_pred ---EEEEEeCc
Q 007742 575 ---ISAIFMKP 582 (591)
Q Consensus 575 ---l~v~~~~~ 582 (591)
|.|....+
T Consensus 83 ~~~i~v~~~~~ 93 (115)
T 3beg_B 83 TAYIRVKVDGP 93 (115)
T ss_dssp CCBCEEEECC-
T ss_pred eEEEEeccCCC
Confidence 66665544
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=107.52 Aligned_cols=75 Identities=28% Similarity=0.425 Sum_probs=66.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCC---CCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEE
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET---GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 397 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~---~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~ 397 (591)
.++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|..||..|++ ++|+.|.+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~---~~G~~~~~~ 83 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE---EDGKLYLCV 83 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE---ETTEEEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh---cCCcEEEec
Confidence 48999999999999999999999999999 888777656 68999999999999999999998853 678877776
Q ss_pred Ee
Q 007742 398 SV 399 (591)
Q Consensus 398 ~~ 399 (591)
..
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 356
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4e-12 Score=101.75 Aligned_cols=75 Identities=25% Similarity=0.436 Sum_probs=65.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEec
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 400 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~ 400 (591)
.++|||+|||..+++++|+++|..||.|..| +.+..++. ||||+|.+.++|..|+. |+|. .|.|+.|.|.++.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~-~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH-SLGGHRLRVRPRE 80 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC-EETTEECCCBCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe-EECCEEEEEEECC
Confidence 3799999999999999999999999999987 34443444 99999999999999998 9996 7999999998765
Q ss_pred CC
Q 007742 401 DH 402 (591)
Q Consensus 401 ~~ 402 (591)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 357
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=3e-12 Score=111.31 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=69.4
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEE--------EEE--ecCCCeeEEEEeCCHHHHHHHHHH
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH--------IYV--DKRSAGFVYLRFESTEAAASAQRA 564 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~--------v~l--~~~~~g~afV~F~~~e~A~~A~~~ 564 (591)
..++++|||+|| |..++ +++|.++|+.||.|.. +.+ ...++|+|||+|.+.++|.+|+..
T Consensus 42 ~~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 42 GEPNCRIYVKNL--AKHVQ--------EKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp CSCCSEEEEEEE--CTTCC--------HHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH
Confidence 467789999999 88888 8999999999998865 333 345789999999999999999999
Q ss_pred hcccccCCeEEEEEEeCch
Q 007742 565 MHMRWFARRLISAIFMKPE 583 (591)
Q Consensus 565 l~g~~~~g~~l~v~~~~~~ 583 (591)
|||..|.|+.|.|.|+...
T Consensus 112 lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 112 ANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HTTBEETTEECEEEECCCS
T ss_pred hCCCEeCCcEEEEEECCCC
Confidence 9999999999999998653
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=3.2e-12 Score=104.01 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=69.4
Q ss_pred CCCceEEEcCCC--CCC--------CHHHHHHHhccCCCeeEEEEeccCCC--CCcccEEEEEeCCHHHHHHHHHHhcCC
Q 007742 319 AIDRKLYVGNLH--FNM--------TETQLRKLFEPFGPVELVQLPLDIET--GQCKGFGFVQFAQLEHAKAAQSALNGK 386 (591)
Q Consensus 319 ~~~~~l~v~nl~--~~~--------~~~~l~~~f~~~g~i~~v~i~~~~~~--~~~~g~a~Vef~~~~~a~~a~~~l~g~ 386 (591)
.++++|+|.|+- ..+ .+++|+++|++||.|..|.|+.+..+ +.++|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999993 333 34789999999999999999987643 357899999999999999999999998
Q ss_pred eeeCCeEEEEEEec
Q 007742 387 LEIVGRTLKVSSVT 400 (591)
Q Consensus 387 ~~~~g~~l~v~~~~ 400 (591)
.|.|++|.|.+..
T Consensus 83 -~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 -KFANRVVVTKYCD 95 (105)
T ss_dssp -EETTEECEEEEEC
T ss_pred -EeCCCEEEEEEeC
Confidence 6999999999874
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=2.4e-12 Score=107.90 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
..++++|+|.|+ . ++ +++|.++|+.||.|..|.+. .++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 36 ~~~~~~lfVgnl--~--~t--------e~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 36 PRKGNTLYVYGE--D--MT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCCEEEEECS--S--CC--------HHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCEEEEcCC--C--CC--------HHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 356778999997 3 44 89999999999999999886 57999999999999999999999999999999
Q ss_pred EEEEEeCchhhhh
Q 007742 575 ISAIFMKPEDYEA 587 (591)
Q Consensus 575 l~v~~~~~~~~~~ 587 (591)
|.|.|+.+.....
T Consensus 103 l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 103 LKVNIARKQPMLD 115 (121)
T ss_dssp CEEEECCSSCC--
T ss_pred EEEEEeCCCCCCC
Confidence 9999998775443
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=2e-12 Score=120.43 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=69.7
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCcc
Q 007742 217 ERDQRTVFAYQMPLKA---------TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLL 286 (591)
Q Consensus 217 ~~~~~~l~V~nLp~~~---------te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i 286 (591)
....++|||+|||..+ |+++|..+|.+||.|..|.|+. ++|||||+|.+.++|..|+ .|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467999999999998 7999999999999999999984 4899999999999999999 6999999
Q ss_pred ------------CCeeEEeccCccccc
Q 007742 287 ------------LGQPVMVKPSEAEKN 301 (591)
Q Consensus 287 ------------~g~~i~v~~~~~~~~ 301 (591)
.|+.|.|.|+...++
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999976554
No 361
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.31 E-value=5e-12 Score=99.65 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=65.6
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccc----c-------ceEEEEEecCCCeeEEEEeCCHHHHHHHHHH
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY----G-------RVKHIYVDKRSAGFVYLRFESTEAAASAQRA 564 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~----G-------~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~ 564 (591)
.++++|+|.|| |..++ +++|.++|+.| | .|..+.+..+ +|+|||+|.+.++|.+|+ .
T Consensus 4 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~ 71 (87)
T 2hzc_A 4 GSARRLYVGNI--PFGIT--------EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-A 71 (87)
T ss_dssp GGGGEEEEESC--CTTCC--------HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-G
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-h
Confidence 45678999999 88887 89999999999 8 8999988754 899999999999999999 9
Q ss_pred hcccccCCeEEEEEE
Q 007742 565 MHMRWFARRLISAIF 579 (591)
Q Consensus 565 l~g~~~~g~~l~v~~ 579 (591)
|||..|.|+.|.|..
T Consensus 72 l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 72 FDGIIFQGQSLKIRR 86 (87)
T ss_dssp GTTCEETTEECEEEC
T ss_pred cCCCEECCeEEEEeC
Confidence 999999999999873
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=1.2e-11 Score=113.05 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=71.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEEEEecC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 401 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v~~~~~ 401 (591)
++|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|..|+..++. .|.|+.|.|.+.++
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~--~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ--KYKETDLLILFKDD 186 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC--EETTEECEEEETTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC--eECCEEEEEEEhHH
Confidence 799999999999999999999999999999999886 688999999999999999999965554 69999999998776
Q ss_pred CC
Q 007742 402 HV 403 (591)
Q Consensus 402 ~~ 403 (591)
+.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 54
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=1.2e-11 Score=102.52 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=68.7
Q ss_pred CceEEEcCCCCC-----CCHHHHHHHhccCCCeeEEEEeccCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC
Q 007742 321 DRKLYVGNLHFN-----MTETQLRKLFEPFGPVELVQLPLDIE----TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391 (591)
Q Consensus 321 ~~~l~v~nl~~~-----~~~~~l~~~f~~~g~i~~v~i~~~~~----~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g 391 (591)
+++|+|.|+-.. -.+++|+++|++||.|..|.|+.+.. ++.++|+|||+|.+.++|.+|+..|||+ .|.|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-EETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-EECC
Confidence 489999999422 23689999999999999999998753 3567899999999999999999999998 6999
Q ss_pred eEEEEEEec
Q 007742 392 RTLKVSSVT 400 (591)
Q Consensus 392 ~~l~v~~~~ 400 (591)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 364
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=4.7e-12 Score=100.01 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=67.2
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEE
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 575 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l 575 (591)
.++++|+|.|| |..++ +++|.++|+.||.|..|.|..+++|+|||+|.+.++|.+|+. .+..+.|+.|
T Consensus 3 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRC--TGDMT--------EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISV 70 (88)
T ss_dssp SCCCEEEEESC--CSSSC--------HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEE
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEE
Confidence 45678999999 88888 899999999999999999988889999999999999976432 1344699999
Q ss_pred EEEEeCchhhh
Q 007742 576 SAIFMKPEDYE 586 (591)
Q Consensus 576 ~v~~~~~~~~~ 586 (591)
.|.++.+..-.
T Consensus 71 ~v~~a~~~~~~ 81 (88)
T 1wf0_A 71 HISNAEPKHNS 81 (88)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99999876543
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.9e-11 Score=98.22 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCC-----------CHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCe
Q 007742 319 AIDRKLYVGNLHFNM-----------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 387 (591)
Q Consensus 319 ~~~~~l~v~nl~~~~-----------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~ 387 (591)
.++++|+|.||.... ++++|+++|.+||.|..|.| .+. .++|||||+|.+.++|..|+..|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~- 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR- 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC-
Confidence 346899999995433 25899999999999999966 332 37999999999999999999999996
Q ss_pred eeCCeEEEEEEecCCC
Q 007742 388 EIVGRTLKVSSVTDHV 403 (591)
Q Consensus 388 ~~~g~~l~v~~~~~~~ 403 (591)
.|.|++|.|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 6999999999986543
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.3e-11 Score=114.92 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=69.4
Q ss_pred CCCcceEEEeccCCCCCCCCchh-hhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccccc---
Q 007742 495 GSPSECLLLKNMFDPAMETDPDF-DLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF--- 570 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~-~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~--- 570 (591)
....++|||+|| +..+++..+ ....+++|.++|+.||.|..|.|.. ++|||||+|.+.++|..|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL--~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 131 RKKNKTLYVGGI--DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCCEEEEECT--TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred ccCCceeecCCC--ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 346778999999 554310000 0112899999999999999999874 589999999999999999999999999
Q ss_pred ---------CCeEEEEEEeCchh
Q 007742 571 ---------ARRLISAIFMKPED 584 (591)
Q Consensus 571 ---------~g~~l~v~~~~~~~ 584 (591)
.|+.|.|.|+.++.
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999998753
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.22 E-value=3.4e-12 Score=103.75 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=62.2
Q ss_pred EeCCCCCCCHHHHHHHH------------hcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHH-HHcCCccCCeeE
Q 007742 225 AYQMPLKATERDVYEFF------------SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-ALSGQLLLGQPV 291 (591)
Q Consensus 225 V~nLp~~~te~~l~~~f------------~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al-~l~g~~i~g~~i 291 (591)
+.|||+.+++++|.+.| ++||.|..|.|+.+.. |.++|||||+|.+.++|.+|+ .|||..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777887777666 9999999999998765 789999999999999999999 699999999999
Q ss_pred EeccC
Q 007742 292 MVKPS 296 (591)
Q Consensus 292 ~v~~~ 296 (591)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=93.33 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=56.7
Q ss_pred HHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEEEeCchhh
Q 007742 522 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 585 (591)
Q Consensus 522 ~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 585 (591)
+++|.++|++||.|..|.|+..++|||||+|.+.++|..|+..++| +.|++|.|.|+.+..-
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 8999999999999999999888999999999999999999998655 6899999999887653
No 369
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=88.95 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=67.2
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeE
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 574 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~ 574 (591)
++|..+|+|... +.......+..++..+|.+.|..||.|..+.+... .+||+|.+.++|.+|+. |||..++|+.
T Consensus 4 GPpd~tv~V~~~--~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIK--SSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEE--CSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEec--cCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 566778888887 32221223445567889999999999999998743 48999999999999998 9999999999
Q ss_pred EEEEEeCch
Q 007742 575 ISAIFMKPE 583 (591)
Q Consensus 575 l~v~~~~~~ 583 (591)
|+|.+++++
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998864
No 370
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=8.6e-11 Score=110.40 Aligned_cols=89 Identities=27% Similarity=0.525 Sum_probs=76.7
Q ss_pred CCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEec---------CCCeeEEEEeCCHHHHHHHHHHh
Q 007742 495 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK---------RSAGFVYLRFESTEAAASAQRAM 565 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~---------~~~g~afV~F~~~e~A~~A~~~l 565 (591)
...+.++.+.|++++.... .++.++|.++|++||.|..|.|.. .+.|++||+|.+.++|.+|+..|
T Consensus 121 ~~~s~v~~l~n~v~~~e~~-----~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l 195 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDID-----DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 195 (222)
T ss_dssp CCBCSEEEEESSCCGGGCC-----TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccchhhcCCCHHHHH-----HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh
Confidence 3455688899997766543 356789999999999999999852 35689999999999999999999
Q ss_pred cccccCCeEEEEEEeCchhhhhc
Q 007742 566 HMRWFARRLISAIFMKPEDYEAK 588 (591)
Q Consensus 566 ~g~~~~g~~l~v~~~~~~~~~~~ 588 (591)
||+.|+|+.|.|.|++++.|.+.
T Consensus 196 ~gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 196 NGRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp TTCBSSSSBCEEEECCHHHHHTT
T ss_pred cCceECCeEEEEEEcCHHHhhhc
Confidence 99999999999999999999864
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.14 E-value=2.5e-10 Score=93.88 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeC
Q 007742 321 DRKLYVGNLHFNM----------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 390 (591)
Q Consensus 321 ~~~l~v~nl~~~~----------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~ 390 (591)
+++|+|.|+-... .+++|+++|++||.|..|.|..+. ++|+|||+|.+.++|.+|+..|||+ .|+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~-~f~ 81 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR-WFA 81 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC-EET
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC-EEC
Confidence 5899999994322 236889999999999999997553 5899999999999999999999998 699
Q ss_pred CeEEEEEEec
Q 007742 391 GRTLKVSSVT 400 (591)
Q Consensus 391 g~~l~v~~~~ 400 (591)
|+.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999974
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=1.8e-10 Score=113.39 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=68.1
Q ss_pred cCCCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccccc---
Q 007742 494 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF--- 570 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~--- 570 (591)
...|+.+|+|.|+.-+..++ +++|.++|++||.|..|.++. ++|||||+|.+.++|.+|+..|||..+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~t--------e~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCC--------HHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred cCCCCCEEEEEcCCCCCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 35788899999952256666 899999999999999998875 799999999999999999999999987
Q ss_pred CCe--EEEEEEeCc
Q 007742 571 ARR--LISAIFMKP 582 (591)
Q Consensus 571 ~g~--~l~v~~~~~ 582 (591)
.|+ .|.|.|+..
T Consensus 85 ~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 85 LGQKITLYLNFVEK 98 (345)
T ss_dssp TSCEEECEEEECSS
T ss_pred cCCceEEEEEEeec
Confidence 345 688888853
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=9.1e-10 Score=88.13 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=61.8
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEE
Q 007742 220 QRTVFAYQMP-------LKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVM 292 (591)
Q Consensus 220 ~~~l~V~nLp-------~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~ 292 (591)
..+|-|.-.+ ..+|+++|+++|.+||.|..|.|+ +.++|||||+|.+.++|..|+.. +..+.|++|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEE
Confidence 3566665544 458999999999999999999998 46899999999999999999964 3447899999
Q ss_pred eccCcccc
Q 007742 293 VKPSEAEK 300 (591)
Q Consensus 293 v~~~~~~~ 300 (591)
|.|+....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99986543
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=1.2e-09 Score=107.59 Aligned_cols=77 Identities=30% Similarity=0.432 Sum_probs=64.5
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee--CCe-
Q 007742 318 GAIDRKLYVGN--LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI--VGR- 392 (591)
Q Consensus 318 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~--~g~- 392 (591)
..++.+|||+| |+..+++++|.++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|||...+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44568999999 578999999999999999999988753 4799999999999999999999997322 345
Q ss_pred -EEEEEEec
Q 007742 393 -TLKVSSVT 400 (591)
Q Consensus 393 -~l~v~~~~ 400 (591)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67777764
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.6e-09 Score=83.12 Aligned_cols=82 Identities=10% Similarity=0.172 Sum_probs=65.0
Q ss_pred cCCCcceEEEeccCCCCCCC-CchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCC
Q 007742 494 IGSPSECLLLKNMFDPAMET-DPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR 572 (591)
Q Consensus 494 ~~~~s~~l~v~Nl~~p~~~~-~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g 572 (591)
.++|..+|+|..+ +.... ...+..++..+|.+.|..||.|..+.+..+. +||+|.+.++|.+||. |+|..++|
T Consensus 11 ~GPpD~Tv~V~~~--~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 11 QGPLDATVVVNLQ--SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCTTCEEEEEES--SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred cCCCCCeEEEEec--CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4677788999887 32100 0112344567899999999999999887443 8999999999999999 99999999
Q ss_pred eEEEEEEeC
Q 007742 573 RLISAIFMK 581 (591)
Q Consensus 573 ~~l~v~~~~ 581 (591)
+.|+|.+-.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999854
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.7e-08 Score=82.80 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=66.9
Q ss_pred CCCcceEEEeccCCCCC-CCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCC-HHHHHHHHHHhc--cccc
Q 007742 495 GSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFES-TEAAASAQRAMH--MRWF 570 (591)
Q Consensus 495 ~~~s~~l~v~Nl~~p~~-~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~-~e~A~~A~~~l~--g~~~ 570 (591)
-++..+|+|.|| +.. ++ .++|+++|+.||.|.+|.+..... .|||+|.+ ..+|..|+..|+ |..|
T Consensus 15 ~~~G~il~v~~l--~~~~~s--------redLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 15 EKIGCLLKFSGD--LDDQTC--------REDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCCEEEEEES--CCSSCC--------HHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred ccCCeEEEEecC--CCCcCC--------HHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 356678999999 666 66 899999999999999999875444 69999999 899999999994 8889
Q ss_pred CCeEEEEEEeCch
Q 007742 571 ARRLISAIFMKPE 583 (591)
Q Consensus 571 ~g~~l~v~~~~~~ 583 (591)
.|..+.+.....+
T Consensus 84 ~g~~~~~evL~Ge 96 (121)
T 1owx_A 84 RNKEVTWEVLEGE 96 (121)
T ss_dssp TSSSEEEEECCHH
T ss_pred eCcEEEEEECCCH
Confidence 9999999887643
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=3.6e-08 Score=75.34 Aligned_cols=74 Identities=28% Similarity=0.392 Sum_probs=61.4
Q ss_pred CCCCceEEEcCCCC----CCCH----HHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeee
Q 007742 318 GAIDRKLYVGNLHF----NMTE----TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 389 (591)
Q Consensus 318 ~~~~~~l~v~nl~~----~~~~----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~ 389 (591)
+|+.-+|+|..++. .+-. .+|.+.|.+||.|..++++.+. +||+|.+.++|.+|+. |||. .+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~-~v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGK-EL 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTC-EE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCe-Ee
Confidence 45557888877762 2323 6788999999999999998764 8999999999999997 9996 89
Q ss_pred CCeEEEEEEecC
Q 007742 390 VGRTLKVSSVTD 401 (591)
Q Consensus 390 ~g~~l~v~~~~~ 401 (591)
.|+.|+|..+++
T Consensus 74 ~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 74 LNRTITIALKSP 85 (91)
T ss_dssp TTEEEEEEECCC
T ss_pred CCeEEEEEeCCC
Confidence 999999998764
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=3.7e-08 Score=80.78 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=65.1
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCC-HHHHHHHHHHhc-CCeeeCCeEE
Q 007742 318 GAIDRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ-LEHAKAAQSALN-GKLEIVGRTL 394 (591)
Q Consensus 318 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~-~~~a~~a~~~l~-g~~~~~g~~l 394 (591)
-+++..|+|+||+.. ++.++|+++|+.||.|..|.+..+.. .|||+|.+ ..+|..|+..|+ +.+.|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 344589999999999 99999999999999999999987642 59999999 899999999996 3367999888
Q ss_pred EEEEe
Q 007742 395 KVSSV 399 (591)
Q Consensus 395 ~v~~~ 399 (591)
.+...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88654
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1e-07 Score=73.13 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=60.7
Q ss_pred CCcEEEEeCCCCC------CCH---HHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCe
Q 007742 219 DQRTVFAYQMPLK------ATE---RDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQ 289 (591)
Q Consensus 219 ~~~~l~V~nLp~~------~te---~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~ 289 (591)
+..+|+|.-++.. ..+ .+|.+.|.+||.|+.++++.++ +||+|.+.++|.+||.|||..+.|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4578999988743 221 4689999999999999999764 9999999999999999999999999
Q ss_pred eEEeccCc
Q 007742 290 PVMVKPSE 297 (591)
Q Consensus 290 ~i~v~~~~ 297 (591)
.|+|+...
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99997653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.55 E-value=2e-07 Score=87.18 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=65.1
Q ss_pred ceEEEcCCC-----CCCCHHHHHHHhccCCCeeEEEEeccCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCe
Q 007742 322 RKLYVGNLH-----FNMTETQLRKLFEPFGPVELVQLPLDIE----TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 392 (591)
Q Consensus 322 ~~l~v~nl~-----~~~~~~~l~~~f~~~g~i~~v~i~~~~~----~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~ 392 (591)
..+.+.|+- ..-.+++|.+.|.+||.|..|.|+.+.. ++.++|++||+|.+.++|.+|+..|||+ .|.|+
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-~~~gr 203 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAGR 203 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BSSSS
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-eECCe
Confidence 456666662 2345678999999999999999985543 3488999999999999999999999998 59999
Q ss_pred EEEEEEec
Q 007742 393 TLKVSSVT 400 (591)
Q Consensus 393 ~l~v~~~~ 400 (591)
+|.+.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999874
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=7.7e-07 Score=69.47 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=66.6
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccc-----cceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccccc
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY-----GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF 570 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~-----G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~ 570 (591)
...++|-|.|| |.+++ ...|+.++..| |.|..|.|..+-.| |+|+|.+...|-+|..+|+|..|
T Consensus 19 ~~~rtiaL~~i--pDtvn--------darIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 19 ELETLICLFPL--SDKVS--------PSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TTTSCEEEECC--CTTCC--------HHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEE
T ss_pred cCCcEEEEecC--CCCCC--------HHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeee
Confidence 34678999999 88887 78899999999 99999999865454 89999999999999999999999
Q ss_pred CCeEEEEEEeCc
Q 007742 571 ARRLISAIFMKP 582 (591)
Q Consensus 571 ~g~~l~v~~~~~ 582 (591)
.|++|.|.-+.+
T Consensus 88 ~gr~Lr~gTv~e 99 (117)
T 2l9w_A 88 QGKVIRSGTIND 99 (117)
T ss_dssp TTEEEEEECHHH
T ss_pred cCeEEEecCHHH
Confidence 999999976543
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=2e-06 Score=67.18 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=65.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPF-----GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 396 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~-----g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~v 396 (591)
++|.|.|||..++...|+.+++++ |.|..|.+..+. +-|+|+|.+...|.+|..+|+| .+|.|++|.+
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G-~ef~gr~Lr~ 94 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNG-SQFQGKVIRS 94 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSS-EEETTEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCC-eeecCeEEEe
Confidence 899999999999999999999999 999999998764 3499999999999999999999 4899999999
Q ss_pred EEe
Q 007742 397 SSV 399 (591)
Q Consensus 397 ~~~ 399 (591)
...
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 764
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00012 Score=56.86 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcC-----CCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcCCccCCeeEEe
Q 007742 219 DQRTVFAYQMPLKATERDVYEFFSKA-----GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMV 293 (591)
Q Consensus 219 ~~~~l~V~nLp~~~te~~l~~~f~~~-----G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g~~i~g~~i~v 293 (591)
-.++|.|.|||..+.++.|.-+|+.- |.|..|.... +-|+|+|.+.+.|+..|+...+.+.|.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 35899999999999999999999872 6888887753 4699999999999988888788999999999
Q ss_pred ccCccccccccccCCCCCCCCCCCCCCCceEEEcCCCCCCC
Q 007742 294 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMT 334 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 334 (591)
.+..+.. ..+|++.+|++.+.
T Consensus 79 ~P~~~~~--------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA--------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC--------------------CCCCCCCSCCCCCC
T ss_pred EcCCCCC--------------------cceEeeecCCCCCC
Confidence 7753321 26888888887664
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=5.9e-05 Score=58.97 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=62.1
Q ss_pred ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCCeEEEEE
Q 007742 499 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAI 578 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g~~l~v~ 578 (591)
++|+|.|| ++....++ ++.+.+.++|..|+.+......+ +-.-+.|.|.++++|.+|-..||+..|.|+.|.|.
T Consensus 6 ntLiitnl-~~~vF~~~----~lk~~~e~Lf~~~~~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVA-NDDVFSES----ETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECC-CGGGGSTT----THHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecC-CHHHcCCH----HHHHHHHHHHHhhCcCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 47999999 44333322 23578899999999888775553 34467999999999999999999999999999999
Q ss_pred EeCc
Q 007742 579 FMKP 582 (591)
Q Consensus 579 ~~~~ 582 (591)
|+.+
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9764
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.0011 Score=53.39 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=58.8
Q ss_pred cceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccccCC-eEEE
Q 007742 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR-RLIS 576 (591)
Q Consensus 498 s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~~g-~~l~ 576 (591)
...|.|.++ |... ...|..+|++||.|.....+ ....+..|.|.+..+|++||. .||..|+| -.|-
T Consensus 24 ~~wVtVFGF--p~~~---------~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIG 90 (119)
T 1wwh_A 24 DTWVTVFGF--PQAS---------ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIG 90 (119)
T ss_dssp GGEEEEECC--CGGG---------HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECE
T ss_pred CCEEEEECC--CHHH---------HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEE
Confidence 456889998 5543 57899999999999988874 356788999999999999999 49999985 6677
Q ss_pred EEEeCch
Q 007742 577 AIFMKPE 583 (591)
Q Consensus 577 v~~~~~~ 583 (591)
|..+..+
T Consensus 91 V~p~~d~ 97 (119)
T 1wwh_A 91 VKPCIDK 97 (119)
T ss_dssp EEECCCH
T ss_pred EEECCCH
Confidence 7766543
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0026 Score=49.73 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=62.1
Q ss_pred CceEEEcCCCCCC-C----HHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCCeEEE
Q 007742 321 DRKLYVGNLHFNM-T----ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 395 (591)
Q Consensus 321 ~~~l~v~nl~~~~-~----~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g~~l~ 395 (591)
+++|+|.||+..+ . .+.+.++|..|+++......+.- .-+.|.|.++++|.+|-..|++. .|.|+.++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~-~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKT-EFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTS-EETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccc-eecCceeE
Confidence 3789999998754 2 25788999999999888776542 35899999999999999999996 79999999
Q ss_pred EEEecC
Q 007742 396 VSSVTD 401 (591)
Q Consensus 396 v~~~~~ 401 (591)
|.++..
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999873
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.07 E-value=0.00046 Score=56.30 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=60.5
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEE-Eec------------------CCCeeEEEEeCCHHHHHH
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIY-VDK------------------RSAGFVYLRFESTEAAAS 560 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~-l~~------------------~~~g~afV~F~~~e~A~~ 560 (591)
-|.|.++ |... ...|.++|++||.|..-. +.. .+..+..|+|.+..+|.+
T Consensus 9 ~VtVFGF--p~~~---------~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~r 77 (132)
T 3p3d_A 9 AILVFGY--PETM---------ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVD 77 (132)
T ss_dssp EEEEECC--CGGG---------HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHH
T ss_pred EEEEEec--CHHH---------HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHH
Confidence 5788888 5543 578999999999997621 111 135678999999999999
Q ss_pred HHHHhcccccCCeEEEEEEeCchhhhhc
Q 007742 561 AQRAMHMRWFARRLISAIFMKPEDYEAK 588 (591)
Q Consensus 561 A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 588 (591)
|+. .||..|+|..|-|..+++....++
T Consensus 78 AL~-~NG~ii~G~mIGV~Py~~~~ve~l 104 (132)
T 3p3d_A 78 ALL-ENGAVFNGVLLGVIPYTKDAVERL 104 (132)
T ss_dssp HHT-TTTCEETTEECEEEECCHHHHHHH
T ss_pred HHH-hCCeEeCcEEEEEEECCHHHHHHH
Confidence 998 599999999999999887765543
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.04 E-value=0.0043 Score=47.53 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 384 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~ 384 (591)
..++| ++|+.+...||.++|++||.| .|..+-+. .|||.|.+.+.|..|+.++.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999955 35555543 69999999999999998773
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.90 E-value=0.0055 Score=47.09 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=55.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCC--CcccEEEEEeCCHHHHHHHHHHhcCCeeeCC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETG--QCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 391 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~--~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g 391 (591)
..|.|++||+.+|++++.+.+.....+........+.+. ..-.-|||.|.+.+++......++|...++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 478999999999999999999999877666555443221 2335799999999999999999999754443
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.67 E-value=0.009 Score=45.88 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=54.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--ccceEEEEecCcchHHHHH-HHcCCccC
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR--SKGVGYIEFYDVMSVPMAI-ALSGQLLL 287 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~--~~G~afV~F~~~e~A~~Al-~l~g~~i~ 287 (591)
.+|.|++||+.+|++++.+.+..+..+.....+..+.+.. .-.-|||.|.+.+++.... .++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998877666666543322 3457999999999998888 58988764
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.54 E-value=0.012 Score=45.14 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=44.6
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
....+++| ++ |.++. ..||.++|+.||.|.--.|. ...|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~F--P~ewK--------t~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TF--PKEWK--------TSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-EC--CTTCC--------HHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eC--Chhhh--------hHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 34456667 88 77777 89999999999965544444 4579999999999999998764
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.018 Score=44.72 Aligned_cols=74 Identities=12% Similarity=-0.039 Sum_probs=58.3
Q ss_pred CCcceEEEeccCCCCCCCCchhhhhHHHHHHHHhcc-----ccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhccccc
Q 007742 496 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK-----YGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF 570 (591)
Q Consensus 496 ~~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~-----~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~~ 570 (591)
....+|.|.|| |..+. .+.|.-+|++ -|.|..+.... +-|+|+|.+.+.|+..++. .-..|
T Consensus 6 ~~~~~I~V~~l--Pp~~~--------~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L 71 (104)
T 2dhx_A 6 SGGVAVEVRGL--PPAVP--------DELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHEL 71 (104)
T ss_dssp CCCCEEEEESC--CTTSC--------HHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBS
T ss_pred cCccEEEEECC--CCCCC--------hhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-Cccee
Confidence 34568999999 77665 6788888876 26888988764 6789999999999988873 35778
Q ss_pred CCeEEEEEEeCch
Q 007742 571 ARRLISAIFMKPE 583 (591)
Q Consensus 571 ~g~~l~v~~~~~~ 583 (591)
.|..|.|.-+.+.
T Consensus 72 ~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 72 HGAQLSLRPAPPR 84 (104)
T ss_dssp SSSBCEEEECCCC
T ss_pred cCeEEEEEcCCCC
Confidence 8999998765543
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.49 E-value=0.0043 Score=47.70 Aligned_cols=54 Identities=26% Similarity=0.336 Sum_probs=44.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 384 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~ 384 (591)
..++| ++|+.+.-.||.++|++||.| .|..+-+. .|||.|.+.+.|..|+.++.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45556 999999999999999999944 46665543 69999999999999998774
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.42 E-value=0.015 Score=46.86 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=58.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcCCeeeCC-eEEEEEEe
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-RTLKVSSV 399 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~g-~~l~v~~~ 399 (591)
...|.|.+.|+.. ...|...|+.||.|...... . ......|.|.+..+|.+|| ..||. .|.| ..|-|.++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL-~kNG~-ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKAL-SKDGR-IFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHH-TTTTC-EETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHH-HhCCe-EecCCEEEEEEEC
Confidence 3789999999875 67888999999999888762 1 2458999999999999999 78997 4764 77777776
Q ss_pred cC
Q 007742 400 TD 401 (591)
Q Consensus 400 ~~ 401 (591)
.+
T Consensus 95 ~d 96 (119)
T 1wwh_A 95 ID 96 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.0087 Score=46.04 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=42.5
Q ss_pred ceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc
Q 007742 499 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
.+++| ++ |.++. ..||.++|+.||.|.--.|. ...|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~F--P~ewK--------t~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF--PKEWK--------TSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC--CTTCC--------HHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC--Chhhh--------hHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 88 77776 89999999999955433444 4579999999999999999764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.33 E-value=0.028 Score=43.37 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=49.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCC--CCcccEEEEEeCCHHHHHHHHHHhcCCeeeC
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET--GQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 390 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~--~~~~g~a~Vef~~~~~a~~a~~~l~g~~~~~ 390 (591)
-.|.|+.||+.+|++++.+.+.+.-.+..........+ ...-.-|||.|.+.++.......++|.+.++
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 68999999999999999888887655433222221111 1122469999999999999999999975344
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.43 E-value=0.064 Score=43.74 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=54.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeccC-----------C-CC-CcccEEEEEeCCHHHHHHHHHHhcCCe
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELV-QLPLDI-----------E-TG-QCKGFGFVQFAQLEHAKAAQSALNGKL 387 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v-~i~~~~-----------~-~~-~~~g~a~Vef~~~~~a~~a~~~l~g~~ 387 (591)
..|.|.+.|+. ....|...|++||.|..- .+.... . .. .......|+|.+..+|.+|| ..||.
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~- 84 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA- 84 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC-
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe-
Confidence 57888899754 456677999999998652 221100 0 00 13568899999999999999 78997
Q ss_pred eeCCeEEEEEEec
Q 007742 388 EIVGRTLKVSSVT 400 (591)
Q Consensus 388 ~~~g~~l~v~~~~ 400 (591)
.|.|..|-|.++.
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 5999977777664
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.87 E-value=0.031 Score=56.85 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCccceEEEEecCcchHHHHHHHcC
Q 007742 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSG 283 (591)
Q Consensus 221 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~G~afV~F~~~e~A~~Al~l~g 283 (591)
+.|+|. .|..+++.+|.++|.+||+|.++.+..+. .-||.|||.+.+++..++...+
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 789997 68999999999999999999999887543 2599999999999987775433
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.33 E-value=0.053 Score=41.82 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=47.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--CccceEEEEecCcchHHHHH-HHcCCccC
Q 007742 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR--RSKGVGYIEFYDVMSVPMAI-ALSGQLLL 287 (591)
Q Consensus 220 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~~~~d~~~g--~~~G~afV~F~~~e~A~~Al-~l~g~~i~ 287 (591)
+-+|.|+.||+.+|++++.+.+..+-.+.....+..+.+- ..-.-|||.|.+.+++.... ..+|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4689999999999999988888765443322222222211 12346899999999998888 57877753
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.96 E-value=0.083 Score=53.72 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=41.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHH
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 380 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~ 380 (591)
+.|+|. .|..+++.+|.+.|+.||+|..+.+..+. .-||.|||.+.+++..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHH
Confidence 789996 79999999999999999999999998654 369999999999888665
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.08 E-value=7.3 Score=40.29 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=44.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 007742 321 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385 (591)
Q Consensus 321 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g 385 (591)
...++| .+|..+...+|.++|+.||.+ .|..+.+ ..|||.|.+.+.|..++.+++.
T Consensus 440 ~~vl~v-~f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEE-ECCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEE-eCCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 355555 499999999999999999965 4555433 2599999999999999988853
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.53 E-value=16 Score=37.78 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=41.1
Q ss_pred cceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc
Q 007742 498 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 498 s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
..+++|. + |..+. ..+|.++|+.||.|.-..| ...+|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f--~~~~~--------~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-F--PKEWK--------TSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-C--CTTCC--------HHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-C--CCCCC--------HHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 4566666 5 55544 6899999999995433222 35679999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.00 E-value=72 Score=23.53 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=39.3
Q ss_pred CcceEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhc
Q 007742 497 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 566 (591)
Q Consensus 497 ~s~~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~ 566 (591)
..+.|.|-|+ |..+. ..++.-...-.|.--.+... .|-|.|.|.+.++...|+..|-
T Consensus 11 qnclikiini--pqgtl--------kaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINI--PQGTL--------KAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECC--CTTCC--------HHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEec--CCCce--------eeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHH
Confidence 4456889999 77654 34444444445544455433 5779999999999999998873
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=45.25 E-value=90 Score=23.01 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=51.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC------CeeeCCeEEE
Q 007742 322 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG------KLEIVGRTLK 395 (591)
Q Consensus 322 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g------~~~~~g~~l~ 395 (591)
+.|-|-|+|..+-..++.-.....|---.|..+ .|.|.+.|.+.++...|++.|-+ .+++.|....
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 667788999999998888777777755556554 35699999999999999987743 1456676665
Q ss_pred EE
Q 007742 396 VS 397 (591)
Q Consensus 396 v~ 397 (591)
|.
T Consensus 85 vi 86 (129)
T 4eyt_A 85 VI 86 (129)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=38.09 E-value=67 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=28.8
Q ss_pred eEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc
Q 007742 535 VKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW 569 (591)
Q Consensus 535 V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~ 569 (591)
|..+.++..-.|+.||++.-.++...++..+.|..
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCCce
Confidence 66777887789999999999988888887776653
No 406
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=34.69 E-value=64 Score=26.30 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=50.3
Q ss_pred CCCCCCchhhhhHHHHHHHHhccccceEEEEEec----CC----------------CeeEEEEeCCHHHHHHHHHHh---
Q 007742 509 PAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK----RS----------------AGFVYLRFESTEAAASAQRAM--- 565 (591)
Q Consensus 509 p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~----~~----------------~g~afV~F~~~e~A~~A~~~l--- 565 (591)
|.-..+.+.|.++-+..-.+|..||.+..+..-. .+ .-|.+|+|.+.+...+|.+++
T Consensus 34 pVP~ankeaY~~~A~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kvm~D 113 (141)
T 2okq_A 34 AVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSD 113 (141)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhhcC
Confidence 4445577889898899999999999888776511 11 237899999999888877543
Q ss_pred -------cccccCCeEEEEE
Q 007742 566 -------HMRWFARRLISAI 578 (591)
Q Consensus 566 -------~g~~~~g~~l~v~ 578 (591)
+-..|+|++|...
T Consensus 114 PRm~~~~~~mPFDgkRMI~G 133 (141)
T 2okq_A 114 PRMKEFGESMPFDGKRMIYG 133 (141)
T ss_dssp HHHHHTTSSCSSCTTTCEEE
T ss_pred ccccccCCCCCCCcceeEec
Confidence 1235888876653
No 407
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=32.60 E-value=44 Score=26.06 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCeeEEEEeCCHHHHHHHHHHhcccc
Q 007742 534 RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW 569 (591)
Q Consensus 534 ~V~~v~l~~~~~g~afV~F~~~e~A~~A~~~l~g~~ 569 (591)
.|.++..+..-+||.|||=.+..+...|+..+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 588998888889999999999999999987765544
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.60 E-value=51 Score=28.16 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=47.3
Q ss_pred cceEEEeccCCCC-CCCCchhhhhHHHHHHHHh--ccccceEEEEE--ecCCCeeEEEEeCCHHHHHHHHHHhc------
Q 007742 498 SECLLLKNMFDPA-METDPDFDLEIQGDVEEEC--SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASAQRAMH------ 566 (591)
Q Consensus 498 s~~l~v~Nl~~p~-~~~~~~~~~~~~edl~~~f--~~~G~V~~v~l--~~~~~g~afV~F~~~e~A~~A~~~l~------ 566 (591)
+.+++|-|+ |. ...+..+.-.=-..|.+.| ..|..+.-..+ .....|+|+|.|.+--..-.-...|+
T Consensus 12 PwmgIl~N~--~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek~Fe~~ 89 (172)
T 4e8u_A 12 PWKGIVVNI--PTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDKAYTVD 89 (172)
T ss_dssp SCEEEEECC--CCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEec--cccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHHHHHHc
Confidence 346788888 54 2121111111135788877 88876664433 44457899999986443332222222
Q ss_pred --ccc------cCCeEEEEEEeCchhhhh
Q 007742 567 --MRW------FARRLISAIFMKPEDYEA 587 (591)
Q Consensus 567 --g~~------~~g~~l~v~~~~~~~~~~ 587 (591)
|+. ..+..|.-=.|..+.|+.
T Consensus 90 ~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s 118 (172)
T 4e8u_A 90 GHGKKDWLKKDGPKLGLYGWIARADDYNG 118 (172)
T ss_dssp TCSHHHHTCSSSCCCSCEEEECBHHHHHS
T ss_pred CCCHHHHhhCCCCCCceEEEecccccccC
Confidence 221 234556666666666654
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.82 E-value=1.1e+02 Score=26.10 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=33.7
Q ss_pred eEEEcCCCCC---------CCHHHHHHHh--ccCCCeeEEEEeccCCCCCcccEEEEEeCCH
Q 007742 323 KLYVGNLHFN---------MTETQLRKLF--EPFGPVELVQLPLDIETGQCKGFGFVQFAQL 373 (591)
Q Consensus 323 ~l~v~nl~~~---------~~~~~l~~~f--~~~g~i~~v~i~~~~~~~~~~g~a~Vef~~~ 373 (591)
.++|.|+|.. .....|.+.| ..|.++....+ ... ....|+|.|+|..-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCC
Confidence 5667788762 4457899977 99998874444 332 23578999999874
No 410
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=24.70 E-value=1.9e+02 Score=21.87 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCCchhhhhHHHHHHHHhccccceEEE------EEecCC-CeeEEEEeCCHHHHHHHH
Q 007742 512 ETDPDFDLEIQGDVEEECSKYGRVKHI------YVDKRS-AGFVYLRFESTEAAASAQ 562 (591)
Q Consensus 512 ~~~~~~~~~~~edl~~~f~~~G~V~~v------~l~~~~-~g~afV~F~~~e~A~~A~ 562 (591)
++|.+.|.+-.+.....+.+||.-.-+ .+..+. ...++|+|.+.+.|...+
T Consensus 14 v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~~~eG~~~~~~viieFpS~~aa~~~~ 71 (99)
T 2fiu_A 14 VRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCY 71 (99)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHHcCcEEEEECCCceEEecCCcCeEEEEECCCHHHHHHHH
Confidence 456677777777888888888743322 222322 356788999999998755
No 411
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=24.31 E-value=2e+02 Score=22.05 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=42.5
Q ss_pred ceEEEeccCCCCCCCCch-hhhhHHHH-HHHHhcccc-----ceEEEEE-ec------CCCeeEEEEeCCHHHHHH---H
Q 007742 499 ECLLLKNMFDPAMETDPD-FDLEIQGD-VEEECSKYG-----RVKHIYV-DK------RSAGFVYLRFESTEAAAS---A 561 (591)
Q Consensus 499 ~~l~v~Nl~~p~~~~~~~-~~~~~~ed-l~~~f~~~G-----~V~~v~l-~~------~~~g~afV~F~~~e~A~~---A 561 (591)
+.|.|.++ |+...+.. +.+.|.++ |.+-|-.-+ .|..+.- +. .......|.|....+=++ |
T Consensus 4 ~NirIiGv--PE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILka 81 (100)
T 2w7a_A 4 GNLRLIGV--PESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRA 81 (100)
T ss_dssp TEEEEECC--CCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHH
T ss_pred cceeEEeC--CCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHH
Confidence 46899999 77644332 12223233 333343222 2344432 11 134567888888765444 4
Q ss_pred HHHhcccccCCeEEEEE
Q 007742 562 QRAMHMRWFARRLISAI 578 (591)
Q Consensus 562 ~~~l~g~~~~g~~l~v~ 578 (591)
........|.|.+|.++
T Consensus 82 ar~k~~vtykg~pirls 98 (100)
T 2w7a_A 82 AREKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHHCCEEETTEEEEEE
T ss_pred HHHhCceeeCCcceeec
Confidence 44444566899999875
No 412
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.10 E-value=66 Score=25.04 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.8
Q ss_pred CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 007742 347 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385 (591)
Q Consensus 347 ~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g 385 (591)
.|.+|..+.. .+||.|||=....+...|++.+.+
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 4777766433 589999999999999999877665
No 413
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=23.09 E-value=2.7e+02 Score=21.65 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=42.6
Q ss_pred eEEEeccCCCCCCCCchhhhhHHHHHHHHhccccceEEEEEecCCCeeEEEEeC--CHHHHHHHHHHh
Q 007742 500 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFE--STEAAASAQRAM 565 (591)
Q Consensus 500 ~l~v~Nl~~p~~~~~~~~~~~~~edl~~~f~~~G~V~~v~l~~~~~g~afV~F~--~~e~A~~A~~~l 565 (591)
.|.|.++ | ++..+++..+...+-..|..-+...|+..+.|...|.|. +.+.-.+|++.|
T Consensus 44 ~i~itgv--p-----eqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkem 104 (170)
T 4hhu_A 44 VIVITGV--P-----EQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEM 104 (170)
T ss_dssp EEEEESC--C-----HHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHH
T ss_pred EEEEeCC--c-----HHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHH
Confidence 5778888 4 356666665555566667655666678888888888884 788888898876
No 414
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.84 E-value=1.9e+02 Score=21.54 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.0
Q ss_pred CeeEEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 007742 347 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 385 (591)
Q Consensus 347 ~i~~v~i~~~~~~~~~~g~a~Vef~~~~~a~~a~~~l~g 385 (591)
.|..|.++.. -.||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 3666666532 589999999999888888877766
No 415
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.12 E-value=2.6e+02 Score=20.85 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=35.4
Q ss_pred CCCchhhhhHHHHHHHHhccccceEEE-----EEecC--CCeeEEEEeCCHHHHHHHHH
Q 007742 512 ETDPDFDLEIQGDVEEECSKYGRVKHI-----YVDKR--SAGFVYLRFESTEAAASAQR 563 (591)
Q Consensus 512 ~~~~~~~~~~~edl~~~f~~~G~V~~v-----~l~~~--~~g~afV~F~~~e~A~~A~~ 563 (591)
++|++.+.+-.+.....+.+||.-.-+ .+.+. ....+.|+|.+.+.|..++.
T Consensus 13 v~d~e~y~~Y~~~~~~~l~~~GG~~l~rg~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 13 PKDAEKLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp ECCHHHHHHHHHHHHHHHHTTTCEEEEEEECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCEEEEEcccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 346677777677888888898633221 12332 45678999999999988664
Done!