Your job contains 1 sequence.
>007743
MAGNDELKKKRKRKRSRSKATVAEEAEQQQVPKEEQEEGDDEDEEIEEAVEEKKDKKKKN
KKGSEEKSQEKHDGDEDEEEETKINVKKSGGGGGGGGIMSTTSFDSLGLSQHTFRAIQDM
GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI
CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQ
NTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLAR
LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCN
SVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW
IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQK
KLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFS
SPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVRY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007743
(591 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 1833 4.3e-189 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 1661 7.2e-171 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 1635 4.1e-168 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 1626 3.7e-167 1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 1624 6.0e-167 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 1603 1.0e-164 1
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 1548 6.8e-159 1
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 1547 8.6e-159 1
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 1545 1.4e-158 1
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 1545 1.4e-158 1
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 1543 2.3e-158 1
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 1541 3.7e-158 1
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 1541 3.7e-158 1
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 1541 3.7e-158 1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 1532 3.3e-157 1
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 1532 3.3e-157 1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 1529 7.0e-157 1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 1529 7.0e-157 1
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 1528 8.9e-157 1
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 1527 1.1e-156 1
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 1522 3.8e-156 1
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 1466 3.3e-150 1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 1309 1.4e-133 1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 1309 1.4e-133 1
MGI|MGI:1924841 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) bo... 894 8.9e-92 2
RGD|1308990 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box po... 902 1.9e-90 1
UNIPROTKB|E9PIF2 - symbol:DDX10 "Probable ATP-dependent R... 901 2.5e-90 1
UNIPROTKB|Q13206 - symbol:DDX10 "Probable ATP-dependent R... 901 2.5e-90 1
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 898 5.1e-90 1
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 897 6.5e-90 1
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 895 1.1e-89 1
UNIPROTKB|F1P0I3 - symbol:DDX10 "Probable ATP-dependent R... 891 2.8e-89 1
UNIPROTKB|Q5ZJF6 - symbol:DDX10 "Probable ATP-dependent R... 891 2.8e-89 1
ASPGD|ASPL0000061778 - symbol:AN0589 species:162425 "Emer... 881 3.2e-88 1
POMBASE|SPAC1093.05 - symbol:SPAC1093.05 "ATP-dependent R... 859 6.9e-86 1
UNIPROTKB|A4RGU2 - symbol:DBP4 "ATP-dependent RNA helicas... 857 1.1e-85 1
ZFIN|ZDB-GENE-071022-2 - symbol:ddx10 "DEAD (Asp-Glu-Ala-... 854 2.4e-85 1
TAIR|locus:2160225 - symbol:AT5G54910 species:3702 "Arabi... 842 4.4e-84 1
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica... 809 1.4e-80 1
SGD|S000003570 - symbol:HCA4 "DEAD box RNA helicase" spec... 800 1.2e-79 1
UNIPROTKB|F1NM06 - symbol:DDX31 "Uncharacterized protein"... 382 1.6e-78 4
UNIPROTKB|H7C452 - symbol:DDX18 "ATP-dependent RNA helica... 508 1.2e-77 2
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 777 3.4e-77 1
TAIR|locus:2064844 - symbol:AT2G40700 species:3702 "Arabi... 412 7.1e-77 4
UNIPROTKB|F1N5H8 - symbol:DDX31 "Uncharacterized protein"... 388 2.0e-74 4
FB|FBgn0030855 - symbol:CG5800 species:7227 "Drosophila m... 729 4.1e-72 1
UNIPROTKB|Q5ZLN8 - symbol:DDX55 "ATP-dependent RNA helica... 728 5.3e-72 1
RGD|1304895 - symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box po... 378 9.2e-72 4
UNIPROTKB|F1MW45 - symbol:DDX55 "ATP-dependent RNA helica... 722 2.3e-71 1
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 722 2.3e-71 1
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 721 2.9e-71 1
UNIPROTKB|F1NJA0 - symbol:DDX55 "ATP-dependent RNA helica... 720 3.7e-71 1
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 719 4.8e-71 1
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 719 4.8e-71 1
UNIPROTKB|Q2NL08 - symbol:DDX55 "ATP-dependent RNA helica... 716 9.9e-71 1
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 715 1.3e-70 1
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 711 3.3e-70 1
UNIPROTKB|F6XWM4 - symbol:DDX55 "Uncharacterized protein"... 660 3.7e-70 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 708 7.0e-70 1
TAIR|locus:2825324 - symbol:AT1G71370 species:3702 "Arabi... 708 7.0e-70 1
DICTYBASE|DDB_G0271708 - symbol:ddx31 "DEAD/DEAH box heli... 404 9.0e-70 3
FB|FBgn0027602 - symbol:CG8611 species:7227 "Drosophila m... 407 7.7e-69 4
FB|FBgn0037561 - symbol:CG9630 species:7227 "Drosophila m... 661 1.8e-68 2
UNIPROTKB|F1S0U0 - symbol:DDX31 "Uncharacterized protein"... 367 2.2e-67 4
DICTYBASE|DDB_G0291588 - symbol:ddx55 "DEAD/DEAH box heli... 532 2.6e-67 2
UNIPROTKB|F8WAJ0 - symbol:DDX31 "Probable ATP-dependent R... 389 8.5e-67 3
TAIR|locus:2153564 - symbol:AT5G05450 species:3702 "Arabi... 677 1.3e-66 1
UNIPROTKB|Q9H8H2 - symbol:DDX31 "Probable ATP-dependent R... 389 3.9e-66 3
TAIR|locus:2159527 - symbol:STRS2 "STRESS RESPONSE SUPPRE... 656 2.3e-64 1
TAIR|locus:2159517 - symbol:PDE340 "PIGMENT DEFECTIVE 340... 647 2.0e-63 1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 636 3.0e-62 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 636 3.0e-62 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 630 1.3e-61 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 630 1.3e-61 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 592 5.4e-61 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 622 9.0e-61 1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 621 1.2e-60 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 620 1.5e-60 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 620 1.5e-60 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 620 1.5e-60 1
ASPGD|ASPL0000034540 - symbol:spb4 species:162425 "Emeric... 437 2.0e-60 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 617 3.1e-60 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 616 3.9e-60 1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 608 2.7e-59 1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 605 5.7e-59 1
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 603 9.3e-59 1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 600 1.9e-58 1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 599 2.5e-58 1
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 599 2.5e-58 1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 597 4.0e-58 1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 597 4.0e-58 1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 597 4.0e-58 1
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 594 8.4e-58 1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 589 2.8e-57 1
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 553 9.4e-57 2
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 583 1.2e-56 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 581 2.0e-56 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 578 4.2e-56 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 578 4.2e-56 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 577 5.3e-56 1
WARNING: Descriptions of 802 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
Identities = 356/481 (74%), Positives = 416/481 (86%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157
IM+ +FDSL LS+ T AI++MGFQ+MTQIQA ++ PL+ GKDVLGAARTGSGKTLAFL
Sbjct: 85 IMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFL 144
Query: 158 IPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217
IPAVELL+ +F+PRNGTGVIVICPTRELAIQT VA++LLK+HSQTV +VIGG+ RR E
Sbjct: 145 IPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSE 204
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
A+RI G NL++ATPGRLLDHLQNTK FIYK+LKCLVIDEADRILE NFEE+M +I+K+L
Sbjct: 205 AQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKIL 264
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
PK RQTALFSATQT KV+DLAR+S T+PV++DVDDGR KVTNEGL+QGYCVVPS +R
Sbjct: 265 PKT-RQTALFSATQTSKVKDLARVSL-TSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRL 322
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
ILL SFLK+NL+KK+MVFFS+C SV+FH+E+++ VD DIHG Q +RT TFFDF K
Sbjct: 323 ILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMK 382
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
A+KGILLCTDVAARGLDIP+VDWI+QYDPPD+P EYIHRVGRTARGEGA+G ALL LIPE
Sbjct: 383 AKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPE 442
Query: 458 ELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH 517
ELQF+RYLKAAKVPVKE EF++K+L+NVQS LEK VA +Y LNK AKDAYR+Y+ AYNSH
Sbjct: 443 ELQFIRYLKAAKVPVKELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSH 502
Query: 518 SMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYG 577
S+KDIFNVHRLDL AVA SFCFSSPPKVNL I+S A K RK RK +G RNGFS +PYG
Sbjct: 503 SLKDIFNVHRLDLLAVAESFCFSSPPKVNLNIESGAGKVRK-ARKQQG-RNGFSPYSPYG 560
Query: 578 R 578
+
Sbjct: 561 K 561
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 1661 (589.8 bits), Expect = 7.2e-171, P = 7.2e-171
Identities = 323/501 (64%), Positives = 397/501 (79%)
Query: 83 KINVKKSXXXXXXXXIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDV 142
++ K+ IM+ +F+SL LS +T+++I++MGF MTQIQA+A+PPLM+G+DV
Sbjct: 135 EVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDV 194
Query: 143 LGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202
LGAARTGSGKTLAFLIPAVELLY +F PRNGTGV+VICPTRELAIQ++ VAK+LLKYHS
Sbjct: 195 LGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHS 254
Query: 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262
QTVG VIGG R+ EAE + KGVNLLVATPGRLLDHL+NT GFI+KNLK LV+DEADRIL
Sbjct: 255 QTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRIL 314
Query: 263 EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNE 322
E NFEE++++I+ LLPK RQT+LFSATQ+ KVEDLAR+S T+PVYIDVD+GR +VTNE
Sbjct: 315 EQNFEEDLKKILNLLPKT-RQTSLFSATQSAKVEDLARVSL-TSPVYIDVDEGRKEVTNE 372
Query: 323 GLQQGYCVVPSAKRFILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHG 381
GL+QGYCVVPSA R + L +FLKR KK+MVFFS+C S KFH+EL RYI+ DC +I G
Sbjct: 373 GLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRG 432
Query: 382 KQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTA 441
Q KRT TF F KAE GILLCT+VAARGLD P VDWIVQYDPPD P +YIHRVGRTA
Sbjct: 433 GIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTA 492
Query: 442 RGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNK 501
RGEGA+G ALL L P+EL+F++YLKAAK+PV+E+EF++KKL +V+ +E L++ NY L +
Sbjct: 493 RGEGAKGKALLVLTPQELKFIQYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKE 552
Query: 502 SAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTR 561
SAK+AY++YI Y+SHSMKD+FNVH+L+L VA SF FS PPKV L ID +R K
Sbjct: 553 SAKEAYKTYISGYDSHSMKDVFNVHQLNLTEVATSFGFSDPPKVALKIDRGG--YRSKRE 610
Query: 562 KVEGSRNGFSESNPYGRQRDE 582
V + G P G+ + E
Sbjct: 611 PVNKFKRGRGGGRPGGKSKFE 631
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
Identities = 311/488 (63%), Positives = 399/488 (81%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F +L + ++T ++I++MGF+ MT IQA+++ PL+ GKD+LGAARTGSGKTLAFLIPA+E+
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + F PRNGTGVI+I PTRELA+Q + VA++L+KYH+QT G+VIGG++++ E ER+ K
Sbjct: 181 LVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEK 240
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
GVNLLVATPGRLLDHLQNTKGFI KNLKCL+IDEADRILE FEEEM QI+K +PK RQ
Sbjct: 241 GVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKT-RQ 299
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSATQT+KV+D+A++S +PVY+ VDD R T EGL+QGY V PS +RF+LLY+F
Sbjct: 300 TMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYTF 359
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403
LK+NLSKK++VF SSCN+VK+ +ELL YI + ++HG+QKQQKRT TF++F AEKGIL
Sbjct: 360 LKKNLSKKIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGIL 419
Query: 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLR 463
+CTDVAARGLDIP+VDWI+QYDPPD+PKEYIHRVGRTARG G +G ALLFL+P+EL FL+
Sbjct: 420 ICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLK 479
Query: 464 YLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIF 523
YLK AKVP+ EYEF + K+ANVQ LEK+V+ N+YL SA+DAY++YI AY SHS+KDIF
Sbjct: 480 YLKLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSARDAYKAYICAYASHSLKDIF 539
Query: 524 NVHRLDLQAVAASFCFSSPPKVNLTIDSSA-SKFRKKTRKVEGSRNGFSESNPYGRQRDE 582
+V+ LDLQ VA +F F PPKVNL ++SS + F+KK+ +++GF++ YG +
Sbjct: 540 DVNALDLQCVAKAFGFLDPPKVNLNVNSSGKADFQKKSN----NKSGFAQKQ-YGSKFPP 594
Query: 583 DDKRQFVR 590
D RQF R
Sbjct: 595 KDGRQFDR 602
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 1626 (577.4 bits), Expect = 3.7e-167, P = 3.7e-167
Identities = 307/484 (63%), Positives = 391/484 (80%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGLS+ T + I++MGF+ MT+IQ R +PPL+ G+DVLGAA+TGSGKTLAFLIPA+E+
Sbjct: 130 FTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 189
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L +F PRNGTGVIV+ PTRELA+Q VA++LL HSQT G+VIGG+ RR EAE++ K
Sbjct: 190 LSALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTK 249
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
GVNLL+ATPGRLLDHLQNT GF++KNLK LVIDEADRILE FE+EMRQI+K+LP +DRQ
Sbjct: 250 GVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQ 309
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSATQT KVEDLAR+S + P+YI+VD + T EGL+QGY + + KRF+LL+SF
Sbjct: 310 TMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSF 369
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403
LKRNL KK++VFFSSCN VK+H+ELL YI + D+HGKQKQQKRT TFF+FC A++G+L
Sbjct: 370 LKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGVL 429
Query: 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLR 463
+CTDVAARGLDIPAVDWI+Q+DPPD+ ++YIHRVGRTARG RG +L+FL P E+ FL+
Sbjct: 430 ICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVGFLK 489
Query: 464 YLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIF 523
YLK A+VPV E++F KK+ NVQS LEKL++ NYYLNKSAKD YRSY+ AY SHS++ +F
Sbjct: 490 YLKEARVPVVEFDFPAKKIVNVQSQLEKLISQNYYLNKSAKDGYRSYLQAYASHSLRSVF 549
Query: 524 NVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYG---RQR 580
+VH+LDL VA SF FS+PP++++ + SS S R K ++ +G R+ S+ P G +++
Sbjct: 550 DVHKLDLVKVAKSFGFSTPPRIDIQLGSSLS--RDKKQQQQGRRSYGSQ--PKGLKFKRK 605
Query: 581 DEDD 584
EDD
Sbjct: 606 HEDD 609
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 1624 (576.7 bits), Expect = 6.0e-167, P = 6.0e-167
Identities = 311/477 (65%), Positives = 384/477 (80%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F L LS++ +AI++MGF+ MT+IQ R++PPL+ G+DVLGAA+TGSGKTLAFLIP +E+
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
LY +F PRNGTGVI+I PTRELA+Q VAK+LLKYH QT G+VIGG+ RR EA+++VK
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK 210
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
GVNLLVATPGRLLDHLQNTKGF+++NL+ LVIDEADRILE FE+EMRQIMK+LP ++RQ
Sbjct: 211 GVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQ 270
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSATQT KVEDLAR+S + P+Y++VD G+ T EGL+QGY VV S KRF+LL+SF
Sbjct: 271 TLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSF 330
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403
LKRNL KKV+VF SSC SVK+ +ELL YI + D+HGKQKQQ+RT TFF+FC AEKGIL
Sbjct: 331 LKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGIL 390
Query: 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLR 463
LCT+VAARGLDIPAVDWIVQYDPPD+P++YIHRVGRTARG G +L+FL P EL FLR
Sbjct: 391 LCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLR 450
Query: 464 YLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIF 523
YLK AKV + E+EF K+ANVQS LEKLV+ NYYL +SAKD YRSY+ AY S+S+K IF
Sbjct: 451 YLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIF 510
Query: 524 NVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQR 580
++++LDL VA SF F+ PP VN+TI +S +K+ R +N + Y +QR
Sbjct: 511 DINKLDLAKVAKSFGFAHPPNVNITIGASGRTDKKERRAGYNKKN---HVDVYSKQR 564
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
Identities = 297/459 (64%), Positives = 377/459 (82%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F+ L LSQ T +AI+ MGF MT +QAR +PPL+ G+DVLGAA+TGSGKTLAFLIPA+EL
Sbjct: 44 FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L++ +F PRNGTG+IVI PTRELA+Q VA++L+++HSQT G+VIGG+ RR EAE+++K
Sbjct: 104 LHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMK 163
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
GVN+L+ATPGRLLDHLQNTKGF++KNLK L+IDEADRILE FE+EMRQI+K+LP +DRQ
Sbjct: 164 GVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQ 223
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
+ LFSATQT KVEDLAR+S + P++I+V T +GL+QGY V S KRF+LL+SF
Sbjct: 224 SMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSF 283
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403
LKRN KK++VF SSCNSVK+++ELL YI + ++HGKQKQQKRT TFF+FC AE+GIL
Sbjct: 284 LKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL 343
Query: 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLR 463
+CTDVAARGLDIPAVDWI+Q+DPPD+P++YIHRVGRTARG +G +L+FL P EL FLR
Sbjct: 344 ICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFLR 403
Query: 464 YLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIF 523
YLKA+KVP+ EYEF + K+ANVQS LEKL+ +NYYL+++AKD YRSY+ AY SHS+K ++
Sbjct: 404 YLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHSLKTVY 463
Query: 524 NVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRK 562
+ +LDL VA S+ F PPKVN+TI +S K RK
Sbjct: 464 QIDKLDLAKVAKSYGFPVPPKVNITIGASGKTPNTKRRK 502
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 298/477 (62%), Positives = 374/477 (78%)
Query: 103 SFDSL-GL-SQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
SF SL GL S++T + I DMGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIPA
Sbjct: 165 SFTSLAGLVSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPA 224
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
VEL+Y +F PRNGTGVI++ PTRELA+QT+ V K+L+ +H T GL++GGS R EA++
Sbjct: 225 VELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQK 284
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRILE FEEEM+QI+KLLPK+
Sbjct: 285 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 344
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQT LFSATQT+KVEDLA++S + P+Y+ VDD + T +GL+QGY V PS KRF+LL
Sbjct: 345 -RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLL 403
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
++FLK+N KK+MVFFSSC SVK+H ELL YI + IHGKQKQ KRTTTFF FC AE
Sbjct: 404 FTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAES 463
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPK--EYIHRVGRTARGEGARGNALLFLIPEE 458
GILLCTDVAARGLDIP VDWIVQYDPPD+PK EYIHRVGRTARG RG+ALL L PEE
Sbjct: 464 GILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIHRVGRTARGINGRGHALLILRPEE 523
Query: 459 LQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
L FLRYLK A+VP+ E+EF K++++QS LEKL+ NY+L+KSA++AY++YI AY+SHS
Sbjct: 524 LGFLRYLKQARVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKAYIRAYDSHS 583
Query: 519 MKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNP 575
+K I+NV LDL V+ SF F PP V+L ++S+ + +K G GF P
Sbjct: 584 LKQIYNVGNLDLNKVSLSFGFKVPPYVDLNVNSNQGRRLQK----RGGGGGFGYQKP 636
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
Identities = 297/473 (62%), Positives = 374/473 (79%)
Query: 103 SFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
SF SL +S++T + +++MGF MT+IQ + + PL+ G+DVL AA+TGSGKTLAFLIP+
Sbjct: 160 SFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPS 219
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+EL+Y +F PRNGTGVIV+ PTRELA+QT+ V K+L+ +H T GL++GGS R EA++
Sbjct: 220 IELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQK 279
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ GVN+LVATPGRLLDHLQNT GF++KNL+CL+IDEADRILE FEEE++QI+KLLPKK
Sbjct: 280 LANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKK 339
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQ+ LFSATQT+KVEDLAR+S + P+Y+ VDD + T EGL+QGY V PS KRF+LL
Sbjct: 340 -RQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLL 398
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
++FLK+N KK+MVFFSSC SVKFH ELL YI + IHGKQKQ KRTTTFF FC A+
Sbjct: 399 FTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADS 458
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
GILLCTDVAARGLDIP VDWIVQ+DPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 459 GILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELG 518
Query: 461 FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMK 520
FLR+LK AKVP+ E+EF K++++QS L+KL+ NYYL+KSA++AY+SY+ AY+SHS+K
Sbjct: 519 FLRFLKQAKVPLSEFEFSWTKISDIQSQLDKLIEKNYYLHKSAQEAYKSYVRAYDSHSLK 578
Query: 521 DIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSES 573
I+NV LDL VA SF F PP V+L + SS K K ++ G G+ +S
Sbjct: 579 QIYNVETLDLPKVAMSFGFKVPPFVDLNVHSS--KGVKLHKRGGGGGFGYQKS 629
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
Identities = 290/460 (63%), Positives = 372/460 (80%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSFDSL ++++T +AI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 181 TSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 240
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R EA+
Sbjct: 241 AVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 300
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 301 KLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 360
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 361 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLL 419
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KK+MVFFSSC SVK+H ELL YI + IHG+QKQ KRTTTFF FC A+
Sbjct: 420 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNAD 479
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 480 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 539
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ E+EF K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 540 GFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 599
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK 559
K IFNV+ L+L VA SF F PP V+L ++++ K RK+
Sbjct: 600 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNTNDGKVRKR 639
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
Identities = 290/460 (63%), Positives = 372/460 (80%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSFDSL ++++T +AI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 177 TSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R EA+
Sbjct: 237 AVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 296
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 297 KLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 356
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 357 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLL 415
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KK+MVFFSSC SVK+H ELL YI + IHG+QKQ KRTTTFF FC A+
Sbjct: 416 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNAD 475
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 476 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ E+EF K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 536 GFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 595
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK 559
K IFNV+ L+L VA SF F PP V+L ++++ K RK+
Sbjct: 596 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNTNDGKVRKR 635
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 1543 (548.2 bits), Expect = 2.3e-158, P = 2.3e-158
Identities = 290/460 (63%), Positives = 371/460 (80%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T +AI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 176 TSFASLSSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 235
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ YH T GL++GGS R EA+
Sbjct: 236 AVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQ 295
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 296 KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 355
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 356 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLL 414
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KK+MVFFSSC SVK+H ELL YI + IHG+QKQ KRTTTFF FC A+
Sbjct: 415 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNAD 474
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 475 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILHPEEL 534
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ E+EF K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 535 GFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 594
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK 559
K IFNV+ L+L VA SF F PP V+L ++S+ K +K+
Sbjct: 595 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKLKKR 634
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 300/492 (60%), Positives = 382/492 (77%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T RAI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 178 TSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 237
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R EA+
Sbjct: 238 AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 297
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 298 KLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 357
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 358 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLL 416
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KK+MVFFSSC SVK+H ELL YI + IHG+QKQ KRTTTFF FC A+
Sbjct: 417 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNAD 476
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 477 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 536
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ E+EF K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 537 GFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 596
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRK----------KTRKVEGSR-- 567
K IFNV+ L+L VA SF F PP V+L ++S+ K +K K +KVE SR
Sbjct: 597 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKVKKRGGGGGFGYQKAKKVEKSRIF 656
Query: 568 NGFSESNPYGRQ 579
S+ GRQ
Sbjct: 657 KHISKKPSDGRQ 668
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 300/492 (60%), Positives = 382/492 (77%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T RAI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 203 TSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 262
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R EA+
Sbjct: 263 AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 322
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 323 KLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 382
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 383 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLL 441
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KK+MVFFSSC SVK+H ELL YI + IHG+QKQ KRTTTFF FC A+
Sbjct: 442 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNAD 501
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 502 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 561
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ E+EF K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 562 GFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 621
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRK----------KTRKVEGSR-- 567
K IFNV+ L+L VA SF F PP V+L ++S+ K +K K +KVE SR
Sbjct: 622 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKVKKRGGGGGFGYQKAKKVEKSRIF 681
Query: 568 NGFSESNPYGRQ 579
S+ GRQ
Sbjct: 682 KHISKKPSDGRQ 693
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 300/492 (60%), Positives = 382/492 (77%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T RAI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 174 TSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 233
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R EA+
Sbjct: 234 AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 293
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 294 KLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 353
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 354 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLL 412
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KK+MVFFSSC SVK+H ELL YI + IHG+QKQ KRTTTFF FC A+
Sbjct: 413 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNAD 472
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 473 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 532
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ E+EF K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 533 GFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 592
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRK----------KTRKVEGSR-- 567
K IFNV+ L+L VA SF F PP V+L ++S+ K +K K +KVE SR
Sbjct: 593 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKVKKRGGGGGFGYQKAKKVEKSRIF 652
Query: 568 NGFSESNPYGRQ 579
S+ GRQ
Sbjct: 653 KHISKKPSDGRQ 664
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
Identities = 286/457 (62%), Positives = 371/457 (81%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F++ S+ T +AI++MGF MT++QA+ +PPL+ G+DVLGAA+TGSGKTLAFLIPA+EL
Sbjct: 110 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 169
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
LY+ + PRNGT VI+I PTRELA+Q VA++L+++HSQT G+VIGG+ RR EA ++ K
Sbjct: 170 LYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAK 229
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
GVNLLVATPGRLLDHL+NT+ F++ NLK LVIDEADRILE FE+EM+QI+K+LP ++RQ
Sbjct: 230 GVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQ 288
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
+ LFSATQT KVEDLAR+S + P+YI+V + T +GL+QGY V S KRF+LL+SF
Sbjct: 289 SMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSF 348
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403
LKRN+ KK++VF SSCNSVKF+SELL YI + D+HGKQKQQKRT TFF+FC A++GIL
Sbjct: 349 LKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGIL 408
Query: 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLR 463
+CTDVAARGLDIPAVDWIVQ+DPPD+P++YIHRVGRTARG +G +L+FL P EL FLR
Sbjct: 409 VCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLR 468
Query: 464 YLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIF 523
YLKAAKVP+ EYEF K+AN+QS L KL+ NY LN+SAKD YR+Y+ AY SH +K ++
Sbjct: 469 YLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLKTVY 528
Query: 524 NVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKT 560
+ +LDL+ V+ASF P+VNL+I + +K +K++
Sbjct: 529 QIDKLDLKKVSASFGLDQVPRVNLSIGGTKTKKQKRS 565
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
Identities = 286/457 (62%), Positives = 371/457 (81%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F++ S+ T +AI++MGF MT++QA+ +PPL+ G+DVLGAA+TGSGKTLAFLIPA+EL
Sbjct: 110 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 169
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
LY+ + PRNGT VI+I PTRELA+Q VA++L+++HSQT G+VIGG+ RR EA ++ K
Sbjct: 170 LYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAK 229
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
GVNLLVATPGRLLDHL+NT+ F++ NLK LVIDEADRILE FE+EM+QI+K+LP ++RQ
Sbjct: 230 GVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQ 288
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
+ LFSATQT KVEDLAR+S + P+YI+V + T +GL+QGY V S KRF+LL+SF
Sbjct: 289 SMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSF 348
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403
LKRN+ KK++VF SSCNSVKF+SELL YI + D+HGKQKQQKRT TFF+FC A++GIL
Sbjct: 349 LKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGIL 408
Query: 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLR 463
+CTDVAARGLDIPAVDWIVQ+DPPD+P++YIHRVGRTARG +G +L+FL P EL FLR
Sbjct: 409 VCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLR 468
Query: 464 YLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIF 523
YLKAAKVP+ EYEF K+AN+QS L KL+ NY LN+SAKD YR+Y+ AY SH +K ++
Sbjct: 469 YLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLKTVY 528
Query: 524 NVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKT 560
+ +LDL+ V+ASF P+VNL+I + +K +K++
Sbjct: 529 QIDKLDLKKVSASFGLDQVPRVNLSIGGTKTKKQKRS 565
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
Identities = 292/478 (61%), Positives = 376/478 (78%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T +AI++MGF+ MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 181 TSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 240
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+EL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R E +
Sbjct: 241 VIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQ 300
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 301 KLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPA 360
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 361 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLL 419
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KKVMVFFSSC SVK+H ELL YI + IHGKQKQ KRTTTFF FC A+
Sbjct: 420 LFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNAD 479
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 480 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 539
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ +++F K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 540 GFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 599
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRK----------KTRKVEGSR 567
K IFNV+ L+L VA SF F PP V+L + S K +K KT+KVE S+
Sbjct: 600 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKLKKRGGGGGFGYQKTKKVEKSK 657
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
Identities = 292/478 (61%), Positives = 376/478 (78%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T +AI++MGF+ MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 169 TSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 228
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+EL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R E +
Sbjct: 229 VIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQ 288
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 289 KLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPA 348
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 349 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLL 407
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KKVMVFFSSC SVK+H ELL YI + IHGKQKQ KRTTTFF FC A+
Sbjct: 408 LFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNAD 467
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 468 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 527
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ +++F K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 528 GFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 587
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRK----------KTRKVEGSR 567
K IFNV+ L+L VA SF F PP V+L + S K +K KT+KVE S+
Sbjct: 588 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKLKKRGGGGGFGYQKTKKVEKSK 645
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
Identities = 292/478 (61%), Positives = 376/478 (78%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T +AI++MGF+ MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 167 TSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 226
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+EL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R E +
Sbjct: 227 VIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQ 286
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 287 KLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPA 346
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 347 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLL 405
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KKVMVFFSSC SVK+H ELL YI + IHGKQKQ KRTTTFF FC A+
Sbjct: 406 LFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNAD 465
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
GILLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 466 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 525
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ +++F K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 526 GFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 585
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRK----------KTRKVEGSR 567
K IFNV+ L+L VA SF F PP V+L + S K +K KT+KVE S+
Sbjct: 586 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKLKKRGGGGGFGYQKTKKVEKSK 643
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
Identities = 294/478 (61%), Positives = 377/478 (78%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T +AI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R EA+
Sbjct: 237 AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 296
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 297 KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 356
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+ RQT LFSATQT+KVEDLAR+S + P+Y+ VDD + T +GL+QGY V PS KRF+L
Sbjct: 357 R-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLL 415
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L++FLK+N KK+MVFFSSC SVK+H ELL YI + IHGKQKQ KRTTTFF FC A+
Sbjct: 416 LFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNAD 475
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
G LLCTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL
Sbjct: 476 SGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
FLRYLK +KVP+ E++F K++++QS LEKL+ NY+L+KSA++AY+SYI AY+SHS+
Sbjct: 536 GFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 595
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRK----------KTRKVEGSR 567
K IFNV+ L+L VA SF F PP V+L ++S+ K +K KT+KVE S+
Sbjct: 596 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNEGKQKKRGGGGGFGYQKTKKVEKSK 653
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 297/498 (59%), Positives = 385/498 (77%)
Query: 103 SFDSL--GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
SF SL +S+ T RAI++MGF MT+IQ++++ PL+ G+D++GAA+TGSGKTLAFLIPA
Sbjct: 186 SFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 245
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
VEL+ +F PRNGTGVI+I PTREL++QT V K+L+ +H T GLV+GGS R+ E+E+
Sbjct: 246 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 305
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ KG+N+LVATPGRLLDHLQN+ F+YKNL+CL+IDE DRILE FEEE++QI+ LLPK+
Sbjct: 306 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 365
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQT LFSATQT ++E L++L+ ++ P+Y+ V D + T +GL+QGY V PS KR ++L
Sbjct: 366 -RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVL 424
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
++FLK+N KKVMVFFSSC SVK+H EL YI + IHGKQKQ KRTTTFF FC AE
Sbjct: 425 FTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAES 484
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
GILLCTDVAARGLDIP VDWIVQYDPPD+P+EYIHRVGRTARG G G+ALL + PEEL
Sbjct: 485 GILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELG 544
Query: 461 FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMK 520
FLRYLKAAKVP+ E+EF +K+A++Q LEKL+A NY+LN+SAK+A++SY+ AY+SH +K
Sbjct: 545 FLRYLKAAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLK 604
Query: 521 DIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYG--- 577
IFNV+ LDLQAVA SF F PP V+L + A+K + ++V G GF + G
Sbjct: 605 QIFNVNTLDLQAVAKSFGFLVPPVVDLKV--GAAKRERPEKRVGGGGFGFYKKMNEGSAS 662
Query: 578 RQR-----DEDDKRQFVR 590
+QR + D ++F+R
Sbjct: 663 KQRHFKQVNRDQAKKFMR 680
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 283/464 (60%), Positives = 362/464 (78%)
Query: 99 MSTTSFDSL-G-LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
++ T+F SL G ++ + +A+Q +GF MT+IQA+++ PL+ GKDVL +A+TGSGKTLAF
Sbjct: 63 LTKTTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAF 122
Query: 157 LIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216
L+PA+ELL+ + NGTGVI++ PTREL++QT+ V +LL+ + T GLV+GGS R
Sbjct: 123 LLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSA 182
Query: 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276
E +++ KGV++LVATPGRLLDHLQNT F+ +N+KCL+IDEADRIL+ FE EM+Q+++
Sbjct: 183 EKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRH 242
Query: 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336
LPK+ RQ+ LFSAT + KV++L +L+ + PV + V + + T EGLQQGY V PS KR
Sbjct: 243 LPKQ-RQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKR 301
Query: 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
+LL++FLK+N +KKVMVFFSSCNSVKFH ELL YI + C IHGKQKQQKRTTTFF FC
Sbjct: 302 LLLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFC 361
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+AE GILLCTDVAARGLDIPAVDWIVQYDP DEP+EYIHRVGRTARG G ALL L P
Sbjct: 362 QAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRP 421
Query: 457 EELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNS 516
EEL FLRYLKAAKV + E+EF K+AN+QS LE L++ NYYLNKSAK+AY+ Y+ AY+S
Sbjct: 422 EELGFLRYLKAAKVTLNEFEFSWSKVANIQSQLENLISKNYYLNKSAKEAYKCYLRAYDS 481
Query: 517 HSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSAS-KFRKK 559
HS+KDIF+V +DL AV+ SF FS PP V+L I + + R K
Sbjct: 482 HSLKDIFDVTNMDLTAVSKSFGFSVPPFVDLPISNKPKVEIRSK 525
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
Identities = 244/461 (52%), Positives = 347/461 (75%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S F+ L + + ++++ F +T+IQA+ +P + GKD+LGAA+TGSGKTLAFL+P
Sbjct: 146 SELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVP 205
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
++ +LYN +F P+NGTGV++I PTREL +Q + V KDL KY QT G++IGG +R E +
Sbjct: 206 SINILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKK 265
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ + G+N+L+ATPGRLLDH+QNTK FIYKNL CL+IDEADR+L+ FEEE+ I+K LPK
Sbjct: 266 KFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPK 325
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKV-TNEGLQQGYCVVPSAKRFI 338
K RQTALFSATQT KVE L RLS Q P++I+V TK+ T E LQQGY +V KRF+
Sbjct: 326 K-RQTALFSATQTTKVESLIRLSLQK-PIFIEVT---TKIATVERLQQGYALVDEDKRFL 380
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
LL++FLK+N+SKK+MVFF++C SV+F+++LL YI + + IHGK+KQ KR +F DF A
Sbjct: 381 LLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAA 440
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ ILLCT+VAARGLDIP V++I+QYDPPD+ KEYIHRVGRT RG+ + G+A++FL+ E
Sbjct: 441 KCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHE 500
Query: 459 LQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
L+FL YLK +P+ ++ +D KL N+QSH++ +V N++L+K A++A++SY+ Y +++
Sbjct: 501 LKFLNYLKFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYLNGYITYA 560
Query: 519 MKDIFNVHRLDLQAVAASFCFSSPPKV--NLTIDSSASKFR 557
+KD+F+V+ L+L + +F PPKV NL ++ KF+
Sbjct: 561 LKDVFDVNNLNLLLTSKNFGLEVPPKVDLNLKLNVKKKKFK 601
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
Identities = 244/461 (52%), Positives = 347/461 (75%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S F+ L + + ++++ F +T+IQA+ +P + GKD+LGAA+TGSGKTLAFL+P
Sbjct: 146 SELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVP 205
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
++ +LYN +F P+NGTGV++I PTREL +Q + V KDL KY QT G++IGG +R E +
Sbjct: 206 SINILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKK 265
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ + G+N+L+ATPGRLLDH+QNTK FIYKNL CL+IDEADR+L+ FEEE+ I+K LPK
Sbjct: 266 KFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPK 325
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKV-TNEGLQQGYCVVPSAKRFI 338
K RQTALFSATQT KVE L RLS Q P++I+V TK+ T E LQQGY +V KRF+
Sbjct: 326 K-RQTALFSATQTTKVESLIRLSLQK-PIFIEVT---TKIATVERLQQGYALVDEDKRFL 380
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
LL++FLK+N+SKK+MVFF++C SV+F+++LL YI + + IHGK+KQ KR +F DF A
Sbjct: 381 LLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAA 440
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ ILLCT+VAARGLDIP V++I+QYDPPD+ KEYIHRVGRT RG+ + G+A++FL+ E
Sbjct: 441 KCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHE 500
Query: 459 LQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
L+FL YLK +P+ ++ +D KL N+QSH++ +V N++L+K A++A++SY+ Y +++
Sbjct: 501 LKFLNYLKFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYLNGYITYA 560
Query: 519 MKDIFNVHRLDLQAVAASFCFSSPPKV--NLTIDSSASKFR 557
+KD+F+V+ L+L + +F PPKV NL ++ KF+
Sbjct: 561 LKDVFDVNNLNLLLTSKNFGLEVPPKVDLNLKLNVKKKKFK 601
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 894 (319.8 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
Identities = 192/447 (42%), Positives = 279/447 (62%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 129 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F NL+ LV+DEADRIL+ F + M I++ LPKK
Sbjct: 189 -NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKK- 246
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQT LFSATQTK V+DLARLS + P Y+ V + T L+Q Y + ++ +L+
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKD-PEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 305
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAE 399
SFL+ +L KK +VFFSSC V++ + ++ + +HG+Q+Q +R + +F +
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 365
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L TD+AARGLD PAV+W++Q+D P++ YIHR GRTAR + G ALL L+P E
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYK-EDGEALLILLPSEE 424
Query: 460 Q-FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
Q ++ L KVPVKE + + +KL +VQ LE +A + L + A+ + SYI +
Sbjct: 425 QGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMK 484
Query: 519 MKDIFNVHRLDLQAVAASFCFSSPPKV 545
K++FNV +L + A S + P++
Sbjct: 485 DKEVFNVSKLPITEYALSLGLAVAPRI 511
Score = 40 (19.1 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKV 563
+D+F + + +A++ S K LT + A K K++ KV
Sbjct: 644 RDVFGLDLKENEALSKKEPSKSSVKKKLTKVAEAKKVMKRSFKV 687
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 201/494 (40%), Positives = 297/494 (60%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 129 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F NL+ LV+DEADRIL+ F + M I++ LPKK
Sbjct: 189 -NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKK- 246
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQT LFSATQTK V+DLARLS + P Y+ V + T L+Q Y + ++ +L+
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKD-PEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 305
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAE 399
SFL+ +L+KK +VFFSSC V++ + ++ + +HG+Q+Q +R + +F +
Sbjct: 306 SFLRSHLTKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 365
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L TD+AARGLD PAV+W++Q+D P++ YIHR GRTAR + G ALL L+P E
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYK-EDGEALLILLPSEE 424
Query: 460 Q-FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
Q ++ L KVPVKE + + +KL +VQ LE +A + L + A+ + SYI +
Sbjct: 425 QGMVQQLLQKKVPVKEIKINPEKLIDVQKRLESFLAQDQDLKERAQRCFVSYIRSVYLMK 484
Query: 519 MKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSES-NPYG 577
K++F+V++L + A S + P++ K K+ K G +N +E+ P
Sbjct: 485 DKEVFDVNKLPITEYALSLGLAVAPRIRFL-----QKMEKQPNKELG-KNQVTEAIQPRA 538
Query: 578 RQRDEDDKRQFVRY 591
D+ +F Y
Sbjct: 539 PSLTSDEVEEFRAY 552
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 191/446 (42%), Positives = 279/446 (62%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 129 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F +L+ LV+DEADRIL+ F + M +++ LPKK
Sbjct: 189 -NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK- 246
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQT LFSATQTK V+DLARLS + P Y+ V + T L+Q Y V ++ +LY
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKN-PEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAE 399
SFL+ +L KK +VFFSSC V++ + ++ V +HG+Q+Q +R + +F +
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKR 365
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L TD+AARGLD PAV+W++Q+D P++ YIHR GRTAR + G ALL L+P E
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYK-EDGEALLILLPSEK 424
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
++ L KVPVKE + + +KL +VQ LE ++A + L + A+ + SY+ +
Sbjct: 425 AMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKD 484
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKV 545
K++F+V +L + A S + P+V
Sbjct: 485 KEVFDVSKLPIPEYALSLGLAVAPRV 510
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 191/446 (42%), Positives = 279/446 (62%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 129 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F +L+ LV+DEADRIL+ F + M +++ LPKK
Sbjct: 189 -NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK- 246
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQT LFSATQTK V+DLARLS + P Y+ V + T L+Q Y V ++ +LY
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKN-PEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAE 399
SFL+ +L KK +VFFSSC V++ + ++ V +HG+Q+Q +R + +F +
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKR 365
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L TD+AARGLD PAV+W++Q+D P++ YIHR GRTAR + G ALL L+P E
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYK-EDGEALLILLPSEK 424
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
++ L KVPVKE + + +KL +VQ LE ++A + L + A+ + SY+ +
Sbjct: 425 AMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKD 484
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKV 545
K++F+V +L + A S + P+V
Sbjct: 485 KEVFDVSKLPIPEYALSLGLAVAPRV 510
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 196/492 (39%), Positives = 291/492 (59%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S T F L +SQ T +A+ + F +T IQ ++P + G+D+LGAA+TGSGKTL+F++P
Sbjct: 139 SATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILP 198
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+E L+ ++ +G G IV+ PTRELAIQ V K + KYH+ + GL+IGG + E +
Sbjct: 199 ILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKD 258
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+I +N+L+ATPGRLL H+ T GF NLK LV+DEADRIL+ F + + I++ LP+
Sbjct: 259 KI-NAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPR 317
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+RQT LFSATQTK + DLARLS Q P YI V + T + L Q CV+P + +
Sbjct: 318 -ERQTLLFSATQTKSIRDLARLSLQE-PEYISVYEKDITTTPQNLTQTLCVIPLEMKLNM 375
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCK 397
L+SF+K +L+ K++VFF+SC V+F E + + F +HGK KQ R F DFCK
Sbjct: 376 LFSFIKTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFCK 435
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ G L TD+AARGLD PAV+W++Q D PD+ + YIHRVGRTAR + A G ++ L+P
Sbjct: 436 KKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARND-APGQSITILLPS 494
Query: 458 ELQ-FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNS 516
E + ++ K+ + E + +KL ++ S L ++ L A+ ++ SY+ +
Sbjct: 495 EKDGMVNLMEKQKMKFEILEPNPEKLVSIDSKLSSFLSEKTDLKYLAQKSFVSYLRSVYR 554
Query: 517 HSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPY 576
S K+IF + L++ + S P + S+ SK K+ V + +
Sbjct: 555 QSNKEIFKIQELNINEFSKSLGLLGTPNIQFGKASADSK--NKSFVVSNIQKQLKDKKSK 612
Query: 577 GRQ----RDEDD 584
G + D+DD
Sbjct: 613 GEKDIDSSDDDD 624
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 195/447 (43%), Positives = 279/447 (62%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 129 EALYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F NL+ LV+DEADRIL+ F + M I++ LPKK
Sbjct: 189 -NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKK- 246
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQT LFSATQTK V+DLARLS + P Y+ V + T L+Q Y V ++ +LY
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKN-PEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAE 399
SFL+ +L KK +VFFSSC V++ + ++ V +HG+Q+Q +R + +F +
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKR 365
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP-EE 458
+L TD+AARGLD PAV+W++Q+D P++ YIHR GRTAR + G ALL L+P EE
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYK-EDGEALLILLPSEE 424
Query: 459 LQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
++ L KVPVKE + + +KL +VQ LE +A + L + A+ + SYI +
Sbjct: 425 KGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFISYIRSVYLMK 484
Query: 519 MKDIFNVHRLDLQAVAASFCFSSPPKV 545
K+IF+V +L + A S + P++
Sbjct: 485 DKEIFDVSKLPISDYALSLGLAVAPRI 511
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 196/447 (43%), Positives = 278/447 (62%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 129 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F NL+ LV+DEADRIL+ F + M I++ LPKK
Sbjct: 189 -NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKK- 246
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQT LFSATQTK V+DLARLS + P YI V + T L+Q Y V ++ +LY
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKN-PEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAE 399
SFL+ +L KK +VFFSSC V++ + ++ + +HG+Q+Q +R + +F +
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 365
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP-EE 458
+L TD+AARGLD PAV+W++Q+D P++ YIHR GRTAR + G ALL L+P EE
Sbjct: 366 SAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYK-EDGEALLILLPSEE 424
Query: 459 LQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
++ L KVPVKE + + +KL +VQ LE +A + L + A+ + SYI +
Sbjct: 425 KGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDKDLKERAQRCFVSYIRSVYLMK 484
Query: 519 MKDIFNVHRLDLQAVAASFCFSSPPKV 545
K+IF+V L + A S + P+V
Sbjct: 485 NKEIFDVSTLPVPEYALSLGLAVAPRV 511
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 197/486 (40%), Positives = 290/486 (59%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAF++PA+EL
Sbjct: 75 FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 134
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + E+ERI
Sbjct: 135 LYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERI-H 193
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
+N+L+ TPGRLL H+ T F +L+ L++DEADRIL+ F + M I++ LPKK RQ
Sbjct: 194 HINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKK-RQ 252
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSATQTK V+DLARLS + P Y+ V + T L Q Y V + +LYSF
Sbjct: 253 TLLFSATQTKSVKDLARLSLKD-PEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYSF 311
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L+ +L KK +VFF+SC V++ + +Q + +HGKQ+Q KR + F + +
Sbjct: 312 LRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAA 371
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR-GEGARGNALLFLIP-EEL 459
+L TD+AARGLD PAV+W++Q+D P++ YIHRVGRTAR EG G ALL L+P EE
Sbjct: 372 VLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEG--GEALLVLLPSEEK 429
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
+ L KVPV E + + +K+ ++Q ++ +A + L + A+ + SY+ +
Sbjct: 430 GMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYLMKN 489
Query: 520 KDIFNVHRLDLQAVAASFCFSSPP------KVNLTIDSSASKFRKKTRKVEGSRNGFSES 573
K++F+V +L L A S + P KV + + R + E ++N S
Sbjct: 490 KEVFDVFKLPLAEYALSLGLAMAPRVRFLQKVQKQLSVKETSERNPLKDTEQNKNTISSL 549
Query: 574 NPYGRQ 579
N G +
Sbjct: 550 NKEGME 555
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 197/486 (40%), Positives = 290/486 (59%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAF++PA+EL
Sbjct: 75 FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 134
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + E+ERI
Sbjct: 135 LYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERI-H 193
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
+N+L+ TPGRLL H+ T F +L+ L++DEADRIL+ F + M I++ LPKK RQ
Sbjct: 194 HINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKK-RQ 252
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSATQTK V+DLARLS + P Y+ V + T L Q Y V + +LYSF
Sbjct: 253 TLLFSATQTKSVKDLARLSLKD-PEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYSF 311
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L+ +L KK +VFF+SC V++ + +Q + +HGKQ+Q KR + F + +
Sbjct: 312 LRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAA 371
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR-GEGARGNALLFLIP-EEL 459
+L TD+AARGLD PAV+W++Q+D P++ YIHRVGRTAR EG G ALL L+P EE
Sbjct: 372 VLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEG--GEALLVLLPSEEK 429
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
+ L KVPV E + + +K+ ++Q ++ +A + L + A+ + SY+ +
Sbjct: 430 GMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYLMKN 489
Query: 520 KDIFNVHRLDLQAVAASFCFSSPP------KVNLTIDSSASKFRKKTRKVEGSRNGFSES 573
K++F+V +L L A S + P KV + + R + E ++N S
Sbjct: 490 KEVFDVFKLPLAEYALSLGLAMAPRVRFLQKVQKQLSVKETSERNPLKDTEQNKNTISSL 549
Query: 574 NPYGRQ 579
N G +
Sbjct: 550 NKEGME 555
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 201/489 (41%), Positives = 290/489 (59%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF L +S+ T + F+ +T IQ+RA+ + G+DVLGAA+TGSGKTLAFL+P +E
Sbjct: 49 SFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILE 108
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
LY Q++ +G G ++I PTRELAIQ V + + +YH+ + GLVIGG + + E ER+
Sbjct: 109 NLYRKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLG 168
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+ +N+LV TPGR+L HL T F NL+ LV+DEADRI++ F++ + I+ LP +R
Sbjct: 169 R-MNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPP-ER 226
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
QT LFSATQTKKV DLARLS Q P Y+ V + + T LQQ Y V P ++ L+S
Sbjct: 227 QTLLFSATQTKKVSDLARLSLQD-PEYVAVHEAASSATPSKLQQHYVVTPLPQKLDTLWS 285
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAEK 400
F++ NL K +VF SS V+F E R++Q + +HG+QKQ R F +A+
Sbjct: 286 FIRSNLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQAQH 345
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP-EEL 459
+L TDVAARGLD PAVDW++Q D P++ YIHRVGRTAR E G A+LFL P EE
Sbjct: 346 AVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYE-RDGRAVLFLDPSEEK 404
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
LR L+ +V V+ K ++++ L+ + + L + A+ SY+ +
Sbjct: 405 GMLRRLEQKRVTVERINVRANKQQSIKNQLQNMCFKDPELKYLGQKAFISYVKSVYIQKD 464
Query: 520 KDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK-TRKVEGSRNGFSESNPYGR 578
K+ FN+ L L AAS P++ I +K RK +R +G ES+ G
Sbjct: 465 KETFNLKELKLDDFAASLGLPGAPRIKF-IKGDDTKERKNASRATAYLTSGDEESDEEGG 523
Query: 579 QRDEDDKRQ 587
++ + +++
Sbjct: 524 KKKQPKEKE 532
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 183/444 (41%), Positives = 266/444 (59%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F L L+Q T A+++ F +T+IQ + +P + G+D+LGAA+TGSGKTLAF++P +E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
LY ++ +G G +VI PTRELAIQT + + HS + GL+IGG+ + E ER+ +
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR 160
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
+N+LV TPGRLL H+ F L+ L++DEADRIL+ F + I+ LP RQ
Sbjct: 161 -MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVH-RQ 218
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSATQTK V+DLARLS Q P +I V + T T L Q Y VP ++ +L+ F
Sbjct: 219 TMLFSATQTKSVKDLARLSLQN-PDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGF 277
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
++ +L K +VF SSC V+F E R ++ + +HGKQKQ RT F +
Sbjct: 278 IRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHV 337
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L CTD+ ARGLD PAVDW++Q D P++ YIHRVGRTAR + GNALL L+P E F
Sbjct: 338 VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRS-GNALLLLLPSEEAF 396
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ L++ K+ V+ K ++++ L+ L + + + A+ SY+ + KD
Sbjct: 397 LKRLESKKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLRSIYLQKDKD 456
Query: 522 IFNVHRLDLQAVAASFCFSSPPKV 545
+F + +L ++A A S PK+
Sbjct: 457 VFQLDKLPVEAFADSLGLPGTPKI 480
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 193/494 (39%), Positives = 285/494 (57%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F L LS+ T + ++D F+ +T IQARA+P + G+D+LGAA+TGSGKTLAFL+P +E
Sbjct: 50 AFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLE 109
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
LY Q+ G +V+ PTRELA+QT V + + ++H + GLVIGG + R EAE +
Sbjct: 110 KLYREQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVREEAEALS 169
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+ +N+L+ TPGR+L HL T GF NL+ LV+DEADRI++ F+ ++ +++ LP R
Sbjct: 170 R-MNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTT-R 227
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
QT LFSATQ+KKV DLARLS + P Y+ V T T LQQ Y V P ++ L+
Sbjct: 228 QTLLFSATQSKKVSDLARLSLKD-PEYVSVHAEATTATPSTLQQHYIVTPLPEKLDTLWG 286
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAEK 400
F+K NL K++VF SS V+F E R +Q + +HG+QKQ R F ++
Sbjct: 287 FIKANLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVTKRFDSSKH 346
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP-EEL 459
L TDV ARG+D VDW+VQ D P++ +YIHRVGRTAR E G A++FL P EE
Sbjct: 347 ACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYE-REGKAVIFLDPSEEA 405
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519
L+ L+ KVP+ + K +++ L+ + ++ + A+ A+ SY A + +
Sbjct: 406 GMLKRLERKKVPITKVTAKDSKKKSIRDELQSICWKSHDVKYLAQKAFISYARAVHRATE 465
Query: 520 KD---------IFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKV--EGSRN 568
+D +F +LDL+ A S + P++ + + R GS +
Sbjct: 466 RDEKHNENSDQVFKFDKLDLEGFAKSMGLAGAPQIKFQKGEDVKRMKNAPRAPLSSGSED 525
Query: 569 GFSESNPYGRQRDE 582
+ P R++DE
Sbjct: 526 ESGDDKPRRRKKDE 539
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 192/489 (39%), Positives = 285/489 (58%)
Query: 85 NVKKSXXXXXXXXIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLG 144
N+KK F LS+ T + + + ++ T+IQ + + + G+DVLG
Sbjct: 53 NIKKLVDKYSEINPKEAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLG 112
Query: 145 AARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT 204
AA+TGSGKTLAFLIP +E LY Q+ +G G ++I PTRELA QT V + + K H +
Sbjct: 113 AAKTGSGKTLAFLIPVLECLYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFS 172
Query: 205 VGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA 264
GLVIGG + E+E+I + N+++ TPGRLL H+ T F +L LV+DEADRIL+
Sbjct: 173 AGLVIGGKDLKDESEKIHR-TNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDM 231
Query: 265 NFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGL 324
F + + I++ LPK RQT LFSATQT+ V+DLARLS + P Y+ V + T L
Sbjct: 232 GFADTLNAIVENLPKS-RQTLLFSATQTRSVKDLARLSLKD-PEYVWVHEQAKFSTPATL 289
Query: 325 QQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGK 382
+Q Y V ++ +LYSFL+ +L KK++VFF+ C V++ + ++ + +HGK
Sbjct: 290 EQNYVVCELHQKVNMLYSFLRSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGK 349
Query: 383 QKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
Q+Q KR + DF + +L TD+AARGLD PAV+W++Q+D P++ YIHRVGRTAR
Sbjct: 350 QQQMKRVEVYNDFVRKTSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTAR 409
Query: 443 -GEGARGNALLFLIP-EELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLN 500
EG G ALL L+P EE + L+ KVP+ + + + +KL +VQ LE +A
Sbjct: 410 YKEG--GEALLVLLPSEEKGMISQLQEKKVPINKIQVNPEKLMSVQQKLEAFLAQEKEQK 467
Query: 501 KSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKT 560
+ A+ + SY+ + KD+F+V +L L A S + P+V + A + R+
Sbjct: 468 ERAQRCFVSYLRSVYLMKNKDVFDVLQLKLPEYAMSLGLAVAPRVRFLL--KAQQQRRTA 525
Query: 561 RKVEGSRNG 569
+ + S G
Sbjct: 526 AQDDSSTAG 534
>TAIR|locus:2160225 [details] [associations]
symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
Length = 739
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 188/451 (41%), Positives = 274/451 (60%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F L +S T R ++D + MT +Q+ A+P + G+D+LGAARTGSGKTLAF+IP +E
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG---EAER 220
L+ +++P +G G I+I PTRELA QT V + K+H + GL+IGG R G E ER
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGG--REGVDVEKER 190
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ + +N+LV PGRLL H+ T F L+ L++DEADR+L++ F+ ++ I+ LPK
Sbjct: 191 VHE-MNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKH 249
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQT LFSATQTKKV+DLARLS + P YI V T L Q +VP K+ +L
Sbjct: 250 -RQTLLFSATQTKKVKDLARLSLRD-PEYISVHAEAVTATPTSLMQTVMIVPVEKKLDML 307
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKA 398
+SF+K +L+ +++VF S+ VKF E ++ + +HGK Q+KR + F +
Sbjct: 308 WSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIER 367
Query: 399 EKGILLCTDVAARGLDIP-AVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ +L CTDV ARGLD AVDW+VQ D P++ YIHRVGRTAR +G +LLFL P
Sbjct: 368 QS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFY-TQGKSLLFLTPS 425
Query: 458 ELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH 517
E + + L+ AKVP+K + + +KL V L L+ L A+ A+ +Y+ + +
Sbjct: 426 EEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKR 485
Query: 518 SMKDIFNVHRLDLQAVAASFCFSSPPKVNLT 548
K+IF+V +L ++ +AS P++ T
Sbjct: 486 RDKEIFDVSKLSIENFSASLGLPMTPRIRFT 516
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 177/468 (37%), Positives = 270/468 (57%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S + F L ++++T + +++ F +T IQ + +P + G+D++G ARTGSGKTLAFLIP
Sbjct: 46 SVSQFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIP 105
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+E L + +G +++ PTRELA+Q V + KY++ + GLV GG + E E
Sbjct: 106 VIESLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKE 165
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
R+ + +N+LV TPGR+ HL G NL+ LV+DEADR L+ F++++ I+ LP
Sbjct: 166 RVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPT 224
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVD-DGRTKVTNEGLQQGYCVVPSAKRFI 338
RQT LFSATQ++ V DLARLS T P I V D T E L+Q Y VP ++
Sbjct: 225 T-RQTLLFSATQSESVNDLARLSL-TNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLD 282
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFC 396
+L+SF+K +L K++VFFSS V++ E R +Q + ++G+ KQ R T F
Sbjct: 283 VLWSFIKSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFS 342
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+A+ L TD+ ARGLD PA+DW+VQ D P++ Y+HRVGR+AR G +G +LL L+P
Sbjct: 343 QAQHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARF-GRKGKSLLMLLP 401
Query: 457 -EELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYN 515
EE L+ LK K+ K QK +++ L+ L + + + A+ +Y + +
Sbjct: 402 SEEEGMLKRLKIHKIEPKLMNIKQKSKKSIRPQLQSLCFKDPVMKNLGQRAFIAYFKSVH 461
Query: 516 SHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKV 563
KD+F V L ++ AAS PK+ + S + + +RK+
Sbjct: 462 IQKDKDVFKVEELPAESYAASLGLPGAPKIKIKGGESNKEKKNASRKL 509
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
Identities = 191/498 (38%), Positives = 283/498 (56%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F L +S T + +++ F +T+IQA ++P + G DVL AA+TGSGKTLAFL+P +E
Sbjct: 43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
LY ++ +G G ++I PTRELA+Q + V + + S + GLVIGG + E ERI +
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
+N+L+ TPGR+L HL G NL+ LV+DEADR L+ F++ + I+ L RQ
Sbjct: 163 -INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTL-SPSRQ 220
Query: 284 TALFSATQTKKVEDLARLS---FQTTPVYIDVDDG---RTKVTNEGLQQGYCVVPSAKRF 337
T LFSATQ++ V DLARLS ++T + DV DG + T E LQQ Y VP A +
Sbjct: 221 TLLFSATQSQSVADLARLSLTDYKTVGTH-DVMDGSVNKEASTPETLQQFYIEVPLADKL 279
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDF 395
+L+SF+K +L K++VF SS V F E R +Q + +HG+QKQ+ RT T F
Sbjct: 280 DILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKF 339
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
+A++ L TDV ARG+D PAVDW+VQ D P++ YIHRVGR AR G +G +L+ L
Sbjct: 340 NRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCAR-YGKKGKSLIMLT 398
Query: 456 PEELQ-FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAY 514
P+E + FL+ L A K+ + Q K +++ L+ L+ + L + A+ SY+ +
Sbjct: 399 PQEQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQLQSLLFKDPELKYLGQKAFISYVRSI 458
Query: 515 NSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGF-SES 573
K +F L + A S PK+ + + + K RK + F S++
Sbjct: 459 YVQKDKQVFKFDELPTEEFAYSLGLPGAPKIKMKGMKTIEQ--AKERKNAPRQLAFLSKA 516
Query: 574 NPYGRQRDEDDKRQFVRY 591
N G ++ K+ +Y
Sbjct: 517 NEDGEVIEDKSKQPRTKY 534
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 382 (139.5 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
Identities = 88/223 (39%), Positives = 134/223 (60%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
+ +T SF L L H I + MT +Q + +P L+ GKD L ++TGSGKTLA+
Sbjct: 92 VFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQTGSGKTLAY 151
Query: 157 LIPAVELLYNAQFAPRNGTG--VIVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGSA 213
IP V+ L Q + G +V+ PTRELA+QT + LLK + V G+++GG
Sbjct: 152 GIPLVQSLQGMQSKIQRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGGEK 211
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
R+ E R+ KG+N+L++TPGRL+DH+++T+ ++ + L+IDEADRIL+ FE+++ I
Sbjct: 212 RKSEKARLRKGINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVI 271
Query: 274 MKLL--PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314
+ L ++ RQ L SAT T+ V LA +S P+ I + D
Sbjct: 272 LNALNAERETRQNVLLSATLTEGVTRLADISLND-PIRISIAD 313
Score = 288 (106.4 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
Identities = 54/108 (50%), Positives = 75/108 (69%)
Query: 372 IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPK 431
+Q+ +HG +Q++RT F +F K++ GILLCTDVAARGLD+P V WIVQY+ P P
Sbjct: 417 VQLQFLRLHGNMEQEERTEVFQEFLKSKTGILLCTDVAARGLDLPQVTWIVQYNAPASPA 476
Query: 432 EYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQ 479
EYIHR+GRTAR G GN+LL L P E +++ L + K+ V E + ++
Sbjct: 477 EYIHRIGRTAR-IGCHGNSLLVLAPSEAEYVSLLASHKINVSEIKMEK 523
Score = 96 (38.9 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 322 EGLQQGYCVVPSAKRFILLYSFL----KRNLSKKVMVFFSSCNSVKFHSELL 369
E L+Q + +VPS R + L +F+ K K+++FFSSC V+FH ELL
Sbjct: 345 EKLKQYFMMVPSKLRLVTLAAFVLEKCKYEKQHKMIIFFSSCEQVEFHYELL 396
Score = 91 (37.1 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
Identities = 35/114 (30%), Positives = 59/114 (51%)
Query: 473 KEYEFDQKKL---ANV-QSHLEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVH 526
K Y D +++ A V Q+ E V ++ + AK A +S++ AY ++ S+K IF++
Sbjct: 543 KSYGVDPQEVRERATVLQTQFENYVHSSEGTIRWAKKALQSFLCAYTAYPRSLKHIFHIK 602
Query: 527 RLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQR 580
+ L VA SF P+ NLT +A+ +KKT K R+ + +G+ R
Sbjct: 603 SIHLGHVAKSFGLRDAPQ-NLTTLPTANS-KKKT-KPRAKRSDLLKKT-HGKHR 652
>UNIPROTKB|H7C452 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:2741 ChiTaRS:DDX18
EMBL:AC009312 EMBL:AC009404 ProteinModelPortal:H7C452 PRIDE:H7C452
Ensembl:ENST00000415038 Bgee:H7C452 Uniprot:H7C452
Length = 214
Score = 508 (183.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 96/130 (73%), Positives = 106/130 (81%)
Query: 345 KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILL 404
++N KK+MVFFSSC SVK+H ELL YI + IHGKQKQ KRTTTFF FC A+ G LL
Sbjct: 85 QKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLL 144
Query: 405 CTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRY 464
CTDVAARGLDIP VDWIVQYDPPD+PKEYIHRVGRTARG RG+ALL L PEEL FLRY
Sbjct: 145 CTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRY 204
Query: 465 LKAAKVPVKE 474
LK +KVP+ E
Sbjct: 205 LKQSKVPLSE 214
Score = 292 (107.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 56/86 (65%), Positives = 71/86 (82%)
Query: 241 NTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLAR 300
NT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP + RQT LFSATQT+KVEDLAR
Sbjct: 1 NTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR-RQTMLFSATQTRKVEDLAR 59
Query: 301 LSFQTTPVYIDVDDGRTKVTNEGLQQ 326
+S + P+Y+ VDD + T +GL+Q
Sbjct: 60 ISLKKEPLYVGVDDDKANATVDGLEQ 85
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 174/489 (35%), Positives = 283/489 (57%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F+ LS T ++D + T+IQ + + G DV+GAA+TGSGKTLA +IP +E
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L+ A+++P G G ++I PTRELA+QT + + +H + GLVIGGS E RI
Sbjct: 138 LWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI-S 196
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
G+N++V TPGRLL H+ +L+ LV+DEADR+L+ F +++ I+ LP +RQ
Sbjct: 197 GINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPA-ERQ 255
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSATQT+ V+DL R+ PV++ V + + T + L+Q Y +V + L+SF
Sbjct: 256 TLLFSATQTRNVKDLCRVC-TNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSF 314
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
++ + KK +VF SSC +F +E ++ + + G Q+KR TF F +++
Sbjct: 315 IEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAA 374
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP-EELQ 460
+L+ TDVA+RGLD +DW++Q D P + +YIHRVGR+AR + + GN+LL + P +E
Sbjct: 375 VLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDS-GNSLLMVSPSQEEA 433
Query: 461 FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMK 520
+ L+ +P++E + +++V+ L ++A + L + A+ + +Y+ + + K
Sbjct: 434 MIGKLEKHSIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDK 493
Query: 521 DIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQR 580
+F+V +D A+A SF S P+V ++ A K +K + E E++ G+
Sbjct: 494 KVFDVEAIDAAALADSFGLVSVPRVRF-LNKKAKKSGEKLMEKEVKEEE-EEASLVGKFA 551
Query: 581 -DEDDKRQF 588
DEDD+ F
Sbjct: 552 IDEDDEDIF 560
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 412 (150.1 bits), Expect = 7.1e-77, Sum P(4) = 7.1e-77
Identities = 97/236 (41%), Positives = 145/236 (61%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
+ ++ SF SLGL +++ MGF+ T +QA+A+P ++ G+DVL A TG+GKT+A+
Sbjct: 25 LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAY 84
Query: 157 LIPAVELL--YNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL-KYHSQTVGLVIGGSA 213
L P + L ++ + +GT +VI PTREL +Q + + LL ++H G V+GG
Sbjct: 85 LAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEK 144
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
+ E R+ KG+++L+ATPGRLLDHL+NT F++KNL+ ++ DEAD ILE + +E+ QI
Sbjct: 145 KAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQI 204
Query: 274 MKLL--------------PKK-DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314
+KLL PK +Q L SAT KV DLA+LS PV I +D+
Sbjct: 205 IKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDD-PVMIGLDN 259
Score = 241 (89.9 bits), Expect = 7.1e-77, Sum P(4) = 7.1e-77
Identities = 50/105 (47%), Positives = 67/105 (63%)
Query: 371 YIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEP 430
+++ F +HG +Q+ R + F F ++ +LL TDVAARGLD P V I+QYD P E
Sbjct: 371 FLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEA 430
Query: 431 KEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEY 475
EY+HRVGRTAR G +G ALLFL P E+ +L+ LK + EY
Sbjct: 431 TEYVHRVGRTAR-IGEKGEALLFLQPIEIDYLKELKKHGASLTEY 474
Score = 88 (36.0 bits), Expect = 7.1e-77, Sum P(4) = 7.1e-77
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 324 LQQGYCVVPSAKRFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELLRYIQ 373
L Q Y VP R + L S LK R S+KV+VFFS+ ++V FH LL Q
Sbjct: 302 LVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQ 355
Score = 80 (33.2 bits), Expect = 7.1e-77, Sum P(4) = 7.1e-77
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 484 NVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS--MKDIFNVHRLDLQAVAASFCFSS 541
++Q LE L + AK+A+ S++ Y +H +K IF V +L L VA SF
Sbjct: 506 SLQRALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALRE 565
Query: 542 PPKVNLTIDSSASKFRKKTRKVEGSR 567
P + + RK+ + +G +
Sbjct: 566 QPSLVGKSHHKETMKRKRDERQKGQQ 591
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 388 (141.6 bits), Expect = 2.0e-74, Sum P(4) = 2.0e-74
Identities = 85/223 (38%), Positives = 138/223 (61%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
+ ++ +F +L L H I + MT +Q +++P L+ G+D L ++TGSGKTLA+
Sbjct: 128 VFTSDAFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 187
Query: 157 LIPAVELLYNAQFAPRNGTG--VIVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGSA 213
IP V+ L Q + G G +++ PTRELA+Q+ + LLK + V G+++GG
Sbjct: 188 CIPVVQSLQAMQSKIQRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK 247
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
R+ E R+ KG+N+L++TPGRL+DH+++TK ++ ++ L++DEADRIL+ FE+++ I
Sbjct: 248 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFRQIRWLILDEADRILDLGFEKDLTVI 307
Query: 274 MKLLPKK--DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314
+ + + +RQ L SAT T+ V LA +S PV I V D
Sbjct: 308 LNAVNAECQERQNVLLSATLTEGVARLADISLHD-PVSISVLD 349
Score = 264 (98.0 bits), Expect = 2.0e-74, Sum P(4) = 2.0e-74
Identities = 49/100 (49%), Positives = 68/100 (68%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438
+H +Q++RT F DF ++ GIL CTD+AARGLD+P V WIVQY+ P P EYIHR+G
Sbjct: 460 LHSALEQEERTAVFQDFTHSKTGILFCTDIAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 519
Query: 439 RTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFD 478
RTAR G G++LL L P E +++ L + K+ V E + +
Sbjct: 520 RTAR-IGCHGSSLLVLAPSEAEYVNSLASHKINVSEVKME 558
Score = 94 (38.1 bits), Expect = 2.0e-74, Sum P(4) = 2.0e-74
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 323 GLQQGYCVVPSAKRFILLYSFL----KRNLSKKVMVFFSSCNSVKFHSEL 368
GL+Q VVPS R + L +F+ K +KV+VFFSSC V+FH L
Sbjct: 382 GLEQHVVVVPSKLRLVCLAAFILQKCKFERDQKVIVFFSSCELVEFHYTL 431
Score = 75 (31.5 bits), Expect = 2.0e-74, Sum P(4) = 2.0e-74
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 485 VQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAASFCFSSP 542
+Q+ E V ++ AK A +S+I AY ++ +K IF++ L L +A SF
Sbjct: 595 LQTLFEDYVHSSEETVSGAKKALQSFIRAYATYPRELKHIFHIRLLHLGHMAKSFGLRDA 654
Query: 543 PKVNLTIDSSASKFRKKTRK 562
PK NL +SA K +K K
Sbjct: 655 PK-NLC--ASAMKKKKANLK 671
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 177/462 (38%), Positives = 263/462 (56%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LS+ T +A+ + F TQ+Q ++ P + GKDVLGAA TGSGKTLAFLIP +E
Sbjct: 74 FAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEH 133
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L+ +++ +G G I+I PTRELA Q K + K+H + GL+IGG + E R+ +
Sbjct: 134 LFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ 193
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
N+L+ TPGRLL H+ F ++ LV+DEADR L+ F++ + I++ P RQ
Sbjct: 194 -CNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPV-RQ 251
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYI--------DVDDGRTKVT-N-------EGLQQG 327
T LFSATQT V+DLARL+ + PVY+ + TK T N E LQQ
Sbjct: 252 TLLFSATQTNTVQDLARLNLKD-PVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQS 310
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDC--FDIHGKQKQ 385
Y V+ + +L+SF+K +L +K++VF +SC K+ E+ ++ ++G Q
Sbjct: 311 YVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQ 370
Query: 386 QKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEG 445
+R + DF + ++ TDVA+RGLD PAV+W+VQ D P++ +YIHR GR+AR +
Sbjct: 371 DRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNK- 429
Query: 446 ARGNALLFLIPEELQFL-RYLKAA-KVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSA 503
RG LL L P E +++ LK + ++ + D KKL + + +E +A L +A
Sbjct: 430 TRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPELRATA 489
Query: 504 KDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
+ A+ SYI + K +FNV LDL A A S + P+V
Sbjct: 490 QRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRV 531
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 187/514 (36%), Positives = 285/514 (55%)
Query: 107 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLY 165
+ LS RA+QD+GF MT +Q+ +P M KDV A TGSGKTLAF+IP +E LL
Sbjct: 14 VALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLR 73
Query: 166 NAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ-TVGLVIGGSARRGEAERIVK- 223
+ + G I+I PTRELAIQ V K+ + + L+IGG + E+ +
Sbjct: 74 REEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEH 133
Query: 224 GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
G N++VATPGRL D + G K+L LV+DEADR+L+ FE + I+ LP
Sbjct: 134 GGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLP 193
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEG-----LQQGYCVVPS 333
K+ R+T LFSATQT++VE+L R + PV I V + TN L+ Y + +
Sbjct: 194 KQ-RRTGLFSATQTQEVENLVRAGLRN-PVRISVKEKGVAATNTQKTPTRLENYYMICKA 251
Query: 334 AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTT 391
++F L FL+++ +K +VFFS+C V+++ + L + QV IHGK K KR
Sbjct: 252 DEKFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKMKH-KRNKI 310
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F +F + GIL+CTDV ARG+DIP V W++QYDPP ++HR GRTAR G G+AL
Sbjct: 311 FTEFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTAR-IGNAGSAL 369
Query: 452 LFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLNKSAKDAYRS 509
+FL+P E ++ +L K P++E + Q+ + ++ L+ + +A+ K K A+ S
Sbjct: 370 VFLLPMEESYINFLSINQKCPMQEMQ-PQRNVLDLLPKLKSMALADRAVFEKGMK-AFVS 427
Query: 510 YILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVN------------LTIDSSASKFR 557
YI AY H IF + LD ++A F PK+ +T+++ + F+
Sbjct: 428 YIQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKMPELRGKCFPDFTPVTVNTDSIPFK 487
Query: 558 KKTRKVEGSRNGFSESNPYGRQRDEDD-KRQFVR 590
K R+ + + + ++R+E + K++F++
Sbjct: 488 DKNREKQRQK----QLEQQRKEREESEGKKKFIK 517
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 378 (138.1 bits), Expect = 9.2e-72, Sum P(4) = 9.2e-72
Identities = 86/223 (38%), Positives = 134/223 (60%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
+ S +F L L H I + MT +Q +++P L+ G+D L ++TGSGKTLA+
Sbjct: 99 VFSPEAFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 158
Query: 157 LIPAVELLY--NAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGSA 213
IP V+ L ++ +G +V+ PTRELA+Q+ + LLK + V G+++GG
Sbjct: 159 CIPVVQSLQALTSKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK 218
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
R+ E R+ KG+N+L++TPGRL+DH+++TK + ++ LV+DEADRIL+ FE+++ I
Sbjct: 219 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEADRILDLGFEKDVTVI 278
Query: 274 MKLLPKK--DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314
+ + + RQ L SAT T+ V LA +S PV I V D
Sbjct: 279 LNAVNAECQKRQNVLLSATLTEGVTRLADISLHN-PVSISVLD 320
Score = 273 (101.2 bits), Expect = 9.2e-72, Sum P(4) = 9.2e-72
Identities = 50/100 (50%), Positives = 69/100 (69%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438
+HG KQ++RT+ F +F + G+LLCTDVA+RGLD+P V WIVQY P P EYIHR+G
Sbjct: 422 LHGNMKQEERTSVFHEFSHSGTGVLLCTDVASRGLDLPQVTWIVQYSAPSAPAEYIHRIG 481
Query: 439 RTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFD 478
RTAR G G++LL L P E +++ L + K+ V E + +
Sbjct: 482 RTAR-IGCHGSSLLILAPSEAEYVNSLASHKINVSEIKLE 520
Score = 85 (35.0 bits), Expect = 9.2e-72, Sum P(4) = 9.2e-72
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 322 EGLQQGYCVVPSAKRFILLYSFL----KRNLSKKVMVFFSSCNSVKFHSEL 368
E L Q +VPS R + L +F+ K +K++VFFSSC V+FH L
Sbjct: 343 ESLDQYVVLVPSKLRLVCLAAFILKKCKFEKDQKMIVFFSSCELVEFHYNL 393
Score = 74 (31.1 bits), Expect = 9.2e-72, Sum P(4) = 9.2e-72
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 485 VQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAASFCFSSP 542
+Q+ E V ++ + AK A +S+I AY ++ +K IF+V L L VA SF
Sbjct: 557 LQTVFEDYVHSSQRMVSWAKKALQSFIRAYATYPKELKSIFHVRSLHLGHVAKSFGLRDA 616
Query: 543 PKVNLTIDS 551
P+ NL + +
Sbjct: 617 PR-NLGVSA 624
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 182/521 (34%), Positives = 288/521 (55%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
S++SL + H ++++GF +MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 SWESLPVPLHPQVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VELLYNAQFA-PRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
VE+L + ++ G I+I PTRELA+Q V K Q ++ IGG +
Sbjct: 68 VEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
R + G N++VATPGRL D + +G ++L+ LV+DEADR+L+ FE +
Sbjct: 128 ARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE+L R + PV I V + T+ T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVENLVRAGLRN-PVRISVKEKGVAASSTQKTPSRLENH 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQ 383
Y V + ++F L FL+ + +K +VFFS+C V+++ + L++ +++ C IHGK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMC--IHGKM 303
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR- 442
K KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR
Sbjct: 304 KY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARI 362
Query: 443 GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNK 501
G G G+AL+FL+P E ++ +L K P++E + QK A++ L+ + + + +
Sbjct: 363 GHG--GSALVFLLPMEESYISFLAINQKCPLQEMKL-QKNTADLLPKLKAMALGDRAVFE 419
Query: 502 SAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK------------VNLTI 549
A+ SY+ AY H IF + LD ++A F PK V + +
Sbjct: 420 KGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDV 479
Query: 550 DSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
++ F+ K R+ + + + + + D +R+F++
Sbjct: 480 NTDTIPFKDKIREKQRQKQLLEQQRK--EKTENDGRRKFIK 518
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 180/465 (38%), Positives = 265/465 (56%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
S++SL H A+ +GF MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 SWESLPTQLHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
+E LL + +N G I+I PTRELAIQ V K Q ++ IGG +
Sbjct: 68 LEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
R + G N++VATPGRL D + +G K+L+ LV+DEADR+L+ FE +
Sbjct: 128 SRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE L R + PV I V + T+ T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVESLVRAGLRN-PVRISVKEKGVAASSTQKTPSRLENY 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQ 383
Y V + ++F L FL+ + +K ++FFS+C V+++ + L++ +++ C IHGK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMC--IHGKM 303
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR- 442
K KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR
Sbjct: 304 KH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARI 362
Query: 443 GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLN 500
G G G+AL+FL+P E ++ +L+ K P++E + QK ++ L+ + +A+
Sbjct: 363 GHG--GSALVFLLPMEESYVTFLEINQKCPLQEMKL-QKNTGDLLPKLKSMALADRAVFE 419
Query: 501 KSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
K K A+ SY+ AY H IF + LD ++A F PK+
Sbjct: 420 KGMK-AFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKM 463
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 192/520 (36%), Positives = 282/520 (54%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
S++SL + H A++++GF MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 SWESLQVPLHPLVLGALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
+E LL + +N G IVI PTRELAIQ V K+ Q ++ IGG +
Sbjct: 68 LEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
ER + G N++VATPGRL D + +G K+L LV+DEADR+L+ FE +
Sbjct: 128 ERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE+L R + PV I V + T+ T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVENLVRAGLRN-PVRISVKEKGVAASSTQKTPSRLENH 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQ 385
Y + + ++F L FL+ +K +VFFS+C V+++ + L + +V IHGK K
Sbjct: 246 YMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALVQRVKILCIHGKMKY 305
Query: 386 QKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR-GE 444
KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR G
Sbjct: 306 -KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGH 364
Query: 445 GARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLNKS 502
G G+AL+FL+P E ++ +L K P++E Q+ ++ L + +A+ K
Sbjct: 365 G--GSALVFLLPMEEAYINFLAINQKCPLQEMSL-QRNTVDLLPKLRAMALADRAVFEKG 421
Query: 503 AKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK------------VNLTID 550
K A+ S++ AY H IF + LD +A F P+ V + ID
Sbjct: 422 MK-AFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELKGKQFPDFVPVDID 480
Query: 551 SSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
+ F+ K R E R E R +E +R+F++
Sbjct: 481 TDTIPFKDKIR--EKQRQKLLEQKRKERTENEG-RRKFIK 517
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 186/512 (36%), Positives = 283/512 (55%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNA 167
LS A+QD+GF MT +Q+ +P M KDV A TGSGKTLAF+IP +E LL
Sbjct: 16 LSPGVLLALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 168 QFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ-TVGLVIGGSARRGEAERIVK-GV 225
+ + G I+I PTRELAIQ V K+ + + L+IGG + E+ + G
Sbjct: 76 EKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGG 135
Query: 226 NLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
N++VATPGRL D + G K+L LV+DEADR+L+ FE + I+ LPK+
Sbjct: 136 NIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQ 195
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEG-----LQQGYCVVPSAK 335
R+T LFSATQT++VE+L R + PV I V + TN L+ Y + + +
Sbjct: 196 -RRTGLFSATQTQEVENLVRAGLRN-PVRISVKEKGVAATNTQKTPTRLENYYMICKADE 253
Query: 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFF 393
+F L FL+++ +K +VFFS+C V+++ + L + QV IHGK K KR F
Sbjct: 254 KFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKMKH-KRNKIFT 312
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
+F + GIL+CTDV ARG+DIP V W++QYDPP ++HR GRTAR G G+AL+F
Sbjct: 313 EFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTAR-IGNAGSALVF 371
Query: 454 LIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLNKSAKDAYRSYI 511
L+P E ++ +L K P++E + Q+ + ++ L+ + +A+ K K A+ SYI
Sbjct: 372 LLPMEESYINFLSINQKCPMQEMQ-PQRNVLDLLPKLKSMALADRAVFEKGMK-AFVSYI 429
Query: 512 LAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVN------------LTIDSSASKFRKK 559
AY H IF + LD ++A F PK+ +T+++ + F+ K
Sbjct: 430 QAYAKHECNLIFRIKDLDFASLAKGFALLKMPKMPELRGKCFPDFTPVTVNTDSIPFKDK 489
Query: 560 TRKVEGSRNGFSESNPYGRQRDEDD-KRQFVR 590
R+ + + + ++R+E + K++F++
Sbjct: 490 NREKQRQK----QLEQQRKEREESEGKKKFIK 517
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 177/465 (38%), Positives = 270/465 (58%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
S++SL + H A++++GF +MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
+E LL + ++ G I+I PTRELAIQ V K+ + ++ IGG +
Sbjct: 68 LEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
ER + G N++VATPGRL D + +G ++L LV+DEADR+L+ FE +
Sbjct: 128 ERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE+L R + PV + V + + T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVENLVRAGLRN-PVRVSVKEKGVAASSAQKTPSRLENY 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQ 383
Y V + ++F L FL+ + +K +VFFS+C V+++ + L++ +++ C IHGK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMC--IHGKM 303
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR- 442
K KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR
Sbjct: 304 KY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARI 362
Query: 443 GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLN 500
G G G+AL+FL+P E ++ +L K P++E + Q+ A++ L+ + +A+
Sbjct: 363 GHG--GSALVFLLPMEESYINFLAINQKCPLQEMK-PQRNTADLLPKLKSMALADRAVFE 419
Query: 501 KSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
K K A+ SY+ AY H IF + LD ++A F PK+
Sbjct: 420 KGMK-AFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKM 463
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 192/522 (36%), Positives = 284/522 (54%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
+++SL + H A++++GF MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
+E LL + +N G IVI PTRELAIQ V K+ Q ++ IGG +
Sbjct: 68 LEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
ER + G N++VATPGRL D + +G K+L LV+DEADR+L+ FE +
Sbjct: 128 ERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE+L R + PV I V + T+ T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVENLVRAGLRN-PVRISVKEKGVAASSTQKTPSRLENH 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQ 383
Y + + ++F L FL+ +K +VFFS+C V+++ + LL+ +++ C IHGK
Sbjct: 246 YMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILC--IHGKM 303
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR- 442
K KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR
Sbjct: 304 KY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARI 362
Query: 443 GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLN 500
G G G+AL+FL+P E ++ +L K P++E Q+ ++ L + +A+
Sbjct: 363 GHG--GSALVFLLPMEEAYINFLAINQKCPLQEMSL-QRNTIDLLPKLRAMALADRAVFE 419
Query: 501 KSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK------------VNLT 548
K K A+ S++ AY H IF + LD +A F P+ V +
Sbjct: 420 KGMK-AFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELRGKQFPDFVPVD 478
Query: 549 IDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
ID+ F+ K R E R E R +E K+ F++
Sbjct: 479 IDTDTIPFKDKIR--EKQRQKLLEQKRKERSENEGRKK-FIK 517
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 181/521 (34%), Positives = 287/521 (55%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
S++SL + H ++++GF +MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 SWESLPVPLHPKVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VELLYNAQFA-PRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
E+L + ++ G I+I PTRELA+Q V K Q ++ IGG +
Sbjct: 68 EEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
R + G N++VATPGRL D + +G ++L+ LV+DEADR+L+ FE +
Sbjct: 128 ARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE+L R + PV I V + T+ T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVENLVRAGLRN-PVRISVKEKGVAASSTQKTPSRLENH 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQ 383
Y V + ++F L FL+ + +K +VFFS+C V+++ + L++ +++ C IHGK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMC--IHGKM 303
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR- 442
K KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR
Sbjct: 304 KY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARI 362
Query: 443 GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNK 501
G G G+AL+FL+P E ++ +L K P++E + QK A++ L+ + + + +
Sbjct: 363 GHG--GSALVFLLPMEESYISFLAINQKCPLQEMKL-QKNTADLLPKLKAMALGDRAVFE 419
Query: 502 SAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK------------VNLTI 549
A+ SY+ AY H IF + LD ++A F PK V + +
Sbjct: 420 KGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDV 479
Query: 550 DSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
++ F+ K R+ + + + + + D +R+F++
Sbjct: 480 NTDTIPFKDKIREKQRQKQLLEQQRK--EKTENDGRRKFIK 518
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 178/465 (38%), Positives = 266/465 (57%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
S++SL + H +Q++GF +MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 SWESLPVPLHPRVLDVLQELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
+E LL + ++ G I+I PTRELA+Q V K Q ++ IGG +
Sbjct: 68 LEILLRREEKLKKSQVGAIIITPTRELAVQIDEVLSHFTKPFPQFSQILWIGGRNPGEDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
R + G N++VATPGRL D + +G K+L LV+DEADR+L+ FE +
Sbjct: 128 ARFKEHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE+L R + PV I V + T+ T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVENLVRAGLRN-PVRISVKEKGAAASSTQKTPSRLENY 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQ 383
Y V + ++F L FL+ + +K +VFFS+C V+++ + L+R +++ C IHGK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVRSVKIMC--IHGKM 303
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR- 442
K KR F +F + + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR
Sbjct: 304 KY-KRNKIFMEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARI 362
Query: 443 GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLN 500
G G G+AL+FL+P E ++ +L K P++ + QK ++ L+ + +A+
Sbjct: 363 GHG--GSALVFLLPMEESYVNFLAINQKCPLQAMKL-QKNTVDLLPKLKSMALADRAVFE 419
Query: 501 KSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
K K A+ SY+ AY H IF + LD ++A F PK+
Sbjct: 420 KGMK-AFVSYVQAYAKHECNLIFRLKDLDFASIARGFALLRMPKM 463
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 171/455 (37%), Positives = 259/455 (56%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNA 167
L + + ++++GF +MT +Q+ +P M KDV A TGSGKTLAF+IPA+E LL
Sbjct: 16 LHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKRE 75
Query: 168 QFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ-TVGLVIGGSARRGEAERI-VKGV 225
+ + G ++I PTRELA+Q V L+ Q T L+IGGS + E++ +G
Sbjct: 76 EKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGA 135
Query: 226 NLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
N+++ATPGRL D + G K+L LV+DEADR+L+ FE + I+ LPK+
Sbjct: 136 NIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQ 195
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQGYCVVPSAK 335
R+T LFSATQT+++E L R + PV I V + + T L Y + + +
Sbjct: 196 -RRTGLFSATQTQELEKLVRAGLRN-PVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEE 253
Query: 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQKQQKRTTT 391
+F L +FL+++ +K +VFFS+C V++ + L++ + + C IHGK K KR
Sbjct: 254 KFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHC--IHGKMKH-KRNKI 310
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F DF + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR G +GNAL
Sbjct: 311 FADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTAR-IGNQGNAL 369
Query: 452 LFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSY 510
+FL+P E ++ +L K P++ + K + +V L+ + + + + A+ SY
Sbjct: 370 VFLLPMEESYVNFLSINQKCPLQSFS-SVKDVVDVLPKLKAMALGDRAMFEKGMRAFVSY 428
Query: 511 ILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
+ AY H IF + LD A+A F PK+
Sbjct: 429 VQAYAKHECSLIFRIKDLDFAALARGFALLRLPKM 463
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 660 (237.4 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 164/418 (39%), Positives = 242/418 (57%)
Query: 148 TGSGKTLAFLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVG 206
TGSGKTLAF+IP +E LL + +N G I+I PTRELAIQ V K Q
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQ 249
Query: 207 LV-IGGSARRGEAERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEAD 259
++ IGG + R + G N++VATPGRL D + +G K+L+ LV+DEAD
Sbjct: 250 ILWIGGRNPADDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEAD 309
Query: 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD----- 314
R+L+ FE + I++ LPK+ R+T LFSATQT++VE L R + PV I V +
Sbjct: 310 RLLDMGFEASINTILEFLPKQ-RRTGLFSATQTQEVESLVRAGLRN-PVRISVKEKGVAA 367
Query: 315 GRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLR 370
T+ T L+ Y V + ++F L FL+ + +K ++FFS+C V+++ + L++
Sbjct: 368 SSTQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVK 427
Query: 371 YIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEP 430
+++ C IHGK K KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP
Sbjct: 428 SVKIMC--IHGKMKH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSA 484
Query: 431 KEYIHRVGRTAR-GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSH 488
++HR GRTAR G G G+AL+FL+P E ++ +L+ K P++E + QK ++
Sbjct: 485 SAFVHRCGRTARIGHG--GSALVFLLPMEESYVTFLEINQKCPLQEMKL-QKNTGDLLPK 541
Query: 489 LEKL-VANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
L+ + +A+ K K A+ SY+ AY H IF + LD ++A F PK+
Sbjct: 542 LKSMALADRAVFEKGMK-AFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKM 598
Score = 69 (29.3 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGK-TLAFLIP 159
S++SL H A+ +GF MT +Q+ +P M KDV A + S K +L+ P
Sbjct: 112 SWESLPTQLHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVSTSWKCSLSSCFP 171
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 180/465 (38%), Positives = 264/465 (56%)
Query: 103 SFDSLGLSQH--TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
S++SL H A+ +GF MT +Q+ +P M KDV A TGSGKTLAF+IP
Sbjct: 8 SWESLPTQLHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI 67
Query: 161 VE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV-IGGSARRGEA 218
+E LL + +N G I+I PTRELAIQ V K Q ++ IGG +
Sbjct: 68 LEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDV 127
Query: 219 ERIVK-GVNLLVATPGRLLDHLQN-TKGF----IYKNLKCLVIDEADRILEANFEEEMRQ 272
R + G N++VATPGRL D + +G K+L+ LV+DEADR+L+ FE +
Sbjct: 128 SRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINT 187
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD-----GRTKVTNEGLQQG 327
I++ LPK+ R+T LFSATQT++VE L R + PV I V + T+ T L+
Sbjct: 188 ILEFLPKQ-RRTGLFSATQTQEVESLVRAGLRN-PVRISVKEKGVAASSTQKTPSRLENY 245
Query: 328 YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE----LLRYIQVDCFDIHGKQ 383
Y V + ++F L FL+ + +K ++FFS+C V+++ + L++ +++ C IHGK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMC--IHGKM 303
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR- 442
K KR F +F K + GIL+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR
Sbjct: 304 KH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARI 362
Query: 443 GEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLEKL-VANNYYLN 500
G G G+AL+FL+P E ++ +L+ K P++E + QK ++ L+ + +A+
Sbjct: 363 GHG--GSALVFLLPMEESYVTFLEINQKCPLQEMKL-QKNTGDLLPKLKSMALADRAVFE 419
Query: 501 KSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
K K A+ SY+ AY H IF RL + +A F PK+
Sbjct: 420 KGMK-AFVSYVQAYAKHECNLIF---RLKAKILARGFALLRMPKM 460
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 160/446 (35%), Positives = 255/446 (57%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ 168
LS+ A+ GF+ T +QA +P L KDV+ A TGSGKTLAFL+P +E++ +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 169 FAPRNGTGV--IVICPTRELAIQTHAVAKDLLKYHSQTVG-LVIGGSARRGEAERIVK-G 224
P V ++I PTREL+ Q H VA+ + L++GG + + + G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 225 VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQT 284
NLL+ TPGRL D ++ + ++NL+ L++DEADR+L+ F++++ I+ LPK+ R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQ-RRT 201
Query: 285 ALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFL 344
LFSATQT+ V DLA+ + I + ++K T+ GL Y + ++ L L
Sbjct: 202 GLFSATQTQAVADLAKAGLRNAMEVISGAESKSK-TSSGLYCEYLKCEADQKSSQLVHLL 260
Query: 345 KRNLSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
N +KK++VFF +C V + +L I + F HGK Q+ R T F +A
Sbjct: 261 IENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASS 320
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
G+LLCTDVAARGLDIP +D++VQYDPP +P +IHRVGRTAR E +G A++FL+P+E
Sbjct: 321 GVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARME-RQGRAIVFLMPKETD 379
Query: 461 FLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMK 520
++ +++ +VP++E + + ++V + L + + + A+ S++ AY H
Sbjct: 380 YVEFMRIRRVPLQERKCSENA-SDVIPIIRSLAIKDRAVLEKGLQAFVSFVRAYKEHHCS 438
Query: 521 DIFNVHRLDLQAVAASFCFSSPPKVN 546
IF+ L++ +A + S P ++
Sbjct: 439 YIFSWKGLEIGKLAMGYGILSFPYIS 464
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 404 (147.3 bits), Expect = 9.0e-70, Sum P(3) = 9.0e-70
Identities = 96/232 (41%), Positives = 142/232 (61%)
Query: 100 STTSFDSLGLSQHTFR-AIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
S+ ++ SL LS+ R + M + T IQ ++ P++ G D L A+TGSGKTL++LI
Sbjct: 205 SSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLI 264
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGE 217
P V+ L + +G ++I PTREL+ Q + + LLK ++ G+++GG R E
Sbjct: 265 PVVQKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAE 324
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
RI KG+N+LVATPGRLLDHLQNT+ F N+K ++DEAD++L+ FE+++ I+ LL
Sbjct: 325 KARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLL 384
Query: 278 PKKDR------QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEG 323
K R Q L SAT ++ + LA LS T+PVYI +D +KV +G
Sbjct: 385 DSKKRTMKFKRQNILVSATLSEGISRLASLSL-TSPVYIGLD---SKVLEKG 432
Score = 289 (106.8 bits), Expect = 9.0e-70, Sum P(3) = 9.0e-70
Identities = 57/101 (56%), Positives = 74/101 (73%)
Query: 374 VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEY 433
V F +HG+ QQ RT TFFDF + GILL TDV+ARGLD+P+V+WIVQYDP + K+Y
Sbjct: 604 VPIFKLHGELDQQTRTKTFFDFKNSPNGILLTTDVSARGLDLPSVNWIVQYDPCSDTKDY 663
Query: 434 IHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKE 474
IHR+GRTAR G +G +LLFL+P E +++ +L V VKE
Sbjct: 664 IHRIGRTAR-LGNQGCSLLFLLPSEKKYIDHLAKFNVSVKE 703
Score = 74 (31.1 bits), Expect = 9.0e-70, Sum P(3) = 9.0e-70
Identities = 21/85 (24%), Positives = 46/85 (54%)
Query: 479 QKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS--MKDIFNVHRLDLQAVAAS 536
+ ++ ++Q E+ + + + A+ AY+S++ +Y +H +K IF++ L L V+ S
Sbjct: 731 ESQVHDLQLLFERFLIYDSKAKEMARCAYQSFLRSYATHKADVKSIFHISYLHLGHVSKS 790
Query: 537 FCF-SSPPKVN-LTIDSSASKFRKK 559
F +P ++N ++ +K KK
Sbjct: 791 FALRETPTELNKMSAGIKGAKAAKK 815
Score = 69 (29.3 bits), Expect = 9.2e-47, Sum P(3) = 9.2e-47
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 349 SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRT 389
+ K++VFFSSC+SV FH + +++D K++ KRT
Sbjct: 492 NSKMIVFFSSCDSVDFHHYMFSNMKMD------KERGVKRT 526
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 407 (148.3 bits), Expect = 7.7e-69, Sum P(4) = 7.7e-69
Identities = 89/231 (38%), Positives = 146/231 (63%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDM-GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
I + + +LGL H + ++D+ + +T +Q + +P ++ GKDVL ++TGSGKTLA+
Sbjct: 323 IFTGSKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAY 382
Query: 157 LIPAVELLYNAQ--FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGSA 213
+P VELL Q ++G +VI PTREL +QT+ + + L+K ++ V G ++GG +
Sbjct: 383 ALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGES 442
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
R+ E R+ KG+N+L+ TPGRL+DHL +T F L+ L++DEADR+LE +E +++Q+
Sbjct: 443 RKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQL 502
Query: 274 MKLLPKK-----DR-----QTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314
++ + K+ D+ Q L SAT T +V+ LA L+ + P+YID D
Sbjct: 503 VEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKN-PLYIDNSD 552
Score = 223 (83.6 bits), Expect = 7.7e-69, Sum P(4) = 7.7e-69
Identities = 41/98 (41%), Positives = 61/98 (62%)
Query: 377 FDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHR 436
F +HG Q +R F F +LL TDV RG+D+P + +VQY PP +++HR
Sbjct: 682 FKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHR 741
Query: 437 VGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKE 474
VGRTAR G +G A+LFL P E QF+R+L+ ++ +++
Sbjct: 742 VGRTARA-GRKGRAVLFLTPSEAQFVRHLEKKRIRIQQ 778
Score = 80 (33.2 bits), Expect = 7.7e-69, Sum P(4) = 7.7e-69
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 304 QTTPVYIDVDDG----RTKVTN-----EGLQQGYCVVPSAKRFILLYSFLKRNLSK---- 350
+T ++VDDG + VT E LQ Y VVP R + L S L + +
Sbjct: 568 ETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQ 627
Query: 351 -KVMVFFSSCNSVKFHSELL 369
K +VF S+ V FH ++L
Sbjct: 628 FKAIVFMSTTEMVNFHHDML 647
Score = 69 (29.3 bits), Expect = 7.7e-69, Sum P(4) = 7.7e-69
Identities = 26/112 (23%), Positives = 50/112 (44%)
Query: 479 QKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAAS 536
Q+ +N+Q + L+ ++ L+ + A+ S++ Y++ +K IFNV + A S
Sbjct: 799 QEAASNLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKS 858
Query: 537 FCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQF 588
F P +A K T ++ ++E +P Q + KR+F
Sbjct: 859 FALKEAPS-KFAAKHAAPKAAPPTNRLT-----YTERDPEKIQAQKRAKRRF 904
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 661 (237.7 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 171/470 (36%), Positives = 251/470 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
+S D LS + +Q GFQ MT +Q A+P L+ KDV A TGSGKTLAFL+P +
Sbjct: 7 SSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPML 66
Query: 162 ELLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ---TVGLVIGGSAR 214
E+L + P+ G +VI PTRELA Q V L++ L++GG++
Sbjct: 67 EILQRRHKETPWGPKE-IGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSI 125
Query: 215 RGEAERIVKGVN-LLVATPGRLLDHLQNTKGFI-----YKNLKCLVIDEADRILEANFEE 268
+ + + +LV TPGRL D Q + K+L+ LV+DEADR+L+ F+
Sbjct: 126 EEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKT 185
Query: 269 EMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGY 328
+ I+ LP++ R+T LFSATQT +V DL R + PV + V + + T LQ Y
Sbjct: 186 SVNNILGYLPRQ-RRTGLFSATQTTEVTDLIRAGLRN-PVLVSVKEKASVNTPARLQNFY 243
Query: 329 CVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQK 384
+V +F+ L FL + KVMVFF +C V++ +E L + + IHGK K
Sbjct: 244 RIVEPELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMK 303
Query: 385 QQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGE 444
KR F + +LLCTDV ARGLD+P ++W+VQ+DPP ++HRVGRTAR +
Sbjct: 304 N-KRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTAR-Q 361
Query: 445 GARGNALLFLIPEELQFLRYLKA------AKVPVKEYEF---DQKKLANVQSHLEKLVAN 495
G GNAL+FL+P E ++ +LK K+ +E E ++KKL V L +L A
Sbjct: 362 GNEGNALVFLLPSEDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQAA 421
Query: 496 NYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545
+ + A+ S++ AY H I + LDL +A ++ P++
Sbjct: 422 DKGVYDKGMRAFVSHVRAYTKHECSAILRLKDLDLGKMATAYGLLQLPRM 471
Score = 52 (23.4 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 553 ASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
A K RKK + E SR+G + Q D D+ +R
Sbjct: 550 AKKQRKKAAEAEASRSGKGKKRQQFSQEDLDELASDIR 587
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 367 (134.2 bits), Expect = 2.2e-67, Sum P(4) = 2.2e-67
Identities = 83/225 (36%), Positives = 138/225 (61%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGS-GKTLA 155
+ ++ +F +L L H I + +T IQ +++P L+ G+D L ++TGS GKTLA
Sbjct: 182 VFTSDAFQALDLHPHLISTINTVLKMSSLTSIQKQSIPVLLEGRDALVRSQTGSEGKTLA 241
Query: 156 FLIPAVELLYNAQFAPRNGTG--VIVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGS 212
+ IP V+ L + + G G +++ PTRELA+Q+ + LLK + V G+++GG
Sbjct: 242 YCIPMVQSLQAVKPKIQRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGE 301
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQ 272
R+ E R+ KG+N+L++TPGRL+DH+++TK + ++ L++DEADR+L+ FE+++
Sbjct: 302 KRKSEKARLRKGINILISTPGRLVDHIKSTKNMRFCRIRWLILDEADRLLDLGFEKDIAL 361
Query: 273 IMKLL--PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDG 315
I+ + + +RQ L SAT T+ V LA +S PV I V +G
Sbjct: 362 ILNAVNAERPERQNVLLSATLTEGVTRLADISLHE-PVRISVLEG 405
Score = 273 (101.2 bits), Expect = 2.2e-67, Sum P(4) = 2.2e-67
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438
+HG +Q++RT F +F +++ G+LLCTDVAARGLD+P V WIVQY P P EY+HR+G
Sbjct: 515 LHGDMEQEERTAVFQEFSRSKAGVLLCTDVAARGLDLPQVTWIVQYTAPSSPAEYVHRIG 574
Query: 439 RTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFD 478
RTAR G +G++LL L P E +++ L + K+ V E + +
Sbjct: 575 RTAR-IGFQGSSLLILAPSEAEYVNSLASHKIKVSEMKME 613
Score = 89 (36.4 bits), Expect = 2.2e-67, Sum P(4) = 2.2e-67
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 323 GLQQGYCVVPSAKRFILLYSFL----KRNLSKKVMVFFSSCNSVKFHSEL 368
GL+Q +VPS R + L +F+ K +K++VFFSSC V+FH L
Sbjct: 437 GLEQHVALVPSKLRLVSLAAFILQKCKFEPDQKMIVFFSSCELVEFHHSL 486
Score = 77 (32.2 bits), Expect = 2.2e-67, Sum P(4) = 2.2e-67
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 503 AKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK 559
AK A +S++ AY ++ +K IF+V L L VA SF PK NL SAS +KK
Sbjct: 668 AKKALQSFVRAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPK-NL----SASALKKK 721
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 532 (192.3 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 123/329 (37%), Positives = 190/329 (57%)
Query: 224 GVNLLVATPGRLLDHL----QNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
G N+L+ TPGR + L +N + F +K + L++DEADR+L+ F + I+ LPK
Sbjct: 178 GGNILIGTPGRTDEFLTRVVRNDQQFKFKEFEMLILDEADRLLDMGFHLPINSILLKLPK 237
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEG------LQQGYCVVPS 333
+ R+T LFSATQT +V++LAR + P + V + T+E L Y +VP
Sbjct: 238 Q-RRTGLFSATQTSEVKELARTGMRN-PFKVSVSVKHIE-THEDQSIPTTLDNRYMIVPV 294
Query: 334 AKRFILLYSFLKRNLSK-KVMVFFSSCNSVKFHSELLRYIQV----DCFDIHGKQKQQKR 388
+R L FL ++ K K++++F +C++V + ++L+ ++V F +HGK +R
Sbjct: 295 EERLNQLVHFLLNHIDKNKIIIYFLTCSTVDYFFKILQSVKVLSGKPFFSLHGKAPHSQR 354
Query: 389 TTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARG 448
F F +A G LL TD+AARGLDIP VDW++QYD P +PK ++HR+GRTAR G G
Sbjct: 355 IKVFDSFSQATNGCLLSTDLAARGLDIPNVDWVLQYDSPQDPKAFVHRIGRTAR-MGRDG 413
Query: 449 NALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYR 508
NAL+FL PEE ++ +LK KVP+ E + + NV ++K+ N+ + + A
Sbjct: 414 NALIFLSPEEDSYIEFLKIKKVPLVEM-VKAENVTNVLPEIKKISFNDREIMEKGVIAMV 472
Query: 509 SYILAYNSHSMKDIFNVHRLDLQAVAASF 537
S++ Y H IF HRL++ +A F
Sbjct: 473 SHVRGYKEHLCPYIFVFHRLNIGLLATGF 501
Score = 170 (64.9 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNA 167
LS T I +GF+ M+ +Q+ +P M KDVL A TGSGKTLAF+IP +E +L
Sbjct: 17 LSDSTLNTINRLGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKRE 76
Query: 168 QFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198
+ I+I PTRELAIQ V + L
Sbjct: 77 TNLKKTDIASIIISPTRELAIQIQQVLLEFL 107
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 389 (142.0 bits), Expect = 8.5e-67, Sum P(3) = 8.5e-67
Identities = 106/309 (34%), Positives = 166/309 (53%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
+ ++ +F LGL H I + MT +Q +++P L+ G+D L ++TGSGKTLA+
Sbjct: 97 VFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 156
Query: 157 LIPAVELLY--NAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGSA 213
IP V+ L ++ +G +V+ PTRELA+Q+ + LLK + V G+++GG
Sbjct: 157 CIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK 216
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
R+ E R+ KG+N+L++TPGRL+DH+++TK + L+ LV DEADRIL+ FE+++ I
Sbjct: 217 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI 276
Query: 274 MKLLPKK--DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTN--EGLQQGYC 329
+ + + RQ L SAT T+ V LA +S PV I V D N + Q C
Sbjct: 277 LNAVNAECQKRQNVLLSATLTEGVTRLADISLHD-PVSISVLDKSHDQLNPKDKAVQEVC 335
Query: 330 VVPSAKRFILLYSF-LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKR 388
P+ + L SF + +L + V V S V L +I C K ++ ++
Sbjct: 336 PPPAGDK---LDSFAIPESLKQHVTVVPSKLRLVC----LAAFILQKC-----KFEEDQK 383
Query: 389 TTTFFDFCK 397
FF C+
Sbjct: 384 MVVFFSSCE 392
Score = 274 (101.5 bits), Expect = 8.5e-67, Sum P(3) = 8.5e-67
Identities = 50/100 (50%), Positives = 70/100 (70%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438
+HG +Q++RT F +F + +G+LLCTDVAARGLD+P V WIVQY+ P P EYIHR+G
Sbjct: 429 LHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 488
Query: 439 RTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFD 478
RTAR G G++LL L P E +++ L + K+ V E + +
Sbjct: 489 RTAR-IGCHGSSLLILAPSEAEYVNSLASHKINVSEIKME 527
Score = 89 (36.4 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 322 EGLQQGYCVVPSAKRFILLYSFL----KRNLSKKVMVFFSSCNSVKFHSEL 368
E L+Q VVPS R + L +F+ K +K++VFFSSC V+FH L
Sbjct: 350 ESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSL 400
Score = 68 (29.0 bits), Expect = 8.5e-67, Sum P(3) = 8.5e-67
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 503 AKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAASFCFSSPPKVNLT 548
AK A +S+I AY ++ +K IF+V L L VA SF P+ NL+
Sbjct: 582 AKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPR-NLS 628
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 161/446 (36%), Positives = 250/446 (56%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNA- 167
LS A+ F+F T +QA +P L KDV A TGSGKTLAF++P VE+L +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 168 QFAPRNGTGV-IVICPTRELAIQTHAVAKDLLKYHSQTVG-LVIGGSARRGEAERIVK-G 224
F P+ + ++I PTREL+ Q + VA+ + + L++GG + + + I + G
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 225 VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQT 284
N+L+ TPGRL D ++ + ++NL+ L++DEADR+LE F+ ++ I+ LPK+ R+T
Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQ-RRT 201
Query: 285 ALFSATQTKKVEDLARLSFQTTPVYIDV-----DDGRTKVTNE----GLQQGYCVVPSAK 335
LFSATQT+ VE+LA+ + PV ++V + ++TN GL Y + K
Sbjct: 202 GLFSATQTEGVEELAKAGLRN-PVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADK 260
Query: 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTT 391
+ L L +N KK++VFF +C SV + +L I + IHG KQ R
Sbjct: 261 KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKA 320
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F KA G LLCTDVAARGLDIP +D++VQYDPP +P + HR GRTAR G +G A+
Sbjct: 321 LASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTAR-LGRQGRAI 379
Query: 452 LFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYI 511
+FL+P+E ++ +++ +VP++E + + + + + + K K A+ S++
Sbjct: 380 VFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPIIRSAAMKDRAVMEKGLK-AFVSFV 438
Query: 512 LAYNSHSMKDIFNVHRLDLQAVAASF 537
AY H IF L++ +A +
Sbjct: 439 RAYKEHHCSFIFRWKDLEIGKLAMGY 464
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 389 (142.0 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 106/309 (34%), Positives = 166/309 (53%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156
+ ++ +F LGL H I + MT +Q +++P L+ G+D L ++TGSGKTLA+
Sbjct: 226 VFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 285
Query: 157 LIPAVELLY--NAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGSA 213
IP V+ L ++ +G +V+ PTRELA+Q+ + LLK + V G+++GG
Sbjct: 286 CIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK 345
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
R+ E R+ KG+N+L++TPGRL+DH+++TK + L+ LV DEADRIL+ FE+++ I
Sbjct: 346 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI 405
Query: 274 MKLLPKK--DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTN--EGLQQGYC 329
+ + + RQ L SAT T+ V LA +S PV I V D N + Q C
Sbjct: 406 LNAVNAECQKRQNVLLSATLTEGVTRLADISLHD-PVSISVLDKSHDQLNPKDKAVQEVC 464
Query: 330 VVPSAKRFILLYSF-LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKR 388
P+ + L SF + +L + V V S V L +I C K ++ ++
Sbjct: 465 PPPAGDK---LDSFAIPESLKQHVTVVPSKLRLVC----LAAFILQKC-----KFEEDQK 512
Query: 389 TTTFFDFCK 397
FF C+
Sbjct: 513 MVVFFSSCE 521
Score = 274 (101.5 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 50/100 (50%), Positives = 70/100 (70%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438
+HG +Q++RT F +F + +G+LLCTDVAARGLD+P V WIVQY+ P P EYIHR+G
Sbjct: 558 LHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 617
Query: 439 RTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFD 478
RTAR G G++LL L P E +++ L + K+ V E + +
Sbjct: 618 RTAR-IGCHGSSLLILAPSEAEYVNSLASHKINVSEIKME 656
Score = 89 (36.4 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 322 EGLQQGYCVVPSAKRFILLYSFL----KRNLSKKVMVFFSSCNSVKFHSEL 368
E L+Q VVPS R + L +F+ K +K++VFFSSC V+FH L
Sbjct: 479 ESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSL 529
Score = 68 (29.0 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 503 AKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAASFCFSSPPKVNLT 548
AK A +S+I AY ++ +K IF+V L L VA SF P+ NL+
Sbjct: 711 AKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPR-NLS 757
Score = 44 (20.5 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 211 GSARRGEA--ERIVKGV-NLLVATPGRLLDHLQNTK 243
G R G A R+ +GV V PG LL H T+
Sbjct: 69 GPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQ 104
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 167/467 (35%), Positives = 261/467 (55%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
+S T FD LS T + I+D GF+ MT +Q +P ++ GKD+L A+TG+GKT+AFL+
Sbjct: 77 LSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLL 136
Query: 159 PAVELLYNAQFAPRNGTG----VIVICPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSA 213
P++E + A A R+ V+V+CPTRELA Q A A LLKYH S V +VIGG+
Sbjct: 137 PSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTK 196
Query: 214 RRGEAERIVKG-VNLLVATPGRLLDHLQNTKGFIYK--NLKCLVIDEADRILEANFEEEM 270
E R+ K +LVATPGRL DH+ NT GF + +K LV+DEAD +L+ F E+
Sbjct: 197 LPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREI 256
Query: 271 RQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYID-VDDGRTKVTNEGLQQGYC 329
+I+ +PK+ RQT LFSAT + +V + ++ + +++ V +G + T++ + Q Y
Sbjct: 257 ERIIAAVPKQ-RQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGE-THQKVSQMYM 314
Query: 330 VVPSAKRFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQ 385
+ + F LLY LK+ N+ KV++F ++ + ++LL + ++ +IH ++ Q
Sbjct: 315 IASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQ 374
Query: 386 QKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEG 445
RT +F K++ IL+ +DV+ARG+D P V +VQ P + ++YIHR+GRT R +G
Sbjct: 375 SYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR-KG 433
Query: 446 ARGNALLFLIPEELQFLRYLKAAKVPVKEYE-FDQKKLANVQSHLEKLVANNYYLNKSAK 504
G +L L P E FL +K + D + + VQ L ++ N K A
Sbjct: 434 KEGEGVLLLAPWEEYFLSSVKDLPITKSSLPPIDHEAVKKVQKGLIQVEMTN----KEA- 488
Query: 505 DAYRSYILAYNSHSM--KDIFNVHRLDLQAVAASFCFSSPPKVNLTI 549
AY++++ Y S +D + L + S S PP + + I
Sbjct: 489 -AYQAWLGYYKSQKKIARDTTRLVEL-ANEFSRSMGLSIPPAIPVNI 533
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 165/463 (35%), Positives = 260/463 (56%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
+S T FD LS + +AI+D GF+ MT +Q +P ++ GKDVL A+TG+GKT+AFL+
Sbjct: 379 LSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 438
Query: 159 PAVELLYNAQFAPRNGTG----VIVICPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSA 213
PA+E + + A R+ V+V+CPTRELA Q A A LLKYH S V +VIGG+
Sbjct: 439 PAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTK 498
Query: 214 RRGEAERI-VKGVNLLVATPGRLLDHLQNTKGFIYK--NLKCLVIDEADRILEANFEEEM 270
E R+ +LVATPGRL DH++NT GF + +K LV+DEAD +L+ F ++
Sbjct: 499 LPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDI 558
Query: 271 RQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYID-VDDGRTKVTNEGLQQGYC 329
+I+ +PK+ RQT LFSAT ++V + ++ + +I+ V +G + T++ + Q Y
Sbjct: 559 ERIIAAVPKQ-RQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGE-THQKVTQMYM 616
Query: 330 VVPSAKRFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQ 385
+ + F LL+ LK N+ KV++F ++ + ++LL + ++ +IH ++ Q
Sbjct: 617 IASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQ 676
Query: 386 QKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEG 445
RT +F K++ IL+ +DV+ARG+D P V +VQ P + ++YIHR+GRT R +G
Sbjct: 677 SYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR-KG 735
Query: 446 ARGNALLFLIPEELQFLRYLKAAKVPVKEYE-FDQKKLANVQSHLEKLVANNYYLNKSAK 504
G +L L P E F+ +K + D + + VQ L ++ N K A
Sbjct: 736 KEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPIDPEAVKRVQKGLSQVEMKN----KEA- 790
Query: 505 DAYRSYILAYNSHSM--KDIFNVHRLDLQAVAASFCFSSPPKV 545
AY++++ Y S M +D + L + S SPP +
Sbjct: 791 -AYQAWLGYYKSQKMIARDTTRLVEL-ANEFSRSMGLDSPPAI 831
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 139/360 (38%), Positives = 221/360 (61%)
Query: 98 IMSTT--SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLA 155
+M+TT SF S+ LS+ + + ++GF+ TQIQ + +P ++GKD++GAA TGSGKT A
Sbjct: 253 MMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAA 312
Query: 156 FLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214
F++P +E LLY + P T V+++CPTRELA+Q H+VA + + V L IGG +
Sbjct: 313 FIVPILERLLYRPKKVPT--TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSL 370
Query: 215 RGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIM 274
+ + + + K ++++ATPGR +DH++N++GF +N++ +V+DEADR+LE F +E+ +I+
Sbjct: 371 KLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEII 430
Query: 275 KLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA 334
+ PK RQT LFSAT T KV+DL RLS PV + VD+ +T T + L Q + V
Sbjct: 431 QACPKS-RQTMLFSATMTDKVDDLIRLSLNR-PVRVFVDNKKT--TAKLLTQEFVRVRPQ 486
Query: 335 KRFI---LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + +L K ++ ++FF S + + ++ +IHG Q++R
Sbjct: 487 RELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRA 546
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
DF + LL TDVA+RG+DI ++ ++ Y+ P + Y+HRVGRTAR G G A+
Sbjct: 547 LEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARA-GRSGRAI 605
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 146/366 (39%), Positives = 213/366 (58%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
TSF LG+++ A +G++ T+IQ A+P + G+DV+G A TGSGKT AF +P +
Sbjct: 79 TSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVL 138
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ L A R T +V+ PTRELA Q L +++GG +A +
Sbjct: 139 QSLLAC--AQRLHT--LVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVL 194
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K ++++ATPGRL+DH++NTKGF + LK LV+DEADRIL +FE E+ +I+K++P+ D
Sbjct: 195 AKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPR-D 253
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
R+T LFSAT TKKV+ L R + Q PV V V + LQQ Y +PS + L
Sbjct: 254 RRTFLFSATMTKKVQKLQRAALQD-PVKCSVSSKYATV--DKLQQFYIFIPSKYKDCYLV 310
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
S L MVF +CN+ + + LLR + + +HG+ Q KR F +
Sbjct: 311 SILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRS 370
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+LL TDVA+RGLDIP VD ++ +D P K+YIHRVGRTAR G G ++ F+ +++
Sbjct: 371 VLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARA-GRSGKSITFVTQYDVEL 429
Query: 462 LRYLKA 467
+ ++A
Sbjct: 430 FQRIEA 435
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 155/434 (35%), Positives = 253/434 (58%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
TSF +L LS+ + I ++ F T IQ+ ++P ++GKD++ A+TGSGKT A++IP +
Sbjct: 130 TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPII 189
Query: 162 E-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY-HSQTVGLVIGGSARRGEAE 219
E LLY P T VI++ PTRELA+Q + K L + ++ +GL +GG R + E
Sbjct: 190 ERLLYK----PSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEE 245
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ ++++ATPGRL+DH++N+ F ++++ LVIDEADR+LE F++E+ +I+ L+PK
Sbjct: 246 QLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK 305
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFI 338
RQT LFSAT +++DL +LS Q PV I +D ++ V ++ LQQ + + +
Sbjct: 306 HKRQTLLFSATMNTRIQDLIQLSLQK-PVRIMIDPPKS-VASKLLQQFVRIRKRDQLKPA 363
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
LLY LK +S +V+VF + + +L + + ++HG Q++R +F
Sbjct: 364 LLYQLLK-GVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSL 422
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
E +L+CTD+AARGLDIP ++ ++ YD P + Y+HRVGRTAR G G ++ F + E
Sbjct: 423 EVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARA-GRDGTSITF-VGES 480
Query: 459 LQFLRYLKAA----KVPVKEYEFDQKKLAN-VQSHLEKLVANNYYLNKSAKDAYRSYI-L 512
Q +K+A K K ++ Q + N + E ++ K AK+ R+ + L
Sbjct: 481 SQERAIVKSAIVNGKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMEL 540
Query: 513 AYNSHSMKDIFNVH 526
S+ +K +H
Sbjct: 541 TKASNLIKHEQEIH 554
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 155/434 (35%), Positives = 253/434 (58%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
TSF +L LS+ + I ++ F T IQ+ ++P ++GKD++ A+TGSGKT A++IP +
Sbjct: 130 TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPII 189
Query: 162 E-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY-HSQTVGLVIGGSARRGEAE 219
E LLY P T VI++ PTRELA+Q + K L + ++ +GL +GG R + E
Sbjct: 190 ERLLYK----PSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEE 245
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ ++++ATPGRL+DH++N+ F ++++ LVIDEADR+LE F++E+ +I+ L+PK
Sbjct: 246 QLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK 305
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFI 338
RQT LFSAT +++DL +LS Q PV I +D ++ V ++ LQQ + + +
Sbjct: 306 HKRQTLLFSATMNTRIQDLIQLSLQK-PVRIMIDPPKS-VASKLLQQFVRIRKRDQLKPA 363
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
LLY LK +S +V+VF + + +L + + ++HG Q++R +F
Sbjct: 364 LLYQLLK-GVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSL 422
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
E +L+CTD+AARGLDIP ++ ++ YD P + Y+HRVGRTAR G G ++ F + E
Sbjct: 423 EVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARA-GRDGTSITF-VGES 480
Query: 459 LQFLRYLKAA----KVPVKEYEFDQKKLAN-VQSHLEKLVANNYYLNKSAKDAYRSYI-L 512
Q +K+A K K ++ Q + N + E ++ K AK+ R+ + L
Sbjct: 481 SQERAIVKSAIVNGKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMEL 540
Query: 513 AYNSHSMKDIFNVH 526
S+ +K +H
Sbjct: 541 TKASNLIKHEQEIH 554
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 592 (213.5 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 150/410 (36%), Positives = 227/410 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F L L +I+ M F T IQ+ A+P + GKD++G A+TGSGKT AF IP ++
Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEA 218
L++AQ P +V+ PTREL Q KD ++GL ++GG +A
Sbjct: 184 SLWHAQ-QPYFA---LVLAPTRELTFQI----KDTFDALGSSMGLRSSCIVGGMDMMDQA 235
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+++ +++VATPGR++DHL++TKGF KNLK LV+DEADR+L+ +F + +I+K++P
Sbjct: 236 RDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIP 295
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI 338
K R T LFSAT T K+E L R S PV + V T + L Q +V +
Sbjct: 296 IK-RTTYLFSATMTNKIEKLQRASLHN-PVRVAVSSKYQ--TADNLVQSMMLVNDGYKNT 351
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
+L L + K ++VF + + + L R + + +HG+ Q +R + F
Sbjct: 352 ILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSN 411
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ IL+ TDVAARGLDIP+VD ++ YD P + K YIHRVGRTAR G G ++ + +
Sbjct: 412 QANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARA-GRSGKSISLITQYD 470
Query: 459 LQ-FLRY--LKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKD 505
L+ +LR + K+P KE + ++ L + H++K A K D
Sbjct: 471 LEMYLRIESVLGKKLP-KEDKPPKEVLDALHVHVDKATAEAIRQTKEIHD 519
Score = 50 (22.7 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 542 PPK-----VNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDD 584
PPK +++ +D + ++ ++T+++ RNG GR+R+ DD
Sbjct: 491 PPKEVLDALHVHVDKATAEAIRQTKEIHDKRNGGG-----GRRRNRDD 533
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 150/385 (38%), Positives = 216/385 (56%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157
+ T +F LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF
Sbjct: 22 VEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 81
Query: 158 IPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217
+P + L P+ +V+ PTRELA Q + L +++GG +
Sbjct: 82 LPILNALLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQ 137
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ + K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++
Sbjct: 138 SLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 197
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P+ DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS +
Sbjct: 198 PR-DRKTFLFSATMTKKVQKLQRAALKN-PVKCAVSSKYQTV--EKLQQYYLFIPSKFKD 253
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L L M+F S+CN+ + + LLR + +HG+ Q KR + F
Sbjct: 254 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKA 313
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP- 456
+ ILL TDVA+RGLDIP VD +V +D P K+YIHRVGRTAR G G A+ F+
Sbjct: 314 KARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA-GRSGKAITFVTQY 372
Query: 457 --EELQFLRYLKAAKVPVKEYEFDQ 479
E Q + +L K+PV + D+
Sbjct: 373 DVELFQRIEHLIGKKLPVFPTQDDE 397
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 145/365 (39%), Positives = 216/365 (59%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF LG+SQ A Q +G+ ++IQ A+P + GKDV+G A TGSGKT AF IP ++
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L + P+ +V+ PTRELA Q + L +++GG +A +
Sbjct: 105 SLLDH---PQ-AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALA 160
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+ +++VATPGRL+DHL+NTKGF K LK L++DEADRIL +FE E+ +I+K++P+ +R
Sbjct: 161 RRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPR-ER 219
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
+T LFSAT TKKV L R S + P + V R K T + L+Q Y VP+ + L
Sbjct: 220 RTYLFSATMTKKVSKLERASLRD-PARVSVSS-RYK-TVDNLKQHYIFVPNKYKETYLVY 276
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
L + +VF ++C + + +LR + + +HG+ Q+KR + F + I
Sbjct: 277 LLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREI 336
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFL 462
L+CTDVAARGLDIP VD ++ YD P + K+Y+HRVGRTAR G G A+ + +++
Sbjct: 337 LVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARA-GRSGIAITVVTQYDVEAY 395
Query: 463 RYLKA 467
+ ++A
Sbjct: 396 QKIEA 400
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 150/382 (39%), Positives = 215/382 (56%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P
Sbjct: 49 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 108
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ L P+ +V+ PTRELA Q + L +++GG ++
Sbjct: 109 LNALLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 164
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P+
Sbjct: 165 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR- 223
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L
Sbjct: 224 DRKTFLFSATMTKKVQKLQRAALKN-PVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYL 280
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L M+F S+CN+ + + LLR + +HG+ Q KR + F +
Sbjct: 281 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 340
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP---E 457
ILL TDVA+RGLDIP VD +V +D P K+YIHRVGRTAR G G A+ F+ E
Sbjct: 341 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA-GRSGKAITFVTQYDVE 399
Query: 458 ELQFLRYLKAAKVPVKEYEFDQ 479
Q + +L K+PV + D+
Sbjct: 400 LFQRIEHLIGKKLPVFPTQDDE 421
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 149/375 (39%), Positives = 212/375 (56%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P
Sbjct: 23 TKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 82
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ L P+ +V+ PTRELA Q + L +++GG ++
Sbjct: 83 LNALLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P+
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR- 197
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKN-PVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYL 254
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L M+F S+CN+ + + LLR + +HG+ Q KR + F +
Sbjct: 255 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP---E 457
ILL TDVA+RGLDIP VD +V +D P K+YIHRVGRTAR G G A+ F+ E
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA-GRSGKAITFVTQYDVE 373
Query: 458 ELQFLRYLKAAKVPV 472
Q + +L K+PV
Sbjct: 374 LFQRIEHLIGKKLPV 388
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 149/375 (39%), Positives = 212/375 (56%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P
Sbjct: 23 TKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 82
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ L P+ +V+ PTRELA Q + L +++GG ++
Sbjct: 83 LNALLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P+
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR- 197
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKN-PVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYL 254
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L M+F S+CN+ + + LLR + +HG+ Q KR + F +
Sbjct: 255 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP---E 457
ILL TDVA+RGLDIP VD +V +D P K+YIHRVGRTAR G G A+ F+ E
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA-GRSGKAITFVTQYDVE 373
Query: 458 ELQFLRYLKAAKVPV 472
Q + +L K+PV
Sbjct: 374 LFQRIEHLIGKKLPV 388
>ASPGD|ASPL0000034540 [details] [associations]
symbol:spb4 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001306 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AACD01000052
HOGENOM:HOG000268803 KO:K14809 OMA:CACVEYW RefSeq:XP_660780.1
ProteinModelPortal:Q5B8F4 STRING:Q5B8F4
EnsemblFungi:CADANIAT00009893 GeneID:2873958 KEGG:ani:AN3176.2
OrthoDB:EOG46MFT3 Uniprot:Q5B8F4
Length = 638
Score = 437 (158.9 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 122/362 (33%), Positives = 191/362 (52%)
Query: 207 LVIGGSARRGE--AERIVKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILE 263
L++GGS E + + + NLLVATPGRLL+ L + + + + LV+DEADR+L+
Sbjct: 145 LLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEADRLLD 204
Query: 264 ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYI--------DVDDG 315
F+E ++ I++ LPK+ R+T LFSA+ ++ V+ + R+ + PV + VDD
Sbjct: 205 LGFKETLQNILRRLPKQ-RRTGLFSASVSEAVDQIVRVGLRN-PVKVVVKVKGASGVDDK 262
Query: 316 RTKVTNEGLQQGYCVVPSAKRFILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQ 373
RT + LQ Y P +F L L + K + F S+C+ V + S +L I
Sbjct: 263 RTPAS---LQMTYLTQPPTGKFPALKHILNSVQPTPSKSIFFVSTCSGVDYLSVILPLIL 319
Query: 374 VDCFDI---HGKQKQQKRTTTFFDFCKAEK-GILLCTDVAARGLDIPAVDWIVQYDPPDE 429
+ F + HGK R F F A ILL TDVA+RGLDIP+VD +VQ DPP +
Sbjct: 320 GNDFQLIPLHGKHPANVRQKNFNRFVNAHNPAILLTTDVASRGLDIPSVDLVVQIDPPSD 379
Query: 430 PKEYIHRVGRTARGEGARGNALLFLIP-EELQFLRYLKAAKVPVKEYEF-----DQKKLA 483
PK +IHR GR R G RG +++ L P E ++ +L+ K PV + D + A
Sbjct: 380 PKTFIHRCGRAGRA-GRRGLSVVLLHPGREEDYVSFLEVRKTPVAPFPHPITVSDAEAAA 438
Query: 484 NVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPP 543
++ K+V + ++ + A+ S++ +Y+ H IF V LD + + ++ P
Sbjct: 439 ATET-ARKVVKADRAIHDRGQKAFVSWLRSYSKHQASSIFRVADLDWEGLGKAWGLLKLP 497
Query: 544 KV 545
K+
Sbjct: 498 KM 499
Score = 202 (76.2 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 47/112 (41%), Positives = 68/112 (60%)
Query: 100 STTSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157
S+ ++D++ LS+ A+ MGF MT +QA A+P M KDV+ A TGSGKTL+FL
Sbjct: 10 SSRAWDAVNPPLSEWVLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFL 69
Query: 158 IPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV 208
IP VE LL + ++ G I++ PTRELA Q + V LL +H + ++
Sbjct: 70 IPVVEKLLRLEEPIKKHHVGAIIVSPTRELASQIYNVLTSLLAFHPASAAVI 121
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 146/372 (39%), Positives = 214/372 (57%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF LG++ A +G++ T+IQ A+P + G+D++G A TGSGKT AF +P ++
Sbjct: 26 SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L +A P+ +V+ PTRELA Q + L +++GG ++ +
Sbjct: 86 ALLDA---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALA 141
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P+ DR
Sbjct: 142 KKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPR-DR 200
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
+T LFSAT TK+V+ L R + + PV V V E LQQ Y +PS + L
Sbjct: 201 KTFLFSATMTKQVQKLQRAALKN-PVKCAVSSKYQTV--EKLQQYYIFIPSKFKDSYLVY 257
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
L M+F S+CN+ + + LLR + +HG+ Q KR + F + I
Sbjct: 258 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 317
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP---EEL 459
LL TDVA+RGLDIP VD ++ +D P K+YIHRVGRTAR G G ++ F+ E
Sbjct: 318 LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARA-GRSGKSITFVTQYDVELF 376
Query: 460 QFLRYLKAAKVP 471
Q + +L K+P
Sbjct: 377 QRIEHLIGKKLP 388
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 148/374 (39%), Positives = 211/374 (56%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P
Sbjct: 23 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 82
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ L P+ +V+ PTRELA Q + L +++GG ++
Sbjct: 83 LNALLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 138
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P+
Sbjct: 139 LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR- 197
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKN-PVKCAVSSKYQTV--EKLQQYYIFIPSKFKDTYL 254
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L M+F S+CN+ + + LLR + +HG+ Q KR + F +
Sbjct: 255 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP---E 457
ILL TDVA+RGLDIP VD +V +D P K+YIHRVGRTAR G G A+ F+ E
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA-GRSGKAITFVTQYDVE 373
Query: 458 ELQFLRYLKAAKVP 471
Q + +L K+P
Sbjct: 374 LFQRIEHLIGKKLP 387
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 148/399 (37%), Positives = 226/399 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + LS+ +AI +GF+ T IQ +P ++GKD+ A TG+GKT AF++P +E
Sbjct: 181 SFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLE 240
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L+Y + AP T V+V+ PTREL IQ H+V K L ++ S T L +GG + + +
Sbjct: 241 RLIYKPRQAPI--TRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAAL 298
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
G ++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I++L +
Sbjct: 299 RSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLC-SRH 357
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT LFSAT T++V+DLA +S + P I V+ T V Q+ + P+ + R +
Sbjct: 358 RQTMLFSATMTEEVKDLASVSLKN-PTRIFVNSN-TDVAPFLRQEFIRIRPNREGDREAI 415
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ + L R VM+F + LL + + ++HG Q +R F +
Sbjct: 416 VSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQ 475
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + EE
Sbjct: 476 IDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARA-GRAGRSVSLVGEEER 534
Query: 460 QFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
+ L+ + KAAK PVK Q + + +E L + Y
Sbjct: 535 KMLKEIVKAAKTPVKARILPQDVILKFREKIENLEKDVY 573
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 142/381 (37%), Positives = 217/381 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF LG+ A ++MG++ T IQ++A+P + G+DV+G A TGSGKT AF +P ++
Sbjct: 47 SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ 106
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L A P+ G +V+ PTRELA Q + L +++GG ++ +
Sbjct: 107 ALMEA---PQTLFG-LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALG 162
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
K +++VATPGRLLDHL+NTKGF +NLK L IDEADR+L+ +F E + +I+++LP+ R
Sbjct: 163 KKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRT-R 221
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
T LFSAT + KVE L R S + PV + V V+ LQ Y +P + + L
Sbjct: 222 HTYLFSATMSTKVESLQRASL-SNPVRVSVSSKYQTVST--LQSSYICIPHKHKNLYLVY 278
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
L + ++F ++ + + + +LR + +HG+ Q R F + I
Sbjct: 279 LLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDI 338
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ-F 461
L+ TDVAARGLDIP+VD + +D P + K YIHRVGRTAR G G A+ F+ +++ +
Sbjct: 339 LVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARA-GKSGVAISFVTQYDVEVW 397
Query: 462 LRYLKAAKVPVKEYEFDQKKL 482
LR A + EY+ ++ ++
Sbjct: 398 LRIEHALSKKLPEYQVEKDEV 418
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 148/399 (37%), Positives = 225/399 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + LS+ +AI MGF+ T IQ +P ++GKD+ A TG+GKT AF +P +E
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L+Y + AP T V+V+ PTREL IQ H+V K L ++ S T L +GG + + +
Sbjct: 248 RLIYKPRQAPV--TRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAAL 305
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I+++
Sbjct: 306 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHH 364
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT LFSAT T +V+DLA +S + PV I V+ T V Q+ + P+ + R +
Sbjct: 365 RQTMLFSATMTDEVKDLASVSLKN-PVRIFVNSN-TDVAPFLRQEFIRIRPNREGDREAI 422
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ + L R + VM+F + LL + + ++HG Q +R F +
Sbjct: 423 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 482
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + EE
Sbjct: 483 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARA-GRAGRSVSLVGEEER 541
Query: 460 QFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
+ L+ + KAAK PVK Q + + +EK+ + Y
Sbjct: 542 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 580
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 148/400 (37%), Positives = 223/400 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + LS+ +AI MGF+ T IQ +P ++GKD+ A TG+GKT AF +P +E
Sbjct: 185 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 244
Query: 163 LLYNAQFAPRNG--TGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
L + PR T V+V+ PTREL IQ H+V K L ++ S T L +GG + +
Sbjct: 245 RLI---YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAA 301
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ ++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I+++
Sbjct: 302 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SH 360
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFI 338
RQT LFSAT T +V+DLA +S + PV I V+ T V Q+ + P+ + R
Sbjct: 361 HRQTMLFSATMTDEVKDLASVSLKN-PVRIFVNSN-TDVAPFLRQEFIRIRPNREGDREA 418
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
++ + L R + VM+F + LL + + ++HG Q +R F
Sbjct: 419 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDE 478
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + EE
Sbjct: 479 QIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARA-GRAGRSVSLVGEEE 537
Query: 459 LQFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
+ L+ + KAAK PVK Q + + +EKL + Y
Sbjct: 538 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVY 577
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 143/367 (38%), Positives = 214/367 (58%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
++ LGL++ +A ++ ++ ++IQ A+P + GKDV+G A TGSGKT AF +P +
Sbjct: 62 TWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH 121
Query: 163 -LLYNAQ--FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
LL N Q FA +V+ PTRELA Q + L +V+GG +
Sbjct: 122 ALLENPQRYFA-------LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGL 174
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ K ++++ATPGRL+DHL+N KGF K +K LV+DEADRIL +FE E+ +I+K+LP+
Sbjct: 175 QLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPR 234
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+R+T LFSAT TKKV+ L R S + PV ++V + V E LQQ Y +P + +
Sbjct: 235 -ERRTFLFSATMTKKVKKLQRASLKD-PVKVEVSNKYQTV--EQLQQSYLFIPVKYKDVY 290
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L L M+F S+CN+ + +LR + + +HG+ Q KR F
Sbjct: 291 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN 350
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+ IL+ TDVA+RGLDIP VD +V +D P K+YIHRVGRTAR G G A+ + ++
Sbjct: 351 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA-GRSGKAITLVSQYDI 409
Query: 460 QFLRYLK 466
+ + ++
Sbjct: 410 ELYQRIE 416
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 148/400 (37%), Positives = 226/400 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGS-GKTLAFLIPAV 161
SF + LS+ +AI +GF+ T IQ +P ++GKD+ A TG+ GKT AF++P +
Sbjct: 181 SFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVL 240
Query: 162 E-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
E L+Y + AP T V+V+ PTREL IQ H+V K L ++ S T L +GG + +
Sbjct: 241 ERLIYKPRQAPI--TRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAA 298
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G ++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I++L +
Sbjct: 299 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLC-SR 357
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFI 338
RQT LFSAT T++V+DLA +S + P I V+ T V Q+ + P+ + R
Sbjct: 358 HRQTMLFSATMTEEVKDLASVSLKN-PTRIFVNSN-TDVAPFLRQEFIRIRPNREGDREA 415
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
++ + L R VM+F + LL + + ++HG Q +R F
Sbjct: 416 IVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDE 475
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + EE
Sbjct: 476 QIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARA-GRAGRSVSLVGEEE 534
Query: 459 LQFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
+ L+ + KAAK PVK Q + + +E L + Y
Sbjct: 535 RKMLKEIVKAAKTPVKARILPQDVILKFREKIENLEKDVY 574
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 146/399 (36%), Positives = 225/399 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + LS+ +AI MGF+ T IQ +P ++GKD+ A TG+GKT AF +P +E
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L+Y + +P T V+V+ PTREL IQ H+V K L ++ + T L +GG + + +
Sbjct: 248 RLIYKPRQSPV--TRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAAL 305
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I+++
Sbjct: 306 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHH 364
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT LFSAT T +V+DLA +S + PV I V+ T V Q+ + P+ + R +
Sbjct: 365 RQTMLFSATMTDEVKDLASVSLKN-PVRIFVNSN-TDVAPFLRQEFVRIRPNREGDREAI 422
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ + L R + VM+F + LL + + ++HG Q +R F +
Sbjct: 423 VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 482
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + EE
Sbjct: 483 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARA-GRAGRSVSLVGEEER 541
Query: 460 QFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
+ L+ + KAAK PVK Q + + +EK+ + Y
Sbjct: 542 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 580
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 146/399 (36%), Positives = 225/399 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + LS+ +AI MGF+ T IQ +P ++GKD+ A TG+GKT AF +P +E
Sbjct: 209 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 268
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L+Y + +P T V+V+ PTREL IQ H+V K L ++ + T L +GG + + +
Sbjct: 269 RLIYKPRQSPV--TRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAAL 326
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I+++
Sbjct: 327 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHH 385
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT LFSAT T +V+DLA +S + PV I V+ T V Q+ + P+ + R +
Sbjct: 386 RQTMLFSATMTDEVKDLASVSLKN-PVRIFVNSN-TDVAPFLRQEFVRIRPNREGDREAI 443
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ + L R + VM+F + LL + + ++HG Q +R F +
Sbjct: 444 VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 503
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + EE
Sbjct: 504 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARA-GRAGRSVSLVGEEER 562
Query: 460 QFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
+ L+ + KAAK PVK Q + + +EK+ + Y
Sbjct: 563 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 601
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 139/342 (40%), Positives = 197/342 (57%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P
Sbjct: 22 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 81
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ L P+ +V+ PTRELA Q + L +++GG ++
Sbjct: 82 LNALLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 137
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P+
Sbjct: 138 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR- 196
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L
Sbjct: 197 DRKTFLFSATMTKKVQKLQRAALKN-PVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYL 253
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L M+F S+CN+ + + LLR + +HG+ Q KR + F +
Sbjct: 254 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 313
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
ILL TDVA+RGLDIP VD +V +D P K+YIHRVGRTAR
Sbjct: 314 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 355
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 145/399 (36%), Positives = 225/399 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + LS+ +AI MGF+ T IQ +P ++GKD+ A TG+GKT AF +P +E
Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L+Y + AP T V+V+ PTREL IQ H+V + L ++ + T L +GG + + +
Sbjct: 279 RLIYKPRQAPV--TRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAAL 336
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I+++
Sbjct: 337 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHH 395
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT LFSAT T +V+DLA +S + PV I V+ T V Q+ + P+ + R +
Sbjct: 396 RQTMLFSATMTDEVKDLASVSLKN-PVRIFVNSN-TDVAPFLRQEFIRIRPNREGDREAI 453
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ + L R + VM+F + LL + + ++HG Q +R F +
Sbjct: 454 VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 513
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + +E
Sbjct: 514 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARA-GRAGRSVSLVGEDER 572
Query: 460 QFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
+ L+ + KAAK PVK Q + + +EK+ + Y
Sbjct: 573 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 611
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 149/415 (35%), Positives = 231/415 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F + LS+ +AI MGF+ T IQ VP ++GKD+ A TG+GKT AF++P +E
Sbjct: 202 TFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLE 261
Query: 163 LLYNAQFAPRNG--TGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
L + PR T V+V+ PTREL IQ H VA+ L ++ + + L +GG + +
Sbjct: 262 RLI---YKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAA 318
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G ++L+ATPGRL+DHL NT F ++ L++DEADR+L+ FEE+M++I+++ +
Sbjct: 319 LRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQ 378
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFI 338
RQT LFSAT +++V+DLA +S + PV I V+ T V Q+ + P+ + R
Sbjct: 379 -RQTMLFSATMSEEVKDLASVSLKQ-PVRIFVNSN-TDVAPYLRQEFVRIRPNKEGDREA 435
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
++ + L R VM+F + LL + + ++HG Q +R + F
Sbjct: 436 IVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDE 495
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++ + E
Sbjct: 496 QIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARA-GKVGRSVSLVGETE 554
Query: 459 LQFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVANNYY---LNKSAKDAYRS 509
+ L+ + K AK PVK Q+ + + +EKL + Y L K K+ S
Sbjct: 555 RKMLKEIVKKAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEKEEKEMAHS 609
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 553 (199.7 bits), Expect = 9.4e-57, Sum P(2) = 9.4e-57
Identities = 134/377 (35%), Positives = 213/377 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F L LS+ RA + +G++ T IQA +P + G+D+ +A TGSGKT AF +P +E
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 163 LLYNAQFAPRN--GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
L F P+ T V+++ PTRELA+Q H++ ++L ++ GL++GG + R E E
Sbjct: 228 RLL---FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVR-EQEV 283
Query: 221 IVKGV-NLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+++ + +++VATPGR++DHL+N+ +L L++DEADR+L+ F E+ ++++L PK
Sbjct: 284 VLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPK 343
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP---SAKR 336
+ RQT LFSAT T++V++L +LS P+ + D + GL + + A +
Sbjct: 344 R-RQTMLFSATMTEEVKELVKLSLNK-PLRLSADPSARRPP--GLTEEVVRIRRTREANQ 399
Query: 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
+L S R KV++F + + L + ++HG Q +R + F
Sbjct: 400 EAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFR 459
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
K E L+ TDVAARGLDI V ++ Y P E Y+HRVGRTAR G G A+ F+
Sbjct: 460 KQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARA-GREGYAVTFVTD 518
Query: 457 EELQFLRYLKAAKVPVK 473
+ L+ + A KV K
Sbjct: 519 SDRSLLKVI-AKKVGSK 534
Score = 50 (22.7 bits), Expect = 9.4e-57, Sum P(2) = 9.4e-57
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 557 RKKTRKVEGSRNGFSESNPYGRQRDEDDK 585
RKK RK+E +R E N G + +ED++
Sbjct: 651 RKKRRKLEAARE-MLEDNE-GEEEEEDEE 677
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 138/373 (36%), Positives = 215/373 (57%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF S+ LS+ R + +GF T IQ++ +P ++GKDV+G A TGSGKT AF++P +E
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 315
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LLY + P + V+++ PTRELAIQ HAVA L + L +GG + + + +
Sbjct: 316 RLLYRPKKVPTSR--VVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESEL 373
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++++ATPGR +DH++N+ F ++ LV+DEADR+LE F +E+ +I+ LPK
Sbjct: 374 RLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKS- 432
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFILL 340
RQT LFSAT T V++L R+ PV + VD + V L Q + + P + +
Sbjct: 433 RQTMLFSATMTSSVDNLIRVGLNK-PVRLMVDSQKKTVVT--LTQEFVRLRPGREEKRMG 489
Query: 341 YS-FLKRNL-SKKVMVFFSSCNSVKFHSELL-RYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
Y +L +NL +++V++FF + H+ ++ + + C ++HG Q +R + F
Sbjct: 490 YLVYLCKNLYTERVIIFFRQ-KKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRD 548
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL-LFLIP 456
+ LL TD+A+RGLDI VD ++ Y+ P + Y+HRVGRTAR G G A+ L P
Sbjct: 549 GKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARA-GRSGTAITLAAEP 607
Query: 457 EELQFLRYLKAAK 469
+ +KA K
Sbjct: 608 DRKVVKAAVKAGK 620
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 150/406 (36%), Positives = 226/406 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F LG+ + +A + +G++ ++IQA A+P + GKDV+G A+TGSGKT AF IP ++
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 163 LL--YNAQFAPRNGTG------VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214
L Y P+ G V+ PTRELAIQ + L S +++GG R
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 215 RGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIM 274
+ + K +++VATPGRL DH+ +TKGF K+LK LV+DEADR+L +FE+ + QI+
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189
Query: 275 KLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA 334
+ +P +R+T LFSAT TKKV L R + PV I+ + V + L+Q Y V +
Sbjct: 190 EEIPL-ERKTFLFSATMTKKVRKLQRACLRN-PVKIEAASKYSTV--DTLKQQYRFVAAK 245
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+ L L M+F +C+ +F + +LR + I G+ Q KR
Sbjct: 246 YKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNK 305
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F E IL+CTDVA+RGLDIP+VD ++ YD P K+YIHRVGRTAR G G + +
Sbjct: 306 FKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARA-GRSGVGISLV 364
Query: 455 IPEELQ-FLRYLKAAKVPVKEYEFDQKKLANVQSHL---EKLVANN 496
EL+ +++ K + EY ++ ++ ++ + +KL A N
Sbjct: 365 NQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMN 410
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 132/361 (36%), Positives = 205/361 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF +LGLS +A+ + G+ + IQA+A+P ++ GKDV+ AA+TG+GKT F +P +E
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
LL A T +V+ PTRELA Q + KY +V GG + ++
Sbjct: 62 LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLR 121
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
GV++LVATPGRLLD +Q + L+ LV+DEADR+L+ F ++++I+ LLP K R
Sbjct: 122 HGVDVLVATPGRLLDLVQQN-AVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAK-R 179
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
Q +FSAT + ++ +LA+ PV I V T ++Q C V ++ LL
Sbjct: 180 QNLMFSATFSDEIRELAK-GLVNHPVEISVTPRNAAATT--VKQWICPVDKTQKSALLIQ 236
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
+K+ ++V+VF + + ++ L ++ IHG + Q RT DF E +
Sbjct: 237 LIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRV 296
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFL 462
L+ TD+AARGLDI + +V +D P+ P++Y+HR+GRT R GA G A+ + EE++ L
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRA-GATGQAVSLVSSEEIKLL 355
Query: 463 R 463
+
Sbjct: 356 K 356
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 140/379 (36%), Positives = 209/379 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F LG+ A + +GF+ T IQ A+P ++ +DV+G A+TGSGKT AF +P ++
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L+N +P +V+ PTRELA Q + + +++GG +A +
Sbjct: 107 ELWNNP-SP---FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALS 162
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
K ++LV TPGRL+DHL+NTKGF KNLK L++DEADR+L+ +F + +I+K++P +R
Sbjct: 163 KKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPH-ER 221
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
+T LFSAT T KVE L R S PV + V + V + L Q Y P + L
Sbjct: 222 RTLLFSATMTSKVEKLQRASLHQ-PVRVAVSSKFSTV--DTLIQRYLFFPFKHKDTYLVY 278
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
+ +++F + N + + LLR + +HG+ Q R F +
Sbjct: 279 LVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARST 338
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ-F 461
L+ TDVAARGLDIP VD ++ YD P + K YIHRVGRTAR G G ++ + +L+ F
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA-GRAGKSIALVTQYDLEPF 397
Query: 462 LRYLKAAKVPVKEYEFDQK 480
LR ++EYE D++
Sbjct: 398 LRIEATIGKKMQEYEIDKE 416
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 142/396 (35%), Positives = 220/396 (55%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S SF L L +A +++ + T IQ++A+PP + G D++G A+TGSGKT AF IP
Sbjct: 79 SFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIP 138
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+ L++ Q P ++ PTRELA Q L ++GG +A
Sbjct: 139 ILNRLWHDQ-EPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQAR 194
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+++ ++++ATPGRL+DHL+NTKGF + LK LV+DEADR+L+ F + +I+K++P
Sbjct: 195 DLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT 254
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA-KRFI 338
++R T LFSAT T K++ L R S T PV V + V + L Q VVP K
Sbjct: 255 QERTTYLFSATMTSKIDKLQRASL-TNPVKCAVSNKYQTV--DTLVQTLMVVPGGLKNTY 311
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
L+Y L + K +++F + + + S L ++ +HG Q +R + F
Sbjct: 312 LIY-LLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAG 370
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
++ IL+ TDVAARGLDIP+VD +V YD P + K YIHRVGRTAR G G ++ + +
Sbjct: 371 KRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARA-GRSGKSISLVSQYD 429
Query: 459 LQFLRYLKAA---KVPVKEYEFDQKKLANVQSHLEK 491
L+ + ++ K+P KE D+ + ++ ++K
Sbjct: 430 LELILRIEEVLGKKLP-KE-SVDKNIILTLRDSVDK 463
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 148/420 (35%), Positives = 228/420 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+SLG+ A +GF +IQ ++P + G+D++G A+TGSGKT AF+IP ++
Sbjct: 120 TFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQ 179
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEA 218
L A P+ G + + PTRELA Q +A D T+G+ ++GG ++
Sbjct: 180 KLLEA---PQ-GLFCLALAPTRELAYQ---IA-DQFNAIGSTIGVKTCVLVGGIDSMSQS 231
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ K +++V +PGR+L HL++TKGF +++K ++DEADR+ A+FEEE+ I+K++P
Sbjct: 232 LALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIP 291
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI 338
K +R T LFSAT T KV L R S PV + V + + + LQQ Y VP +
Sbjct: 292 K-ERNTYLFSATMTSKVAKLQRASL-VNPVKVQVAS-KYQTVDTLLQQ-YLFVPFKYKDC 347
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
L L ++F S+C S + +LR + I+G Q KR + F +
Sbjct: 348 YLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQG 407
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
K IL+ TDVAARGLDIP+VD ++ YD P KEY+HRVGRTAR G G A+ + +
Sbjct: 408 TKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARA-GNSGRAITIVTQYD 466
Query: 459 LQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHS 518
++ Y + V K+ + + V LE++ + KD ++Y + + HS
Sbjct: 467 VEM--YQRIEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKD--KNYSSSSDRHS 522
>POMBASE|SPBC24C6.02 [details] [associations]
symbol:SPBC24C6.02 "ATP-dependent RNA helicase Spb4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC24C6.02 GO:GO:0005524 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
OMA:CACVEYW OrthoDB:EOG46MFT3 PIR:T39966 RefSeq:NP_595956.1
ProteinModelPortal:O74764 STRING:O74764 EnsemblFungi:SPBC24C6.02.1
GeneID:2540598 KEGG:spo:SPBC24C6.02 NextBio:20801723 Uniprot:O74764
Length = 606
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 157/480 (32%), Positives = 246/480 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF S+ + + A+ GF+ MT +QA A+P + KD++ A TGSGKTLA+L+P +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVG----LV----IGGSAR 214
+ G G +++ PTRELA Q V K+LL Y ++ LV IGG
Sbjct: 62 KVTRRD-TDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 215 RGE--AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQ 272
A K ++++ TPGRL + L + K+L+ L++DEAD +++ F+ ++
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQS 177
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKV---TNEGLQQGYC 329
I+ LPK+ R+T LFSAT V +++ V + V K+ T L
Sbjct: 178 IISQLPKQ-RRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSL 236
Query: 330 VVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK-FHSELLRY-IQVDCFDIHGKQKQQK 387
V+P + + L +K +VFFSSC SV+ F+S L Y + + +HG+Q Q
Sbjct: 237 VIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSN 296
Query: 388 RTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGA 446
R+ F F K+ +K +L TD+A+RGLDIP VD+++Q DPP +PK + HR GR R G
Sbjct: 297 RSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRA-GR 355
Query: 447 RGNALLFLIP-EELQFLRYLKAAKVPVKEYE-----FDQKKLANVQSHLEKLVANNYYLN 500
G A++ L E ++ L+ KVP+ + D +L + L K+V+ + L
Sbjct: 356 AGVAIVLLNDGREEEYEELLRVRKVPITRIDTPIEALDLSRLKVLTHELRKIVSKDRDLY 415
Query: 501 KSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASK--FRK 558
A+ S++ AY H IF + LDL +A ++ PK+ D+ S+ F+K
Sbjct: 416 DKGLRAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYALLHLPKMPELKDTEISENIFKK 475
>WB|WBGene00013983 [details] [associations]
symbol:ZK512.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0017038 "protein import" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:Z22177 eggNOG:COG0513 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809 PIR:B88549 PIR:S40763
RefSeq:NP_001254980.1 ProteinModelPortal:P34640 SMR:P34640
STRING:P34640 PaxDb:P34640 EnsemblMetazoa:ZK512.2a.1
EnsemblMetazoa:ZK512.2a.2 GeneID:176292 KEGG:cel:CELE_ZK512.2
UCSC:ZK512.2 CTD:176292 WormBase:ZK512.2
GeneTree:ENSGT00550000074969 InParanoid:P34640 OMA:HEKKVET
NextBio:891956 Uniprot:P34640
Length = 578
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 138/437 (31%), Positives = 236/437 (54%)
Query: 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVI 178
D ++ T +Q + L+ DV+ + TGSGKTLAF++P + ++ NA+ P + G +
Sbjct: 26 DKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPAD-IGAL 84
Query: 179 VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLD 237
++ P+REL Q +V + + + TV V GG + K VN+LVATPGRL
Sbjct: 85 ILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQ 144
Query: 238 HLQNTKGFI---YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294
+Q+ K I + L+ LVIDEADR E FE+ MR+I+ +PK+ R+T LFSATQ K+
Sbjct: 145 IIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQ-RRTGLFSATQVKE 203
Query: 295 VEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMV 354
+DL + + V R L+ Y + ++ + F+++ KK+++
Sbjct: 204 EDDLMVFGLRNAK-QVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILI 262
Query: 355 FFSSCNSVKFHSELL-RYI-QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARG 412
FF SCNSV++ ++ R + + F +HGK R + F + G+++ TDV ARG
Sbjct: 263 FFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARG 322
Query: 413 LDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL-KAAKVP 471
+DI +DW++Q+D P ++HR GRTAR G GNAL+ + E+L ++ +L KV
Sbjct: 323 IDISDIDWVIQFDLPKHSSWFVHRAGRTARC-GREGNALILIASEQLAYVNFLDNHEKVK 381
Query: 472 VKEYEF---DQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRL 528
+ E + + +K ++ + K+ ++ + ++ A+ S++ +Y H I ++ L
Sbjct: 382 LDEIKVPTNNSRKSEELRQKMIKIQVSDRAILEAGTRAFVSHVESYAKHDCHLICSLDDL 441
Query: 529 DLQAVAASFCFSSPPKV 545
++ +A S+ PK+
Sbjct: 442 NVVGLANSYALLRLPKM 458
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 136/380 (35%), Positives = 221/380 (58%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+SL LS+ + + +G+ + IQ+ +P ++GKD++ A TGSGKT AF+IP +E
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291
Query: 163 -LLYN-AQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ-TVGLVIGGSARRGEAE 219
LLY A+ A T VIV+ PTRELAIQ V K + ++ S T GL +GG R + +
Sbjct: 292 RLLYKPAKIA---STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQ 348
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ ++++ATPGR +DH++N+ F +++ LV+DEADR+LE F++E+ +IM LLP
Sbjct: 349 MLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPS 408
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF-- 337
+RQ LFSAT K++ L LS + PV I +D + T L Q + +
Sbjct: 409 -NRQNLLFSATMNSKIKSLVSLSLKK-PVRIMIDPPKKAATK--LTQEFVRIRKRDHLKP 464
Query: 338 ILLYSFLKR---NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
LL++ +++ K+++VF + + ++ + + ++HG Q++R +
Sbjct: 465 ALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNK 524
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F E +L+CTD+A+RGLDIP ++ ++ YD P + Y+HRVGRTAR G G ++ F
Sbjct: 525 FKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA-GREGRSVTF- 582
Query: 455 IPEELQFLRYLKAAKVPVKE 474
+ E Q ++AA V+E
Sbjct: 583 VGESSQDRSIVRAAIKSVEE 602
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 143/417 (34%), Positives = 230/417 (55%)
Query: 83 KINVKKSXXXXXXXXIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDV 142
KI V +S +F+ L LS+ +A+Q +GF T IQA+A+P + GKD+
Sbjct: 171 KIKVLQSNRKLKKIVEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDI 230
Query: 143 LGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202
L +A TGSGKT AFL+P +E L R V+++ PTRELA+Q +V ++L ++ +
Sbjct: 231 LASASTGSGKTAAFLLPVLERLLFRDSEYR-AIRVLILLPTRELALQCQSVMENLAQFSN 289
Query: 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262
T L++GG + + + + K ++++ATPGRL+DHL N G +L+ L++DEADR+L
Sbjct: 290 ITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLL 349
Query: 263 EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNE 322
+ F++E+ +I++ P +RQT LFSAT +V+ LA+LS Q P+ + VD +VT+
Sbjct: 350 DMGFKDEINKIVESCPT-NRQTMLFSATLNDEVKTLAKLSLQQ-PIRVQVD-ALMQVTST 406
Query: 323 GLQQGYCVVPS--AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI----QVDC 376
Q+ + P + R +L S R ++ + F C S K LR I +
Sbjct: 407 LEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIF--CRSKK-EVHRLRIIFGLSDLKA 463
Query: 377 FDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHR 436
++HG Q++R + F + LL +DVA+RGLDI V ++ Y+ P+ YIHR
Sbjct: 464 AELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHR 523
Query: 437 VGRTARGEGARGNALLFLIPEELQFLR-YLKAAKVPVKEYEFDQKKLANVQSHLEKL 492
VGRTAR G G + F+ + + L+ + A+ K Q + ++ +E+L
Sbjct: 524 VGRTARA-GMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQDNVNFWRNRIEEL 579
>ASPGD|ASPL0000028276 [details] [associations]
symbol:AN5623 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001305
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268799
ProteinModelPortal:C8VFX5 EnsemblFungi:CADANIAT00003447 OMA:STIGKMG
Uniprot:C8VFX5
Length = 567
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 152/420 (36%), Positives = 228/420 (54%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGK-DVLGAARTGSGKTLAFLIPAVELLYNA 167
L Q +A+ +GF++M+ +Q R + L + D L A+TG+GKT+AFL+PA+ L
Sbjct: 18 LDQKLLQALNVLGFEYMSPVQQRVLTELPTWRSDCLVQAKTGTGKTVAFLLPALHCLIQG 77
Query: 168 QFAPRNG-TGVIVICPTRELAIQTHAVAKDLLKYHSQTVG--LVIGGSARRGEAERIVKG 224
Q R G +++I PTRELA Q +L S+ + + +GG+AR R + G
Sbjct: 78 QSQVRRGQVAILIITPTRELAQQIAKSCDELTSQLSRPLECHIAVGGTARASAHSRFMNG 137
Query: 225 -VNLLVATPGRLLDHLQNTK-GFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
++LVATPGRL D+L ++ K+++ LV+DEAD +LE F +++QI+KL+P K
Sbjct: 138 DPSILVATPGRLKDYLSESETAEKLKDIQTLVLDEADTMLETGFLADVKQILKLIPSKST 197
Query: 283 --QTALFSATQTKKVEDLARLSFQTTPVYIDVD--DGRTKVTNEGLQQGYCVVPS-AKRF 337
Q FSAT KV+D+ +S P Y + D T+E + Q Y ++PS A+ F
Sbjct: 198 GWQGMCFSATLPPKVKDV--VSVVLNPGYTSISTVDKNEPPTHERVPQYYVLMPSVAETF 255
Query: 338 ILLYSFLKRNLSK--KVMVFFSSCNSVKF-HSELLRYIQ-VDCFDIHGKQKQQKRTTTFF 393
L S L K K++VF + N V HS + + F+IH + Q RT T
Sbjct: 256 TTLSSLLAHESKKNTKIIVFGVTANMVALSHSAFANGLTPLKVFEIHSRLSQSARTRTTS 315
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
F +A+ GIL +DV RG+D P VD +VQ P ++Y+HRVGRTAR G G A++
Sbjct: 316 QFKEADAGILFASDVIGRGMDFPNVDLVVQVGLPSNAEQYVHRVGRTARA-GNDGRAVIL 374
Query: 454 LIPEELQFLRYLKAAK-VPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKD-AYRSYI 511
L E F +LKA + +P++ + LAN S + Y ++++ K AY SYI
Sbjct: 375 LTESE-SF--FLKANRHLPIQPHPDASSILANATSCSPAVTQAMYAVDETTKQRAYSSYI 431
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 538 (194.4 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 128/363 (35%), Positives = 205/363 (56%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LGLS+ +A++D G++ + IQA+A+P ++ G+DV+ AA+TG+GKT F +P +
Sbjct: 6 TKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLL 65
Query: 162 ELLYNAQF--APRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+ L +++ N +++ PTRELA Q + KY + +V GG +
Sbjct: 66 QRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIA 125
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
R+ +GV++LVATPGRLLD L N + + L+ ++DEADR+L+ F +++++M LPK
Sbjct: 126 RLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPK 184
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
DRQ LFSAT + ++ LA+ P+ I VD + T E + Q V ++ +
Sbjct: 185 -DRQNLLFSATFSPEIRALAK-GMVNNPLEISVDAENS--TAEKVTQWLTAVDKKRKPAV 240
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L +K N ++V+VF + + ++ L + IHG + Q RT F
Sbjct: 241 LTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGS 300
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TD+AARG+DI + +V +D P+ P++Y+HR+GRTAR G G AL + +EL
Sbjct: 301 VKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARA-GNTGQALSLVCADEL 359
Query: 460 QFL 462
L
Sbjct: 360 DLL 362
Score = 38 (18.4 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 436 RVGRTARGEGARGN 449
R GR A G A GN
Sbjct: 422 RSGRNANGNNAGGN 435
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 148/404 (36%), Positives = 222/404 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + LS+ +AI MGF+ T IQ +P ++GKD+ A TG+GKT AF +P +E
Sbjct: 212 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 271
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV----GLVIGG-SARRG 216
L+Y + AP T V+V+ PTREL IQ H+V K L + + GL GG +
Sbjct: 272 RLIYKPRQAPV--TRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISGLFAGGLDVKSQ 329
Query: 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276
EA ++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I+++
Sbjct: 330 EAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 389
Query: 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK- 335
RQT LFSAT T +V+DLA +S + PV I V+ T V Q+ + P+ +
Sbjct: 390 C-SLHRQTMLFSATMTDEVKDLASVSLKN-PVRIFVNSN-TDVAPFLRQEFIRIRPNREG 446
Query: 336 -RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTT-TFF 393
R ++ + L R + VM+F + LL + + ++HG Q +R +
Sbjct: 447 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLEALW 506
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
F + IL+ TDVAARGLDI V ++ + P+ K Y+HRVGRTAR G G ++
Sbjct: 507 RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARA-GRAGRSVSL 565
Query: 454 LIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
L +E+ +KAAK PVK Q + + +EK+ + Y
Sbjct: 566 L--KEI-----VKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 602
>TAIR|locus:2054688 [details] [associations]
symbol:AT2G07750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AC004483 IPI:IPI00546939 PIR:E84488
RefSeq:NP_178818.1 UniGene:At.52694 ProteinModelPortal:O80792
SMR:O80792 PaxDb:O80792 PRIDE:O80792 EnsemblPlants:AT2G07750.1
GeneID:815422 KEGG:ath:AT2G07750 GeneFarm:994 TAIR:At2g07750
InParanoid:O80792 OMA:FRKTALK PhylomeDB:O80792
ProtClustDB:CLSN2713541 Genevestigator:O80792 GermOnline:AT2G07750
Uniprot:O80792
Length = 845
Score = 560 (202.2 bits), Expect = 8.6e-54, P = 8.6e-54
Identities = 153/461 (33%), Positives = 253/461 (54%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157
I S FD +S T +A+ G MT++Q + + GKD L A+TG+GK++AFL
Sbjct: 371 IYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 430
Query: 158 IPAVELLYNAQFAPRNGTGV--------IVICPTRELAIQTHAVAKDLLKYHSQT-VGLV 208
+PA+E + A +G GV +++CPTRELA Q A K LLK H V +
Sbjct: 431 LPAIETVLKAM---NSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTL 487
Query: 209 IGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYK--NLKCLVIDEADRILEAN 265
IGG+ R + +R+ + +L+ATPGRLLDH++N G + LK ++DEAD +L+
Sbjct: 488 IGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLG 547
Query: 266 FEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQ 325
F+ ++ +I+ LP++ RQ+ LFSAT K+V +++L + YID T++ ++
Sbjct: 548 FKRDVEKIIDCLPRQ-RQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVK 606
Query: 326 QGYCVVPSAKRFILLYSFLKRNLSK----KVMVFFSSCNSVKFHSELLRYIQVDCFDIHG 381
Q V P F L+ LK +++ K++VF S+ LLR ++++ +IH
Sbjct: 607 QSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHA 666
Query: 382 KQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTA 441
++ Q RT +F ++ + IL+ +DV+ARG++ P V ++Q P + ++YIHR+GRT
Sbjct: 667 RKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTG 726
Query: 442 RGEGARGNALLFLIPEELQFLRYLKAAKV-PVKEYEFDQKKLANVQSHLEKLVANNYYLN 500
R EG G LL + P E FL LK + P+ + D + V+ +++ +A ++
Sbjct: 727 R-EGKGGKGLLLIAPWERYFLDELKDLPLEPIPAPDLDSR----VKHQVDQSMAK---ID 778
Query: 501 KSAKDA-YRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFS 540
S K+A Y +++ YNS +++ + L +A FC S
Sbjct: 779 TSIKEAAYHAWLGYYNS--VRETGR-DKTTLAELANRFCHS 816
>TAIR|locus:2038431 [details] [associations]
symbol:AT1G63250 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 EMBL:AC022355 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 UniGene:At.52694 ProtClustDB:CLSN2713541
IPI:IPI00538833 PIR:C96658 RefSeq:NP_176514.1 UniGene:At.36158
ProteinModelPortal:Q9C8S9 SMR:Q9C8S9 PaxDb:Q9C8S9 PRIDE:Q9C8S9
EnsemblPlants:AT1G63250.1 GeneID:842631 KEGG:ath:AT1G63250
GeneFarm:1027 TAIR:At1g63250 InParanoid:Q9C8S9 OMA:TSSRAHI
PhylomeDB:Q9C8S9 Genevestigator:Q9C8S9 GermOnline:AT1G63250
Uniprot:Q9C8S9
Length = 798
Score = 557 (201.1 bits), Expect = 8.8e-54, P = 8.8e-54
Identities = 150/458 (32%), Positives = 252/458 (55%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157
I S FD +S T +A+ G MT++Q + + GKD L A+TG+GK++AFL
Sbjct: 324 IYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 383
Query: 158 IPAVELLYNAQFAPRNGTGV-----IVICPTRELAIQTHAVAKDLLKYHSQT-VGLVIGG 211
+PA+E + A + + V +++CPTRELA Q A K LLK+H V +IGG
Sbjct: 384 LPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGG 443
Query: 212 SARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYK--NLKCLVIDEADRILEANFEE 268
+ + + +R+ + +L+ATPGRLLDH++N G + LK ++DEAD +L+ F
Sbjct: 444 TRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRR 503
Query: 269 EMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGY 328
++ +I+ LP++ RQ+ LFSAT K+V +++L + YID T++ ++Q
Sbjct: 504 DVEKIIDCLPRQ-RQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSC 562
Query: 329 CVVPSAKRFILLYSFLKRNLSK----KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQK 384
V P F L+ LK +++ K++VF S+ LLR ++++ +IH ++
Sbjct: 563 IVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKP 622
Query: 385 QQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGE 444
Q RT +F ++ + IL+ +DV+ARG++ P V ++Q P + ++YIHR+GRT R E
Sbjct: 623 QLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGR-E 681
Query: 445 GARGNALLFLIPEELQFLRYLKAAKV-PVKEYEFDQKKLANVQSHLEKLVANNYYLNKSA 503
G G LL + P E FL LK + P+ + D + V+ +++ +A ++ S
Sbjct: 682 GKGGEGLLLIAPWERYFLDELKDLPLEPIPAPDLD----SIVKHQVDQSMAK---IDTSI 734
Query: 504 KDA-YRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFS 540
K+A Y +++ YNS +++ + L +A FC S
Sbjct: 735 KEAAYHAWLGYYNS--VRETGR-DKTTLAELANRFCHS 769
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 548 (198.0 bits), Expect = 7.3e-53, P = 7.3e-53
Identities = 133/377 (35%), Positives = 216/377 (57%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
TSF + LS+ RAI +G+ + T IQA +P ++G+D+ G A TG+GKT A+++P +
Sbjct: 157 TSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTL 216
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E L + T V+V+ PTREL Q + V K L ++ + VGL IGG + + +
Sbjct: 217 ERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVL 276
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+ ++++ATPGRL+DH++NT F +++ L++DEADR+L+ F E+M++I+ K
Sbjct: 277 RQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT- 335
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK---RFI 338
RQT LFSAT +++V+DLA +S P+ + V++ + N L+Q + + K R
Sbjct: 336 RQTMLFSATMSEQVKDLAAVSLDK-PIKVFVNNNQQVAFN--LRQEFIRIREDKEGDREP 392
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSV-KFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
+L S + R MVF + + H LL + V ++HG QQ+R + F +
Sbjct: 393 ILASLICRTFHDHCMVFVQTKKQAHRLHI-LLGLLGVRAGELHGNLTQQQRLESLKKFKE 451
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ +L+ TDVAARGLDI V ++ + P + YIHRVGRTAR G G ++ +
Sbjct: 452 EQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARA-GRAGISVSLAGEK 510
Query: 458 ELQFLR-YLKAAKVPVK 473
E + ++ +K A+ +K
Sbjct: 511 ERKIVKDIIKNAESTIK 527
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 521 (188.5 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 130/363 (35%), Positives = 204/363 (56%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F S+GLS F+ I G++ T IQ + +P ++ GKDV+ ARTGSGKT FL+P E
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L A+ A + G +++ PTRELA+QT K+L K+ L++GG + + +
Sbjct: 157 L-KARSA-QTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 214
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++++ATPGRL+ H+ ++++ +V DEADR+ E F E++++I+ LP Q
Sbjct: 215 NPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPG-GHQ 272
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFILLYS 342
T LFSAT K + + AR T PV I +D +K+ NE L+ + +V K +LLY
Sbjct: 273 TVLFSATLPKLLVEFARAGL-TEPVLIRLDVD-SKL-NEQLKTSFLLVREDTKAAVLLY- 328
Query: 343 FLKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L +N+ + + +VF ++ + ++ +ELL V C I+ Q R F +
Sbjct: 329 -LLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNK 387
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
L+ TD+AARGLDIP +D ++ Y P + K ++HRVGR AR G G A + P+E+
Sbjct: 388 CSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARA-GRSGTAYSLVAPDEV 446
Query: 460 QFL 462
+L
Sbjct: 447 PYL 449
Score = 55 (24.4 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 499 LNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAA----SFCFSSPPKVNLTIDSSAS 554
L++ A +A + Y+ + + S + I LDL + S CF L + S
Sbjct: 509 LHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLRLVDSIK 568
Query: 555 KFRKKTRKVE---GSRNGFSESNPYGRQRD 581
+R +T E S++ S+ RQRD
Sbjct: 569 NYRTRTTIFEINASSKDPSSQMMRAKRQRD 598
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 156/489 (31%), Positives = 239/489 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGL A+ D+G++ + IQA +P L+ G+DVLG A+TGSGKT AF +P +
Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVI--GGSARRGEAE 219
+ L AP+ ++V+ PTRELA+Q D K H + V +V GG +
Sbjct: 66 QNLDPELKAPQ----ILVLAPTRELAVQVAEAMTDFSK-HMRGVNVVALYGGQRYDVQLR 120
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ +G ++V TPGRLLDHL+ +G + L LV+DEAD +L F E++ IM +P
Sbjct: 121 ALRQGPQIVVGTPGRLLDHLK--RGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI 338
+ QTALFSAT + + + R F P + + T T + Q Y V ++
Sbjct: 179 E-GHQTALFSATMPEAIRRITR-RFMKEPQEVRIQSSVT--TRPDISQSYWTVWGMRKNE 234
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
L FL+ ++F + N+ +E L + ++G Q R T
Sbjct: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
IL+ TDVAARGLD+ + +V YD P + + Y+HR+GRT R G G ALLF+ E
Sbjct: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA-GRAGRALLFVENRE 353
Query: 459 LQFLRYL-KAAKVPVKEYEFDQKKLANVQSHLEKLVAN-NYYLNKSAKDAYRSYILAYNS 516
+ LR + + K+ + E E +L + LEK A L S D YR+ +
Sbjct: 354 RRLLRNIERTMKLTIPEVELPNAELLG-KRRLEKFAAKVQQQLESSDLDQYRALL----- 407
Query: 517 HSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPY 576
++ LDL+ +AA+ + + L + A K+ + R G + N
Sbjct: 408 SKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR-GPRDRNDR 466
Query: 577 GRQRDEDDK 585
G + D +D+
Sbjct: 467 GPRGDREDR 475
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 527 (190.6 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 131/363 (36%), Positives = 203/363 (55%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F S+GLS F+ I G++ T IQ + +P ++ GKDV+ ARTGSGKT FLIP E
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + + G +++ PTRELA+QT K+L K+ L++GG + + +
Sbjct: 158 LKT--HSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 215
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++++ATPGRL+ H+ ++++ +V DEADR+ E F E++++I+ LP Q
Sbjct: 216 NPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPG-GHQ 273
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFILLYS 342
T LFSAT K + + AR T PV I +D +K+ NE L+ + +V AK +LL+
Sbjct: 274 TVLFSATLPKLLVEFARAGL-TEPVLIRLDVD-SKL-NEQLKTSFFLVREDAKAAVLLH- 329
Query: 343 FLKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L RN+ + + +VF ++ + ++ SELL V C I+ Q R F +
Sbjct: 330 -LLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGK 388
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
L+ TD+AARGLDIP +D ++ Y P + K ++HRVGR AR G G A + P+E+
Sbjct: 389 CSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARA-GRSGTAYSLVAPDEV 447
Query: 460 QFL 462
+L
Sbjct: 448 PYL 450
Score = 45 (20.9 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 20/97 (20%), Positives = 39/97 (40%)
Query: 499 LNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSS----PPKVNLTIDSSAS 554
L++ A +A + Y+ + + S + I LDL + FSS L + S
Sbjct: 508 LSRVANNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRFQQEELQRLRLVDSIR 567
Query: 555 KFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVRY 591
+R + E + + S+ R + E D++ +
Sbjct: 568 NYRSRATIFEINASSRDLSSQVMRAKREKDRKAIASF 604
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 127/366 (34%), Positives = 201/366 (54%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F L L+ +AI++ G++ T IQA A+PP + G+DVLG A+TG+GKT +F +P +
Sbjct: 2 TKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI 61
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + R +V+CPTRELA Q K+ T L+IGG + + + I
Sbjct: 62 TLLARGRARARMPRS-LVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALI 120
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV++L+ATPGRLLDH + K + ++ +V+DEADR+L+ F ++ +I L P
Sbjct: 121 DRGVDVLIATPGRLLDHFERGK-LLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFT- 178
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF---- 337
RQT FSAT ++E + +F + P I+V R +E ++QG + ++R
Sbjct: 179 RQTLFFSATMAPEIERITN-TFLSAPARIEV--ARQATASETIEQGVVLFKGSRRDREAS 235
Query: 338 ---ILLYSFLKRNLSK--KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTF 392
+L + + K ++F + V ++ L+ D IHG Q +RT T
Sbjct: 236 EKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTL 295
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL 452
F + + +L+ +DVAARGLD+P+V + +D P P++Y+HR+GRT R G G A+
Sbjct: 296 DGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRA-GRDGKAIT 354
Query: 453 FLIPEE 458
IP +
Sbjct: 355 LCIPRD 360
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 148/456 (32%), Positives = 235/456 (51%)
Query: 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLY----NAQFAPRNGT 175
MGF+ MT +QA +P L KDV+ + TGSGKT AF+IP +E + N +
Sbjct: 25 MGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHF 84
Query: 176 GVIVICPTRELAIQTHAVAKDLLKYHSQTV-----GLVIGGSAR--RGEAERIVKG-VNL 227
++I PTREL+ Q +V L+++ + L++G + R + ++ +
Sbjct: 85 HSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQI 144
Query: 228 LVATPGRLLDHLQNTKGFIYKNLKC--LVIDEADRILEANFEEEMRQIMKLLPKKDRQTA 285
L+ TPGR+LD LQ K C +V+DEADR+L+ +F ++ +I++LLPK+ R+T
Sbjct: 145 LIGTPGRVLDFLQMPA---VKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ-RRTG 200
Query: 286 LFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLK 345
LFSAT D+ + + PV I V+ ++ L+ YCVV A++ LL S L
Sbjct: 201 LFSATMRSAGSDIFKTGLRN-PVRITVNSKNQAPSS--LKLNYCVVNPAEKLQLLVSILN 257
Query: 346 RNLSKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFFDFCK 397
KK +V+F +C SV + ++Y+ +V+ F +HGK + RT T F
Sbjct: 258 NYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTD 317
Query: 398 A-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ +L TDVAARG+DIP VD ++Q DPP ++HR GRT R G A+ FL
Sbjct: 318 SLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRV-GKAITFLNE 376
Query: 457 -EELQFLRYLKAAKVPVKEYEFDQKKLA-NVQSHLEK-LVANNYYLNKSAKDAYRSYILA 513
E F+ +++ V ++E + + K + N ++ + +K K AY ++I
Sbjct: 377 GREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRDRFDKGVK-AYVAFIKY 435
Query: 514 YNSHSMKDIFNVHRLDLQAVAASF-CFSSPPKVNLT 548
Y++HS IF + LD +A + F P +T
Sbjct: 436 YSNHSATSIFRLQSLDYVGIAKLYGLFRLPRMPEIT 471
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 517 (187.1 bits), Expect = 7.5e-52, Sum P(2) = 7.5e-52
Identities = 130/363 (35%), Positives = 204/363 (56%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F S+GLS F+ I G++ T IQ + +P ++ GKDV+ ARTGSGKT FL+P E
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L A+ A + G +++ PTRELA+QT K+L K+ L++GG + + +
Sbjct: 157 L-KARSA-QTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 214
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++++ATPGRL+ H+ ++++ +V DEADR+ E F E++++I+ LP Q
Sbjct: 215 NPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPG-GHQ 272
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFILLYS 342
T LFSAT K + + AR T PV I +D +K+ NE L+ + +V K +LLY
Sbjct: 273 TVLFSATLPKLLVEFARAGL-TEPVLIRLDVD-SKL-NEQLKTSFFLVREDTKTAVLLY- 328
Query: 343 FLKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L +N+ + + +VF ++ + ++ +ELL V C I+ Q R F +
Sbjct: 329 -LLQNVVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNK 387
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
L+ TD+AARGLDIP +D ++ Y P + K ++HRVGR AR G G A + P+E+
Sbjct: 388 CSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARA-GRSGTAYSLVAPDEV 446
Query: 460 QFL 462
+L
Sbjct: 447 PYL 449
Score = 53 (23.7 bits), Expect = 7.5e-52, Sum P(2) = 7.5e-52
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 499 LNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAA----SFCFSSPPKVNLTIDSSAS 554
L + A +A + Y+ + + S + I LDL + S CF L + S
Sbjct: 509 LQRVANNAQQQYLRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLRLVDSIK 568
Query: 555 KFRKKTRKVE---GSRNGFSESNPYGRQRD 581
+R +T E S++ S+ RQRD
Sbjct: 569 NYRTRTTIFEINASSKDPSSQMMRAKRQRD 598
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 541 (195.5 bits), Expect = 1.3e-51, P = 1.3e-51
Identities = 131/362 (36%), Positives = 207/362 (57%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F S+GLS ++ I G++ T IQ + +P ++ GKDV+ ARTGSGKT AFL+P E
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L Q + G +++ PTRELA+QT K+L K+ L++GG + + + +
Sbjct: 140 LKAPQ--AQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHE 197
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++++ TPGRL+ H+ ++++ +V DEADR+ E F E++++I++ LP RQ
Sbjct: 198 NPDIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDA-RQ 255
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
T LFSAT K + + AR T PV I +D TK++ + + + K +LL+
Sbjct: 256 TLLFSATLPKLIVEFARAGL-TEPVLIRLDVD-TKLSEQLKLSFFSLRLDDKPALLLH-- 311
Query: 344 LKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L RN+ K + +VF ++ + V++ ELL VDC I+ Q R + F +
Sbjct: 312 LLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKV 371
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
+LL TDVAARG+DIP +D ++ Y+ P +PK ++HRVGR AR G G A + P+E+
Sbjct: 372 MLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARA-GRGGTAYSLVCPDEVP 430
Query: 461 FL 462
+L
Sbjct: 431 YL 432
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 134/375 (35%), Positives = 209/375 (55%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F SLGLS +AI++ G+ + IQ +A+P ++ GKDV+ AA+TG+GKT F +P +EL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY--HSQTVGLVI-GGSARRGEAER 220
L N +++ PTRELA Q + +++ Y H V+ GG + +R
Sbjct: 63 LAKGPKVRANQVRALILTPTRELAAQ---IQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ KG ++LVATPGRL+D L N + L+ LV+DEADR+L+ F ++ +I+KLLP+K
Sbjct: 120 MCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS--AKRFI 338
RQ LFSAT + ++ +LA+ PV I V + T ++Q C+ P+ K+
Sbjct: 179 -RQNLLFSATFSTEIRELAK-GLVNNPVEISVSPANS--TARTVEQ--CIYPADVKKKPD 232
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
+L +K ++V+VF + + + L + IHG + Q RT DF
Sbjct: 233 MLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAG 292
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR-GEGARGNALLFLIPE 457
E IL+ TD+AARG+DIP + +V ++ P ++Y+HR+GRT R GE + +L+ I
Sbjct: 293 EVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA 352
Query: 458 -ELQFLRYLKAAKVP 471
EL + L A +P
Sbjct: 353 PELFAIERLTQALLP 367
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 134/375 (35%), Positives = 209/375 (55%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F SLGLS +AI++ G+ + IQ +A+P ++ GKDV+ AA+TG+GKT F +P +EL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY--HSQTVGLVI-GGSARRGEAER 220
L N +++ PTRELA Q + +++ Y H V+ GG + +R
Sbjct: 63 LAKGPKVRANQVRALILTPTRELAAQ---IQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ KG ++LVATPGRL+D L N + L+ LV+DEADR+L+ F ++ +I+KLLP+K
Sbjct: 120 MCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS--AKRFI 338
RQ LFSAT + ++ +LA+ PV I V + T ++Q C+ P+ K+
Sbjct: 179 -RQNLLFSATFSTEIRELAK-GLVNNPVEISVSPANS--TARTVEQ--CIYPADVKKKPD 232
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
+L +K ++V+VF + + + L + IHG + Q RT DF
Sbjct: 233 MLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAG 292
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR-GEGARGNALLFLIPE 457
E IL+ TD+AARG+DIP + +V ++ P ++Y+HR+GRT R GE + +L+ I
Sbjct: 293 EVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA 352
Query: 458 -ELQFLRYLKAAKVP 471
EL + L A +P
Sbjct: 353 PELFAIERLTQALLP 367
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 130/395 (32%), Positives = 218/395 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F LGL+ + MG T +QA +PP++ G+D LG A+TGSGKT AF++P ++
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+L + G +V+ PTRELA Q + L K +V+GG +A +
Sbjct: 63 VLSEDPY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELS 118
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPK 279
+ ++++ATPGRL DHL+++ F K LK LV+DEADR+LE A+F ++ I++ +P
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPA 178
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR--F 337
+ RQT LFSAT T + +L L+ P + + + +E L Q Y +VP A + +
Sbjct: 179 R-RQTLLFSATLTDTLNELKSLAMNR-PFFWEAAS-EVRTVDE-LDQRYLLVPEAVKDAY 234
Query: 338 I--LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
+ L+ +F + +++F +C + + +LR +H KQ++R F
Sbjct: 235 LVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKF 294
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
+ IL+ TDVAARGLDIP V ++ ++ P PK YIHRVGRTAR G G ++ +
Sbjct: 295 KSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRNGISITMVT 353
Query: 456 PEELQFLRYLKAA-KVPVKEYEFDQKKLANVQSHL 489
++ + ++ K+ ++E+ ++K + ++ +H+
Sbjct: 354 QYDIHLVHAIEEEIKLKLQEFSVEEKLVLDILTHV 388
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 130/395 (32%), Positives = 218/395 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F LGL+ + MG T +QA +PP++ G+D LG A+TGSGKT AF++P ++
Sbjct: 6 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 65
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+L + G +V+ PTRELA Q + L K +V+GG +A +
Sbjct: 66 VLSEDPY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELS 121
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPK 279
+ ++++ATPGRL DHL+++ F K LK LV+DEADR+LE A+F ++ I++ +P
Sbjct: 122 RKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPA 181
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR--F 337
+ RQT LFSAT T + +L L+ P + + + +E L Q Y +VP A + +
Sbjct: 182 R-RQTLLFSATLTDTLNELKSLAMNR-PFFWEAAS-EVRTVDE-LDQRYLLVPEAVKDAY 237
Query: 338 I--LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
+ L+ +F + +++F +C + + +LR +H KQ++R F
Sbjct: 238 LVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKF 297
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
+ IL+ TDVAARGLDIP V ++ ++ P PK YIHRVGRTAR G G ++ +
Sbjct: 298 KSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRNGISITMVT 356
Query: 456 PEELQFLRYLKAA-KVPVKEYEFDQKKLANVQSHL 489
++ + ++ K+ ++E+ ++K + ++ +H+
Sbjct: 357 QYDIHLVHAIEEEIKLKLQEFSVEEKLVLDILTHV 391
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 536 (193.7 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 131/372 (35%), Positives = 203/372 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF LS+ R + + F T IQ + +P ++GKD++G+A TGSGKT AF++P +E
Sbjct: 299 SFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 358
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL+ + P + V ++ PTRELA+Q + VA L Y T ++GG + R + +
Sbjct: 359 RLLFRPRKVPTSR--VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVL 416
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K ++++ATPGR +DH++N+ F L+ LV+DEADR+LE F +E+ +I+ +PK
Sbjct: 417 KKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS- 475
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGR-TKVTNEGLQQGYCVVPSA--KRFI 338
RQT LFSAT T V+ L R+ PV + VD + T VT +Q+ + P KR
Sbjct: 476 RQTMLFSATMTDSVDKLIRVGLNR-PVRLMVDTKKNTAVTL--VQEFVRLRPGREDKRLG 532
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
L K + +V+VFF + + + ++HG Q++R + F
Sbjct: 533 YLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDG 592
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
LL TD+A+RGLDI V+ ++ Y+ P + Y+HRVGRTAR G G A +
Sbjct: 593 NVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARA-GRSGRACTIAAEPD 651
Query: 459 LQFLRY-LKAAK 469
+ ++ +KA K
Sbjct: 652 RKVVKAAVKAGK 663
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 125/362 (34%), Positives = 205/362 (56%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGL +A+ ++G+Q T IQ +A+P ++ GK+VL AA+TG+GKT +F++P +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 164 LYNA-QFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+A + P+ +I + PTRELA+Q KY T + GG + +R++
Sbjct: 63 FADAPKIRPKRVRSII-LTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLI 121
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+GV+LLVATPGRLLD + + + + LV+DEADR+L+ F E++ I++ LP++ R
Sbjct: 122 EGVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ-R 179
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
Q LFSAT +K+V+ LA+ + P I+++ R + + Q V ++ LL
Sbjct: 180 QNLLFSATLSKQVKALAKTAI---PDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSH 236
Query: 343 FLKRNLSKKVMVFFSSCN-SVKFHSEL-LRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
+K N + ++F + + + K S+L R I + F H + Q R DF +
Sbjct: 237 LIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAF--HSGRSQAIREQLLIDFKAGKV 294
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
L+ T V +RG+DI A++ ++ YD PDE +YIHR+GRT R G +G A+ F+ ++ +
Sbjct: 295 PFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRA-GNQGEAISFVSKDDFR 353
Query: 461 FL 462
L
Sbjct: 354 NL 355
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 125/362 (34%), Positives = 205/362 (56%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGL +A+ ++G+Q T IQ +A+P ++ GK+VL AA+TG+GKT +F++P +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 164 LYNA-QFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+A + P+ +I + PTRELA+Q KY T + GG + +R++
Sbjct: 63 FADAPKIRPKRVRSII-LTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLI 121
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+GV+LLVATPGRLLD + + + + LV+DEADR+L+ F E++ I++ LP++ R
Sbjct: 122 EGVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ-R 179
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
Q LFSAT +K+V+ LA+ + P I+++ R + + Q V ++ LL
Sbjct: 180 QNLLFSATLSKQVKALAKTAI---PDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSH 236
Query: 343 FLKRNLSKKVMVFFSSCN-SVKFHSEL-LRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
+K N + ++F + + + K S+L R I + F H + Q R DF +
Sbjct: 237 LIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAF--HSGRSQAIREQLLIDFKAGKV 294
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
L+ T V +RG+DI A++ ++ YD PDE +YIHR+GRT R G +G A+ F+ ++ +
Sbjct: 295 PFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRA-GNQGEAISFVSKDDFR 353
Query: 461 FL 462
L
Sbjct: 354 NL 355
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 504 (182.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 129/392 (32%), Positives = 211/392 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGL + + +G + T IQ + +P ++ G+D +GAA+TGSGKT AF +P +E
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEAE 219
L + +V+ PT ELA Q +++ L Q +G+ V GG+ + E++
Sbjct: 69 LSEEPVSHF----ALVLTPTHELAYQ---ISEQFL-VAGQAMGVRVCVVSGGTDQMVESQ 120
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++++ +++VA PGRL DHL F + NLK LV+DEADR+L +F+E + I + LPK
Sbjct: 121 KLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPK 180
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
RQ FSAT +++ + F + T E L Q Y + R ++
Sbjct: 181 T-RQNLFFSATMKDFIKESS--IFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMV 237
Query: 340 LYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
L L++ N + VM+F ++ + S L+ +++D +HG +Q++R F
Sbjct: 238 LIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRF 297
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL-LFL 454
+ L+ TDVAARGLDIP+V+ ++ + P PKEYIHRVGRTAR G +G ++ +F
Sbjct: 298 KSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARA-GRKGMSISIFR 356
Query: 455 IPEELQFLRYLKAA-KVPVKEYEFDQKKLANV 485
P +L+ L ++ + E+ DQ+ + +
Sbjct: 357 FPRDLELLAAIEEEINTKLTEHPIDQRMVERI 388
Score = 41 (19.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 546 NLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
N D A +R+KT +EG E+ Y R++ +D R+ R
Sbjct: 405 NNDFDERAQNYRRKTWIMEGKDPDQMEAL-Y-RKKQKDKLREIRR 447
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 128/389 (32%), Positives = 209/389 (53%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S T+F+ LGL++ +++G + T +Q VP ++ G+DVLG A+TGSGKT AF +P
Sbjct: 56 SATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP 115
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+ L + G +V+ PTRELA Q K L + +++GG +
Sbjct: 116 ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTM 171
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGF--IYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+V ++++ TPGR+ L+N ++ K LV+DEADR+L+ F++E+R I + L
Sbjct: 172 SLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCL 231
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
PK RQT LFSAT T ++ L S Y + +G K + QQ AK
Sbjct: 232 PKS-RQTLLFSATMTSNLQALLEHSSNKAYFY-EAYEG-LKTVDTLTQQFIFEDKDAKEL 288
Query: 338 ILLY--SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
L++ S ++ + M+F S+C + + S +L ++V+ +H Q R + F
Sbjct: 289 YLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKF 348
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
+ ILL TDVA+RGLDIP VD ++ YD P +P++Y+HRVGRTAR G G A+ +
Sbjct: 349 KSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARA-GRGGLAVSIIT 407
Query: 456 PEELQFLRYLKAAKVPVKEYEFDQKKLAN 484
+++ + ++ +V K +++K + +
Sbjct: 408 ETDVKLIHKIEE-EVGKKMEPYNKKVITD 435
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 151/483 (31%), Positives = 234/483 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLS ++++ MGF+ T IQA +P + GKD++G A+TG+GKT AF +P
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-- 59
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + G IVI PTRELAIQ + K+ + + GG + +
Sbjct: 60 -LLDKVDTHKESVQG-IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +++V TPGR+LDH+ N K +N++ +V+DEAD +L F E++ I+ +P+
Sbjct: 118 KKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT + +A F T P +I V +VT +QQ Y V K+F +L
Sbjct: 176 HQTLLFSATMPDPIRRIAE-RFMTEPQHIKVK--AKEVTMPNIQQFYLEVQEKKKFDVLT 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L + +VF + V SE L IHG Q KR + F +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G +G A+LF+ P E
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKKGIAMLFVTPRESGQ 351
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ ++ K D L ++L+A + ++ + LAY ++
Sbjct: 352 LKNIERT-TKRKMDRMDAPTLDEALEGQQRLIA------EKLQNTIENENLAYYKRIAEE 404
Query: 522 IFNVH-RLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGR 578
+ + + + A A P + + S + ++K G+ G+ + N R
Sbjct: 405 MLEENDSVTVVAAALKMMTKEPDTTPIALTSEPPVVARGGGSKKRGGNGGGYRDGNR-NR 463
Query: 579 QRD 581
RD
Sbjct: 464 SRD 466
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 126/386 (32%), Positives = 207/386 (53%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
MS +F+ LGL+ + +GF+ + IQA +P ++ G+D++ +A+TGSGKT +F I
Sbjct: 1 MSDKTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAI 60
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
P + L + G +++ PTRELA+Q + + +VIGG +A
Sbjct: 61 PILNQLSEDPY----GVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQA 116
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ K +++VATPGRL HL N K K LV+DEADR+L +FE E+ I++ LP
Sbjct: 117 LILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLP 176
Query: 279 KKD-RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
+ RQT LFSAT TK + L ++ ++ +D T + L+Q Y +P+ +
Sbjct: 177 PPEKRQTLLFSATMTKNLTKLDSIALNKPFIF---EDNSKYDTVDTLKQEYIYMPAPTKD 233
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L LK++ +VF ++C +V+ +L + + +H Q+ R F
Sbjct: 234 CYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKS 293
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ +L+ TDVA+RGLDIP V ++ Y + K+YIHRVGRTAR G G A+ F+ P
Sbjct: 294 GKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARF-GRSGRAISFITPH 352
Query: 458 ELQFLRYLKAA-KVPVKEYEFDQKKL 482
++ ++ ++ K ++ Y+ D ++
Sbjct: 353 DVSLIKGIEEIIKKQLELYKTDDDEV 378
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 151/482 (31%), Positives = 233/482 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLS ++++ MGF+ T IQA +P + GKD++G A+TG+GKT AF +P
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-- 59
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + G IVI PTRELAIQ + K+ + + GG + +
Sbjct: 60 -LLDKVDTHKESVQG-IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +++V TPGR+LDH+ N K +N++ +V+DEAD +L F E++ I+ +P+
Sbjct: 118 KKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT + +A F T P +I V +VT +QQ Y V K+F +L
Sbjct: 176 HQTLLFSATMPDPIRRIAE-RFMTEPQHIKVK--AKEVTMPNIQQFYLEVQEKKKFDVLT 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L + +VF + V SE L IHG Q KR + F +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G +G A+LF+ P E
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKKGIAMLFVTPRESGQ 351
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ ++ K D L ++L+A L + ++ +Y +++
Sbjct: 352 LKNIERT-TKRKMDRMDAPTLDEALEGQQRLIAEK--LQSTIENENLAYYKRIAEEMLEE 408
Query: 522 IFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGRQ 579
+V + A A P + + S + ++K G+ G+ + N R
Sbjct: 409 NDSV---TVVAAALKMMTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNR-NRS 464
Query: 580 RD 581
RD
Sbjct: 465 RD 466
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 151/482 (31%), Positives = 233/482 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLS ++++ MGF+ T IQA +P + GKD++G A+TG+GKT AF +P
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-- 59
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + G IVI PTRELAIQ + K+ + + GG + +
Sbjct: 60 -LLDKVDTHKESVQG-IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +++V TPGR+LDH+ N K +N++ +V+DEAD +L F E++ I+ +P+
Sbjct: 118 KKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT + +A F T P +I V +VT +QQ Y V K+F +L
Sbjct: 176 HQTLLFSATMPDPIRRIAE-RFMTEPQHIKVK--AKEVTMPNIQQFYLEVQEKKKFDVLT 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L + +VF + V SE L IHG Q KR + F +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G +G A+LF+ P E
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKKGIAMLFVTPRESGQ 351
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ ++ K D L ++L+A L + ++ +Y +++
Sbjct: 352 LKNIERT-TKRKMDRMDAPTLDEALEGQQRLIAEK--LQSTIENENLAYYKRIAEEMLEE 408
Query: 522 IFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGRQ 579
+V + A A P + + S + ++K G+ G+ + N R
Sbjct: 409 NDSV---TVVAAALKMMTKEPDTTPIALTSEPPVVARGGGSKKRGGNGGGYRDGNR-NRS 464
Query: 580 RD 581
RD
Sbjct: 465 RD 466
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 151/482 (31%), Positives = 233/482 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLS ++++ MGF+ T IQA +P + GKD++G A+TG+GKT AF +P
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-- 59
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + G IVI PTRELAIQ + K+ + + GG + +
Sbjct: 60 -LLDKVDTHKESVQG-IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +++V TPGR+LDH+ N K +N++ +V+DEAD +L F E++ I+ +P+
Sbjct: 118 KKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT + +A F T P +I V +VT +QQ Y V K+F +L
Sbjct: 176 HQTLLFSATMPDPIRRIAE-RFMTEPQHIKVK--AKEVTMPNIQQFYLEVQEKKKFDVLT 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L + +VF + V SE L IHG Q KR + F +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G +G A+LF+ P E
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKKGIAMLFVTPRESGQ 351
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ ++ K D L ++L+A L + ++ +Y +++
Sbjct: 352 LKNIERT-TKRKMDRMDAPTLDEALEGQQRLIAEK--LQSTIENENLAYYKRIAEEMLEE 408
Query: 522 IFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGRQ 579
+V + A A P + + S + ++K G+ G+ + N R
Sbjct: 409 NDSV---TVVAAALKMMTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNR-NRS 464
Query: 580 RD 581
RD
Sbjct: 465 RD 466
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 151/482 (31%), Positives = 233/482 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLS ++++ MGF+ T IQA +P + GKD++G A+TG+GKT AF +P
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-- 59
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + G IVI PTRELAIQ + K+ + + GG + +
Sbjct: 60 -LLDKVDTHKESVQG-IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +++V TPGR+LDH+ N K +N++ +V+DEAD +L F E++ I+ +P+
Sbjct: 118 KKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT + +A F T P +I V +VT +QQ Y V K+F +L
Sbjct: 176 HQTLLFSATMPDPIRRIAE-RFMTEPQHIKVK--AKEVTMPNIQQFYLEVQEKKKFDVLT 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L + +VF + V SE L IHG Q KR + F +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G +G A+LF+ P E
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKKGIAMLFVTPRESGQ 351
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ ++ K D L ++L+A L + ++ +Y +++
Sbjct: 352 LKNIERT-TKRKMDRMDAPTLDEALEGQQRLIAEK--LQSTIENENLAYYKRIAEEMLEE 408
Query: 522 IFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGRQ 579
+V + A A P + + S + ++K G+ G+ + N R
Sbjct: 409 NDSV---TVVAAALKMMTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNR-NRS 464
Query: 580 RD 581
RD
Sbjct: 465 RD 466
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 151/482 (31%), Positives = 233/482 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLS ++++ MGF+ T IQA +P + GKD++G A+TG+GKT AF +P
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-- 59
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + G IVI PTRELAIQ + K+ + + GG + +
Sbjct: 60 -LLDKVDTHKESVQG-IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +++V TPGR+LDH+ N K +N++ +V+DEAD +L F E++ I+ +P+
Sbjct: 118 KKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT + +A F T P +I V +VT +QQ Y V K+F +L
Sbjct: 176 HQTLLFSATMPDPIRRIAE-RFMTEPQHIKVK--AKEVTMPNIQQFYLEVQEKKKFDVLT 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L + +VF + V SE L IHG Q KR + F +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G +G A+LF+ P E
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKKGIAMLFVTPRESGQ 351
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ ++ K D L ++L+A L + ++ +Y +++
Sbjct: 352 LKNIERT-TKRKMDRMDAPTLDEALEGQQRLIAEK--LQSTIENENLAYYKRIAEEMLEE 408
Query: 522 IFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGRQ 579
+V + A A P + + S + ++K G+ G+ + N R
Sbjct: 409 NDSV---TVVAAALKMMTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNR-NRS 464
Query: 580 RD 581
RD
Sbjct: 465 RD 466
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 151/482 (31%), Positives = 233/482 (48%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLS ++++ MGF+ T IQA +P + GKD++G A+TG+GKT AF +P
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-- 59
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
LL + G IVI PTRELAIQ + K+ + + GG + +
Sbjct: 60 -LLDKVDTHKESVQG-IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +++V TPGR+LDH+ N K +N++ +V+DEAD +L F E++ I+ +P+
Sbjct: 118 KKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT + +A F T P +I V +VT +QQ Y V K+F +L
Sbjct: 176 HQTLLFSATMPDPIRRIAE-RFMTEPQHIKVK--AKEVTMPNIQQFYLEVQEKKKFDVLT 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L + +VF + V SE L IHG Q KR + F +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G +G A+LF+ P E
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKKGIAMLFVTPRESGQ 351
Query: 462 LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKD 521
L+ ++ K D L ++L+A L + ++ +Y +++
Sbjct: 352 LKNIERT-TKRKMDRMDAPTLDEALEGQQRLIAEK--LQSTIENENLAYYKRIAEEMLEE 408
Query: 522 IFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGRQ 579
+V + A A P + + S + ++K G+ G+ + N R
Sbjct: 409 NDSV---TVVAAALKMMTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNR-NRS 464
Query: 580 RD 581
RD
Sbjct: 465 RD 466
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 515 (186.3 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 127/363 (34%), Positives = 201/363 (55%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F S+GLS F+ I G++ T IQ + +P ++ GKDV+ ARTGSGKT FL+P E
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + + G +++ PTRELA+QT K+L K+ L++GG + + +
Sbjct: 158 LKT--HSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHE 215
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++++ATPGRL+ H+ ++++ +V DEADR+ E F E++++I+ LP Q
Sbjct: 216 NPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPG-GHQ 273
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFILLYS 342
T LFSAT K + + AR T PV I +D TK+ NE L+ + +V K +LL+
Sbjct: 274 TVLFSATLPKLLVEFARAGL-TEPVLIRLDVD-TKL-NEQLKTSFFLVREDTKAAVLLH- 329
Query: 343 FLKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L N+ + + +VF ++ + ++ +ELL +V C I+ R F +
Sbjct: 330 -LLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGK 388
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
L+ TD+AARGLDIP +D ++ Y P + K ++HRVGR AR G G A + P+E+
Sbjct: 389 CSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARA-GRSGTAYSLVAPDEI 447
Query: 460 QFL 462
+L
Sbjct: 448 PYL 450
Score = 39 (18.8 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 24/95 (25%), Positives = 43/95 (45%)
Query: 427 PDEPKEYIHRVGRTARGEGAR-----GNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKK 481
P PK++ G + GEG A+L L+ +E Q L + ++ ++D+KK
Sbjct: 683 PYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNLTRGR------QQLKWDRKK 736
Query: 482 LANV----QSHLEKL-VANNYYLNKSAK-DAYRSY 510
V Q +K+ + Y++ S K D Y+ +
Sbjct: 737 KRFVGQSGQEDKKKIKTESGRYISSSYKRDLYQKW 771
Score = 37 (18.1 bits), Expect = 4.6e-50, Sum P(2) = 4.6e-50
Identities = 18/97 (18%), Positives = 38/97 (39%)
Query: 499 LNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSS----PPKVNLTIDSSAS 554
L + A +A + Y+ + + S + I +DL + FSS L + S
Sbjct: 508 LARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRFEEEELQRLRLVDSIK 567
Query: 555 KFRKKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVRY 591
+R + E + + + R + + D++ R+
Sbjct: 568 NYRSRATIFEINASSRDLCSQVMRAKRQKDRKAIARF 604
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 129/363 (35%), Positives = 204/363 (56%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SFDSLGLS RA+ + G++ T IQ +A+P ++ G+D++ +A+TG+GKT F +P ++
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 163 LLYNAQ--FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
L Q R +++ PTRELA Q +D KY + +V GG + + +
Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ GV++LVATPGRLLD L++ ++ LV+DEADR+L+ F ++R+++ LP K
Sbjct: 122 LRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQ LFSAT + ++ LA P+ I+V R +++ Q + V KR +L
Sbjct: 181 -RQNLLFSATFSDDIKALAEKLLHN-PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLS 237
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
+ K N ++V+VF + + +E L + IHG + Q RT DF +
Sbjct: 238 HMIGKGNW-QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
+L+ TD+AARGLDI + +V Y+ P+ P++Y+HR+GRT R A G AL + +E +
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA-AATGEALSLVCVDEHK 355
Query: 461 FLR 463
LR
Sbjct: 356 LLR 358
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 124/365 (33%), Positives = 204/365 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF+ + LS+ +A G+ T IQ +P + GKD+ A TG+GKT AF++P +E
Sbjct: 149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 208
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
++Y + A + T V+V+ PTRELAIQ V + L + V L GG + + +
Sbjct: 209 RMIYRPKGA--SCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAAL 266
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
G +++VATPGRL+DHL N+ F N++ LV+DEADR+LE F ++M ++++L + +
Sbjct: 267 RSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQ-N 325
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK---RFI 338
RQT LFSAT T+++++LA +S Q PV I +++ L+Q + + + + R
Sbjct: 326 RQTLLFSATMTEEIDELASMSLQK-PVKIFINENTDTALK--LRQEFIRIRAGRETDREA 382
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
++ + + R +VF + + LL + + + Q +R + F KA
Sbjct: 383 MVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKA 442
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
E +L+ TD+A+RGLDI V ++ + P K+YIHRVGRTAR G G ++ + +E
Sbjct: 443 EIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARA-GKAGRSISLVGEDE 501
Query: 459 LQFLR 463
+ L+
Sbjct: 502 RKLLK 506
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 136/414 (32%), Positives = 225/414 (54%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
M+T F LG+ + +Q M + T +QA +P ++ G D+LG ARTG+GKTLAF I
Sbjct: 86 MTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAI 145
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
P ++ L + G +++ PTRELA Q L K + +++GG + +A
Sbjct: 146 PILQKLSVDPY----GIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQA 201
Query: 219 ERIVKGVNLLVATPGRLLDHLQN---TKGFIYKNLKCLVIDEADRILEANFEEEMRQIMK 275
+ + +++VATPGRL D +++ T ++K ++ V+DEADR+LE + ++++ I +
Sbjct: 202 RELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFE 261
Query: 276 LLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRT-KVTNEGLQQGYCVVPSA 334
+ +K RQT L SAT T + L R+S T Y D G+ + T + L+Q Y V P A
Sbjct: 262 SISEK-RQTLLLSATITNNINMLHRVS--TRKPYFFEDKGKDDESTVDRLEQKYVVCPVA 318
Query: 335 -KRFILLY---SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTT 390
K L+Y ++ ++N VM+F +C + + + + +H + Q++R
Sbjct: 319 VKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLA 378
Query: 391 TFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNA 450
F +++CTDVA+RGLDIP VD +V ++ P PK YIHRVGR+AR G G+A
Sbjct: 379 ALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARA-GRFGSA 437
Query: 451 LLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAK 504
L F+ +++ L+ ++ +V K+ D+ K++ H+ K V K A+
Sbjct: 438 LSFVTQYDVELLQAVE--QVIGKK--LDELKVS--PKHVTKYVTQVLVAKKEAE 485
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 527 (190.6 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 142/411 (34%), Positives = 219/411 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
TS+ GLS T I +G++ T IQA+A+P + G+DV+G A+TGSGKT+AFL+P
Sbjct: 418 TSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMF 477
Query: 162 ELLYNAQFAPRNGTG--VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+ + Q + G G I++ PTRELA+Q K LK + GG+ + +
Sbjct: 478 RHIKD-QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKC--LVIDEADRILEANFEEEMRQIMKLL 277
+ +G ++V TPGR++D L G + +C LV+DEADR+ + FE ++ +I+ +
Sbjct: 537 DLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
+ DRQT LFSAT + +E LAR + PV I V GR+ V +E ++Q V P +F
Sbjct: 597 -RPDRQTVLFSATFPRAMEALARKVLKK-PVEITVG-GRSVVASE-VEQIVEVRPEESKF 652
Query: 338 ILLYSFL----KRNLSKKVMVFFSSCNSVK-FHSELLRYIQVDCFDIHGKQKQQKRTTTF 392
L L L + +VF S S+L++ IHG + Q R +T
Sbjct: 653 SRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSN-SIHGGKDQHDRDSTI 711
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL 452
D+ +L+ T V ARGLD+ ++ +V YD P+ ++Y+HRVGRT R G G A+
Sbjct: 712 SDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRA-GHTGVAVT 770
Query: 453 FLIPEELQFL----RYLKAAKVPV-KEYE-FDQKKLANVQSHLEKLVANNY 497
F+ PE+ ++ + LK +K PV KE + + L V++ EK +
Sbjct: 771 FITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGF 821
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 133/373 (35%), Positives = 203/373 (54%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157
IMS F SLGL+ ++ G+ T IQ +A+P ++ G+D++G A+TG+GKTLAF
Sbjct: 5 IMS--DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFA 62
Query: 158 IPAVELLY-NAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT---VGLVIGGSA 213
P ++ L NA AP GT V+V+ PTRELA Q +A Y + V +V GG+
Sbjct: 63 APILDRLSRNASPAPVRGTRVLVLAPTRELAGQ---IATSFGTYGAGLNLRVVMVCGGAK 119
Query: 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
G+ ++ +G ++LVATPGRL+D L + ++ L++DEAD++L+ F +R I
Sbjct: 120 IGGQIRQLERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAI 178
Query: 274 MKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS 333
K +P K RQT FSAT K VE LA +F P + V T T ++Q C V
Sbjct: 179 AKNVPSK-RQTLFFSATMPKAVESLAA-TFLRNPAEVSVAPPAT--TAGRIEQRVCFVEQ 234
Query: 334 AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFF 393
++ LL ++ + +VF + + + L +D IHG + Q +R
Sbjct: 235 PEKASLLIEKIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALE 294
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
F IL+ TD+AARG+ + A+ ++ YD PD P++++HR+GRTAR G G A+ F
Sbjct: 295 AFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARA-GNSGVAISF 353
Query: 454 LIPEELQFLRYLK 466
+E LR ++
Sbjct: 354 CSRDERPTLRAIE 366
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 131/381 (34%), Positives = 206/381 (54%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA-VE 162
F L L + + + D GF T IQ + +P + GKDV G A+TG+GKT AFLI +
Sbjct: 3 FADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTK 62
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
LL + + R I++ PTREL +Q A+ L + T+ + GG + +
Sbjct: 63 LLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALK 122
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD- 281
+G +++V TPGRL+D+L+ K + K ++ LVIDEADR+ + F ++R I++ LP D
Sbjct: 123 EGADVVVGTPGRLIDYLKQ-KVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDK 181
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQ +FSAT ++V +LA F P + V ++T E ++Q V ++F LL
Sbjct: 182 RQNLMFSATLNQRVMELA-YEFMNVPEKVAVTP--EQMTAERVEQVLYHVGRKEKFPLLL 238
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
L++ ++ M+F ++ +F E L C I G +Q+KR DF +
Sbjct: 239 GLLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLP 298
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE---E 458
I++ TDVA+RGL I V ++ YD P + ++Y+HR+GRTAR GA G A+ +
Sbjct: 299 IMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARA-GAEGKAISMADEDGAFH 357
Query: 459 LQFLR-YLKAAKVPVKEYEFD 478
L+ + Y+K K+PV+ E D
Sbjct: 358 LEAIHEYIKD-KIPVEWAEDD 377
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 145/417 (34%), Positives = 211/417 (50%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LS +AI MGF+ T IQA+ +P + KDV+G A+TG+GKT AF IP
Sbjct: 2 TITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPL 61
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVI---GGSARRGE 217
VE + N + +P IVI PTRELAIQ V+++L K V+ GG +
Sbjct: 62 VEKI-NPE-SPN--IQAIVIAPTRELAIQ---VSEELYKIGQDKRAKVLPIYGGQDIGRQ 114
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ K N++V TPGRLLDH+ N + N+ +V+DEAD +L F +++ I+ +
Sbjct: 115 IRALKKNPNIIVGTPGRLLDHI-NRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNV 173
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P + QT LFSAT ++ +A F T P ++ V V+N +QQ Y V K+F
Sbjct: 174 PS-EHQTLLFSATMPAPIKRIAE-RFMTEPEHVKVKAKEMTVSN--IQQFYLEVQERKKF 229
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L L + +VF + V +E L IHG Q KR F +
Sbjct: 230 DTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKE 289
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G G A+ F+ P
Sbjct: 290 GAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRA-GKTGMAMTFITPR 348
Query: 458 ELQFLRYLKAA---KVP-VKEYEFDQKKLANVQSHLEKLVAN------NYYLNKSAK 504
E LR ++ K+ +KE D+ Q +E+L N+Y+ +A+
Sbjct: 349 EKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAE 405
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 130/386 (33%), Positives = 212/386 (54%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE- 162
F+S RAI D G+Q MT IQ +A+P + G+DVL +A+TG+GKT AF +P ++
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
++ N ++ T V+++ PTRELA Q + KY + +V + GG +A+++
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+G +++VATPGRLL+HL ++ LV+DEADR+L+ F ++++I++ + KK R
Sbjct: 123 RGADIIVATPGRLLEHL-TACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKK-R 180
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
Q LFSAT + V+ LA P I D T Q Y V KR +L
Sbjct: 181 QNLLFSATFSSAVKKLAN-EMMIKPQVISADKQNTTADTVS-QVVYPVEQRRKRELLSEL 238
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
K+N ++V+VF ++ ++ + L + +HG++ Q R +F + +
Sbjct: 239 IGKKNW-QQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFL 462
L+ T+VAARGLDIP+++++V +D P ++Y+HR+GRT R G G A+ F+ EE + L
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRA-GKSGVAISFVSREEERTL 356
Query: 463 RYL------KAAKVPVKEYEFDQKKL 482
+ K ++ V YE + L
Sbjct: 357 ADIEKLIGQKIRRITVPGYEVGSRDL 382
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 134/384 (34%), Positives = 206/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + L R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 182 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 360 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 415
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 416 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 533
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 534 TFINKACDESVLMDLKALLLEAKQ 557
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 132/374 (35%), Positives = 209/374 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF SLGLS+ AI+ G+ T +Q RA+P ++ G+D++ AA+TG+GKT F +P +E
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 163 LLY---NAQFAPRNGTG---VIVICPTRELAIQTH----AVAKDLLKYHSQTVGLVIGGS 212
L+ + + R+G V+V+ PTRELA Q H A+DL K+ S + GG
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDL-KFVS---ACIFGGV 117
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQ 272
+ + + +GV++LVA PGRLLD L +++ LV+DEADR+L+ F ++++
Sbjct: 118 GMNPQVQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK 176
Query: 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP 332
++ LP K RQ LFSAT +K + DLA P I+V T V E ++Q +P
Sbjct: 177 VLARLPAK-RQNLLFSATFSKDITDLAGKLLHN-PERIEVTPPNTTV--ERIEQRVFRLP 232
Query: 333 SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTF 392
++ + LL + ++V+VF + + +E L + IHG + Q RT
Sbjct: 233 ASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKAL 292
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL 452
DF E IL+ TD+AARGLDI + +V ++ P+ ++Y+HR+GRT R G G A+
Sbjct: 293 ADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRA-GRSGEAIS 351
Query: 453 FLIPEELQFLRYLK 466
+ P+E + L+ ++
Sbjct: 352 LVAPDEEKLLKSIE 365
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 486 (176.1 bits), Expect = 4.4e-49, Sum P(2) = 4.4e-49
Identities = 128/374 (34%), Positives = 200/374 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F + +S+ T + +Q G ++ +Q + P+ GKDV+ ARTG+GKT +F IP +E
Sbjct: 114 AFSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIE 173
Query: 163 LLYNAQFAPRNGTG--VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
L R G V+V+ PTRELA Q KD+ + TV GG+ G+ +
Sbjct: 174 KLQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITR--KLTVACFYGGTPYNGQIDL 231
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
I G+++LV TPGR+ DHLQN K + K +K +V+DE D++L+ F E++ I+++ KK
Sbjct: 232 IRSGIDILVGTPGRIKDHLQNGKLDLTK-VKHVVLDEVDQMLDMGFAEQVEDILRVAYKK 290
Query: 281 DR----QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336
D QT LFSAT V D+A+ ++ +D+ +T+ ++ ++R
Sbjct: 291 DSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQR 350
Query: 337 FILLYSFLKRNLSK--KVMVFFSSCNSVKFHSELL--RYIQVDCFDIHGKQKQQKRTTTF 392
++ ++ + +VF C + K +EL I+ DC +HG Q++R T
Sbjct: 351 AAVIGDVIQVYSGSYGRTIVF---CETKKDANELALNASIKQDCQSLHGDIPQKQREITL 407
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL 452
F +L+ T+VAARGLDIP VD +VQ PP + + YIHR GRT R G G +
Sbjct: 408 KGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRA-GRTGICIC 466
Query: 453 FLIPEELQFLRYLK 466
F +E LRY++
Sbjct: 467 FYQRKEENQLRYVE 480
Score = 43 (20.2 bits), Expect = 4.4e-49, Sum P(2) = 4.4e-49
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 561 RKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
R GSRNG + R R KR + R
Sbjct: 660 RSFSGSRNGRRGGSGRNRFRSRGQKRSYDR 689
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 133/384 (34%), Positives = 205/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 360 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 415
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 416 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 533
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 534 TFINKACDESVLMDLKALLLEAKQ 557
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 133/384 (34%), Positives = 205/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 360 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 415
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 416 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 533
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 534 TFINKACDESVLMDLKALLLEAKQ 557
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 133/384 (34%), Positives = 205/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 209 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 268
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 269 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 328
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 329 SVKEQMETIRHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 386
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 387 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 442
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 443 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 501
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 502 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 560
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 561 TFINKACDESVLMDLKALLLEAKQ 584
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 133/384 (34%), Positives = 205/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 200 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 259
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 260 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 319
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 320 SVKEQMETIRHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 377
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 378 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 433
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 434 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 492
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 493 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 551
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 552 TFINKACDESVLMDLKALLLEAKQ 575
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 133/384 (34%), Positives = 205/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 360 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 415
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 416 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 533
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 534 TFINKACDESVLMDLKALLLEAKQ 557
>UNIPROTKB|F1SV16 [details] [associations]
symbol:F1SV16 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074980 EMBL:CU930036
Ensembl:ENSSSCT00000016375 OMA:SAREVPM Uniprot:F1SV16
Length = 301
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 109/213 (51%), Positives = 145/213 (68%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F L LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 69 TRFSDLPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 129 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F NL+ LV+DEADRIL+ F + M I++ LPKK
Sbjct: 189 -NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKK- 246
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314
RQT LFSATQTK V+DLARLS + P Y+ V +
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKN-PEYVWVHE 278
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 289 (106.8 bits), Expect = 5.5e-49, Sum P(3) = 5.5e-49
Identities = 91/278 (32%), Positives = 138/278 (49%)
Query: 99 MSTTSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLA 155
+ TT+F + L + + M T IQ+ +P L+ KD A+TGSGKTLA
Sbjct: 135 IKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLA 194
Query: 156 FLIPAVELLYNAQ---FAPRNGTGVIVICPTRELAIQTHAVAKDLLKY---HSQTVGLVI 209
+L+P V+ L +G +++ PTREL Q + VA L H VI
Sbjct: 195 YLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVI 254
Query: 210 GGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEE 269
GG ++ E RI KGVN+L+ TPGRL DHL+NT+ ++ +V+DE DR+++ FEE
Sbjct: 255 GGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEET 314
Query: 270 MRQIMKLLP------KKD------RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRT 317
+ +I+ L KKD + T L SAT V+ L+ + + +Y+
Sbjct: 315 LTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDA-LYLK--SSIV 371
Query: 318 KVTNEG-------LQQGYCVVPSAKRFILLYSFLKRNL 348
+ TN+G L Q Y VVP R + L + L+ ++
Sbjct: 372 EETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHV 409
Score = 233 (87.1 bits), Expect = 5.5e-49, Sum P(3) = 5.5e-49
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 377 FDIHGKQKQQKRTTTFFDFCKAEKG---ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEY 433
+ +HG QQ RT+T F +E ILLCTDVAARGLD+P VD +VQYD P +Y
Sbjct: 471 YRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDY 530
Query: 434 IHRVGRTARGEGARGNALLFLIPEELQFLRYLKAA 468
+HR+GRTAR G G A++FL+P+E +++ LK++
Sbjct: 531 LHRIGRTARA-GHNGAAIMFLLPKESEYINLLKSS 564
Score = 104 (41.7 bits), Expect = 5.5e-49, Sum P(3) = 5.5e-49
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 479 QKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAAS 536
Q + Q LE+ + N + AK A+ SY+ AY +H S + IFN+ L L +A S
Sbjct: 595 QDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKS 654
Query: 537 FCF-SSPPKVNLTIDSSASKFRKKTRKVEGSRNGFSE 572
F +P K++ +++SK RK+ V+ ++ S+
Sbjct: 655 FALREAPGKIS---GANSSKPRKQGGSVDKGKSKSSK 688
Score = 98 (39.6 bits), Expect = 3.1e-28, Sum P(3) = 3.1e-28
Identities = 34/116 (29%), Positives = 59/116 (50%)
Query: 277 LPKKDRQTALFSATQ---TKKVEDLARLS--FQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
+P + + T L SAT K++ D A + + + + +DG ++ + LQ+ Y VV
Sbjct: 335 IPSR-KVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQR-YVVV 392
Query: 332 PSAKRFILLYSFLKRNLS--KKVMVFFSSCNSVKFHSELLRY-IQVDCFDIHGKQK 384
P R + L + L+ ++ KK+++F S +SV FH E R I D + K+K
Sbjct: 393 PPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEK 448
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 385 (140.6 bits), Expect = 6.4e-49, Sum P(2) = 6.4e-49
Identities = 108/373 (28%), Positives = 189/373 (50%)
Query: 207 LVIG--GSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA 264
L++G G+ R + + +L+ TPGR+L+ L +++ +L+ +++DEAD++L+
Sbjct: 132 LLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDF 191
Query: 265 NFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD----GRTKVT 320
+FE+++ I+K LPK+ R+T LFSAT + + R PV + V G +
Sbjct: 192 SFEKDVINILKKLPKQ-RRTGLFSATISSAGNTIFRTGMNN-PVKVQVKSKNYFGEQSNS 249
Query: 321 NEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLR--YIQ----- 373
+ LQ Y ++ + L + L + KK +V+F +C SVK ++ Y Q
Sbjct: 250 PKSLQLSYMMINPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDE 309
Query: 374 -VDCFDIHGKQKQQKRTTTFFDFCKAE----KGILLCTDVAARGLDIPAVDWIVQYDPPD 428
+ F +HG+ + R T +F + + K IL+ TDVAARG+DIP VD ++Q DPP
Sbjct: 310 PLKFFSLHGQLNTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPT 369
Query: 429 EPKEYIHRVGRTARGEGARGNALLFLIP--EELQFLRYLKAAKVPVKEYEFDQ----KKL 482
+P ++HR GRT R G A++ L +E ++ +++ + + + + K L
Sbjct: 370 DPNVFLHRCGRTGRANKV-GRAIVMLNDNCQEEDYIGFMEVKGIFLTKQDIPTSSATKNL 428
Query: 483 -ANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSS 541
N Q L + + + ++ A +Y +I Y+ H IF + LD +A +
Sbjct: 429 HENFQIKLRQYMLEDRARHELAVKSYVGFIRYYSKHIASSIFRLATLDYLGIAKMYGLLR 488
Query: 542 PPKVNLT--IDSS 552
PK+ T ID+S
Sbjct: 489 LPKMPETKYIDNS 501
Score = 152 (58.6 bits), Expect = 6.4e-49, Sum P(2) = 6.4e-49
Identities = 45/147 (30%), Positives = 74/147 (50%)
Query: 103 SFDSLGLSQHTF--RAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
++++L H + AI MG+ MT +QA +P L KDV+ A TGSGKTL+F+IP
Sbjct: 9 AWENLRYDLHPWIKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPV 68
Query: 161 VELLYNAQFAP----------RNGTGV-IVICPTRELAIQTHAVAKDLLKYHSQTVGLVI 209
++ + + + P + G + IV+ PTRELA Q +V +L+Y + G I
Sbjct: 69 LQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRI 128
Query: 210 GGSARRGEAERIVKGVNLLVATPGRLL 236
G + + +N + ++L
Sbjct: 129 NTQLLVGSIGNVREDLNQFLTNQPQIL 155
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 130/407 (31%), Positives = 218/407 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F GL I+ MGF TQIQ +A+P M G D++ +++TGSGKTLAF+IPA++
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVG-LVIGGSARRGEAERIV 222
L + + V+++ PTRELA Q + + L ++Q L++GG + + +
Sbjct: 63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKN-LKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +VATPGRL DHL T+G + N L+ L++DEADR+L+ F +E+ QI K +
Sbjct: 122 KEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRK 179
Query: 282 RQTALFSAT-QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQT LFSAT +V + A T P I ++ G ++ + ++ Y ++ LL
Sbjct: 180 RQTLLFSATLDHAQVNEFAT-ELLTKPKRIAINAGHSEHVDIA-KRFYLADNLTQKEALL 237
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
FL S+++++F ++ + ++LL ++ + G+ Q +R F K +
Sbjct: 238 QHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQH 297
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
IL+ TD+A+RGLD+ V ++ +D P +E++HR+GRT R G +G+A+ + P +
Sbjct: 298 KILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRA-GTKGDAISLVGPNDWL 356
Query: 461 FLRYLKA---AKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAK 504
L+ ++A K+ + E + K ++ EK V + K K
Sbjct: 357 SLKNVEAFLQQKISFTKVEGIKVKFKGLKPKKEKAVKAKVSVAKDKK 403
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 130/407 (31%), Positives = 218/407 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F GL I+ MGF TQIQ +A+P M G D++ +++TGSGKTLAF+IPA++
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVG-LVIGGSARRGEAERIV 222
L + + V+++ PTRELA Q + + L ++Q L++GG + + +
Sbjct: 63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKN-LKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K +VATPGRL DHL T+G + N L+ L++DEADR+L+ F +E+ QI K +
Sbjct: 122 KEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRK 179
Query: 282 RQTALFSAT-QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQT LFSAT +V + A T P I ++ G ++ + ++ Y ++ LL
Sbjct: 180 RQTLLFSATLDHAQVNEFAT-ELLTKPKRIAINAGHSEHVDIA-KRFYLADNLTQKEALL 237
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
FL S+++++F ++ + ++LL ++ + G+ Q +R F K +
Sbjct: 238 QHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQH 297
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
IL+ TD+A+RGLD+ V ++ +D P +E++HR+GRT R G +G+A+ + P +
Sbjct: 298 KILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRA-GTKGDAISLVGPNDWL 356
Query: 461 FLRYLKA---AKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAK 504
L+ ++A K+ + E + K ++ EK V + K K
Sbjct: 357 SLKNVEAFLQQKISFTKVEGIKVKFKGLKPKKEKAVKAKVSVAKDKK 403
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 133/384 (34%), Positives = 206/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + L R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 181 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 240
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 241 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGV 300
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E + GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 301 SLKEQMETMRHGVHIMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 358
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 359 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 414
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 415 KEEAKMVYLLECLQKT-PPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 473
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 474 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 532
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 533 TFINKACDESVLMDLKALLLEAKQ 556
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 520 (188.1 bits), Expect = 7.8e-49, P = 7.8e-49
Identities = 128/365 (35%), Positives = 202/365 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
S+ GL++ ++ ++ T IQA+ +P +M G+D++G ARTGSGKTLAFL+P
Sbjct: 510 SWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFR 569
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+L + AP G +++ PTRELA+Q H K K V GG++ + +
Sbjct: 570 HILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAEL 629
Query: 222 VKGVNLLVATPGRLLDHL--QNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+G +++V TPGR++D L N + + + LV+DEADR+ + F ++ I+ + +
Sbjct: 630 KRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSI-R 688
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
DRQT +FSAT KVE++A+ P+ I + GR+ V+++ ++Q V P+ RF
Sbjct: 689 PDRQTIMFSATFPPKVENVAK-KILNKPLEI-IAGGRSIVSSD-IEQFVEVRPTETRFRR 745
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFC 396
L L K ++ F+ N + L R + Q C +HG + Q R T DF
Sbjct: 746 LIELLSIWYHKGQILIFT--NRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFK 803
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
K IL+ T +A+RGLDI ++ +V +D PD ++Y+HRVGRT R G RG A F+ P
Sbjct: 804 NKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRA-GNRGTAYTFITP 862
Query: 457 EELQF 461
+E +F
Sbjct: 863 DEERF 867
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 499 (180.7 bits), Expect = 7.9e-49, Sum P(2) = 7.9e-49
Identities = 135/375 (36%), Positives = 214/375 (57%)
Query: 112 HTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAP 171
+ + I GF T IQ++A P + G+D++G A+TGSGKTLAFL+P++ + NAQ
Sbjct: 394 YLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHI-NAQPVL 452
Query: 172 RNGTG--VIVICPTRELAIQTHAVAKDLLKYH--SQTVGL-VIGGSARRGEAERIVKGVN 226
R G V+V+ PTRELA+Q + ++ K+ SQ V GG+++ + + KGV
Sbjct: 453 REDDGPIVLVLAPTRELALQ---IQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVE 509
Query: 227 LLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTAL 286
+++ATPGRL+D L++ K + + + LV+DEADR+L+ FE ++R+I+ + + DRQT +
Sbjct: 510 IVIATPGRLIDILESGKTNL-RRVTYLVLDEADRMLDMGFEPQIRKIISQI-RPDRQTLM 567
Query: 287 FSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQGYCVVPSAKRFILLYSFLK 345
FSAT K+V+ LA F T +I V G T++T N ++Q V ++ + SFL
Sbjct: 568 FSATWPKEVQALAH-DFLTD--HIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLG 624
Query: 346 R-NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILL 404
+KV+VF + V +L++ IHG + Q +R F I++
Sbjct: 625 SVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMI 684
Query: 405 CTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL----Q 460
TDVA+RGLDI + ++V YD P+ + YIHR+GRTAR GA G + L + +
Sbjct: 685 ATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARA-GASGVSYSLLTTDNARLANE 743
Query: 461 FLRYLKAAK--VPVK 473
++ L AK +P++
Sbjct: 744 LIKVLTEAKQKIPIE 758
Score = 37 (18.1 bits), Expect = 7.9e-49, Sum P(2) = 7.9e-49
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPP 135
+S+ T I+ F ++ R VPP
Sbjct: 355 VSKFTQEEIEKFRASFQMTVKGREVPP 381
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 133/384 (34%), Positives = 204/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + R ++ G Q T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 178 SFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 237
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQT---VGLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S L IGG
Sbjct: 238 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGM 297
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 298 SVKEQMETIKHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 355
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S P+ I+V GR + + Q V
Sbjct: 356 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPITINV--GRAGAASLDVVQEVEYV 411
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 412 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 470
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 471 IEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 529
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 530 TFINKACDESVLMDLKALLLEAKQ 553
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 158/504 (31%), Positives = 236/504 (46%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LS +AI+ MGF+ T IQA+ +P + KDV+G A+TG+GKT AF IP
Sbjct: 2 TITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPL 61
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVI---GGSARRGE 217
VE + N + +P IVI PTRELAIQ V+++L K V+ GG +
Sbjct: 62 VEKI-NPE-SPN--IQAIVIAPTRELAIQ---VSEELYKIGQDKRARVLPIYGGQDIGRQ 114
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ K +++V TPGRLLDH+ N + + + +V+DEAD +L F E++ I+ +
Sbjct: 115 IRALKKNPHIIVGTPGRLLDHI-NRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNV 173
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P + QT LFSAT ++ +A F T P ++ V V+N +QQ Y V K+F
Sbjct: 174 PA-EHQTLLFSATMPAPIKRIAE-RFMTNPEHVKVKAKEMTVSN--IQQFYLEVHERKKF 229
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L L + +VF + V +E L IHG Q KR F +
Sbjct: 230 DTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQ 289
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+L+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G G A+ F+ P
Sbjct: 290 GAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRA-GKTGMAMTFITPR 348
Query: 458 ELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH 517
E LR A + K + D+ K + +E + L +
Sbjct: 349 EKDMLR---AIEQTTKR-KMDRMKAPTLDEAIE---GQQQVTVDRIRTIIEENNLNFYMT 401
Query: 518 SMKDIFNVH-RLDLQAVAASFCFSSPPK--VNLTIDSSASKFRKKT-------RKVEGSR 567
+ ++ H + + A A P V LT ++ R K R+ G
Sbjct: 402 AAAELLEDHDSVTVVAAAIKMMTKEPDNTPVRLTEEAPLRTKRNKNHHHRSSKRRDGGGY 461
Query: 568 NGFSESNPYGRQRDEDDKRQFVRY 591
G + + Y ++R +D+RQ Y
Sbjct: 462 RGKNNRSSYDKKRSSNDRRQKKSY 485
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 133/384 (34%), Positives = 205/384 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + R ++ G T IQ + +P ++ G+D++G A TGSGKTL F +P +
Sbjct: 182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 163 LLYNAQ----FAPRNGTGVIVICPTRELAIQTHAVAK---DLLKYHSQTV---GLVIGGS 212
+ F+ R G ++ICP+RELA QTH + + LL+ S + L IGG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL-KCLVIDEADRILEANFEEEMR 271
+ + + E I GV+++VATPGRL+D LQ K + ++ + L +DEADR+++ FE ++R
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQ--KKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ A+ S PV I+V GR + + Q V
Sbjct: 360 TIFSYF-KGQRQTLLFSATMPKKIQNFAK-SALVKPVTINV--GRAGAASLDVIQEVEYV 415
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 416 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT R G G A
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRS-GNTGIAT 533
Query: 452 LFLIPE-ELQFLRYLKAAKVPVKE 474
F+ + L LKA + K+
Sbjct: 534 TFINKACDESVLMDLKALLLEAKQ 557
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 485 (175.8 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 124/363 (34%), Positives = 198/363 (54%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F+ L + I + GF+ + IQ ++P + G+D+L A+ G+GKT AF IP +E
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
+ N ++I PTRELA+QT V K+L K+ V + GG++ + + R+ +
Sbjct: 193 IDQ----DNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 248
Query: 224 GVNLLVATPGRLLDHLQNTKGF-IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
V+LLV TPGR+LD + KG + K+ LV+DEAD++L F+ + ++ LP+ R
Sbjct: 249 PVHLLVGTPGRILDLTK--KGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES-R 305
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
Q +FSAT V+D + F T P I++ D ++T +G+ Q Y V ++ L +
Sbjct: 306 QILMFSATFPVTVKDF-KDRFLTNPYVINLMD---ELTLKGITQFYAFVEERQKIHCLNT 361
Query: 343 -FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
F K +++ + +F +S N V+ ++ + + CF IH K Q R F DF
Sbjct: 362 LFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 420
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
L+CTD+ RG+DI AV+ ++ +D P + Y+HRVGR+ R G G A+ LI E +F
Sbjct: 421 NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRF-GHLGLAVN-LITYEDRF 478
Query: 462 LRY 464
Y
Sbjct: 479 NLY 481
Score = 41 (19.5 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 498 YLNKSAKDAYRSYI-LAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTI 549
YL++ + ++ LA N + +D FN++R++ Q + PP ++ I
Sbjct: 452 YLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE-QELGTEIK-QIPPHIDQAI 502
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 499 (180.7 bits), Expect = 8.8e-49, Sum P(2) = 8.8e-49
Identities = 125/363 (34%), Positives = 199/363 (54%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F S+GLS F+ + G++ T IQ + +P ++ G+DV+ ARTGSGKT FL+P E
Sbjct: 38 FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER 97
Query: 164 LYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L AP +G +++ PTRELA+QT K+L K+ LV+GG + +
Sbjct: 98 LK----APSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALH 153
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+ ++++ATPGRL+ H+ ++++ +V DEADR+ E F E++++I+ LP
Sbjct: 154 ENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGS-H 211
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
QT LFSAT K + + AR T P+ I +D +K++ + + V K +LL+
Sbjct: 212 QTVLFSATLPKLLVEFARAGL-TEPMLIRLDV-ESKLSEQLKLAFFHVRGDDKPAVLLH- 268
Query: 343 FLKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L R + K + +VF ++ + ++ ELL + C I+ Q R F +
Sbjct: 269 -LLRCVVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGK 327
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+LL TDVAARGLDIP +D ++ Y P + K ++HRVGR AR G G A + P+E+
Sbjct: 328 CQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARA-GRSGTAYSLVAPDEM 386
Query: 460 QFL 462
++
Sbjct: 387 PYI 389
Score = 39 (18.8 bits), Expect = 8.8e-49, Sum P(2) = 8.8e-49
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 427 PDEPKEYIHRVGRTARGEGAR-----GNALLFLIPEEL-------QFLRYLKAAKVPVKE 474
P PK++ G + GEG+ A+L L+ +E Q L++ + K V +
Sbjct: 623 PYRPKDFESERGLSVGGEGSAFEQQAAGAVLDLMGDESHNLNRSKQLLKWDRKKKRFVGQ 682
Query: 475 YEFDQKKLANVQS--HLEKLVANNYY 498
++KK +S ++ NN Y
Sbjct: 683 TGQEEKKKVRTESGRYISSSYKNNLY 708
Score = 38 (18.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 499 LNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSS 541
L + A +A + Y+ + S + I V +DL + FS+
Sbjct: 447 LRRVADNAQKQYLRSRPGPSPESIKRVKEMDLSQLGIHPLFSA 489
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 132/368 (35%), Positives = 198/368 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F LGLSQ +AI+ MGF+ T IQA+ +P + KDV+G A+TG+GKT AF IP V
Sbjct: 2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV 61
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS-QTVGL--VIGGSARRGEA 218
E + N + + +V+ PTRELAIQ V+++L K + + V + + GG +
Sbjct: 62 EKV-NVK---NSAVQALVVAPTRELAIQ---VSEELYKIGAVKRVRVLPIYGGQDIERQI 114
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ K +++V TPGR++DH+ N +++ +V+DEAD +L F E++ I+ +P
Sbjct: 115 RALKKHPHVIVGTPGRIIDHI-NRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVP 173
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI 338
+RQT LFSAT + +A F P + V V N +QQ Y V K+F
Sbjct: 174 A-ERQTLLFSATMPDPIRRIAE-RFMNEPELVKVKAKEMTVPN--IQQYYLEVHEKKKFD 229
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
+L L + +VF + V +E L IHG Q KR + F +
Sbjct: 230 ILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEG 289
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
IL+ TDVAARGLDI V + +D P +P+ Y+HR+GRT R G G A+ F+ P E
Sbjct: 290 AIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA-GKTGVAMTFVTPRE 348
Query: 459 LQFLRYLK 466
+ L +++
Sbjct: 349 IGQLHHIE 356
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 125/366 (34%), Positives = 197/366 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA-VE 162
F + AI +GF T IQA+ P + G+D++G A TGSGKTLA+L+PA V
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+ + +G V+++ PTRELA+Q ++ + GG+ + + +
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286
Query: 223 KGVNLLVATPGRLLDHL--QNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+GV +++ATPGRL+D L Q+T K + LV+DEADR+L+ FE ++R+I+ + +
Sbjct: 287 RGVEIVIATPGRLIDMLECQHTN---LKRVTYLVLDEADRMLDMGFEPQIRKIVSQI-RP 342
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DRQT L+SAT ++VE LAR F P + K N+ + Q +VP+ +++ L
Sbjct: 343 DRQTLLWSATWPREVETLAR-QFLRDPYKAIIGSTDLKA-NQSINQVIEIVPTPEKYNRL 400
Query: 341 YSFLKRNLS-KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ LK+ + K+++F + + LR IHG + Q +R +F
Sbjct: 401 LTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
I+ TDVAARGLD+ + +V YD P+ ++YIHR+GRT R GA+G A F +
Sbjct: 461 SPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRA-GAKGMAFTFFTHDNA 519
Query: 460 QFLRYL 465
+F R L
Sbjct: 520 KFAREL 525
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 122/360 (33%), Positives = 202/360 (56%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+FD G + + ++D GF T IQ + P + G+D++G A TGSGKTL++ +P++
Sbjct: 127 TTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSI 186
Query: 162 ELLYNAQFAPRNGTG--VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+ NAQ + G G V+V+ PTRELA+Q K V GG+ + +
Sbjct: 187 VHI-NAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIR 245
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +GV + +ATPGRL+D L+ K + K + LV+DEADR+L+ FE ++R+I+ + +
Sbjct: 246 DLARGVEICIATPGRLIDMLEAGKTNL-KRVTYLVLDEADRMLDMGFEPQIRKIVDQI-R 303
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
DRQT ++SAT K+V+ L R + P+ + + ++ Q + +KR L
Sbjct: 304 PDRQTLMWSATWPKEVQQLTR-DYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRL 362
Query: 340 LYSFLKRNLSKK---VMVFFSSCNSVKFHSELLRYIQVD---CFDIHGKQKQQKRTTTFF 393
+ L+ L++K ++VF S+ + E+ Y++ D IHG ++Q +R
Sbjct: 363 V-KHLESALNEKDNKILVFASTKRTC---DEITTYLRSDGWPALAIHGDKEQNERDWVLD 418
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
+F K + I++ TDVAARG+D+ + ++ YD P ++Y+HR+GRT RG GA G A+ F
Sbjct: 419 EFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRG-GASGTAISF 477
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 511 (184.9 bits), Expect = 2.8e-48, P = 2.8e-48
Identities = 126/365 (34%), Positives = 206/365 (56%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
+ +GL ++AI+ GF T IQ + +P +M GKDV+ +RTGSGKT AF+IP ++
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 164 LYNAQFAPRNGTGV--IVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L R+ TG+ +++ PTRELA+QT V K+L ++ ++GG + I
Sbjct: 86 LKR-----RDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTI 140
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+ ++L+ATPGRLL H+ ++ +V DEADR+ E F++++ + +K +P+
Sbjct: 141 HENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPES- 198
Query: 282 RQTALFSATQTKKVEDLARLSFQTTP--VYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFI 338
RQT LFSAT K + D A+ T P V +DVD+ KV+++ L +C+ P K F
Sbjct: 199 RQTLLFSATLPKMLVDFAKAGL-TDPMLVRLDVDE---KVSDK-LSMVFCMCRPDEKLFA 253
Query: 339 LLYSFLKRNL-SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
LL+ + + +K+ +VF ++ V++ +L +DC ++ + R F +
Sbjct: 254 LLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHE 313
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ IL+ TDVAARG+DIP +D ++ P + K ++HRVGR AR G G A+ + +
Sbjct: 314 KQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARA-GRSGTAISLIAND 372
Query: 458 ELQFL 462
EL +L
Sbjct: 373 ELPYL 377
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 130/382 (34%), Positives = 207/382 (54%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
M+ T+F GL+++ +A+ + G+ T IQ A+P +++G DV G A+TG+GKT AF++
Sbjct: 1 MTETTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVL 60
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
P ++ L + R +++CPTRELA Q + KY T+ L+IGG + + +
Sbjct: 61 PMIQRLSTGRARARMPR-CLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQE 119
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ +GV++L+ATPGRL+D K + ++ L+IDEADR+L+ F ++ +I LP
Sbjct: 120 TLLQRGVDVLIATPGRLMDQFDRGK-LLMMGVETLIIDEADRMLDMGFIPDIEKICAKLP 178
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS----A 334
+RQT LFSAT ++ LA+ +FQ P I+V R T E + Q +P+ A
Sbjct: 179 A-NRQTLLFSATFPTDIQRLAK-TFQKDPKKIEVT--RPAQTAETISQFVVKLPTNDGKA 234
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+R L N+ K +VF + V + L D IHG Q R+ T
Sbjct: 235 RRTALRRVIEATNV-KNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQR 293
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F + +L+ +DVAARGLDIP V + + PP + ++Y+HR+GRT R G G + +
Sbjct: 294 FRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRA-GRTGESYTVV 352
Query: 455 IPEELQFLRYL-KAAKVPVKEY 475
P + + ++ K K V E+
Sbjct: 353 TPADDKSWGFVVKMIKKDVPEF 374
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 124/372 (33%), Positives = 207/372 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+FD G Q+ ++ GF+ T IQ++ P + G+DV+G A TGSGKTL++ +PA+
Sbjct: 141 TFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIV 200
Query: 163 LLYNAQ--FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ NAQ AP +G V+++ PTRELA+Q A K V GG + +
Sbjct: 201 HI-NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRD 259
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ +GV + +ATPGRL+D L+ + + + + LV+DEADR+L+ FE ++R+I+ + +
Sbjct: 260 LSRGVEVCIATPGRLIDMLEAGRTNL-RRVTYLVLDEADRMLDMGFEPQIRKIISQI-RP 317
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQGYCVVPSAKRFIL 339
DRQT ++SAT K+V LA F YI V+ G ++ N + Q V+ ++
Sbjct: 318 DRQTCMWSATWPKEVRQLAS-DFLNN--YIQVNIGSMDLSANHRITQIVEVISEFEKRDR 374
Query: 340 LYSFLKR---NLSKKVMVFFSSCNSVKFHSELLRYIQVD---CFDIHGKQKQQKRTTTFF 393
+ L++ N K +VF + + E+ R+++ D IHG ++QQ+R
Sbjct: 375 MIKHLEKIMENRGNKCLVF---TGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLN 431
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
+F + I++ TDVA+RG+D+ + ++ YD P+ ++Y+HR+GRT R GA+G A+ F
Sbjct: 432 EFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRA-GAKGTAITF 490
Query: 454 LIPEELQFLRYL 465
+ + R L
Sbjct: 491 FTTDNAKQARDL 502
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 125/370 (33%), Positives = 203/370 (54%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
ST F LGL + + F+ T+IQ +A+P + G+D+L +++TGSGKTLAF++P
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 160 AV-ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
+ + L F+ ++ G+I++ PTRELA Q + + +L S T L+ GG +
Sbjct: 63 MLHKSLKTKAFSAKDPRGLILV-PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQV 121
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ + +G +VATPGRL DHL + F+ + L+ LV+DEADR+L+ F +E+R+I
Sbjct: 122 KALARGPRFIVATPGRLADHLDHRSLFL-EGLETLVLDEADRMLDLGFAKELRRIHNAAK 180
Query: 279 KKDRQTALFSAT-QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
+ RQT +FSAT V D+A + P I + G ++ + Q Y +
Sbjct: 181 HRRRQTLMFSATLDHADVNDMA-MELLNEPKRIAIGVG-SEEHKDITQHFYLCDHLDHKE 238
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
LL L ++V++F ++ +E L + + G Q +R T F +
Sbjct: 239 ALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFER 298
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
A IL+ TDVA+RGLDIPAV ++ +D P +EY+HRVGRT R G +G+A+ + P+
Sbjct: 299 AVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRA-GNKGDAMSLVGPK 357
Query: 458 ELQFLRYLKA 467
+ + + ++A
Sbjct: 358 DWESFKRVEA 367
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 128/411 (31%), Positives = 221/411 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F LGLS++ RA+ ++G++ T IQ+ ++ PLM GKD+LG A+TG+GKT AF +P +
Sbjct: 7 TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVI-GGSARRGEAERI 221
+ +Q P+ ++V+ PTRELA+Q K+ L I GG + + + +
Sbjct: 67 KV-TSQTTPQ----ILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNAL 121
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+G ++V TPGR++DH++ +G + + L+ LV+DEAD +L+ F +++ I++ P +
Sbjct: 122 KRGPQVIVGTPGRVMDHMR--RGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQ 179
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQ ALFSAT ++++ +A + I + T V + ++Q + V + L
Sbjct: 180 -RQLALFSATMPEQIKRVANKHLKNA-TNISIAASHTTV--DSIEQRFVQVSQHNKLEAL 235
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L+ ++ +++F + NS +E L +HG QQ R +
Sbjct: 236 VRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKL 295
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
IL+ TDVAARGLD+ + +V YD P + + Y+HR+GRT R G G A+LF+ E++
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRA-GRTGMAILFVTSREMR 354
Query: 461 FLRYLKAA--------KVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSA 503
LR ++ A KVP E +++L+ + L + + N+ + A
Sbjct: 355 MLRTIERATNSRISPMKVPSPE-TVAERRLSRLGEQLAQTMNNDLEFMREA 404
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 125/370 (33%), Positives = 203/370 (54%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
ST F LGL + + F+ T+IQ +A+P + G+D+L +++TGSGKTLAF++P
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 160 AV-ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
+ + L F+ ++ G+I++ PTRELA Q + + +L S T L+ GG +
Sbjct: 63 MLHKSLKTKAFSAKDPRGLILV-PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQV 121
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ + +G +VATPGRL DHL + F+ + L+ LV+DEADR+L+ F +E+R+I
Sbjct: 122 KALARGPRFIVATPGRLADHLDHRSLFL-EGLETLVLDEADRMLDLGFAKELRRIHNAAK 180
Query: 279 KKDRQTALFSAT-QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
+ RQT +FSAT V D+A + P I + G ++ + Q Y +
Sbjct: 181 HRRRQTLMFSATLDHADVNDMA-MELLNEPKRIAIGVG-SEEHKDITQHFYLCDHLDHKE 238
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
LL L ++V++F ++ +E L + + G Q +R T F +
Sbjct: 239 ALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFER 298
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
A IL+ TDVA+RGLDIPAV ++ +D P +EY+HRVGRT R G +G+A+ + P+
Sbjct: 299 AVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRA-GNKGDAMSLVGPK 357
Query: 458 ELQFLRYLKA 467
+ + + ++A
Sbjct: 358 DWESFKRVEA 367
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 120/369 (32%), Positives = 203/369 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF +G + ++ GF T IQ++ P M G+D++G A TGSGKTL++L+PA+
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI- 158
Query: 163 LLYNAQFAPRNGTG--VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ NAQ +G G V+V+ PTRELA+Q A + GG + +
Sbjct: 159 VHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRD 218
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ KGV +++ATPGRL+D +++ + + + LV+DEADR+L+ F+ ++R+I+ + +
Sbjct: 219 LQKGVEIVIATPGRLIDMMESNNTNL-RRVTYLVLDEADRMLDMGFDPQIRKIVSHI-RP 276
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DRQT +SAT K+VE L++ F P + + K N ++Q V+ ++++ L
Sbjct: 277 DRQTLYWSATWPKEVEQLSK-KFLYNPYKVIIGSSDLKA-NRAIRQIVDVISESQKYNKL 334
Query: 341 YSFLKRNLS-KKVMVFFSSCNSVKFHSELLRYIQVD---CFDIHGKQKQQKRTTTFFDFC 396
L+ + +++VF ++ K ++ R +++D IHG + Q +R +F
Sbjct: 335 VKLLEDIMDGSRILVFL---DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFR 391
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ I+ TDVAARGLD+ V +++ YD P ++Y+HR+GRT R GA+G A F
Sbjct: 392 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTV 450
Query: 457 EELQFLRYL 465
+F + L
Sbjct: 451 ANARFAKEL 459
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 513 (185.6 bits), Expect = 4.6e-48, P = 4.6e-48
Identities = 145/401 (36%), Positives = 211/401 (52%)
Query: 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNA 167
GL T I +GF +T IQA+A+P +M G+DV+G A+TGSGKT+AFLIP + +
Sbjct: 547 GLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKD- 605
Query: 168 QFAPRNGTGVI--VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGV 225
Q N G I ++ PTRELA Q H K LK + GG+ + + + +G
Sbjct: 606 QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA 665
Query: 226 NLLVATPGRLLDHLQNTKGFI--YKNLKCLVIDEADRILEANFEEEMRQIMKLLP--KKD 281
++V TPGR++D L G + + + +V+DEADR+ + FE Q+MK+L + D
Sbjct: 666 EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEP---QVMKILSNVRPD 722
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQT LFSAT + +E LAR + T P+ I V GR+ V E + Q V K+F+ L
Sbjct: 723 RQTVLFSATFPRNMEALARKTL-TKPIEIVVG-GRSVVAPE-ITQIVEVCNEEKKFVRLL 779
Query: 342 SFL------KRNLSKKVMVFFSSCNSVK-FHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
L N + ++F + EL+R C IHG + Q R +T D
Sbjct: 780 ELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRK-GYPCMSIHGGKDQIDRDSTIED 838
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F +L+ T VAARGLD+ + +V YD P+ ++Y+HR GRT R G G A+ FL
Sbjct: 839 FKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRA-GNTGTAVTFL 897
Query: 455 IPEELQF-LRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVA 494
++ ++ + KA K +E +KL V S LEK+ A
Sbjct: 898 TEDQERYSVDIAKALKQSGQEVPEAVQKL--VDSFLEKVKA 936
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 127/393 (32%), Positives = 214/393 (54%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
++ T F L L+ ++ MGF + T IQA+++P L+ G D+ G A+TG GKT+AFL
Sbjct: 6 LTETKFADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLA 65
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
L + N +++ PTRELAIQ H A ++ K +G+V GG +
Sbjct: 66 ATFHHLLQKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQR 125
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIY--KNLKCLVIDEADRILEANFEEEMRQIM-K 275
+ GV++L+ T GRL+D+++ +G IY KN++ +V+DEADR+ + F +++R + K
Sbjct: 126 LELEAGVDILIGTCGRLIDYMK--QG-IYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDK 182
Query: 276 LLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335
+ P +R + LFSAT + +V++LA P ++V+ + TN + + +
Sbjct: 183 MPPATERLSMLFSATLSFRVKELA-FDHMNDPTSVEVEPEQK--TNSRISEELFYPSNED 239
Query: 336 RFILLYSFLKRNLSKKVMVFFSS---CNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTF 392
+ LL + ++ + +K +VF ++ C V H + I+V + G Q+KR
Sbjct: 240 KMTLLQTLIEEDWPEKAIVFANTKHVCEKVFDHLNADK-IRVGL--LTGDVPQKKRLKIL 296
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL- 451
+F IL+ TDVAARGL IP+V + YD PD+ ++Y+HR+GRT R G G+A+
Sbjct: 297 EEFTDGTVDILVATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRA-GETGHAIS 355
Query: 452 ------LFLIPEELQFLRYLKAAKVPVKEYEFD 478
+F +PE ++ + +PV +Y+ D
Sbjct: 356 LACEQYVFNLPEIETYIGH----DLPVTKYDHD 384
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 130/389 (33%), Positives = 213/389 (54%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F+ G + + ++ +GF+ T IQ +A P M G+D++G + TGSGKTL++ +PA+
Sbjct: 122 TTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
Query: 162 ELLYNAQ--FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
+ NAQ +P +G V+V+ PTRELA+Q K V GG R +
Sbjct: 182 VHI-NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+++GV + +ATPGRLLD L + K + + + LV+DEADR+L+ FE ++R+I+ + +
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNL-RRVTYLVLDEADRMLDMGFEPQIRKIVDQI-R 298
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQGYCVVPSA-KRF 337
DRQT +FSAT K+V+ LAR YI V G + + ++Q VV +A KR
Sbjct: 299 PDRQTVMFSATWPKEVQRLARDYLND---YIQVTVGSLDLAASHNIKQIVEVVDNADKRA 355
Query: 338 IL---LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVD---CFDIHGKQKQQKRTTT 391
L + LK + KV++F + + ++ R+++ D IHG + Q +R
Sbjct: 356 RLGKDIEEVLK-DRDNKVLIF---TGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWV 411
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
+F + I++ TDVA+RG+D+ + + YD P ++Y+HR+GRT R GA+G A
Sbjct: 412 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRA-GAKGTAY 470
Query: 452 LFLIPEELQFLRYLKAAKVPVKEYEFDQK 480
+ + + R L + K+ + D K
Sbjct: 471 TYFTSDNAKQARELVSILSEAKQ-DIDPK 498
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 471 (170.9 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 153/492 (31%), Positives = 249/492 (50%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F LGLS+ A+Q++ + T+IQ +P +M K V+ + TGSGKTLA+L+P V+
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172
Query: 163 LL------YNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR-R 215
L+ + PR +V+CPTREL+ Q + VAK + +H++ +++ G +R R
Sbjct: 173 LMREDEANLGKKTKPRRPR-TVVLCPTRELSEQVYRVAKSI-SHHARFRSILVSGGSRIR 230
Query: 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIM- 274
+ + + ++++V TPGR+L H++ +Y ++ LV+DEAD + + F E+R+ +
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEGN-MVYGDIAYLVLDEADTMFDRGFGPEIRKFLA 289
Query: 275 ----KLLPKKDR--QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGY 328
+ L D+ QT L +AT T V+ L FQ ++ K+ N + +
Sbjct: 290 PLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIE-HLRTSTLHKKIANA--RHDF 346
Query: 329 CVVPSAK-RFILLYSFLKRNLSK--KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQ 385
+ + + L L+ +L+K KVMVF ++ NS + L Q+ + HG+
Sbjct: 347 IKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPA 406
Query: 386 QKRTTTFFDFCKAEKG---ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
++R F K E+G L+CTD+AARGLD+ VD +V +D P +Y+HR GRTAR
Sbjct: 407 EQRVENLKKF-KDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTAR 464
Query: 443 GEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKS 502
GA+G + L+ + Q L AA++ ++ + N +S LE L +N
Sbjct: 465 -MGAKGK-VTSLVSRKDQML----AARI--------EEAMRNNES-LESLTTDNV----- 504
Query: 503 AKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK--------VNLTIDSSAS 554
+DA R++I S+K I V + S SSPP V + SS S
Sbjct: 505 RRDAARTHITQEKGRSVKQIREVSKQRNSRDKPSS--SSPPARSTGGKTPVRKSSSSSFS 562
Query: 555 KFRKKTRKVEGS 566
K RK + E S
Sbjct: 563 KPRKASSPPEKS 574
Score = 45 (20.9 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 534 AASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRN 568
++S FS P K + + S SK ++K K GSR+
Sbjct: 556 SSSSSFSKPRKASSPPEKS-SKPKRKILKTVGSRS 589
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 299 (110.3 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 100/308 (32%), Positives = 149/308 (48%)
Query: 103 SFDSLGLSQH-TFRAIQDMGFQFMTQIQARAVPPLMVGK-DVLGAARTGSGKTLAFLIPA 160
+F +LGLS + + + T IQ ++ L+ + D A TGSGKTLA+L+P
Sbjct: 152 TFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPL 211
Query: 161 VELLYNAQFAPRNG-----TGV--------IVICPTRELAIQTHAVAKDLLKY-HSQTVG 206
V+ + A G T V I++ PTREL Q V + LL+ H G
Sbjct: 212 VQRIMALSRAKNEGDAKGDTSVHRDSGLFAIILAPTRELCKQISVVLEGLLRCAHWIVAG 271
Query: 207 LVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF 266
VIGG ++ E R+ KG+N+LVATPGRL DHL+NT+ N++ LV+DE DR++E F
Sbjct: 272 TVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGF 331
Query: 267 EEEMRQIMKLL-----PKK------DRQTALFSATQTKKVEDLARLSFQTTPVYIDVD-- 313
E+E+++I+ L P + R T L SAT V+ L +S + V+I D
Sbjct: 332 EKELQEIISKLDARQRPSRIPGVPAKRATILCSATLKMNVQKLGEISLKDA-VHIKADPA 390
Query: 314 --DG-RTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLR 370
DG +T +G + V K+ Y+ + L + F ++ S +
Sbjct: 391 DEDGEKTAEDKDG--DAFRVPAQLKQS---YAIVAAKLRLVTLTAFMKRTFMRKGSVMKA 445
Query: 371 YIQVDCFD 378
I V C D
Sbjct: 446 IIFVSCAD 453
Score = 275 (101.9 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 80/229 (34%), Positives = 116/229 (50%)
Query: 374 VDCFDIHGKQKQQKRTTTFFDFCK-AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 432
V + +HG Q RT+T F K + +L+CTDVA+RGLD+P VD +V+YDP E
Sbjct: 514 VTMYKLHGSLPQHVRTSTLSSFAKNRDPSVLICTDVASRGLDLPNVDLVVEYDPAFSADE 573
Query: 433 YIHRVGRTARGEGARGNALLFLIP--EE--LQFLR--YLKAAKVPVKEYEFDQKKLA--- 483
++HR+GRTAR G G AL+FL+P EE ++ L+ Y K + D K
Sbjct: 574 HLHRIGRTAR-LGRDGRALVFLLPGCEENYVEILKRGYRDGGKALTRSTTDDILKRGFGG 632
Query: 484 NVQSH-----LEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAAS 536
N++S LE+ +N + A+ AY+S+I AY +H + + IFN+ L L +A S
Sbjct: 633 NIESQKWQLELERWALDNPEYLEMARRAYQSHIRAYATHVANERHIFNIKELHLGHLAKS 692
Query: 537 FCFSSPP-KVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDD 584
F P K+N+ + KK K E G + G DD
Sbjct: 693 FALRDRPGKINVPGLRPGKEDTKKDFKAERKSAGGKKRKATGYGGGRDD 741
Score = 108 (43.1 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 34/104 (32%), Positives = 51/104 (49%)
Query: 486 QSHLEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVHRLDLQAVAASFCFSSPP 543
Q LE+ +N + A+ AY+S+I AY +H + + IFN+ L L +A SF P
Sbjct: 640 QLELERWALDNPEYLEMARRAYQSHIRAYATHVANERHIFNIKELHLGHLAKSFALRDRP 699
Query: 544 -KVNLTIDSSASKFRKKTRKVEGSRNGFSE--SNPYGRQRDEDD 584
K+N+ + KK K E G + + YG RD+DD
Sbjct: 700 GKINVPGLRPGKEDTKKDFKAERKSAGGKKRKATGYGGGRDDDD 743
Score = 81 (33.6 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 311 DVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKK--VM--VFFSSC-NSVKFH 365
D D +V + L+Q Y +V + R + L +F+KR +K VM + F SC +SV FH
Sbjct: 400 DKDGDAFRVPAQ-LKQSYAIVAAKLRLVTLTAFMKRTFMRKGSVMKAIIFVSCADSVNFH 458
Query: 366 SEL 368
E+
Sbjct: 459 FEV 461
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 490 (177.5 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 129/382 (33%), Positives = 203/382 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F S+GLS F+ I G++ T IQ + +P ++ GKDV+ ARTGSGKT FLIP E
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + + G +++ PTRELA+QT K+L K+ L++GG + + +
Sbjct: 158 LKT--HSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHE 215
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++++ATPGRL+ H+ ++++ +D D + E F E++++I+ LP Q
Sbjct: 216 NPDIIIATPGRLV-HVAVEMNLKLQSVE--YVDSIDWLFEMGFAEQLQEIIGRLPG-GHQ 271
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVD-DGRTKVTNEGLQQGYCVV-PSAKRFILLY 341
T LFSAT K + + AR T PV I +D D + NE L+ + +V K +LL+
Sbjct: 272 TVLFSATLPKLLVEFARAGL-TEPVLIRLDVDAKL---NEQLKTSFFLVREDTKAAVLLH 327
Query: 342 SFLKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
L R + + + +VF ++ + ++ SELL V C I+ Q R F
Sbjct: 328 --LLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHN 385
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ L+ TD+AARGLDIP +D ++ Y P + K ++HRVGR AR G G A + P+E
Sbjct: 386 KCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARA-GRSGTAYSLVAPDE 444
Query: 459 LQFLR----YLKAAKVPVKEYE 476
+ +L +L A P + +E
Sbjct: 445 VPYLLDLHLFLGRALTPARPHE 466
Score = 41 (19.5 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 499 LNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSS 541
L++ A +A + Y+ + + S + I LDL + FSS
Sbjct: 503 LSRVADNAQQQYVRSRPAPSPESIKRAKELDLTGLGLHPLFSS 545
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 125/369 (33%), Positives = 198/369 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGL +A+ D+GF+ T IQ A+P ++ G +++G A TG+GKT A+L+P ++
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQT-HAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+ + A V+++ PTRELA+Q VAK L KY V GG A + +
Sbjct: 64 IQRGKKAQ-----VLIVTPTRELALQVADEVAK-LGKYLKVRALAVYGGQAIERQIRGLR 117
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+GV ++V TPGR+LDH+ K F +K +++DEAD +L+ F +++ I+ L + +
Sbjct: 118 QGVEVIVGTPGRILDHI-GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR-Q 175
Query: 283 QTALFSATQTKKVEDLARL---SFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
QT LFSAT ++ + + ++T + GR K T ++Q Y +P ++
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLV-----GREK-TVPAIRQVYYELPETEKIEG 229
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L S L L + +VF + V E L + +HG Q++RT T F +
Sbjct: 230 LVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGK 289
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDVAARGLDIP V ++ +D P P+ YIHR+GRT R G G A+ + E
Sbjct: 290 TELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRA-GREGKAITLINYRER 348
Query: 460 QFLRYLKAA 468
+ L+ ++ A
Sbjct: 349 KLLKAIEEA 357
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 125/369 (33%), Positives = 198/369 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGL +A+ D+GF+ T IQ A+P ++ G +++G A TG+GKT A+L+P ++
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQT-HAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+ + A V+++ PTRELA+Q VAK L KY V GG A + +
Sbjct: 64 IQRGKKAQ-----VLIVTPTRELALQVADEVAK-LGKYLKVRALAVYGGQAIERQIRGLR 117
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+GV ++V TPGR+LDH+ K F +K +++DEAD +L+ F +++ I+ L + +
Sbjct: 118 QGVEVIVGTPGRILDHI-GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR-Q 175
Query: 283 QTALFSATQTKKVEDLARL---SFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
QT LFSAT ++ + + ++T + GR K T ++Q Y +P ++
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLV-----GREK-TVPAIRQVYYELPETEKIEG 229
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L S L L + +VF + V E L + +HG Q++RT T F +
Sbjct: 230 LVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGK 289
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDVAARGLDIP V ++ +D P P+ YIHR+GRT R G G A+ + E
Sbjct: 290 TELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRA-GREGKAITLINYRER 348
Query: 460 QFLRYLKAA 468
+ L+ ++ A
Sbjct: 349 KLLKAIEEA 357
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 484 (175.4 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 124/367 (33%), Positives = 195/367 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP + G+D++G A+TGSGKT AF+ P
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q HA K K Y+ ++V V GG + +A+
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA-VYGGGSMWEQAK 371
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 372 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-R 429
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYI---DVDDGRTKVTN--EGLQQGYCVVPSA 334
DRQT LFSAT KK+E LAR P+ + D+ + VT E L G PS
Sbjct: 430 PDRQTLLFSATFRKKIEKLAR-DILIDPIRVVQGDIGEANEDVTQIVEILHSG----PSK 484
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+ L ++ S V++F + + + + L+ + +HG Q +R D
Sbjct: 485 WNW-LTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F K + +L+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A L
Sbjct: 544 FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTLL 602
Query: 455 IPEELQF 461
P++ F
Sbjct: 603 TPKDSNF 609
Score = 47 (21.6 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 543 PKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDD 584
PK+ +DSS K K K + + +GF+ P R++ D
Sbjct: 898 PKMEPKVDSS--KMDKVDSKTDKTADGFAVPEPPKRKKSRWD 937
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 501 (181.4 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 123/367 (33%), Positives = 201/367 (54%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
TSF G + +A++ + T IQA+AVP + G+D++G A+TGSGKT AF+ P +
Sbjct: 269 TSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPML 328
Query: 162 -ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
++ Q P +G +++ PTREL++Q + AK K ++ V GG ++ +++
Sbjct: 329 MHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKA 388
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ +G ++VATPGR++D ++ K + + LV+DEADR+ FE ++R I + +
Sbjct: 389 LEQGAEIIVATPGRMIDMVK-MKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHV-RP 446
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA-KRFIL 339
DRQ +FSAT K++E LAR + PV I G N+ + Q V P+ +++
Sbjct: 447 DRQCLMFSATFKKRIERLAR-DVLSDPVRIV--QGDLNEANQDITQSVYVFPNPLQKWNW 503
Query: 340 LYSFLKRNLSK-KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
L L + LS+ V++F + + S L + +C +HG Q R F +
Sbjct: 504 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRK 563
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
E IL+ TDVAARGLDIP + +V YD + + + HR+GRT R G +GNA + ++
Sbjct: 564 ECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRA-GEKGNAYTLVTDKD 622
Query: 459 LQFLRYL 465
+F +L
Sbjct: 623 KEFAGHL 629
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 131/391 (33%), Positives = 214/391 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF +L LS AI D+G+ T IQ +A+P ++ GKD++ AA+TG+GKT +F++P +E
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 163 LLYNAQFAPRNGT------GVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216
L N+Q+ +++ PTRELA+Q A KY + + GG +
Sbjct: 62 QL-NSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQE 120
Query: 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276
+ +R++ GV++LVATPGRLLD + + + + L LV+DEADR+L+ F +++ +I++
Sbjct: 121 QKQRLIWGVDILVATPGRLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIER 179
Query: 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336
LP+ RQ LFSAT +++V LA+ + PV I + G K + ++Q V A +
Sbjct: 180 LPEH-RQNLLFSATMSEEVRGLAKRTIHK-PVEISI--GADKASKPKIEQWLVTVDKANK 235
Query: 337 FILLYSFLKRNLSKKVMVFFSSCN-SVKFHSEL-LRYIQVDCFDIHGKQKQQKRTTTFFD 394
LL + ++ ++F + + + K S+L R I + IH + Q R D
Sbjct: 236 SALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAE--SIHSGRAQDIREKILND 293
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F + L+ T +AARGLDI + ++ YD P + +YIHR+GRT R GA G A+ +
Sbjct: 294 FKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRA-GASGEAISLV 352
Query: 455 IPEELQFLRYLKAAK---VPVKEYE-FDQKK 481
+ + L +++ + KE+E F KK
Sbjct: 353 SKDNFRELCAIESRLGHIIERKEFEEFPVKK 383
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 124/380 (32%), Positives = 208/380 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+ L + + +I+++G++ T+IQ +P + KD++G + TGSGKT F+IP ++
Sbjct: 157 TFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQ 216
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L N Q +VI PTREL IQ + L + + GG ++ +
Sbjct: 217 DLKVNKQ-----SFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNL 271
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K N++V+TPGR+LDHL NTKGF KNLK LV DEAD++L +FE + +++ +LP +
Sbjct: 272 AKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPP-N 330
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
R T LFSAT TK V L + + PV ++V + + V+ L + Y +P ++ L
Sbjct: 331 RITFLFSATMTKNVAKLKKACLKN-PVKVEVSNKYSTVST--LIETYIFLPLKYKYTYLS 387
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
S ++ +++F ++C + + + R + + +HGK Q +R ++ F +
Sbjct: 388 SLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYN 447
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ- 460
IL+ T V ARGLD+ + ++ +D KEYIHRVGRTAR G G ++ F+ +++
Sbjct: 448 ILISTQVGARGLDLQDIKIVINFDICS-CKEYIHRVGRTARA-GRSGKSITFVTQYDVEN 505
Query: 461 FLRYLKAAKVPVKEY-EFDQ 479
FL K + ++ + D+
Sbjct: 506 FLAIEKQLNKKIDKFTDLDE 525
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 124/380 (32%), Positives = 208/380 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+ L + + +I+++G++ T+IQ +P + KD++G + TGSGKT F+IP ++
Sbjct: 157 TFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQ 216
Query: 163 -LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
L N Q +VI PTREL IQ + L + + GG ++ +
Sbjct: 217 DLKVNKQ-----SFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNL 271
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
K N++V+TPGR+LDHL NTKGF KNLK LV DEAD++L +FE + +++ +LP +
Sbjct: 272 AKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPP-N 330
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
R T LFSAT TK V L + + PV ++V + + V+ L + Y +P ++ L
Sbjct: 331 RITFLFSATMTKNVAKLKKACLKN-PVKVEVSNKYSTVST--LIETYIFLPLKYKYTYLS 387
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
S ++ +++F ++C + + + R + + +HGK Q +R ++ F +
Sbjct: 388 SLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYN 447
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ- 460
IL+ T V ARGLD+ + ++ +D KEYIHRVGRTAR G G ++ F+ +++
Sbjct: 448 ILISTQVGARGLDLQDIKIVINFDICS-CKEYIHRVGRTARA-GRSGKSITFVTQYDVEN 505
Query: 461 FLRYLKAAKVPVKEY-EFDQ 479
FL K + ++ + D+
Sbjct: 506 FLAIEKQLNKKIDKFTDLDE 525
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 130/407 (31%), Positives = 217/407 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F S L +AI + + T+IQ +++P ++ DV+ A+TG+GKT AF +P ++
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L + Q + +V+ PTRELA Q H ++ T+G+ GG + + + +
Sbjct: 66 QLISVQPC-KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
GV++L+ATPGRLLD L+ T+ N++ LV DEADR+L+ F+EE+ QI + LPK +
Sbjct: 125 VGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT-K 182
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
QT LFSAT + +++ + P +++D+ + K ++ Q Y V KR + +
Sbjct: 183 QTLLFSATFADDIYKMSK-NILVEPKMVEIDE-KNKAADDVEQLVYGVDADRKRELTSFL 240
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
RN K+V+VF + ++ + V IHG + Q R +F + +
Sbjct: 241 IGSRNW-KQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRA 299
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFL 462
L+ TDVAARG+DI + ++ Y+ P ++Y+HR+GRTAR G G A+ + P E
Sbjct: 300 LIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARA-GNSGLAVSLVSPGE---- 354
Query: 463 RYLKAAKVPVKEYEFDQKKLANVQSHLEKLV-ANNYYLNK--SAKDA 506
+L A + + + Q+ L + L K+ +N +NK + KDA
Sbjct: 355 EWLLTAIEELLDIQLLQQWLPGYELDLTKIANSNKRPINKKNARKDA 401
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 130/407 (31%), Positives = 217/407 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F S L +AI + + T+IQ +++P ++ DV+ A+TG+GKT AF +P ++
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L + Q + +V+ PTRELA Q H ++ T+G+ GG + + + +
Sbjct: 66 QLISVQPC-KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
GV++L+ATPGRLLD L+ T+ N++ LV DEADR+L+ F+EE+ QI + LPK +
Sbjct: 125 VGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT-K 182
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
QT LFSAT + +++ + P +++D+ + K ++ Q Y V KR + +
Sbjct: 183 QTLLFSATFADDIYKMSK-NILVEPKMVEIDE-KNKAADDVEQLVYGVDADRKRELTSFL 240
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
RN K+V+VF + ++ + V IHG + Q R +F + +
Sbjct: 241 IGSRNW-KQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRA 299
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFL 462
L+ TDVAARG+DI + ++ Y+ P ++Y+HR+GRTAR G G A+ + P E
Sbjct: 300 LIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARA-GNSGLAVSLVSPGE---- 354
Query: 463 RYLKAAKVPVKEYEFDQKKLANVQSHLEKLV-ANNYYLNK--SAKDA 506
+L A + + + Q+ L + L K+ +N +NK + KDA
Sbjct: 355 EWLLTAIEELLDIQLLQQWLPGYELDLTKIANSNKRPINKKNARKDA 401
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 120/391 (30%), Positives = 210/391 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+SLGLS+ + + MG T +Q + +P ++ G+D +G A+TGSGKT AF++P ++
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L + G +V+ PTRELA Q + L K +++GG + +
Sbjct: 63 KLSEDPY----GVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELS 118
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPK 279
K +++VATPGRL DH++++ ++ L++DEADR+LE +F +++ I+ +P
Sbjct: 119 KKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPA 178
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR--F 337
K RQT LFSAT T ++ L ++ + D +T E L Q + + P + +
Sbjct: 179 K-RQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTV---EELDQRFILTPEKVKDAY 234
Query: 338 I--LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
+ L+ +F + +++F ++C S + + +LR +H KQ++R F
Sbjct: 235 LVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKF 294
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
IL+ TDVAARGLDIP V ++ ++ P PK YIHRVGRTAR G G ++ +
Sbjct: 295 KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRNGVSITLVT 353
Query: 456 PEELQFLRYLKAA-KVPVKEYEFDQKKLANV 485
++ + ++ + +KE+ ++K++ +
Sbjct: 354 QYDIHLINAIEEQNQTKLKEFPIEEKEVLKI 384
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 484 (175.4 bits), Expect = 3.5e-47, Sum P(2) = 3.5e-47
Identities = 124/367 (33%), Positives = 195/367 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP + G+D++G A+TGSGKT AF+ P
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q HA K K Y+ ++V V GG + +A+
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA-VYGGGSMWEQAK 371
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 372 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-R 429
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYI---DVDDGRTKVTN--EGLQQGYCVVPSA 334
DRQT LFSAT KK+E LAR P+ + D+ + VT E L G PS
Sbjct: 430 PDRQTLLFSATFRKKIEKLAR-DILIDPIRVVQGDIGEANEDVTQIVEILHSG----PSK 484
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+ L ++ S V++F + + + + L+ + +HG Q +R D
Sbjct: 485 WNW-LTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F K + +L+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A L
Sbjct: 544 FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTLL 602
Query: 455 IPEELQF 461
P++ F
Sbjct: 603 TPKDSNF 609
Score = 44 (20.5 bits), Expect = 3.5e-47, Sum P(2) = 3.5e-47
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 544 KVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDD 584
KV+ +DS K KT K + +GF+ P R++ D
Sbjct: 895 KVDPKVDSKMDKMDSKTDK---TADGFAVPEPPKRKKSRWD 932
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 484 (175.4 bits), Expect = 3.8e-47, Sum P(2) = 3.8e-47
Identities = 124/367 (33%), Positives = 195/367 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP + G+D++G A+TGSGKT AF+ P
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q HA K K Y+ ++V V GG + +A+
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVA-VYGGGSMWEQAK 371
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 372 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-R 429
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYI---DVDDGRTKVTN--EGLQQGYCVVPSA 334
DRQT LFSAT KK+E LAR P+ + D+ + VT E L G PS
Sbjct: 430 PDRQTLLFSATFRKKIEKLAR-DILIDPIRVVQGDIGEANEDVTQIVEILHSG----PSK 484
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+ L ++ S V++F + + + + L+ + +HG Q +R D
Sbjct: 485 WNW-LTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F K + +L+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A L
Sbjct: 544 FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTLL 602
Query: 455 IPEELQF 461
P++ F
Sbjct: 603 TPKDSNF 609
Score = 44 (20.5 bits), Expect = 3.8e-47, Sum P(2) = 3.8e-47
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 543 PKVNLTIDSSASKFRKKTRKVEGSRNGFSESNPYGRQRDEDD 584
PK+ +DS+ K K K + + +GF+ P R++ D
Sbjct: 902 PKMEPKVDSN--KMDKVDSKTDKTADGFAVPEPPKRKKSRWD 941
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 126/365 (34%), Positives = 197/365 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F + + + + + G + + IQ + +P ++ G+D++G A TGSGKTL F +P V
Sbjct: 222 TTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMV 281
Query: 162 --ELLYNAQFAPRNGTGV--IVICPTRELAIQTHAVAKDLLKYHSQTVG-------LVIG 210
L + G G +++CP+RELA QT+ + + G L IG
Sbjct: 282 LFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIG 341
Query: 211 GSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEM 270
G R + KGV++++ATPGRLLD L N K +K K L +DEADR+++ FE+++
Sbjct: 342 GIDLREQEHIFKKGVHMIIATPGRLLD-LLNKKKINFKLCKYLGLDEADRLIDLGFEDDI 400
Query: 271 RQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGL-QQGYC 329
R ++ + RQT LFSAT KK+++ AR S PV ++V GR N + Q+
Sbjct: 401 RSVLDNFTNQ-RQTLLFSATMPKKIQEFAR-SALVLPVEVNV--GRAGAANLNVTQEVEF 456
Query: 330 VVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRT 389
V P AK + L L++ V++F + V E L QV+ IHG + Q +R
Sbjct: 457 VKPEAK-IVYLLECLQKT-PPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERE 514
Query: 390 TTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGN 449
+ F + +K +L+ TDVA++GLD P + ++ +D P E + YIHR+GRT R G +G
Sbjct: 515 SAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGR-RGNKGV 573
Query: 450 ALLFL 454
A F+
Sbjct: 574 ATTFI 578
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 132/376 (35%), Positives = 207/376 (55%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
FD+LGLS AI + G+Q +TQ+Q + +P +VGKD++ A+TG+GKT AF +P +E
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEAE 219
L A+ A + +V+ PTRELAIQ V ++ KY SQ + L V GG+ + +
Sbjct: 63 LA-AKPADKPLLRALVMTPTRELAIQ---VCANIQKY-SQFLPLKTLAVYGGANMNPQRK 117
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +GV++LVATPGRL D + ++ LVIDEADR+L+ F ++ ++ +L+
Sbjct: 118 GVEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAP 176
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
QT LFSAT + V+ L+ P +++V + T T E L V ++ L
Sbjct: 177 V-HQTMLFSATYSDAVKQLSH-KMLNQPQWVNVAENTTASTVEQLVYR---VDKRRKAEL 231
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + RN ++V+VF S+ + + L + HG + Q R DF +
Sbjct: 232 LSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGK 291
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDVAARGLDI A+ ++ + P ++Y+HR+GRT R G G A+ F+ P +
Sbjct: 292 LRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRA-GLSGRAISFVSPADD 350
Query: 460 QFLRYLKAA---KVPV 472
+ L ++A K+PV
Sbjct: 351 EMLAEIEALIGEKLPV 366
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 132/376 (35%), Positives = 207/376 (55%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
FD+LGLS AI + G+Q +TQ+Q + +P +VGKD++ A+TG+GKT AF +P +E
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEAE 219
L A+ A + +V+ PTRELAIQ V ++ KY SQ + L V GG+ + +
Sbjct: 63 LA-AKPADKPLLRALVMTPTRELAIQ---VCANIQKY-SQFLPLKTLAVYGGANMNPQRK 117
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +GV++LVATPGRL D + ++ LVIDEADR+L+ F ++ ++ +L+
Sbjct: 118 GVEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAP 176
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
QT LFSAT + V+ L+ P +++V + T T E L V ++ L
Sbjct: 177 V-HQTMLFSATYSDAVKQLSH-KMLNQPQWVNVAENTTASTVEQLVYR---VDKRRKAEL 231
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + RN ++V+VF S+ + + L + HG + Q R DF +
Sbjct: 232 LSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGK 291
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDVAARGLDI A+ ++ + P ++Y+HR+GRT R G G A+ F+ P +
Sbjct: 292 LRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRA-GLSGRAISFVSPADD 350
Query: 460 QFLRYLKAA---KVPV 472
+ L ++A K+PV
Sbjct: 351 EMLAEIEALIGEKLPV 366
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 124/366 (33%), Positives = 202/366 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF LGLS + + +G+Q T IQ +A+P ++ G+D++ AA+TG+GKT +F++P +E
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEA 218
L Q + +++ PTRELA+Q VA+ + +Y T GL V GG + +
Sbjct: 62 KLRQGQTQRKKRVRALILVPTRELAMQ---VAEKVEQYGKDT-GLKSLAVFGGVDEQAQK 117
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+R++ GV++LVATPGRL+D L + ++ ++ +V+DEADR+L+ F E + +I+ LP
Sbjct: 118 QRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI 338
+ Q LFSAT ++KV +LA+ + + P I + + +N + Q V +
Sbjct: 177 S-EVQFLLFSATLSRKVRELAKTAVRD-PHEISIAANQASKSN--ISQWLITVDKDTKSA 232
Query: 339 LLYSFLKRNLSKKVMVFFSSCN-SVKFHSEL-LRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
LL + + ++F + + + K S+L R I + F H + Q R DF
Sbjct: 233 LLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAF--HSGRSQAIRAQLLEDFK 290
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ L+ T VAARG+DI + +V YD P EY+HR+GRT R E A G A+ F+
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAE-AVGEAISFVSK 349
Query: 457 EELQFL 462
+ + L
Sbjct: 350 DNFKNL 355
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 124/366 (33%), Positives = 202/366 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF LGLS + + +G+Q T IQ +A+P ++ G+D++ AA+TG+GKT +F++P +E
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEA 218
L Q + +++ PTRELA+Q VA+ + +Y T GL V GG + +
Sbjct: 62 KLRQGQTQRKKRVRALILVPTRELAMQ---VAEKVEQYGKDT-GLKSLAVFGGVDEQAQK 117
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+R++ GV++LVATPGRL+D L + ++ ++ +V+DEADR+L+ F E + +I+ LP
Sbjct: 118 QRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI 338
+ Q LFSAT ++KV +LA+ + + P I + + +N + Q V +
Sbjct: 177 S-EVQFLLFSATLSRKVRELAKTAVRD-PHEISIAANQASKSN--ISQWLITVDKDTKSA 232
Query: 339 LLYSFLKRNLSKKVMVFFSSCN-SVKFHSEL-LRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
LL + + ++F + + + K S+L R I + F H + Q R DF
Sbjct: 233 LLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAF--HSGRSQAIRAQLLEDFK 290
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ L+ T VAARG+DI + +V YD P EY+HR+GRT R E A G A+ F+
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAE-AVGEAISFVSK 349
Query: 457 EELQFL 462
+ + L
Sbjct: 350 DNFKNL 355
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 486 (176.1 bits), Expect = 7.0e-47, Sum P(2) = 7.0e-47
Identities = 124/367 (33%), Positives = 195/367 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP + G+D++G A+TGSGKT AF+ P
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q HA K K Y+ ++V V GG + +A+
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA-VYGGGSMWEQAK 371
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 372 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-R 429
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYI---DVDDGRTKVTN--EGLQQGYCVVPSA 334
DRQT LFSAT KK+E LAR P+ + D+ + VT E L G PS
Sbjct: 430 PDRQTLLFSATFRKKIEKLAR-DILIDPIRVVQGDIGEANEDVTQIVEILHSG----PSK 484
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+ L ++ S V++F + + + + L+ + +HG Q +R D
Sbjct: 485 WNW-LTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILD 543
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F K + +L+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A L
Sbjct: 544 FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTLL 602
Query: 455 IPEELQF 461
P++ F
Sbjct: 603 TPKDSNF 609
Score = 39 (18.8 bits), Expect = 7.0e-47, Sum P(2) = 7.0e-47
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 552 SASKFRKKTRKVEGSRNGFSESNPYGRQRDEDDK 585
SAS+ ++R RNG S + R+ D K
Sbjct: 862 SASR-HGESRGANDGRNGESRKEGFNRENRMDPK 894
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 128/389 (32%), Positives = 212/389 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+FD G ++ ++ GF T IQ++ P + G+DV+G A TGSGKTL + +PA+
Sbjct: 126 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 185
Query: 163 LLYNAQ--FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ NAQ AP +G V+++ PTRELA+Q A K V GG + +
Sbjct: 186 HI-NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRD 244
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ +GV + +ATPGRL+D L++ K + + + LV+DEADR+L+ FE ++R+I+ + +
Sbjct: 245 LSRGVEVCIATPGRLIDMLESGKTNL-RRVTYLVLDEADRMLDMGFEPQIRKIIGQI-RP 302
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQGYCVVP-SAKRFI 338
DRQT ++SAT K+V ++A Q +I V+ G ++ N + Q VV S KR
Sbjct: 303 DRQTLMWSATWPKEVRNMAADFLQD---FIQVNIGSLDLSANHRITQIVEVVSESEKRDR 359
Query: 339 LLYSFLK----RNLSKKVMVFFSSCNSVKFHSELLRYIQVD---CFDIHGKQKQQKRTTT 391
++ K ++ K+++F + + E+ R+++ D IHG ++Q +R
Sbjct: 360 MIRHMEKVMDGKDSKNKILIFVGT---KRVADEITRFLRQDGWPALSIHGDKQQNERDWV 416
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F + I++ TDVA+RG+D+ + ++ YD P+ ++YIHR+GRT R GA+G A+
Sbjct: 417 LDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRA-GAKGTAI 475
Query: 452 LFLIPEELQFLRYLKAAKVPVKEYEFDQK 480
F E + R L K+ E D +
Sbjct: 476 TFFTTENSKQARDLLGVLQEAKQ-EIDPR 503
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 123/351 (35%), Positives = 187/351 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP--- 159
SF + + + G + T IQ + +P ++ G+D++G A TGSGKTL F++P
Sbjct: 178 SFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 237
Query: 160 -AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVG-------LVIGG 211
A+E Y+ F G ++ICP+RELA QTH + + K H Q G L +GG
Sbjct: 238 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSK-HLQACGMPEIRSCLAMGG 296
Query: 212 SARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMR 271
+ I +GV+++VATPGRL+D L K + L +DEADR+++ FEE++R
Sbjct: 297 LPVSEALDVISRGVHIVVATPGRLMDMLDK-KILTLDMCRYLCMDEADRMIDMGFEEDVR 355
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
I K RQT LFSAT KK+++ AR S PV I+V GR + + Q V
Sbjct: 356 TIFSFF-KGQRQTLLFSATMPKKIQNFAR-SALVKPVTINV--GRAGAASMNVTQQVEYV 411
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
+ + L L++ + V++F V E L V+ IHG + Q++R+
Sbjct: 412 KQEAKVVYLLDCLQKT-APPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRA 470
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
+ +K +L+ TDVA++GLD P V ++ YD PD+ + Y+HR+GRT R
Sbjct: 471 VDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGR 521
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 464 (168.4 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 119/361 (32%), Positives = 187/361 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F + IQ F T IQA+ P + G D++G A+TGSGKTL++L+PA+
Sbjct: 83 NFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 142
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + F R +G +V+ PTRELA Q VA + + + GG+ + + +
Sbjct: 143 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDL 202
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L+ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 203 ERGVEICIATPGRLIDFLEAGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 260
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQ-QGYCV-VPSAKRFIL 339
RQT ++SAT K+V LA F V+I++ + LQ C V + I
Sbjct: 261 RQTLMWSATWPKEVRQLAE-DFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIR 319
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + K +VF + + +R IHG + QQ+R +F +
Sbjct: 320 LMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 379
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVA+RGLD+ V +++ YD P+ ++YIHR+GRTAR G A F P +
Sbjct: 380 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKT-GTAYTFFTPNNI 438
Query: 460 Q 460
+
Sbjct: 439 K 439
Score = 41 (19.5 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 23/88 (26%), Positives = 36/88 (40%)
Query: 506 AYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFR--KKTRKV 563
AY ++ N + D+ +V R QA+ +P + L D + + R ++ R
Sbjct: 429 AY-TFFTPNNIKQVNDLISVLREANQAI-------NPKLLQLIEDRGSGRSRGDRRDRYS 480
Query: 564 EGSRNGFS---ESNPYGRQRDEDDKRQF 588
G R GFS E + R KR F
Sbjct: 481 AGKRGGFSSFRERENFERTYGALGKRDF 508
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 464 (168.4 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 119/361 (32%), Positives = 187/361 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F + IQ F T IQA+ P + G D++G A+TGSGKTL++L+PA+
Sbjct: 91 NFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 150
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + F R +G +V+ PTRELA Q VA + + + GG+ + + +
Sbjct: 151 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDL 210
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L+ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 211 ERGVEICIATPGRLIDFLEAGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 268
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQ-QGYCV-VPSAKRFIL 339
RQT ++SAT K+V LA F V+I++ + LQ C V + I
Sbjct: 269 RQTLMWSATWPKEVRQLAE-DFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIR 327
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + K +VF + + +R IHG + QQ+R +F +
Sbjct: 328 LMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 387
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVA+RGLD+ V +++ YD P+ ++YIHR+GRTAR G A F P +
Sbjct: 388 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKT-GTAYTFFTPNNI 446
Query: 460 Q 460
+
Sbjct: 447 K 447
Score = 41 (19.5 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 23/88 (26%), Positives = 36/88 (40%)
Query: 506 AYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFR--KKTRKV 563
AY ++ N + D+ +V R QA+ +P + L D + + R ++ R
Sbjct: 437 AY-TFFTPNNIKQVNDLISVLREANQAI-------NPKLLQLIEDRGSGRSRGDRRDRYS 488
Query: 564 EGSRNGFS---ESNPYGRQRDEDDKRQF 588
G R GFS E + R KR F
Sbjct: 489 AGKRGGFSSFRERENFERTYGALGKRDF 516
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 123/390 (31%), Positives = 208/390 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGLS + +G + T +Q +P ++ G+D LG A+TGSGKT AF++P ++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + G +V+ PTRELA Q + L K +++GG +A + +
Sbjct: 64 LSEDPY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPKK 280
++++ATPGRL DHL+++ F K ++ LV+DEADR+LE +F ++ I+ +P +
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTR 179
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR--FI 338
RQT LFSAT T +++L L+ P + + V E L Q Y +VP + ++
Sbjct: 180 -RQTLLFSATLTDTLKELQGLA-TNQPFFWEAQAPVRTV--EQLDQRYLLVPEKVKDAYL 235
Query: 339 --LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
L+ +F + +++F ++C + + +LR +H KQ++R F
Sbjct: 236 VHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFK 295
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ IL+ TDVA+RGLDIP V ++ ++ P PK YIHRVGRTAR G +G A+ +
Sbjct: 296 SSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRQGQAITLVTQ 354
Query: 457 EELQFLRYLKAA-KVPVKEYEFDQKKLANV 485
++ + ++ K ++E ++ K+ +
Sbjct: 355 YDIHLVHAIEEQIKKQLEELSVEEAKVLQI 384
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 122/390 (31%), Positives = 207/390 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGLS + +G + T +Q +P ++ G+D LG A+TGSGKT AF++P ++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + G +V+ PTRELA Q + L K +++GG +A + +
Sbjct: 64 LSEDPY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPKK 280
++++ATPGRL DHL+++ F K ++ LV+DEADR+LE +F ++ I+ +P +
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
RQT LFSAT T + +L L+ P + + + V E L Q Y +VP + L
Sbjct: 180 -RQTLLFSATLTDTLRELQGLA-TNQPFFWEAQAPVSTV--EQLDQRYLLVPEKVKDAYL 235
Query: 341 YSFLKRNLSK----KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
++R + +++F ++C + + +LR +H KQ++R F
Sbjct: 236 VHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFK 295
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ IL+ TDVA+RGLDIP V ++ ++ P PK YIHRVGRTAR G +G A+ +
Sbjct: 296 SSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRQGQAITLVTQ 354
Query: 457 EELQFLRYLKAA-KVPVKEYEFDQKKLANV 485
++ + ++ K ++E+ ++ ++ +
Sbjct: 355 YDIHLVHAIEEQIKKKLEEFSVEEAEVLQI 384
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 122/390 (31%), Positives = 208/390 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F LGLS + +G + T +Q +P ++ G+D LG A+TGSGKT AF++P ++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + G +V+ PTRELA Q + L K +++GG +A + +
Sbjct: 64 LSEDPY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPKK 280
++++ATPGRL DHL+++ F K ++ LV+DEADR+LE +F ++ I+ +P +
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR--FI 338
RQT LFSAT T + +L L+ P + + V E L Q Y +VP + ++
Sbjct: 180 -RQTLLFSATLTDTLRELQSLA-TNQPFFWEAQAPVRTV--EQLDQRYLLVPEKVKDAYL 235
Query: 339 --LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
L+ +F + +++F ++C + + +LR +H KQ++R F
Sbjct: 236 VHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFK 295
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ IL+ TDVA+RGLDIP V ++ ++ P PK YIHRVGRTAR G +G A+ +
Sbjct: 296 SSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRQGQAITLVTQ 354
Query: 457 EELQFLRYLKAA-KVPVKEYEFDQKKLANV 485
++ + ++ K ++E+ ++ ++ +
Sbjct: 355 YDIHLVHAIEEQIKKKLEEFSVEEAEVLQI 384
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 485 (175.8 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 126/368 (34%), Positives = 196/368 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP + G+D++G A+TGSGKT AF+ P
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q HA K K Y+ ++V V GG + +A+
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA-VYGGGSMWEQAK 371
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 372 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-R 429
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYI---DVDDGRTKVTN--EGLQQGYCVVPSA 334
DRQT LFSAT KK+E LAR P+ + D+ + VT E L G PS
Sbjct: 430 PDRQTLLFSATFRKKIEKLAR-DILIDPIRVVQGDIGEANEDVTQIVEILHSG----PSK 484
Query: 335 KRFILLYSFLKRNLSKKVMVFFSS-CNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFF 393
+ L ++ S V++F + N+ + S L + + +HG Q +R
Sbjct: 485 WNW-LTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGH-NLGLLHGDMDQSERNKVIS 542
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
DF K + +L+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTL 601
Query: 454 LIPEELQF 461
L P++ F
Sbjct: 602 LTPKDSNF 609
Score = 37 (18.1 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 559 KTRKVEGSRNGFSESNPYGRQRDEDDK 585
++R RNG S + R+ D K
Sbjct: 868 ESRGANDGRNGESRKEGFNRENKMDPK 894
>UNIPROTKB|G4MSR4 [details] [associations]
symbol:MGG_07099 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_003715292.1 EnsemblFungi:MGG_07099T0
GeneID:2682984 KEGG:mgr:MGG_07099 Uniprot:G4MSR4
Length = 717
Score = 347 (127.2 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 105/302 (34%), Positives = 155/302 (51%)
Query: 109 LSQHTFRAIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNA 167
+ + +AI DM ++ MT +Q+ + P + GKD++ A+TG+GKTLAFLIP ++ + +A
Sbjct: 84 IDESIIKAITVDMRYEDMTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFLIPVIQKILDA 143
Query: 168 -------------QFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214
+FA R I+I PTRELA Q A L + + TV +GG+ +
Sbjct: 144 DPSLKEVSRGRPRRFAQRQSIKAIIISPTRELAEQIGKEATRLCQRNGVTVQTAVGGTGK 203
Query: 215 RGEAERI-VKGVNLLVATPGRLLDHLQNT-KGFIYKNLKCLVIDEADRILEANFEEEMRQ 272
R RI ++G +LLV TPGRL D L + G N++ LV+DEADR+L+ FE E+R
Sbjct: 204 RESLRRIHMEGCHLLVGTPGRLNDLLSDELSGIDASNVQALVLDEADRMLDVGFENELRS 263
Query: 273 IMKLLPKKD---RQTALFSATQTKKVEDLARLSFQTTPV-YIDVDDGRTKVTNEGLQQGY 328
I+ +LP + RQT LFSAT K V LAR ++ T+E + Q
Sbjct: 264 IVDMLPDRQQVPRQTLLFSATLPKNVVGLARWYVDKQNFEFVQTVRADEIQTHERVPQFI 323
Query: 329 C-------VVPSAKRFILL-YSFLKRNLSK---KVMVFFSSCNSVKFHSELLRYIQVDCF 377
++P+A +L K + S+ K +VFF N V EL R + V
Sbjct: 324 VPTSSFENLLPAALELMLREIRAAKNDPSQPPFKAIVFFPFTNMVAMAGELFRELAVQIP 383
Query: 378 DI 379
D+
Sbjct: 384 DL 385
Score = 311 (114.5 bits), Expect = 6.0e-42, Sum P(2) = 6.0e-42
Identities = 79/201 (39%), Positives = 115/201 (57%)
Query: 102 TSFDSLG---LSQHTFRAIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157
T F L + + +AI DM ++ MT +Q+ + P + GKD++ A+TG+GKTLAFL
Sbjct: 74 TKFSDLAKANIDESIIKAITVDMRYEDMTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFL 133
Query: 158 IPAVELLYNA-------------QFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT 204
IP ++ + +A +FA R I+I PTRELA Q A L + + T
Sbjct: 134 IPVIQKILDADPSLKEVSRGRPRRFAQRQSIKAIIISPTRELAEQIGKEATRLCQRNGVT 193
Query: 205 VGLVIGGSARRGEAERI-VKGVNLLVATPGRLLDHLQNT-KGFIYKNLKCLVIDEADRIL 262
V +GG+ +R RI ++G +LLV TPGRL D L + G N++ LV+DEADR+L
Sbjct: 194 VQTAVGGTGKRESLRRIHMEGCHLLVGTPGRLNDLLSDELSGIDASNVQALVLDEADRML 253
Query: 263 EANFEEEMRQIMKLLPKKDRQ 283
+ FE E+R I+ +LP DRQ
Sbjct: 254 DVGFENELRSIVDMLP--DRQ 272
Score = 205 (77.2 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 50/129 (38%), Positives = 71/129 (55%)
Query: 351 KVMVFFSSCNSVKFHSELLRYIQV------DCFDIHGKQKQQKRTTTFFDFCKAEKGILL 404
K +VFF N V EL R + V + F IH + Q +RT F K++ GIL+
Sbjct: 357 KAIVFFPFTNMVAMAGELFRELAVQIPDLPEVFHIHAQLSQNQRTKAADYFRKSKSGILI 416
Query: 405 CTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRY 464
TDV ARG+D P V ++Q P + ++YIHR+GRTAR G G LF+ +L+ RY
Sbjct: 417 STDVTARGMDFPNVTHVIQVGLPPDQEQYIHRLGRTARA-GKDGQGWLFVPHYDLRDARY 475
Query: 465 LKAAKVPVK 473
+ +P+K
Sbjct: 476 M-LGDLPIK 483
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 475 (172.3 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 127/367 (34%), Positives = 187/367 (50%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
TSF G + I+ + T IQ + VP + G+D +G A+TGSGKT AF+ P
Sbjct: 257 TSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPIL 316
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
V ++ + P G +++CPTREL Q HA K K + V GG + +A+
Sbjct: 317 VHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKA 376
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 377 LQEGAEIVVCTPGRLIDHVKK-KATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHV-RP 434
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DRQT LFSAT KK+E LAR P I V G NE + Q V+ S +
Sbjct: 435 DRQTLLFSATFRKKIEKLAR-DILVDP--IRVVQGDIGEANEDITQIVEVLQSGQD---K 488
Query: 341 YSFLKRNLSK-----KVMVFFSS-CNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+ +L R L + V+VF + N + + L++ +HG Q +R D
Sbjct: 489 WGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQE-GYSLGLLHGDMDQSERNKVIAD 547
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F K +L+ TDVAARGLDIP++ +V YD + + HR+GRT R G +G A L
Sbjct: 548 FKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRA-GEKGVAYTLL 606
Query: 455 IPEELQF 461
++ F
Sbjct: 607 TTKDTSF 613
Score = 46 (21.3 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 534 AASFCFSSPPKVNLTIDSSASKFRKK--TRKVEGSRNGFSESNPYGRQRDEDDK 585
++S FS PP LT S F + S + S P +R DD+
Sbjct: 765 SSSSSFSMPPPPALTSGIKMSGFSSAGTLSSISDSYSSSSSKEPSRSERHSDDR 818
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 464 (168.4 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
Identities = 118/362 (32%), Positives = 196/362 (54%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F++ GL + I + GF+ + IQ ++P + G+D+L A+ G+GKT AF++PA+E
Sbjct: 49 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET 108
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
+ N + + +++ PTRELA+QT V K L K+ V + GG+ R + R+
Sbjct: 109 I-NPKVSKIQ---CLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQD 164
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
V+++V TPGR+LD L ++DEAD++L F + Q+++ PK DRQ
Sbjct: 165 PVHIVVGTPGRILD-LAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPK-DRQ 222
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS- 342
LFSAT V++ + + T P I++ D ++T G+ Q Y V ++ L +
Sbjct: 223 VMLFSATFPISVKEFSDKNM-TNPYEINLMD---ELTLRGITQYYAFVEEKQKVHCLNTL 278
Query: 343 FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402
F K +++ + +F +S N V+ ++ + + CF H K +QQ R F DF
Sbjct: 279 FSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRN 337
Query: 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFL 462
L+C+D+ RG+DI AV+ ++ +D P + Y+HR+GR+ R G G A+ LI E +F
Sbjct: 338 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR-YGHLGLAIN-LISWEDRFN 395
Query: 463 RY 464
Y
Sbjct: 396 LY 397
Score = 39 (18.8 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 498 YLNKSAKDAYRSYI-LAYNSHSMKDIFNVHRLD 529
YL++ + ++ LA N S +D FN++ ++
Sbjct: 368 YLHRIGRSGRYGHLGLAINLISWEDRFNLYNIE 400
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 119/381 (31%), Positives = 218/381 (57%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA-V 161
S + +G + +++++ T IQ + P + GKD++G A TGSGKTLAF++PA V
Sbjct: 114 SINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFV 173
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV---GLVIGGSARRGEA 218
+L +G V+V+ PTRELA Q + ++ +K+ +++ GG + G+
Sbjct: 174 HILAQPNLKYGDGPIVLVLAPTRELAEQ---IRQECIKFSTESKIRNTCAYGGVPKSGQI 230
Query: 219 ERIVKGVNLLVATPGRLLDHL-QNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ +GV++L+A PGRL+D L QN + + LV+DEAD++L+ FE ++R+I+ +
Sbjct: 231 YALKQGVHILIACPGRLIDLLEQNVTNLM--RVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
+ DRQT ++SAT K+V+ LA+ + P+ ++V T ++Q ++ ++
Sbjct: 289 -RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGS-LTLTACRSIKQEIYLLEEHEKI 346
Query: 338 ILLYSFLKRNL--SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
L S L+R + +++VF + + F ++ LR + IHG +KQ++R +F
Sbjct: 347 GNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEF 406
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
+ I++ TDVA+RGLDI V +++ +D P++ ++Y+HR+GRT R G+ G + FL
Sbjct: 407 KTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRA-GSHGASFTFLT 465
Query: 456 PEELQF----LRYLKAAKVPV 472
++ + ++ L+ ++ PV
Sbjct: 466 ADKYRLAKDLVKILRESEQPV 486
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 127/391 (32%), Positives = 204/391 (52%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F Q+ A+ D F T IQ + P + G+D++G A+TGSGKTLA+L+PA+
Sbjct: 91 AFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 150
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + + R +G +V+ PTRELA Q VA D K + GG+ + + +
Sbjct: 151 HINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDL 210
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L+ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 211 ERGVEICIATPGRLIDFLEAGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 268
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQGYCV-VPSAK--RF 337
RQT ++SAT K+V LA Q Y+ ++ G +++ N + Q V + S K +
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLQD---YVQINVGNLELSANHNILQIVDVCMESEKDHKL 325
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
I L + K ++F + + +R IHG + Q +R +F
Sbjct: 326 IQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS 385
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ IL+ TDVA+RGLD+ V +++ YD P+ ++Y+HR+GRTAR +G A F P
Sbjct: 386 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN-KGTAYTFFTPG 444
Query: 458 ELQFLRYLKAAKVPVKEYEFDQKKLANVQSH 488
L+ R L KV + + KL + H
Sbjct: 445 NLKQAREL--IKVLEEANQAINPKLMQLVDH 473
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 129/376 (34%), Positives = 208/376 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF SLGLS+ RAI+ G+ T +Q RA+P ++ G+D++ AA+TG+GKT F +P +E
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 163 LLY-------NAQFAPRNGTGVIVICPTRELAIQTHA----VAKDLLKYHSQTVGLVIGG 211
L+ + + PR V+V+ PTRELA Q H A+DL K+ S + GG
Sbjct: 62 RLFPNGVPDKSQRHGPRQPR-VLVLTPTRELAAQVHESFKLYARDL-KFVS---ACIFGG 116
Query: 212 SARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMR 271
+ + + +GV++LVA PGRLLD L +++ LV+DEADR+L+ F +++
Sbjct: 117 VGMNPQVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVK 175
Query: 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQG-YCV 330
+++ LP K RQ LFSAT + + LA P I+V T V E ++Q + +
Sbjct: 176 KVLARLPAK-RQNLLFSATFSNDITSLAGKLLHN-PERIEVTPPNTTV--ERIEQRVFRL 231
Query: 331 VPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTT 390
+ KR +L + + ++V+VF + + +E L + IHG + Q RT
Sbjct: 232 AANHKRSLLAH-LITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTK 290
Query: 391 TFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNA 450
DF + I++ TD+AARGLDI + +V ++ P+ ++Y+HR+GRT R G G A
Sbjct: 291 ALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRA-GRSGEA 349
Query: 451 LLFLIPEELQFLRYLK 466
+ + P+E + L+ ++
Sbjct: 350 ISLVAPDEEKLLKSIE 365
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 119/381 (31%), Positives = 218/381 (57%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA-V 161
S + +G + +++++ T IQ + P + GKD++G A TGSGKTLAF++PA V
Sbjct: 114 SINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFV 173
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV---GLVIGGSARRGEA 218
+L +G V+V+ PTRELA Q + ++ +K+ +++ GG + G+
Sbjct: 174 HILAQPNLKYGDGPIVLVLAPTRELAEQ---IRQECIKFSTESKIRNTCAYGGVPKSGQI 230
Query: 219 ERIVKGVNLLVATPGRLLDHL-QNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ +GV++L+A PGRL+D L QN + + LV+DEAD++L+ FE ++R+I+ +
Sbjct: 231 YALKQGVHILIACPGRLIDLLEQNVTNLM--RVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
+ DRQT ++SAT K+V+ LA+ + P+ ++V T ++Q ++ ++
Sbjct: 289 -RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGS-LTLTACRSIKQEIYLLEEHEKI 346
Query: 338 ILLYSFLKRNL--SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
L S L+R + +++VF + + F ++ LR + IHG +KQ++R +F
Sbjct: 347 GNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEF 406
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
+ I++ TDVA+RGLDI V +++ +D P++ ++Y+HR+GRT R G+ G + FL
Sbjct: 407 KTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRA-GSHGASFTFLT 465
Query: 456 PEELQF----LRYLKAAKVPV 472
++ + ++ L+ ++ PV
Sbjct: 466 ADKYRLAKDLVKILRESEQPV 486
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 135/421 (32%), Positives = 220/421 (52%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
S DS+GLS +A++ G++ +T IQ A+P + G D+L +A+TG+GKT AF +P ++
Sbjct: 2 SVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILD 61
Query: 163 LLYNAQFAPRNGT--------------G----VIVICPTRELAIQTHAVAKDLLKYHSQT 204
+ A A ++ T G +++ PTRELA Q K +Y
Sbjct: 62 AIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIK 121
Query: 205 VGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA 264
G+V GG + + + +G+++LVATPGRLL+HL + +K LV+DEADR+L+
Sbjct: 122 SGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLA-LRNVDLSQVKFLVLDEADRMLDM 180
Query: 265 NFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGL 324
F ++ +++ L K QT +FSAT + +V+ LA ++ P I V T T+ +
Sbjct: 181 GFLTDIEKLL-LAVKHKHQTLMFSATFSDRVKSLANQLLKS-PKTISVSKENT--TSGKI 236
Query: 325 QQG-YCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQ 383
+Q Y V KR LL + N ++V+VF + S ++ L+ + HG +
Sbjct: 237 KQAVYWVTEERKRE-LLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDK 295
Query: 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARG 443
Q R F + + +L+ TDVAARGLDIP + ++V + P P++Y+HRVGRT R
Sbjct: 296 TQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRA 355
Query: 444 EGARGNALLFLIPEELQFLRYL------KAAKVPVKEYEFDQKKLANVQSHLEKLVANNY 497
G G A+ + P++ +FL + K ++ YEF++ + + Q K + N
Sbjct: 356 -GKSGTAISLVSPKDERFLENIEQLIERKFERIVAPGYEFNRLEASEYQEATVKRDSKNR 414
Query: 498 Y 498
Y
Sbjct: 415 Y 415
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 490 (177.5 bits), Expect = 2.5e-46, P = 2.5e-46
Identities = 128/365 (35%), Positives = 194/365 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+ G S AI+ ++ T IQ +A+P ++ G+DV+G A+TGSGKT AF++P +
Sbjct: 229 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
Query: 163 LLYNAQFAPRNGTGVIVIC-PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + R+ + VIC PTRELA Q AK K + V V GG ++ + + +
Sbjct: 289 HIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL 348
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
G ++VATPGRL+D L+ K LV+DEADR+ + FE ++R I+ + + D
Sbjct: 349 KAGCEIVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQI-RPD 406
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS-AKRFILL 340
RQT LFSAT KVE LAR + P+ + V G + NE + Q V+PS A++ L
Sbjct: 407 RQTLLFSATMPWKVEKLAR-EILSDPIRVTV--GEVGMANEDITQVVNVIPSDAEKLPWL 463
Query: 341 YSFLKRNLSK-KVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRTTTFFDFC 396
L + + V+VF S +V E+ + ++ F + HG + Q R T F
Sbjct: 464 LEKLPGMIDEGDVLVFASKKATV---DEIEAQLTLNSFKVAALHGDKDQASRMETLQKFK 520
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+L+ TDVAARGLDI ++ +V YD + ++HR+GRT R G A +
Sbjct: 521 SGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQ 580
Query: 457 EELQF 461
E +F
Sbjct: 581 REARF 585
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 494 (179.0 bits), Expect = 2.7e-46, P = 2.7e-46
Identities = 126/376 (33%), Positives = 209/376 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF+ L H ++ GF T IQ++ P + G+D++G A+TGSGKTLA+++PA+
Sbjct: 238 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297
Query: 163 LLYNAQFAPRN-GTGVIVICPTRELAIQTHAVAKD---LLKYHSQTVGLVIGGSARRGEA 218
+ N R G +V+ PTRELA Q +V +D L K + + GGS++ +A
Sbjct: 298 HIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHT-CIFGGSSKVPQA 356
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
+ +GV +++ATPGRL+D L+N + + LV+DEADR+L+ FE ++R+I++ +
Sbjct: 357 RDLDRGVEVIIATPGRLIDFLENRNTNLQR-CTYLVLDEADRMLDMGFEPQIRKIIEQI- 414
Query: 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQ--GYCV-VPSA 334
+ DRQ ++SAT K+V+ LA F YI ++ G ++ N ++Q C +
Sbjct: 415 RPDRQVVMWSATWPKEVQALAG-DFLND--YIQINIGSMNLSANHNIRQIVEICTEIEKP 471
Query: 335 KRFILLY---SFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRT 389
+R + L S +K N K++VF + V+ +++R + IHG + Q +R
Sbjct: 472 QRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERD 531
Query: 390 TTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGN 449
+ DF + IL+ TDVA+RGLD+ + +++ YD P+ + Y+HR+GRT R + G
Sbjct: 532 SVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQL-GT 590
Query: 450 ALLFLIPEELQFLRYL 465
A F P+ + R L
Sbjct: 591 AYTFFTPDNAKQAREL 606
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 496 (179.7 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 133/390 (34%), Positives = 220/390 (56%)
Query: 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNA 167
GL+ ++ + ++ IQ +A+P +M G+D +G A+TGSGKTL F++P + + +
Sbjct: 535 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD- 593
Query: 168 QFAPRNGTGVI--VICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEAERI 221
Q G G I V+ PTREL Q H+ D+ K+ S+ +G+ V GGS + +
Sbjct: 594 QPPVEAGDGPIGLVMAPTRELVQQIHS---DIRKF-SKPLGIRCVPVYGGSGVAQQISEL 649
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFI--YKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+G ++V TPGR++D L + G I + + LV+DEADR+ + FE ++ +I++ + +
Sbjct: 650 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI-R 708
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339
+RQT LFSAT ++VE LAR PV I V GR+ V N+ + Q V P + RF+
Sbjct: 709 PERQTVLFSATFPRQVETLAR-KVLNKPVEIQVG-GRS-VVNKDITQLVEVRPESDRFLR 765
Query: 340 LYSFLKRNLSK-KVMVFFSS---CNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395
L L K K++VF S C+++ + ++++ C +HG + Q R +T DF
Sbjct: 766 LLELLGEWSEKGKILVFVQSQEKCDAL--YRDMIKS-SYPCLSLHGGKDQTDRESTISDF 822
Query: 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455
+L+ T VAARGLD+ ++ +V +D P+ ++Y+HRVGRT R G +G A+ F+
Sbjct: 823 KNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRA-GRKGCAVTFIS 881
Query: 456 PEELQFLRYL-KAAKVPVKEYEFDQKKLAN 484
++ ++ L KA ++ + D K LA+
Sbjct: 882 EDDAKYAPDLVKALELSEQPVPDDLKALAD 911
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 496 (179.7 bits), Expect = 3.4e-46, P = 3.4e-46
Identities = 121/361 (33%), Positives = 199/361 (55%)
Query: 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYN 166
G+S+ ++ +GF+ T IQ +A+P +M G+D++G A+TGSGKTLAF++P +L
Sbjct: 516 GVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQ 575
Query: 167 AQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEAERIV 222
+G I++ PTREL +Q + KD+ K+ S+++GL V GG+ + +
Sbjct: 576 PSMEDGDGAIAIIMAPTRELCMQ---IGKDIRKF-SKSLGLRPVCVYGGTGISEQIAELK 631
Query: 223 KGVNLLVATPGRLLDHLQNTKGFI--YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+G ++V TPGR++D L G + + + +V+DEADR+ + FE ++ +I+ + +
Sbjct: 632 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNV-RP 690
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340
DRQT +FSAT +++E LAR + P+ + V GR+ V E Q + AK F LL
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKK-PIEVIVG-GRSVVCKEVEQHVVILNDDAKFFKLL 748
Query: 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
+ ++VF + L C +HG Q R +T DF +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
+L+ T VAARGLD+ + +V YD P+ ++Y+HR GRT R G +G+A F+ PE+ +
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRA-GKKGSAYTFITPEQSR 867
Query: 461 F 461
+
Sbjct: 868 Y 868
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 125/361 (34%), Positives = 189/361 (52%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
M+ SF +L L ++ MGF MT IQA+++P ++ G+DV+G +TGSGKT AF +
Sbjct: 1 MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL 60
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGE 217
+ L +F + +V+CPTRELA Q + L + H+ V + GG +
Sbjct: 61 GVLSNLNVKRFRVQ----ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ G ++LV TPGR+LDHL + L LV+DEADR+LE F+E + I+
Sbjct: 117 IGSLEHGAHILVGTPGRILDHLSKDR-IDLSELNTLVLDEADRMLEMGFQEALEAIIAAA 175
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P +RQT LFSAT +E +A+ S + I V+ T T+ Q Y V SA R
Sbjct: 176 PA-ERQTLLFSATYPASIEQIAQ-SVTRNALMIKVE--ATHDTSSIRQYFYKVEGSAARD 231
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L + L + +VF ++ V+ ++ L ++HG +Q++R F
Sbjct: 232 EALETLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFAN 291
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
IL+ TDVAARGLD+ +D + YD +P+ ++HR+GRT R G++G A F
Sbjct: 292 KSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRA-GSKGLAFSFFSDN 350
Query: 458 E 458
E
Sbjct: 351 E 351
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 121/370 (32%), Positives = 200/370 (54%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F +GLS + +G + T +Q +P ++ G+D LG A+TGSGKT AF++P ++
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + G +V+ PTRELA Q + L K +++GG +A + +
Sbjct: 64 LSEDPY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPKK 280
++++ATPGRL DHL+++ F K ++ LV+DEADR+LE +F ++ I+ +P +
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPAR 179
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR--FI 338
RQT LFSAT T +++L L+ P + + T T E L Q Y +VP + ++
Sbjct: 180 -RQTLLFSATLTDTLKELQGLA-TNEPFFWEAQ--ATVRTVEQLDQRYLLVPEKVKDAYL 235
Query: 339 --LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
L+ +F + +++F ++C + + +LR +H KQ++R F
Sbjct: 236 VHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFK 295
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ IL+ TDVA+RGLDIP V ++ ++ P PK YIHRVGRTAR G +G A+ +
Sbjct: 296 SSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRQGQAITLVTQ 354
Query: 457 EELQFLRYLK 466
++ L ++
Sbjct: 355 YDIHLLHAIE 364
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 120/364 (32%), Positives = 207/364 (56%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+FD G + ++ GF T IQ + P + G+D++G A TGSGKTL++ +P +
Sbjct: 113 TTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI 172
Query: 162 ELLYNAQ--FAPRNGTGVIVICPTRELAIQTHAVAKDLLKY-HSQTVG--LVIGGSARRG 216
+ NAQ AP +G V+V+ PTRELA+Q + + K+ HS + V GG +
Sbjct: 173 VHI-NAQPLLAPGDGPIVLVLAPTRELAVQ---IQTECSKFGHSSRIRNTCVYGGVPKSQ 228
Query: 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276
+ + +G +++ATPGRL+D L+ K + K + LV+DEADR+L+ FE ++R+I+
Sbjct: 229 QIRDLSRGSEIVIATPGRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQIRKIVDQ 287
Query: 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQGYCVVPSAK 335
+ + DRQT ++SAT K+V+ LA + P+ + V G +++ + + Q VV +
Sbjct: 288 I-RPDRQTLMWSATWPKEVKQLAA-DYLNDPIQVQV--GSLELSASHNITQIVEVVSDFE 343
Query: 336 RFILLYSFLK---RNLSKKVMVFFSSCNSVKFHSELLRYIQVD---CFDIHGKQKQQKRT 389
+ L +L+ ++ K ++F S+ + ++ +Y++ D IHG + Q++R
Sbjct: 344 KRDRLNKYLETASQDNEYKTLIFAST---KRMCDDITKYLREDGWPALAIHGDKDQRERD 400
Query: 390 TTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGN 449
+F I++ TDVAARG+D+ +++++ YD P ++Y+HR+GRT R GA G
Sbjct: 401 WVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRA-GATGT 459
Query: 450 ALLF 453
A+ F
Sbjct: 460 AISF 463
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 120/354 (33%), Positives = 188/354 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF++ G R + GF T IQA++ P M G+D++ A+TGSGKTL +LIP
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L + R G ++V+ PTRELA Q A + + + GG+ + + +
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+G +++VATPGRL D L+ + + + LV+DEADR+L+ FE ++R+I+K +P K R
Sbjct: 279 RGADIVVATPGRLNDILEMRR-ISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK-R 336
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFILLY 341
QT +++AT K V +A P +++ + V N+ + Q VV P K+ L
Sbjct: 337 QTLMYTATWPKGVRKIAA-DLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQ 395
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ KV++F C++ + +L R + Q IHG + Q +R F
Sbjct: 396 ILRSQEPGSKVIIF---CSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGR 452
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
+L+ TDVAARGLD+ + +V YD P+ ++Y+HR+GRT R GA G A F
Sbjct: 453 TPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA-GATGQAFTF 505
>TAIR|locus:2032338 [details] [associations]
symbol:AT1G71280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0008266
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC016162
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
IPI:IPI00539204 PIR:E96737 RefSeq:NP_177284.1 UniGene:At.70351
ProteinModelPortal:Q9FVV4 SMR:Q9FVV4 PRIDE:Q9FVV4
EnsemblPlants:AT1G71280.1 GeneID:843469 KEGG:ath:AT1G71280
GeneFarm:1442 TAIR:At1g71280 InParanoid:Q9FVV4 OMA:NDASIVC
PhylomeDB:Q9FVV4 ArrayExpress:Q9FVV4 Genevestigator:Q9FVV4
Uniprot:Q9FVV4
Length = 465
Score = 331 (121.6 bits), Expect = 5.5e-46, Sum P(3) = 5.5e-46
Identities = 81/218 (37%), Positives = 125/218 (57%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ 168
LS+ A+ GF+ T +QA +P L KDV+ A TGSGKTLAFL+P +E++ +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 169 FAPRNGTGV--IVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV---K 223
P V ++I PTREL+ Q H VA+ V L R EA+ +
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIHKVAR--------AVRLDFA-KCREVEADMNTLEEE 134
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
G NLL+ TPGRL D ++ + ++NL+ L++DEADR+L+ F++++ I+ LPK+ R+
Sbjct: 135 GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQ-RR 193
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTN 321
T LFSATQT+ V DLA+ + + + D +++ +
Sbjct: 194 TGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVH 231
Score = 170 (64.9 bits), Expect = 5.5e-46, Sum P(3) = 5.5e-46
Identities = 39/103 (37%), Positives = 56/103 (54%)
Query: 323 GLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI----QVDCFD 378
GL+ Y + ++ L L N +KK++VFF +C V + ++ I + F
Sbjct: 212 GLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFP 271
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWI 421
HGK Q+ R T F +A G+LLCTDVAARGLDIP + +I
Sbjct: 272 THGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
Score = 52 (23.4 bits), Expect = 5.5e-46, Sum P(3) = 5.5e-46
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 499 LNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVN 546
L K K A+ S++ AY H IF+ L++ +A + S P ++
Sbjct: 325 LEKGLK-AFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYIS 371
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 438 (159.2 bits), Expect = 7.2e-46, Sum P(3) = 7.2e-46
Identities = 124/374 (33%), Positives = 197/374 (52%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+ L L Q +++ G + IQ + P + G+D++ A+TG+GKTLAF IP ++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 163 LL------YNAQFAPRNGT--GVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214
L Y A F R+G +V+ PTRELA Q K+ Y S TV V GG +
Sbjct: 163 RLTEEAGDYTA-FR-RSGRLPKFLVLAPTRELAKQVEKEIKESAPYLS-TV-CVYGGVSY 218
Query: 215 RGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIM 274
+ + +GV+++V TPGR++D ++ + ++ LV+DEAD++L FEE + I+
Sbjct: 219 TIQQSALTRGVDVVVGTPGRIIDLIEG-RSLKLGEVEYLVLDEADQMLAVGFEEAVESIL 277
Query: 275 KLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQ-QGYCVVPS 333
+ LP K RQ+ LFSAT V+ LAR + P+ ID+ + + EG++ +
Sbjct: 278 ENLPTK-RQSMLFSATMPTWVKKLAR-KYLDNPLNIDLVGDQDEKLAEGIKLYAIATTST 335
Query: 334 AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHS-ELLRYIQVDCFDIHGKQKQQKRTTTF 392
+KR IL K +VF + S L I + +HG Q +R T
Sbjct: 336 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEA--LHGDISQHQRERTL 393
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL 452
F + + +L+ TDVA+RGLDIP VD ++ Y+ P++P+ ++HR GRT R G G+A+L
Sbjct: 394 NAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRA-GKEGSAIL 452
Query: 453 FLIPEELQFLRYLK 466
+ + +R L+
Sbjct: 453 MHTSSQKRTVRSLE 466
Score = 47 (21.6 bits), Expect = 7.2e-46, Sum P(3) = 7.2e-46
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 509 SYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASK 555
S IL + S + + ++ R D V F F SPP V ++SSA +
Sbjct: 449 SAILMHTSSQKRTVRSLER-D---VGCHFEFISPPTVGDLLESSADQ 491
Score = 43 (20.2 bits), Expect = 7.2e-46, Sum P(3) = 7.2e-46
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 98 IMSTTSFDSLGLSQH 112
++S +F SLGLS H
Sbjct: 68 VLSEEAFKSLGLSDH 82
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 125/366 (34%), Positives = 202/366 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF+ LGLS RAI++ G+ T +Q +A+P ++ +DV+ A+TG+GKT F +P ++
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 163 LLYNAQFAP--RNGTGVI---VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217
L+ ++ P R+ VI ++ PTRELA+Q + KY +V GG + + +
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ +GV++LVATPGRLLD L N ++ V+DEADR+L+ F ++R+I+KLL
Sbjct: 130 INHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P+ RQ LFSAT +K++++L + P I+V T + V KR
Sbjct: 189 PES-RQNLLFSATFSKEIKELTDKLLHS-PALIEVARRNTAAARI-THVVHPVDRQRKRE 245
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
+L + +N ++V+VF + + S+ L + IHG + Q R F +
Sbjct: 246 LLSFMIGSKNW-RQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ +L+ TDVAARGLDI + ++ ++ PD K+Y+HRVGRT R G A+ + +
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASND-GVAISLVSGD 363
Query: 458 ELQFLR 463
E++ LR
Sbjct: 364 EVRLLR 369
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 125/366 (34%), Positives = 202/366 (55%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF+ LGLS RAI++ G+ T +Q +A+P ++ +DV+ A+TG+GKT F +P ++
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 163 LLYNAQFAP--RNGTGVI---VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217
L+ ++ P R+ VI ++ PTRELA+Q + KY +V GG + + +
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ +GV++LVATPGRLLD L N ++ V+DEADR+L+ F ++R+I+KLL
Sbjct: 130 INHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P+ RQ LFSAT +K++++L + P I+V T + V KR
Sbjct: 189 PES-RQNLLFSATFSKEIKELTDKLLHS-PALIEVARRNTAAARI-THVVHPVDRQRKRE 245
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
+L + +N ++V+VF + + S+ L + IHG + Q R F +
Sbjct: 246 LLSFMIGSKNW-RQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ +L+ TDVAARGLDI + ++ ++ PD K+Y+HRVGRT R G A+ + +
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASND-GVAISLVSGD 363
Query: 458 ELQFLR 463
E++ LR
Sbjct: 364 EVRLLR 369
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 125/372 (33%), Positives = 200/372 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T+F Q+ + F+ T IQA+ P + G+D++G A+TGSGKTLA+L+PA+
Sbjct: 95 TNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 154
Query: 162 ELLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ + + R +G +V+ PTRELA Q VA D K V GG+ + +
Sbjct: 155 VHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRD 214
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ +GV + +ATPGRL+D L+ K + + LV+DEADR+L+ FE ++R+I+ + +
Sbjct: 215 LERGVEICIATPGRLIDFLEVGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RP 272
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-NEGLQQ--GYCVVPSA-KR 336
DRQT ++SAT K+V LA Q Y+ ++ G +++ N + Q C+ +
Sbjct: 273 DRQTLMWSATWPKEVRQLAEDFLQD---YVQINIGALELSANHNILQIVDVCMENEKDNK 329
Query: 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD---IHGKQKQQKRTTTFF 393
I L + K ++F + K EL R ++ D + IHG + Q +R
Sbjct: 330 LIQLMEEIMAEKENKTIIFVET---KKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLT 386
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
+F + IL+ TDVA+RGLD+ V +++ YD P+ ++Y+HR+GRTAR +G A F
Sbjct: 387 EFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN-KGTAYTF 445
Query: 454 LIPEELQFLRYL 465
P L+ R L
Sbjct: 446 FTPGNLRQARDL 457
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 491 (177.9 bits), Expect = 8.7e-46, P = 8.7e-46
Identities = 120/362 (33%), Positives = 196/362 (54%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+S GL R + GF T IQA+ P + +D++ A+TGSGKTL +LIPA
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
LL + + RNG V+++ PTRELA Q A + + + GG+ + + + +
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
+G +++VATPGRL D L+ K ++ + LV+DEADR+L+ FE ++R+I+ +P + R
Sbjct: 556 RGADIVVATPGRLNDILE-MKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPR-R 613
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
QT +++AT K+V +A PV +++ N+ + Q VVP ++ L
Sbjct: 614 QTLMYTATWPKEVRKIAS-DLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQ 672
Query: 343 FLK-RNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L+ + KV++F C++ + L R + IHG + Q +R F +
Sbjct: 673 ILRSQERGSKVIIF---CSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGK 729
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDVAARGLDI + ++ YD P ++Y+HR+GRT R GA G A F ++
Sbjct: 730 SCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA-GATGVAFTFFTEQDW 788
Query: 460 QF 461
++
Sbjct: 789 KY 790
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 482 (174.7 bits), Expect = 9.1e-46, P = 9.1e-46
Identities = 125/364 (34%), Positives = 193/364 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP M G+D++G A+TGSGKT AF+ P
Sbjct: 248 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 307
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q H+ K K Y+ ++V V GG + +A+
Sbjct: 308 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVA-VYGGGSMWEQAK 366
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 367 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV-R 424
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS--AKRF 337
DRQT LFSAT KK+E LAR P I V G NE + Q + PS +K
Sbjct: 425 PDRQTLLFSATFRKKIEKLAR-DILIDP--IRVVQGDIGEANEDVTQIVEIFPSGPSKWN 481
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L ++ S V++F + + + + L+ + +HG Q +R +F K
Sbjct: 482 WLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKK 541
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
IL+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A L P+
Sbjct: 542 KGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTLLTPK 600
Query: 458 ELQF 461
+ F
Sbjct: 601 DSNF 604
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 121/370 (32%), Positives = 199/370 (53%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F L LS + +G + T +Q +P ++ G+D LG A+TGSGKT AF++P ++
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
L + G +V+ PTRELA Q + L K +++GG +A + +
Sbjct: 64 LSEDPY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSR 119
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPKK 280
++++ATPGRL DHL+++ F K ++ LV+DEADR+LE +F ++ I+ +P +
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPAR 179
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR--FI 338
RQT LFSAT T +++L L+ P + + T T E L Q Y +VP + ++
Sbjct: 180 -RQTLLFSATLTDTLKELQGLA-TNQPFFWEAQ--ATVRTVEQLDQRYLLVPEKVKDAYL 235
Query: 339 --LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
L+ +F + +++F ++C + + +LR +H KQ++R F
Sbjct: 236 VHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFK 295
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
+ IL+ TDVA+RGLDIP V ++ ++ P PK YIHRVGRTAR G +G A+ +
Sbjct: 296 SSTYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARA-GRQGQAITLVTQ 354
Query: 457 EELQFLRYLK 466
++ L ++
Sbjct: 355 YDIHLLHAIE 364
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 146/388 (37%), Positives = 200/388 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SFD L L I F T IQA A P L+ GKDV+G A TGSGKT AF +PA+
Sbjct: 115 SFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL----VIGGSARRGEA 218
L N Q + G V+VI PTRELA Q + D L + VG+ V GG + +
Sbjct: 173 HLMNDQ--KKRGIQVLVISPTRELASQIY----DNLIVLTDKVGMQCCCVYGGVPK--DE 224
Query: 219 ERI-VKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKL 276
+RI +K ++VATPGRLLD LQ +G + + LV+DEADR+LE FEE+++ I++
Sbjct: 225 QRIQLKKSQVVVATPGRLLDLLQ--EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRE 282
Query: 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAK 335
RQT +F+AT K+V +LA +F P+ + + + N+ + Q VV P K
Sbjct: 283 TDASKRQTLMFTATWPKEVRELAS-TFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGK 341
Query: 336 RFILLYSFLKRNLS-----KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTT 390
LL LK+ S +KV++F L+Y + IHG QQ+RT
Sbjct: 342 ERKLL-ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQ 400
Query: 391 TFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNA 450
+F + +LL TDVAARGLDIP V ++ P ++Y+HR+GRT R G G A
Sbjct: 401 ALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRA-GQTGTA 459
Query: 451 LLFLIPEELQF----LRYLKAAKVPVKE 474
+E + L A PV E
Sbjct: 460 HTLFTEQEKHLAGGLVNVLNGANQPVPE 487
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 123/364 (33%), Positives = 198/364 (54%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F+ L + R I + GF+ + IQ ++P + G D+L A+ G+GKT AF IP +E
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE- 214
Query: 164 LYNAQFAPRNGT-GVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+ P N +++ PTRELA+QT V K+L KY V + GG++ R + R+
Sbjct: 215 ----KIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLY 270
Query: 223 KGVNLLVATPGRLLDHLQNTKGF-IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+ V+LLV TPGR+LD + KG + K+ LV+DEAD++L F+ + ++++ LP+
Sbjct: 271 QPVHLLVGTPGRILDLAK--KGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPES- 327
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
RQ +FSAT V+ + + P I++ D ++T G+ Q Y V ++ L
Sbjct: 328 RQILMFSATFPVTVKSF-KDRYLKKPYIINLMD---QLTLMGVTQYYAFVEERQKVHCLN 383
Query: 342 S-FLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
+ F K +++ + +F +S N V+ ++ + + CF IH K Q R F DF
Sbjct: 384 TLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGAC 442
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
L+CTD+ RG+DI AV+ ++ +D P + Y+HRVGR+ R G G A+ L+ E +
Sbjct: 443 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF-GHLGLAVN-LVTYEDR 500
Query: 461 FLRY 464
F Y
Sbjct: 501 FKMY 504
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 293 (108.2 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 71/184 (38%), Positives = 110/184 (59%)
Query: 104 FDSLGLSQHTFRAI-QDMGFQFMTQIQARAVPPLM--VGK-DVLGAARTGSGKTLAFLIP 159
F SLG+S + Q M + T IQ +A+P ++ GK D A+TGSGKTL++L+P
Sbjct: 145 FASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP 204
Query: 160 AVELLYNAQ-FAPR-NGTGVIVICPTRELAIQTHAVAKDLLKY-HSQTVGLVIGGSARRG 216
+ + N R +G +VI PTRELA Q + V L+ H L+IGG ++
Sbjct: 205 IISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKS 264
Query: 217 EAERIVKGVNLLVATPGRLLDHLQNTKGF---IYKNLKCLVIDEADRILEANFEEEMRQI 273
E R+ KG N ++ TPGR+LDHLQNTK + ++L+ +V+DE D+++E F+E + +I
Sbjct: 265 EKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEI 324
Query: 274 MKLL 277
+K++
Sbjct: 325 IKIV 328
Score = 210 (79.0 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 44/97 (45%), Positives = 66/97 (68%)
Query: 377 FDIHGKQKQQKRTTTFFDFCK---AEKG---ILLCTDVAARGLDIPAVDWIVQYDPPDEP 430
+ +HG QQ RT+T F + A KG I+ CTDVA+RGLD+P V +++ DPP
Sbjct: 485 YKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAV 544
Query: 431 KEYIHRVGRTARGEGARGNALLFLIP-EELQFLRYLK 466
++++HRVGRTAR G +G +LLFL+P EE +++ Y++
Sbjct: 545 EDHLHRVGRTARA-GEKGESLLFLLPGEEEKYMDYIQ 580
Score = 83 (34.3 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 30/98 (30%), Positives = 44/98 (44%)
Query: 473 KEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH--SMKDIFNVHRLDL 530
KEYE+D + ++V ++ + N + K + S++ AY +H K FNV L L
Sbjct: 628 KEYEWDTNATTWHLNIERRVVGDSAFKNLAVK-GFISHVRAYATHISQEKKFFNVKFLHL 686
Query: 531 QAVAASFCFSSPPKVNLTIDSSASKFRKKTRKVEGSRN 568
+A SF PK S KK K E S+N
Sbjct: 687 GHLAKSFGLRERPKAMGLQSSKDGNSEKKPTK-ENSKN 723
Score = 43 (20.2 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 25/95 (26%), Positives = 40/95 (42%)
Query: 286 LFSATQTKKVEDLARLSFQTTPVYID---VDDGRTKVTNEGLQQGYCVVPSAKRFILLYS 342
L SAT T V L ++ + + + D V + L Q +VP R + L +
Sbjct: 349 LCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAA 408
Query: 343 FLKRNLSK------------KVMVFFSSCNSVKFH 365
L N++K + +VF S +SV+FH
Sbjct: 409 TLN-NITKDFIASGQQSKTLRTIVFVSCSDSVEFH 442
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 486 (176.1 bits), Expect = 2.0e-45, P = 2.0e-45
Identities = 123/363 (33%), Positives = 194/363 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP + G+D++G A+TGSGKT AF+ P
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q HA K K Y+ ++V V GG + +A+
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA-VYGGGSMWEQAK 371
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 372 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-R 429
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI- 338
DRQT LFSAT KK+E LAR P I V G NE + Q ++ S ++
Sbjct: 430 PDRQTLLFSATFRKKIEKLAR-DILIDP--IRVVQGDIGEANEDVTQIVEILHSGSKWNW 486
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
L ++ S V++F + + + + L+ + +HG Q +R DF K
Sbjct: 487 LTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 546
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+ +L+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A L P++
Sbjct: 547 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTLLTPKD 605
Query: 459 LQF 461
F
Sbjct: 606 SNF 608
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 125/389 (32%), Positives = 199/389 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F Q+ + D F T IQ + P + G+D++G A+TGSGKTLA+L+PA+
Sbjct: 93 AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 152
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + + R +G +V+ PTRELA Q VA D K + GG+ + + +
Sbjct: 153 HINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDL 212
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L++ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 213 ERGVEICIATPGRLIDFLESGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 270
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT ++SAT K+V LA F I+V + + LQ + S K + I
Sbjct: 271 RQTLMWSATWPKEVRQLAE-DFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 329
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + K ++F + + +R IHG + Q +R +F +
Sbjct: 330 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVA+RGLD+ V +++ YD P+ ++Y+HR+GRTAR +G A F P L
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGNL 448
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSH 488
+ R L KV + + KL + H
Sbjct: 449 KQAREL--IKVLEEANQAINPKLMQLVDH 475
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 125/389 (32%), Positives = 199/389 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F Q+ + D F T IQ + P + G+D++G A+TGSGKTLA+L+PA+
Sbjct: 93 AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 152
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + + R +G +V+ PTRELA Q VA D K + GG+ + + +
Sbjct: 153 HINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDL 212
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L++ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 213 ERGVEICIATPGRLIDFLESGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 270
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT ++SAT K+V LA F I+V + + LQ + S K + I
Sbjct: 271 RQTLMWSATWPKEVRQLAE-DFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 329
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + K ++F + + +R IHG + Q +R +F +
Sbjct: 330 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVA+RGLD+ V +++ YD P+ ++Y+HR+GRTAR +G A F P L
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGNL 448
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSH 488
+ R L KV + + KL + H
Sbjct: 449 KQAREL--IKVLEEANQAINPKLMQLVDH 475
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 125/389 (32%), Positives = 199/389 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F Q+ + D F T IQ + P + G+D++G A+TGSGKTLA+L+PA+
Sbjct: 93 AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 152
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + + R +G +V+ PTRELA Q VA D K + GG+ + + +
Sbjct: 153 HINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDL 212
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L++ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 213 ERGVEICIATPGRLIDFLESGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 270
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT ++SAT K+V LA F I+V + + LQ + S K + I
Sbjct: 271 RQTLMWSATWPKEVRQLAE-DFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 329
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + K ++F + + +R IHG + Q +R +F +
Sbjct: 330 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVA+RGLD+ V +++ YD P+ ++Y+HR+GRTAR +G A F P L
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGNL 448
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSH 488
+ R L KV + + KL + H
Sbjct: 449 KQAREL--IKVLEEANQAINPKLMQLVDH 475
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 323 (118.8 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
Identities = 74/178 (41%), Positives = 109/178 (61%)
Query: 102 TSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLM-VGKDVLGAARTGSGKTLAFLIP 159
T+F LGL++ + D + F T+IQ +P L+ D+ A+TGSGKTLAF++P
Sbjct: 135 TNFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLP 194
Query: 160 AV-ELLYNAQFAPRNGTGV--IVICPTRELAIQTHAVAKDLLKYHSQTV-GLVIGGSARR 215
+L+ +F +G+ I++ PTRELA Q + V + L + H V G+VIGG ++
Sbjct: 195 IFHKLMRENKFKINRESGLFAIILTPTRELATQIYGVLETLTRCHHWIVPGIVIGGEKKK 254
Query: 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273
E R+ KG N+LVATPGRL DHL+NTK L+ LV+DE D+++E FE+ + QI
Sbjct: 255 SEKARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQI 312
Score = 196 (74.1 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
Identities = 74/232 (31%), Positives = 113/232 (48%)
Query: 377 FDIHGKQKQQKRTTTFFDFCKAEKG---ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEY 433
+ +HG QQ R +T F K IL CTDVA+RGLD+P V +++YDPP ++
Sbjct: 485 YKLHGSLSQQTRASTLQSFVKDNNSYNKILFCTDVASRGLDLPNVANVIEYDPPFTIDDH 544
Query: 434 IHRVGRTARGEGARGNALLFLIP--EELQFLRYLKAA-----KVPVKEYE-FDQKKLA-- 483
+HR+GR+AR G GNA LFL+P EE L+ A + VK YE Q+ A
Sbjct: 545 LHRIGRSAR-LGNEGNATLFLLPGIEEGYVDGKLRVAHPREGNLRVKNYEKILQEGFAQG 603
Query: 484 NVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMK-DIFNVH-RLDLQAVAASFCFSS 541
N++S KL + + D R + SH F H R +++ F +
Sbjct: 604 NIKSKDNKLGKWDIHATTWHLDVERWLLEDQASHDEAVRAFTSHIRAYATHLSSEREFFN 663
Query: 542 PPKVNLTIDSSASKFR---KKTRKVEGSRNGFSESNPYGRQRDEDDKRQFVR 590
++L + + R KK K G+ + +SES G++ ED +++ +R
Sbjct: 664 VKLLHLGHLAKSFGLRETPKKLGKSVGNNSNYSESKK-GKK--EDPRKKMLR 712
Score = 65 (27.9 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 317 TKVTNEGLQQGYCVVPSAKRFILLYSFL---KRNLSKKVMVFFSSCNSVKFHSEL 368
T + L Q VVP R + L + L ++ +++ +VFFS +SV FH ++
Sbjct: 384 TSTAPDQLIQNVVVVPPKLRLVTLDALLLKISKHSAERTIVFFSCSDSVDFHFDV 438
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 127/387 (32%), Positives = 207/387 (53%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
M+ T+F L L + A+QD GF T IQA A+PP + G+DVLG+A TG+GKT A+L+
Sbjct: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60
Query: 159 PAVELLYNAQFAPRNGTG---VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215
PA++ L + F PR +G ++++ PTRELA+Q A++L K+ + + GG A
Sbjct: 61 PALQHLLD--F-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117
Query: 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMK 275
AE + +++VAT GRLL +++ + F + ++ L++DEADR+L+ F +++ I
Sbjct: 118 NHAEVFSENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176
Query: 276 LLPKKDRQTALFSAT-QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA 334
+ +QT LFSAT + ++D A + PV + + T+ + Q Y
Sbjct: 177 ETRWR-KQTLLFSATLEGDAIQDFAERLLED-PVEVSANPS-TRERKKIHQWYYRADDLE 233
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVD-CFDIHGKQKQQKRTTTFF 393
+ LL LK+ + + +VF V + LR ++ C+ + G+ Q KR
Sbjct: 234 HKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCY-LEGEMVQGKRNEAIK 292
Query: 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL-L 452
+ +L+ TDVAARG+DIP V + +D P Y+HR+GRTAR G +G A+ L
Sbjct: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA-GRKGTAISL 351
Query: 453 FLIPEELQFLRYLKAAKVPVKEYEFDQ 479
+ L + + + P+K D+
Sbjct: 352 VEAHDHLLLGKVGRYIEEPIKARVIDE 378
>POMBASE|SPBC691.04 [details] [associations]
symbol:SPBC691.04 "mitochondrial ATP-dependent RNA
helicase Mss116 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005759 "mitochondrial matrix" evidence=ISS]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC691.04 GO:GO:0005524
GO:GO:0006417 GO:GO:0008380 GO:GO:0005759 EMBL:CU329671
GO:GO:0006397 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0032543
EMBL:AB004535 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_595596.1 ProteinModelPortal:O13622 STRING:O13622
EnsemblFungi:SPBC691.04.1 GeneID:2541136 KEGG:spo:SPBC691.04
OrthoDB:EOG437VPN NextBio:20802249 Uniprot:O13622
Length = 535
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 138/442 (31%), Positives = 224/442 (50%)
Query: 102 TSFDSLGLSQHTFR-AIQDMGFQFMTQIQARAVPPLMVGKD-VLGAARTGSGKTLAFLIP 159
T F + TF+ ++ GF+ MT +Q R + + ++ + A+TG+GKTLAFL+
Sbjct: 37 TLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLV 96
Query: 160 AVELLYNAQFAPR-NGTGV--IVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216
A + + + PR N + + +++ PTRELA+Q A+ L V IGG+++
Sbjct: 97 AFKDVLKGK--PRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMR 154
Query: 217 EAERIVKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMK 275
E I +G NLL+ATPGRL DHLQN + + ++DEADR+++ F E + I +
Sbjct: 155 EENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHE 214
Query: 276 LLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335
+ + FSAT KV ++ R T I+ D T+E + Q K
Sbjct: 215 AVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDK 274
Query: 336 RFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLR-YIQVDCFDIH-GKQKQQKRT 389
F S L++ N S +++VF + + V F +L ++++ CF +H G Q+R+
Sbjct: 275 VFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRS 334
Query: 390 TTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGN 449
T F K + GIL TDV ARG+D P + +VQ P +YIHR+GRT R G G
Sbjct: 335 ITE-SFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRA-GKTGE 392
Query: 450 ALLFLIPEELQFLRYLKAAKVPVKEYEFD---QKKLANVQSHLEKLVANNYYLNKSAKDA 506
A L L+ +E FL +K +P+K + + L+ ++S +EK ++ + + K
Sbjct: 393 AYLILLEQEKPFLNSIK--HLPLKRATIEPLSDQALSTLRSDIEK--SSKFSRTNALKTL 448
Query: 507 YRS--YILAYNSHSMKDIFNVH 526
Y S ++ + +S N+H
Sbjct: 449 YGSKPHVFSGSSQRRATGKNIH 470
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 484 (175.4 bits), Expect = 3.2e-45, P = 3.2e-45
Identities = 124/367 (33%), Positives = 195/367 (53%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA- 160
+SF G + I+ + T IQ + VP + G+D++G A+TGSGKT AF+ P
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAE 219
+ ++ + P +G +++CPTREL Q HA K K Y+ ++V V GG + +A+
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA-VYGGGSMWEQAK 371
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
+ +G ++V TPGRL+DH++ K + + LV DEADR+ + FE ++R I + +
Sbjct: 372 ALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-R 429
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYI---DVDDGRTKVTN--EGLQQGYCVVPSA 334
DRQT LFSAT KK+E LAR P+ + D+ + VT E L G PS
Sbjct: 430 PDRQTLLFSATFRKKIEKLAR-DILIDPIRVVQGDIGEANEDVTQIVEILHSG----PSK 484
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394
+ L ++ S V++F + + + + L+ + +HG Q +R D
Sbjct: 485 WNW-LTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454
F K + +L+ TDVAARGLDIP++ ++ YD + + HR+GRT R G +G A L
Sbjct: 544 FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA-GEKGVAYTLL 602
Query: 455 IPEELQF 461
P++ F
Sbjct: 603 TPKDSNF 609
>UNIPROTKB|Q2KEF1 [details] [associations]
symbol:MGCH7_ch7g1085 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
GO:GO:0008026 ProteinModelPortal:Q2KEF1 Uniprot:Q2KEF1
Length = 568
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 135/415 (32%), Positives = 218/415 (52%)
Query: 118 QDMGFQFMTQIQARAVPPLMVGK-DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTG 176
QD+ F M+ +QA + L+ + DVL A+TG+GKT+AFL+PA++ L + N
Sbjct: 93 QDLKFDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAFLLPALQTLLRRPSSRGNDVS 152
Query: 177 VIVICPTRELAIQTHAVAKDLLKYHSQ-TVGLVIGGSARRGEAERIVKGVNLLVATPGRL 235
V+VI PTRELA+Q A+ LL+ Q V IGG+ + E RI++G +L+ TPGRL
Sbjct: 153 VLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTNKDAEQRRILRGCQILIGTPGRL 212
Query: 236 LDHLQNTK-GFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD---RQTALFSATQ 291
+DHL+ + +++ V+DEADR+L+ F ++++I+ LP + RQ LFSAT
Sbjct: 213 MDHLEEQSVAEMLQSVDTFVLDEADRLLDMGFMPQLKKIVAALPNRQKVPRQGMLFSATV 272
Query: 292 TKKVEDLARLSFQTTPVYID-VDDGRTKVTNEGLQQGYCVVPS-AKRFILLYSFLKRNLS 349
+ V ++ ++ +I + G + T+E + Q VP+ + L L+ L+
Sbjct: 273 AEHVAKVSSIALAPDYKFISTIPKGESN-THERVPQHLIEVPNFSDTMAALVGALRHELA 331
Query: 350 K-------KVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
+ K +VF + V F++ +L + +H + Q KRT D+ K+
Sbjct: 332 ESANQDEFKAIVFAPTAALVDFYAAVLEGLPNMPRILTLHSRMTQSKRTRVTEDYRKSNA 391
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460
+L+ TDV ARG+D P+V + Q P + + YIHR+GRTAR GA G + E
Sbjct: 392 TVLVATDVVARGMDFPSVTNVFQVGLPMDKESYIHRLGRTARA-GAEGRGTFIVSAAESY 450
Query: 461 FLRYLKAAKVPVKEYEF-DQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAY 514
F R KV +K++ F DQ + ++++ L K AY+S++ Y
Sbjct: 451 FPR-----KV-MKDFTFIDQPADLSALGEIKEVAPK---LEPYGK-AYQSWLGFY 495
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 480 (174.0 bits), Expect = 4.0e-45, P = 4.0e-45
Identities = 131/382 (34%), Positives = 203/382 (53%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F + +S+ T + ++ G F+ IQA+ + GKD++ ARTG+GKT +F IP VE
Sbjct: 188 AFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVE 247
Query: 163 -LLYNAQFAPRN-GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
LL Q R V+V+ PTRELA Q D+ K V GG+ G+ ER
Sbjct: 248 KLLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITK--KLAVACFYGGTPYGGQIER 305
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G+++LV TPGR+ DHLQN K + K LK +V+DE D++L+ F +++ +I+ + KK
Sbjct: 306 MKNGIDILVGTPGRIKDHLQNGKLDLTK-LKHVVLDEVDQMLDMGFADQVEEILCVAYKK 364
Query: 281 DR----QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336
D QT LFSAT V ++A+ ++T +D+ +T+ T ++ +R
Sbjct: 365 DSEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQR 424
Query: 337 FILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQV--DCFDIHGKQKQQKRTTTF 392
++ ++ + ++F C + K EL + + V D +HG Q++R T
Sbjct: 425 AAVIGDVIRVYSGFQGRTIIF---CETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITL 481
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL 452
F + G+L+ T+VAARGLDIP VD +VQ PP + + YIHR GRT R G G +
Sbjct: 482 KGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRA-GRTGVCIC 540
Query: 453 FLI-PEELQFLRYLKAAKVPVK 473
F EE Q + + A + K
Sbjct: 541 FYQHKEEYQLAQVEQKAGIKFK 562
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 141/406 (34%), Positives = 211/406 (51%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S+ +F SL L Q + + +G++ MT IQA+ +P L+ GKDV+G A+TGSGKT AF +
Sbjct: 8 SSLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLA 67
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY----HSQTVGLVIGGSARR 215
+ L +F ++ +VICPTRELA Q VAK+L K H+ + + GG+
Sbjct: 68 LLNKLEVKKFRIQS----MVICPTRELADQ---VAKELRKLARGIHNIKILTLCGGTPFG 120
Query: 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIY-KNLKCLVIDEADRILEANFEEEMRQIM 274
+ + G +++V TPGRL +H+ KG + NL LV+DEADR+LE F+ + I+
Sbjct: 121 PQIGSLEHGAHVIVGTPGRLEEHV--IKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIV 178
Query: 275 KLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA 334
P DRQT LFSAT +++ ++ S T PV + + + T Q+ + V
Sbjct: 179 GRTPL-DRQTLLFSATFPDQIKSISE-SIMTDPVMVKIASSEDQSTIS--QKFFKVGNDD 234
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRTTT 391
R L L N + +F CN+ K ++ + D F + HG +Q+ R T
Sbjct: 235 DRLDALRLLLLGNQVESTAIF---CNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQT 291
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F IL+ TDVAARGLDI ++D ++ Y + + ++HR+GRT R G+ G A
Sbjct: 292 LLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRA-GSTGIAY 350
Query: 452 -LFLIPEELQ--FLR-YLKAAKVP-------VKEYEFDQKKLANVQ 486
LF E + L YL+A P V E Q K+A +Q
Sbjct: 351 SLFSDKESYKVGLLEDYLEAVITPEPLPSLAVLSNERPQAKMATIQ 396
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 119/370 (32%), Positives = 194/370 (52%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
MS SF + LS+ RA+ +G++ T++Q +P + KD++ ++TGSGKT +F I
Sbjct: 1 MSKKSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGI 60
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
P E++ + P+ +V+ PTRELA+Q ++ ++ + G S +
Sbjct: 61 PLCEMVEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQK 116
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ + +++V TPGR+LDH++ KG + + LK LVIDEAD +L F +++ I+ L
Sbjct: 117 LELKQKTHIVVGTPGRVLDHIE--KGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDEL 174
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P K R T LFSAT + VE L+R ++ P +I++ +T + ++ V ++
Sbjct: 175 PTK-RMTMLFSATLPEDVERLSR-TYMNAPTHIEIK--AAGITTDKIEHTLFEVREEEKL 230
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
LL ++F + +V L + C IHG Q+ R DF K
Sbjct: 231 SLLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRK 290
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ L+ TDVAARG+DI + ++ YD P E + Y+HR GRT R G G A+ F+ P
Sbjct: 291 GKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRA-GNSGKAITFITPY 349
Query: 458 ELQFLRYLKA 467
E +FL ++A
Sbjct: 350 EDRFLEEIEA 359
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 119/370 (32%), Positives = 194/370 (52%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
MS SF + LS+ RA+ +G++ T++Q +P + KD++ ++TGSGKT +F I
Sbjct: 1 MSKKSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGI 60
Query: 159 PAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218
P E++ + P+ +V+ PTRELA+Q ++ ++ + G S +
Sbjct: 61 PLCEMVEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQK 116
Query: 219 ERIVKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLL 277
+ + +++V TPGR+LDH++ KG + + LK LVIDEAD +L F +++ I+ L
Sbjct: 117 LELKQKTHIVVGTPGRVLDHIE--KGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDEL 174
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P K R T LFSAT + VE L+R ++ P +I++ +T + ++ V ++
Sbjct: 175 PTK-RMTMLFSATLPEDVERLSR-TYMNAPTHIEIK--AAGITTDKIEHTLFEVREEEKL 230
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
LL ++F + +V L + C IHG Q+ R DF K
Sbjct: 231 SLLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRK 290
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ L+ TDVAARG+DI + ++ YD P E + Y+HR GRT R G G A+ F+ P
Sbjct: 291 GKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRA-GNSGKAITFITPY 349
Query: 458 ELQFLRYLKA 467
E +FL ++A
Sbjct: 350 EDRFLEEIEA 359
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 141/406 (34%), Positives = 211/406 (51%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
S+ +F SL L Q + + +G++ MT IQA+ +P L+ GKDV+G A+TGSGKT AF +
Sbjct: 8 SSLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLA 67
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY----HSQTVGLVIGGSARR 215
+ L +F ++ +VICPTRELA Q VAK+L K H+ + + GG+
Sbjct: 68 LLNKLEVKKFRIQS----MVICPTRELADQ---VAKELRKLARGIHNIKILTLCGGTPFG 120
Query: 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIY-KNLKCLVIDEADRILEANFEEEMRQIM 274
+ + G +++V TPGRL +H+ KG + NL LV+DEADR+LE F+ + I+
Sbjct: 121 PQIGSLEHGAHVIVGTPGRLEEHV--IKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIV 178
Query: 275 KLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA 334
P DRQT LFSAT +++ ++ S T PV + + + T Q+ + V
Sbjct: 179 GRTPL-DRQTLLFSATFPDQIKSISE-SIMTDPVMVKIASSEDQSTIS--QKFFKVGNDD 234
Query: 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRTTT 391
R L L N + +F CN+ K ++ + D F + HG +Q+ R T
Sbjct: 235 DRLDALRLLLLGNQVESTAIF---CNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQT 291
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451
F IL+ TDVAARGLDI ++D ++ Y + + ++HR+GRT R G+ G A
Sbjct: 292 LLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRA-GSTGIAY 350
Query: 452 -LFLIPEELQ--FLR-YLKAAKVP-------VKEYEFDQKKLANVQ 486
LF E + L YL+A P V E Q K+A +Q
Sbjct: 351 SLFSDKESYKVGLLEDYLEAVITPEPLPSLAVLSNERPQAKMATIQ 396
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 120/378 (31%), Positives = 194/378 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF+S + ++ G+Q T IQA+A+PP++ G DV+G A+TG+GKT A+ +P ++
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
+ + PR +V+ PTRELA Q + L + + GG + R+
Sbjct: 62 KMLST---PRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLR 118
Query: 223 KGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
GV+++VA PGRLLDH+ +G I ++ L+IDEADR+ + F+ +++ I+K L +
Sbjct: 119 SGVDVVVACPGRLLDHIW--RGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQP- 175
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
QT LFSAT +V L L QT PV I + T+ + V + ++ LL
Sbjct: 176 HQTLLFSATMPPEVRKLT-LETQTNPVTIQIG---TQAPASSVSHSVYPVKNHQKTPLLI 231
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
LK +K V++F + + ++ + + G Q +R F +
Sbjct: 232 EILKTTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFK 291
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
IL+ TD+AARGLDI + ++ YD PD P++Y HR+GRT R + G AL + +
Sbjct: 292 ILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRT-GQALSLVTGRDGDM 350
Query: 462 LRYL-KAAKVPVKEYEFD 478
+R + K P++ D
Sbjct: 351 VRDIQKLINSPIQRLRVD 368
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 477 (173.0 bits), Expect = 5.2e-45, P = 5.2e-45
Identities = 125/389 (32%), Positives = 199/389 (51%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F Q+ + D F T IQ + P + G+D++G A+TGSGKTLA+L+PA+
Sbjct: 172 AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 231
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + + R +G +V+ PTRELA Q VA D K + GG+ + + +
Sbjct: 232 HINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDL 291
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L++ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 292 ERGVEICIATPGRLIDFLESGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 349
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFIL 339
RQT ++SAT K+V LA F I+V + + LQ + S K + I
Sbjct: 350 RQTLMWSATWPKEVRQLAE-DFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 408
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + K ++F + + +R IHG + Q +R +F +
Sbjct: 409 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 468
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
IL+ TDVA+RGLD+ V +++ YD P+ ++Y+HR+GRTAR +G A F P L
Sbjct: 469 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGNL 527
Query: 460 QFLRYLKAAKVPVKEYEFDQKKLANVQSH 488
+ R L KV + + KL + H
Sbjct: 528 KQAREL--IKVLEEANQAINPKLMQLVDH 554
WARNING: HSPs involving 652 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 591 516 0.00088 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 902
No. of states in DFA: 608 (65 KB)
Total size of DFA: 268 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.21u 0.16s 43.37t Elapsed: 00:00:02
Total cpu time: 43.27u 0.16s 43.43t Elapsed: 00:00:02
Start: Mon May 20 16:32:52 2013 End: Mon May 20 16:32:54 2013
WARNINGS ISSUED: 2