BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007743
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/211 (61%), Positives = 174/211 (82%), Gaps = 3/211 (1%)
Query: 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
TSF SL ++++T +AI++MGF MT+IQ +++ PL+ G+D+L AA+TGSGKTLAFLIP
Sbjct: 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 111
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219
AVEL+ +F PRNGTGV+++ PTRELA+QT V K+L+ +H T GL++GGS R EA+
Sbjct: 112 AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 171
Query: 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279
++ G+N++VATPGRLLDH+QNT GF+YKNL+CLVIDEADRIL+ FEEE++QI+KLLP
Sbjct: 172 KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 231
Query: 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYI 310
+ RQT LFSATQT+KVEDLAR+S + P+Y+
Sbjct: 232 R-RQTMLFSATQTRKVEDLARISLKKEPLYV 261
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 144/213 (67%), Gaps = 3/213 (1%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
T F LS+ T + +Q+ ++ +T+IQ + + + GKDVLGAA+TGSGKTLAFL+P +
Sbjct: 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 84
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
E LY Q+ +G GV++I PTRELA QT V + + K H + GL+IGG + EAERI
Sbjct: 85 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 144
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+N+LV TPGRLL H+ T F +L+ LV+DEADRIL+ F + M +++ LPKK
Sbjct: 145 -NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK- 202
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314
RQT LFSATQTK V+DLARLS + P Y+ V +
Sbjct: 203 RQTLLFSATQTKSVKDLARLSLK-NPEYVWVHE 234
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 211/392 (53%), Gaps = 40/392 (10%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKD--VLGAARTGSGKTLAFLIPAVELLYN 166
L + +AI M F +T +Q + + P++ +D V+ A+TG+GKT AFLIP + L N
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 167 AQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL-------VIGGSARRGEAE 219
+F + +++ PTR+LA+Q A K K H GL ++GG+ R
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVK---KIHDMNYGLKKYACVSLVGGTDFRAAMN 144
Query: 220 RIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
++ K N+++ATPGRL+D L+ ++ + V+DEADR+LE F +++ I +L
Sbjct: 145 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 204
Query: 279 KKDRQTA------LFSATQTKKVEDLAR-LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
+K+ ++A LFSAT KV+ LA + + +++D D +E + Q VV
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS--VV 262
Query: 332 PSAKRFILLYSFLK--------RNLSKKVMVFFSSCNSVKFHSELLRYIQ------VDCF 377
S K +++ ++ R+ + K ++F +VKF S L ++ +
Sbjct: 263 ISEKFANSIFAAVEHIKKQIKERDSNYKAIIF---APTVKFTSFLCSILKNEFKKDLPIL 319
Query: 378 DIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRV 437
+ HGK Q KRT+ F K E GIL+CTDV ARG+D P V ++Q P E YIHR+
Sbjct: 320 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379
Query: 438 GRTARGEGARGNALLFLIPEELQFLRYLKAAK 469
GRTAR G G+++LF+ +EL F+R L+ AK
Sbjct: 380 GRTARS-GKEGSSVLFICKDELPFVRELEDAK 410
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 194 bits (494), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 130/390 (33%), Positives = 206/390 (52%), Gaps = 36/390 (9%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKD--VLGAARTGSGKTLAFLIPAVELLYN 166
L + +AI M F +T +Q + + P++ +D V+ A+TG+GKT AFLIP + L N
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 167 AQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL-------VIGGSARRGEAE 219
+F + +++ PTR+LA+Q A K K H GL ++GG+ R
Sbjct: 139 TKFDSQYMVKAVIVAPTRDLALQIEAEVK---KIHDMNYGLKKYACVSLVGGTDFRAAMN 195
Query: 220 RIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
++ K N+++ATPGRL+D L+ ++ + V+DEADR+LE F +++ I +L
Sbjct: 196 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 255
Query: 279 KKDRQTA------LFSATQTKKVEDLAR-LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
+K+ ++A LFSAT KV+ LA + + +++D D +E + Q +
Sbjct: 256 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315
Query: 332 PS-AKRFILLYSFLKRNLSK-----KVMVFFSSCNSVKFHSELLRYIQ------VDCFDI 379
A +K+ + + K ++F +VKF S L ++ + +
Sbjct: 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIF---APTVKFTSFLCSILKNEFKKDLPILEF 372
Query: 380 HGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGR 439
HGK Q KRT+ F K E GIL+CTDV ARG+D P V ++Q P E YIHR+GR
Sbjct: 373 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGR 432
Query: 440 TARGEGARGNALLFLIPEELQFLRYLKAAK 469
TAR G G+++LF+ +EL F+R L+ AK
Sbjct: 433 TARS-GKEGSSVLFICKDELPFVRELEDAK 461
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/390 (33%), Positives = 206/390 (52%), Gaps = 36/390 (9%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKD--VLGAARTGSGKTLAFLIPAVELLYN 166
L + +AI M F +T +Q + + P++ +D V+ A+TG+GKT AFLIP + L N
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 167 AQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL-------VIGGSARRGEAE 219
+F + +++ PTR+LA+Q A K K H GL ++GG+ R
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVK---KIHDMNYGLKKYACVSLVGGTDFRAAMN 144
Query: 220 RIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278
++ K N+++ATPGRL+D L+ ++ + V+DEADR+LE F +++ I +L
Sbjct: 145 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 204
Query: 279 KKDRQTA------LFSATQTKKVEDLAR-LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331
+K+ ++A LFSAT KV+ LA + + +++D D +E + Q +
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264
Query: 332 PS-AKRFILLYSFLKRNLSK-----KVMVFFSSCNSVKFHSELLRYIQ------VDCFDI 379
A +K+ + + K ++F +VKF S L ++ + +
Sbjct: 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIF---APTVKFTSFLCSILKNEFKKDLPILEF 321
Query: 380 HGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGR 439
HGK Q KRT+ F K E GIL+CTDV ARG+D P V ++Q P E YIHR+GR
Sbjct: 322 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGR 381
Query: 440 TARGEGARGNALLFLIPEELQFLRYLKAAK 469
TAR G G+++LF+ +EL F+R L+ AK
Sbjct: 382 TARS-GKEGSSVLFICKDELPFVRELEDAK 410
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 193/367 (52%), Gaps = 18/367 (4%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGK-DVLGAARTGSGKTLAFLIPAV 161
+F+ L LS + AI++ GF+ T IQ + +P + + +++ ARTGSGKT +F IP +
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 162 ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
EL+ NG I++ PTRELAIQ + L + + + GG A + +
Sbjct: 67 ELV-----NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI-KA 120
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+K N++V TPGR+LDH+ N KN+K ++DEAD L F +++ +I+ KD
Sbjct: 121 LKNANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNAC-NKD 178
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
++ LFSAT +++ +LA+ + +I + K+ N ++Q Y V +RF L
Sbjct: 179 KRILLFSATXPREILNLAK-KYXGDYSFI-----KAKI-NANIEQSYVEVNENERFEALC 231
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
LK N +VF + K + LR I IHG Q +R F + +
Sbjct: 232 RLLK-NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 290
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
IL+ TDV +RG+D+ ++ ++ Y P P+ Y HR+GRT R G +G A+ + E +
Sbjct: 291 ILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRA-GKKGKAISIINRREYKK 349
Query: 462 LRYLKAA 468
LRY++ A
Sbjct: 350 LRYIERA 356
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 12/359 (3%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV-E 162
F S L + G++ T IQ ++P + G+D++ A+TGSGKT AFL+P + +
Sbjct: 58 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 117
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
LL + V+++ PTRELAIQ A+ +G+V GG++ R + E I
Sbjct: 118 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177
Query: 223 KGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIM-KLLPKK 280
+G ++++ATPGRLLD + T FI +++ + +V+DEADR+L+ F E+MR+IM + +
Sbjct: 178 RGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP 235
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQG-YCVVPSAKRFIL 339
+ QT +FSAT E++ R++ + Y+ V G ++Q Y V AKR L
Sbjct: 236 EHQTLMFSATFP---EEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL 292
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
+ ++ + +VF + F + L + IHG + Q +R DF
Sbjct: 293 IEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS 350
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+L+ T VA+RGLDI + ++ YD P + +Y+HR+GRT R G G A F PE+
Sbjct: 351 MKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGR-VGNNGRATSFFDPEK 408
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 187/341 (54%), Gaps = 12/341 (3%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F+ L + I + GF+ + IQ A+P + G+D+L A+ G+GKT AF+IP +E
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ P+ N +++ PTRELA+QT V + L K+ + + GG+ R + R+
Sbjct: 82 -----KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 136
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+ V++LV TPGR+LD L + K + ++DEAD++L +F+ + QI+ LP
Sbjct: 137 NETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT- 194
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
Q+ LFSAT V++ + P I++ + ++T +G+ Q Y V ++ L
Sbjct: 195 HQSLLFSATFPLTVKEFM-VKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLN 250
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
+ + + ++F +S N V+ ++ + + C+ H + KQQ+R F +F + +
Sbjct: 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
L+C+D+ RG+DI AV+ ++ +D P + Y+HR+GR+ R
Sbjct: 311 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 351
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 187/360 (51%), Gaps = 26/360 (7%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SF + + + I+ + T +Q A+P + +D++ A+TGSGKT AFL+P +
Sbjct: 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 75
Query: 163 LLY-------------NAQFAPRNGTGV-IVICPTRELAIQTHAVAKDLLKYHSQTVGLV 208
+Y N ++ R + +V+ PTRELA+Q + A+ Y S+ V
Sbjct: 76 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCV 134
Query: 209 IGGSARRGEAER-IVKGVNLLVATPGRLLDHLQNTK-GFIYKNLKCLVIDEADRILEANF 266
+ G A G+ R + +G +LLVATPGRL+D ++ K G + K LV+DEADR+L+ F
Sbjct: 135 VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGF 192
Query: 267 EEEMRQIMK---LLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEG 323
E ++R+I++ + PK R T +FSAT K+++ LAR F +++ V GR T+E
Sbjct: 193 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR-DFLDEYIFLAV--GRVGSTSEN 249
Query: 324 LQQGYCVVP-SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGK 382
+ Q V S KR LL +VF + + L + C IHG
Sbjct: 250 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 309
Query: 383 QKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
+ Q+ R F + IL+ T VAARGLDI V ++ +D P + +EY+HR+GRT R
Sbjct: 310 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 369
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 193/364 (53%), Gaps = 11/364 (3%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +FD++GL + R I GF+ + IQ RA+ ++ G+DV+ +++G+GKT F I
Sbjct: 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
++ L + Q T +++ PTRELA+Q L Y + IGG+ + +
Sbjct: 96 LQCL-DIQV---RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 151
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G +++ TPGR+ D ++ + + +K LV+DEAD +L F+E++ + + LP
Sbjct: 152 LDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 210
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFIL 339
Q L SAT ++ ++ F T P+ I V R ++T EG++Q + V + +F
Sbjct: 211 T-QVVLISATLPHEILEMTN-KFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDT 266
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + ++F ++ V + +E +R +HG Q++R + +F
Sbjct: 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 326
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDV ARGLD+P V I+ YD P+ + YIHR+GR+ R G +G A+ F+ +++
Sbjct: 327 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR-YGRKGVAINFVKNDDI 385
Query: 460 QFLR 463
+ LR
Sbjct: 386 RILR 389
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 193/364 (53%), Gaps = 11/364 (3%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +FD++GL + R I GF+ + IQ RA+ ++ G+DV+ +++G+GKT F I
Sbjct: 37 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 96
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
++ L + Q T +++ PTRELA+Q L Y + IGG+ + +
Sbjct: 97 LQCL-DIQV---RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G +++ TPGR+ D ++ + + +K LV+DEAD +L F+E++ + + LP
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFIL 339
Q L SAT ++ ++ F T P+ I V R ++T EG++Q + V + +F
Sbjct: 212 T-QVVLISATLPHEILEMTN-KFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDT 267
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + ++F ++ V + +E +R +HG Q++R + +F
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 327
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDV ARGLD+P V I+ YD P+ + YIHR+GR+ R G +G A+ F+ +++
Sbjct: 328 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR-YGRKGVAINFVKNDDI 386
Query: 460 QFLR 463
+ LR
Sbjct: 387 RILR 390
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 193/364 (53%), Gaps = 11/364 (3%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +FD++GL + R I GF+ + IQ RA+ ++ G+DV+ +++G+GKT F I
Sbjct: 37 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 96
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
++ L + Q T +++ PTRELA+Q L Y + IGG+ + +
Sbjct: 97 LQCL-DIQV---RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G +++ TPGR+ D ++ + + +K LV+DEAD +L F+E++ + + LP
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFIL 339
Q L SAT ++ ++ F T P+ I V R ++T EG++Q + V + +F
Sbjct: 212 T-QVVLISATLPHEILEMTN-KFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDT 267
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + ++F ++ V + +E +R +HG Q++R + +F
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 327
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDV ARGLD+P V I+ YD P+ + YIHR+GR+ R G +G A+ F+ +++
Sbjct: 328 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR-YGRKGVAINFVKNDDI 386
Query: 460 QFLR 463
+ LR
Sbjct: 387 RILR 390
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 193/364 (53%), Gaps = 11/364 (3%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +FD++GL + R I GF+ + IQ RA+ ++ G+DV+ +++G+GKT F I
Sbjct: 15 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 74
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
++ L + Q T +++ PTRELA+Q L Y + IGG+ + +
Sbjct: 75 LQCL-DIQV---RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 130
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ G +++ TPGR+ D ++ + + +K LV+DEAD +L F+E++ + + LP
Sbjct: 131 LDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 189
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFIL 339
Q L SAT ++ ++ F T P+ I V R ++T EG++Q + V + +F
Sbjct: 190 T-QVVLISATLPHEILEMTN-KFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDT 245
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399
L + ++F ++ V + +E +R +HG Q++R + +F
Sbjct: 246 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 305
Query: 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459
+L+ TDV ARGLD+P V I+ YD P+ + YIHR+GR+ R G +G A+ F+ +++
Sbjct: 306 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR-YGRKGVAINFVKNDDI 364
Query: 460 QFLR 463
+ LR
Sbjct: 365 RILR 368
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 192/362 (53%), Gaps = 11/362 (3%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+FD++GL + R I GF+ + IQ RA+ ++ G+DV+ +++G+GKT F + ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L + Q T +++ PTRELA+Q L Y + IGG+ + ++
Sbjct: 62 CL-DIQVRE---TQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLD 117
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
G +++ TPGR+ D ++ + + +K LV+DEAD +L F+E++ + + LP
Sbjct: 118 YGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT- 175
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFILLY 341
Q L SAT +V ++ F T P+ I V R ++T EG++Q + V + +F L
Sbjct: 176 QVVLISATLPHEVLEMTN-KFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
+ ++F ++ V + +E +R +HG Q++R + +F
Sbjct: 233 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDV ARGLD+P V I+ YD P+ + YIHR+GR+ R G +G A+ F+ ++++
Sbjct: 293 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR-YGRKGVAVNFVKNDDIRV 351
Query: 462 LR 463
LR
Sbjct: 352 LR 353
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 192/362 (53%), Gaps = 11/362 (3%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+FD++GL + R I GF+ + IQ RA+ ++ G+DV+ +++G+GKT F + ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222
L + Q T +++ PTRELA+Q L Y + IGG+ + ++
Sbjct: 62 CL-DIQV---RETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 117
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
G +++ TPGR+ D ++ + + +K LV+DEAD +L F+E++ + + LP
Sbjct: 118 YGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT- 175
Query: 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFILLY 341
Q L SAT ++ ++ F T P+ I V R ++T EG++Q + V + +F L
Sbjct: 176 QVVLISATLPHEILEMTN-KFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 232
Query: 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401
+ ++F ++ V + +E +R +HG Q++R + +F
Sbjct: 233 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461
+L+ TDV ARGLD+P V I+ YD P+ + YIHR+GR+ R G +G A+ F+ ++++
Sbjct: 293 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR-YGRKGVAVNFVKNDDIRV 351
Query: 462 LR 463
LR
Sbjct: 352 LR 353
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 191/350 (54%), Gaps = 28/350 (8%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ 168
+++ +AI++MGF+ T++Q++ +P ++ GK+V+ A+TGSGKT A+ IP +EL
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 169 FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLL 228
G +V+ PTREL Q + +D+ +Y V V GG + + R V+ +++
Sbjct: 56 -----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR-VRNADIV 109
Query: 229 VATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALF 287
VATPGRLLD +KG I + + ++IDEAD + E F ++++ I+ + + T LF
Sbjct: 110 VATPGRLLDLW--SKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNR-KITGLF 166
Query: 288 SATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRN 347
SAT +++ + + F T I+ G V + + V R + L+ N
Sbjct: 167 SATIPEEIRKVVK-DFITNYEEIEACIGLANV-----EHKFVHVKDDWRSKV--QALREN 218
Query: 348 LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407
K V+VF + N V ++L+R + ++ G Q R F + E +L+ TD
Sbjct: 219 KDKGVIVFVRTRNRV---AKLVRLFD-NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD 274
Query: 408 VAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
VA+RGLDIP V+ ++ +D P + + YIHR+GRT R G +G A+ F++ E
Sbjct: 275 VASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR-MGRKGEAITFILNE 323
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 186/360 (51%), Gaps = 14/360 (3%)
Query: 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV 161
+ F L RAI D GF+ +++Q +P ++G DVL A++G GKT F++ +
Sbjct: 7 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 66
Query: 162 ELLYNAQFAPRNG-TGVIVICPTRELAIQTHAVAKDLLKYHSQT-VGLVIGGSARRGEAE 219
+ Q P G V+V+C TRELA Q + KY V + GG + + + E
Sbjct: 67 Q-----QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 121
Query: 220 RIVKGV-NLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA-NFEEEMRQIMKLL 277
+ K +++V TPGR+L L K K++K ++DEAD++LE + ++++I ++
Sbjct: 122 VLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMT 180
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P ++Q +FSAT +K++ + R F P+ I VDD TK+T GLQQ Y + ++
Sbjct: 181 PH-EKQVMMFSATLSKEIRPVCR-KFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEKN 237
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L+ L +V++F S ++LL IH Q++R + + F
Sbjct: 238 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 297
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
++ IL+ T++ RG+DI V+ YD P++ Y+HRV R R G +G A+ F+ E
Sbjct: 298 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF-GTKGLAITFVSDE 356
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 186/361 (51%), Gaps = 14/361 (3%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
++ F L RAI D GF+ +++Q +P ++G DVL A++G GKT F++
Sbjct: 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66
Query: 161 VELLYNAQFAPRNG-TGVIVICPTRELAIQTHAVAKDLLKYHSQT-VGLVIGGSARRGEA 218
++ Q P G V+V+C TRELA Q + KY V + GG + + +
Sbjct: 67 LQ-----QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 219 ERIVKGV-NLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA-NFEEEMRQIMKL 276
E + K +++V TPGR+L L K K++K ++DE D++LE + ++++I ++
Sbjct: 122 EVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 180
Query: 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336
P ++Q +FSAT +K++ + R F P+ I VDD TK+T GLQQ Y + ++
Sbjct: 181 TPH-EKQVMMFSATLSKEIRPVCR-KFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEK 237
Query: 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
L+ L +V++F S ++LL IH Q++R + + F
Sbjct: 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
++ IL+ T++ RG+DI V+ YD P++ Y+HRV R R G +G A+ F+
Sbjct: 298 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF-GTKGLAITFVSD 356
Query: 457 E 457
E
Sbjct: 357 E 357
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 186/361 (51%), Gaps = 14/361 (3%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
++ F L RAI D GF+ +++Q +P ++G DVL A++G GKT F++
Sbjct: 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66
Query: 161 VELLYNAQFAPRNG-TGVIVICPTRELAIQTHAVAKDLLKYHSQT-VGLVIGGSARRGEA 218
++ Q P G V+V+C TRELA Q + KY V + GG + + +
Sbjct: 67 LQ-----QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 219 ERIVKGV-NLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA-NFEEEMRQIMKL 276
E + K +++V TPGR+L L K K++K ++DE D++LE + ++++I ++
Sbjct: 122 EVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 180
Query: 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336
P ++Q +FSAT +K++ + R F P+ I VDD TK+T GLQQ Y + ++
Sbjct: 181 TPH-EKQVMMFSATLSKEIRPVCR-KFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEK 237
Query: 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC 396
L+ L +V++F S ++LL IH Q++R + + F
Sbjct: 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456
++ IL+ T++ RG+DI V+ YD P++ Y+HRV R R G +G A+ F+
Sbjct: 298 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF-GTKGLAITFVSD 356
Query: 457 E 457
E
Sbjct: 357 E 357
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 177/337 (52%), Gaps = 15/337 (4%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
FD + L ++ R + GF+ + IQ RA+ P++ G DVL A++G+GKT F I A++
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
+ + AP+ +++ PTRELA+Q V L + V IGG++ +AE + +
Sbjct: 84 IDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 138
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++V TPGR+ D++Q + F +K ++DEAD +L + F+E++ QI LLP Q
Sbjct: 139 DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT-TQ 196
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
L SAT V ++ F PV I V + ++T EG++Q Y V + +
Sbjct: 197 VVLLSATMPNDVLEVTT-KFMRNPVRILV--KKDELTLEGIKQFYVNVEEEEYKYECLTD 253
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD---IHGKQKQQKRTTTFFDFCKAEK 400
L ++S V F CN+ + EL ++ D F I+ QQ+R T +F
Sbjct: 254 LYDSISVTQAVIF--CNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 311
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRV 437
IL+ TD+ ARG+D+ V ++ YD P + YIHR+
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRI 348
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 174/337 (51%), Gaps = 15/337 (4%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
FD L ++ R + GF+ + IQ RA+ P++ G DVL A++G+GKT F I A++
Sbjct: 23 FDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
+ + AP+ + + PTRELA+Q V L + V IGG++ +AE + +
Sbjct: 83 IDTSVKAPQ----ALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGL-R 137
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++V TPGR+ D++Q + F +K ++DEAD L + F+E++ QI LLP Q
Sbjct: 138 DAQIVVGTPGRVFDNIQRRR-FRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPT-TQ 195
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343
L SAT V ++ F PV I V + ++T EG++Q Y V + +
Sbjct: 196 VVLLSATXPNDVLEVTT-KFXRNPVRILV--KKDELTLEGIKQFYVNVEEEEYKYECLTD 252
Query: 344 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD---IHGKQKQQKRTTTFFDFCKAEK 400
L ++S V F CN+ + EL ++ D F I+ QQ+R T +F
Sbjct: 253 LYDSISVTQAVIF--CNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSS 310
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRV 437
IL+ TD+ ARG+D+ V ++ YD P + YIHR+
Sbjct: 311 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRI 347
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 124/204 (60%), Gaps = 5/204 (2%)
Query: 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPA 160
T +F LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P
Sbjct: 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP- 100
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ NA +V+ PTRELA Q + L +++GG ++
Sbjct: 101 ---ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157
Query: 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
+ K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P +
Sbjct: 158 LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-R 216
Query: 281 DRQTALFSATQTKKVEDLARLSFQ 304
DR+T LFSAT TKKV+ L R + +
Sbjct: 217 DRKTFLFSATMTKKVQKLQRAALK 240
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 172/337 (51%), Gaps = 11/337 (3%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SFD + LS+ R I GF+ + IQ RA+ P + G DV+ A++G+GKT F A+
Sbjct: 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF---AIS 97
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI- 221
+L + + T +V+ PTRELA Q V L Y + IGG+ R E +++
Sbjct: 98 ILQQIELDLK-ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 156
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++ +++V TPGR+ D L N + K +K V+DEAD +L F++++ I + L +
Sbjct: 157 MEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL-NSN 214
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
Q L SAT V ++ + F P+ I V + ++T EG++Q Y V + +
Sbjct: 215 TQVVLLSATMPSDVLEVTK-KFMRDPIRILVK--KEELTLEGIRQFYINVEREEWKLDTL 271
Query: 342 SFLKRNLS-KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L L+ + ++F ++ V + +E + +HG Q++R +F
Sbjct: 272 CDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSS 331
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRV 437
+L+ TD+ ARG+D+ V ++ YD P + YIHR+
Sbjct: 332 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 368
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 172/337 (51%), Gaps = 11/337 (3%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SFD + LS+ R I GF+ + IQ RA+ P + G DV+ A++G+GKT F A+
Sbjct: 15 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF---AIS 71
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI- 221
+L + + T +V+ PTRELA Q V L Y + IGG+ R E +++
Sbjct: 72 ILQQIELDLK-ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 130
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++ +++V TPGR+ D L N + K +K V+DEAD +L F++++ I + L +
Sbjct: 131 MEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL-NSN 188
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341
Q L SAT V ++ + F P+ I V + ++T EG++Q Y V + +
Sbjct: 189 TQVVLLSATMPSDVLEVTK-KFMRDPIRILV--KKEELTLEGIRQFYINVEREEWKLDTL 245
Query: 342 SFLKRNLS-KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400
L L+ + ++F ++ V + +E + +HG Q++R +F
Sbjct: 246 CDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSS 305
Query: 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRV 437
+L+ TD+ ARG+D+ V ++ YD P + YIHR+
Sbjct: 306 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 342
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 180/372 (48%), Gaps = 44/372 (11%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPA 160
SFD LGL+ + I M FQ ++IQ RA+P L+ ++++ +++G+GKT AF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ + +P+ I + P+RELA QT V +++ K+ T L++ S +
Sbjct: 66 LTRVNPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN---- 117
Query: 221 IVKGVN--LLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQIMKLL 277
K +N ++V TPG +LD L K + +K V+DEAD +L + ++ ++ + L
Sbjct: 118 --KQINAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL 174
Query: 278 PKKDRQTALFSATQTKKVEDLAR--------LSFQTTPVYIDVDDGRTKVTNEGLQQGYC 329
PK D Q LFSAT V A+ L QT V +D ++Q Y
Sbjct: 175 PK-DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD-----------AIKQLYM 222
Query: 330 VVPS-AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKR 388
+ A +F +L ++F ++ + L+ + +HG + Q+R
Sbjct: 223 DCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQER 282
Query: 389 TTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD------EPKEYIHRVGRTAR 442
DF + +L+ T+V ARG+DIP V +V YD P +P YIHR+GRT R
Sbjct: 283 DRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGR 342
Query: 443 GEGARGNALLFL 454
G +G A+ F+
Sbjct: 343 F-GRKGVAISFV 353
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 180/372 (48%), Gaps = 44/372 (11%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPA 160
SFD LGL+ + I M FQ ++IQ RA+P L+ ++++ +++G+GKT AF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 161 VELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220
+ + +P+ I + P+RELA QT V +++ K+ T L++ S +
Sbjct: 66 LTRVNPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN---- 117
Query: 221 IVKGVN--LLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQIMKLL 277
K +N ++V TPG +LD L K + +K V+DEAD +L + ++ ++ + L
Sbjct: 118 --KQINAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL 174
Query: 278 PKKDRQTALFSATQTKKVEDLAR--------LSFQTTPVYIDVDDGRTKVTNEGLQQGYC 329
PK D Q LFSAT V A+ L QT V +D ++Q Y
Sbjct: 175 PK-DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD-----------AIKQLYM 222
Query: 330 VVPS-AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKR 388
+ A +F +L ++F ++ + L+ + +HG + Q+R
Sbjct: 223 DCKNEADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQER 282
Query: 389 TTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD------EPKEYIHRVGRTAR 442
DF + +L+ T+V ARG+DIP V +V YD P +P YIHR+GRT R
Sbjct: 283 DRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGR 342
Query: 443 GEGARGNALLFL 454
G +G A+ F+
Sbjct: 343 F-GRKGVAISFV 353
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 118/201 (58%), Gaps = 6/201 (2%)
Query: 114 FRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA--P 171
++I +G T IQ++A P ++ G D++ A+TG+GKTL++L+P L + +
Sbjct: 32 LKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 91
Query: 172 RNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVAT 231
RNG G++V+ PTRELA+ A Y + GG R G+ E I KGV++++AT
Sbjct: 92 RNGPGMLVLTPTRELALHVEAECSK-YSYKGLKSICIYGGRNRNGQIEDISKGVDIIIAT 150
Query: 232 PGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQ 291
PGRL D LQ +++ LVIDEAD++L+ FE ++R+I+ L + DRQT + SAT
Sbjct: 151 PGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL-LDVRPDRQTVMTSATW 208
Query: 292 TKKVEDLARLSFQTTPVYIDV 312
V LA LS+ P+ + V
Sbjct: 209 PDTVRQLA-LSYLKDPMIVYV 228
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 3/198 (1%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F + I F T IQA+ P + G D++G A+TGSGKTL++L+PA+
Sbjct: 44 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 103
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + F R +G +V+ PTRELA Q VA + + + GG+ + + +
Sbjct: 104 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 163
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L+ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 164 ERGVEICIATPGRLIDFLECGKTNLRRTTY-LVLDEADRMLDMGFEPQIRKIVDQI-RPD 221
Query: 282 RQTALFSATQTKKVEDLA 299
RQT ++SAT K+V LA
Sbjct: 222 RQTLMWSATWPKEVRQLA 239
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 3/198 (1%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+F + I F T IQA+ P + G D++G A+TGSGKTL++L+PA+
Sbjct: 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 89
Query: 163 LLYNAQFAPR-NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221
+ + F R +G +V+ PTRELA Q VA + + + GG+ + + +
Sbjct: 90 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+GV + +ATPGRL+D L+ K + + LV+DEADR+L+ FE ++R+I+ + + D
Sbjct: 150 ERGVEICIATPGRLIDFLECGKTNLRRTTY-LVLDEADRMLDMGFEPQIRKIVDQI-RPD 207
Query: 282 RQTALFSATQTKKVEDLA 299
RQT ++SAT K+V LA
Sbjct: 208 RQTLMWSATWPKEVRQLA 225
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 117/212 (55%), Gaps = 12/212 (5%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F L A+ G T IQA A+P + GKD++G ARTG+GKTLAF +P E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL--LKYHSQTVGLVIGGSARRGEAERI 221
L +Q R +V+ PTRELA+Q VA +L + H + V V GG+ + E +
Sbjct: 63 LAPSQERGRKPRA-LVLTPTRELALQ---VASELTAVAPHLKVVA-VYGGTGYGKQKEAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
++G + +VATPGR LD+L+ +G + ++ V+DEAD +L FEEE+ ++ P
Sbjct: 118 LRGADAVVATPGRALDYLR--QGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP-P 174
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDV 312
RQT LFSAT + LA + PV I+V
Sbjct: 175 SRQTLLFSATLPSWAKRLAE-RYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 117/212 (55%), Gaps = 12/212 (5%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F L A+ G T I+A A+P + GKD++G ARTG+GKTLAF +P E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL--LKYHSQTVGLVIGGSARRGEAERI 221
L +Q R +V+ PTRELA+Q VA +L + H + V V GG+ + E +
Sbjct: 63 LAPSQERGRKPRA-LVLTPTRELALQ---VASELTAVAPHLKVVA-VYGGTGYGKQKEAL 117
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280
++G + +VATPGR LD+L+ +G + ++ V+DEAD +L FEEE+ ++ P
Sbjct: 118 LRGADAVVATPGRALDYLR--QGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP-P 174
Query: 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDV 312
RQT LFSAT + LA + PV I+V
Sbjct: 175 SRQTLLFSATLPSWAKRLAE-RYMKNPVLINV 205
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 12/232 (5%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+FD L L I +Q T IQ A+P ++ +D++ A+TGSGKT AFLIP +
Sbjct: 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 163 LL----YNAQ-FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217
L N Q ++ +++ PTRELAIQ + ++ +V GG+ +
Sbjct: 84 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 143
Query: 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL- 276
+ G +LLVATPGRL+D ++ K + K +V+DEADR+L+ FE ++R+I++
Sbjct: 144 IREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 202
Query: 277 -LPKK-DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQ 326
+P +RQT +FSAT K+++ LA F +++ V GR T++ ++Q
Sbjct: 203 NMPSGINRQTLMFSATFPKEIQKLAA-DFLYNYIFMTV--GRVGSTSDSIKQ 251
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 115/209 (55%), Gaps = 8/209 (3%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
FD + L ++ R + GF+ + IQ RA+ P++ G DVL A++G+GKT F I A++
Sbjct: 16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
+ + AP+ +++ PTRELA+Q V L + V IGG++ +AE + +
Sbjct: 76 IDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 130
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++V TPGR+ D++Q + F +K ++DEAD +L + F+E++ QI LLP Q
Sbjct: 131 DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT-TQ 188
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDV 312
L SAT V ++ F PV I V
Sbjct: 189 VVLLSATMPNDVLEVTT-KFMRNPVRILV 216
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 8/209 (3%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
FD + L + R + GF+ + IQ RA+ P++ G DVL A++G+GKT F I A++
Sbjct: 23 FDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVK 223
+ + AP+ +++ PTRELA+Q V L + V IGG++ +AE + +
Sbjct: 83 IDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 137
Query: 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283
++V TPGR+ D++Q + F +K ++DEAD +L + F+E++ QI LLP Q
Sbjct: 138 DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT-TQ 195
Query: 284 TALFSATQTKKVEDLARLSFQTTPVYIDV 312
L SAT V ++ F PV I V
Sbjct: 196 VVLLSATMPNDVLEVTT-KFMRNPVRILV 223
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 182/371 (49%), Gaps = 35/371 (9%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLA 155
+ S SF+ L L + + MGF ++IQ A+P ++ ++++ +++G+GKT A
Sbjct: 37 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 96
Query: 156 FLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT--VGLVIGGSA 213
F++ + + A P+ + + PT ELA+QT V + + K++ + V G
Sbjct: 97 FVLAMLSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 152
Query: 214 RRGE--AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEEM 270
RG+ +E+IV G TPG +LD K K +K V+DEAD ++ +++
Sbjct: 153 ERGQKISEQIVIG------TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 206
Query: 271 RQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCV 330
+I ++LP ++ Q LFSAT V A+ + P + R + T + ++Q Y +
Sbjct: 207 IRIQRMLP-RNCQMLLFSATFEDSVWKFAQ---KVVPDPNVIKLKREEETLDTIKQYYVL 262
Query: 331 VPSA-KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQ 386
S ++F L + + M+F C++ K S L + + + G+ +
Sbjct: 263 CSSRDEKFQALCNLYGAITIAQAMIF---CHTRKTASWLAAELSKEGHQVALLSGEMMVE 319
Query: 387 KRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP------DEPKEYIHRVGRT 440
+R F + ++ +L+ T+V ARG+D+ V ++ +D P + + Y+HR+GRT
Sbjct: 320 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 379
Query: 441 ARGEGARGNAL 451
R G RG A+
Sbjct: 380 GRF-GKRGLAV 389
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 182/368 (49%), Gaps = 29/368 (7%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLA 155
+ S SF+ L L + + MGF ++IQ A+P ++ ++++ +++G+GKT A
Sbjct: 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 80
Query: 156 FLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215
F++ + + A P+ + + PT ELA+QT V + + K++ + L + + R
Sbjct: 81 FVLAMLSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPE---LKLAYAVRG 133
Query: 216 GEAERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEEMRQI 273
+ ER K +++ TPG +LD K K +K V+DEAD ++ +++ +I
Sbjct: 134 NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193
Query: 274 MKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS 333
++LP ++ Q LFSAT V A+ + P + R + T + ++Q Y + S
Sbjct: 194 QRMLP-RNCQMLLFSATFEDSVWKFAQ---KVVPDPNVIKLKREEETLDTIKQYYVLCSS 249
Query: 334 A-KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRT 389
++F L + + M+F C++ K S L + + + G+ ++R
Sbjct: 250 RDEKFQALCNLYGAITIAQAMIF---CHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 306
Query: 390 TTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP------DEPKEYIHRVGRTARG 443
F + ++ +L+ T+V ARG+D+ V ++ +D P + + Y+HR+GRT R
Sbjct: 307 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 366
Query: 444 EGARGNAL 451
G RG A+
Sbjct: 367 -GKRGLAV 373
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 182/371 (49%), Gaps = 35/371 (9%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLA 155
+ S SF+ L L + + MGF ++IQ A+P ++ ++++ +++G+GKT A
Sbjct: 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147
Query: 156 FLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT--VGLVIGGSA 213
F++ + + A P+ + + PT ELA+QT V + + K++ + V G
Sbjct: 148 FVLAMLSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 214 RRGE--AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEEM 270
RG+ +E+IV G TPG +LD K K +K V+DEAD ++ +++
Sbjct: 204 ERGQKISEQIVIG------TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 257
Query: 271 RQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCV 330
+I ++LP ++ Q LFSAT V A+ + P + R + T + ++Q Y +
Sbjct: 258 IRIQRMLP-RNCQMLLFSATFEDSVWKFAQ---KVVPDPNVIKLKREEETLDTIKQYYVL 313
Query: 331 VPSA-KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQ 386
S ++F L + + M+F C++ K S L + + + G+ +
Sbjct: 314 CSSRDEKFQALCNLYGAITIAQAMIF---CHTRKTASWLAAELSKEGHQVALLSGEMMVE 370
Query: 387 KRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP------DEPKEYIHRVGRT 440
+R F + ++ +L+ T+V ARG+D+ V ++ +D P + + Y+HR+GRT
Sbjct: 371 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 430
Query: 441 ARGEGARGNAL 451
R G RG A+
Sbjct: 431 GRF-GKRGLAV 440
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 182/368 (49%), Gaps = 29/368 (7%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLA 155
+ S SF+ L L + + MGF ++IQ A+P ++ ++++ +++G+GKT A
Sbjct: 58 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 117
Query: 156 FLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215
F++ + + A P+ + + PT ELA+QT V + + K++ + L + + R
Sbjct: 118 FVLAMLSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPE---LKLAYAVRG 170
Query: 216 GEAERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEEMRQI 273
+ ER K +++ TPG +LD K K +K V+DEAD ++ +++ +I
Sbjct: 171 NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 230
Query: 274 MKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS 333
++LP ++ Q LFSAT V A+ + P + R + T + ++Q Y + S
Sbjct: 231 QRMLP-RNCQMLLFSATFEDSVWKFAQ---KVVPDPNVIKLKREEETLDTIKQYYVLCSS 286
Query: 334 A-KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRT 389
++F L + + M+F C++ K S L + + + G+ ++R
Sbjct: 287 RDEKFQALCNLYGAITIAQAMIF---CHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 343
Query: 390 TTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP------DEPKEYIHRVGRTARG 443
F + ++ +L+ T+V ARG+D+ V ++ +D P + + Y+HR+GRT R
Sbjct: 344 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 403
Query: 444 EGARGNAL 451
G RG A+
Sbjct: 404 -GKRGLAV 410
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 184/382 (48%), Gaps = 45/382 (11%)
Query: 127 QIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184
+IQ +A+P L+ ++++G +++G+GKT AF + + + + P+ I + P+R
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ----AICLAPSR 199
Query: 185 ELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKG 244
ELA Q V ++ KY I S +G +++ TPG ++D L +
Sbjct: 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAK----IDAQIVIGTPGTVMD-LMKRRQ 254
Query: 245 FIYKNLKCLVIDEADRIL-EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLA-RLS 302
+++K V+DEAD +L + ++ +I LLP ++ Q LFSAT +++VE A R +
Sbjct: 255 LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP-RNTQIVLFSATFSERVEKYAERFA 313
Query: 303 FQTTPVYIDVDDGRTKVTNEGLQQGY--CVVPSAKRFIL--LYSFLKRNLSKKVMVFFSS 358
+ + ++ ++ EG++Q Y C K +L LY L S ++F
Sbjct: 314 PNANEIRLKTEE----LSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS---IIF--- 363
Query: 359 CNSVKFHSELLRYIQVDCFDIH---GKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDI 415
C E+ R + D + G + +R F +L+ T+V ARG+D+
Sbjct: 364 CKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDV 423
Query: 416 PAVDWIVQYDPP------DEPKEYIHRVGRTARGEGARGNALLFLIP----EELQFLR-Y 464
V+ +V YD P +P+ Y+HR+GRT R G G ++ F+ EE+ ++ Y
Sbjct: 424 SQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRF-GRVGVSINFVHDKKSWEEMNAIQEY 482
Query: 465 LK--AAKVPVKEYEFDQKKLAN 484
+ +VP +YE +K + N
Sbjct: 483 FQRPITRVPTDDYEELEKVVKN 504
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 108/188 (57%), Gaps = 7/188 (3%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F+ L + I +MG++ + IQ ++P + G+D+L A+ G+GK+ A+LIP +E
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT-VGLVIGGSARRGEAERIV 222
L ++ +VI PTRELA+Q + + K+ V GG+ R + R+
Sbjct: 65 LD----LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 120
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282
V++++ATPGR+LD ++ + +++ +V+DEAD++L +F + M I+ LP K+R
Sbjct: 121 DTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADKLLSQDFVQIMEDIILTLP-KNR 178
Query: 283 QTALFSAT 290
Q L+SAT
Sbjct: 179 QILLYSAT 186
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 8/211 (3%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
+FD + L + R I GF+ + IQ RA+ P + G DV+ A++G+GKT F I ++
Sbjct: 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 90
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI- 221
L +F T +V+ PTRELA Q V L Y T IGG+ R E +++
Sbjct: 91 QL-EIEFKE---TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
+ +++V TPGR+ D L N + K +K V+DEAD +L F++++ +I + L
Sbjct: 147 AEAPHIVVGTPGRVFDML-NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL-NTS 204
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDV 312
Q L SAT V ++ + F P+ I V
Sbjct: 205 IQVVLLSATMPTDVLEVTK-KFMRDPIRILV 234
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 12/218 (5%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLI 158
+ ++ F L RAI D GF+ +++Q +P ++G DVL A++G GKT F++
Sbjct: 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL 70
Query: 159 PAVELLYNAQFAPRNG-TGVIVICPTRELAIQTHAVAKDLLKYHSQT-VGLVIGGSARRG 216
++ Q P G V+V+C TRELA Q + KY V + GG + +
Sbjct: 71 ATLQ-----QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 125
Query: 217 EAERIVKGV-NLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA-NFEEEMRQIM 274
+ E + K +++V TPGR+L L K K++K ++DE D++LE + ++++I
Sbjct: 126 DEEVLKKNCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184
Query: 275 KLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDV 312
++ P ++Q +FSAT +K++ + R F P+ I V
Sbjct: 185 RMTP-HEKQVMMFSATLSKEIRPVCR-KFMQDPMEIFV 220
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 8/211 (3%)
Query: 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE 162
SFD + LS+ R I GF+ + IQ RA+ P + G DV+ A++G+G T F A+
Sbjct: 16 SFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATF---AIS 72
Query: 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI- 221
+L + T +V+ PTRELA Q V L Y + IGG+ R E + +
Sbjct: 73 ILQQIEL-DLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQ 131
Query: 222 VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281
++ +++V TPGR+ D L N + + V+DEAD +L F +++ I + L +
Sbjct: 132 MEAPHIIVGTPGRVFDML-NRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXL-NSN 189
Query: 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDV 312
Q L SAT V ++ F P+ I V
Sbjct: 190 TQVVLLSATMPSDVLEVTX-XFMRDPIRILV 219
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 10/131 (7%)
Query: 345 KRNLSKKVMVFFSSCNSVKFHSELLRYIQ------VDCFDIHGKQKQQKRTTTFFDFCKA 398
+R+ + K ++F +VKF S L ++ + + HGK Q KRT+ F K
Sbjct: 29 ERDSNYKAIIF---APTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 85
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
E GIL+CTDV ARG+D P V ++Q P E YIHR+GRTAR G G+++LF+ +E
Sbjct: 86 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS-GKEGSSVLFICKDE 144
Query: 459 LQFLRYLKAAK 469
L F+R L+ AK
Sbjct: 145 LPFVRELEDAK 155
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 10/131 (7%)
Query: 345 KRNLSKKVMVFFSSCNSVKFHSELLRYIQ------VDCFDIHGKQKQQKRTTTFFDFCKA 398
+R+ + K ++F +VKF S L ++ + + HGK Q KRT+ F K
Sbjct: 29 ERDSNYKAIIF---APTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 85
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
E GIL+CTDV ARG+D P V ++Q P E YIHR+GRTAR G G+++LF+ +E
Sbjct: 86 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS-GKEGSSVLFICKDE 144
Query: 459 LQFLRYLKAAK 469
L F+R L+ AK
Sbjct: 145 LPFVRELEDAK 155
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 10/131 (7%)
Query: 345 KRNLSKKVMVFFSSCNSVKFHSELLRYIQ------VDCFDIHGKQKQQKRTTTFFDFCKA 398
+R+ + K ++F +VKF S L ++ + + HGK Q KRT+ F K
Sbjct: 29 ERDSNYKAIIF---APTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 85
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
E GIL+CTDV ARG+D P V ++Q P E YIHR+GRTAR G G+++LF+ +E
Sbjct: 86 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS-GKEGSSVLFICKDE 144
Query: 459 LQFLRYLKAAK 469
L F+R L+ AK
Sbjct: 145 LPFVRELEDAK 155
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 16/196 (8%)
Query: 117 IQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTG 176
I D GFQ T IQ +A+P ++ G+++L +A TGSGKTLAF IP +L + G
Sbjct: 44 ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIP---ILMQLKQPANKGFR 100
Query: 177 VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVI-----GGSARRGEAERIVKGVNLLVAT 231
++I PTRELA Q H ++L+K S+ G I A + + K ++LV T
Sbjct: 101 ALIISPTRELASQIH---RELIKI-SEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT 156
Query: 232 PGRLLDHL-QNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPKKDRQTALF 287
P RL+ L Q+ G +++ LV+DE+D++ E F +++ I + A+F
Sbjct: 157 PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMF 216
Query: 288 SATQTKKVEDLARLSF 303
SAT VE +L+
Sbjct: 217 SATFAYDVEQWCKLNL 232
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 11/217 (5%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159
+ T F AI+ + F T+IQ R +P + G+ +G ++TG+GKT A+L+P
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP 61
Query: 160 AVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV----IGGSARR 215
E + R ++ PTRELA Q + + K+ + +V IGG+ ++
Sbjct: 62 IXEKIKPE----RAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQ 117
Query: 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMK 275
E++ ++++ TPGR+ D ++ + LV+DEAD L+ F ++ QI
Sbjct: 118 KALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEADLXLDXGFITDVDQIAA 176
Query: 276 LLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDV 312
P KD Q +FSAT +K++ + + P ++ V
Sbjct: 177 RXP-KDLQXLVFSATIPEKLKPFLK-KYXENPTFVHV 211
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLM--VGKDVLGAARTGSGKTLAFL 157
S SFD LGL+ + I M FQ ++IQ RA+P L+ ++++ +++G+GKT AF
Sbjct: 20 SAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 79
Query: 158 IPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217
+ + + +P+ I + P+RELA QT V +++ K+ T L++ S +
Sbjct: 80 LTMLTRVNPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN- 134
Query: 218 AERIVKGVN--LLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQIM 274
K +N ++V TPG +LD L K + +K V+DEAD +L + ++ ++
Sbjct: 135 -----KQINAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 188
Query: 275 KLLPKKDRQTALFSATQTKKVEDLAR 300
+ LP KD Q LFSAT V A+
Sbjct: 189 RFLP-KDTQLVLFSATFADAVRQYAK 213
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 19/194 (9%)
Query: 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVEL 163
F+SL LS+ ++ GF+ + +Q +A+P G D++ A++G+GKT F A++
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL-LKYHSQTVGLVIGGSARRGEAERIV 222
L + T ++++ PTRE+A+Q H+V + +K + IGG+ + R+
Sbjct: 86 LVLENLS----TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL- 140
Query: 223 KGVNLLVATPGRL-----LDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQIMKL 276
K ++ V +PGR+ LD+L +++ ++DEAD++L E +F+E++ I
Sbjct: 141 KKCHIAVGSPGRIKQLIELDYLNP------GSIRLFILDEADKLLEEGSFQEQINWIYSS 194
Query: 277 LPKKDRQTALFSAT 290
LP + A+ SAT
Sbjct: 195 LPASKQMLAV-SAT 207
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 20/201 (9%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG---KDVLGAARTGSGKTL 154
+ S SF+ L L + + MGF ++IQ A+P LM+ ++++ +++G+GKT
Sbjct: 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTA 79
Query: 155 AFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT--VGLVIGGS 212
AF++ + + A P+ + + PT ELA+QT V + + K++ + V G
Sbjct: 80 AFVLAMLSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 135
Query: 213 ARRGE--AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEE 269
RG+ +E+IV G TPG +LD K K +K V+DEAD ++ +++
Sbjct: 136 LERGQKISEQIVIG------TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 189
Query: 270 MRQIMKLLPKKDRQTALFSAT 290
+I ++LP ++ Q LFSAT
Sbjct: 190 SIRIQRMLP-RNCQMLLFSAT 209
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 20/201 (9%)
Query: 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG---KDVLGAARTGSGKTL 154
+ S SF+ L L + + MGF ++IQ A+P LM+ ++++ +++G+GKT
Sbjct: 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTA 146
Query: 155 AFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT--VGLVIGGS 212
AF++ + + A P+ + + PT ELA+QT V + + K++ + V G
Sbjct: 147 AFVLAMLSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 202
Query: 213 ARRGE--AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEE 269
RG+ +E+IV G TPG +LD K K +K V+DEAD ++ +++
Sbjct: 203 LERGQKISEQIVIG------TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 256
Query: 270 MRQIMKLLPKKDRQTALFSAT 290
+I ++LP ++ Q LFSAT
Sbjct: 257 SIRIQRMLP-RNCQMLLFSAT 276
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 319 VTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD 378
+T ++ V +F LL L ++F + V ++ L + C
Sbjct: 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDK 64
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438
IHG Q+ R +F + E L+ TDVAARG+DI + ++ YD P E + Y+HR G
Sbjct: 65 IHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTG 124
Query: 439 RTARGEGARGNALLFLIPEELQFL 462
RT R G +G A+ F+ E +FL
Sbjct: 125 RTGRA-GNKGKAISFVTAFEKRFL 147
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%)
Query: 318 KVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF 377
++T +G+ Q Y V ++ L + R + ++F +S V+ ++ + + CF
Sbjct: 13 ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF 72
Query: 378 DIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRV 437
IH K +Q+ R F DF L+CTD+ RG+DI AV+ ++ +D P + Y+HR+
Sbjct: 73 YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRI 132
Query: 438 GRTAR 442
GR+ R
Sbjct: 133 GRSGR 137
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 331 VPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTT 390
V + + L L++ V++F V E L V+ IHG + Q++RT
Sbjct: 37 VKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTK 95
Query: 391 TFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGN 449
F + +K +L+ TDVA++GLD PA+ ++ YD P+E + Y+HR+GRT G GN
Sbjct: 96 AIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRT----GCSGN 150
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 320 TNEGLQQGYCVVP-SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD 378
T+E + Q V S KR LL +VF + + L + C
Sbjct: 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTS 75
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438
IHG + Q+ R F + IL+ T VAARGLDI V ++ +D P + +EY+HR+G
Sbjct: 76 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 135
Query: 439 RTAR 442
RT R
Sbjct: 136 RTGR 139
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398
LL LK+ + + +VF V + LR ++ + G+ Q KR +
Sbjct: 20 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 79
Query: 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458
+L+ TDVAARG+DIP V + +D P Y+HR+GRTAR G +G A+ + +
Sbjct: 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA-GRKGTAISLVEAHD 138
Query: 459 LQFL----RYLKAAKVPVKEYEFDQ 479
L RY++ P+K D+
Sbjct: 139 HLLLGKVGRYIEE---PIKARVIDE 160
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD------EPKE 432
+HG + Q+R DF + +L+ T+V ARG+DIP V +V YD P +P
Sbjct: 65 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPAT 124
Query: 433 YIHRVGRTARGEGARGNALLFL 454
YIHR+GRT R G +G A+ F+
Sbjct: 125 YIHRIGRTGRF-GRKGVAISFV 145
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD------EPKE 432
+HG + Q+R DF + +L+ T+V ARG+DIP V +V YD P +P
Sbjct: 66 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPAT 125
Query: 433 YIHRVGRTARGEGARGNALLFL 454
YIHR+GRT R G +G A+ F+
Sbjct: 126 YIHRIGRTGR-FGRKGVAISFV 146
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD------EPKE 432
+HG + Q+R DF + +L+ T+V ARG+DIP V +V YD P +P
Sbjct: 67 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPAT 126
Query: 433 YIHRVGRTARGEGARGNALLFL 454
YIHR+GRT R G +G A+ F+
Sbjct: 127 YIHRIGRTGR-FGRKGVAISFV 147
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 323 GLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGK 382
GLQQ Y + ++ L+ L +V++F S ++LL IH
Sbjct: 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 64
Query: 383 QKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
Q++R + + F ++ IL+ T++ RG+DI V+ YD P++ Y+HRV R R
Sbjct: 65 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 124
Query: 443 GEGARGNALLFLIPE 457
G +G A+ F+ E
Sbjct: 125 F-GTKGLAITFVSDE 138
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%)
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
P R +L L + MVF + + ++ L + +HG Q +R
Sbjct: 11 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERV 70
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIH 435
F + E +L+ TDVAARGLDIP VD +V Y PD + Y H
Sbjct: 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%)
Query: 332 PSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTT 391
P R +L L + MVF + + ++ L + +HG Q +R
Sbjct: 14 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERV 73
Query: 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIH 435
F + E +L+ TDVAARGLDIP VD +V Y PD + Y H
Sbjct: 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 90/399 (22%), Positives = 156/399 (39%), Gaps = 52/399 (13%)
Query: 121 GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180
G+Q Q + ++ G+D L TG GK+L + IPA+ L NG +V+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGL-TVVV 71
Query: 181 CPTRELA------IQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPG 233
P L +Q + VA L ++ L + R G+ + LL P
Sbjct: 72 SPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ-------IRLLYIAPE 124
Query: 234 RLLDHLQN-TKGFIYKNLKCLVIDEADRILEA--NFEEE------MRQIMKLLPKKDRQT 284
RL+ L N + + N L +DEA I + +F E +RQ LP
Sbjct: 125 RLM--LDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF----M 178
Query: 285 ALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFL 344
AL + +D+ RL P+ R + Y ++ K L ++
Sbjct: 179 ALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIR-------YMLMEKFKPLDQLMRYV 231
Query: 345 KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILL 404
+ K +++ +S V+ + L+ + H + R F + + I++
Sbjct: 232 QEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVV 291
Query: 405 CTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRY 464
T G++ P V ++V +D P + Y GR R +G A+LF P ++ +LR
Sbjct: 292 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR-DGLPAEAMLFYDPADMAWLRR 350
Query: 465 LKAAKVPVKEYEFDQKKLANVQSHLE-----KLVANNYY 498
K + + ++ KL + + E +LV NY+
Sbjct: 351 CLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYF 389
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 91/406 (22%), Positives = 153/406 (37%), Gaps = 60/406 (14%)
Query: 118 QDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGV 177
+ G+Q Q + ++ G+D L TG GK+L + IPA+ L NG
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLL---------NGL-T 68
Query: 178 IVICPTRELA------IQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAERIVKGVNLLVA 230
+V+ P L +Q + VA L ++ L + R G+ + LL
Sbjct: 69 VVVSPLISLXKDQVDQLQANGVAAACLNSTQTREQQLEVXTGCRTGQ-------IRLLYI 121
Query: 231 TPGRL-----LDHLQNTKGFIYKNLKCLVIDEADRILEA--NFEEE------MRQIMKLL 277
P RL L+HL + N L +DEA I + +F E +RQ L
Sbjct: 122 APERLXLDNFLEHL------AHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175
Query: 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337
P AL + +D+ RL P+ R + Y + K
Sbjct: 176 PF----XALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIR-------YXLXEKFKPL 224
Query: 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397
L +++ K +++ +S V+ + L+ + H + R F +
Sbjct: 225 DQLXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR 284
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457
+ I++ T G++ P V ++V +D P + Y GR R +G A LF P
Sbjct: 285 DDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGR-DGLPAEAXLFYDPA 343
Query: 458 ELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLE-----KLVANNYY 498
+ +LR K + + ++ KL + E +LV NY+
Sbjct: 344 DXAWLRRCLEEKPQGQLQDIERHKLNAXGAFAEAQTCRRLVLLNYF 389
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 132/316 (41%), Gaps = 49/316 (15%)
Query: 148 TGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL 207
GSGKT+ + + +L N + G + PT LAIQ + + + V L
Sbjct: 398 VGSGKTV---VAQLAILDNYE----AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVAL 450
Query: 208 VIGGSARRGEAERIVKG-----VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262
+IG + E E+I G +++++ T + + + +KNL ++IDE R
Sbjct: 451 LIGATTP-SEKEKIKSGLRNGQIDVVIGTHALIQEDVH------FKNLGLVIIDEQHRF- 502
Query: 263 EANFEEEMRQIMKLLPK-KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTN 321
++Q L+ K K T + SAT + LA V ++ GR +V
Sbjct: 503 ------GVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQT 556
Query: 322 EGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFF-------SSCNSVKFHSELLRYIQV 374
+VP R +Y F+++ + + F S +VK E+ Y+
Sbjct: 557 -------MLVP-MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSK 608
Query: 375 DCFD------IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD 428
+ F +HG+ Q+++ +F + IL+ T V G+D+P + +V +P
Sbjct: 609 EVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPER 668
Query: 429 EPKEYIHRV-GRTARG 443
+H++ GR RG
Sbjct: 669 FGLAQLHQLRGRVGRG 684
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 322 EGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD--- 378
EG++Q Y V + + L ++S V F CN+ + EL ++ D F
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIF--CNTRRKVEELTTKLRNDKFTVSA 59
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRV 437
I+ QQ+R T +F IL+ TD+ ARG+D+ V ++ YD P + YIHR+
Sbjct: 60 IYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRI 118
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP----DEP--KE 432
+ G+ ++R + F ++ +L+ T+V ARG+D+ V +V +D P +EP +
Sbjct: 64 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYET 123
Query: 433 YIHRVGRTARGEGARGNALLFLIPEEL 459
Y+HR+GRT R G +G A + +EL
Sbjct: 124 YLHRIGRTGRF-GKKGLAFNMIEVDEL 149
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 385 QQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
Q+++ +F + E +L+ T V GLD+P VD +V Y+P I R GRT R
Sbjct: 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ 168
+S + +++ G + + QA AV + GK++L A T +GKTL + V +
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV------R 63
Query: 169 FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLL 228
A + G + V+ P R LA + + K K +GL IG S E+ G +
Sbjct: 64 EAIKGGKSLYVV-PLRALAGEKYESFKKWEK-----IGLRIGISTGDYESRDEHLGDCDI 117
Query: 229 VATPGRLLDHLQNTKGFIYKNLKCLVIDE 257
+ T D L + K + CLV+DE
Sbjct: 118 IVTTSEKADSLIRNRASWIKAVSCLVVDE 146
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI----CPTRELAIQT 190
P M GK+ + A TG GKT L+ L +F P+ G +V P E Q
Sbjct: 24 PAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKF-PQGQKGKVVFFANQIPVYE---QN 77
Query: 191 HAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQ 240
+V + H V + G +A E+IV+ ++++ TP L+++L+
Sbjct: 78 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 127
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI----CPTRELAIQT 190
P M GK+ + A TG GKT L+ L +F P+ G +V P E Q
Sbjct: 15 PAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKF-PQGQKGKVVFFANQIPVYE---QN 68
Query: 191 HAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQ 240
+V + H V + G +A E+IV+ ++++ TP L+++L+
Sbjct: 69 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 118
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI----CPTRELAIQT 190
P M GK+ + A TG GKT L+ L +F P+ G +V P E Q
Sbjct: 23 PAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKF-PQGQKGKVVFFANQIPVYE---QQ 76
Query: 191 HAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQ 240
+V + H V + G +A E+IV+ ++++ TP L+++L+
Sbjct: 77 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 126
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 129 QARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188
Q P + GK+ L A TGSGKT ++ ++ Q P +V T+ +
Sbjct: 253 QIELAQPAINGKNALICAPTGSGKTFVSILICE---HHFQNMPAGRKAKVVFLATK---V 306
Query: 189 QTHAVAKDLLKYHSQTVGLVIGGSARRG----EAERIVKGVNLLVATPGRLLDHLQN 241
+ K++ K+H + G + G + E++++ +++V TP L++ ++
Sbjct: 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 363
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 129 QARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188
Q P + GK+ L A TGSGKT ++ ++ Q P +V T+ +
Sbjct: 12 QIELAQPAINGKNALICAPTGSGKTFVSILICE---HHFQNMPAGRKAKVVFLATK---V 65
Query: 189 QTHAVAKDLLKYHSQTVGLVIGGSARRG----EAERIVKGVNLLVATPGRLLDHLQN 241
+ K++ K+H + G + G + E++++ +++V TP L++ ++
Sbjct: 66 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 122
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 129 QARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188
Q P + GK+ L A TGSGKT ++ ++ Q P +V T+ +
Sbjct: 253 QIELAQPAINGKNALICAPTGSGKTFVSILICE---HHFQNMPAGRKAKVVFLATK---V 306
Query: 189 QTHAVAKDLLKYHSQTVGLVIGGSARRG----EAERIVKGVNLLVATPGRLLDHLQN 241
+ K++ K+H + G + G + E++++ +++V TP L++ ++
Sbjct: 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 363
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLAFL 157
+ + L L + I+ G + + Q AV L+ G +L + TGSGKTL
Sbjct: 5 LEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAE 64
Query: 158 IPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196
+ + F +NG I + P R L + + KD
Sbjct: 65 MGII------SFLLKNGGKAIYVTPLRALTNEKYLTFKD 97
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli
pdb|2FSG|B Chain B, Complex Seca:atp From Escherichia Coli
Length = 853
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 21/129 (16%)
Query: 143 LGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202
+ RTG GKTL +PA NA G GV V+ LA + + L ++
Sbjct: 91 IAEXRTGEGKTLTATLPA---YLNAL----TGKGVHVVTVNDYLAQRDAENNRPLFEFLG 143
Query: 203 QTVGLVIGG----SARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF-----IYKNLKCL 253
TVG+ + G + R A I G N D+L++ F + + L
Sbjct: 144 LTVGINLPGXPAPAKREAYAADITYGTNNEYG-----FDYLRDNXAFSPEERVQRKLHYA 198
Query: 254 VIDEADRIL 262
++DE D IL
Sbjct: 199 LVDEVDSIL 207
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195
+++ + + RTG GKTL +PA NA G GV V+ LA + +
Sbjct: 84 MVLNERCIAEMRTGEGKTLTATLPA---YLNAL----TGKGVHVVTVNDYLAQRDAENNR 136
Query: 196 DLLKYHSQTVGLVIGG----SARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF-----I 246
L ++ TVG+ + G + R A I G N D+L++ F +
Sbjct: 137 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYG-----FDYLRDNMAFSPEERV 191
Query: 247 YKNLKCLVIDEADRIL 262
+ L ++DE D IL
Sbjct: 192 QRKLHYALVDEVDSIL 207
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195
+++ + + RTG GKTL +PA NA G GV V+ LA + +
Sbjct: 84 MVLNERCIAEMRTGEGKTLTATLPA---YLNA----LTGKGVHVVTVNDYLAQRDAENNR 136
Query: 196 DLLKYHSQTVGLVIGG----SARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF-----I 246
L ++ TVG+ + G + R A I G N D+L++ F +
Sbjct: 137 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYG-----FDYLRDNMAFSPEERV 191
Query: 247 YKNLKCLVIDEADRIL 262
+ L ++DE D IL
Sbjct: 192 QRKLHYALVDEVDSIL 207
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRY---IQVDCFDIHGKQKQQKRTTTF 392
R L +L + S+KV+V + + ++LR I+ F ++ R +
Sbjct: 490 RVEWLXGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGXSIIERDRAAAW 549
Query: 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442
F +LLC+++ + G + V +D P P R+GR R
Sbjct: 550 FAEEDTGAQVLLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDR 599
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 380 HGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIV 422
HG+ ++++ DF +L+CT + G+DIP + I+
Sbjct: 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
pdb|3BXZ|B Chain B, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
Length = 471
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195
+++ + + RTG GKTL +PA NA G GV V+ LA + +
Sbjct: 94 MVLNERCIAEMRTGEGKTLTATLPA---YLNAL----TGKGVHVVTVNDYLAQRDAENNR 146
Query: 196 DLLKYHSQTVGLVIGG----SARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF-----I 246
L ++ TVG+ + G + R A I G N D+L++ F +
Sbjct: 147 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYG-----FDYLRDNMAFSPEERV 201
Query: 247 YKNLKCLVIDEADRIL 262
+ L ++DE D IL
Sbjct: 202 QRKLHYALVDEVDSIL 217
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 202 SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261
S +G V+ GS E G LD Q +GF+ L C+ I E+D +
Sbjct: 44 SSCLGKVVSGSVDESE---------------GSFLDDGQMEEGFV---LTCIAIPESDLV 85
Query: 262 LEANFEEEM 270
+E + EEE+
Sbjct: 86 IETHKEEEL 94
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF---DIHGKQKQQKRTTTFFDFC 396
L L+R+ K+++F H+EL+ I F I + +++R F
Sbjct: 105 LREILERHRKDKIIIFTR-------HNELVYRIS-KVFLIPAITHRTSREEREEILEGFR 156
Query: 397 KAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
++ + V G+D+P + V +EYI R+GR R + A+L+
Sbjct: 157 TGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 213
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF--DIHGKQKQQKRTTTFFDFCK 397
L L+R+ K+++F H+EL+ I I + +++R F
Sbjct: 340 LREILERHRKDKIIIFTR-------HNELVYRISKVFLIPAITHRTSREEREEILEGFRT 392
Query: 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453
++ + V G+D+P + V +EYI R+GR R + A+L+
Sbjct: 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 105 DSLGLSQHTFRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLAFLIPAVEL 163
D L + + +++ G + QA A+ ++ GK+ L + T SGKTL I V
Sbjct: 4 DELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR 63
Query: 164 LYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL-VIGGSARRGEAERIV 222
+ G + I P + LA + +D + +GL V + + +
Sbjct: 64 ILT------QGGKAVYIVPLKALAEEKFQEFQDW-----EKIGLRVAMATGDYDSKDEWL 112
Query: 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDE 257
++++AT + L++ +I K++K LV DE
Sbjct: 113 GKYDIIIATAEKFDSLLRHGSSWI-KDVKILVADE 146
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 264 ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYI 310
+N+++E+R++MK+ + R AL + T + ++A S P ++
Sbjct: 463 SNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFL 509
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 264 ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYI 310
+N+++E+R++MK+ + R AL + T + ++A S P ++
Sbjct: 463 SNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFL 509
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,381,518
Number of Sequences: 62578
Number of extensions: 577192
Number of successful extensions: 1513
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 103
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)