Query 007743
Match_columns 591
No_of_seqs 465 out of 4060
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 14:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0342 ATP-dependent RNA heli 100.0 5E-95 1.1E-99 714.3 40.6 460 97-560 77-538 (543)
2 KOG0343 RNA Helicase [RNA proc 100.0 6.5E-89 1.4E-93 676.2 39.8 442 100-545 67-511 (758)
3 KOG0345 ATP-dependent RNA heli 100.0 2.2E-85 4.8E-90 641.4 40.9 442 102-547 4-454 (567)
4 KOG0348 ATP-dependent RNA heli 100.0 3.5E-81 7.5E-86 619.4 35.1 446 97-544 131-661 (708)
5 KOG0330 ATP-dependent RNA heli 100.0 2.7E-79 6E-84 585.7 34.5 381 101-490 60-441 (476)
6 KOG0338 ATP-dependent RNA heli 100.0 3.8E-79 8.2E-84 601.6 35.6 387 102-494 181-574 (691)
7 KOG0331 ATP-dependent RNA heli 100.0 1.7E-75 3.6E-80 597.4 37.8 362 102-466 91-457 (519)
8 COG0513 SrmB Superfamily II DN 100.0 5.8E-71 1.3E-75 589.3 42.3 360 102-467 29-391 (513)
9 KOG0347 RNA helicase [RNA proc 100.0 6.6E-71 1.4E-75 547.9 24.6 362 100-465 179-578 (731)
10 KOG0340 ATP-dependent RNA heli 100.0 3.9E-70 8.4E-75 516.9 28.3 372 100-478 5-383 (442)
11 KOG0333 U5 snRNP-like RNA heli 100.0 1.6E-69 3.4E-74 535.7 33.4 367 94-465 237-632 (673)
12 KOG0346 RNA helicase [RNA proc 100.0 5.6E-69 1.2E-73 521.5 36.5 429 102-536 19-498 (569)
13 KOG0328 Predicted ATP-dependen 100.0 1.7E-67 3.7E-72 484.0 28.9 359 99-467 24-383 (400)
14 PRK04837 ATP-dependent RNA hel 100.0 7E-65 1.5E-69 536.9 43.4 363 100-467 6-372 (423)
15 PTZ00110 helicase; Provisional 100.0 1.2E-64 2.6E-69 546.0 42.0 364 98-465 126-492 (545)
16 KOG0326 ATP-dependent RNA heli 100.0 3.9E-66 8.5E-71 482.5 23.1 365 101-476 84-449 (459)
17 PRK11634 ATP-dependent RNA hel 100.0 2.2E-63 4.7E-68 540.4 48.2 369 102-480 6-376 (629)
18 PRK10590 ATP-dependent RNA hel 100.0 4.1E-63 8.8E-68 526.7 41.9 359 103-467 2-362 (456)
19 PRK11776 ATP-dependent RNA hel 100.0 5.1E-63 1.1E-67 528.3 42.1 356 101-467 3-359 (460)
20 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-62 2.9E-67 528.9 43.3 362 97-465 116-483 (518)
21 PRK04537 ATP-dependent RNA hel 100.0 8.8E-63 1.9E-67 533.1 42.1 363 101-467 8-374 (572)
22 KOG0336 ATP-dependent RNA heli 100.0 9.1E-64 2E-68 480.5 28.9 362 98-465 215-580 (629)
23 KOG0341 DEAD-box protein abstr 100.0 1E-64 2.3E-69 483.8 20.6 356 96-458 164-529 (610)
24 KOG0335 ATP-dependent RNA heli 100.0 2.6E-63 5.6E-68 499.0 30.9 358 100-461 72-448 (482)
25 PRK11192 ATP-dependent RNA hel 100.0 1.8E-61 4E-66 513.3 42.8 358 103-466 2-361 (434)
26 KOG0339 ATP-dependent RNA heli 100.0 9.4E-61 2E-65 470.9 33.4 372 95-472 216-594 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 3E-59 6.5E-64 500.5 43.1 362 101-467 86-452 (475)
28 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-60 4.6E-65 468.7 31.0 359 102-465 127-548 (620)
29 KOG0332 ATP-dependent RNA heli 100.0 1.8E-59 4E-64 446.8 26.1 362 94-467 82-454 (477)
30 PTZ00424 helicase 45; Provisio 100.0 2.4E-57 5.1E-62 478.3 42.7 357 101-467 27-384 (401)
31 KOG0337 ATP-dependent RNA heli 100.0 4.9E-58 1.1E-62 443.3 29.5 357 101-466 20-377 (529)
32 KOG0334 RNA helicase [RNA proc 100.0 8.9E-58 1.9E-62 489.1 31.4 363 98-465 361-728 (997)
33 KOG0327 Translation initiation 100.0 4.6E-57 1E-61 434.7 26.9 366 102-479 26-393 (397)
34 PLN03137 ATP-dependent DNA hel 100.0 6.4E-53 1.4E-57 463.1 43.3 386 106-519 441-853 (1195)
35 KOG0344 ATP-dependent RNA heli 100.0 1E-54 2.2E-59 439.0 23.9 374 98-475 128-517 (593)
36 TIGR03817 DECH_helic helicase/ 100.0 1.8E-52 3.8E-57 463.8 40.0 351 108-475 20-407 (742)
37 KOG4284 DEAD box protein [Tran 100.0 4.9E-54 1.1E-58 433.9 24.9 350 99-459 22-381 (980)
38 TIGR00614 recQ_fam ATP-depende 100.0 7.3E-52 1.6E-56 441.7 35.8 364 119-518 6-382 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.8E-51 4E-56 449.6 37.9 376 107-519 7-393 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 4.5E-50 9.7E-55 440.3 36.7 367 116-518 4-381 (591)
41 KOG0329 ATP-dependent RNA heli 100.0 7.9E-50 1.7E-54 362.3 15.2 322 100-465 40-364 (387)
42 PRK13767 ATP-dependent helicas 100.0 8.5E-47 1.8E-51 426.7 39.1 339 109-456 18-397 (876)
43 COG0514 RecQ Superfamily II DN 100.0 2.4E-47 5.2E-52 397.9 30.6 371 115-518 7-387 (590)
44 PRK02362 ski2-like helicase; P 100.0 1E-46 2.2E-51 422.7 37.2 355 103-474 2-417 (737)
45 PRK00254 ski2-like helicase; P 100.0 3.1E-45 6.8E-50 409.6 37.8 338 103-458 2-389 (720)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.3E-45 1.6E-49 394.8 33.9 315 120-456 12-390 (844)
47 TIGR00580 mfd transcription-re 100.0 2.2E-43 4.7E-48 394.5 38.2 321 108-456 435-769 (926)
48 COG1201 Lhr Lhr-like helicases 100.0 1.3E-43 2.8E-48 382.9 34.7 395 109-517 8-422 (814)
49 PRK01172 ski2-like helicase; P 100.0 2.5E-43 5.5E-48 392.7 34.3 353 103-474 2-397 (674)
50 PRK09401 reverse gyrase; Revie 100.0 2.1E-42 4.5E-47 395.5 37.4 284 120-428 77-410 (1176)
51 PRK10689 transcription-repair 100.0 1.5E-42 3.1E-47 395.9 35.8 317 111-456 588-918 (1147)
52 PRK10917 ATP-dependent DNA hel 100.0 7.5E-42 1.6E-46 377.8 37.1 326 113-466 251-602 (681)
53 PRK09751 putative ATP-dependen 100.0 9.1E-42 2E-46 390.7 35.9 345 144-495 1-426 (1490)
54 PHA02653 RNA helicase NPH-II; 100.0 7.6E-42 1.7E-46 369.8 31.3 317 126-465 166-522 (675)
55 TIGR00643 recG ATP-dependent D 100.0 1.5E-41 3.3E-46 373.1 33.6 317 111-454 223-563 (630)
56 PRK14701 reverse gyrase; Provi 100.0 1.4E-40 3E-45 387.8 33.2 330 112-466 67-465 (1638)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.1E-40 8.8E-45 364.7 33.1 306 128-461 6-340 (819)
58 TIGR01054 rgy reverse gyrase. 100.0 1.9E-39 4.1E-44 371.7 36.7 291 113-428 67-409 (1171)
59 PRK11664 ATP-dependent RNA hel 100.0 9E-40 2E-44 362.9 30.5 304 128-459 9-341 (812)
60 KOG0349 Putative DEAD-box RNA 100.0 1.4E-40 3.1E-45 322.4 20.5 277 175-456 287-614 (725)
61 KOG0352 ATP-dependent DNA heli 100.0 2E-40 4.2E-45 321.3 21.1 334 112-467 6-372 (641)
62 PRK12898 secA preprotein trans 100.0 3.2E-39 7E-44 343.7 31.8 323 119-461 99-590 (656)
63 KOG0351 ATP-dependent DNA heli 100.0 1.1E-38 2.4E-43 351.6 30.9 334 116-469 256-604 (941)
64 TIGR01587 cas3_core CRISPR-ass 100.0 1.1E-38 2.4E-43 330.9 26.5 301 141-457 1-336 (358)
65 PRK09200 preprotein translocas 100.0 6.8E-38 1.5E-42 340.6 33.1 322 119-459 74-543 (790)
66 PHA02558 uvsW UvsW helicase; P 100.0 3.6E-38 7.9E-43 338.1 30.0 314 122-459 112-455 (501)
67 TIGR03714 secA2 accessory Sec 100.0 7E-37 1.5E-41 329.4 32.2 321 120-459 67-539 (762)
68 COG1202 Superfamily II helicas 100.0 7.2E-37 1.6E-41 306.7 27.3 339 101-456 193-552 (830)
69 COG1111 MPH1 ERCC4-like helica 100.0 8.9E-36 1.9E-40 297.4 32.1 325 121-458 12-482 (542)
70 TIGR00963 secA preprotein tran 100.0 9E-36 2E-40 318.8 32.9 319 120-459 53-519 (745)
71 COG1204 Superfamily II helicas 100.0 3.5E-36 7.5E-41 330.1 29.6 335 108-456 15-407 (766)
72 PRK13766 Hef nuclease; Provisi 100.0 1.1E-34 2.3E-39 329.6 36.1 325 121-457 12-479 (773)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 5.1E-35 1.1E-39 300.3 29.4 293 128-441 1-357 (357)
74 KOG0353 ATP-dependent DNA heli 100.0 2E-34 4.3E-39 275.7 23.1 335 104-460 73-470 (695)
75 PRK11131 ATP-dependent RNA hel 100.0 1.1E-33 2.4E-38 319.0 31.8 302 127-460 77-414 (1294)
76 COG1205 Distinct helicase fami 100.0 1.2E-33 2.6E-38 314.5 29.9 335 109-455 55-420 (851)
77 KOG0354 DEAD-box like helicase 100.0 3.3E-33 7.2E-38 295.0 27.8 326 121-458 59-530 (746)
78 TIGR00603 rad25 DNA repair hel 100.0 1.8E-32 3.9E-37 295.5 27.2 325 123-474 254-630 (732)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-32 4.3E-37 291.8 26.3 339 118-466 104-500 (1230)
80 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.5E-32 7.5E-37 308.1 28.7 301 131-459 74-406 (1283)
81 PRK05580 primosome assembly pr 100.0 1.4E-30 3.1E-35 287.0 35.7 316 124-465 144-557 (679)
82 PRK04914 ATP-dependent helicas 100.0 1.1E-29 2.3E-34 283.4 33.7 342 124-476 152-625 (956)
83 cd00268 DEADc DEAD-box helicas 100.0 3.8E-30 8.3E-35 245.0 24.3 202 104-310 1-202 (203)
84 KOG0947 Cytoplasmic exosomal R 100.0 1.7E-29 3.7E-34 266.5 30.6 327 119-467 293-735 (1248)
85 PRK13104 secA preprotein trans 100.0 1.7E-29 3.6E-34 274.3 31.1 325 120-459 79-589 (896)
86 COG1200 RecG RecG-like helicas 100.0 2.9E-29 6.2E-34 261.5 30.5 324 107-458 245-592 (677)
87 PRK09694 helicase Cas3; Provis 100.0 3.5E-29 7.6E-34 277.7 31.6 315 122-445 284-664 (878)
88 PRK12904 preprotein translocas 100.0 1.3E-28 2.7E-33 267.4 30.7 319 120-459 78-575 (830)
89 KOG0948 Nuclear exosomal RNA h 100.0 1.3E-29 2.8E-34 261.3 18.4 309 124-457 129-539 (1041)
90 PRK12899 secA preprotein trans 100.0 5.3E-28 1.1E-32 261.9 30.9 149 105-263 65-229 (970)
91 TIGR00595 priA primosomal prot 100.0 6.6E-28 1.4E-32 256.7 30.5 297 143-465 1-389 (505)
92 PRK12906 secA preprotein trans 100.0 2.8E-28 6.1E-33 263.6 26.9 320 120-459 77-555 (796)
93 COG1061 SSL2 DNA or RNA helica 100.0 1.7E-28 3.8E-33 258.1 24.5 293 124-443 36-376 (442)
94 KOG0951 RNA helicase BRR2, DEA 100.0 1.5E-28 3.1E-33 265.3 23.7 356 108-474 295-719 (1674)
95 COG4581 Superfamily II RNA hel 100.0 5.9E-28 1.3E-32 265.1 24.5 320 116-457 112-537 (1041)
96 PRK13107 preprotein translocas 99.9 4.2E-25 9E-30 239.4 34.8 320 120-459 79-593 (908)
97 COG1197 Mfd Transcription-repa 99.9 4.2E-25 9.2E-30 242.7 30.6 320 108-457 578-913 (1139)
98 PRK11448 hsdR type I restricti 99.9 2.2E-25 4.8E-30 254.4 29.6 319 123-453 412-812 (1123)
99 PF00270 DEAD: DEAD/DEAH box h 99.9 4.3E-26 9.3E-31 210.4 19.0 167 126-298 1-169 (169)
100 COG1643 HrpA HrpA-like helicas 99.9 1.3E-25 2.7E-30 245.6 25.7 308 126-458 52-388 (845)
101 KOG0922 DEAH-box RNA helicase 99.9 1.6E-25 3.4E-30 231.3 23.7 308 126-459 53-392 (674)
102 COG4098 comFA Superfamily II D 99.9 5.8E-24 1.3E-28 202.4 30.4 308 124-462 97-421 (441)
103 KOG0926 DEAH-box RNA helicase 99.9 2.3E-25 4.9E-30 231.4 21.5 308 130-456 262-703 (1172)
104 KOG0950 DNA polymerase theta/e 99.9 3.3E-25 7.1E-30 236.2 22.7 345 108-468 207-622 (1008)
105 KOG0923 mRNA splicing factor A 99.9 1.4E-24 3E-29 221.8 21.4 308 124-456 265-605 (902)
106 PLN03142 Probable chromatin-re 99.9 2.3E-23 4.9E-28 233.6 27.5 319 124-456 169-598 (1033)
107 KOG0924 mRNA splicing factor A 99.9 7.3E-23 1.6E-27 209.6 21.2 307 124-456 356-696 (1042)
108 COG1110 Reverse gyrase [DNA re 99.9 1.3E-21 2.7E-26 209.9 31.0 281 120-427 79-416 (1187)
109 COG1203 CRISPR-associated heli 99.9 5.1E-23 1.1E-27 229.4 21.4 335 125-465 196-558 (733)
110 PRK12900 secA preprotein trans 99.9 3.3E-22 7.1E-27 217.7 26.4 125 332-459 579-713 (1025)
111 KOG0920 ATP-dependent RNA heli 99.9 7.5E-22 1.6E-26 215.1 23.8 317 124-459 173-546 (924)
112 TIGR01407 dinG_rel DnaQ family 99.9 4.6E-21 9.9E-26 218.2 31.3 328 109-452 231-810 (850)
113 TIGR00631 uvrb excinuclease AB 99.9 2.9E-21 6.4E-26 210.6 26.8 130 334-465 425-561 (655)
114 PRK05298 excinuclease ABC subu 99.9 1.4E-19 3E-24 199.2 27.5 120 335-456 430-556 (652)
115 PRK12326 preprotein translocas 99.8 2.7E-18 5.9E-23 182.5 33.7 320 120-460 75-550 (764)
116 KOG0925 mRNA splicing factor A 99.8 2E-19 4.4E-24 178.4 20.6 326 101-457 24-387 (699)
117 KOG0953 Mitochondrial RNA heli 99.8 2.5E-19 5.4E-24 180.6 19.7 282 139-467 191-486 (700)
118 KOG0385 Chromatin remodeling c 99.8 5.8E-19 1.3E-23 183.9 22.7 320 124-457 167-599 (971)
119 smart00487 DEXDc DEAD-like hel 99.8 5.6E-19 1.2E-23 166.8 20.5 187 119-313 3-191 (201)
120 COG1198 PriA Primosomal protei 99.8 2.4E-18 5.2E-23 186.1 27.6 321 123-467 197-613 (730)
121 PF06862 DUF1253: Protein of u 99.8 5.6E-18 1.2E-22 173.2 28.7 295 170-465 33-423 (442)
122 PRK07246 bifunctional ATP-depe 99.8 4.7E-18 1E-22 190.9 30.2 312 120-452 242-779 (820)
123 KOG0387 Transcription-coupled 99.8 2.7E-18 5.9E-23 179.8 25.5 337 107-465 196-669 (923)
124 PRK13103 secA preprotein trans 99.8 3.9E-18 8.5E-23 185.6 27.0 319 120-459 79-593 (913)
125 KOG0949 Predicted helicase, DE 99.8 1.5E-18 3.3E-23 184.6 22.2 161 124-294 511-674 (1330)
126 KOG2340 Uncharacterized conser 99.8 2.4E-18 5.1E-23 172.5 21.1 342 123-465 215-676 (698)
127 TIGR00348 hsdR type I site-spe 99.8 7E-18 1.5E-22 186.4 26.8 302 125-443 239-634 (667)
128 COG4096 HsdR Type I site-speci 99.8 3.4E-18 7.5E-23 181.3 21.7 303 123-448 164-530 (875)
129 COG0556 UvrB Helicase subunit 99.8 9.3E-18 2E-22 169.1 22.8 119 336-456 431-556 (663)
130 PRK12903 secA preprotein trans 99.8 1E-16 2.2E-21 172.9 29.1 319 120-459 75-541 (925)
131 CHL00122 secA preprotein trans 99.8 2.5E-16 5.4E-21 170.9 28.1 132 119-262 72-209 (870)
132 KOG1123 RNA polymerase II tran 99.8 6.1E-18 1.3E-22 168.4 13.2 324 123-472 301-674 (776)
133 KOG4150 Predicted ATP-dependen 99.8 3.2E-17 7E-22 165.4 18.3 335 116-463 278-648 (1034)
134 cd00079 HELICc Helicase superf 99.8 1.8E-17 4E-22 145.6 14.4 126 326-453 4-131 (131)
135 KOG0390 DNA repair protein, SN 99.7 1.7E-15 3.6E-20 163.2 28.6 337 124-470 238-723 (776)
136 KOG0384 Chromodomain-helicase 99.7 9.6E-17 2.1E-21 175.2 19.0 320 123-457 369-811 (1373)
137 PF00271 Helicase_C: Helicase 99.7 8.1E-18 1.7E-22 133.5 7.9 78 367-444 1-78 (78)
138 PRK12902 secA preprotein trans 99.7 1.8E-14 3.9E-19 156.3 35.4 131 120-262 82-218 (939)
139 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.1E-14 2.5E-19 156.6 32.9 74 133-211 10-86 (636)
140 PRK08074 bifunctional ATP-depe 99.7 7E-15 1.5E-19 168.4 31.8 109 347-456 750-892 (928)
141 KOG1000 Chromatin remodeling p 99.7 2.5E-15 5.5E-20 149.9 24.2 315 124-456 198-601 (689)
142 KOG0392 SNF2 family DNA-depend 99.7 7.3E-16 1.6E-20 167.8 19.9 322 125-456 976-1453(1549)
143 KOG0389 SNF2 family DNA-depend 99.7 1.4E-15 3E-20 159.5 20.1 336 125-473 400-905 (941)
144 cd00046 DEXDc DEAD-like helica 99.7 2.2E-15 4.8E-20 133.7 17.0 144 140-291 1-144 (144)
145 KOG0951 RNA helicase BRR2, DEA 99.7 1.4E-14 3E-19 158.3 24.2 323 123-474 1142-1511(1674)
146 COG4889 Predicted helicase [Ge 99.6 1.3E-15 2.9E-20 160.5 10.0 328 103-443 141-572 (1518)
147 KOG0391 SNF2 family DNA-depend 99.6 1.6E-13 3.4E-18 148.5 22.7 123 335-457 1260-1387(1958)
148 COG1199 DinG Rad3-related DNA 99.6 2.2E-13 4.7E-18 152.5 25.1 111 339-453 470-614 (654)
149 PRK11747 dinG ATP-dependent DN 99.6 2.1E-12 4.6E-17 143.7 32.3 76 348-427 533-615 (697)
150 PF04851 ResIII: Type III rest 99.6 1.5E-14 3.3E-19 135.0 12.0 153 124-292 3-183 (184)
151 smart00490 HELICc helicase sup 99.6 6.4E-15 1.4E-19 117.8 8.0 81 364-444 2-82 (82)
152 TIGR02562 cas3_yersinia CRISPR 99.6 5.4E-13 1.2E-17 147.1 24.0 330 124-462 408-899 (1110)
153 PRK12901 secA preprotein trans 99.5 1E-12 2.2E-17 144.3 25.1 123 332-458 609-742 (1112)
154 TIGR00604 rad3 DNA repair heli 99.5 1.8E-11 4E-16 137.3 26.3 75 120-198 6-84 (705)
155 KOG1002 Nucleotide excision re 99.4 5.6E-11 1.2E-15 119.1 22.9 110 349-458 638-750 (791)
156 KOG0386 Chromatin remodeling c 99.4 5.7E-12 1.2E-16 136.0 14.2 119 334-453 709-832 (1157)
157 KOG4439 RNA polymerase II tran 99.4 2.9E-11 6.3E-16 125.9 17.9 102 349-450 746-850 (901)
158 KOG0388 SNF2 family DNA-depend 99.4 4.3E-11 9.4E-16 124.4 18.9 122 335-456 1028-1153(1185)
159 PRK14873 primosome assembly pr 99.3 1.6E-10 3.5E-15 126.5 23.9 137 145-300 166-312 (665)
160 PF13959 DUF4217: Domain of un 99.3 2.3E-12 4.9E-17 96.6 6.5 64 484-547 1-65 (65)
161 PF02399 Herpes_ori_bp: Origin 99.3 1.4E-10 3E-15 125.3 20.8 291 141-457 51-388 (824)
162 COG0553 HepA Superfamily II DN 99.2 4.6E-10 9.9E-15 130.6 18.3 111 335-445 692-809 (866)
163 PF07652 Flavi_DEAD: Flaviviru 99.2 3E-10 6.6E-15 97.7 12.2 136 138-295 3-140 (148)
164 KOG1015 Transcription regulato 99.2 1E-09 2.3E-14 117.5 17.6 118 335-453 1126-1271(1567)
165 COG0653 SecA Preprotein transl 99.1 1E-08 2.2E-13 111.8 20.8 320 125-458 81-546 (822)
166 smart00489 DEXDc3 DEAD-like he 99.1 1.4E-09 3E-14 108.5 13.2 76 120-197 5-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.1 1.4E-09 3E-14 108.5 13.2 76 120-197 5-84 (289)
168 PF00176 SNF2_N: SNF2 family N 99.0 1E-09 2.2E-14 110.8 11.1 146 138-293 24-174 (299)
169 PF07517 SecA_DEAD: SecA DEAD- 98.9 2.6E-08 5.6E-13 96.7 14.4 132 119-262 73-210 (266)
170 KOG0921 Dosage compensation co 98.9 1.5E-08 3.3E-13 108.5 12.9 306 135-457 389-774 (1282)
171 COG0610 Type I site-specific r 98.8 2.4E-06 5.1E-11 98.3 28.0 297 140-455 274-651 (962)
172 KOG0952 DNA/RNA helicase MER3/ 98.7 2.7E-09 5.7E-14 116.3 1.7 168 124-301 927-1102(1230)
173 KOG1016 Predicted DNA helicase 98.5 7.1E-06 1.5E-10 87.2 18.9 119 351-470 721-865 (1387)
174 COG3587 Restriction endonuclea 98.4 4.5E-05 9.7E-10 82.7 21.0 69 399-467 483-563 (985)
175 PRK15483 type III restriction- 98.4 4.5E-06 9.7E-11 93.6 13.7 144 140-293 60-240 (986)
176 TIGR00596 rad1 DNA repair prot 98.3 1.7E-05 3.7E-10 88.9 16.8 68 224-293 7-74 (814)
177 PF02562 PhoH: PhoH-like prote 98.3 5.4E-06 1.2E-10 77.4 10.7 141 122-288 2-153 (205)
178 PF13604 AAA_30: AAA domain; P 98.2 6.3E-06 1.4E-10 77.5 9.3 124 124-289 1-129 (196)
179 PF13086 AAA_11: AAA domain; P 98.2 6.6E-06 1.4E-10 79.6 9.8 72 124-196 1-75 (236)
180 PF13307 Helicase_C_2: Helicas 98.2 3.8E-06 8.2E-11 76.8 6.5 77 348-428 8-92 (167)
181 PRK10536 hypothetical protein; 97.9 7E-05 1.5E-09 71.9 9.6 145 120-286 55-208 (262)
182 PF13872 AAA_34: P-loop contai 97.9 0.00019 4.2E-09 70.1 12.3 175 105-298 24-227 (303)
183 PF12340 DUF3638: Protein of u 97.8 0.00011 2.3E-09 69.3 9.5 127 102-237 3-143 (229)
184 KOG1802 RNA helicase nonsense 97.8 7.9E-05 1.7E-09 78.4 9.3 76 116-197 402-477 (935)
185 KOG1803 DNA helicase [Replicat 97.8 5.1E-05 1.1E-09 79.5 7.7 65 124-195 185-250 (649)
186 KOG1001 Helicase-like transcri 97.7 0.00016 3.5E-09 79.5 10.6 102 350-451 540-643 (674)
187 PF09848 DUF2075: Uncharacteri 97.7 0.00011 2.4E-09 75.9 8.6 108 141-276 3-117 (352)
188 TIGR00376 DNA helicase, putati 97.7 0.00033 7.2E-09 77.6 12.3 67 123-196 156-223 (637)
189 TIGR01447 recD exodeoxyribonuc 97.7 0.00038 8.3E-09 76.1 12.4 142 126-288 147-293 (586)
190 PF13245 AAA_19: Part of AAA d 97.6 0.00021 4.7E-09 55.5 6.7 53 139-194 10-62 (76)
191 PRK10875 recD exonuclease V su 97.6 0.00053 1.2E-08 75.1 11.9 142 125-288 153-299 (615)
192 TIGR01448 recD_rel helicase, p 97.5 0.0013 2.8E-08 74.1 13.4 132 119-288 319-450 (720)
193 PF13401 AAA_22: AAA domain; P 97.5 0.00063 1.4E-08 59.2 8.7 19 139-157 4-22 (131)
194 KOG1132 Helicase of the DEAD s 97.4 0.00087 1.9E-08 73.3 10.2 79 349-428 561-656 (945)
195 PF00580 UvrD-helicase: UvrD/R 97.3 0.00065 1.4E-08 68.9 8.1 124 125-259 1-125 (315)
196 PRK13889 conjugal transfer rel 97.2 0.0027 5.8E-08 73.0 12.4 126 120-289 343-469 (988)
197 PRK12723 flagellar biosynthesi 97.2 0.0057 1.2E-07 63.3 13.2 131 139-301 174-308 (388)
198 TIGR02768 TraA_Ti Ti-type conj 97.2 0.005 1.1E-07 69.7 13.9 60 124-190 352-412 (744)
199 smart00492 HELICc3 helicase su 97.0 0.0034 7.5E-08 55.3 8.6 50 379-428 27-79 (141)
200 KOG1805 DNA replication helica 97.0 0.003 6.5E-08 69.9 9.6 135 108-263 657-810 (1100)
201 PF05970 PIF1: PIF1-like helic 97.0 0.0028 6E-08 65.7 8.8 59 125-190 2-66 (364)
202 COG1875 NYN ribonuclease and A 96.9 0.01 2.2E-07 59.2 11.3 64 119-186 223-288 (436)
203 PRK04296 thymidine kinase; Pro 96.9 0.0019 4E-08 60.4 5.9 109 140-290 3-114 (190)
204 PRK13826 Dtr system oriT relax 96.9 0.015 3.3E-07 67.4 14.3 139 108-290 366-505 (1102)
205 PRK14722 flhF flagellar biosyn 96.9 0.011 2.5E-07 60.6 11.9 128 138-300 136-267 (374)
206 smart00491 HELICc2 helicase su 96.8 0.0047 1E-07 54.5 7.8 41 387-427 32-79 (142)
207 PRK14974 cell division protein 96.7 0.023 4.9E-07 57.7 12.6 54 248-302 221-275 (336)
208 PF14617 CMS1: U3-containing 9 96.7 0.0038 8.2E-08 60.2 6.5 85 173-259 125-211 (252)
209 PRK11889 flhF flagellar biosyn 96.7 0.034 7.3E-07 57.0 13.4 128 140-302 242-374 (436)
210 PF13871 Helicase_C_4: Helicas 96.6 0.0042 9.1E-08 60.6 6.4 74 390-463 52-136 (278)
211 PF00448 SRP54: SRP54-type pro 96.6 0.019 4.1E-07 53.8 10.6 127 142-300 4-134 (196)
212 cd00009 AAA The AAA+ (ATPases 96.5 0.034 7.4E-07 48.7 11.4 17 139-155 19-35 (151)
213 PRK06526 transposase; Provisio 96.4 0.016 3.4E-07 56.7 9.1 25 134-158 93-117 (254)
214 cd01120 RecA-like_NTPases RecA 96.4 0.1 2.2E-06 46.8 13.6 38 142-186 2-39 (165)
215 PRK05703 flhF flagellar biosyn 96.3 0.081 1.7E-06 55.8 14.4 130 138-301 220-353 (424)
216 PRK08181 transposase; Validate 96.3 0.034 7.3E-07 54.7 10.7 108 136-293 103-211 (269)
217 PRK07952 DNA replication prote 96.3 0.047 1E-06 52.9 11.4 48 248-295 161-209 (244)
218 cd01124 KaiC KaiC is a circadi 96.3 0.047 1E-06 50.7 11.1 48 142-197 2-49 (187)
219 smart00382 AAA ATPases associa 96.2 0.011 2.5E-07 51.3 6.5 18 139-156 2-19 (148)
220 KOG1131 RNA polymerase II tran 96.2 0.023 4.9E-07 58.9 9.0 75 120-197 12-90 (755)
221 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.034 7.3E-07 53.4 10.1 42 250-292 91-133 (226)
222 PF00308 Bac_DnaA: Bacterial d 96.2 0.034 7.4E-07 53.1 9.8 48 248-295 96-144 (219)
223 PHA02533 17 large terminase pr 96.1 0.045 9.8E-07 59.3 11.3 148 124-290 59-209 (534)
224 TIGR02760 TraI_TIGR conjugativ 96.1 0.32 6.8E-06 61.0 19.8 209 124-371 429-648 (1960)
225 PRK06893 DNA replication initi 96.1 0.02 4.4E-07 55.2 7.8 47 248-294 90-137 (229)
226 KOG0298 DEAD box-containing he 96.1 0.031 6.7E-07 63.9 9.9 157 138-300 373-559 (1394)
227 TIGR01075 uvrD DNA helicase II 96.0 0.02 4.3E-07 65.1 8.7 71 123-198 3-73 (715)
228 PRK11773 uvrD DNA-dependent he 96.0 0.02 4.4E-07 65.0 8.3 71 123-198 8-78 (721)
229 cd01122 GP4d_helicase GP4d_hel 95.9 0.055 1.2E-06 53.6 10.4 43 133-181 24-66 (271)
230 PRK08727 hypothetical protein; 95.9 0.04 8.6E-07 53.3 9.0 46 248-293 92-138 (233)
231 PRK06921 hypothetical protein; 95.9 0.087 1.9E-06 51.9 11.4 45 138-189 116-160 (266)
232 COG3421 Uncharacterized protei 95.8 0.014 3.1E-07 61.5 5.4 145 144-294 2-168 (812)
233 PRK14712 conjugal transfer nic 95.8 0.05 1.1E-06 65.4 10.6 62 124-190 835-900 (1623)
234 COG1419 FlhF Flagellar GTP-bin 95.7 0.21 4.6E-06 51.2 13.6 130 138-301 202-334 (407)
235 COG1435 Tdk Thymidine kinase [ 95.7 0.088 1.9E-06 48.2 9.7 105 140-277 5-109 (201)
236 PRK14087 dnaA chromosomal repl 95.7 0.082 1.8E-06 56.3 11.3 111 140-295 142-253 (450)
237 TIGR02881 spore_V_K stage V sp 95.7 0.065 1.4E-06 52.8 9.9 21 138-158 41-61 (261)
238 PRK00149 dnaA chromosomal repl 95.7 0.072 1.6E-06 57.0 10.9 47 249-295 211-258 (450)
239 TIGR02785 addA_Gpos recombinat 95.7 0.061 1.3E-06 64.7 11.0 123 125-260 2-126 (1232)
240 PF05127 Helicase_RecD: Helica 95.6 0.0046 1E-07 56.3 1.2 125 143-293 1-125 (177)
241 KOG0989 Replication factor C, 95.6 0.03 6.6E-07 54.6 6.5 49 245-295 125-173 (346)
242 PRK05642 DNA replication initi 95.6 0.071 1.5E-06 51.6 9.2 44 249-293 97-141 (234)
243 PRK12726 flagellar biosynthesi 95.5 0.25 5.4E-06 50.6 13.1 22 138-159 205-226 (407)
244 PRK08084 DNA replication initi 95.5 0.061 1.3E-06 52.1 8.5 44 250-293 98-142 (235)
245 PF03354 Terminase_1: Phage Te 95.5 0.059 1.3E-06 58.1 9.2 150 127-288 1-160 (477)
246 PRK13709 conjugal transfer nic 95.5 0.095 2.1E-06 63.9 11.5 64 124-190 967-1032(1747)
247 CHL00181 cbbX CbbX; Provisiona 95.4 0.22 4.7E-06 49.8 12.2 21 138-158 58-78 (287)
248 KOG0383 Predicted helicase [Ge 95.4 0.0094 2E-07 65.2 2.6 76 336-412 616-696 (696)
249 PRK11054 helD DNA helicase IV; 95.3 0.062 1.4E-06 60.1 9.0 74 120-198 192-265 (684)
250 PRK06835 DNA replication prote 95.3 0.082 1.8E-06 53.7 8.9 44 138-189 182-225 (329)
251 TIGR00362 DnaA chromosomal rep 95.3 0.11 2.5E-06 54.7 10.3 44 249-293 199-243 (405)
252 COG1444 Predicted P-loop ATPas 95.3 0.17 3.7E-06 56.1 11.7 153 114-293 204-358 (758)
253 PTZ00112 origin recognition co 95.2 0.18 4E-06 56.6 11.8 42 248-290 868-909 (1164)
254 PRK10919 ATP-dependent DNA hel 95.2 0.046 9.9E-07 61.5 7.6 71 124-199 2-72 (672)
255 PF05621 TniB: Bacterial TniB 95.2 0.18 3.9E-06 49.8 10.6 53 138-195 60-117 (302)
256 TIGR02880 cbbX_cfxQ probable R 95.2 0.27 5.8E-06 49.1 12.0 20 138-157 57-76 (284)
257 TIGR00064 ftsY signal recognit 95.1 0.42 9.1E-06 47.3 13.2 131 139-300 72-211 (272)
258 PHA02544 44 clamp loader, smal 95.1 0.16 3.5E-06 51.5 10.6 40 249-290 100-139 (316)
259 PRK06645 DNA polymerase III su 95.0 0.17 3.8E-06 54.4 10.9 20 140-159 44-63 (507)
260 PRK14956 DNA polymerase III su 95.0 0.12 2.6E-06 54.7 9.5 18 141-158 42-59 (484)
261 PRK06731 flhF flagellar biosyn 95.0 0.49 1.1E-05 46.6 13.1 129 138-302 74-208 (270)
262 COG3973 Superfamily I DNA and 95.0 0.1 2.2E-06 55.5 8.6 89 110-199 191-285 (747)
263 PRK12422 chromosomal replicati 95.0 0.15 3.3E-06 54.2 10.2 50 248-297 201-251 (445)
264 PRK12724 flagellar biosynthesi 95.0 0.41 9E-06 49.8 12.9 127 139-301 223-355 (432)
265 PRK12377 putative replication 95.0 0.21 4.4E-06 48.6 10.2 45 139-191 101-145 (248)
266 PRK05986 cob(I)alamin adenolsy 94.9 0.51 1.1E-05 43.6 12.1 147 137-301 20-168 (191)
267 PRK06995 flhF flagellar biosyn 94.9 0.35 7.6E-06 51.5 12.5 21 138-158 255-275 (484)
268 TIGR01074 rep ATP-dependent DN 94.9 0.13 2.8E-06 58.2 10.0 70 125-199 2-71 (664)
269 PRK14964 DNA polymerase III su 94.9 0.72 1.6E-05 49.4 14.9 47 101-159 9-55 (491)
270 PF00004 AAA: ATPase family as 94.9 0.053 1.1E-06 46.9 5.5 15 142-156 1-15 (132)
271 PF05876 Terminase_GpA: Phage 94.8 0.056 1.2E-06 59.1 6.6 127 124-263 16-148 (557)
272 TIGR01425 SRP54_euk signal rec 94.8 0.64 1.4E-05 48.8 13.9 131 141-302 102-235 (429)
273 TIGR01547 phage_term_2 phage t 94.8 0.15 3.3E-06 53.6 9.6 143 142-301 4-150 (396)
274 PF05872 DUF853: Bacterial pro 94.8 0.087 1.9E-06 54.5 7.3 45 248-292 253-301 (502)
275 TIGR02760 TraI_TIGR conjugativ 94.7 0.15 3.3E-06 63.7 10.8 62 123-190 1018-1084(1960)
276 KOG0742 AAA+-type ATPase [Post 94.7 0.082 1.8E-06 53.5 6.7 104 140-294 385-496 (630)
277 PRK08903 DnaA regulatory inact 94.7 0.17 3.7E-06 48.6 9.0 44 249-293 90-133 (227)
278 PRK13894 conjugal transfer ATP 94.7 0.083 1.8E-06 53.5 6.9 67 113-186 123-190 (319)
279 PRK09183 transposase/IS protei 94.6 0.33 7.2E-06 47.6 11.0 24 135-158 98-121 (259)
280 PRK00771 signal recognition pa 94.6 0.67 1.5E-05 49.0 13.8 50 251-301 177-227 (437)
281 PRK10917 ATP-dependent DNA hel 94.5 0.17 3.7E-06 57.1 9.8 91 333-423 293-389 (681)
282 PRK07994 DNA polymerase III su 94.5 0.3 6.4E-06 54.0 11.2 30 248-278 118-147 (647)
283 PRK11331 5-methylcytosine-spec 94.5 0.08 1.7E-06 55.4 6.5 33 125-157 180-212 (459)
284 PHA03333 putative ATPase subun 94.5 0.91 2E-05 49.9 14.4 150 125-292 170-333 (752)
285 PRK05973 replicative DNA helic 94.4 0.42 9.2E-06 46.0 10.9 84 106-197 22-114 (237)
286 PRK05580 primosome assembly pr 94.4 0.3 6.5E-06 55.0 11.4 76 349-425 190-266 (679)
287 PRK14088 dnaA chromosomal repl 94.4 0.3 6.5E-06 52.0 10.8 50 249-298 194-244 (440)
288 PRK07003 DNA polymerase III su 94.4 0.39 8.3E-06 53.5 11.6 44 248-294 118-161 (830)
289 PHA03368 DNA packaging termina 94.4 0.39 8.6E-06 52.3 11.4 136 139-294 254-393 (738)
290 PRK14086 dnaA chromosomal repl 94.4 0.57 1.2E-05 51.3 12.8 48 248-295 376-424 (617)
291 PRK14958 DNA polymerase III su 94.3 0.47 1E-05 51.4 12.0 37 248-286 118-154 (509)
292 PRK08533 flagellar accessory p 94.3 0.61 1.3E-05 44.9 11.7 54 136-197 21-74 (230)
293 PRK13833 conjugal transfer pro 94.2 0.13 2.8E-06 52.0 7.2 65 115-186 121-186 (323)
294 PRK14721 flhF flagellar biosyn 94.2 0.75 1.6E-05 48.2 13.0 131 138-302 190-323 (420)
295 PRK08769 DNA polymerase III su 94.2 0.46 9.9E-06 48.0 11.0 44 122-166 2-52 (319)
296 PRK12323 DNA polymerase III su 94.1 0.36 7.7E-06 52.9 10.6 45 248-295 123-167 (700)
297 PRK05563 DNA polymerase III su 94.1 0.79 1.7E-05 50.3 13.6 47 101-159 12-58 (559)
298 PRK08116 hypothetical protein; 94.1 0.33 7.1E-06 48.0 9.6 47 248-295 177-225 (268)
299 cd00561 CobA_CobO_BtuR ATP:cor 94.0 0.84 1.8E-05 41.0 11.1 54 247-301 93-148 (159)
300 PRK07764 DNA polymerase III su 93.9 0.38 8.2E-06 55.0 10.9 43 248-293 119-161 (824)
301 PRK04195 replication factor C 93.9 0.24 5.1E-06 53.6 9.0 47 101-156 10-56 (482)
302 COG1474 CDC6 Cdc6-related prot 93.9 0.39 8.5E-06 49.6 10.1 41 249-290 123-163 (366)
303 PRK11823 DNA repair protein Ra 93.9 0.32 7E-06 51.8 9.8 53 137-197 78-130 (446)
304 PTZ00293 thymidine kinase; Pro 93.9 0.32 7E-06 45.7 8.6 38 139-183 4-41 (211)
305 TIGR03881 KaiC_arch_4 KaiC dom 93.9 0.65 1.4E-05 44.6 11.2 52 137-196 18-69 (229)
306 PRK14960 DNA polymerase III su 93.9 0.57 1.2E-05 51.5 11.5 43 248-293 117-159 (702)
307 TIGR00595 priA primosomal prot 93.8 0.3 6.4E-06 52.9 9.5 75 349-424 25-100 (505)
308 TIGR03877 thermo_KaiC_1 KaiC d 93.8 0.65 1.4E-05 45.0 11.0 53 138-198 20-72 (237)
309 PRK14873 primosome assembly pr 93.7 0.44 9.6E-06 53.1 10.8 91 334-425 171-265 (665)
310 PF06745 KaiC: KaiC; InterPro 93.7 0.24 5.3E-06 47.5 7.8 134 137-290 17-159 (226)
311 PLN03025 replication factor C 93.6 0.66 1.4E-05 47.2 11.2 40 249-291 99-138 (319)
312 PRK00411 cdc6 cell division co 93.6 0.42 9E-06 50.2 10.1 17 140-156 56-72 (394)
313 KOG1133 Helicase of the DEAD s 93.6 2.1 4.5E-05 46.6 14.8 79 347-428 627-720 (821)
314 COG1110 Reverse gyrase [DNA re 93.6 0.22 4.9E-06 56.2 8.0 73 337-409 113-191 (1187)
315 PRK14723 flhF flagellar biosyn 93.6 0.33 7.2E-06 54.4 9.4 38 380-417 459-500 (767)
316 TIGR01073 pcrA ATP-dependent D 93.6 0.21 4.5E-06 57.0 8.2 72 123-199 3-74 (726)
317 COG0552 FtsY Signal recognitio 93.5 1.7 3.6E-05 43.5 13.1 131 141-302 141-280 (340)
318 PRK12727 flagellar biosynthesi 93.4 0.56 1.2E-05 50.3 10.4 129 136-300 347-479 (559)
319 PF13173 AAA_14: AAA domain 93.3 1.2 2.7E-05 38.3 10.9 36 249-288 61-96 (128)
320 COG0470 HolB ATPase involved i 93.3 0.45 9.8E-06 48.3 9.6 44 248-294 108-151 (325)
321 TIGR00708 cobA cob(I)alamin ad 93.3 1.4 2.9E-05 40.2 11.3 53 248-301 96-150 (173)
322 PRK05707 DNA polymerase III su 93.3 0.37 8E-06 49.1 8.6 41 125-166 4-48 (328)
323 PRK09111 DNA polymerase III su 93.3 1.2 2.7E-05 49.0 13.3 45 101-160 20-67 (598)
324 PRK14969 DNA polymerase III su 93.3 0.65 1.4E-05 50.6 11.0 39 248-288 118-156 (527)
325 PRK14961 DNA polymerase III su 93.3 0.69 1.5E-05 48.0 10.8 17 142-158 41-57 (363)
326 PRK14952 DNA polymerase III su 93.3 0.57 1.2E-05 51.4 10.5 44 248-294 117-160 (584)
327 PRK14949 DNA polymerase III su 93.2 0.66 1.4E-05 52.7 11.0 44 248-294 118-161 (944)
328 TIGR00643 recG ATP-dependent D 93.2 0.37 8E-06 54.0 9.2 90 334-423 268-363 (630)
329 cd00984 DnaB_C DnaB helicase C 93.1 0.24 5.2E-06 48.1 6.9 48 136-189 10-60 (242)
330 PRK14962 DNA polymerase III su 93.1 0.63 1.4E-05 49.8 10.4 17 142-158 39-55 (472)
331 PRK10867 signal recognition pa 93.1 2.2 4.7E-05 45.1 14.1 42 141-188 102-145 (433)
332 TIGR03499 FlhF flagellar biosy 93.1 0.27 5.9E-06 48.9 7.2 20 138-157 193-212 (282)
333 COG2805 PilT Tfp pilus assembl 93.0 0.15 3.2E-06 49.9 4.8 46 101-166 105-151 (353)
334 cd01121 Sms Sms (bacterial rad 92.9 0.7 1.5E-05 47.9 10.1 53 137-197 80-132 (372)
335 PRK14965 DNA polymerase III su 92.9 1.1 2.5E-05 49.3 12.3 45 247-294 117-161 (576)
336 TIGR00959 ffh signal recogniti 92.9 2.4 5.2E-05 44.7 14.1 18 141-158 101-118 (428)
337 PRK08691 DNA polymerase III su 92.8 0.85 1.8E-05 50.6 11.0 42 248-292 118-159 (709)
338 PF03969 AFG1_ATPase: AFG1-lik 92.7 1.2 2.6E-05 46.0 11.3 112 138-295 61-172 (362)
339 KOG0739 AAA+-type ATPase [Post 92.5 4.8 0.0001 39.6 14.1 140 101-297 129-283 (439)
340 PRK10416 signal recognition pa 92.4 2.6 5.6E-05 42.7 13.2 53 248-300 195-253 (318)
341 TIGR03015 pepcterm_ATPase puta 92.4 2.7 5.7E-05 41.4 13.3 34 124-157 23-61 (269)
342 PRK13342 recombination factor 92.4 0.93 2E-05 47.9 10.5 38 249-292 92-129 (413)
343 COG4962 CpaF Flp pilus assembl 92.4 0.14 3E-06 51.2 3.9 59 121-187 154-213 (355)
344 PF05729 NACHT: NACHT domain 92.4 0.96 2.1E-05 40.6 9.3 46 141-188 2-47 (166)
345 TIGR02782 TrbB_P P-type conjug 92.3 0.41 8.9E-06 48.1 7.3 68 113-187 107-175 (299)
346 PRK14951 DNA polymerase III su 92.2 0.92 2E-05 50.1 10.4 18 142-159 41-58 (618)
347 KOG0991 Replication factor C, 92.2 0.47 1E-05 44.7 6.8 41 248-290 112-152 (333)
348 TIGR00580 mfd transcription-re 92.1 0.64 1.4E-05 54.0 9.4 76 348-423 499-579 (926)
349 KOG0701 dsRNA-specific nucleas 92.1 0.094 2E-06 62.6 2.7 95 350-444 293-399 (1606)
350 PRK12402 replication factor C 92.0 0.83 1.8E-05 46.7 9.4 40 248-290 124-163 (337)
351 PRK08939 primosomal protein Dn 92.0 1.1 2.3E-05 45.2 9.9 20 138-157 155-174 (306)
352 COG2256 MGS1 ATPase related to 92.0 0.94 2E-05 46.3 9.2 36 251-292 106-141 (436)
353 TIGR03600 phage_DnaB phage rep 91.9 1.6 3.4E-05 46.3 11.6 121 132-262 187-318 (421)
354 COG1198 PriA Primosomal protei 91.9 0.67 1.4E-05 51.8 8.9 92 331-423 225-319 (730)
355 COG2109 BtuR ATP:corrinoid ade 91.9 1.2 2.5E-05 40.7 8.8 52 249-301 122-175 (198)
356 PRK14955 DNA polymerase III su 91.8 1.4 3.1E-05 46.3 11.0 19 141-159 40-58 (397)
357 PRK14963 DNA polymerase III su 91.8 1.3 2.9E-05 47.8 10.9 17 142-158 39-55 (504)
358 cd01126 TraG_VirD4 The TraG/Tr 91.8 0.16 3.5E-06 53.2 3.8 45 141-194 1-45 (384)
359 PRK07940 DNA polymerase III su 91.7 0.51 1.1E-05 49.2 7.4 45 248-295 116-160 (394)
360 COG3972 Superfamily I DNA and 91.7 0.78 1.7E-05 47.9 8.3 146 113-268 152-313 (660)
361 TIGR03878 thermo_KaiC_2 KaiC d 91.7 1.6 3.5E-05 42.8 10.6 38 137-181 34-71 (259)
362 PF05496 RuvB_N: Holliday junc 91.7 0.32 7E-06 45.9 5.3 17 141-157 52-68 (233)
363 TIGR03689 pup_AAA proteasome A 91.6 1.4 3E-05 47.5 10.6 53 101-156 178-233 (512)
364 PF02572 CobA_CobO_BtuR: ATP:c 91.6 2.1 4.6E-05 38.9 10.3 139 142-301 6-149 (172)
365 PF03796 DnaB_C: DnaB-like hel 91.6 0.86 1.9E-05 44.8 8.6 115 136-263 16-144 (259)
366 PHA03372 DNA packaging termina 91.6 1.2 2.7E-05 48.0 10.0 133 139-293 202-339 (668)
367 PRK14950 DNA polymerase III su 91.5 1.5 3.3E-05 48.5 11.3 18 141-158 40-57 (585)
368 PRK08451 DNA polymerase III su 91.5 1.8 3.8E-05 47.0 11.4 40 247-288 115-154 (535)
369 PRK13851 type IV secretion sys 91.5 0.21 4.6E-06 51.0 4.2 44 136-187 159-202 (344)
370 TIGR02928 orc1/cdc6 family rep 91.5 1.4 3E-05 45.7 10.6 17 140-156 41-57 (365)
371 KOG1513 Nuclear helicase MOP-3 91.5 0.14 3.1E-06 55.8 3.0 64 393-456 851-922 (1300)
372 PF01695 IstB_IS21: IstB-like 91.5 0.22 4.7E-06 45.9 4.0 47 135-189 43-89 (178)
373 PRK06904 replicative DNA helic 91.5 2.9 6.2E-05 44.9 13.0 118 136-263 218-348 (472)
374 PRK11034 clpA ATP-dependent Cl 91.5 1.3 2.8E-05 50.3 10.8 19 139-157 207-225 (758)
375 COG2804 PulE Type II secretory 91.4 0.21 4.6E-06 52.5 4.2 38 126-164 243-282 (500)
376 PF13177 DNA_pol3_delta2: DNA 91.4 2 4.2E-05 38.9 10.1 42 248-291 101-142 (162)
377 PRK14954 DNA polymerase III su 91.3 2.3 5E-05 47.1 12.2 19 141-159 40-58 (620)
378 PRK14957 DNA polymerase III su 91.2 1.5 3.3E-05 47.6 10.7 39 248-288 118-156 (546)
379 PRK13341 recombination factor 91.2 1.5 3.2E-05 49.6 10.7 41 249-295 109-149 (725)
380 PRK05896 DNA polymerase III su 91.1 2.3 5.1E-05 46.6 11.9 47 101-159 12-58 (605)
381 PRK13900 type IV secretion sys 91.1 0.52 1.1E-05 48.1 6.6 44 136-187 157-200 (332)
382 TIGR02655 circ_KaiC circadian 91.1 1.5 3.2E-05 47.4 10.4 52 138-197 262-313 (484)
383 PF01637 Arch_ATPase: Archaeal 91.0 0.39 8.5E-06 45.9 5.5 57 231-292 105-166 (234)
384 PRK00440 rfc replication facto 91.0 2 4.3E-05 43.5 10.9 38 249-288 102-139 (319)
385 PRK14959 DNA polymerase III su 90.9 2.2 4.9E-05 46.9 11.5 20 141-160 40-59 (624)
386 COG1219 ClpX ATP-dependent pro 90.9 0.17 3.7E-06 49.8 2.6 21 137-157 95-115 (408)
387 PF02534 T4SS-DNA_transf: Type 90.9 0.23 5.1E-06 53.5 4.1 47 140-195 45-91 (469)
388 KOG0732 AAA+-type ATPase conta 90.9 0.68 1.5E-05 53.2 7.7 57 100-156 260-316 (1080)
389 PRK14948 DNA polymerase III su 90.8 2 4.4E-05 47.7 11.3 19 140-158 39-57 (620)
390 PHA00012 I assembly protein 90.8 2.3 5.1E-05 42.5 10.4 53 247-300 79-136 (361)
391 KOG0733 Nuclear AAA ATPase (VC 90.7 2.1 4.6E-05 46.1 10.6 56 98-156 504-562 (802)
392 cd03115 SRP The signal recogni 90.7 10 0.00022 34.4 14.4 52 248-300 81-133 (173)
393 KOG0738 AAA+-type ATPase [Post 90.6 0.48 1E-05 48.0 5.6 55 101-155 182-261 (491)
394 PRK03992 proteasome-activating 90.6 1 2.2E-05 47.1 8.5 18 139-156 165-182 (389)
395 PRK09112 DNA polymerase III su 90.6 1.3 2.8E-05 45.6 9.0 39 248-288 140-178 (351)
396 PF03237 Terminase_6: Terminas 90.6 2.6 5.6E-05 43.5 11.6 143 143-304 1-152 (384)
397 PRK06964 DNA polymerase III su 90.5 1.8 3.9E-05 44.3 9.8 40 126-166 3-47 (342)
398 PRK07471 DNA polymerase III su 90.4 1.8 3.9E-05 44.8 9.9 25 141-166 43-67 (365)
399 PF05707 Zot: Zonular occluden 90.4 0.47 1E-05 44.3 5.2 51 249-300 79-134 (193)
400 KOG0741 AAA+-type ATPase [Post 90.4 3.7 8E-05 43.6 11.8 69 106-183 493-573 (744)
401 PRK06067 flagellar accessory p 90.3 3.9 8.5E-05 39.4 11.8 52 138-197 24-75 (234)
402 COG4626 Phage terminase-like p 90.2 3.7 8E-05 44.0 12.0 147 124-289 61-223 (546)
403 PF03668 ATP_bind_2: P-loop AT 90.2 3.6 7.9E-05 40.4 11.1 27 358-384 256-282 (284)
404 PRK13897 type IV secretion sys 90.2 0.41 8.8E-06 52.7 5.1 56 140-208 159-214 (606)
405 COG0466 Lon ATP-dependent Lon 90.0 1.1 2.4E-05 49.2 8.0 97 138-277 349-445 (782)
406 KOG0729 26S proteasome regulat 90.0 13 0.00028 36.0 14.1 18 139-156 211-228 (435)
407 PF06733 DEAD_2: DEAD_2; Inte 89.9 0.19 4E-06 46.2 2.0 44 219-263 114-159 (174)
408 PRK08840 replicative DNA helic 89.9 4.4 9.6E-05 43.4 12.6 122 131-262 209-342 (464)
409 PRK07004 replicative DNA helic 89.7 2.6 5.7E-05 45.1 10.8 117 136-262 210-337 (460)
410 PRK10689 transcription-repair 89.7 1.3 2.8E-05 52.8 9.1 76 348-423 648-728 (1147)
411 TIGR01243 CDC48 AAA family ATP 89.6 2.5 5.3E-05 48.4 11.2 54 100-156 173-229 (733)
412 COG1200 RecG RecG-like helicas 89.5 1.8 3.8E-05 47.4 9.1 92 332-423 293-390 (677)
413 PRK13764 ATPase; Provisional 89.5 0.8 1.7E-05 50.2 6.7 26 138-164 256-281 (602)
414 COG2812 DnaX DNA polymerase II 89.3 0.88 1.9E-05 48.7 6.7 40 247-290 117-156 (515)
415 TIGR02525 plasmid_TraJ plasmid 89.2 1.1 2.4E-05 46.4 7.2 26 139-165 149-174 (372)
416 COG2909 MalT ATP-dependent tra 88.9 1.3 2.9E-05 49.4 7.8 42 251-293 131-172 (894)
417 PRK14953 DNA polymerase III su 88.9 2.4 5.3E-05 45.6 9.8 17 142-158 41-57 (486)
418 PHA00729 NTP-binding motif con 88.9 3 6.5E-05 39.8 9.2 74 225-300 59-137 (226)
419 KOG0058 Peptide exporter, ABC 88.8 2.5 5.3E-05 46.6 9.6 143 136-289 491-660 (716)
420 cd01130 VirB11-like_ATPase Typ 88.7 0.47 1E-05 44.1 3.8 32 125-156 10-42 (186)
421 COG1484 DnaC DNA replication p 88.7 0.5 1.1E-05 46.2 4.1 49 138-194 104-152 (254)
422 KOG1133 Helicase of the DEAD s 88.5 0.51 1.1E-05 51.1 4.2 41 124-164 15-59 (821)
423 COG0513 SrmB Superfamily II DN 88.4 2 4.2E-05 46.8 8.8 68 352-423 102-180 (513)
424 PF12846 AAA_10: AAA-like doma 88.2 0.73 1.6E-05 46.1 5.1 43 139-188 1-43 (304)
425 TIGR01243 CDC48 AAA family ATP 88.2 1.9 4.1E-05 49.3 9.0 53 101-156 449-504 (733)
426 PRK08506 replicative DNA helic 88.1 4.8 0.0001 43.3 11.5 116 136-262 189-315 (472)
427 PRK04841 transcriptional regul 88.0 5 0.00011 47.2 12.7 42 251-293 123-164 (903)
428 TIGR00665 DnaB replicative DNA 88.0 5.5 0.00012 42.4 11.9 116 136-262 192-318 (434)
429 PRK06647 DNA polymerase III su 87.9 4 8.7E-05 44.8 10.9 18 141-158 40-57 (563)
430 cd01127 TrwB Bacterial conjuga 87.9 0.67 1.5E-05 48.9 4.8 49 133-188 36-84 (410)
431 TIGR00767 rho transcription te 87.9 0.82 1.8E-05 47.3 5.2 20 136-155 165-184 (415)
432 PRK10436 hypothetical protein; 87.9 0.83 1.8E-05 48.7 5.4 45 116-164 196-242 (462)
433 COG5008 PilU Tfp pilus assembl 87.9 0.5 1.1E-05 45.4 3.3 14 142-155 130-143 (375)
434 PF01443 Viral_helicase1: Vira 87.8 0.34 7.4E-06 46.6 2.3 23 403-425 184-206 (234)
435 TIGR02524 dot_icm_DotB Dot/Icm 87.8 0.49 1.1E-05 48.8 3.5 18 138-155 133-150 (358)
436 PRK07133 DNA polymerase III su 87.8 2.4 5.1E-05 47.5 9.0 18 142-159 43-60 (725)
437 PRK07414 cob(I)yrinic acid a,c 87.8 2.5 5.5E-05 38.5 7.7 52 248-300 114-167 (178)
438 PRK08006 replicative DNA helic 87.5 9.1 0.0002 41.1 13.0 118 135-262 220-349 (471)
439 KOG2004 Mitochondrial ATP-depe 87.5 4.6 9.9E-05 44.5 10.5 96 124-263 415-519 (906)
440 PRK14971 DNA polymerase III su 87.5 5.7 0.00012 44.2 11.8 43 247-292 119-161 (614)
441 PRK13850 type IV secretion sys 87.5 0.8 1.7E-05 51.1 5.2 47 140-195 140-186 (670)
442 PF10412 TrwB_AAD_bind: Type I 87.4 0.9 1.9E-05 47.5 5.3 50 133-189 9-58 (386)
443 TIGR00416 sms DNA repair prote 87.3 2.7 5.8E-05 44.9 8.9 53 137-197 92-144 (454)
444 TIGR01241 FtsH_fam ATP-depende 87.3 3.9 8.4E-05 44.4 10.3 53 101-156 51-105 (495)
445 cd00544 CobU Adenosylcobinamid 87.3 6.2 0.00013 35.9 10.1 45 142-196 2-46 (169)
446 PRK09435 membrane ATPase/prote 87.3 18 0.00038 36.9 14.3 52 251-302 197-255 (332)
447 CHL00176 ftsH cell division pr 87.1 8.3 0.00018 43.0 12.8 18 139-156 216-233 (638)
448 TIGR03880 KaiC_arch_3 KaiC dom 87.1 4.6 9.9E-05 38.6 9.7 52 138-197 15-66 (224)
449 COG1132 MdlB ABC-type multidru 87.1 1.4 3.1E-05 48.7 7.0 41 247-288 481-521 (567)
450 TIGR02639 ClpA ATP-dependent C 86.8 4.8 0.0001 46.0 11.1 19 139-157 203-221 (731)
451 PRK14701 reverse gyrase; Provi 86.8 2.2 4.7E-05 52.6 8.7 61 348-408 121-187 (1638)
452 PF13555 AAA_29: P-loop contai 86.8 0.2 4.4E-06 36.9 0.1 25 132-156 16-40 (62)
453 cd01129 PulE-GspE PulE/GspE Th 86.8 1.3 2.8E-05 43.6 5.7 38 116-156 58-97 (264)
454 TIGR02868 CydC thiol reductant 86.7 2.2 4.7E-05 46.8 8.1 20 136-155 358-377 (529)
455 PRK00080 ruvB Holliday junctio 86.6 1.5 3.2E-05 44.8 6.3 18 140-157 52-69 (328)
456 PRK05800 cobU adenosylcobinami 86.6 6.8 0.00015 35.7 10.0 17 141-157 3-19 (170)
457 PRK14970 DNA polymerase III su 86.6 6.8 0.00015 40.6 11.4 18 140-157 40-57 (367)
458 PRK06871 DNA polymerase III su 86.5 4.8 0.0001 40.9 9.7 40 126-166 4-50 (325)
459 cd03239 ABC_SMC_head The struc 86.5 0.68 1.5E-05 42.6 3.4 42 248-289 115-156 (178)
460 PRK06321 replicative DNA helic 86.5 10 0.00022 40.8 12.6 114 138-262 225-349 (472)
461 PRK08699 DNA polymerase III su 86.5 5.6 0.00012 40.5 10.3 45 248-295 112-156 (325)
462 TIGR00763 lon ATP-dependent pr 86.4 2.2 4.8E-05 49.0 8.2 19 138-156 346-364 (775)
463 cd00268 DEADc DEAD-box helicas 86.4 3.9 8.5E-05 38.2 8.7 72 348-423 68-149 (203)
464 PRK05748 replicative DNA helic 86.4 7.5 0.00016 41.6 11.8 118 135-262 199-327 (448)
465 PRK09087 hypothetical protein; 86.3 1.6 3.5E-05 41.8 6.0 40 252-293 90-129 (226)
466 PRK06090 DNA polymerase III su 86.3 5.4 0.00012 40.3 10.0 41 125-166 4-51 (319)
467 cd01128 rho_factor Transcripti 86.3 2.3 5E-05 41.4 7.1 20 136-155 13-32 (249)
468 KOG1513 Nuclear helicase MOP-3 86.2 0.71 1.5E-05 50.7 3.7 155 123-291 263-454 (1300)
469 KOG0730 AAA+-type ATPase [Post 86.2 6.1 0.00013 43.1 10.6 55 99-156 428-485 (693)
470 PF10593 Z1: Z1 domain; Inter 86.0 2.9 6.4E-05 40.4 7.6 88 373-465 110-201 (239)
471 COG0210 UvrD Superfamily I DNA 86.0 2.1 4.5E-05 48.4 7.6 71 124-199 2-72 (655)
472 TIGR03346 chaperone_ClpB ATP-d 86.0 5.1 0.00011 46.6 10.9 18 140-157 195-212 (852)
473 PRK13822 conjugal transfer cou 85.9 1.1 2.3E-05 50.0 5.1 47 139-194 224-270 (641)
474 COG1074 RecB ATP-dependent exo 85.7 1.5 3.3E-05 52.5 6.5 60 138-199 15-74 (1139)
475 CHL00095 clpC Clp protease ATP 85.6 2.7 5.9E-05 48.6 8.5 20 139-158 200-219 (821)
476 TIGR00678 holB DNA polymerase 85.6 5.3 0.00012 36.9 9.0 17 141-157 16-32 (188)
477 COG1221 PspF Transcriptional r 85.6 3 6.5E-05 43.3 7.8 23 135-157 97-119 (403)
478 PHA00350 putative assembly pro 85.6 4.1 8.8E-05 42.4 8.8 17 142-158 4-20 (399)
479 PRK13880 conjugal transfer cou 85.4 0.67 1.5E-05 51.6 3.3 44 140-192 176-219 (636)
480 PRK07413 hypothetical protein; 85.3 8.6 0.00019 39.6 10.9 53 248-301 124-178 (382)
481 PRK09354 recA recombinase A; P 85.3 3.2 6.9E-05 42.4 7.7 43 138-187 59-101 (349)
482 PRK10865 protein disaggregatio 85.2 5.6 0.00012 46.2 10.7 18 140-157 200-217 (857)
483 COG0541 Ffh Signal recognition 85.1 25 0.00054 36.7 13.9 131 141-302 102-235 (451)
484 PRK05595 replicative DNA helic 85.1 3.4 7.5E-05 44.1 8.4 117 136-263 198-325 (444)
485 PRK11634 ATP-dependent RNA hel 85.0 3 6.5E-05 46.6 8.1 70 349-422 74-154 (629)
486 COG1660 Predicted P-loop-conta 85.0 20 0.00044 34.7 12.3 25 359-383 258-283 (286)
487 PRK13876 conjugal transfer cou 84.9 1 2.2E-05 50.3 4.3 47 140-195 145-191 (663)
488 PRK06305 DNA polymerase III su 84.9 8.4 0.00018 41.2 11.2 18 141-158 41-58 (451)
489 cd03221 ABCF_EF-3 ABCF_EF-3 E 84.8 6.7 0.00015 34.5 8.9 30 248-277 87-116 (144)
490 PRK10263 DNA translocase FtsK; 84.8 3.5 7.6E-05 48.7 8.6 27 140-166 1011-1037(1355)
491 KOG0347 RNA helicase [RNA proc 84.8 1.6 3.6E-05 46.1 5.4 53 351-407 265-321 (731)
492 PRK09165 replicative DNA helic 84.8 5.3 0.00012 43.3 9.7 123 136-263 214-355 (497)
493 TIGR03345 VI_ClpV1 type VI sec 84.8 4.8 0.0001 46.7 9.8 102 142-294 599-721 (852)
494 PRK04328 hypothetical protein; 84.7 1.9 4.1E-05 42.1 5.7 52 138-197 22-73 (249)
495 TIGR02767 TraG-Ti Ti-type conj 84.6 0.9 2E-05 50.2 3.8 45 140-193 212-256 (623)
496 TIGR03743 SXT_TraD conjugative 84.4 2.2 4.7E-05 47.6 6.6 52 139-197 176-229 (634)
497 TIGR00602 rad24 checkpoint pro 84.2 9.3 0.0002 42.5 11.3 50 100-157 79-128 (637)
498 cd01393 recA_like RecA is a b 84.1 3 6.6E-05 39.8 6.9 47 137-184 17-63 (226)
499 cd01125 repA Hexameric Replica 84.1 7.2 0.00016 37.7 9.5 59 141-200 3-66 (239)
500 TIGR00635 ruvB Holliday juncti 84.0 2.5 5.5E-05 42.5 6.5 17 140-156 31-47 (305)
No 1
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5e-95 Score=714.33 Aligned_cols=460 Identities=62% Similarity=1.030 Sum_probs=442.9
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcE
Q 007743 97 GIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTG 176 (591)
Q Consensus 97 ~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 176 (591)
.......|+.+.|++.+++++..+||..||++|+.+||.++.|+|+++.|.||||||+||+||+++.+++..+.++++..
T Consensus 77 s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 77 SITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred chhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEE
Q 007743 177 VIVICPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVI 255 (591)
Q Consensus 177 ~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVl 255 (591)
+||||||||||.|++.+++++..++ ++.++.++||.+...+...+.++++|+|+|||||++|+++.+++..++++++|+
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999998999999999
Q ss_pred eCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh
Q 007743 256 DEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335 (591)
Q Consensus 256 DEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (591)
||||+++++||...+.+|+..+|+ .+|+++||||+++.|+++++..+..+|.++.+.+.....+...+.|.|++++...
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk-~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPK-QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccc-cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 999999999999999999999997 9999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCC
Q 007743 336 RFILLYSFLKRNLS-KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLD 414 (591)
Q Consensus 336 k~~~l~~~l~~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiD 414 (591)
++.+++.+|+++.. .++||||+||..+.+++++|..+.++|..+||+++|..|..+..+|++.+..|||||||++||+|
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 99999999999876 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccChHHHHHHHHHHHHHHH
Q 007743 415 IPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVA 494 (591)
Q Consensus 415 ip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (591)
+|+|+|||+||+|.++++||||+|||||.| ..|.+++|+.|.|..|+++|+ .+|++.+++++.+.++++..++.++.
T Consensus 396 ~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~g-k~G~alL~l~p~El~Flr~LK--~lpl~~~e~~~~~~~~v~~~~~~li~ 472 (543)
T KOG0342|consen 396 IPDVDWVVQYDPPSDPEQYIHRVGRTAREG-KEGKALLLLAPWELGFLRYLK--KLPLEEFEFPPLKPEDVQSQLEKLIS 472 (543)
T ss_pred CCCceEEEEeCCCCCHHHHHHHhccccccC-CCceEEEEeChhHHHHHHHHh--hCCCcccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999964 689999999999999999998 79999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCCCCccccccccchhhhhcc
Q 007743 495 NNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNLTIDSSASKFRKKT 560 (591)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~p~~~~~~~~~~~~~~~~~ 560 (591)
.+|.+.+.+..||.+|+++|++|+++.+|+++.++|..++.|||+..||.+.++++..++...+++
T Consensus 473 ~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La~~~~s~gf~~pp~v~~~i~~~~~~k~~~~ 538 (543)
T KOG0342|consen 473 KNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELAAVAKSFGFSVPPAVDLKIDGKMGLKGNKG 538 (543)
T ss_pred HHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHHHHHHHcCCCCCccceeeccccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999987776544433
No 2
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-89 Score=676.25 Aligned_cols=442 Identities=45% Similarity=0.747 Sum_probs=426.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
....|.+|+|+..++++|++.+|..||.+|+.+||..|.|+||+..|.|||||||||++|+|++|++..|.+..|..|||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
|+||||||.|+++++.++++++.+..++++||.+...+..++ +.++|+|||||||++||..+..+..+++.+||+||||
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 999999999999999999999999999999999988776665 4589999999999999999999999999999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHH
Q 007743 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339 (591)
Q Consensus 260 ~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 339 (591)
+|+++||...+..|+..+|+ .+|++|||||.+..+.+|+++.+.+ |.+|.+.......++..+.|+|+.++..+|+.+
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~-~RQTLLFSATqt~svkdLaRLsL~d-P~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPK-KRQTLLFSATQTKSVKDLARLSLKD-PVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHhHHHHHHHHHHhCCh-hheeeeeecccchhHHHHHHhhcCC-CcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 99999999999999999998 9999999999999999999998875 999999877778899999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
|+.+|+.+...++|||++||+++.++++.++.+ |+++..+||.|+|..|..++.+|...+..||+|||+++||+|||.
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999999999999999999999999999987 789999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhh-HHHHHHHHHcCCCccccccChHHHHHHHHHHHHHHHcc
Q 007743 418 VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE-LQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANN 496 (591)
Q Consensus 418 v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (591)
|+|||++|+|.++++|+||+|||+|. +..|.++++++|.| ..++..|.+.+|++.....++.++..+...++.++...
T Consensus 384 VdwViQ~DCPedv~tYIHRvGRtAR~-~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~l~~ll~~~ 462 (758)
T KOG0343|consen 384 VDWVIQVDCPEDVDTYIHRVGRTARY-KERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKLTSIRNKLEALLAKD 462 (758)
T ss_pred cceEEEecCchhHHHHHHHhhhhhcc-cCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHhhhHHHHHHHHHhhC
Confidence 99999999999999999999999996 57899999999988 78899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCCCCc
Q 007743 497 YYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKV 545 (591)
Q Consensus 497 ~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~p~~ 545 (591)
..+...++++|.+|+++.+....+.+|++..+++..+|.||||...|++
T Consensus 463 ~eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p~~ 511 (758)
T KOG0343|consen 463 PELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTPRI 511 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCchh
Confidence 9999999999999999999999999999999999999999999999994
No 3
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-85 Score=641.37 Aligned_cols=442 Identities=38% Similarity=0.663 Sum_probs=403.0
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCC-CcEEE
Q 007743 102 TSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRN-GTGVI 178 (591)
Q Consensus 102 ~~f~~l~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~-~~~~l 178 (591)
..|++++ |+++++++|..+||..+||+|..+||.++.++||++.|+||||||+||++|++..+++......+ ...+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4688775 66999999999999999999999999999999999999999999999999999999765333222 36799
Q ss_pred EEcCChHHHHHHHHHHHHHHhh-cCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcC-CCCccCCceEEEE
Q 007743 179 VICPTRELAIQTHAVAKDLLKY-HSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNT-KGFIYKNLKCLVI 255 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~-~~~~~~~l~~lVl 255 (591)
||+||||||.||.+++..|... .++.+.+++||.....+...+. ++++|+|||||||.+++++. ..+.++++++||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999887 6788999999988888877764 57899999999999999873 3455679999999
Q ss_pred eCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh
Q 007743 256 DEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335 (591)
Q Consensus 256 DEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (591)
||||+++++||...+..|+..+|+ .+++.|||||++..+.+|.+.++++ |+.+.+.......++..+..+|+.|+...
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPK-QRRTGLFSATq~~~v~dL~raGLRN-pv~V~V~~k~~~~tPS~L~~~Y~v~~a~e 241 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPK-QRRTGLFSATQTQEVEDLARAGLRN-PVRVSVKEKSKSATPSSLALEYLVCEADE 241 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhccc-ccccccccchhhHHHHHHHHhhccC-ceeeeecccccccCchhhcceeeEecHHH
Confidence 999999999999999999999999 9999999999999999999999886 99999888777778999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCC
Q 007743 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL 413 (591)
Q Consensus 336 k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gi 413 (591)
|+..++.+|......++|||++||..++++...|..+ ...++.+||.|++..|..++..|.+....+|+|||+++|||
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999999999999999999999999999999876 67899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcC-CCccccccChHHHHHHHHHHHHH
Q 007743 414 DIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAK-VPVKEYEFDQKKLANVQSHLEKL 492 (591)
Q Consensus 414 Dip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 492 (591)
|||+|+||||||+|.+++.|+||+|||||+| +.|.+++|+.|+|..|+.+|+..+ ++++....+...+. +.+.+..+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~g-r~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~-~~~~ir~~ 399 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAG-REGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLS-VYQDIRSI 399 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhcc-CccceEEEecccHHHHHHHHHhcCccchhhhcccccchh-HHHHHHHH
Confidence 9999999999999999999999999999985 789999999999999999998875 55666555544443 67888899
Q ss_pred HHcchhHHHHHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCCCCccc
Q 007743 493 VANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKVNL 547 (591)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~p~~~~ 547 (591)
+..+..+.+...+||+||+++|..|.+..||+++.||++.||.+|||...|++..
T Consensus 400 ~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~YgLl~lP~M~E 454 (567)
T KOG0345|consen 400 ISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATLYGLLRLPKMPE 454 (567)
T ss_pred hcccHHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999999999999999999999999999999999999998754
No 4
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-81 Score=619.40 Aligned_cols=446 Identities=41% Similarity=0.704 Sum_probs=394.7
Q ss_pred CCCcccccccCCCCHHHHHHHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhc--ccCCCC
Q 007743 97 GIMSTTSFDSLGLSQHTFRAIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNA--QFAPRN 173 (591)
Q Consensus 97 ~~~~~~~f~~l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~--~~~~~~ 173 (591)
.+.....|.+|||++.+...|. .|++..||.+|+++||.+++|+|++|.++||||||++|++|+++.|... ...+..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 4566788999999999999997 5999999999999999999999999999999999999999999999764 345668
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcC-CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceE
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHS-QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKC 252 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~ 252 (591)
|+.+|||+||||||.|+|+.+.++.+.+. +..+.+.||.....+..++++|++|+|+|||||++||.++..+.+++++|
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 99999999999999999999999987654 45588999999999999999999999999999999999999999999999
Q ss_pred EEEeCchhhhccccHHHHHHHHHhCCC------------CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCC-----
Q 007743 253 LVIDEADRILEANFEEEMRQIMKLLPK------------KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDG----- 315 (591)
Q Consensus 253 lVlDEah~l~~~~f~~~~~~i~~~l~~------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~----- 315 (591)
|||||||+|++.||..++..|++.+.. ...|.+|+|||++..|..|+...+.+ |++|..+..
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkD-pv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKD-PVYISLDKSHSQLN 369 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccC-ceeeeccchhhhcC
Confidence 999999999999999999999988722 13789999999999999999988875 888873221
Q ss_pred ------------------CcccccCCceeEEEecCchhHHHHHHHHHHh----cCCCcEEEEecChhhHHHHHHHHHHc-
Q 007743 316 ------------------RTKVTNEGLQQGYCVVPSAKRFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYI- 372 (591)
Q Consensus 316 ------------------~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~----~~~~~~iVF~~s~~~~~~l~~~L~~~- 372 (591)
.....++.+.|.|.++|..-++..|..+|.+ ....++|||+++++.+++.+.+|...
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 1134566789999999999999888888765 34568999999999999999998752
Q ss_pred ---------------------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChh
Q 007743 373 ---------------------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPK 431 (591)
Q Consensus 373 ---------------------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~ 431 (591)
+..++.+||+|+|++|..+++.|...+..||+||||++||+|+|+|++||+||+|.+++
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 35688999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccC------------------hHHHHHHHHHHHHHH
Q 007743 432 EYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFD------------------QKKLANVQSHLEKLV 493 (591)
Q Consensus 432 ~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 493 (591)
+|+||+|||+|+| .+|.+++|+.|.|..|++.|+...+.+.++... .......+..++.++
T Consensus 530 dylHRvGRTARaG-~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~~k~~~~e~~~~at~~q~~~e~~~ 608 (708)
T KOG0348|consen 530 DYLHRVGRTARAG-EKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKDKAKTKEWQERATTLQLNLERLV 608 (708)
T ss_pred HHHHHhhhhhhcc-CCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCcccccccchhhhhhHHHHHHHHHHHH
Confidence 9999999999986 789999999999999999998877665443221 122334567788888
Q ss_pred HcchhHHHHHHHHHHHHHHHHhcCc--CccccccCCcCHHHHHHHcCCCCCCC
Q 007743 494 ANNYYLNKSAKDAYRSYILAYNSHS--MKDIFNVHRLDLQAVAASFCFSSPPK 544 (591)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~f~~~~~~~~~l~~~~g~~~~p~ 544 (591)
..+......+.++|++|+++|.+|. ++.||+++.++++++|+||+|.+.|.
T Consensus 609 ~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSFaLReaP~ 661 (708)
T KOG0348|consen 609 VGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSFALREAPG 661 (708)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhhHhhhcch
Confidence 8888999999999999999999984 79999999999999999999999994
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-79 Score=585.72 Aligned_cols=381 Identities=39% Similarity=0.625 Sum_probs=353.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|.+|++.+.+++++...||..||+||+++||.++.|+|||+.|.||||||.+|+||++++|+... ...+++|+
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p----~~~~~lVL 135 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP----KLFFALVL 135 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC----CCceEEEe
Confidence 35799999999999999999999999999999999999999999999999999999999999999842 34789999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||||||.||.+.+..++...++.+.+++||.+...+...+.+.++|||||||+|++|+.+.+.|.+..++++|+||||+
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
+++++|.+.+..|+..+|. .+|+++||||+|..+..+.+..+.+ |..+.+.. ...+...+.|.|..++...|..+|
T Consensus 216 lLd~dF~~~ld~ILk~ip~-erqt~LfsATMt~kv~kL~rasl~~-p~~v~~s~--ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPR-ERQTFLFSATMTKKVRKLQRASLDN-PVKVAVSS--KYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hhhhhhHHHHHHHHHhcCc-cceEEEEEeecchhhHHHHhhccCC-CeEEeccc--hhcchHHhhhheEeccccccchhH
Confidence 9999999999999999997 9999999999999999999877765 77776654 567888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
..++....+..+||||++|..+.+++-+|..+|+.+..+||.|++..|.-.++.|++|...||||||+++||+|+|.|++
T Consensus 292 V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 292 VYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccccChHHHHHHHHHHH
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKLANVQSHLE 490 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 490 (591)
|||||+|.+..+||||+||+||+| ++|.+|.|++..|...+.+|+. .+-....+..+......+.+.+.
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaG-rsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~erv~ 441 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAG-RSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNERVA 441 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccC-CCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence 999999999999999999999986 7999999999999998888853 34455566666655545544443
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-79 Score=601.64 Aligned_cols=387 Identities=36% Similarity=0.579 Sum_probs=352.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.+|.+++||..+++++..+||..|||||..+||..+.|+|++.+|.||||||.+|.+|+|++|+-.... ....+||||+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-~~~TRVLVL~ 259 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-VAATRVLVLV 259 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-CcceeEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999998753222 3457899999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
||||||.|++.+.++++.++.+.+++++||.+...+...++..+||||+|||||.+||.+.+.|.++++.+||+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC---chhHHH
Q 007743 262 LEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP---SAKRFI 338 (591)
Q Consensus 262 ~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~---~~~k~~ 338 (591)
++.+|.+++..|+..+|+ .+|++||||||+..+.+|+.+.+.. |+.|.+++. ..+...+.|.|+.+. ...+-.
T Consensus 340 LeegFademnEii~lcpk-~RQTmLFSATMteeVkdL~slSL~k-Pvrifvd~~--~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPK-NRQTMLFSATMTEEVKDLASLSLNK-PVRIFVDPN--KDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHhccc-cccceeehhhhHHHHHHHHHhhcCC-CeEEEeCCc--cccchhhhHHHheeccccccccHH
Confidence 999999999999999998 9999999999999999999999976 888888774 345556777777554 345777
Q ss_pred HHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCC
Q 007743 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAV 418 (591)
Q Consensus 339 ~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v 418 (591)
+|..++.......+|||+.|++.+.++.-+|--+|+.+..+||.++|.+|...++.|+++++.||||||+++|||||++|
T Consensus 416 ~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 416 MLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH----cCCCccccccChHHHHHHHHHHHHHHH
Q 007743 419 DWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA----AKVPVKEYEFDQKKLANVQSHLEKLVA 494 (591)
Q Consensus 419 ~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (591)
..||||++|.+...|+||+|||+|+| +.|.++.|+...|...++.+.. .+-++..-.+++..++.....++++-.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAG-RaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ieemE~ 574 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAG-RAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIEEMED 574 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcc-cCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999986 7899999999999999988854 355666666777777666666655543
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-75 Score=597.42 Aligned_cols=362 Identities=36% Similarity=0.588 Sum_probs=338.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHh--cccCCCCCcEEEE
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYN--AQFAPRNGTGVIV 179 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~--~~~~~~~~~~~li 179 (591)
..|+.++|++.+.++|+..||..|||||.++||.++.|+|++..|.|||||||+|+||++.++.. .......++.+||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999986 2334456899999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
|+||||||.|+...+..++....+++.+++||.....+...+.++++|+|+|||||.++++... +.++++.|+|+||||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-LNLSRVTYLVLDEAD 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC-ccccceeEEEeccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 889999999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHH
Q 007743 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339 (591)
Q Consensus 260 ~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 339 (591)
+|+++||.++++.|+..++++.+|++++|||+|..+..++..++. +|..+.+..........++.|....|+...|...
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~ 328 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAKLRK 328 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHHHHH
Confidence 999999999999999999776789999999999999999999888 7999988876566778889999999998888888
Q ss_pred HHHHHHhc---CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCC
Q 007743 340 LYSFLKRN---LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP 416 (591)
Q Consensus 340 l~~~l~~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip 416 (591)
|..+|... ..+++||||+|++.|+.+...|+..++++..|||+.+|.+|..+++.|++|+..||||||+++||||+|
T Consensus 329 l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~ 408 (519)
T KOG0331|consen 329 LGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVP 408 (519)
T ss_pred HHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCc
Confidence 88888764 477999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHH
Q 007743 417 AVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLK 466 (591)
Q Consensus 417 ~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~ 466 (591)
+|++|||||+|.++++|+||+|||||+| .+|.+++|++..+......+.
T Consensus 409 dV~lVInydfP~~vEdYVHRiGRTGRa~-~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 409 DVDLVINYDFPNNVEDYVHRIGRTGRAG-KKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred cccEEEeCCCCCCHHHHHhhcCccccCC-CCceEEEEEeHHHHHHHHHHH
Confidence 9999999999999999999999999985 689999999999887766553
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-71 Score=589.33 Aligned_cols=360 Identities=39% Similarity=0.621 Sum_probs=335.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
..|++|+|++.++++|.++||..|||||..+||.++.|+|++++|+||||||++|++|+++.+... .......+||++
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~~~~~~~aLil~ 106 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--VERKYVSALILA 106 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--cccCCCceEEEC
Confidence 679999999999999999999999999999999999999999999999999999999999997642 111111299999
Q ss_pred CChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 182 PTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
||||||.|+++.+..++.+. ++.+..++||.+...+...+..+++|||+|||||++|+.... +.++.+.++|+||||+
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~-l~l~~v~~lVlDEADr 185 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK-LDLSGVETLVLDEADR 185 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC-cchhhcCEEEeccHhh
Confidence 99999999999999999998 799999999999999998888899999999999999999884 8899999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh-HHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFIL 339 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-k~~~ 339 (591)
|+++||.+++..|+..+|. .+|+++||||+|..+..+++.++. +|..+.+.......+...+.|.|..+.... |+.+
T Consensus 186 mLd~Gf~~~i~~I~~~~p~-~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 186 MLDMGFIDDIEKILKALPP-DRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhcCCCHHHHHHHHHhCCc-ccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 9999999999999999998 999999999999999999998887 588888886555568889999999999876 9999
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
|..++......++||||+|+..++.++..|...|+.+..+||+|+|.+|.++++.|++|+.+||||||+++||||||+|+
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChh-hHHHHHHHHH
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE-ELQFLRYLKA 467 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~-e~~~~~~l~~ 467 (591)
+|||||+|.+++.|+||+|||||+| ..|.++.|+++. |...++.+..
T Consensus 344 ~VinyD~p~~~e~yvHRiGRTgRaG-~~G~ai~fv~~~~e~~~l~~ie~ 391 (513)
T COG0513 344 HVINYDLPLDPEDYVHRIGRTGRAG-RKGVAISFVTEEEEVKKLKRIEK 391 (513)
T ss_pred eeEEccCCCCHHHheeccCccccCC-CCCeEEEEeCcHHHHHHHHHHHH
Confidence 9999999999999999999999975 789999999986 8888877754
No 9
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-71 Score=547.90 Aligned_cols=362 Identities=35% Similarity=0.559 Sum_probs=318.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC-CcEEEEccCCCCchHHhHHHHHHHHHhcc---------c
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG-KDVLGAARTGSGKTLAFLIPAVELLYNAQ---------F 169 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~---------~ 169 (591)
....|..|+|+..++++|..+||..||+||..+||.+..| .|++..|.|||||||||.||+++.+.... .
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3456999999999999999999999999999999999999 79999999999999999999999665421 1
Q ss_pred CCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC--cc
Q 007743 170 APRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF--IY 247 (591)
Q Consensus 170 ~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~--~~ 247 (591)
.....+.+||++||||||.|+.+.+..++.++++.+..++||.....+.+.+...++|||+||||||.++.....+ .+
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 1122335999999999999999999999999999999999999999999999899999999999999999876532 37
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCC----CCccEEEEeccCchh---------------------HHHH-HHh
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPK----KDRQTALFSATQTKK---------------------VEDL-ARL 301 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~----~~~q~ll~SAT~~~~---------------------~~~l-~~~ 301 (591)
+++.+||+||||||++.|+...+..|++.+.. ..+|+++||||++-. ++.+ ...
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 88999999999999999999999999998862 468999999997632 2223 334
Q ss_pred hCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccC
Q 007743 302 SFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHG 381 (591)
Q Consensus 302 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~ 381 (591)
.+...|.+|++... ..+...+....+.|+...|-.+|+.+|..+ ++++|||||+++.+.+++-+|..++++.+.+|+
T Consensus 419 g~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred CccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 56677888887663 345556666677788888888888887765 689999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHH
Q 007743 382 KQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461 (591)
Q Consensus 382 ~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~ 461 (591)
.|.|.+|.+.+++|.+....|||||||++||+|||+|.|||||.+|.+.+-|+||+|||+|++ ..|.+++|+.|.|+..
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~-~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARAN-SEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccccccc-CCCeEEEEeChHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 6799999999999988
Q ss_pred HHHH
Q 007743 462 LRYL 465 (591)
Q Consensus 462 ~~~l 465 (591)
++.|
T Consensus 575 ~~KL 578 (731)
T KOG0347|consen 575 LKKL 578 (731)
T ss_pred HHHH
Confidence 8777
No 10
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-70 Score=516.89 Aligned_cols=372 Identities=34% Similarity=0.532 Sum_probs=336.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
+..+|+.|||++|+.+.|+.+|+..|||+|..+||.||.|+|+|.+|.||||||++|.+|++++|... ..|..++|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed----P~giFalv 80 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED----PYGIFALV 80 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC----CCcceEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999775 36788999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC---CCCccCCceEEEEe
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT---KGFIYKNLKCLVID 256 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~---~~~~~~~l~~lVlD 256 (591)
++||||||.|+.+.|..+++..+.++.+++||.+.-.+...+...+++||+|||||.+++..+ -.+.+.+++++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999999998899999999999999999999887 34568999999999
Q ss_pred CchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhH
Q 007743 257 EADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336 (591)
Q Consensus 257 Eah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 336 (591)
|||++++..|.+.+..+...+|. .+|+++||||+++.+..+........ ............+.+.+.|.|..++...+
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~-~RQtLlfSATitd~i~ql~~~~i~k~-~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPK-PRQTLLFSATITDTIKQLFGCPITKS-IAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred chhhhhccchhhHHhhhhccCCC-ccceEEEEeehhhHHHHhhcCCcccc-cceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999998 79999999999999888766544331 22222222345677889999999999999
Q ss_pred HHHHHHHHHhc---CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCC
Q 007743 337 FILLYSFLKRN---LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL 413 (591)
Q Consensus 337 ~~~l~~~l~~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gi 413 (591)
..+|+.+|+.. ..+.++||++++.+|+.++..|+.+++.+..+|+.|+|.+|...+..|+++..+||||||+++||+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 99999999763 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccccC
Q 007743 414 DIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFD 478 (591)
Q Consensus 414 Dip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~~ 478 (591)
|||.|++|||||+|.+|.+|+||+|||+|+| +.|.++.|+++.|...+..+.+ -|-++.++...
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAG-R~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAG-RKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhccc-CCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999985 7899999999999999988864 34455555443
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.6e-69 Score=535.70 Aligned_cols=367 Identities=30% Similarity=0.496 Sum_probs=337.4
Q ss_pred CCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcc-----
Q 007743 94 GGGGIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ----- 168 (591)
Q Consensus 94 ~~~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~----- 168 (591)
+..-+.+..+|++.+++..+++.+...||..|||||+.+||..++.+|+|..|.||||||++|++|++-.+....
T Consensus 237 g~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~ 316 (673)
T KOG0333|consen 237 GGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARL 316 (673)
T ss_pred CCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchh
Confidence 344455678999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred cCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 169 FAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 169 ~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.....|+.++|++|||+||+||.+...+|++..++.+..++||....++--++..||+|+|+|||+|.+.|.+.. +.++
T Consensus 317 en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~-lvl~ 395 (673)
T KOG0333|consen 317 ENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY-LVLN 395 (673)
T ss_pred hhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH-HHhc
Confidence 123468999999999999999999999999999999999999999998888899999999999999999998876 6789
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCC------------------------CccEEEEeccCchhHHHHHHhhCC
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKK------------------------DRQTALFSATQTKKVEDLARLSFQ 304 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~------------------------~~q~ll~SAT~~~~~~~l~~~~~~ 304 (591)
++.+||+||||+|+++||.+++..|+..+|.. .+|+++||||+|+.++.|++.++.
T Consensus 396 qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr 475 (673)
T KOG0333|consen 396 QCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR 475 (673)
T ss_pred cCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh
Confidence 99999999999999999999999999998741 279999999999999999998887
Q ss_pred CCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccC
Q 007743 305 TTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQK 384 (591)
Q Consensus 305 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 384 (591)
. |+++.+.. .......+.|.+..+..+.+...|..++..+...++|||+|+++.|+.++..|...|+.++.|||+-+
T Consensus 476 ~-pv~vtig~--~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~ 552 (673)
T KOG0333|consen 476 R-PVVVTIGS--AGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKS 552 (673)
T ss_pred C-CeEEEecc--CCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCcc
Confidence 6 99888876 34456678899999999999999999999998999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHH
Q 007743 385 QQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRY 464 (591)
Q Consensus 385 ~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~ 464 (591)
|++|..++..|++|...||||||+++||||||+|.+|||||++.++++|+||+|||||+| +.|.++.|+++.+...+..
T Consensus 553 qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAG-k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 553 QEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAG-KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccc-cCceeEEEeccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 6899999999998665444
Q ss_pred H
Q 007743 465 L 465 (591)
Q Consensus 465 l 465 (591)
|
T Consensus 632 L 632 (673)
T KOG0333|consen 632 L 632 (673)
T ss_pred H
Confidence 4
No 12
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-69 Score=521.48 Aligned_cols=429 Identities=29% Similarity=0.444 Sum_probs=361.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccC--CCCCcEEEE
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA--PRNGTGVIV 179 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~--~~~~~~~li 179 (591)
.+|++++|+++|++++.++||..||-+|+.+||.++.|+|+++.|.||||||++|+||+++.|+..... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999999876443 446789999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCC--eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeC
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQ--TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDE 257 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~--~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDE 257 (591)
++||||||+|+|.++.++..+++. ++.-+....+.......+...++|||+||++++.++.......+..+++||+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 999999999999999999888763 333344444444455667788999999999999999887756688999999999
Q ss_pred chhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH
Q 007743 258 ADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337 (591)
Q Consensus 258 ah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 337 (591)
||.++..||.+++..+...+|+ ..|.+++|||++.++..+.++++.+ |+++.+.+.... .+..+.|+++.|...+|+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr-~~Q~~LmSATl~dDv~~LKkL~l~n-PviLkl~e~el~-~~dqL~Qy~v~cse~DKf 255 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPR-IYQCFLMSATLSDDVQALKKLFLHN-PVILKLTEGELP-NPDQLTQYQVKCSEEDKF 255 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCc-hhhheeehhhhhhHHHHHHHHhccC-CeEEEeccccCC-CcccceEEEEEeccchhH
Confidence 9999999999999999999997 8999999999999999999988765 888888876554 678899999999999999
Q ss_pred HHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc--------
Q 007743 338 ILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-------- 408 (591)
Q Consensus 338 ~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-------- 408 (591)
.+++.+++.. ..+++|||+||++.+.++.-+|++.|+..+.++|.||...|..++++|+.|-+.|+||||.
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 9999999864 4889999999999999999999999999999999999999999999999999999999992
Q ss_pred ---------------------------cccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHH-
Q 007743 409 ---------------------------AARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ- 460 (591)
Q Consensus 409 ---------------------------~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~- 460 (591)
.+|||||.+|..|||||+|.++..|+||+|||||+ +++|.++.|+.|.+..
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg-~n~GtalSfv~P~e~~g 414 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARG-NNKGTALSFVSPKEEFG 414 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccC-CCCCceEEEecchHHhh
Confidence 47999999999999999999999999999999995 5789999999998865
Q ss_pred --HHHHHH-----HcCC-CccccccChHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HHHhcCcCccccccCCcCH
Q 007743 461 --FLRYLK-----AAKV-PVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYI--LAYNSHSMKDIFNVHRLDL 530 (591)
Q Consensus 461 --~~~~l~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~~~~~f~~~~~~~ 530 (591)
.++.+. ..+. -+.+|.|....++.+.-+.+..........-. +|...-+ .-.++++++..|..+.-|+
T Consensus 415 ~~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~eD~~ravTkvAvr--eaR~kEikqEll~SeKLK~~FeeNprdl 492 (569)
T KOG0346|consen 415 KESLESILKDENRQEGRQILQPYQFRMEEVESFRYRAEDALRAVTKVAVR--EARLKEIKQELLNSEKLKAFFEENPRDL 492 (569)
T ss_pred hhHHHHHHhhHHhhcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhcChHHH
Confidence 333332 2233 56788888888887776666554433222211 2222222 2334556777777777776
Q ss_pred HHHHHH
Q 007743 531 QAVAAS 536 (591)
Q Consensus 531 ~~l~~~ 536 (591)
..|-+-
T Consensus 493 ~lLrhD 498 (569)
T KOG0346|consen 493 QLLRHD 498 (569)
T ss_pred HHhhcC
Confidence 655543
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-67 Score=483.98 Aligned_cols=359 Identities=31% Similarity=0.533 Sum_probs=333.0
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEE
Q 007743 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVI 178 (591)
Q Consensus 99 ~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~l 178 (591)
....+|+++||++.+++++.+.||..|+.+|+.|||.|+.|+||+++|..|+|||.+|.+.+++.+.-. ....++|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~----~r~tQ~l 99 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS----VRETQAL 99 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc----cceeeEE
Confidence 345689999999999999999999999999999999999999999999999999999998888765332 2347899
Q ss_pred EEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 179 VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
|++||||||.|+.+++..++.++++.+..++||.+...+.+.+.-|.+++.+|||+++++++... +..+.+++||+|||
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~-L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS-LRTRAVKMLVLDEA 178 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc-ccccceeEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999998876 77889999999999
Q ss_pred hhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh-HH
Q 007743 259 DRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RF 337 (591)
Q Consensus 259 h~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-k~ 337 (591)
|.|++.||..++..|++.+|+ ..|++++|||+|.++.+....++ .+|+.+.+.. ...+.++++|+|+.+..++ |+
T Consensus 179 DemL~kgfk~Qiydiyr~lp~-~~Qvv~~SATlp~eilemt~kfm-tdpvrilvkr--deltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPP-GAQVVLVSATLPHEILEMTEKFM-TDPVRILVKR--DELTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCC-CceEEEEeccCcHHHHHHHHHhc-CCceeEEEec--CCCchhhhhhheeeechhhhhH
Confidence 999999999999999999998 99999999999999999988655 5588887765 4567788999999988766 99
Q ss_pred HHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 338 ~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
..|+++.....-.+++|||||+..++++.+.++..++.+..+||+|++++|..+++.|+.|+.+||++||+.+||||+|.
T Consensus 255 dtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~q 334 (400)
T KOG0328|consen 255 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQ 334 (400)
T ss_pred hHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcce
Confidence 99999988877889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 418 VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 418 v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
|++|||||+|.+.+.|+||+||.||. |++|.++-|+..+|...++.+.+
T Consensus 335 VslviNYDLP~nre~YIHRIGRSGRF-GRkGvainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 335 VSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVKSDDLRILRDIEQ 383 (400)
T ss_pred eEEEEecCCCccHHHHhhhhcccccc-CCcceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999996 58999999999999998887754
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7e-65 Score=536.88 Aligned_cols=363 Identities=30% Similarity=0.500 Sum_probs=326.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccC---CCCCcE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA---PRNGTG 176 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~---~~~~~~ 176 (591)
...+|++++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+...... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 44689999999999999999999999999999999999999999999999999999999999998764331 124678
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEe
Q 007743 177 VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 177 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
+|||+|||+||.|+++.+..+....++.+..++||.....+...+..+++|+|+||++|++++.... +.++++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~-~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH-INLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccccEEEEe
Confidence 9999999999999999999999999999999999998888877888889999999999999997654 778999999999
Q ss_pred CchhhhccccHHHHHHHHHhCCC-CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh
Q 007743 257 EADRILEANFEEEMRQIMKLLPK-KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335 (591)
Q Consensus 257 Eah~l~~~~f~~~~~~i~~~l~~-~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (591)
|||+|++.+|...+..++..++. ..+++++||||++..+..+....+. .|..+.+.... .....+.+.+..+....
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~-~p~~i~v~~~~--~~~~~i~~~~~~~~~~~ 241 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMN-NPEYVEVEPEQ--KTGHRIKEELFYPSNEE 241 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCC-CCEEEEEcCCC--cCCCceeEEEEeCCHHH
Confidence 99999999999999999999985 3567899999999999888877665 47777665432 23455667777777788
Q ss_pred HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCC
Q 007743 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDI 415 (591)
Q Consensus 336 k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDi 415 (591)
|...|..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+
T Consensus 242 k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 242 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 88899999888778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 416 PAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 416 p~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
|+|++|||||+|.++..|+||+|||||.| ..|.+++|+++++...+..+.+
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G-~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAG-ASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCC-CCeeEEEEeCHHHHHHHHHHHH
Confidence 99999999999999999999999999975 7899999999999888877743
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-64 Score=546.01 Aligned_cols=364 Identities=33% Similarity=0.541 Sum_probs=326.4
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhccc-CCCCCcE
Q 007743 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQF-APRNGTG 176 (591)
Q Consensus 98 ~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~-~~~~~~~ 176 (591)
+.+..+|++++|++.++++|.++||..|||+|.++||.+++|+|+|++||||||||++|++|++.++..... ....++.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~ 205 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPI 205 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcE
Confidence 445678999999999999999999999999999999999999999999999999999999999988865322 2235788
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEe
Q 007743 177 VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 177 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
+|||+|||+||.|+++.+..+....++.+.+++||.....+...+..+++|+|+||++|++++.... ..++++++||||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~-~~l~~v~~lViD 284 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV-TNLRRVTYLVLD 284 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC-CChhhCcEEEee
Confidence 9999999999999999999999888899999999999888888888999999999999999998764 678999999999
Q ss_pred CchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhH
Q 007743 257 EADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336 (591)
Q Consensus 257 Eah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 336 (591)
|||+|++++|...+..|+..++. .+|+++||||+|..+..+++..+...+..+.+.... ......+.+.+..+....|
T Consensus 285 EAd~mld~gf~~~i~~il~~~~~-~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~~~~k 362 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIRP-DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVEEHEK 362 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCCC-CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEechhH
Confidence 99999999999999999999986 899999999999999999988776667777765432 2334567777877877788
Q ss_pred HHHHHHHHHhc--CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCC
Q 007743 337 FILLYSFLKRN--LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLD 414 (591)
Q Consensus 337 ~~~l~~~l~~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiD 414 (591)
...|..++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..|||||++++||||
T Consensus 363 ~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGID 442 (545)
T PTZ00110 363 RGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLD 442 (545)
T ss_pred HHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCC
Confidence 88888887764 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 415 IPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 415 ip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
+|+|++|||||+|.++++|+||+|||||+| ..|.+++|+++.+....+.|
T Consensus 443 i~~v~~VI~~d~P~s~~~yvqRiGRtGR~G-~~G~ai~~~~~~~~~~~~~l 492 (545)
T PTZ00110 443 VKDVKYVINFDFPNQIEDYVHRIGRTGRAG-AKGASYTFLTPDKYRLARDL 492 (545)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccccCC-CCceEEEEECcchHHHHHHH
Confidence 999999999999999999999999999975 68999999999887655444
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-66 Score=482.50 Aligned_cols=365 Identities=30% Similarity=0.505 Sum_probs=339.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
...|+++.|.+.++..+.+.||..|+|+|.++||.++.|+|+++.|..|+|||.+|++|+++.+... .+...++|+
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~----~~~IQ~~il 159 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK----KNVIQAIIL 159 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc----ccceeEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999987532 456789999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||||||.|+...+.++.+.+++.+...+||++..++.-++....+++|+||||+++++...- -.+++..++|+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV-a~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV-ADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc-ccchhceEEEechhhh
Confidence 999999999999999999999999999999999999998898999999999999999998765 4689999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
|++..|.+.+..++..+|+ .+|++++|||+|-.+..+...++.+ |..|.+.+ ..+..++.|+|..+....|...|
T Consensus 239 lLs~~F~~~~e~li~~lP~-~rQillySATFP~tVk~Fm~~~l~k-Py~INLM~---eLtl~GvtQyYafV~e~qKvhCL 313 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPK-ERQILLYSATFPLTVKGFMDRHLKK-PYEINLME---ELTLKGVTQYYAFVEERQKVHCL 313 (459)
T ss_pred hhchhhhhHHHHHHHhCCc-cceeeEEecccchhHHHHHHHhccC-cceeehhh---hhhhcchhhheeeechhhhhhhH
Confidence 9999999999999999998 9999999999999999999988876 77777654 46778899999999999999999
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
-.++....-...||||||...++.++..+.++|+.|+.+|+.|.|+.|.+++..|++|.++.|||||.+.||||+++|++
T Consensus 314 ntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNv 393 (459)
T KOG0326|consen 314 NTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNV 393 (459)
T ss_pred HHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeE
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccc
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYE 476 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~ 476 (591)
|||||+|.++++|+||+||+||.| ..|.++.+++.+|...+..+++ .|..++++.
T Consensus 394 VINFDfpk~aEtYLHRIGRsGRFG-hlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 394 VINFDFPKNAETYLHRIGRSGRFG-HLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred EEecCCCCCHHHHHHHccCCccCC-CcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 999999999999999999999965 7899999999999988888854 565555543
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-63 Score=540.44 Aligned_cols=369 Identities=34% Similarity=0.526 Sum_probs=332.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++|||+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----~~~~~~LIL~ 81 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----LKAPQILVLA 81 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----cCCCeEEEEe
Confidence 469999999999999999999999999999999999999999999999999999999999887542 2457899999
Q ss_pred CChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 182 PTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
|||+||.|+++.+..+.... +..+..++||.....+...+..+++|||+||++|++++.... +.++++++|||||||.
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~-l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVLDEADE 160 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cchhhceEEEeccHHH
Confidence 99999999999999988765 688889999998888888888899999999999999998755 7789999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
|++++|...+..|+..+|. ..|+++||||+|..+..+.+.++.. |..+.+... ......+.+.|..+....|...|
T Consensus 161 ml~~gf~~di~~Il~~lp~-~~q~llfSAT~p~~i~~i~~~~l~~-~~~i~i~~~--~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPE-GHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSS--VTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred HhhcccHHHHHHHHHhCCC-CCeEEEEEccCChhHHHHHHHHcCC-CeEEEccCc--cccCCceEEEEEEechhhHHHHH
Confidence 9999999999999999997 8999999999999999988877654 666666542 23445677888888888888999
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
..++......++||||+|+..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++
T Consensus 237 ~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 99998877789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccccChH
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQK 480 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~~~~ 480 (591)
|||||+|.++++|+||+|||||+| ..|.+++|+.+.|...++.+.. .+..+....++..
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaG-r~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~ 376 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 376 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCC-CcceEEEEechHHHHHHHHHHHHhCCCcceecCCcH
Confidence 999999999999999999999975 6899999999999988888854 4666666655543
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.1e-63 Score=526.74 Aligned_cols=359 Identities=35% Similarity=0.562 Sum_probs=322.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccC--CCCCcEEEEE
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA--PRNGTGVIVI 180 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~--~~~~~~~lil 180 (591)
+|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+...... .....++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999998654321 1234579999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||++||.|+++.+..+....++.+..++||.....+...+..+++|+|+||++|++++.... +.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-VKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC-cccccceEEEeecHHH
Confidence 999999999999999999999999999999998888877888889999999999999887655 6789999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
|++++|...+..++..++. .+|+++||||++..+..+....+.+ |..+.+... ......+.+.+..++...+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~-~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~~~l 236 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPA-KRQNLLFSATFSDDIKALAEKLLHN-PLEIEVARR--NTASEQVTQHVHFVDKKRKRELL 236 (456)
T ss_pred HhccccHHHHHHHHHhCCc-cCeEEEEeCCCcHHHHHHHHHHcCC-CeEEEEecc--cccccceeEEEEEcCHHHHHHHH
Confidence 9999999999999999987 8899999999999998888876654 666655432 23345677788888888888888
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++
T Consensus 237 ~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~ 316 (456)
T PRK10590 237 SQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPH 316 (456)
T ss_pred HHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
||||++|.++.+|+||+|||||+| ..|.+++|+++.|...++.+..
T Consensus 317 VI~~~~P~~~~~yvqR~GRaGR~g-~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 317 VVNYELPNVPEDYVHRIGRTGRAA-ATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred EEEeCCCCCHHHhhhhccccccCC-CCeeEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999975 6899999999999888777643
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.1e-63 Score=528.30 Aligned_cols=356 Identities=31% Similarity=0.531 Sum_probs=324.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+... ....++||+
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~----~~~~~~lil 78 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK----RFRVQALVL 78 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc----cCCceEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999988542 235679999
Q ss_pred cCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 181 CPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
+|||+||.|+.+.++.+.... +..+..++||.+...+...+..+++|+|+||++|.+++.... +.+.++++|||||||
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~-~~l~~l~~lViDEad 157 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT-LDLDALNTLVLDEAD 157 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC-ccHHHCCEEEEECHH
Confidence 999999999999999988755 678889999999888888888899999999999999998755 678999999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHH
Q 007743 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339 (591)
Q Consensus 260 ~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 339 (591)
+|++++|...+..++..++. .+|+++||||+++.+..+...++.. |..+.+.... ....+.+.+..++...+...
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~-~~q~ll~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~ 232 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPA-RRQTLLFSATYPEGIAAISQRFQRD-PVEVKVESTH---DLPAIEQRFYEVSPDERLPA 232 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCc-ccEEEEEEecCcHHHHHHHHHhcCC-CEEEEECcCC---CCCCeeEEEEEeCcHHHHHH
Confidence 99999999999999999997 8999999999999999988876654 7777665432 23457888888888889999
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
+..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+++
T Consensus 233 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~ 312 (460)
T PRK11776 233 LQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE 312 (460)
T ss_pred HHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC
Confidence 99999887788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
+||+||+|.++.+|+||+|||||+| ..|.+++|+.+.|...++.+..
T Consensus 313 ~VI~~d~p~~~~~yiqR~GRtGR~g-~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 313 AVINYELARDPEVHVHRIGRTGRAG-SKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred eEEEecCCCCHhHhhhhcccccCCC-CcceEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999975 6799999999999888777754
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-62 Score=528.89 Aligned_cols=362 Identities=31% Similarity=0.477 Sum_probs=320.0
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhccc---CCCC
Q 007743 97 GIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQF---APRN 173 (591)
Q Consensus 97 ~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~---~~~~ 173 (591)
.+.+..+|++++|++.+++.|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++..... ....
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 3456678999999999999999999999999999999999999999999999999999999999998864321 1235
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEE
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCL 253 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~l 253 (591)
++.+|||+|||+||.|+++.++.+....+..+..++||.....+...+..+++|+|+||++|.+++.... +.++++.+|
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~-~~l~~v~~l 274 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD-IELDNVSVL 274 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC-ccchheeEE
Confidence 7899999999999999999999998888888999999998888888888899999999999999998764 778999999
Q ss_pred EEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc
Q 007743 254 VIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS 333 (591)
Q Consensus 254 VlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 333 (591)
||||||+|++++|...+..|+..++ .+|+++||||+++.+..++...+. .+..+.+... ......+.+.+..+..
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~--~~q~l~~SATl~~~v~~l~~~~~~-~~~~i~~~~~--~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS--QPQVLLFSATVSPEVEKFASSLAK-DIILISIGNP--NRPNKAVKQLAIWVET 349 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC--CCcEEEEEeeCCHHHHHHHHHhCC-CCEEEEeCCC--CCCCcceeEEEEeccc
Confidence 9999999999999999999999886 579999999999999999887664 4777766542 2344556777788888
Q ss_pred hhHHHHHHHHHHhcC--CCcEEEEecChhhHHHHHHHHHH-cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccc
Q 007743 334 AKRFILLYSFLKRNL--SKKVMVFFSSCNSVKFHSELLRY-IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA 410 (591)
Q Consensus 334 ~~k~~~l~~~l~~~~--~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 410 (591)
..+...+..++.... ..++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~ 429 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLG 429 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhh
Confidence 778778888886533 46899999999999999999975 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 411 RGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 411 ~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
||||+|+|++|||||+|.++.+|+||+|||||.| ..|.+++|+++++...+..+
T Consensus 430 rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g-~~G~ai~f~~~~~~~~~~~l 483 (518)
T PLN00206 430 RGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG-EKGTAIVFVNEEDRNLFPEL 483 (518)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHhccccccCC-CCeEEEEEEchhHHHHHHHH
Confidence 9999999999999999999999999999999975 68999999999886544433
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.8e-63 Score=533.11 Aligned_cols=363 Identities=32% Similarity=0.479 Sum_probs=324.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhccc---CCCCCcEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQF---APRNGTGV 177 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~---~~~~~~~~ 177 (591)
..+|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ....++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 357999999999999999999999999999999999999999999999999999999999999875321 11235789
Q ss_pred EEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeC
Q 007743 178 IVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDE 257 (591)
Q Consensus 178 lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDE 257 (591)
|||+||++||.|+++.+..+....++.+..++||.....+...+..+++|||+||++|++++.....+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999888877777788999999999999999876556788999999999
Q ss_pred chhhhccccHHHHHHHHHhCCCC-CccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhH
Q 007743 258 ADRILEANFEEEMRQIMKLLPKK-DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336 (591)
Q Consensus 258 ah~l~~~~f~~~~~~i~~~l~~~-~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 336 (591)
||+|++.+|...+..|+..++.. .+|+++||||++..+..+....+.. |..+.+... ......+.+.+..+....+
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~v~~~--~~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNE-PEKLVVETE--TITAARVRQRIYFPADEEK 244 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcC-CcEEEeccc--cccccceeEEEEecCHHHH
Confidence 99999999999999999998852 5799999999999998888876654 544444332 2344567788888888888
Q ss_pred HHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCC
Q 007743 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP 416 (591)
Q Consensus 337 ~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip 416 (591)
...+..++......++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 88899888887788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 417 AVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 417 ~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
+|++|||||+|.++.+|+||+|||||.| ..|.+++|+++.+...+..+..
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G-~~G~ai~~~~~~~~~~l~~i~~ 374 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLG-EEGDAISFACERYAMSLPDIEA 374 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCC-CCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999975 6899999999998877777643
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-64 Score=480.46 Aligned_cols=362 Identities=33% Similarity=0.522 Sum_probs=323.0
Q ss_pred CCccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcc--cCCCCC
Q 007743 98 IMSTTSFDS-LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ--FAPRNG 174 (591)
Q Consensus 98 ~~~~~~f~~-l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~--~~~~~~ 174 (591)
+.+..+|++ +.-.+.+++.+++.||..|||||+++||.+|+|.|++..|.||+|||++||+|.+-++.... ....++
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 334567765 57889999999999999999999999999999999999999999999999999887765432 223578
Q ss_pred cEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEE
Q 007743 175 TGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLV 254 (591)
Q Consensus 175 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lV 254 (591)
+.+|+++|||+||.|+.-...++ .+.+....+++||.+...+...+.++.+|+|+||++|.++...+. +.+.++.|||
T Consensus 295 p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~-i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV-INLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe-eeeeeeEEEE
Confidence 89999999999999998877665 566788899999999999999999999999999999999887765 7899999999
Q ss_pred EeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCch
Q 007743 255 IDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA 334 (591)
Q Consensus 255 lDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 334 (591)
|||||+|+++||.+++..|+--+++ ++|+++.|||+|+.+..|+..++.. |..+.+..-. ......+.|.+.+....
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRP-DRqtvmTSATWP~~VrrLa~sY~Ke-p~~v~vGsLd-L~a~~sVkQ~i~v~~d~ 449 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRP-DRQTVMTSATWPEGVRRLAQSYLKE-PMIVYVGSLD-LVAVKSVKQNIIVTTDS 449 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCC-cceeeeecccCchHHHHHHHHhhhC-ceEEEecccc-eeeeeeeeeeEEecccH
Confidence 9999999999999999999998887 9999999999999999999988765 8888776533 34456678888777778
Q ss_pred hHHHHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCC
Q 007743 335 KRFILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL 413 (591)
Q Consensus 335 ~k~~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gi 413 (591)
+|+..+..++... ...++||||..+..++.|..-|...|+..-.+||+-.|.+|...++.|+.|+++||||||+++|||
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 8888777777664 477999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 414 DIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 414 Dip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
|+|+|+||+|||+|.+++.|+||+|||||+| +.|.++.|++.+|......|
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG-r~G~sis~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAG-RTGTSISFLTRNDWSMAEEL 580 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCC-CCcceEEEEehhhHHHHHHH
Confidence 9999999999999999999999999999985 78999999999998766555
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1e-64 Score=483.85 Aligned_cols=356 Identities=32% Similarity=0.552 Sum_probs=320.0
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhc----ccCC
Q 007743 96 GGIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNA----QFAP 171 (591)
Q Consensus 96 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~----~~~~ 171 (591)
..+++..+|.++.++..+++.|++.|+.+|||+|-+.+|.+++|+|+|..|-||||||++|++|++...+.. .+..
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~ 243 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFAR 243 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcccc
Confidence 344566789999999999999999999999999999999999999999999999999999999998766543 4556
Q ss_pred CCCcEEEEEcCChHHHHHHHHHHHHHHhhc------CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC
Q 007743 172 RNGTGVIVICPTRELAIQTHAVAKDLLKYH------SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF 245 (591)
Q Consensus 172 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~------~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~ 245 (591)
..|+..|||||+||||.|+++.+..+...+ .++..+++||.+...+...+..|.+|+|+|||||.++|.... +
T Consensus 244 ~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~-~ 322 (610)
T KOG0341|consen 244 GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI-M 322 (610)
T ss_pred CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh-c
Confidence 789999999999999999999998887543 356788999999999999999999999999999999998765 7
Q ss_pred ccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCce
Q 007743 246 IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQ 325 (591)
Q Consensus 246 ~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~ 325 (591)
.+.-++||++||||+|+++||.++++.|+..+.. .+|+++||||+|..+..+++..+-. |+.+.+.. .....-++.
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~-QRQTLLFSATMP~KIQ~FAkSALVK-PvtvNVGR--AGAAsldVi 398 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG-QRQTLLFSATMPKKIQNFAKSALVK-PVTVNVGR--AGAASLDVI 398 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh-hhheeeeeccccHHHHHHHHhhccc-ceEEeccc--ccccchhHH
Confidence 7888899999999999999999999999999987 8999999999999999999988765 88887764 334444555
Q ss_pred eEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEE
Q 007743 326 QGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLC 405 (591)
Q Consensus 326 ~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLva 405 (591)
|.+..+....|+.+|+..|... ..++||||..+..++.++++|--.|+.++.+||+-.|++|...++.|+.|+-+||||
T Consensus 399 QevEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 399 QEVEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred HHHHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 5566667778888888877664 679999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhh
Q 007743 406 TDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458 (591)
Q Consensus 406 T~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e 458 (591)
||+++.|+|||++.+|||||+|..++.|+||+|||||.| ++|.+.+|+....
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg-~~GiATTfINK~~ 529 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG-KTGIATTFINKNQ 529 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC-Ccceeeeeecccc
Confidence 999999999999999999999999999999999999975 7899999998753
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-63 Score=498.98 Aligned_cols=358 Identities=32% Similarity=0.477 Sum_probs=324.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCC------CC
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAP------RN 173 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~------~~ 173 (591)
....|++-.+.+.+...++..||..|||+|+.+||.+..|+|++++|+||||||.+|++|++..++...... ..
T Consensus 72 ~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~ 151 (482)
T KOG0335|consen 72 HIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGV 151 (482)
T ss_pred CcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCC
Confidence 334888889999999999999999999999999999999999999999999999999999999998764321 12
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEE
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCL 253 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~l 253 (591)
.+.+||++||||||.|+|+..+++.-.....+...+||.+...+...+.++|+|+|||||+|.+++.... +.+.++++|
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~-i~l~~~k~~ 230 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK-ISLDNCKFL 230 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce-eehhhCcEE
Confidence 5889999999999999999999999999999999999999999999999999999999999999998776 889999999
Q ss_pred EEeCchhhhc-cccHHHHHHHHHhCCC---CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEE
Q 007743 254 VIDEADRILE-ANFEEEMRQIMKLLPK---KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYC 329 (591)
Q Consensus 254 VlDEah~l~~-~~f~~~~~~i~~~l~~---~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 329 (591)
||||||+|++ ++|.++++.|+..... ..+|+++||||.|..+..++..++..++.++.+.. ...+..++.|.+.
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~r--vg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGR--VGSTSENITQKIL 308 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEee--eccccccceeEee
Confidence 9999999999 9999999999987643 57899999999999999988888776666665543 5567788999999
Q ss_pred ecCchhHHHHHHHHHHhcC----CC-----cEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCc
Q 007743 330 VVPSAKRFILLYSFLKRNL----SK-----KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400 (591)
Q Consensus 330 ~~~~~~k~~~l~~~l~~~~----~~-----~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~ 400 (591)
.+....|...|++++.... .+ +++|||.+++.+..+..+|...++++..+||..++.+|.+.++.|+.|+.
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~ 388 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA 388 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc
Confidence 9999998888888887533 33 89999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHH
Q 007743 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461 (591)
Q Consensus 401 ~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~ 461 (591)
.|||||++++||||+|+|++||+||+|.+..+|+||+|||||+| ..|.++.|+...+...
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~G-n~G~atsf~n~~~~~i 448 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVG-NGGRATSFFNEKNQNI 448 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCC-CCceeEEEeccccchh
Confidence 99999999999999999999999999999999999999999974 7899999999655433
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.8e-61 Score=513.25 Aligned_cols=358 Identities=32% Similarity=0.535 Sum_probs=319.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
+|++++|++.++++|.++||..||++|.++||.++.|+|++++||||+|||++|++|+++.+.........+.++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999998764333334578999999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 183 TRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 183 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
|++||.|+++.+..+....+..+..++||.........+..+++|+|+||++|++++.... +.+.++++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~-~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN-FDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-cCcccCCEEEEECHHHHh
Confidence 9999999999999999999999999999998888777777889999999999999998765 778999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCccEEEEeccCch-hHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc-hhHHHHH
Q 007743 263 EANFEEEMRQIMKLLPKKDRQTALFSATQTK-KVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS-AKRFILL 340 (591)
Q Consensus 263 ~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~-~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~l 340 (591)
+++|...+..+...++. ..|+++||||++. .+..+....+. .|..+.+... ......+.+.+..+.. ..+..+|
T Consensus 161 ~~~~~~~~~~i~~~~~~-~~q~~~~SAT~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 161 DMGFAQDIETIAAETRW-RKQTLLFSATLEGDAVQDFAERLLN-DPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred CCCcHHHHHHHHHhCcc-ccEEEEEEeecCHHHHHHHHHHHcc-CCEEEEecCC--cccccCceEEEEEeCCHHHHHHHH
Confidence 99999999999998886 7899999999985 46777776554 4777766542 2334456676666654 6688888
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+|++
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 88888767889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHH
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLK 466 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~ 466 (591)
|||||+|.+...|+||+|||||+| ..|.+++|+...|...+..+.
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g-~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAG-RKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCC-CCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999975 689999999999987776664
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-61 Score=470.88 Aligned_cols=372 Identities=34% Similarity=0.514 Sum_probs=334.3
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcc-cCCCC
Q 007743 95 GGGIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ-FAPRN 173 (591)
Q Consensus 95 ~~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~-~~~~~ 173 (591)
.....+.++|+.+++++.|..++.+..|..|||+|.+++|..+.|+||+..|.||||||.+|+.|++-+++... ..+.+
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 34455678999999999999999999999999999999999999999999999999999999999998887653 34578
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEE
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCL 253 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~l 253 (591)
++..||++|||+||.||+.++++|++..++++.+++||.+...+...|..++.|||||||||++++.... ..+.++.+|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa-tn~~rvS~L 374 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA-TNLSRVSYL 374 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc-ccceeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999997654 789999999
Q ss_pred EEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc
Q 007743 254 VIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS 333 (591)
Q Consensus 254 VlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 333 (591)
||||||+|+++||.++++.|..++.+ .+|+++||||++..++.+++..+.. |+.+.... .......+.|.+.+|++
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirp-drQtllFsaTf~~kIe~lard~L~d-pVrvVqg~--vgean~dITQ~V~V~~s 450 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRP-DRQTLLFSATFKKKIEKLARDILSD-PVRVVQGE--VGEANEDITQTVSVCPS 450 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCC-cceEEEeeccchHHHHHHHHHHhcC-CeeEEEee--hhccccchhheeeeccC
Confidence 99999999999999999999999997 9999999999999999999998876 66554442 34456678888888776
Q ss_pred -hhHHHHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcccc
Q 007743 334 -AKRFILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAAR 411 (591)
Q Consensus 334 -~~k~~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 411 (591)
..|+..|..-|-. ...+++|||+.-...++.+...|...+++|..+||+|.|.+|.+++.+|+.+...|||+||+++|
T Consensus 451 ~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaar 530 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAAR 530 (731)
T ss_pred cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhc
Confidence 4577766655544 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHH----HHHHHHcCCCc
Q 007743 412 GLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF----LRYLKAAKVPV 472 (591)
Q Consensus 412 GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~----~~~l~~~~~~~ 472 (591)
|+|||++..|||||+-.+++.|.||+|||||+| .+|.++.++++.|..+ ++.|...+..+
T Consensus 531 gldI~~ikTVvnyD~ardIdththrigrtgRag-~kGvayTlvTeKDa~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 531 GLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAG-EKGVAYTLVTEKDAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred CCCccccceeecccccchhHHHHHHhhhccccc-ccceeeEEechhhHHHhhHHHHHHhhccccC
Confidence 999999999999999999999999999999986 5799999999998765 45555555443
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-59 Score=500.52 Aligned_cols=362 Identities=32% Similarity=0.534 Sum_probs=320.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCC---CCCcEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAP---RNGTGV 177 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~---~~~~~~ 177 (591)
...|.+++|++.++++|.++||..||++|.++|+.++.|+|+|+++|||||||++|++|+++.+....... ....++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 35799999999999999999999999999999999999999999999999999999999999987642111 125789
Q ss_pred EEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEe
Q 007743 178 IVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 178 lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
|||+||++||.|+++.+..+....+..+..++||.....+...+. ..++|+|+||++|++++.... ..++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-VHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-cccccCceEEec
Confidence 999999999999999999999999999999999988777666654 468999999999999887655 678999999999
Q ss_pred CchhhhccccHHHHHHHHHhCCC-CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh
Q 007743 257 EADRILEANFEEEMRQIMKLLPK-KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335 (591)
Q Consensus 257 Eah~l~~~~f~~~~~~i~~~l~~-~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (591)
|||++++.+|...+..|+..++. ..+|++++|||++..+..++..++.. +..+.+... ......+.+.+..+....
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTD-PAIVEIEPE--NVASDTVEQHVYAVAGSD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccC-CEEEEeccC--cCCCCcccEEEEEecchh
Confidence 99999999999999999998874 35799999999999998888876654 776666543 233345667777777778
Q ss_pred HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCC
Q 007743 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDI 415 (591)
Q Consensus 336 k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDi 415 (591)
+...+..++......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..|||||+++++|||+
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 88888888888777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 416 PAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 416 p~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
|++++||+|++|.++.+|+||+||+||.| ..|.+++|+.++|..++..+.+
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g-~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAG-ASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCC-CCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999975 6899999999998877777744
No 28
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-60 Score=468.69 Aligned_cols=359 Identities=32% Similarity=0.492 Sum_probs=309.1
Q ss_pred cccccCCCCHHH----------HHHHHHCCCCCCcHHHHHhhcccc---------CCCcEEEEccCCCCchHHhHHHHHH
Q 007743 102 TSFDSLGLSQHT----------FRAIQDMGFQFMTQIQARAVPPLM---------VGKDVLGAARTGSGKTLAFLIPAVE 162 (591)
Q Consensus 102 ~~f~~l~l~~~l----------~~~l~~~~~~~~~~~Q~~~i~~il---------~g~dvlv~a~TGsGKTl~~~lp~l~ 162 (591)
..|+.++++..+ .++|.+++++.++|+|..++|+++ .++|++|.||||||||++|.|||++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 457777766554 445899999999999999999985 3689999999999999999999999
Q ss_pred HHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcC-----CCEEEeCchHHHH
Q 007743 163 LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKG-----VNLLVATPGRLLD 237 (591)
Q Consensus 163 ~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~Iiv~Tp~~L~~ 237 (591)
.|.... .+..+||||+||++|+.|+++.+.++....++.|+.+.|..+...+..++.+. .||+|+|||||.+
T Consensus 207 ~L~~R~---v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD 283 (620)
T KOG0350|consen 207 LLSSRP---VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD 283 (620)
T ss_pred HHccCC---ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH
Confidence 987643 24578999999999999999999999999999999999999999998888654 3899999999999
Q ss_pred HHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC---------------------------------CCccE
Q 007743 238 HLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK---------------------------------KDRQT 284 (591)
Q Consensus 238 ~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~---------------------------------~~~q~ 284 (591)
||.+.++|.+++++++||||||||++..|..++..++..+.. ++.+.
T Consensus 284 Hl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~k 363 (620)
T KOG0350|consen 284 HLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWK 363 (620)
T ss_pred hccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHh
Confidence 999999999999999999999999998888877777654421 13457
Q ss_pred EEEeccCchhHHHHHHhhCCCCCeEEEecC--CCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhH
Q 007743 285 ALFSATQTKKVEDLARLSFQTTPVYIDVDD--GRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSV 362 (591)
Q Consensus 285 ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~ 362 (591)
++||||++..-..+..+.+.. |....+.. ......+..+.+.++.+....+...++.+|......++|+|+++...+
T Consensus 364 L~~satLsqdP~Kl~~l~l~~-Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTLHI-PRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSA 442 (620)
T ss_pred hhcchhhhcChHHHhhhhcCC-CceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHH
Confidence 889999998888888877766 53333321 234556777888899998888999999999999899999999999999
Q ss_pred HHHHHHHH-H---cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhcc
Q 007743 363 KFHSELLR-Y---IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVG 438 (591)
Q Consensus 363 ~~l~~~L~-~---~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~G 438 (591)
.+++..|+ . .++.+-.+.|+++...|...++.|..|.+.||||||+++||||+.+|+.|||||+|.+..+|+||+|
T Consensus 443 ~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~G 522 (620)
T KOG0350|consen 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAG 522 (620)
T ss_pred HHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhc
Confidence 99999887 2 3566777999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 439 RTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 439 R~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
||||+| +.|.|+.++..++...+..+
T Consensus 523 RTARAg-q~G~a~tll~~~~~r~F~kl 548 (620)
T KOG0350|consen 523 RTARAG-QDGYAITLLDKHEKRLFSKL 548 (620)
T ss_pred cccccc-CCceEEEeeccccchHHHHH
Confidence 999986 78999999999887654444
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-59 Score=446.78 Aligned_cols=362 Identities=26% Similarity=0.425 Sum_probs=317.0
Q ss_pred CCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCC
Q 007743 94 GGGGIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAP 171 (591)
Q Consensus 94 ~~~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~ 171 (591)
++.+..+..+|++|+|+|+++++|..|+|..|+.||..++|.++.. +++|.++..|+|||.||.|.+|.++...
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 6778889999999999999999999999999999999999999976 7999999999999999999999876433
Q ss_pred CCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCce
Q 007743 172 RNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLK 251 (591)
Q Consensus 172 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~ 251 (591)
..-+.++.|+|||+||.|+.+++.+.++++++.....+-|.....-. .+ ..+|+|+|||.+++++..-+.+.+..++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~-~i--~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN-KL--TEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC-cc--hhheeeCCCccHHHHHHHHHhhChhhce
Confidence 23567899999999999999999999999987777776665221110 00 1489999999999999886667889999
Q ss_pred EEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEe
Q 007743 252 CLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCV 330 (591)
Q Consensus 252 ~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 330 (591)
++|+||||.|++ .||.++-..|...+|+ ..|+++||||....+..++.....+ +..+.+.. .......+.|+|+.
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~-~~QllLFSATf~e~V~~Fa~kivpn-~n~i~Lk~--eel~L~~IkQlyv~ 310 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPR-NQQLLLFSATFVEKVAAFALKIVPN-ANVIILKR--EELALDNIKQLYVL 310 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCC-cceEEeeechhHHHHHHHHHHhcCC-Cceeeeeh--hhccccchhhheee
Confidence 999999999987 8899999999999997 8999999999999999999877765 55555543 45677889999999
Q ss_pred cCc-hhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc
Q 007743 331 VPS-AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA 409 (591)
Q Consensus 331 ~~~-~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 409 (591)
|+. ..|+..|.++.....-+..||||.|+..+.+++..|...|..+..+||.|...+|..++..|+.|..+|||+|+++
T Consensus 311 C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 311 CACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred ccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 986 5699999997777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCCC------ChhhhhhhccccccCCCCcceEEEEeChhhH-HHHHHHHH
Q 007743 410 ARGLDIPAVDWIVQYDPPD------EPKEYIHRVGRTARGEGARGNALLFLIPEEL-QFLRYLKA 467 (591)
Q Consensus 410 ~~GiDip~v~~VI~~~~P~------s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~-~~~~~l~~ 467 (591)
+||||++.|++|||||+|. ++++|+||+|||||. |++|.++.|+...+. ..+..+.+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRF-GkkG~a~n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRF-GKKGLAINLVDDKDSMNIMNKIQK 454 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccc-cccceEEEeecccCcHHHHHHHHH
Confidence 9999999999999999995 789999999999996 578999999987653 44555544
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.4e-57 Score=478.28 Aligned_cols=357 Identities=30% Similarity=0.543 Sum_probs=315.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.+.++|.++||..|+|+|.++|+.+++|+|++++||||||||++|++|+++.+... ..+.++|||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----~~~~~~lil 102 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----LNACQALIL 102 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----CCCceEEEE
Confidence 3679999999999999999999999999999999999999999999999999999999999876431 246789999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||++||.|+.+.+..++......+..++|+.........+..+++|+|+||++|.+++.... +.++++++||+||||+
T Consensus 103 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 103 APTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDEADE 181 (401)
T ss_pred CCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEecHHH
Confidence 999999999999999998888888888899988877777788889999999999999987655 6789999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc-hhHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS-AKRFIL 339 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~ 339 (591)
+++.+|...+..++..++. ..|++++|||+++.+..+...++.. |..+.+... ......+.+.+..++. ..+...
T Consensus 182 ~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPP-DVQVALFSATMPNEILELTTKFMRD-PKRILVKKD--ELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred HHhcchHHHHHHHHhhCCC-CcEEEEEEecCCHHHHHHHHHHcCC-CEEEEeCCC--CcccCCceEEEEecChHHHHHHH
Confidence 9999999999999999887 8899999999999988887766654 555544332 2234556676666654 346666
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
+..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 77777766678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
+||+||+|.+...|+||+||+||.| ..|.|++|+++++...++.+.+
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g-~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFG-RKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCC-CCceEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999964 6899999999999888887743
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-58 Score=443.32 Aligned_cols=357 Identities=36% Similarity=0.560 Sum_probs=329.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
...|.++||+..+++++.+.||..|||+|+++||.+|.|+|++..|.||||||.||++|++++|.... ..|.+++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---~~g~Ralil 96 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---QTGLRALIL 96 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---ccccceeec
Confidence 35799999999999999999999999999999999999999999999999999999999999987643 467899999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+|||+||.|..++++.+++++++.+.+++||....+++..+..++|||++|||+++.+.-... +.++.+.|||+||||+
T Consensus 97 sptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~-l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT-LTLSSVEYVVFDEADR 175 (529)
T ss_pred cCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee-ccccceeeeeehhhhH
Confidence 999999999999999999999999999999999999999999999999999999987665544 7789999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
|+++||.+++.+++..+|. .+|+++||||+|..+-++++.++.. |..+.++.. ......++..+..+....|..+|
T Consensus 176 lfemgfqeql~e~l~rl~~-~~QTllfSatlp~~lv~fakaGl~~-p~lVRldve--tkise~lk~~f~~~~~a~K~aaL 251 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPE-SRQTLLFSATLPRDLVDFAKAGLVP-PVLVRLDVE--TKISELLKVRFFRVRKAEKEAAL 251 (529)
T ss_pred HHhhhhHHHHHHHHHhCCC-cceEEEEeccCchhhHHHHHccCCC-CceEEeehh--hhcchhhhhheeeeccHHHHHHH
Confidence 9999999999999999998 8899999999999999999988865 877776553 33456677888899999999999
Q ss_pred HHHHHhcC-CCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 341 YSFLKRNL-SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 341 ~~~l~~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
+.++.... ...++|||+|...++++...|...|+.+..++|.|.+..|...+..|+.++..+||.||+++||+|+|-.+
T Consensus 252 l~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplld 331 (529)
T KOG0337|consen 252 LSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLD 331 (529)
T ss_pred HHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccc
Confidence 98887643 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHH
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLK 466 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~ 466 (591)
.|||||+|.+...|+||+||++|+| +.|.+|.|+.+.+..++-.|.
T Consensus 332 nvinyd~p~~~klFvhRVgr~arag-rtg~aYs~V~~~~~~yl~DL~ 377 (529)
T KOG0337|consen 332 NVINYDFPPDDKLFVHRVGRVARAG-RTGRAYSLVASTDDPYLLDLQ 377 (529)
T ss_pred ccccccCCCCCceEEEEecchhhcc-ccceEEEEEecccchhhhhhh
Confidence 9999999999999999999999986 789999999999998877664
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.9e-58 Score=489.05 Aligned_cols=363 Identities=34% Similarity=0.561 Sum_probs=329.7
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhccc-CCCCCcE
Q 007743 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQF-APRNGTG 176 (591)
Q Consensus 98 ~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~-~~~~~~~ 176 (591)
+.+..+|...|++..++..|+++||..|||||.+|||+|+.|+|||++|.||||||++|+||++.++...+. ....|+.
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 445678999999999999999999999999999999999999999999999999999999999976654322 2346899
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC--CCccCCceEEE
Q 007743 177 VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK--GFIYKNLKCLV 254 (591)
Q Consensus 177 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~--~~~~~~l~~lV 254 (591)
+||++|||+||.||+++++.|++.+++.+.+++||.....+...+.+++.|+|||||++.+.+-.+. -..+.++.+||
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 9999999999999999999999999999999999999999999999999999999999999876543 22356667999
Q ss_pred EeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC-c
Q 007743 255 IDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP-S 333 (591)
Q Consensus 255 lDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~ 333 (591)
+||||+|++++|.+++..|+.+++. .+|+++||||+|..++.+++..+. .|+.+.+.. .......+.|.+.+++ .
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrp-drQtvlfSatfpr~m~~la~~vl~-~Pveiiv~~--~svV~k~V~q~v~V~~~e 596 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRP-DRQTVLFSATFPRSMEALARKVLK-KPVEIIVGG--RSVVCKEVTQVVRVCAIE 596 (997)
T ss_pred echhhhhheeccCcccchHHhhcch-hhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEcc--ceeEeccceEEEEEecCc
Confidence 9999999999999999999999987 999999999999999999998887 688877763 4456677888888888 7
Q ss_pred hhHHHHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccC
Q 007743 334 AKRFILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARG 412 (591)
Q Consensus 334 ~~k~~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 412 (591)
..|+..|..+|... ...++||||..+..|..+...|...++.|..+||+.++.+|..+++.|+++.+.+||||++++||
T Consensus 597 ~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarG 676 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARG 676 (997)
T ss_pred hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcc
Confidence 88999999998763 48899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 413 LDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 413 iDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
+|++.+.+|||||+|...+.|+||+|||||+| ++|.|++|+.|.+..+...|
T Consensus 677 Ldv~~l~Lvvnyd~pnh~edyvhR~gRTgrag-rkg~AvtFi~p~q~~~a~dl 728 (997)
T KOG0334|consen 677 LDVKELILVVNYDFPNHYEDYVHRVGRTGRAG-RKGAAVTFITPDQLKYAGDL 728 (997)
T ss_pred cccccceEEEEcccchhHHHHHHHhcccccCC-ccceeEEEeChHHhhhHHHH
Confidence 99999999999999999999999999999975 78999999999776655444
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-57 Score=434.71 Aligned_cols=366 Identities=31% Similarity=0.509 Sum_probs=333.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.+|++++|++.|++++...||..|+.+|+.||+++..|.|+++++++|+|||.+|.+++++.+... .....||+++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~----~ke~qalila 101 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS----VKETQALILA 101 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc----hHHHHHHHhc
Confidence 479999999999999999999999999999999999999999999999999999999999987432 2456799999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
|||+||.|+..+...++..++..+..++||.+...+...+. .+++|+|+|||++.+++... .+..+.++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 99999999999999999999999999999999886665554 45899999999999999877 47788899999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
|+..||.+++..|+..+|. ..|++++|||+|.++..+.+.++. .|..+.+.... .+...++|+|..+....|+..|
T Consensus 181 mLs~gfkdqI~~if~~lp~-~vQv~l~SAT~p~~vl~vt~~f~~-~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPS-DVQVVLLSATMPSDVLEVTKKFMR-EPVRILVKKDE--LTLEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred hhccchHHHHHHHHHHcCc-chhheeecccCcHHHHHHHHHhcc-CceEEEecchh--hhhhheeeeeeeccccccccHH
Confidence 9999999999999999998 889999999999999999997665 48888876543 6688899999999888899999
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
+.+.. .-...+|||||+..+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||+|+.++||||+..+..
T Consensus 257 ~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 257 CDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 99998 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccccCh
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQ 479 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~~~ 479 (591)
||||++|...++|+||+||+||.| .+|.++.|+..++...++.+.+ .+.++++.+...
T Consensus 335 vinydlP~~~~~yihR~gr~gr~g-rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFG-RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred eeeeccccchhhhhhhcccccccC-CCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 999999999999999999999974 7999999999999988888854 567777665443
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.4e-53 Score=463.07 Aligned_cols=386 Identities=19% Similarity=0.231 Sum_probs=285.5
Q ss_pred cCCCCHHHHHHHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 106 SLGLSQHTFRAIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 106 ~l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
.++.+..+...++ -+||..|+|+|.++|+.++.|+|+++.+|||+|||+||++|++.. +..+|||+|++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------~GiTLVISPLi 510 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPLV 510 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------CCcEEEEeCHH
Confidence 3566667766666 489999999999999999999999999999999999999999853 34699999999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh------cCCCEEEeCchHHHH--H-HhcCCCC-ccCCceEEE
Q 007743 185 ELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV------KGVNLLVATPGRLLD--H-LQNTKGF-IYKNLKCLV 254 (591)
Q Consensus 185 eLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Iiv~Tp~~L~~--~-l~~~~~~-~~~~l~~lV 254 (591)
+|+.++...+.. .++....+.++.........+. ..++|||+||++|.. . +.....+ ....+.+||
T Consensus 511 SLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 511 SLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999865554443 3677888888877655544332 458999999999852 1 2111111 134588999
Q ss_pred EeCchhhhccc--cHHHHHHH---HHhCCCCCccEEEEeccCchhHHHHHHhhCC-CCCeEEEecCCCcccccCCceeEE
Q 007743 255 IDEADRILEAN--FEEEMRQI---MKLLPKKDRQTALFSATQTKKVEDLARLSFQ-TTPVYIDVDDGRTKVTNEGLQQGY 328 (591)
Q Consensus 255 lDEah~l~~~~--f~~~~~~i---~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~ 328 (591)
|||||+++++| |++.+..+ ...++ ..++++||||++..+...+...+. ..+.++.....+ .++ .|
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp--~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~R-----pNL--~y 657 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFP--NIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNR-----PNL--WY 657 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCC--CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCc-----cce--EE
Confidence 99999999976 88877764 33344 678999999999998653333332 234333322211 122 33
Q ss_pred EecCchh-HHHHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe
Q 007743 329 CVVPSAK-RFILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT 406 (591)
Q Consensus 329 ~~~~~~~-k~~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT 406 (591)
.+++... ....+..++... .....||||.|++.++.++..|...|+.+..|||+|++.+|..+++.|..|+++|||||
T Consensus 658 ~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 658 SVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred EEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 3444332 244566666543 36689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccc-cc--c----Ch
Q 007743 407 DVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKE-YE--F----DQ 479 (591)
Q Consensus 407 ~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~-~~--~----~~ 479 (591)
++++||||+|+|++||||++|.+++.|+||+|||||.| ..|.|++|+++.|...++.+...+..-.. .. . +.
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG-~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s 816 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG-QRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASS 816 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC-CCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchh
Confidence 99999999999999999999999999999999999964 78999999999999888888654321110 00 0 00
Q ss_pred HHH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHhcCcC
Q 007743 480 KKL-ANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519 (591)
Q Consensus 480 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 519 (591)
... +.-.+.+..++. +.+....|.+.++..|+.+.+
T Consensus 817 ~~~~e~~~~~L~~m~~----yce~~~~CRR~~lL~yFGE~~ 853 (1195)
T PLN03137 817 GRILETNTENLLRMVS----YCENEVDCRRFLQLVHFGEKF 853 (1195)
T ss_pred HHHHHHHHHHHHHHHH----HHhChHhhHHHHHHHHccccc
Confidence 001 111223333322 122234899999999998864
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-54 Score=439.05 Aligned_cols=374 Identities=29% Similarity=0.400 Sum_probs=316.0
Q ss_pred CCccccccc----CCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhccc-CCC
Q 007743 98 IMSTTSFDS----LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQF-APR 172 (591)
Q Consensus 98 ~~~~~~f~~----l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~-~~~ 172 (591)
+....+|.+ +..++.+++.+...+|..|+|+|.++||.++.++|+++|||||||||++|++|++++|..... ...
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 445567776 568999999999999999999999999999999999999999999999999999999876542 224
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHH--hhcCCeEEEEEcCccc-hHHHHHHhcCCCEEEeCchHHHHHHhcCC-CCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLL--KYHSQTVGLVIGGSAR-RGEAERIVKGVNLLVATPGRLLDHLQNTK-GFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~--~~~~~~~~~~~gg~~~-~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-~~~~~ 248 (591)
.|.+++|+.|||+||.|++..+.++. ..++..+......... ..........++|+|+||-++..++.... .+.++
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 57899999999999999999999997 5555554443332211 11111223347999999999999997653 45689
Q ss_pred CceEEEEeCchhhhcc-ccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeE
Q 007743 249 NLKCLVIDEADRILEA-NFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQG 327 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~-~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 327 (591)
.+.++|+||||++++. .|..++..|+..+..+...+-+||||++..+++++...... +..+.+.. .+.....+.|.
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~-~~~vivg~--~~sa~~~V~Qe 364 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSD-LKRVIVGL--RNSANETVDQE 364 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcc-ceeEEEec--chhHhhhhhhh
Confidence 9999999999999998 99999999999998888899999999999999999987654 66666554 33345566776
Q ss_pred EEecC-chhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHH-HHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEE
Q 007743 328 YCVVP-SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELL-RYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLC 405 (591)
Q Consensus 328 ~~~~~-~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L-~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLva 405 (591)
...|. ...|+..+.+++......+++||+.+.+.+..|+..| ...++.+.++||..++.+|..+++.|+.|+++||+|
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 66665 4568999999999999999999999999999999999 677999999999999999999999999999999999
Q ss_pred eCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHH----HcCCCcccc
Q 007743 406 TDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLK----AAKVPVKEY 475 (591)
Q Consensus 406 T~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~----~~~~~~~~~ 475 (591)
|++++|||||.+|++|||||+|.+..+|+||+||+||+| +.|.+++||+..+.++++-+. ..|-++.++
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag-~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~ 517 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG-RSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEK 517 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCC-CCcceEEEeccccchhhhhHHHHHHHcCCcchHH
Confidence 999999999999999999999999999999999999975 789999999999998887663 455444433
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-52 Score=463.78 Aligned_cols=351 Identities=19% Similarity=0.209 Sum_probs=272.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 108 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
.|++.+.++|.++||..||++|.++||.+++|+|+++++|||||||+||++|+++.+.+. .+.++|||+|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----~~~~aL~l~PtraLa 94 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----PRATALYLAPTKALA 94 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----CCcEEEEEcChHHHH
Confidence 489999999999999999999999999999999999999999999999999999998753 467899999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhc-CC--CCccCCceEEEEeCchhhhcc
Q 007743 188 IQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQN-TK--GFIYKNLKCLVIDEADRILEA 264 (591)
Q Consensus 188 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~-~~--~~~~~~l~~lVlDEah~l~~~ 264 (591)
.|++..++.+. ..++.+..+.|+.. ..+...+..+++|||+||++|...+.. .. ...++++++|||||||+|.+
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 99999999986 44667776666655 445566777899999999998653322 11 12378999999999999976
Q ss_pred ccHHHHHHHHHhC-------CCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC-----
Q 007743 265 NFEEEMRQIMKLL-------PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP----- 332 (591)
Q Consensus 265 ~f~~~~~~i~~~l-------~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~----- 332 (591)
.|...+..++..+ +. .+|++++|||+++... ++...+.. +..+ +...... .......+...+
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~-~~q~i~~SATi~n~~~-~~~~l~g~-~~~~-i~~~~~~--~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGA-SPVFVLASATTADPAA-AASRLIGA-PVVA-VTEDGSP--RGARTVALWEPPLTELT 245 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCC-CCEEEEEecCCCCHHH-HHHHHcCC-CeEE-ECCCCCC--cCceEEEEecCCccccc
Confidence 4666655555443 33 6899999999998865 45444443 4433 2221111 111111111111
Q ss_pred -----------chhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc--------CCCeEeccCccCHHHHHHHHH
Q 007743 333 -----------SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFF 393 (591)
Q Consensus 333 -----------~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~--------~~~~~~lh~~~~~~~R~~~~~ 393 (591)
...+...+..++.. ..++||||+|++.++.++..|... +..+..+||++++++|..+++
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred cccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 12355566666654 579999999999999999988764 567889999999999999999
Q ss_pred HhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeC--hhhHHHHHHHH-HcCC
Q 007743 394 DFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI--PEELQFLRYLK-AAKV 470 (591)
Q Consensus 394 ~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~--~~e~~~~~~l~-~~~~ 470 (591)
.|++|+.++||||+++++|||||++++|||||+|.+..+|+||+|||||.| ..|.++++.. +.|..+++... ..+.
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G-~~g~ai~v~~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRG-QGALVVLVARDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCC-CCcEEEEEeCCChHHHHHHhCHHHHhcC
Confidence 999999999999999999999999999999999999999999999999975 6799999986 44555555443 2334
Q ss_pred Ccccc
Q 007743 471 PVKEY 475 (591)
Q Consensus 471 ~~~~~ 475 (591)
+++..
T Consensus 403 ~~e~~ 407 (742)
T TIGR03817 403 PVEAT 407 (742)
T ss_pred CCccc
Confidence 44443
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.9e-54 Score=433.94 Aligned_cols=350 Identities=27% Similarity=0.434 Sum_probs=314.9
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEE
Q 007743 99 MSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVI 178 (591)
Q Consensus 99 ~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~l 178 (591)
.....|++|-|...++..|+..+|..||++|..|||.++.+-|+||+|..|+|||++|.+.+++.|.-. ...+.++
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~----~~~~q~~ 97 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR----SSHIQKV 97 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc----cCcceeE
Confidence 345679999999999999999999999999999999999999999999999999999999988876432 3567899
Q ss_pred EEcCChHHHHHHHHHHHHHHh-hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeC
Q 007743 179 VICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDE 257 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDE 257 (591)
||+||||+|.||.+.+..++. +.+..+...+||+....+..++ +.++|+|+||||+..++.... ++.++++++||||
T Consensus 98 Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~-~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 98 IVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGA-MNMSHVRLFVLDE 175 (980)
T ss_pred EEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcC-CCccceeEEEecc
Confidence 999999999999999999986 5688999999999888776665 458999999999999888765 8899999999999
Q ss_pred chhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCch--
Q 007743 258 ADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA-- 334 (591)
Q Consensus 258 ah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-- 334 (591)
||.|++ ..|..++..|+..+|. .+|++.||||.|..+.++...++.. |.++..... .....+++|++...+..
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~-~rQv~a~SATYp~nLdn~Lsk~mrd-p~lVr~n~~--d~~L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQ-IRQVAAFSATYPRNLDNLLSKFMRD-PALVRFNAD--DVQLFGIKQYVVAKCSPNN 251 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcch-hheeeEEeccCchhHHHHHHHHhcc-cceeecccC--CceeechhheeeeccCCcc
Confidence 999998 7899999999999998 9999999999999998888877765 888877663 34556788888776543
Q ss_pred ------hHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc
Q 007743 335 ------KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV 408 (591)
Q Consensus 335 ------~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~ 408 (591)
.|+..|-.++...+....||||+....|+-++..|...|++|..+.|.|+|.+|..++..++.-..+|||+||+
T Consensus 252 sveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDL 331 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDL 331 (980)
T ss_pred hHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecch
Confidence 36677778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 409 AARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 409 ~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
.+||||-++|++|||.|+|.+.++|.||+|||||.| ..|.+++|+.....
T Consensus 332 taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG-~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 332 TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG-AHGAAVTLLEDERE 381 (980)
T ss_pred hhccCCccccceEEecCCCcchHHHHHHhhhccccc-ccceeEEEeccchh
Confidence 999999999999999999999999999999999964 78999999987543
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.3e-52 Score=441.69 Aligned_cols=364 Identities=18% Similarity=0.275 Sum_probs=270.7
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.+||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. +..+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------~~~~lVi~P~~~L~~dq~~~l~~~- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------DGITLVISPLISLMEDQVLQLKAS- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------CCcEEEEecHHHHHHHHHHHHHHc-
Confidence 589999999999999999999999999999999999999998742 446899999999999988887653
Q ss_pred hhcCCeEEEEEcCccchHHH---HHH-hcCCCEEEeCchHHHHHHhcCCCC-ccCCceEEEEeCchhhhccc--cHHHHH
Q 007743 199 KYHSQTVGLVIGGSARRGEA---ERI-VKGVNLLVATPGRLLDHLQNTKGF-IYKNLKCLVIDEADRILEAN--FEEEMR 271 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~---~~l-~~~~~Iiv~Tp~~L~~~l~~~~~~-~~~~l~~lVlDEah~l~~~~--f~~~~~ 271 (591)
++.+..+.++....... ..+ ...++|+|+||+++.........+ ...++++|||||||+++++| |++.+.
T Consensus 75 ---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 75 ---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 56666666655443221 122 234799999999975322110112 35789999999999999866 677665
Q ss_pred HH---HHhCCCCCccEEEEeccCchhHHHH-HHhhCCCCCeEEEecCCCcccccCCceeEEEecCc-hhHHHHHHHHHH-
Q 007743 272 QI---MKLLPKKDRQTALFSATQTKKVEDL-ARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS-AKRFILLYSFLK- 345 (591)
Q Consensus 272 ~i---~~~l~~~~~q~ll~SAT~~~~~~~l-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~l~~~l~- 345 (591)
.+ ...+| ..+++++|||+++.+... ....-...|..+.....+ .++. +..... ...+..+..++.
T Consensus 152 ~l~~l~~~~~--~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r-----~nl~--~~v~~~~~~~~~~l~~~l~~ 222 (470)
T TIGR00614 152 ALGSLKQKFP--NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR-----PNLY--YEVRRKTPKILEDLLRFIRK 222 (470)
T ss_pred HHHHHHHHcC--CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC-----CCcE--EEEEeCCccHHHHHHHHHHH
Confidence 54 34444 678999999999987543 333222335444433222 1222 222221 234455666665
Q ss_pred hcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC
Q 007743 346 RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD 425 (591)
Q Consensus 346 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 425 (591)
......+||||+|++.++.++..|...++.+..+||+|++.+|..+++.|.+|+.+|||||++++||||+|+|++||||+
T Consensus 223 ~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 223 EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeC
Confidence 34455679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccChHHHHHHHHHHHHHHHcchhHHHHHHH
Q 007743 426 PPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAKD 505 (591)
Q Consensus 426 ~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (591)
+|.+++.|+||+|||||. |..|.|++|+++.|...++.+...... .........+...+. + ......
T Consensus 303 ~P~s~~~y~Qr~GRaGR~-G~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~-~~~~~~ 369 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRD-GLPSECHLFYAPADINRLRRLLMEEPD--------GQQRTYKLKLYEMME---Y-CLNSST 369 (470)
T ss_pred CCCCHHHHHhhhcCcCCC-CCCceEEEEechhHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHH---H-Hhcccc
Confidence 999999999999999996 578999999999999988887553211 001111111111111 1 123458
Q ss_pred HHHHHHHHHhcCc
Q 007743 506 AYRSYILAYNSHS 518 (591)
Q Consensus 506 ~~~~~~~~y~~~~ 518 (591)
|.+..+..|+.+.
T Consensus 370 crr~~l~~~f~~~ 382 (470)
T TIGR00614 370 CRRLILLSHFGEK 382 (470)
T ss_pred CHHHHHHHHcCCc
Confidence 9999999999763
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-51 Score=449.64 Aligned_cols=376 Identities=22% Similarity=0.295 Sum_probs=282.0
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 107 LGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 107 l~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
++++....+.|++ +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. ...+|||+|+++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------~g~tlVisPl~s 76 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------DGLTLVVSPLIS 76 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------CCCEEEEecHHH
Confidence 3445555566654 89999999999999999999999999999999999999999843 345899999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH---HHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 186 LAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE---RIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 186 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
|+.|+.+.+..+ +..+..+.++........ .+. ...+++++||++|........ +...++++|||||||++
T Consensus 77 L~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~-l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 77 LMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH-LAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH-HhhCCCCEEEEeCcccc
Confidence 999988887754 566666666554433222 122 347899999999863211111 33457899999999999
Q ss_pred hccc--cHHHHHHH---HHhCCCCCccEEEEeccCchhHHH-HHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh
Q 007743 262 LEAN--FEEEMRQI---MKLLPKKDRQTALFSATQTKKVED-LARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335 (591)
Q Consensus 262 ~~~~--f~~~~~~i---~~~l~~~~~q~ll~SAT~~~~~~~-l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (591)
+++| |++.+..+ ...+| ..+++++|||+++.+.. +........|........+ .++ .|..+....
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p--~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r-----~nl--~~~v~~~~~ 222 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFP--TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR-----PNI--RYTLVEKFK 222 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCC--CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCC-----Ccc--eeeeeeccc
Confidence 9865 66666544 34444 67899999999988754 3333222334433322211 122 233334444
Q ss_pred HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCC
Q 007743 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDI 415 (591)
Q Consensus 336 k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDi 415 (591)
+...+..++......++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|.+|+.+|||||+++++|||+
T Consensus 223 ~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 223 PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred hHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC
Confidence 55667777777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccChHHHHHHHHHHHHHHHc
Q 007743 416 PAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVAN 495 (591)
Q Consensus 416 p~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (591)
|+|++|||||+|.+.++|+||+|||||. |..|.|++|+++.|...++.+......-. ...+ ....+..+...
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~-G~~~~~ill~~~~d~~~~~~~~~~~~~~~-----~~~~--~~~~l~~~~~~ 374 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRD-GLPAEAMLFYDPADMAWLRRCLEEKPAGQ-----QQDI--ERHKLNAMGAF 374 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCC-CCCceEEEEeCHHHHHHHHHHHhcCCcHH-----HHHH--HHHHHHHHHHH
Confidence 9999999999999999999999999996 47899999999999988888765432110 1111 01122222211
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcC
Q 007743 496 NYYLNKSAKDAYRSYILAYNSHSM 519 (591)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~y~~~~~ 519 (591)
. ....|++.++..|+.+..
T Consensus 375 ----~-~~~~Crr~~~l~yf~e~~ 393 (607)
T PRK11057 375 ----A-EAQTCRRLVLLNYFGEGR 393 (607)
T ss_pred ----H-hcccCHHHHHHHHhCCCC
Confidence 1 235799999999998764
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.5e-50 Score=440.29 Aligned_cols=367 Identities=20% Similarity=0.328 Sum_probs=280.5
Q ss_pred HHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 116 AIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 116 ~l~-~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
.|+ .+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+++.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------~g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------KGLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHHH
Confidence 454 389999999999999999999999999999999999999999742 345899999999999988887
Q ss_pred HHHHhhcCCeEEEEEcCccchHHHHH---H-hcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc--cHH
Q 007743 195 KDLLKYHSQTVGLVIGGSARRGEAER---I-VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN--FEE 268 (591)
Q Consensus 195 ~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~--f~~ 268 (591)
+.+ +..+..+.++......... + ....+|+++||++|........ +...++++|||||||+++++| |++
T Consensus 74 ~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~-l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 74 RAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM-LQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH-HhcCCCCEEEEeCCcccccccCccHH
Confidence 764 5667777666654433221 2 2458999999999864322211 345689999999999999855 777
Q ss_pred HHHHHH---HhCCCCCccEEEEeccCchhHHHHHHhhCC-CCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHH
Q 007743 269 EMRQIM---KLLPKKDRQTALFSATQTKKVEDLARLSFQ-TTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFL 344 (591)
Q Consensus 269 ~~~~i~---~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l 344 (591)
.+..+. ..++ ..+++++|||+++.+.......+. ..+..+.....+ .++ .|.......+...+..++
T Consensus 149 ~y~~l~~l~~~~~--~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r-----~nl--~~~v~~~~~~~~~l~~~l 219 (591)
T TIGR01389 149 EYQRLGSLAERFP--QVPRIALTATADAETRQDIRELLRLADANEFITSFDR-----PNL--RFSVVKKNNKQKFLLDYL 219 (591)
T ss_pred HHHHHHHHHHhCC--CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC-----CCc--EEEEEeCCCHHHHHHHHH
Confidence 766654 3444 355999999999988654433332 223333221111 122 233334455667778888
Q ss_pred HhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEc
Q 007743 345 KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQY 424 (591)
Q Consensus 345 ~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 424 (591)
......++||||+|++.++.+++.|...++++..+||+|+..+|..+++.|.+|.+.|||||+++++|||+|+|++||||
T Consensus 220 ~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 220 KKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 87767899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccChHHHHHHHHHHHHHHHcchhHHHHHH
Q 007743 425 DPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAK 504 (591)
Q Consensus 425 ~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (591)
++|.+.+.|+||+|||||. |..|.|++|+.+.|...++.+.+...+.... .......+..+.. ++ ...
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~-G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~------~~~~~~~l~~~~~---~~--~~~ 367 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRD-GLPAEAILLYSPADIALLKRRIEQSEADDDY------KQIEREKLRAMIA---YC--ETQ 367 (591)
T ss_pred CCCCCHHHHhhhhccccCC-CCCceEEEecCHHHHHHHHHHHhccCCcHHH------HHHHHHHHHHHHH---HH--ccc
Confidence 9999999999999999996 4789999999999999888887654332110 0011222333321 11 235
Q ss_pred HHHHHHHHHHhcCc
Q 007743 505 DAYRSYILAYNSHS 518 (591)
Q Consensus 505 ~~~~~~~~~y~~~~ 518 (591)
.|++.++..|+.+.
T Consensus 368 ~c~r~~~~~~f~~~ 381 (591)
T TIGR01389 368 TCRRAYILRYFGEN 381 (591)
T ss_pred ccHhHHHHHhcCCC
Confidence 89999999999865
No 41
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-50 Score=362.34 Aligned_cols=322 Identities=32% Similarity=0.546 Sum_probs=284.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
.+..|.++-|.|++++++.+.||.+|+.+|.++||...-|-|++++|..|.|||.+|++..++.+.-. .....+|+
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv----~g~vsvlv 115 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV----DGQVSVLV 115 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC----CCeEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999886421 23467899
Q ss_pred EcCChHHHHHHHHHHHHHHhhcC-CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHS-QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
+|.|||||.||.+...++.++++ .++.+.+||.........+.+.++|+|+||||++.+.++.. +.+++++.+|+||+
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~-l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS-LNLKNVKHFVLDEC 194 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc-CchhhcceeehhhH
Confidence 99999999999999999999875 67899999999998888888889999999999999988776 89999999999999
Q ss_pred hhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH
Q 007743 259 DRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337 (591)
Q Consensus 259 h~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 337 (591)
|.|++ .+.+.++..|.+..|. ..|+++||||+++++...++.++.+ |..|.+++ ....+..+++|+|+......|.
T Consensus 195 dkmle~lDMrRDvQEifr~tp~-~KQvmmfsatlskeiRpvC~kFmQd-PmEi~vDd-E~KLtLHGLqQ~YvkLke~eKN 271 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPH-EKQVMMFSATLSKEIRPVCHKFMQD-PMEIFVDD-EAKLTLHGLQQYYVKLKENEKN 271 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcc-cceeeeeeeecchhhHHHHHhhhcC-chhhhccc-hhhhhhhhHHHHHHhhhhhhhh
Confidence 99887 6778899999999987 8999999999999999999987764 88887766 4567888999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 338 ~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
..+.++|.......++||+.+..... | ..+ ||||++++||+||-.
T Consensus 272 rkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 272 RKLNDLLDVLEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhhhhhhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCccc
Confidence 99999998888899999987755410 2 123 899999999999999
Q ss_pred CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH-HHHHHH
Q 007743 418 VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL-QFLRYL 465 (591)
Q Consensus 418 v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~-~~~~~l 465 (591)
|+.|||||+|.+.++|+||+|||||. |.+|.++.|++.++. ..+..+
T Consensus 317 vNi~~NYdmp~~~DtYlHrv~rAgrf-Gtkglaitfvs~e~da~iLn~v 364 (387)
T KOG0329|consen 317 VNIVFNYDMPEDSDTYLHRVARAGRF-GTKGLAITFVSDENDAKILNPV 364 (387)
T ss_pred ceeeeccCCCCCchHHHHHhhhhhcc-ccccceeehhcchhhHHHhchh
Confidence 99999999999999999999999996 578999999998543 444444
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.5e-47 Score=426.72 Aligned_cols=339 Identities=19% Similarity=0.242 Sum_probs=251.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCC--CCCcEEEEEcCChHH
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAP--RNGTGVIVICPTREL 186 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~--~~~~~~lil~PtreL 186 (591)
+++.+.+.+.+ +|..|||+|.++||.+++|+|++++||||||||++|++|+++.+....... .++.++|||+|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67777777666 799999999999999999999999999999999999999999987542211 346789999999999
Q ss_pred HHHHHHHHHHH-------H----hhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC--ccCCceE
Q 007743 187 AIQTHAVAKDL-------L----KYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF--IYKNLKC 252 (591)
Q Consensus 187 a~q~~~~~~~~-------~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~--~~~~l~~ 252 (591)
|.|++..+... + ... ++.+.+.+|+.........+.+.++|+|+||++|..++.... + .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~-~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK-FREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh-HHHHHhcCCE
Confidence 99999876532 2 112 567788889887777666677789999999999987775543 2 3689999
Q ss_pred EEEeCchhhhccccHHHHHHHH----HhCCCCCccEEEEeccCchhHHHHHHhhCC------CCCeEEEecCCCcccccC
Q 007743 253 LVIDEADRILEANFEEEMRQIM----KLLPKKDRQTALFSATQTKKVEDLARLSFQ------TTPVYIDVDDGRTKVTNE 322 (591)
Q Consensus 253 lVlDEah~l~~~~f~~~~~~i~----~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~------~~~~~i~~~~~~~~~~~~ 322 (591)
|||||+|.+.+..+...+..++ ...+. ..|++++|||+++. ..++..... ..+..+. ...... ..
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~-~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k--~~ 250 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGG-EFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVK--PF 250 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCC-CCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCc--cc
Confidence 9999999999766555544443 33323 68999999999863 344433221 1122211 110000 00
Q ss_pred CceeE-----EEecCch----hHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc------CCCeEeccCccCHHH
Q 007743 323 GLQQG-----YCVVPSA----KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI------QVDCFDIHGKQKQQK 387 (591)
Q Consensus 323 ~l~~~-----~~~~~~~----~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~ 387 (591)
.+... ....... .....+..++.. .+++||||+|+..++.++..|... +..+..+||+|++.+
T Consensus 251 ~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 251 DIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREV 328 (876)
T ss_pred eEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHH
Confidence 00000 0001111 122333344433 578999999999999999999863 467999999999999
Q ss_pred HHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 388 RTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 388 R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
|..+++.|++|..+|||||+++++|||+|+|++||+|+.|.++..|+||+|||||.++..+.++++...
T Consensus 329 R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999965544455555443
No 43
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-47 Score=397.87 Aligned_cols=371 Identities=22% Similarity=0.321 Sum_probs=277.6
Q ss_pred HHHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHH
Q 007743 115 RAIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAV 193 (591)
Q Consensus 115 ~~l~-~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~ 193 (591)
..|+ -+||..+++-|.++|..+++|+|+++.+|||+||++||++|++-. .| .+|||+|..+|+..+.+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G-~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EG-LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CC-CEEEECchHHHHHHHHHH
Confidence 4454 479999999999999999999999999999999999999999743 23 589999999999998888
Q ss_pred HHHHHhhcCCeEEEEEcCccchHH---HHHHhcC-CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc--cH
Q 007743 194 AKDLLKYHSQTVGLVIGGSARRGE---AERIVKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN--FE 267 (591)
Q Consensus 194 ~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~--f~ 267 (591)
++.. |+.+..+.+..+.... ...+..+ .++++.+|++|..--.... +..-.+.++|||||||+++|| |+
T Consensus 77 l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~-L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 77 LEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL-LKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH-HHhCCCceEEechHHHHhhcCCccC
Confidence 8765 4555555544333222 2223333 7999999999843211110 123468899999999999986 99
Q ss_pred HHHHHHHHhCCC-CCccEEEEeccCchhHHHH-HHhhCCCCCeEEEecCCCcccccCCceeEEEec-CchhHHHHHHHHH
Q 007743 268 EEMRQIMKLLPK-KDRQTALFSATQTKKVEDL-ARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRFILLYSFL 344 (591)
Q Consensus 268 ~~~~~i~~~l~~-~~~q~ll~SAT~~~~~~~l-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~~~k~~~l~~~l 344 (591)
+.+..+...... ++..++.+|||.++.+..- ........+..+.....+.+..... ... ....++..+.. +
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v-----~~~~~~~~q~~fi~~-~ 225 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKV-----VEKGEPSDQLAFLAT-V 225 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhh-----hhcccHHHHHHHHHh-h
Confidence 998887655432 2678999999999998654 4433334455555544444332221 111 12223332222 2
Q ss_pred HhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEc
Q 007743 345 KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQY 424 (591)
Q Consensus 345 ~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 424 (591)
.....+..||||.|++.++.+++.|...|+.+..|||+|+..+|..+.+.|..++..|+|||.+++||||.|+|++||||
T Consensus 226 ~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 226 LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 24556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccChHHHHHHHHHHHHHHHcchhHHHHHH
Q 007743 425 DPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNKSAK 504 (591)
Q Consensus 425 ~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (591)
|+|.|+++|+|.+|||||. |....|++|+++.|....+++.+...+ +......-..++..++... ...
T Consensus 306 ~lP~s~EsYyQE~GRAGRD-G~~a~aill~~~~D~~~~~~~i~~~~~------~~~~~~~~~~kl~~~~~~~-----e~~ 373 (590)
T COG0514 306 DLPGSIESYYQETGRAGRD-GLPAEAILLYSPEDIRWQRYLIEQSKP------DEEQKQIELAKLRQMIAYC-----ETQ 373 (590)
T ss_pred cCCCCHHHHHHHHhhccCC-CCcceEEEeeccccHHHHHHHHHhhcc------hHHHHHHHHHHHHHHHHhc-----ccc
Confidence 9999999999999999995 578999999999999988888765433 1111111123344443322 123
Q ss_pred HHHHHHHHHHhcCc
Q 007743 505 DAYRSYILAYNSHS 518 (591)
Q Consensus 505 ~~~~~~~~~y~~~~ 518 (591)
.|.+..+..|+.+.
T Consensus 374 ~crr~~ll~yfge~ 387 (590)
T COG0514 374 TCRRLVLLKYFGED 387 (590)
T ss_pred cchHHHHHHhcCcc
Confidence 48999999999876
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-46 Score=422.65 Aligned_cols=355 Identities=25% Similarity=0.294 Sum_probs=269.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.|++++|++.++++|.+.||..|+|+|.++++. ++.|+|++++||||||||++|.+|+++.+. ++.++|||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-------~~~kal~i~ 74 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-------RGGKALYIV 74 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-------cCCcEEEEe
Confidence 588999999999999999999999999999998 789999999999999999999999999874 356799999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
||++||.|+++.+..+.. .+..++.++|+...... ....++|+|+||+++..++++.. ..+.++++||+||+|.+
T Consensus 75 P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 75 PLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEVHLI 149 (737)
T ss_pred ChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECcccc
Confidence 999999999999997654 47888888888755432 23568999999999988887654 34688999999999999
Q ss_pred hccccHHHHHHHHHhCCC--CCccEEEEeccCchhHHHHHHhhCCC------CCe--EEEecCCCcccccCCceeEEEec
Q 007743 262 LEANFEEEMRQIMKLLPK--KDRQTALFSATQTKKVEDLARLSFQT------TPV--YIDVDDGRTKVTNEGLQQGYCVV 331 (591)
Q Consensus 262 ~~~~f~~~~~~i~~~l~~--~~~q~ll~SAT~~~~~~~l~~~~~~~------~~~--~i~~~~~~~~~~~~~l~~~~~~~ 331 (591)
.+.+++..+..++..+.. ...|++++|||+++. .+++.+.-.. .|+ ...+..... ..... .+.....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~-~~~~~-~~~~~~~ 226 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGA-IHFDD-SQREVEV 226 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCe-ecccc-ccccCCC
Confidence 988888888877665531 368999999999863 4455432111 011 111100000 00000 1111111
Q ss_pred Cc-hhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc------------------------------------CC
Q 007743 332 PS-AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI------------------------------------QV 374 (591)
Q Consensus 332 ~~-~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~------------------------------------~~ 374 (591)
.. ......+...+. .++++||||+|++.++.++..|... ..
T Consensus 227 ~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 227 PSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred ccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 11 223333444443 4689999999999999888777542 13
Q ss_pred CeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cC-----CCCChhhhhhhccccccCC-
Q 007743 375 DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YD-----PPDEPKEYIHRVGRTARGE- 444 (591)
Q Consensus 375 ~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~-----~P~s~~~y~qr~GR~gR~~- 444 (591)
++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~ 384 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGL 384 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 6889999999999999999999999999999999999999999999997 76 6899999999999999976
Q ss_pred CCcceEEEEeChhh-H-HHHH-HHHHcCCCccc
Q 007743 445 GARGNALLFLIPEE-L-QFLR-YLKAAKVPVKE 474 (591)
Q Consensus 445 ~~~g~~i~~~~~~e-~-~~~~-~l~~~~~~~~~ 474 (591)
+..|.+++++.+.+ . .+++ ++.....++.+
T Consensus 385 d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S 417 (737)
T PRK02362 385 DPYGEAVLLAKSYDELDELFERYIWADPEDVRS 417 (737)
T ss_pred CCCceEEEEecCchhHHHHHHHHHhCCCCceee
Confidence 24599999987753 2 2333 33334445544
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.1e-45 Score=409.56 Aligned_cols=338 Identities=22% Similarity=0.247 Sum_probs=264.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.|+++++++.+.+.|.+.||..|+|+|.++++. ++.|+|++++||||||||++|.+|+++.+.. .+.++|||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~------~~~~~l~l~ 75 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR------EGGKAVYLV 75 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh------cCCeEEEEe
Confidence 588999999999999999999999999999986 8899999999999999999999999988764 356899999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
|+++||.|+++.+..+. ..+..+..++|+...... ....++|+|+||+++..++.... ..++++++||+||+|.+
T Consensus 76 P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 76 PLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADEIHLI 150 (720)
T ss_pred ChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcCcCcc
Confidence 99999999999998764 457888889988765432 33568999999999988887654 45789999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc-------h
Q 007743 262 LEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS-------A 334 (591)
Q Consensus 262 ~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-------~ 334 (591)
.+.++...+..++..++. ..|++++|||+++ ..+++.+. .. ..+. ..............+.+..... .
T Consensus 151 ~~~~rg~~le~il~~l~~-~~qiI~lSATl~n-~~~la~wl-~~-~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 151 GSYDRGATLEMILTHMLG-RAQILGLSATVGN-AEELAEWL-NA-ELVV-SDWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred CCccchHHHHHHHHhcCc-CCcEEEEEccCCC-HHHHHHHh-CC-cccc-CCCCCCcceeeEecCCeeeccCcchhcchH
Confidence 988899999999999886 7899999999986 46666643 22 1111 0000000000001111111111 1
Q ss_pred hHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHH---------------------------------cCCCeEeccC
Q 007743 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRY---------------------------------IQVDCFDIHG 381 (591)
Q Consensus 335 ~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~lh~ 381 (591)
.....+...+. .++++||||+|++.++.++..|.. ...++..+||
T Consensus 226 ~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 226 SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 11233444454 367899999999999877655532 1346889999
Q ss_pred ccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE-------cCCCC-ChhhhhhhccccccCC-CCcceEEE
Q 007743 382 KQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ-------YDPPD-EPKEYIHRVGRTARGE-GARGNALL 452 (591)
Q Consensus 382 ~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~-------~~~P~-s~~~y~qr~GR~gR~~-~~~g~~i~ 452 (591)
+|++.+|..+.+.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|.||+|||||.| +..|.+++
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii 383 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAII 383 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEE
Confidence 999999999999999999999999999999999999999994 55544 5679999999999965 46799999
Q ss_pred EeChhh
Q 007743 453 FLIPEE 458 (591)
Q Consensus 453 ~~~~~e 458 (591)
++.+.+
T Consensus 384 ~~~~~~ 389 (720)
T PRK00254 384 VATTEE 389 (720)
T ss_pred EecCcc
Confidence 988755
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.3e-45 Score=394.77 Aligned_cols=315 Identities=18% Similarity=0.160 Sum_probs=244.2
Q ss_pred CCCCCCcHHHHHhhccccCCC-cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE-EcCChHHHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVPPLMVGK-DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV-ICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~-dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li-l~PtreLa~q~~~~~~~~ 197 (591)
.||. |||||.++||.++.|+ ++++++|||||||.+|.++++.. .. ....++.|| ++|||+||.|+++.+.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~----~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI----GAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc----cccccceEEEeCchHHHHHHHHHHHHHH
Confidence 5888 9999999999999998 67888999999999776555522 11 122344555 779999999999999999
Q ss_pred Hhhc-----------------------CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC---------
Q 007743 198 LKYH-----------------------SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF--------- 245 (591)
Q Consensus 198 ~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~--------- 245 (591)
++.+ ++.+..++||.+...++..+..+++|||+|+ +++.+.. +
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~-L~~gYg~~~~ 160 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRL-LFSGYGCGFK 160 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCc-cccccccccc
Confidence 8865 4778899999999999999999999999995 4444432 2
Q ss_pred -------ccCCceEEEEeCchhhhccccHHHHHHHHHhC--CC--CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC
Q 007743 246 -------IYKNLKCLVIDEADRILEANFEEEMRQIMKLL--PK--KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314 (591)
Q Consensus 246 -------~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l--~~--~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~ 314 (591)
.+.++++||||||| ++++|...+..|+..+ +. .++|+++||||++..+..+....+.. +..+.+..
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~-p~~i~V~~ 237 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAE-DYKHPVLK 237 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccC-Cceeeccc
Confidence 26789999999999 6789999999999975 33 13699999999999888877665543 55555433
Q ss_pred CCcccccCCceeEEEecCchhHHHHHHHHH---HhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHH--
Q 007743 315 GRTKVTNEGLQQGYCVVPSAKRFILLYSFL---KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRT-- 389 (591)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l---~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~-- 389 (591)
.......+.++ ..++...++..+...+ .....+++||||||++.++.+++.|...++ ..+||+|++.+|.
T Consensus 238 --~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~ 312 (844)
T TIGR02621 238 --KRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDL 312 (844)
T ss_pred --ccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhH
Confidence 22333444553 3444444443333222 123467899999999999999999998776 8899999999999
Q ss_pred ---HHHHHhhc----CC-------ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeC
Q 007743 390 ---TTFFDFCK----AE-------KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455 (591)
Q Consensus 390 ---~~~~~F~~----g~-------~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~ 455 (591)
.+++.|++ |. ..|||||+++++||||+. ++||++..| .++|+||+||+||.|...+..+.++.
T Consensus 313 ~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 313 VKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 78999987 44 689999999999999986 899998877 68999999999998754455566654
Q ss_pred h
Q 007743 456 P 456 (591)
Q Consensus 456 ~ 456 (591)
.
T Consensus 390 ~ 390 (844)
T TIGR02621 390 L 390 (844)
T ss_pred e
Confidence 3
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-43 Score=394.50 Aligned_cols=321 Identities=20% Similarity=0.226 Sum_probs=249.3
Q ss_pred CCCHHHHHHHH-HCCCCCCcHHHHHhhccccCC------CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 108 GLSQHTFRAIQ-DMGFQFMTQIQARAVPPLMVG------KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 108 ~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+..+.+.+. .++|. ||++|.++|+.++.+ +|++++||||||||.+|++|++..+.. +.+++|+
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------g~qvlvL 506 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------GKQVAVL 506 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------CCeEEEE
Confidence 45556656554 57884 999999999999875 799999999999999999999988753 5789999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHH---HHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEe
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA---ERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
+||++||.|+++.+.++....+..+..++|+....... ..+.. .++|||+||.. +. ..+.+.++++||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~--~~v~f~~L~llVID 580 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ--KDVKFKDLGLLIID 580 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh--CCCCcccCCEEEee
Confidence 99999999999999998888888888888876644332 23334 48999999942 22 22567899999999
Q ss_pred CchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhH
Q 007743 257 EADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336 (591)
Q Consensus 257 Eah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 336 (591)
|+|++. ......+..++. ..|+++||||+.+....+...... .+..+...+.. ...+..++.......-
T Consensus 581 Eahrfg-----v~~~~~L~~~~~-~~~vL~~SATpiprtl~~~l~g~~-d~s~I~~~p~~----R~~V~t~v~~~~~~~i 649 (926)
T TIGR00580 581 EEQRFG-----VKQKEKLKELRT-SVDVLTLSATPIPRTLHMSMSGIR-DLSIIATPPED----RLPVRTFVMEYDPELV 649 (926)
T ss_pred cccccc-----hhHHHHHHhcCC-CCCEEEEecCCCHHHHHHHHhcCC-CcEEEecCCCC----ccceEEEEEecCHHHH
Confidence 999852 234455566665 789999999988876665544443 35555543321 1123443333222111
Q ss_pred HHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCC
Q 007743 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLD 414 (591)
Q Consensus 337 ~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiD 414 (591)
...+...+ ..+++++|||+++..++.+++.|... ++++..+||+|++.+|..++.+|.+|+.+|||||+++++|||
T Consensus 650 ~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GID 727 (926)
T TIGR00580 650 REAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGID 727 (926)
T ss_pred HHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccc
Confidence 12222222 23678999999999999999999985 788999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCC-ChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 415 IPAVDWIVQYDPPD-EPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 415 ip~v~~VI~~~~P~-s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
+|++++||+++.|. +..+|+||+||+||. +..|.|++++.+
T Consensus 728 Ip~v~~VIi~~a~~~gls~l~Qr~GRvGR~-g~~g~aill~~~ 769 (926)
T TIGR00580 728 IPNANTIIIERADKFGLAQLYQLRGRVGRS-KKKAYAYLLYPH 769 (926)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhcCCCCC-CCCeEEEEEECC
Confidence 99999999999975 678999999999996 578999999865
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-43 Score=382.92 Aligned_cols=395 Identities=19% Similarity=0.254 Sum_probs=301.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcc-cCCCCCcEEEEEcCChHHH
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ-FAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~-~~~~~~~~~lil~PtreLa 187 (591)
|++.+.+.++.. |..|||.|.++||.+.+|+|+++.||||||||+++.+|++..|.... .....+..+|||+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999988 99999999999999999999999999999999999999999999873 3445678999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCC-CccCCceEEEEeCchhhhcccc
Q 007743 188 IQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKG-FIYKNLKCLVIDEADRILEANF 266 (591)
Q Consensus 188 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-~~~~~l~~lVlDEah~l~~~~f 266 (591)
..+...+...+..+++.+.+-+|++......+...+.+||+|+||+.|.-++..... -.+.+++++|+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999988888778888899999999999777755331 1378999999999999987554
Q ss_pred HHHHHHHHHhCCC--CCccEEEEeccCchhHHHHHHhhCCCC-C-eEEEecCCCcccccCCceeEEEec---------Cc
Q 007743 267 EEEMRQIMKLLPK--KDRQTALFSATQTKKVEDLARLSFQTT-P-VYIDVDDGRTKVTNEGLQQGYCVV---------PS 333 (591)
Q Consensus 267 ~~~~~~i~~~l~~--~~~q~ll~SAT~~~~~~~l~~~~~~~~-~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~ 333 (591)
+.++.--+..+.. ...|.+++|||..+. ..+++...... + .++.+..... .+...... ..
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~------~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKK------LEIKVISPVEDLIYDEELW 239 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCc------ceEEEEecCCccccccchh
Confidence 4444433333221 178999999999854 55566444432 3 3333332211 11111111 11
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcC-CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccC
Q 007743 334 AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ-VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARG 412 (591)
Q Consensus 334 ~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 412 (591)
...+..+..+++++ ..+|||+||+..++.++..|...+ ..+..+||.++.+.|..+.+.|++|+.+++|||..++-|
T Consensus 240 ~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 240 AALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 23445566666664 489999999999999999999987 899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH----HHcCCCccccccChHHHHHHHHH
Q 007743 413 LDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL----KAAKVPVKEYEFDQKKLANVQSH 488 (591)
Q Consensus 413 iDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 488 (591)
||+.+|+.||||+.|.++..++||+||+|+.-+.....+++....+ ..+..+ ....-.++...++...+.-+-++
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~-dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRD-DLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred cccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHH-HHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 9999999999999999999999999999996566677777777632 222211 11223444556666666555555
Q ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHhcC
Q 007743 489 LEKLVANNYYLNKSAKDAYRSYILAYNSH 517 (591)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 517 (591)
+..++.... .....+|+-.-++|...
T Consensus 397 ivg~~~~~~---~~~~~~y~~vrraypy~ 422 (814)
T COG1201 397 IVGMALEKV---WEVEEAYRVVRRAYPYA 422 (814)
T ss_pred HHHHHhhCc---CCHHHHHHHHHhccccc
Confidence 555443331 12345555555555543
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-43 Score=392.66 Aligned_cols=353 Identities=19% Similarity=0.209 Sum_probs=260.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
.|++++|++.+++.+...+|. ++++|.++++.+.+|+|++++||||||||+++.++++..+.. +.++||++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-------~~k~v~i~P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-------GLKSIYIVP 73 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-------CCcEEEEec
Confidence 578999999999999999997 999999999999999999999999999999999999988753 457999999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 183 TRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 183 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
+++||.|+++.+.++. ..+..+...+|+...... ..+.++|+|+||+++..++.+.. ..+.++++||+||||++.
T Consensus 74 ~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 74 LRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHIIG 148 (674)
T ss_pred hHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchhcc
Confidence 9999999999998764 457788888887654332 23568999999999988887654 457899999999999999
Q ss_pred ccccHHHHHHHHHhCC--CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccC--CceeEEEecCchhHHH
Q 007743 263 EANFEEEMRQIMKLLP--KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNE--GLQQGYCVVPSAKRFI 338 (591)
Q Consensus 263 ~~~f~~~~~~i~~~l~--~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~--~l~~~~~~~~~~~k~~ 338 (591)
+.++...+..++..+. ....|++++|||+++. .+++.+. .. +. +............ ...+.+........ .
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl-~~-~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~-~ 223 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWL-NA-SL-IKSNFRPVPLKLGILYRKRLILDGYERSQ-V 223 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHh-CC-Cc-cCCCCCCCCeEEEEEecCeeeeccccccc-c
Confidence 8888877777765432 1378999999999763 5566542 11 11 1100000000000 00001110011111 1
Q ss_pred HHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHc-------------------------CCCeEeccCccCHHHHHHH
Q 007743 339 LLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI-------------------------QVDCFDIHGKQKQQKRTTT 391 (591)
Q Consensus 339 ~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lh~~~~~~~R~~~ 391 (591)
.+..++.. ..++++||||++++.++.++..|... ..++..+||+|++.+|..+
T Consensus 224 ~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 224 DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 12233332 24689999999999999998888653 1357889999999999999
Q ss_pred HHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC---------CCCChhhhhhhccccccCC-CCcceEEEEeChhh-HH
Q 007743 392 FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD---------PPDEPKEYIHRVGRTARGE-GARGNALLFLIPEE-LQ 460 (591)
Q Consensus 392 ~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~---------~P~s~~~y~qr~GR~gR~~-~~~g~~i~~~~~~e-~~ 460 (591)
++.|++|.++|||||+++++|+|+|+..+|| ++ .|.++.+|.||+|||||.| +..|.+++++...+ ..
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~ 382 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYD 382 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHH
Confidence 9999999999999999999999999875554 33 3568889999999999975 34688888876543 44
Q ss_pred HHHH-HHHcCCCccc
Q 007743 461 FLRY-LKAAKVPVKE 474 (591)
Q Consensus 461 ~~~~-l~~~~~~~~~ 474 (591)
+++. +.....|+++
T Consensus 383 ~~~~~l~~~~~pi~S 397 (674)
T PRK01172 383 AAKKYLSGEPEPVIS 397 (674)
T ss_pred HHHHHHcCCCCceee
Confidence 4443 4344445443
No 50
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.1e-42 Score=395.45 Aligned_cols=284 Identities=21% Similarity=0.253 Sum_probs=227.0
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.|+ .||++|+.++|.++.|+|++++||||||||+ |.+|++..+.. .+.++|||+|||+||.|+++.+..++.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------KGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 577 8999999999999999999999999999996 55665554432 367899999999999999999999999
Q ss_pred hcCCeEEEEEcCccc-----hHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc----------
Q 007743 200 YHSQTVGLVIGGSAR-----RGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---------- 263 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~-----~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~---------- 263 (591)
..+..+..++|+... ......+. ..++|+|+||++|.+++.. +....+++||+||||+|++
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~~k~id~~l~ 225 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKSSKNIDKLLY 225 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhcccchhhHHH
Confidence 888888888777542 22223344 3589999999999998862 5566799999999999996
Q ss_pred -cccH-HHHHHHHHhCCC-----------------------CCccEEEEeccCchh-HHHHHHhhCCCCCeEEEecCCCc
Q 007743 264 -ANFE-EEMRQIMKLLPK-----------------------KDRQTALFSATQTKK-VEDLARLSFQTTPVYIDVDDGRT 317 (591)
Q Consensus 264 -~~f~-~~~~~i~~~l~~-----------------------~~~q~ll~SAT~~~~-~~~l~~~~~~~~~~~i~~~~~~~ 317 (591)
.||. +++..++..++. ...|+++||||+++. +... .+. .+..+.+.. .
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~-~ll~~~v~~--~ 299 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFR-ELLGFEVGS--P 299 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---Hhh-ccceEEecC--c
Confidence 6784 678888877753 157999999999875 3321 111 233344433 2
Q ss_pred ccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhh---HHHHHHHHHHcCCCeEeccCccCHHHHHHHHHH
Q 007743 318 KVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNS---VKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFD 394 (591)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~---~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~ 394 (591)
.....++.+.|..++ ++...|..++... +.++||||+++.. ++.+++.|...|+.+..+||+| .+.++.
T Consensus 300 ~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~ 371 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEK 371 (1176)
T ss_pred ccccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHH
Confidence 335567888887765 5666677777654 4689999999888 9999999999999999999999 234599
Q ss_pred hhcCCccEEEE----eCccccCCCCCC-CcEEEEcCCCC
Q 007743 395 FCKAEKGILLC----TDVAARGLDIPA-VDWIVQYDPPD 428 (591)
Q Consensus 395 F~~g~~~vLva----T~~~~~GiDip~-v~~VI~~~~P~ 428 (591)
|++|+.+|||| ||+++||||+|+ |++|||||+|.
T Consensus 372 F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 372 FEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999999 699999999999 89999999996
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.5e-42 Score=395.92 Aligned_cols=317 Identities=20% Similarity=0.228 Sum_probs=247.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhhccccCC------CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 111 QHTFRAIQDMGFQFMTQIQARAVPPLMVG------KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 111 ~~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
.+..+....++| .||++|.++|+.++.+ +|++++|+||+|||.+|+.++...+. .+.+++||+||+
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-------~g~qvlvLvPT~ 659 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-------NHKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------cCCeEEEEeCcH
Confidence 345556678899 6999999999999987 89999999999999999988876653 467899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHH---h-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 185 ELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI---V-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 185 eLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||.|+++.+.+.....++.+..++|+.+.......+ . ..++|||+||+.+ . ..+.+.++++|||||+|+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhh
Confidence 9999999999987777778888888887765554433 2 3589999999644 2 125578899999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCch-hHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA-KRFIL 339 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~k~~~ 339 (591)
+ |+. ....+..++. .+|+++||||+++....++...+.+ +..+...... ...+.+.+...... .+...
T Consensus 734 f---G~~--~~e~lk~l~~-~~qvLl~SATpiprtl~l~~~gl~d-~~~I~~~p~~----r~~v~~~~~~~~~~~~k~~i 802 (1147)
T PRK10689 734 F---GVR--HKERIKAMRA-DVDILTLTATPIPRTLNMAMSGMRD-LSIIATPPAR----RLAVKTFVREYDSLVVREAI 802 (1147)
T ss_pred c---chh--HHHHHHhcCC-CCcEEEEcCCCCHHHHHHHHhhCCC-cEEEecCCCC----CCCceEEEEecCcHHHHHHH
Confidence 7 332 2345566665 8999999999988887777766544 6666554321 12234333333221 22222
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
+..+. .+++++||||++..++.+++.|... +.++..+||+|++.+|..++..|++|+.+|||||+++++|||+|+
T Consensus 803 l~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~ 879 (1147)
T PRK10689 803 LREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 (1147)
T ss_pred HHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccccc
Confidence 33332 2578999999999999999999987 788999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCC-CChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 418 VDWIVQYDPP-DEPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 418 v~~VI~~~~P-~s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
|++||..+.. .+...|+||+||+||. +..|.|++++.+
T Consensus 880 v~~VIi~~ad~fglaq~~Qr~GRvGR~-g~~g~a~ll~~~ 918 (1147)
T PRK10689 880 ANTIIIERADHFGLAQLHQLRGRVGRS-HHQAYAWLLTPH 918 (1147)
T ss_pred CCEEEEecCCCCCHHHHHHHhhccCCC-CCceEEEEEeCC
Confidence 9999954432 2456799999999996 578999999854
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.5e-42 Score=377.83 Aligned_cols=326 Identities=20% Similarity=0.237 Sum_probs=242.1
Q ss_pred HHHHHHHCCCCCCcHHHHHhhccccCC------CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 113 TFRAIQDMGFQFMTQIQARAVPPLMVG------KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 113 l~~~l~~~~~~~~~~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
+...+..++| .||++|.++|+.+..+ .+++++||||||||++|++|++..+. +|.+++|++||++|
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-------~g~q~lilaPT~~L 322 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-------AGYQAALMAPTEIL 322 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEeccHHH
Confidence 3444456888 5999999999999876 48999999999999999999998774 36789999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEcCccchHH---HHHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 187 AIQTHAVAKDLLKYHSQTVGLVIGGSARRGE---AERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 187 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
|.|+++.+.+++...++.+.+++|+...... ...+.. .++|+|+||+.+.+. +.+.+++++|+||+|++.
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------v~~~~l~lvVIDE~Hrfg 396 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD------VEFHNLGLVIIDEQHRFG 396 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc------chhcccceEEEechhhhh
Confidence 9999999999999889999999999875433 233444 499999999877431 456889999999999863
Q ss_pred ccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH-HHHH
Q 007743 263 EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF-ILLY 341 (591)
Q Consensus 263 ~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~-~~l~ 341 (591)
. .....+..... ..++++||||+.+....+...... ....+.... .....+...+.......+. ..+.
T Consensus 397 ~-----~qr~~l~~~~~-~~~iL~~SATp~prtl~~~~~g~~-~~s~i~~~p----~~r~~i~~~~~~~~~~~~~~~~i~ 465 (681)
T PRK10917 397 V-----EQRLALREKGE-NPHVLVMTATPIPRTLAMTAYGDL-DVSVIDELP----PGRKPITTVVIPDSRRDEVYERIR 465 (681)
T ss_pred H-----HHHHHHHhcCC-CCCEEEEeCCCCHHHHHHHHcCCC-ceEEEecCC----CCCCCcEEEEeCcccHHHHHHHHH
Confidence 2 22223333333 578999999987765544432211 122222111 1112233333332222221 2222
Q ss_pred HHHHhcCCCcEEEEecCh--------hhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcccc
Q 007743 342 SFLKRNLSKKVMVFFSSC--------NSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAAR 411 (591)
Q Consensus 342 ~~l~~~~~~~~iVF~~s~--------~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 411 (591)
..+ ..+.+++|||+.+ ..+..+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 466 ~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 466 EEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 222 3467999999964 3456667777665 478999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCC-ChhhhhhhccccccCCCCcceEEEEeC-h---hhHHHHHHHH
Q 007743 412 GLDIPAVDWIVQYDPPD-EPKEYIHRVGRTARGEGARGNALLFLI-P---EELQFLRYLK 466 (591)
Q Consensus 412 GiDip~v~~VI~~~~P~-s~~~y~qr~GR~gR~~~~~g~~i~~~~-~---~e~~~~~~l~ 466 (591)
|||+|++++||++++|. ..+.|.||+||+||. +..|.|++++. + .....++.+.
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~-g~~g~~ill~~~~~~~~~~~rl~~~~ 602 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRG-AAQSYCVLLYKDPLSETARERLKIMR 602 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCC-CCceEEEEEECCCCChhHHHHHHHHH
Confidence 99999999999999997 578888999999995 57899999995 3 2334455553
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.1e-42 Score=390.73 Aligned_cols=345 Identities=19% Similarity=0.213 Sum_probs=243.1
Q ss_pred EEccCCCCchHHhHHHHHHHHHhccc------CCCCCcEEEEEcCChHHHHHHHHHHHHHHh------------hcCCeE
Q 007743 144 GAARTGSGKTLAFLIPAVELLYNAQF------APRNGTGVIVICPTRELAIQTHAVAKDLLK------------YHSQTV 205 (591)
Q Consensus 144 v~a~TGsGKTl~~~lp~l~~l~~~~~------~~~~~~~~lil~PtreLa~q~~~~~~~~~~------------~~~~~~ 205 (591)
|+||||||||++|.+|++..++.... ....+.++|||+|+++|+.|+++.++.... ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431 112468899999999999999998875321 246788
Q ss_pred EEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccH----HHHHHHHHhCCCCC
Q 007743 206 GLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFE----EEMRQIMKLLPKKD 281 (591)
Q Consensus 206 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~----~~~~~i~~~l~~~~ 281 (591)
...+|+.+.......+.+.++|||+||++|..+|.+.....++++++|||||+|.|.+..++ ..+..|...++. +
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~-~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT-S 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC-C
Confidence 88999988877666667789999999999988876543245899999999999999975433 445555555555 7
Q ss_pred ccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh--------------------HH-HHH
Q 007743 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--------------------RF-ILL 340 (591)
Q Consensus 282 ~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--------------------k~-~~l 340 (591)
.|+|++|||+++ .+++++......+..+...... ....+.. +..+.... .. ...
T Consensus 160 ~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~---r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 160 AQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAM---RHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCC---cccceEE-EEecCchhhccccccccccccchhhhhhhhHHHH
Confidence 899999999987 4666664433335444221111 1111221 11111100 00 011
Q ss_pred HHHHHh-cCCCcEEEEecChhhHHHHHHHHHHcC---------------------------------CCeEeccCccCHH
Q 007743 341 YSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYIQ---------------------------------VDCFDIHGKQKQQ 386 (591)
Q Consensus 341 ~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lh~~~~~~ 386 (591)
..++.. ....++||||||+..++.++..|+... ..+..+||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 122221 235789999999999999999887641 1256899999999
Q ss_pred HHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHH--
Q 007743 387 KRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRY-- 464 (591)
Q Consensus 387 ~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~-- 464 (591)
+|..+++.|++|+.++||||+.+++|||+++|++||||+.|.++.+|+||+|||||..+..+.++++.... ..++..
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r-~dlle~~~ 393 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTR-RDLVDSAV 393 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcH-HHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999644445555444432 222221
Q ss_pred -HH-HcCCCccccccChHHHHHHHHHHHHHHHc
Q 007743 465 -LK-AAKVPVKEYEFDQKKLANVQSHLEKLVAN 495 (591)
Q Consensus 465 -l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (591)
+. -..-.++....+...+.-+.+++..++..
T Consensus 394 ~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~ 426 (1490)
T PRK09751 394 IVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM 426 (1490)
T ss_pred HHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc
Confidence 11 12334555555555555555555555543
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.6e-42 Score=369.83 Aligned_cols=317 Identities=17% Similarity=0.186 Sum_probs=236.6
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCCchHH---------hHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 126 TQIQARAVPPLMVGKDVLGAARTGSGKTLA---------FLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 126 ~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~---------~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
..+|.++++.++.|++++++|+||||||.+ |++|.+..+.+.. ....+.+++|++|||+||.|+...+.+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 468999999999999999999999999998 4555555443211 112356899999999999999998887
Q ss_pred HHhh---cCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHH
Q 007743 197 LLKY---HSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQI 273 (591)
Q Consensus 197 ~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i 273 (591)
...+ .+..+.+.+||... .......+..+|+|+|++... ..++++++|||||||.+...+ +.+..+
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc--------cccccCCEEEccccccCccch--hHHHHH
Confidence 6655 35567888998763 222223346799999986311 246789999999999987765 455566
Q ss_pred HHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC----------chhHHHHHHHH
Q 007743 274 MKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP----------SAKRFILLYSF 343 (591)
Q Consensus 274 ~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~----------~~~k~~~l~~~ 343 (591)
+..++...+|+++||||++.++..+. .++. ++..+.+.. .+...+.+.|.... ...+... ...
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l~-~~~~-~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~-l~~ 386 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRIK-EFFP-NPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKNI-VTA 386 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHHH-HHhc-CCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHHH-HHH
Confidence 65554435699999999998888774 4554 466676642 12344566665332 1112222 233
Q ss_pred HHh---cCCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHh-hcCCccEEEEeCccccCCCCCC
Q 007743 344 LKR---NLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDF-CKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 344 l~~---~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F-~~g~~~vLvaT~~~~~GiDip~ 417 (591)
+.. ...+.+||||+++.+++.+++.|... ++.+..+||+|++. .++++.| ++|+.+||||||+++||||||+
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~ 464 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRN 464 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccC
Confidence 322 23568999999999999999999887 68999999999975 4666777 6899999999999999999999
Q ss_pred CcEEEEcC---CCC---------ChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 418 VDWIVQYD---PPD---------EPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 418 v~~VI~~~---~P~---------s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
|++||++| .|. |.++|+||+|||||. .+|.|+.|+++++...+..+
T Consensus 465 V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~--~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 465 ATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV--SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred eeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC--CCCeEEEEECHHHhHHHHHH
Confidence 99999999 665 888999999999997 47999999998776444433
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.5e-41 Score=373.11 Aligned_cols=317 Identities=21% Similarity=0.273 Sum_probs=236.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhhccccCC------CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 111 QHTFRAIQDMGFQFMTQIQARAVPPLMVG------KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 111 ~~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
..+.+.+..++| .||++|.++|+.++.+ .+.+++||||||||++|++|++..+. .+.+++|++||+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------~g~qvlilaPT~ 294 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------cCCcEEEECCHH
Confidence 345567778999 7999999999999876 36899999999999999999998764 367899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH---HHHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 185 ELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE---AERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 185 eLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||.|+++.+.+++...+..+.+++|+...... ...+.. .++|+|+||+.+.+. +.+.++++|||||+|+
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------VEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc------ccccccceEEEechhh
Confidence 999999999999998889999999998876542 233333 479999999987532 4568899999999998
Q ss_pred hhccccHHHHHHHHHhCCC-CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPK-KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~-~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 339 (591)
+... +...+...... ...++++||||+.+....+....... ...+.... .....+...+.. ...+ ..
T Consensus 369 fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~-~~~i~~~p----~~r~~i~~~~~~--~~~~-~~ 436 (630)
T TIGR00643 369 FGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLD-TSIIDELP----PGRKPITTVLIK--HDEK-DI 436 (630)
T ss_pred ccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcc-eeeeccCC----CCCCceEEEEeC--cchH-HH
Confidence 6432 22223333321 15789999999877554443221111 11111111 011122222222 2222 33
Q ss_pred HHHHHHh--cCCCcEEEEecCh--------hhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 340 LYSFLKR--NLSKKVMVFFSSC--------NSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 340 l~~~l~~--~~~~~~iVF~~s~--------~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
++..+.. ..+.+++|||+.+ ..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 437 ~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 437 VYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 3444433 2467899999876 3455667777653 67899999999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEEcCCCC-ChhhhhhhccccccCCCCcceEEEEe
Q 007743 408 VAARGLDIPAVDWIVQYDPPD-EPKEYIHRVGRTARGEGARGNALLFL 454 (591)
Q Consensus 408 ~~~~GiDip~v~~VI~~~~P~-s~~~y~qr~GR~gR~~~~~g~~i~~~ 454 (591)
++++|||+|++++||+++.|. +.+.|.||+||+||. +..|.|++++
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~-g~~g~~il~~ 563 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG-DHQSYCLLVY 563 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC-CCCcEEEEEE
Confidence 999999999999999999997 678888999999995 5789999999
No 56
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.4e-40 Score=387.78 Aligned_cols=330 Identities=20% Similarity=0.220 Sum_probs=257.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH
Q 007743 112 HTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT 190 (591)
Q Consensus 112 ~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~ 190 (591)
.+.+.+.+ +|| .||++|+.+||.++.|+|++++||||||||++++++++... ..+.++|||+||++|+.|+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-------~~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-------LKGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-------hcCCeEEEEECHHHHHHHH
Confidence 34455655 899 69999999999999999999999999999997666655432 1467899999999999999
Q ss_pred HHHHHHHHhhcC--CeEEEEEcCccchHHH---HHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-
Q 007743 191 HAVAKDLLKYHS--QTVGLVIGGSARRGEA---ERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE- 263 (591)
Q Consensus 191 ~~~~~~~~~~~~--~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~- 263 (591)
++.++.++...+ ..+..++|+.+..... ..+.. .++|+|+||++|.+++... ...++++||+||||+|++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceecccc
Confidence 999999988764 4556677887665443 23444 4899999999998877542 226799999999999986
Q ss_pred ----------cccHHHHHH----HHH----------------------hCCCCCcc-EEEEeccCchhHHHHHHhhCCCC
Q 007743 264 ----------ANFEEEMRQ----IMK----------------------LLPKKDRQ-TALFSATQTKKVEDLARLSFQTT 306 (591)
Q Consensus 264 ----------~~f~~~~~~----i~~----------------------~l~~~~~q-~ll~SAT~~~~~~~l~~~~~~~~ 306 (591)
+||.+++.. |+. .+++ ..| ++++|||+++.. ..... + ..
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ll~~SAT~~~r~-~~~~l-~-~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGN-KIGCLIVASATGKAKG-DRVKL-Y-RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCC-CccEEEEEecCCCchh-HHHHH-h-hc
Confidence 589888864 332 2233 445 677999999742 12222 2 23
Q ss_pred CeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhH---HHHHHHHHHcCCCeEeccCcc
Q 007743 307 PVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSV---KFHSELLRYIQVDCFDIHGKQ 383 (591)
Q Consensus 307 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~---~~l~~~L~~~~~~~~~lh~~~ 383 (591)
+..+.+... .....++.+.|..+....+ ..+..++... +..+||||+|++.+ +.+++.|...|+++..+||+
T Consensus 292 ~l~f~v~~~--~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~- 366 (1638)
T PRK14701 292 LLGFEVGSG--RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK- 366 (1638)
T ss_pred CeEEEecCC--CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-
Confidence 566666543 3455667888877765555 4677777665 57899999998864 89999999999999999995
Q ss_pred CHHHHHHHHHHhhcCCccEEEEe----CccccCCCCCC-CcEEEEcCCCC---Chhhhhhhc-------------ccccc
Q 007743 384 KQQKRTTTFFDFCKAEKGILLCT----DVAARGLDIPA-VDWIVQYDPPD---EPKEYIHRV-------------GRTAR 442 (591)
Q Consensus 384 ~~~~R~~~~~~F~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~~~P~---s~~~y~qr~-------------GR~gR 442 (591)
|..+++.|++|+..||||| ++++||||+|+ |++|||||+|. +.+.|.|.. ||+||
T Consensus 367 ----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~ 442 (1638)
T PRK14701 367 ----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELK 442 (1638)
T ss_pred ----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcc
Confidence 8899999999999999999 58999999999 99999999999 898888877 99999
Q ss_pred CCCCcceEEEEeChhhHHHHHHHH
Q 007743 443 GEGARGNALLFLIPEELQFLRYLK 466 (591)
Q Consensus 443 ~~~~~g~~i~~~~~~e~~~~~~l~ 466 (591)
.| ..+.+++.+...+..+++.+.
T Consensus 443 ~g-~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 443 EG-IPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred cC-CcchhHHHhHHHHHHHHHHHh
Confidence 64 577787777778877777663
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.1e-40 Score=364.72 Aligned_cols=306 Identities=19% Similarity=0.202 Sum_probs=236.0
Q ss_pred HHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH-HHhhcCCeEE
Q 007743 128 IQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD-LLKYHSQTVG 206 (591)
Q Consensus 128 ~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~-~~~~~~~~~~ 206 (591)
+-.+.+..+.+++++|++|+||||||++|.+|+++... .+.+++|+.|||++|.|++..+.. +....+..++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 33455666678899999999999999999999987752 245899999999999999998753 3334455666
Q ss_pred EEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-hhhccccHHH-HHHHHHhCCCCCccE
Q 007743 207 LVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD-RILEANFEEE-MRQIMKLLPKKDRQT 284 (591)
Q Consensus 207 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah-~l~~~~f~~~-~~~i~~~l~~~~~q~ 284 (591)
..+++... ....++|+|+|||+|++++... ..++++++|||||+| ++++.++.-. +..+...++. ..|+
T Consensus 79 y~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~-dlql 149 (819)
T TIGR01970 79 YRVRGENK------VSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE-DLKI 149 (819)
T ss_pred EEEccccc------cCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC-CceE
Confidence 55554332 2345799999999999999864 468999999999999 6777666433 3455566665 7999
Q ss_pred EEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH-----HHHHHHHHhcCCCcEEEEecCh
Q 007743 285 ALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF-----ILLYSFLKRNLSKKVMVFFSSC 359 (591)
Q Consensus 285 ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~iVF~~s~ 359 (591)
++||||++... + ..++.+ +..+.+... ...+.++|..+....++ ..+..++.. ..+.+|||++++
T Consensus 150 IlmSATl~~~~--l-~~~l~~-~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~ 219 (819)
T TIGR01970 150 LAMSATLDGER--L-SSLLPD-APVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQ 219 (819)
T ss_pred EEEeCCCCHHH--H-HHHcCC-CcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCH
Confidence 99999999764 3 334544 334444321 12356666666544332 233344433 368899999999
Q ss_pred hhHHHHHHHHHH---cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCC-------
Q 007743 360 NSVKFHSELLRY---IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDE------- 429 (591)
Q Consensus 360 ~~~~~l~~~L~~---~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s------- 429 (591)
.+++.++..|.. .++.++.+||+|++.+|..+++.|.+|..+||||||++++|||||+|++||++++|..
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 3788999999999999999999999999999999999999999999999999998852
Q ss_pred -----------hhhhhhhccccccCCCCcceEEEEeChhhHHH
Q 007743 430 -----------PKEYIHRVGRTARGEGARGNALLFLIPEELQF 461 (591)
Q Consensus 430 -----------~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~ 461 (591)
.++|.||+|||||. ..|.|+.|++.++...
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~--~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL--EPGVCYRLWSEEQHQR 340 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC--CCCEEEEeCCHHHHHh
Confidence 34689999999996 4799999999876543
No 58
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.9e-39 Score=371.74 Aligned_cols=291 Identities=20% Similarity=0.225 Sum_probs=221.9
Q ss_pred HHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHH
Q 007743 113 TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHA 192 (591)
Q Consensus 113 l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~ 192 (591)
+.+.+.......||++|+.++|.++.|+|++++||||||||+ |.+|++..+.. .+.++|||+|||+||.|+++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHH
Confidence 444555544457999999999999999999999999999997 77777766543 36789999999999999999
Q ss_pred HHHHHHhhcCCeEE---EEEcCccchHH---HHHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc--
Q 007743 193 VAKDLLKYHSQTVG---LVIGGSARRGE---AERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-- 263 (591)
Q Consensus 193 ~~~~~~~~~~~~~~---~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-- 263 (591)
.+..++...++.+. .++||.+.... ...+.+ +++|||+||++|.+++.... . +++++|+||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhcc
Confidence 99999887765543 45677765543 223343 49999999999998876522 2 799999999999998
Q ss_pred ---------cccHHH-HHHHHH----------------------hCCCCCcc--EEEEecc-CchhHHHHHHhhCCCCCe
Q 007743 264 ---------ANFEEE-MRQIMK----------------------LLPKKDRQ--TALFSAT-QTKKVEDLARLSFQTTPV 308 (591)
Q Consensus 264 ---------~~f~~~-~~~i~~----------------------~l~~~~~q--~ll~SAT-~~~~~~~l~~~~~~~~~~ 308 (591)
+||.++ +..++. .+++ .+| +++|||| .|..+.. ..+. .+.
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~~li~~SAT~~p~~~~~---~l~r-~ll 290 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPG-KKRGCLIVSSATGRPRGKRA---KLFR-ELL 290 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhh-ccCcEEEEEeCCCCccccHH---HHcc-ccc
Confidence 678764 445432 3343 444 5679999 5554432 1222 244
Q ss_pred EEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecCh---hhHHHHHHHHHHcCCCeEeccCccCH
Q 007743 309 YIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSC---NSVKFHSELLRYIQVDCFDIHGKQKQ 385 (591)
Q Consensus 309 ~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~---~~~~~l~~~L~~~~~~~~~lh~~~~~ 385 (591)
.+.+.. ......++.+.|..+.. +...|..+++.. +.++||||+++ +.++.++..|...|+++..+||++++
T Consensus 291 ~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 291 GFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred ceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 455543 23455677777775554 234566666554 57899999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhhcCCccEEEE----eCccccCCCCCC-CcEEEEcCCCC
Q 007743 386 QKRTTTFFDFCKAEKGILLC----TDVAARGLDIPA-VDWIVQYDPPD 428 (591)
Q Consensus 386 ~~R~~~~~~F~~g~~~vLva----T~~~~~GiDip~-v~~VI~~~~P~ 428 (591)
.+++.|++|+.+|||| ||+++||||+|+ |++|||||+|.
T Consensus 366 ----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 499999999999 89999999873
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9e-40 Score=362.93 Aligned_cols=304 Identities=19% Similarity=0.233 Sum_probs=234.5
Q ss_pred HHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH-HHhhcCCeEE
Q 007743 128 IQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD-LLKYHSQTVG 206 (591)
Q Consensus 128 ~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~-~~~~~~~~~~ 206 (591)
+-.+.+..+.++++++++|+||||||++|.+|+++... ...+++|+.|||++|.|++..+.. +....+..++
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 33455666678899999999999999999999887531 234799999999999999998754 4444566777
Q ss_pred EEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh-hhccccH-HHHHHHHHhCCCCCccE
Q 007743 207 LVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR-ILEANFE-EEMRQIMKLLPKKDRQT 284 (591)
Q Consensus 207 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~-l~~~~f~-~~~~~i~~~l~~~~~q~ 284 (591)
..+++..... ...+|+|+|||+|++++... ..++++++|||||+|. .++.++. ..+..++..++. ..|+
T Consensus 82 y~vr~~~~~~------~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~-~lql 152 (812)
T PRK11664 82 YRMRAESKVG------PNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD-DLKL 152 (812)
T ss_pred EEecCccccC------CCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc-cceE
Confidence 7776654332 34689999999999998864 4689999999999995 5554432 233455666665 7899
Q ss_pred EEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHH-----HHHHHHHhcCCCcEEEEecCh
Q 007743 285 ALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI-----LLYSFLKRNLSKKVMVFFSSC 359 (591)
Q Consensus 285 ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~iVF~~s~ 359 (591)
++||||++.. .+. .++.+ +..+.+... ...+.+.|...+...++. .+..++.. ..+.+|||+++.
T Consensus 153 ilmSATl~~~--~l~-~~~~~-~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~ 222 (812)
T PRK11664 153 LIMSATLDND--RLQ-QLLPD-APVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGV 222 (812)
T ss_pred EEEecCCCHH--HHH-HhcCC-CCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCH
Confidence 9999999865 233 34444 334444321 123566676666544442 33344433 368999999999
Q ss_pred hhHHHHHHHHHH---cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCC--------
Q 007743 360 NSVKFHSELLRY---IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD-------- 428 (591)
Q Consensus 360 ~~~~~l~~~L~~---~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~-------- 428 (591)
.+++.+++.|.. .++.+..+||+|++.+|..++..|.+|+.+||||||++++|||||+|++||++++|.
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999987 578899999999999999999999999999999999999999999999999988775
Q ss_pred ----------ChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 429 ----------EPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 429 ----------s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
|.++|.||+|||||. ..|.|+.|+++.+.
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~--~~G~cyrL~t~~~~ 341 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL--EPGICLHLYSKEQA 341 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC--CCcEEEEecCHHHH
Confidence 335899999999996 47999999998765
No 60
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=322.45 Aligned_cols=277 Identities=26% Similarity=0.468 Sum_probs=218.9
Q ss_pred cEEEEEcCChHHHHHHHHHHHHHHhhcC---CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCce
Q 007743 175 TGVIVICPTRELAIQTHAVAKDLLKYHS---QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLK 251 (591)
Q Consensus 175 ~~~lil~PtreLa~q~~~~~~~~~~~~~---~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~ 251 (591)
+.++|+-|+|+||.|.++.+++|-.++. .+..+++||.....+...+..+.+|+|+||+||.+.+.... +.++.++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~-~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL-VTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc-eeeeeeE
Confidence 4579999999999999998888866553 34457889999999999999999999999999999997765 6789999
Q ss_pred EEEEeCchhhhccccHHHHHHHHHhCCC-----CCccEEEEeccCch-hHHHHHHhhCCCCCeEEEecCCCcccccCCce
Q 007743 252 CLVIDEADRILEANFEEEMRQIMKLLPK-----KDRQTALFSATQTK-KVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQ 325 (591)
Q Consensus 252 ~lVlDEah~l~~~~f~~~~~~i~~~l~~-----~~~q~ll~SAT~~~-~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~ 325 (591)
++|+||||.++..++.+.+..+...+|. ...|.+++|||+.. ++..+....+ ..|..+++.... ..++.+.
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervm-hfptwVdLkgeD--~vpetvH 442 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVM-HFPTWVDLKGED--LVPETVH 442 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhc-cCceeEeccccc--ccchhhc
Confidence 9999999999999999999999888875 35799999999764 2333333222 235555543321 1112121
Q ss_pred eEEEec-C---------------------------------chhHH-----HHHHHHHHhcCCCcEEEEecChhhHHHHH
Q 007743 326 QGYCVV-P---------------------------------SAKRF-----ILLYSFLKRNLSKKVMVFFSSCNSVKFHS 366 (591)
Q Consensus 326 ~~~~~~-~---------------------------------~~~k~-----~~l~~~l~~~~~~~~iVF~~s~~~~~~l~ 366 (591)
+....+ + ..... .+-...++.+...++||||.|+..|+.+.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 111111 0 00111 11233445555679999999999999999
Q ss_pred HHHHHcC---CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccC
Q 007743 367 ELLRYIQ---VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARG 443 (591)
Q Consensus 367 ~~L~~~~---~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~ 443 (591)
.++.+.| +.|+.+||+..+.+|...++.|..+..+.|||||+++|||||.++-++||..+|.+...|+||+||.||+
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9999875 5799999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcceEEEEeCh
Q 007743 444 EGARGNALLFLIP 456 (591)
Q Consensus 444 ~~~~g~~i~~~~~ 456 (591)
. +-|.+|.++..
T Consensus 603 e-rmglaislvat 614 (725)
T KOG0349|consen 603 E-RMGLAISLVAT 614 (725)
T ss_pred h-hcceeEEEeec
Confidence 5 67999988764
No 61
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-40 Score=321.29 Aligned_cols=334 Identities=20% Similarity=0.290 Sum_probs=244.3
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHhhccccCC-CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH
Q 007743 112 HTFRAIQD-MGFQFM-TQIQARAVPPLMVG-KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188 (591)
Q Consensus 112 ~l~~~l~~-~~~~~~-~~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~ 188 (591)
.+.++|++ +|+..+ ++.|.+++..+..+ +||.|++|||+||+|||+||.|.+ +...||++|..+|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------CCeEEEehHHHHHHH
Confidence 45566654 677765 89999999988865 699999999999999999999854 347899999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEcCccchHHH------HHHhcCCCEEEeCchHH-----HHHHhcCCCCccCCceEEEEeC
Q 007743 189 QTHAVAKDLLKYHSQTVGLVIGGSARRGEA------ERIVKGVNLLVATPGRL-----LDHLQNTKGFIYKNLKCLVIDE 257 (591)
Q Consensus 189 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~------~~l~~~~~Iiv~Tp~~L-----~~~l~~~~~~~~~~l~~lVlDE 257 (591)
.+.+.+.++- ..+..+....+..+.. ........+++.||+.. ..+|+.- ..-..+.|+|+||
T Consensus 76 DQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L--~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 76 DQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL--ANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH--hhhceeeeEEech
Confidence 9888887762 2222222222221111 11123468999999864 2222221 1224578999999
Q ss_pred chhhhcc--ccHHHHHHHHHhCCC-CCccEEEEeccCchhHHH-HH-HhhCCCCCeEEEecC-CCcccccCCceeEEEec
Q 007743 258 ADRILEA--NFEEEMRQIMKLLPK-KDRQTALFSATQTKKVED-LA-RLSFQTTPVYIDVDD-GRTKVTNEGLQQGYCVV 331 (591)
Q Consensus 258 ah~l~~~--~f~~~~~~i~~~l~~-~~~q~ll~SAT~~~~~~~-l~-~~~~~~~~~~i~~~~-~~~~~~~~~l~~~~~~~ 331 (591)
||++++| +|++++..+-..... ....-+.++||.++.+.+ +. .+.+.+ |+-+.-.+ .+.+..+...-..+
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~-PVAiFkTP~FR~NLFYD~~~K~~--- 225 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRN-PVAIFKTPTFRDNLFYDNHMKSF--- 225 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcC-cHHhccCcchhhhhhHHHHHHHH---
Confidence 9999985 588888776543322 257789999999999954 33 334444 54332211 11111111000000
Q ss_pred CchhHHHHHHHHHHhc-------------CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcC
Q 007743 332 PSAKRFILLYSFLKRN-------------LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398 (591)
Q Consensus 332 ~~~~k~~~l~~~l~~~-------------~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g 398 (591)
-.+-+..|.++-... ..+-.||||.|++.|++++..|...|++...||+++...+|..+.+.|.++
T Consensus 226 -I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~ 304 (641)
T KOG0352|consen 226 -ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN 304 (641)
T ss_pred -hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC
Confidence 011222333333221 245789999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 399 ~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
+..||+||..+++|+|.|+|++||||++|.+.+.|+|..|||||. |....|-++|+.+|...+++|..
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRD-Gk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRD-GKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccC-CCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999995 57899999999999999988854
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.2e-39 Score=343.73 Aligned_cols=323 Identities=21% Similarity=0.236 Sum_probs=249.1
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.+|. .|+++|..++|.++.|+ |+.+.||+|||++|.+|++...+ .|..++||+||++||.|.++++..+.
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 3565 68999999999999999 99999999999999999997754 36789999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCCC------------------------CccCCceEE
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTKG------------------------FIYKNLKCL 253 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~------------------------~~~~~l~~l 253 (591)
.++++.+++++||.+. +.+....+++|+|+|...| .++|+..-. ...+.+.+.
T Consensus 169 ~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 9999999999999753 3455566899999999987 666654421 124668899
Q ss_pred EEeCchhhh-c--------------c---ccHHHHHHHHHhCCC------------------------------------
Q 007743 254 VIDEADRIL-E--------------A---NFEEEMRQIMKLLPK------------------------------------ 279 (591)
Q Consensus 254 VlDEah~l~-~--------------~---~f~~~~~~i~~~l~~------------------------------------ 279 (591)
|+||+|.++ | . .+......+...+..
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999754 1 0 010111111100000
Q ss_pred --------------------------------------------------------------------------------
Q 007743 280 -------------------------------------------------------------------------------- 279 (591)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (591)
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence
Q ss_pred CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhc--CCCcEEEEec
Q 007743 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRN--LSKKVMVFFS 357 (591)
Q Consensus 280 ~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~--~~~~~iVF~~ 357 (591)
....+.+||||++....++...+... +..|..... . .....+.++.++...|...|...+... .+.++||||+
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~-vv~IPt~kp--~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLP-VVRIPTNRP--S--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCC-eEEeCCCCC--c--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01356779999988777777765543 554443321 1 122334456677788998998888763 3578999999
Q ss_pred ChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCC---CCc-----EEEEcCCCCC
Q 007743 358 SCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP---AVD-----WIVQYDPPDE 429 (591)
Q Consensus 358 s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~~~P~s 429 (591)
|+..++.++..|...|+++..+||+++ +|...+..|..+...|+||||+++||+||+ +|. +||+|++|.+
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s 559 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS 559 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC
Confidence 999999999999999999999999865 455555566666667999999999999999 676 9999999999
Q ss_pred hhhhhhhccccccCCCCcceEEEEeChhhHHH
Q 007743 430 PKEYIHRVGRTARGEGARGNALLFLIPEELQF 461 (591)
Q Consensus 430 ~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~ 461 (591)
...|+||+|||||.| .+|.+++|++.+|.-+
T Consensus 560 ~r~y~hr~GRTGRqG-~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 560 ARIDRQLAGRCGRQG-DPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHHHhcccccCCC-CCeEEEEEechhHHHH
Confidence 999999999999975 7899999999877543
No 63
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-38 Score=351.57 Aligned_cols=334 Identities=19% Similarity=0.239 Sum_probs=259.1
Q ss_pred HHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 116 AIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 116 ~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
....+|+..+++-|.++|..++.|+|++|.+|||+||++||+||++-. +...|||+|.++|+..+...+.
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------CCceEEeccHHHHHHHHHHhhh
Confidence 334789999999999999999999999999999999999999998732 4478999999999887665553
Q ss_pred HHHhhcCCeEEEEEcCccch---HHHHHHhc---CCCEEEeCchHHHHHHhcCC-CCccCC---ceEEEEeCchhhhc--
Q 007743 196 DLLKYHSQTVGLVIGGSARR---GEAERIVK---GVNLLVATPGRLLDHLQNTK-GFIYKN---LKCLVIDEADRILE-- 263 (591)
Q Consensus 196 ~~~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~~Iiv~Tp~~L~~~l~~~~-~~~~~~---l~~lVlDEah~l~~-- 263 (591)
..++....+.++.... .....+.. .++|++.||+++...-.-.. ...+.. +.++||||||+++.
T Consensus 326 ----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 ----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred ----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3456666666665553 22333433 37999999998743211110 012333 88999999999998
Q ss_pred cccHHHHHHHHHhCCC-CCccEEEEeccCchhHH-HHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHH
Q 007743 264 ANFEEEMRQIMKLLPK-KDRQTALFSATQTKKVE-DLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341 (591)
Q Consensus 264 ~~f~~~~~~i~~~l~~-~~~q~ll~SAT~~~~~~-~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~ 341 (591)
++|++.+..+.....+ ....++.+|||.+..+. +++...-..++.++.....+ .++...+..-........+.
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR-----~NL~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNR-----PNLKYEVSPKTDKDALLDIL 476 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCC-----CCceEEEEeccCccchHHHH
Confidence 5588988887655443 24689999999999884 44443333345554443322 33332222222223333333
Q ss_pred HHHH-hcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 342 SFLK-RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 342 ~~l~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
..++ ......+||||.++.+|+.+...|...++.+..||++|+..+|..+...|..++++|+|||-++++|||.|+|++
T Consensus 477 ~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ 556 (941)
T KOG0351|consen 477 EESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRF 556 (941)
T ss_pred HHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeE
Confidence 3333 456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcC
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAK 469 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~ 469 (591)
||||++|.+.+.|+|.+|||||- |....|++|+...|...++.+...+
T Consensus 557 ViH~~lPks~E~YYQE~GRAGRD-G~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 557 VIHYSLPKSFEGYYQEAGRAGRD-GLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred EEECCCchhHHHHHHhccccCcC-CCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999995 5789999999999999998887766
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.1e-38 Score=330.85 Aligned_cols=301 Identities=20% Similarity=0.210 Sum_probs=211.4
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch-----
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR----- 215 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~----- 215 (591)
|++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.. ..++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-----~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-----QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-----CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhcc
Confidence 68999999999999999999987643 2456899999999999999999888643 2344444433210
Q ss_pred -------HHHHHH------hcCCCEEEeCchHHHHHHhcCCC---Ccc--CCceEEEEeCchhhhccccHHHHHHHHHhC
Q 007743 216 -------GEAERI------VKGVNLLVATPGRLLDHLQNTKG---FIY--KNLKCLVIDEADRILEANFEEEMRQIMKLL 277 (591)
Q Consensus 216 -------~~~~~l------~~~~~Iiv~Tp~~L~~~l~~~~~---~~~--~~l~~lVlDEah~l~~~~f~~~~~~i~~~l 277 (591)
...... .-..+|+|+||++++..+..... +.+ -..++|||||||.+.+.++.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 000011 11368999999999887765210 111 123789999999998865543 66666666
Q ss_pred CCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEec--CchhHHHHHHHHHHh-cCCCcEEE
Q 007743 278 PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV--PSAKRFILLYSFLKR-NLSKKVMV 354 (591)
Q Consensus 278 ~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~--~~~~k~~~l~~~l~~-~~~~~~iV 354 (591)
+....|+++||||+|..+..+....... +....... .. ......+.+..+ ....+...+..++.. ..++++||
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~-~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lV 227 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYV-EFNEPLDL--KE-ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAI 227 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCc-ccccCCCC--cc-ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEE
Confidence 5447899999999998777766543221 11111110 00 000112222211 122344455555543 34689999
Q ss_pred EecChhhHHHHHHHHHHcCC--CeEeccCccCHHHHHHH----HHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCC
Q 007743 355 FFSSCNSVKFHSELLRYIQV--DCFDIHGKQKQQKRTTT----FFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD 428 (591)
Q Consensus 355 F~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~R~~~----~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~ 428 (591)
||+|++.++.++..|...+. .+..+||++++.+|... ++.|++|+..|||||+++++|+|++ +++||++..|
T Consensus 228 f~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~- 305 (358)
T TIGR01587 228 IVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP- 305 (358)
T ss_pred EECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC-
Confidence 99999999999999988765 49999999999999764 8899999999999999999999995 8999999877
Q ss_pred ChhhhhhhccccccCCCCcc---eEEEEeChh
Q 007743 429 EPKEYIHRVGRTARGEGARG---NALLFLIPE 457 (591)
Q Consensus 429 s~~~y~qr~GR~gR~~~~~g---~~i~~~~~~ 457 (591)
+++|+||+||+||.|...| .+++|....
T Consensus 306 -~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 -IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred -HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 7899999999999764333 677776543
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.8e-38 Score=340.59 Aligned_cols=322 Identities=19% Similarity=0.240 Sum_probs=240.1
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.+|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+ .|..|+|++||++||.|.++++..+.
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-------~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-------EGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-------cCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 3576 79999999999999887 99999999999999999985544 47789999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh-cc-------
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL-EA------- 264 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~~------- 264 (591)
.++++.++++.|+.+...+.+ ...+++|+|+||++| .++|...- ...++.+.++|+||||.|+ |.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 999999999999988544433 335699999999999 66665432 1346889999999999865 20
Q ss_pred --------ccHHHHHHHHHhCCCC-------C------------------------------------------------
Q 007743 265 --------NFEEEMRQIMKLLPKK-------D------------------------------------------------ 281 (591)
Q Consensus 265 --------~f~~~~~~i~~~l~~~-------~------------------------------------------------ 281 (591)
.+...+..+...+... .
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 1122222333322210 0
Q ss_pred -------------------------------------------------------------ccEEEEeccCchhHHHHHH
Q 007743 282 -------------------------------------------------------------RQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 282 -------------------------------------------------------------~q~ll~SAT~~~~~~~l~~ 300 (591)
..+.++|+|....-.++..
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~ 382 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH
Confidence 1223333333322223322
Q ss_pred hhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEe
Q 007743 301 LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD 378 (591)
Q Consensus 301 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 378 (591)
.+-. .++.+...... ..... ...+.+....|...+...+.. ....++||||+|+..++.++..|...++++..
T Consensus 383 ~Y~l---~v~~IPt~kp~-~r~d~-~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 383 VYNM---EVVQIPTNRPI-IRIDY-PDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HhCC---cEEECCCCCCc-ccccC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 2110 11122111110 00111 112334567788888888865 35789999999999999999999999999999
Q ss_pred ccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCC---CCCc-----EEEEcCCCCChhhhhhhccccccCCCCcceE
Q 007743 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDI---PAVD-----WIVQYDPPDEPKEYIHRVGRTARGEGARGNA 450 (591)
Q Consensus 379 lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDi---p~v~-----~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~ 450 (591)
+||++.+.++..+...+..| .|+|||++++||+|| |+|. +||+|++|.+...|+||+|||||.| .+|.+
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G-~~G~s 534 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG-DPGSS 534 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC-CCeeE
Confidence 99999998888888877766 799999999999999 6998 9999999999999999999999975 78999
Q ss_pred EEEeChhhH
Q 007743 451 LLFLIPEEL 459 (591)
Q Consensus 451 i~~~~~~e~ 459 (591)
+.|++.+|.
T Consensus 535 ~~~is~eD~ 543 (790)
T PRK09200 535 QFFISLEDD 543 (790)
T ss_pred EEEEcchHH
Confidence 999998764
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.6e-38 Score=338.08 Aligned_cols=314 Identities=15% Similarity=0.180 Sum_probs=226.5
Q ss_pred CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 122 FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 122 ~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+.. ....++|||+||++|+.|+.+.+.+++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-----cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 357999999999999999999999999999999865422 22222 123489999999999999999999887554
Q ss_pred CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCC
Q 007743 202 SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281 (591)
Q Consensus 202 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~ 281 (591)
...+..+.+|.... .+.+|+|+||+++.+... ..+.++++||+||||++... .+..++..+++ .
T Consensus 186 ~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~-~ 249 (501)
T PHA02558 186 REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDN-C 249 (501)
T ss_pred ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhc-c
Confidence 44555666665433 347999999999976442 23578999999999998764 45667777765 6
Q ss_pred ccEEEEeccCchhHHHHHHh--hCCCCCeEEEecC-------------------CCcccccCC-----ceeEE-EecCch
Q 007743 282 RQTALFSATQTKKVEDLARL--SFQTTPVYIDVDD-------------------GRTKVTNEG-----LQQGY-CVVPSA 334 (591)
Q Consensus 282 ~q~ll~SAT~~~~~~~l~~~--~~~~~~~~i~~~~-------------------~~~~~~~~~-----l~~~~-~~~~~~ 334 (591)
+++++||||++......... .+. |....+.. ......... ....+ ......
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG--~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFG--DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHT 327 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhC--CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccH
Confidence 78999999987543211111 111 21111110 000000000 00000 011223
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe-Ccccc
Q 007743 335 KRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT-DVAAR 411 (591)
Q Consensus 335 ~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT-~~~~~ 411 (591)
.+...+..++.. ..+.+++|||.+.++++.+++.|...+.++..+||+|++.+|..+++.|++|...||||| +++++
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST 407 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc
Confidence 344444444332 235789999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 412 GLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 412 GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
|+|+|++++||++.+|.+...|+||+||++|.++.+..++++-.-++.
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 999999999999999999999999999999976555556555333333
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7e-37 Score=329.44 Aligned_cols=321 Identities=16% Similarity=0.215 Sum_probs=229.6
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|. .|+++|......+..| .+++++||+|||++|++|++...+ .+..++||+|+++||.|+++++..+..
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL-------~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL-------TGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh-------cCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 454 4566665555555555 799999999999999999876554 355699999999999999999999999
Q ss_pred hcCCeEEEEEcCcc---chHHHHHHhcCCCEEEeCchHH-HHHHhcC-----CCCccCCceEEEEeCchhhhccc-----
Q 007743 200 YHSQTVGLVIGGSA---RRGEAERIVKGVNLLVATPGRL-LDHLQNT-----KGFIYKNLKCLVIDEADRILEAN----- 265 (591)
Q Consensus 200 ~~~~~~~~~~gg~~---~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~-----~~~~~~~l~~lVlDEah~l~~~~----- 265 (591)
++++.+++++++.. ...+......+++|+|+||++| .++|... ....++.+.++|+||||.|+-..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999998887632 2223344446799999999999 5666432 12446889999999999885311
Q ss_pred -----------cHHHHHHHHHhCCCC------------------------------------------------------
Q 007743 266 -----------FEEEMRQIMKLLPKK------------------------------------------------------ 280 (591)
Q Consensus 266 -----------f~~~~~~i~~~l~~~------------------------------------------------------ 280 (591)
+...+..+...+...
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 112222233322210
Q ss_pred --------------------------------------------------------------CccEEEEeccCchhHHHH
Q 007743 281 --------------------------------------------------------------DRQTALFSATQTKKVEDL 298 (591)
Q Consensus 281 --------------------------------------------------------------~~q~ll~SAT~~~~~~~l 298 (591)
...+.+||+|......++
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 012333444433333333
Q ss_pred HHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCe
Q 007743 299 ARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDC 376 (591)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~ 376 (591)
...+-. . ++.+......... . ....+.+....|...+...+.. ..+.++||||+|+..++.++..|...|+++
T Consensus 377 ~~iY~l--~-v~~IPt~kp~~r~-d-~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 377 IETYSL--S-VVKIPTNKPIIRI-D-YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred HHHhCC--C-EEEcCCCCCeeee-e-CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 332111 1 1111111111000 0 1113444566788888887765 457899999999999999999999999999
Q ss_pred EeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCC---------CCcEEEEcCCCCChhhhhhhccccccCCCCc
Q 007743 377 FDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP---------AVDWIVQYDPPDEPKEYIHRVGRTARGEGAR 447 (591)
Q Consensus 377 ~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip---------~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~ 447 (591)
..+||++.+.+|..+...|..| .|+||||+++||+||| ++.+|++|++|..... +||+|||||.| .+
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG-~~ 527 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG-DP 527 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC-Cc
Confidence 9999999999988887777766 6999999999999999 9999999999988766 99999999975 78
Q ss_pred ceEEEEeChhhH
Q 007743 448 GNALLFLIPEEL 459 (591)
Q Consensus 448 g~~i~~~~~~e~ 459 (591)
|.++.|++.+|.
T Consensus 528 G~s~~~is~eD~ 539 (762)
T TIGR03714 528 GSSQFFVSLEDD 539 (762)
T ss_pred eeEEEEEccchh
Confidence 999999998774
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7.2e-37 Score=306.72 Aligned_cols=339 Identities=21% Similarity=0.254 Sum_probs=272.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
....++|.+++.+.+.|+..|++.+.|+|..++.. ++.|.|.+|.++|+||||+..-++-+..++. .|.+.|+
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------~g~Kmlf 266 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------GGKKMLF 266 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh------CCCeEEE
Confidence 34678899999999999999999999999999986 7899999999999999999999888888775 4778999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH----HHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEE
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE----RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVI 255 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~----~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVl 255 (591)
++|..+||+|-|+.+++-...+++.+.+-+|......... .....+||||+|++.+-.+|+.. -.+.++..|||
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVI 344 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVI 344 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEe
Confidence 9999999999999999888888888888887654433211 12234799999999997777665 46789999999
Q ss_pred eCchhhhccccHHHHHHHHHhCCC--CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC-
Q 007743 256 DEADRILEANFEEEMRQIMKLLPK--KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP- 332 (591)
Q Consensus 256 DEah~l~~~~f~~~~~~i~~~l~~--~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~- 332 (591)
||+|.+-+...++.+.-++..+.. +..|.+.+|||..+. ..+++.. ....+... . .+..+..+..++.
T Consensus 345 DEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l-~a~lV~y~--~-----RPVplErHlvf~~~ 415 (830)
T COG1202 345 DEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKL-GAKLVLYD--E-----RPVPLERHLVFARN 415 (830)
T ss_pred eeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHh-CCeeEeec--C-----CCCChhHeeeeecC
Confidence 999988875555555555443322 268999999999877 4555533 22232221 1 2233444455554
Q ss_pred chhHHHHHHHHHHh--------cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEE
Q 007743 333 SAKRFILLYSFLKR--------NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILL 404 (591)
Q Consensus 333 ~~~k~~~l~~~l~~--------~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLv 404 (591)
...|...+..+.+. ...++||||++|+..|..++..|...|+++.+||++|+..+|..+...|.++...++|
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 67788887777754 2368999999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccCCCCCCCcEEEE---cC-CCCChhhhhhhccccccCC-CCcceEEEEeCh
Q 007743 405 CTDVAARGLDIPAVDWIVQ---YD-PPDEPKEYIHRVGRTARGE-GARGNALLFLIP 456 (591)
Q Consensus 405 aT~~~~~GiDip~v~~VI~---~~-~P~s~~~y~qr~GR~gR~~-~~~g~~i~~~~~ 456 (591)
+|-+++.|+|||.-.+|+. ++ -.-++..|.|+.|||||-+ ...|++++++.|
T Consensus 496 TTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 496 TTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9999999999997655432 23 2458999999999999954 568999999876
No 69
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.9e-36 Score=297.44 Aligned_cols=325 Identities=19% Similarity=0.270 Sum_probs=237.6
Q ss_pred CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 121 GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 121 ~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
+.-.++.+|......++.+ |++++.|||-|||+.+++-+...+... .+ ++|+++||+-|+.|....+.++...
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-----~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-----GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-----CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 3456899999888887777 999999999999999888887776542 34 8999999999999999999999887
Q ss_pred cCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCC
Q 007743 201 HSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPK 279 (591)
Q Consensus 201 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~ 279 (591)
....++.++|........ ......+|+|+||..+.+-|..+. +++.++.++|||||||-.. ..|-......+..- +
T Consensus 85 p~~~i~~ltGev~p~~R~-~~w~~~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~-k 161 (542)
T COG1111 85 PEDEIAALTGEVRPEERE-ELWAKKKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA-K 161 (542)
T ss_pred ChhheeeecCCCChHHHH-HHHhhCCEEEeccHHHHhHHhcCc-cChHHceEEEechhhhccCcchHHHHHHHHHHhc-c
Confidence 777788888877665443 334457999999999988888776 8899999999999998765 33333333333332 2
Q ss_pred CCccEEEEeccCchhHHHHHHh--hCCCCCeEEEecCCCccc--------------------------------------
Q 007743 280 KDRQTALFSATQTKKVEDLARL--SFQTTPVYIDVDDGRTKV-------------------------------------- 319 (591)
Q Consensus 280 ~~~q~ll~SAT~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~-------------------------------------- 319 (591)
++.++++|||+....+.+... .+.-..+.+....+..-.
T Consensus 162 -~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 162 -NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred -CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999987665433221 111111222111100000
Q ss_pred ------ccC--------Cce--eEE-Eec-C-------------------------------------------------
Q 007743 320 ------TNE--------GLQ--QGY-CVV-P------------------------------------------------- 332 (591)
Q Consensus 320 ------~~~--------~l~--~~~-~~~-~------------------------------------------------- 332 (591)
... .+. +.. ... +
T Consensus 241 ~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~ 320 (542)
T COG1111 241 ELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA 320 (542)
T ss_pred HcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHH
Confidence 000 000 000 000 0
Q ss_pred -------------------------chhHHHHHHHHHH----hcCCCcEEEEecChhhHHHHHHHHHHcCCCeE-e----
Q 007743 333 -------------------------SAKRFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF-D---- 378 (591)
Q Consensus 333 -------------------------~~~k~~~l~~~l~----~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~---- 378 (591)
..-|+..+..+++ .....++|||++.+++++.+..+|...+..+. .
T Consensus 321 a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQ 400 (542)
T COG1111 321 AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQ 400 (542)
T ss_pred HHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeec
Confidence 0112222333332 23456999999999999999999999887764 2
Q ss_pred ----ccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEe
Q 007743 379 ----IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454 (591)
Q Consensus 379 ----lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~ 454 (591)
...||+|.++..++++|++|.++|||||++++.|+|||.|++||.|++-.|.-.++||.||||| +++|.+++++
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR--~r~Grv~vLv 478 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR--KRKGRVVVLV 478 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc--CCCCeEEEEE
Confidence 2357999999999999999999999999999999999999999999999999999999999999 3789999999
Q ss_pred Chhh
Q 007743 455 IPEE 458 (591)
Q Consensus 455 ~~~e 458 (591)
+...
T Consensus 479 t~gt 482 (542)
T COG1111 479 TEGT 482 (542)
T ss_pred ecCc
Confidence 9874
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=9e-36 Score=318.79 Aligned_cols=319 Identities=21% Similarity=0.290 Sum_probs=236.2
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHH-HHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV-ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l-~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|.+|++ +.+ .|..|+|++||++||.|.++++..+.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL--------~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH--------hCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 565 68999999999998887 9999999999999999995 443 24569999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhhc-ccc-----
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRILE-ANF----- 266 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~~-~~f----- 266 (591)
.++++++++++|+.+...... .-.++|+|+||++| +++|+... .+.++.+.++|+||+|+|+- ...
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 999999999999987654332 23589999999999 99997762 24578899999999998763 110
Q ss_pred ----------HHHHHHHHHhCCC--------CC-----------------------------------------------
Q 007743 267 ----------EEEMRQIMKLLPK--------KD----------------------------------------------- 281 (591)
Q Consensus 267 ----------~~~~~~i~~~l~~--------~~----------------------------------------------- 281 (591)
......|...+.. ..
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0111112222210 00
Q ss_pred -------------------------------------------------------------ccEEEEeccCchhHHHHHH
Q 007743 282 -------------------------------------------------------------RQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 282 -------------------------------------------------------------~q~ll~SAT~~~~~~~l~~ 300 (591)
..+.+||+|......++..
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 1222333333333223322
Q ss_pred hhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHH--hcCCCcEEEEecChhhHHHHHHHHHHcCCCeEe
Q 007743 301 LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD 378 (591)
Q Consensus 301 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 378 (591)
.+-. + ++.+.......... . ...+......|+..+...+. ...+.++||||+|+..++.++..|...|+++..
T Consensus 360 iY~l--~-vv~IPtnkp~~R~d-~-~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~ 434 (745)
T TIGR00963 360 IYNL--E-VVVVPTNRPVIRKD-L-SDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNV 434 (745)
T ss_pred HhCC--C-EEEeCCCCCeeeee-C-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEE
Confidence 2211 1 11111111100000 0 01222334567777766663 345889999999999999999999999999999
Q ss_pred ccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC-------CcEEEEcCCCCChhhhhhhccccccCCCCcceEE
Q 007743 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA-------VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451 (591)
Q Consensus 379 lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~-------v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i 451 (591)
+||+ +..|...+..|..+...|+|||++++||+||+. .-+||++++|.|...|.||+|||||.| .+|.+.
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG-~~G~s~ 511 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG-DPGSSR 511 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC-CCcceE
Confidence 9999 889999999999999999999999999999998 559999999999999999999999975 789999
Q ss_pred EEeChhhH
Q 007743 452 LFLIPEEL 459 (591)
Q Consensus 452 ~~~~~~e~ 459 (591)
.|++.+|.
T Consensus 512 ~~ls~eD~ 519 (745)
T TIGR00963 512 FFLSLEDN 519 (745)
T ss_pred EEEeccHH
Confidence 99998764
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=330.11 Aligned_cols=335 Identities=21% Similarity=0.217 Sum_probs=254.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhhccc-cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPL-MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 108 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i-l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
.+++.+.+-+...++..+.+.|+.++... ..++|+++++|||||||+.+++.+++.+.+. +.++|+|+|+|+|
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------~~k~vYivPlkAL 88 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------GGKVVYIVPLKAL 88 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc------CCcEEEEeChHHH
Confidence 47788888888899988888887777664 4569999999999999999999999998763 5789999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc
Q 007743 187 AIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF 266 (591)
Q Consensus 187 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f 266 (591)
|.++++.+. -....+++|+..+|+.....+. ..+++|||+||+++...+++... ....+++|||||+|.+.+...
T Consensus 89 a~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 89 AEEKYEEFS-RLEELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHhh-hHHhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCccc
Confidence 999999998 4467799999999998766532 35699999999999888887764 568899999999999988767
Q ss_pred HHHHHHHHHhCCCC--CccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh------H-H
Q 007743 267 EEEMRQIMKLLPKK--DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK------R-F 337 (591)
Q Consensus 267 ~~~~~~i~~~l~~~--~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~------k-~ 337 (591)
++.+..|+...+.. ..|++.+|||+|+. .+++.+.-.+ +......+. .........+.+....... . .
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~-~~~~~~rp~-~l~~~v~~~~~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAK-LVESDWRPV-PLRRGVPYVGAFLGADGKKKTWPLLIDN 240 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCc-ccccCCCCc-ccccCCccceEEEEecCccccccccchH
Confidence 77778777766542 37999999999975 5666643222 221111110 1111111222222222111 1 2
Q ss_pred HHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHc-------------------------------------CCCeEec
Q 007743 338 ILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYI-------------------------------------QVDCFDI 379 (591)
Q Consensus 338 ~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l 379 (591)
..+...+.. ..++++||||+|++.+...+..|... ..++..+
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 222222222 34789999999999999888888730 1246789
Q ss_pred cCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEE----EcC-----CCCChhhhhhhccccccCC-CCcce
Q 007743 380 HGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIV----QYD-----PPDEPKEYIHRVGRTARGE-GARGN 449 (591)
Q Consensus 380 h~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI----~~~-----~P~s~~~y~qr~GR~gR~~-~~~g~ 449 (591)
|++|+.++|.-+.+.|+.|.++|||||..++.|+|+|.-.+|| -|+ .+.++-+|+|++|||||-| ...|.
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~ 400 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGE 400 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCc
Confidence 9999999999999999999999999999999999999887777 377 5667899999999999965 56788
Q ss_pred EEEEeCh
Q 007743 450 ALLFLIP 456 (591)
Q Consensus 450 ~i~~~~~ 456 (591)
++++...
T Consensus 401 ~~i~~~~ 407 (766)
T COG1204 401 AIILATS 407 (766)
T ss_pred EEEEecC
Confidence 8888843
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-34 Score=329.55 Aligned_cols=325 Identities=21% Similarity=0.261 Sum_probs=236.9
Q ss_pred CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 121 GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 121 ~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
+...++++|..++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+..+...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 3457899999999988887 99999999999999999988877632 4568999999999999999999987665
Q ss_pred cCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCC
Q 007743 201 HSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280 (591)
Q Consensus 201 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~ 280 (591)
.+..+..+.|+.... +...+..+.+|+|+||+.+...+.... +.+.++++|||||||++........+...+....+
T Consensus 85 ~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~- 161 (773)
T PRK13766 85 PEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGR-ISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK- 161 (773)
T ss_pred CCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCC-CChhhCcEEEEECCccccccccHHHHHHHHHhcCC-
Confidence 455677777766544 344556678999999999987776544 66789999999999998753322233333333333
Q ss_pred CccEEEEeccCchhHHH---HHHhhCCC-----------------CC--eEEEecCCC----------------------
Q 007743 281 DRQTALFSATQTKKVED---LARLSFQT-----------------TP--VYIDVDDGR---------------------- 316 (591)
Q Consensus 281 ~~q~ll~SAT~~~~~~~---l~~~~~~~-----------------~~--~~i~~~~~~---------------------- 316 (591)
..++++||||+...... +....... .+ ..+.+.-..
T Consensus 162 ~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 162 NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999997433222 22211000 00 000000000
Q ss_pred --cccccC-------------CceeE------------------------------------------------------
Q 007743 317 --TKVTNE-------------GLQQG------------------------------------------------------ 327 (591)
Q Consensus 317 --~~~~~~-------------~l~~~------------------------------------------------------ 327 (591)
...... .+...
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence 000000 00000
Q ss_pred ------------------EEecCchhHHHHHHHHHHh----cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCc---
Q 007743 328 ------------------YCVVPSAKRFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGK--- 382 (591)
Q Consensus 328 ------------------~~~~~~~~k~~~l~~~l~~----~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~--- 382 (591)
........|+..|..++.. ....++||||+++..+..+...|...++.+..+||.
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~ 401 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASK 401 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccc
Confidence 0000112344555555544 457899999999999999999999999999999886
Q ss_pred -----cCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChh
Q 007743 383 -----QKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457 (591)
Q Consensus 383 -----~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~ 457 (591)
|++.+|..++..|++|...|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+ .|.+++++...
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~--~~~v~~l~~~~ 479 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE--EGRVVVLIAKG 479 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC--CCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999964 48888888763
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.1e-35 Score=300.31 Aligned_cols=293 Identities=17% Similarity=0.199 Sum_probs=199.8
Q ss_pred HHHHhhccccCCCc--EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc----
Q 007743 128 IQARAVPPLMVGKD--VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH---- 201 (591)
Q Consensus 128 ~Q~~~i~~il~g~d--vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~---- 201 (591)
+|.++++.+..+.+ ++++||||||||++|++|++.. +.++++++|+++|+.|+++.+..+....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 59999999998874 7889999999999999998842 3458999999999999999999887543
Q ss_pred CCeEEEEEcCccch--HH-----------------HH-HHhcCCCEEEeCchHHHHHHhcC---CC----CccCCceEEE
Q 007743 202 SQTVGLVIGGSARR--GE-----------------AE-RIVKGVNLLVATPGRLLDHLQNT---KG----FIYKNLKCLV 254 (591)
Q Consensus 202 ~~~~~~~~gg~~~~--~~-----------------~~-~l~~~~~Iiv~Tp~~L~~~l~~~---~~----~~~~~l~~lV 254 (591)
+..+..+.|..... .. .. .....+.|+++||+.|..++... +. ..+.++++||
T Consensus 71 ~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV 150 (357)
T TIGR03158 71 DVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVI 150 (357)
T ss_pred CceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEE
Confidence 34455555542111 00 00 01235788999999987655432 11 1257899999
Q ss_pred EeCchhhhcccc-----HHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhh-CCCCCeEEEecC-----C-------C
Q 007743 255 IDEADRILEANF-----EEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLS-FQTTPVYIDVDD-----G-------R 316 (591)
Q Consensus 255 lDEah~l~~~~f-----~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~-~~~~~~~i~~~~-----~-------~ 316 (591)
|||+|.+...+. .-....++..... ..+++++|||+++.+....... ....+....... + .
T Consensus 151 ~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 151 FDEFHLYDAKQLVGMLFLLAYMQLIRFFEC-RRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EecccccCcccchhhhhhhHHHHHHHhhhc-CCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999998764321 1122333333333 5799999999999876655533 112232221111 0 0
Q ss_pred c----ccccCCceeEEEecCchhHHHHH---HHHH----HhcCCCcEEEEecChhhHHHHHHHHHHcC--CCeEeccCcc
Q 007743 317 T----KVTNEGLQQGYCVVPSAKRFILL---YSFL----KRNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQ 383 (591)
Q Consensus 317 ~----~~~~~~l~~~~~~~~~~~k~~~l---~~~l----~~~~~~~~iVF~~s~~~~~~l~~~L~~~~--~~~~~lh~~~ 383 (591)
. ......+.+.+.. ....+...+ ...+ +...++++||||+|+..++.++..|+..+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 0011234444444 222222222 2222 22346799999999999999999999864 5788999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccc
Q 007743 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTA 441 (591)
Q Consensus 384 ~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~g 441 (591)
++.+|.++ ++..|||||++++||||+|.+ +|| ++ |.+.++|+||+||||
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99998765 478999999999999999987 666 45 899999999999997
No 74
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2e-34 Score=275.67 Aligned_cols=335 Identities=18% Similarity=0.259 Sum_probs=252.7
Q ss_pred cccCCCCHHHHHHHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 104 FDSLGLSQHTFRAIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 104 f~~l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
-++++.+....+.|+ .+....++|.|..+|+..+.|.|+++..|||.||++||.+|++.. ...+|||+|
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----------dg~alvi~p 142 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----------DGFALVICP 142 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----------CCceEeech
Confidence 346778888888776 467788999999999999999999999999999999999999854 456899999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-------cCCCEEEeCchHHHHH---Hh-cCCCCccCCce
Q 007743 183 TRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-------KGVNLLVATPGRLLDH---LQ-NTKGFIYKNLK 251 (591)
Q Consensus 183 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-------~~~~Iiv~Tp~~L~~~---l~-~~~~~~~~~l~ 251 (591)
...|+....-.++.+ ++....+...++. ++..+.. ....+++.||+.+... +. -.+.+....+.
T Consensus 143 lislmedqil~lkql----gi~as~lnanssk-e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~ 217 (695)
T KOG0353|consen 143 LISLMEDQILQLKQL----GIDASMLNANSSK-EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFK 217 (695)
T ss_pred hHHHHHHHHHHHHHh----CcchhhccCcccH-HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeE
Confidence 999998877777766 4444443333332 2222221 2368999999987432 11 11224456789
Q ss_pred EEEEeCchhhhcc--ccHHHHHHH--HHhCCCCCccEEEEeccCchhHHHHHHhhCCCC-CeEEEecCCCcccccCCcee
Q 007743 252 CLVIDEADRILEA--NFEEEMRQI--MKLLPKKDRQTALFSATQTKKVEDLARLSFQTT-PVYIDVDDGRTKVTNEGLQQ 326 (591)
Q Consensus 252 ~lVlDEah~l~~~--~f~~~~~~i--~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~-~~~i~~~~~~~~~~~~~l~~ 326 (591)
++.+||+|+..+| +|++++..+ ++.-- +...++.++||.++.+.+-++..+.-. ...+.... ...++..
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f-----nr~nl~y 291 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF-----NRPNLKY 291 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc-----CCCCcee
Confidence 9999999999985 477766543 33222 267899999999998866555433321 11222222 2223333
Q ss_pred EEEecC--chhHHHHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEE
Q 007743 327 GYCVVP--SAKRFILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403 (591)
Q Consensus 327 ~~~~~~--~~~k~~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vL 403 (591)
.+..-| .++-..-+..+++.. .+...||||-+.+.++.++..|+..|+....||+.|.+.+|..+.+.|..|++.|+
T Consensus 292 ev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 292 EVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred EeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEE
Confidence 333333 233445556666543 46678999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCcEEEEcCCCCChhhhhh-------------------------------------------hcccc
Q 007743 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIH-------------------------------------------RVGRT 440 (591)
Q Consensus 404 vaT~~~~~GiDip~v~~VI~~~~P~s~~~y~q-------------------------------------------r~GR~ 440 (591)
|||-++++|||.|+|++|||..+|.|++.|+| ..||+
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 99999999999999999999999999999999 78999
Q ss_pred ccCCCCcceEEEEeChhhHH
Q 007743 441 ARGEGARGNALLFLIPEELQ 460 (591)
Q Consensus 441 gR~~~~~g~~i~~~~~~e~~ 460 (591)
||. +.+..|+++|--.|.-
T Consensus 452 grd-~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 452 GRD-DMKADCILYYGFADIF 470 (695)
T ss_pred ccC-CCcccEEEEechHHHH
Confidence 995 5789999999876653
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.1e-33 Score=319.04 Aligned_cols=302 Identities=19% Similarity=0.294 Sum_probs=210.7
Q ss_pred HHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC----hHHHHHHHHHHHHHHhhcC
Q 007743 127 QIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT----RELAIQTHAVAKDLLKYHS 202 (591)
Q Consensus 127 ~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt----reLa~q~~~~~~~~~~~~~ 202 (591)
....+.+..+..++.++++|+||||||+. +|.+..... . .....+++.-|. ++||.++.+.+..- .+
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g--~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG 147 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELG--R--GVKGLIGHTQPRRLAARTVANRIAEELETE---LG 147 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcC--C--CCCCceeeCCCcHHHHHHHHHHHHHHHhhh---hc
Confidence 34445556666777889999999999994 785433211 1 111234444574 57777777666531 22
Q ss_pred CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-hhhccccHHH-HHHHHHhCCCC
Q 007743 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD-RILEANFEEE-MRQIMKLLPKK 280 (591)
Q Consensus 203 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah-~l~~~~f~~~-~~~i~~~l~~~ 280 (591)
..++.-+...+ ....+++|+|+|||+|++++.... .++++++||||||| ++++.+|... +..++... +
T Consensus 148 ~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r--p 217 (1294)
T PRK11131 148 GCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR--P 217 (1294)
T ss_pred ceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHHHHHHhhhcC--C
Confidence 22322221111 123468999999999999998654 48999999999999 6888887643 33333322 3
Q ss_pred CccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCch------hHHHHHHHHH---HhcCCCc
Q 007743 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA------KRFILLYSFL---KRNLSKK 351 (591)
Q Consensus 281 ~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~------~k~~~l~~~l---~~~~~~~ 351 (591)
..|+++||||++. ..+.+. +.+.| .+.+.... ..+...|...... +.+..+...+ .....+.
T Consensus 218 dlKvILmSATid~--e~fs~~-F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRH-FNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHH-cCCCC-EEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 6899999999975 355553 44445 35554321 1245556554321 2223333322 2345688
Q ss_pred EEEEecChhhHHHHHHHHHHcCCC---eEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC---
Q 007743 352 VMVFFSSCNSVKFHSELLRYIQVD---CFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD--- 425 (591)
Q Consensus 352 ~iVF~~s~~~~~~l~~~L~~~~~~---~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~--- 425 (591)
+|||+++..+++.+++.|...+++ +..+||+|++.+|..+++. .|..+||||||++++|||||+|++||+++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999987765 6789999999999999886 47889999999999999999999999986
Q ss_pred ------------CC---CChhhhhhhccccccCCCCcceEEEEeChhhHH
Q 007743 426 ------------PP---DEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460 (591)
Q Consensus 426 ------------~P---~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~ 460 (591)
+| .|.++|.||+|||||. ..|.|+.|+++++..
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~--~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV--SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC--CCcEEEEeCCHHHHH
Confidence 33 4568999999999997 479999999987643
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=314.52 Aligned_cols=335 Identities=21% Similarity=0.244 Sum_probs=251.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~ 188 (591)
....+..+|.+.|+..|..+|.+|+..+.+|+|+||+.+||||||.+|++||++.+++.. ..++|+|.||++||+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-----~a~AL~lYPtnALa~ 129 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-----SARALLLYPTNALAN 129 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-----CccEEEEechhhhHh
Confidence 344567888899999999999999999999999999999999999999999999998853 347999999999999
Q ss_pred HHHHHHHHHHhhcC--CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC-C--CCccCCceEEEEeCchhhhc
Q 007743 189 QTHAVAKDLLKYHS--QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT-K--GFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 189 q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~-~--~~~~~~l~~lVlDEah~l~~ 263 (591)
.+.+.++++....+ +.+....|..........+.+.++||++||.+|..++... . .+.++++++||+||+|-.-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998887 5556666666555554566788999999999998744332 2 23478899999999996433
Q ss_pred cccHHHHHHHHH----hCC--CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC-----
Q 007743 264 ANFEEEMRQIMK----LLP--KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP----- 332 (591)
Q Consensus 264 ~~f~~~~~~i~~----~l~--~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~----- 332 (591)
.|+..+..+++ .+. ....|+++.|||+.+..+.... .+...... .+... ..+......+...+
T Consensus 210 -v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~-l~~~~f~~-~v~~~---g~~~~~~~~~~~~p~~~~~ 283 (851)
T COG1205 210 -VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEE-LFGRDFEV-PVDED---GSPRGLRYFVRREPPIREL 283 (851)
T ss_pred -cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHH-hcCCccee-eccCC---CCCCCceEEEEeCCcchhh
Confidence 23333333332 222 1378999999999887554444 44332222 13221 22233333333333
Q ss_pred ----chhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHH----HHHHHcC----CCeEeccCccCHHHHHHHHHHhhcC
Q 007743 333 ----SAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHS----ELLRYIQ----VDCFDIHGKQKQQKRTTTFFDFCKA 398 (591)
Q Consensus 333 ----~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~----~~L~~~~----~~~~~lh~~~~~~~R~~~~~~F~~g 398 (591)
.......+..++.. ..+-++|+|+.++..++.+. ..+...+ ..+..++|+|...+|.++...|++|
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 11222223333322 23679999999999999986 4444444 5688999999999999999999999
Q ss_pred CccEEEEeCccccCCCCCCCcEEEEcCCCC-ChhhhhhhccccccCCCCcceEEEEeC
Q 007743 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPD-EPKEYIHRVGRTARGEGARGNALLFLI 455 (591)
Q Consensus 399 ~~~vLvaT~~~~~GiDip~v~~VI~~~~P~-s~~~y~qr~GR~gR~~~~~g~~i~~~~ 455 (591)
+..++++|+++.-|||+.+++.||.++.|. +..+++||+||+||.+ +.+..++.+.
T Consensus 364 ~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~-~~~l~~~v~~ 420 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG-QESLVLVVLR 420 (851)
T ss_pred CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC-CCceEEEEeC
Confidence 999999999999999999999999999999 8999999999999965 3455555544
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=295.01 Aligned_cols=326 Identities=22% Similarity=0.290 Sum_probs=230.0
Q ss_pred CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 121 GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 121 ~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
....++.+|.+.+..+| |+|+||++|||+|||.++...+++++.. .+..++|+++||+-|+.|+...+..++..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-----~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-----RPKGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-----CCcceEEEeeCCchHHHHHHHHHhhccCc
Confidence 34478999999999999 9999999999999999998888888754 24578999999999999988777666544
Q ss_pred cCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCC
Q 007743 201 HSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPK 279 (591)
Q Consensus 201 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~ 279 (591)
..+....||.........+-...+|+|+||..|.+.|.+...-.++.+.++||||||+-.. .-|...+...+..-..
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 4555566665544444456667899999999999998877644478999999999998775 4455555455544433
Q ss_pred CCccEEEEeccCchhHHHHHHhhC--CC--------------------CCeEEE--------------------------
Q 007743 280 KDRQTALFSATQTKKVEDLARLSF--QT--------------------TPVYID-------------------------- 311 (591)
Q Consensus 280 ~~~q~ll~SAT~~~~~~~l~~~~~--~~--------------------~~~~i~-------------------------- 311 (591)
..|++++|||+............ .- .+..+.
T Consensus 211 -~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 211 -GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred -cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 45999999998765433211100 00 000000
Q ss_pred ----ecCCC-----------ccc-------------------------ccCCce---------eEEEecC----------
Q 007743 312 ----VDDGR-----------TKV-------------------------TNEGLQ---------QGYCVVP---------- 332 (591)
Q Consensus 312 ----~~~~~-----------~~~-------------------------~~~~l~---------~~~~~~~---------- 332 (591)
+.... ... ....++ ..+..+.
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 00000 000 000000 0000000
Q ss_pred -----------------------chhHHHHHHHHHH----hcCCCcEEEEecChhhHHHHHHHHHHc---CCCeE-----
Q 007743 333 -----------------------SAKRFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELLRYI---QVDCF----- 377 (591)
Q Consensus 333 -----------------------~~~k~~~l~~~l~----~~~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~----- 377 (591)
...|+..+..++. .....++||||.++..|..+...|... ++...
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 0112222333332 234569999999999999999999842 22222
Q ss_pred ---eccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEe
Q 007743 378 ---DIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFL 454 (591)
Q Consensus 378 ---~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~ 454 (591)
.-..+|++.+...++++|++|.++|||||++++.||||+.|++||-||.-.++-..+||.|| ||+ +.|.+++++
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa--~ns~~vll~ 526 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA--RNSKCVLLT 526 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc--cCCeEEEEE
Confidence 22358999999999999999999999999999999999999999999999999999999999 996 479999999
Q ss_pred Chhh
Q 007743 455 IPEE 458 (591)
Q Consensus 455 ~~~e 458 (591)
+..+
T Consensus 527 t~~~ 530 (746)
T KOG0354|consen 527 TGSE 530 (746)
T ss_pred cchh
Confidence 8544
No 78
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-32 Score=295.52 Aligned_cols=325 Identities=15% Similarity=0.195 Sum_probs=220.2
Q ss_pred CCCcHHHHHhhccccC-C--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 123 QFMTQIQARAVPPLMV-G--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~-g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
..++|+|.+++..+.. | +..++++|||+|||++.+..+. .+ +.++|||||+..|+.||.+.+.++..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l---------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV---------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh---------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 3689999999998773 3 3689999999999999765433 22 34589999999999999999998865
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC-------CCCccCCceEEEEeCchhhhccccHHHHHH
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT-------KGFIYKNLKCLVIDEADRILEANFEEEMRQ 272 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~-------~~~~~~~l~~lVlDEah~l~~~~f~~~~~~ 272 (591)
.....++.++|+.... ......|+|+|+..+....... ..+.-..+++||+||||++.. ..+..
T Consensus 324 l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~ 394 (732)
T TIGR00603 324 IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRR 394 (732)
T ss_pred CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHH
Confidence 5555666666653221 1223689999998775322111 012234688999999999864 34555
Q ss_pred HHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCc--ccccCCceeE--E--------------------
Q 007743 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRT--KVTNEGLQQG--Y-------------------- 328 (591)
Q Consensus 273 i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~--~-------------------- 328 (591)
++..+. ....+++|||+...........+.-.|......-... .......... .
T Consensus 395 il~~l~--a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 395 VLTIVQ--AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHhcC--cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 666665 3467999999864332211111111233322211000 0000000000 0
Q ss_pred -EecCchhHHHHHHHHHHhc--CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcC-CccEEE
Q 007743 329 -CVVPSAKRFILLYSFLKRN--LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILL 404 (591)
Q Consensus 329 -~~~~~~~k~~~l~~~l~~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g-~~~vLv 404 (591)
.......|+..+..++..+ .+.++||||.+...+..++..| + +..+||++++.+|..+++.|+.| .+++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 0111233555555566544 5789999999999888887776 3 45689999999999999999875 789999
Q ss_pred EeCccccCCCCCCCcEEEEcCCC-CChhhhhhhccccccCCCCcce-------EEEEeChhhH--H----HHHHHHHcCC
Q 007743 405 CTDVAARGLDIPAVDWIVQYDPP-DEPKEYIHRVGRTARGEGARGN-------ALLFLIPEEL--Q----FLRYLKAAKV 470 (591)
Q Consensus 405 aT~~~~~GiDip~v~~VI~~~~P-~s~~~y~qr~GR~gR~~~~~g~-------~i~~~~~~e~--~----~~~~l~~~~~ 470 (591)
+|+++.+|||+|++++||+++.| .|...|+||+||++|.+ ..|. .+.|++++.. . .-++|.+.|.
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~-~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY 626 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK-KGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGY 626 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC-CCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999998 59999999999999975 3344 3778877432 2 2456677776
Q ss_pred Cccc
Q 007743 471 PVKE 474 (591)
Q Consensus 471 ~~~~ 474 (591)
..+-
T Consensus 627 ~~~v 630 (732)
T TIGR00603 627 SFKV 630 (732)
T ss_pred eeEE
Confidence 5443
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=291.78 Aligned_cols=339 Identities=19% Similarity=0.248 Sum_probs=249.3
Q ss_pred HHCCCCCCcHHHHHhhccccC-CCcEEEEccCCCCchHHhHHHHHHHHHhcc---cCCCCCcEEEEEcCChHHHHHHHHH
Q 007743 118 QDMGFQFMTQIQARAVPPLMV-GKDVLGAARTGSGKTLAFLIPAVELLYNAQ---FAPRNGTGVIVICPTRELAIQTHAV 193 (591)
Q Consensus 118 ~~~~~~~~~~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~---~~~~~~~~~lil~PtreLa~q~~~~ 193 (591)
.-++|..+..+|+.++|.+.. +.|+|+|||||||||-.|+|.||+.+.+.. ....++.++++|+|+++||.++++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 457888999999999999885 569999999999999999999999887521 1224577899999999999999999
Q ss_pred HHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC---CCccCCceEEEEeCchhhhccccHHHH
Q 007743 194 AKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK---GFIYKNLKCLVIDEADRILEANFEEEM 270 (591)
Q Consensus 194 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~---~~~~~~l~~lVlDEah~l~~~~f~~~~ 270 (591)
+.+-+...++.|..++|+....... ...++|||+||+++ +.+.+.. .-.++.+++|||||+|.|.+ ..++.+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVL 258 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC-cccchH
Confidence 9888888899999999988765443 23589999999987 3332221 12367889999999997665 456777
Q ss_pred HHHHHhCC------CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCch---h------
Q 007743 271 RQIMKLLP------KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA---K------ 335 (591)
Q Consensus 271 ~~i~~~l~------~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~------ 335 (591)
+.|+.... ....+++++|||+|+- .+++...--+.+.-+..- .....+..+.+.+.-.+.. .
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsF--d~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSF--DQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeee--cccccccceeeeEEeeecccchhhhhhHH
Confidence 77766543 2368899999999964 566664322212211111 1222334455555544433 1
Q ss_pred --HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc-----------------------CCCeEeccCccCHHHHHH
Q 007743 336 --RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI-----------------------QVDCFDIHGKQKQQKRTT 390 (591)
Q Consensus 336 --k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~-----------------------~~~~~~lh~~~~~~~R~~ 390 (591)
.+..+.+++. .+.+++|||.++..+...+..|.+. ...+..+|+||.-.+|..
T Consensus 336 ~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 336 EVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHH
Confidence 1122233333 3789999999999998888888653 134677999999999999
Q ss_pred HHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cCCCC------ChhhhhhhccccccCC-CCcceEEEEeChhhH
Q 007743 391 TFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YDPPD------EPKEYIHRVGRTARGE-GARGNALLFLIPEEL 459 (591)
Q Consensus 391 ~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~P~------s~~~y~qr~GR~gR~~-~~~g~~i~~~~~~e~ 459 (591)
+.+.|..|.++||+||..++.|+|+|+--++|- ||.-. +.-+.+|..|||||-. +..|.++++.+.+-.
T Consensus 414 ~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 414 VEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred HHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 999999999999999999999999997666662 44332 4567799999999943 567999998887666
Q ss_pred HHHHHHH
Q 007743 460 QFLRYLK 466 (591)
Q Consensus 460 ~~~~~l~ 466 (591)
....-|.
T Consensus 494 ~~Y~sLl 500 (1230)
T KOG0952|consen 494 DHYESLL 500 (1230)
T ss_pred HHHHHHH
Confidence 5444443
No 80
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.5e-32 Score=308.14 Aligned_cols=301 Identities=20% Similarity=0.293 Sum_probs=214.4
Q ss_pred HhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEc
Q 007743 131 RAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIG 210 (591)
Q Consensus 131 ~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~g 210 (591)
+.+..+..++.+|++|+||||||.. +|.+.. .... .....+++.-|.|-.|..+...+.. .++..++..+|
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~ll--e~~~--~~~~~I~~tQPRRlAA~svA~RvA~---elg~~lG~~VG 144 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICL--ELGR--GSHGLIGHTQPRRLAARTVAQRIAE---ELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHH--HcCC--CCCceEecCCccHHHHHHHHHHHHH---HhCCCcceEEe
Confidence 4555566677889999999999995 675533 2211 1123556677998888876655443 34555555555
Q ss_pred CccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-hhhccccHHH-HHHHHHhCCCCCccEEEEe
Q 007743 211 GSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD-RILEANFEEE-MRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 211 g~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah-~l~~~~f~~~-~~~i~~~l~~~~~q~ll~S 288 (591)
..-..... ....+.|+|+|||+|++.+...+ .+..+++||||||| ++++.+|.-. +..++...+ ..|+++||
T Consensus 145 Y~vR~~~~--~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp--dLKlIlmS 218 (1283)
T TIGR01967 145 YKVRFHDQ--VSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP--DLKIIITS 218 (1283)
T ss_pred eEEcCCcc--cCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC--CCeEEEEe
Confidence 43221111 13457999999999999997764 47899999999999 6888887754 556655544 68999999
Q ss_pred ccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc------hhHHHHHHHHHH---hcCCCcEEEEecCh
Q 007743 289 ATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS------AKRFILLYSFLK---RNLSKKVMVFFSSC 359 (591)
Q Consensus 289 AT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~------~~k~~~l~~~l~---~~~~~~~iVF~~s~ 359 (591)
||++. ..+.+. +.+.|. +.+.... ..+...|..... ......+...+. ....+.+|||+++.
T Consensus 219 ATld~--~~fa~~-F~~apv-I~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 219 ATIDP--ERFSRH-FNNAPI-IEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred CCcCH--HHHHHH-hcCCCE-EEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 99974 456664 444343 4443311 123344443321 123333333332 23468999999999
Q ss_pred hhHHHHHHHHHHcC---CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCC---------
Q 007743 360 NSVKFHSELLRYIQ---VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP--------- 427 (591)
Q Consensus 360 ~~~~~l~~~L~~~~---~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P--------- 427 (591)
.+++.+++.|...+ +.+..+||+|++.+|.+++..+ +..+|||||+++++|||||+|++||+++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999998764 4588999999999999997654 347999999999999999999999999854
Q ss_pred ---------CChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 428 ---------DEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 428 ---------~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
.|.++|.||+|||||.+ .|.|+.+++.++.
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~--~G~cyRLyte~~~ 406 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA--PGICIRLYSEEDF 406 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC--CceEEEecCHHHH
Confidence 36689999999999975 7999999998764
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.4e-30 Score=286.96 Aligned_cols=316 Identities=18% Similarity=0.190 Sum_probs=216.2
Q ss_pred CCcHHHHHhhccccCC---CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 124 FMTQIQARAVPPLMVG---KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g---~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
.+|+.|.++++.+..+ +++++.|+||||||.+|+.++.+.+. .+.++||++||++|+.|+++.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-------~g~~vLvLvPt~~L~~Q~~~~l~~~--- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-------QGKQALVLVPEIALTPQMLARFRAR--- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHH---
Confidence 5899999999999874 78999999999999999988776653 2578999999999999999988764
Q ss_pred cCCeEEEEEcCccchHHH---HHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc------HHHH
Q 007743 201 HSQTVGLVIGGSARRGEA---ERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF------EEEM 270 (591)
Q Consensus 201 ~~~~~~~~~gg~~~~~~~---~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f------~~~~ 270 (591)
++..+..++|+.+..... ..+. ..++|+|+||+.+. ..+.++++||+||+|...-... ...+
T Consensus 214 fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 356788888887654433 2333 34799999998874 3467899999999997653211 1122
Q ss_pred HHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCch-------hHHHHHHHH
Q 007743 271 RQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA-------KRFILLYSF 343 (591)
Q Consensus 271 ~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-------~k~~~l~~~ 343 (591)
...... . .+.+++++|||.+......+... ....+.+...........+ .+...... .-...++..
T Consensus 286 a~~ra~-~-~~~~~il~SATps~~s~~~~~~g---~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 286 AVVRAK-L-ENIPVVLGSATPSLESLANAQQG---RYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HHHHhh-c-cCCCEEEEcCCCCHHHHHHHhcc---ceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHHHH
Confidence 222222 2 27899999999876655444321 1222222211000000000 01110000 001233444
Q ss_pred HHhc--CCCcEEEEecCh------------------------------------------------------------hh
Q 007743 344 LKRN--LSKKVMVFFSSC------------------------------------------------------------NS 361 (591)
Q Consensus 344 l~~~--~~~~~iVF~~s~------------------------------------------------------------~~ 361 (591)
++.. .+.++|||+|.+ ..
T Consensus 359 i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G 438 (679)
T PRK05580 359 IKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPG 438 (679)
T ss_pred HHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeecc
Confidence 4432 255788887641 13
Q ss_pred HHHHHHHHHHc--CCCeEeccCccCH--HHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE--cCCCCC------
Q 007743 362 VKFHSELLRYI--QVDCFDIHGKQKQ--QKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ--YDPPDE------ 429 (591)
Q Consensus 362 ~~~l~~~L~~~--~~~~~~lh~~~~~--~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~--~~~P~s------ 429 (591)
++.+.+.|... +.++..+|+++.+ .++..+++.|.+|+..|||+|+++++|+|+|+|++|+. +|.+.+
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra 518 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRA 518 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccch
Confidence 45677777765 7789999999974 57899999999999999999999999999999999954 454433
Q ss_pred ----hhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 430 ----PKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 430 ----~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
...|+|++||+||. +..|.+++.....+...++.+
T Consensus 519 ~Er~~~~l~q~~GRagR~-~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 519 SERTFQLLTQVAGRAGRA-EKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHHHHHHHHhhccCC-CCCCEEEEEeCCCCCHHHHHH
Confidence 36799999999995 568999988766554544444
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.1e-29 Score=283.35 Aligned_cols=342 Identities=18% Similarity=0.146 Sum_probs=218.3
Q ss_pred CCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 124 FMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
.|.|+|..++..++.. ..+++...+|.|||..+.+.+-+.+.. ....++|||||. .|+.||...+.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF--- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRF--- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHh---
Confidence 4899999988776543 479999999999999987655444433 223579999997 88899887775432
Q ss_pred CCeEEEEEcCccchH--HHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcc--ccHHHHHHHHHhC
Q 007743 202 SQTVGLVIGGSARRG--EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA--NFEEEMRQIMKLL 277 (591)
Q Consensus 202 ~~~~~~~~gg~~~~~--~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~--~f~~~~~~i~~~l 277 (591)
+....++-++..... .........+++|+|.+.+...-.....+.-..+++||+||||++-.. .-... .+.+..+
T Consensus 223 ~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~-y~~v~~L 301 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSRE-YQVVEQL 301 (956)
T ss_pred CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHH-HHHHHHH
Confidence 334433322211100 000111236899999987764211101122346899999999998621 11112 2233333
Q ss_pred CCCCccEEEEeccCch-hHHH------------------HH-------------HhhCCCCC------------------
Q 007743 278 PKKDRQTALFSATQTK-KVED------------------LA-------------RLSFQTTP------------------ 307 (591)
Q Consensus 278 ~~~~~q~ll~SAT~~~-~~~~------------------l~-------------~~~~~~~~------------------ 307 (591)
......++++|||+-. ...+ +. ...+...+
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 3324578999999542 1110 00 00000000
Q ss_pred ---------------------------------eEEEecCCCcccccCCceeEE-E------------------------
Q 007743 308 ---------------------------------VYIDVDDGRTKVTNEGLQQGY-C------------------------ 329 (591)
Q Consensus 308 ---------------------------------~~i~~~~~~~~~~~~~l~~~~-~------------------------ 329 (591)
+.+.-........+...-+.+ .
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 000000000000000000000 0
Q ss_pred ------------ecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHH-HHcCCCeEeccCccCHHHHHHHHHHhh
Q 007743 330 ------------VVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELL-RYIQVDCFDIHGKQKQQKRTTTFFDFC 396 (591)
Q Consensus 330 ------------~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L-~~~~~~~~~lh~~~~~~~R~~~~~~F~ 396 (591)
......|+..|..+++.....++||||+++..+..+.+.| ...|+.+..+||+|++.+|.++++.|+
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 0111236667888888777889999999999999999999 467999999999999999999999999
Q ss_pred cC--CccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhh---HHHHHHHHHcCCC
Q 007743 397 KA--EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE---LQFLRYLKAAKVP 471 (591)
Q Consensus 397 ~g--~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e---~~~~~~l~~~~~~ 471 (591)
++ ...|||||+++++|+|++.+++|||||+|+++..|.||+||++|.| .++.+.+++...+ ...+..+...++.
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiG-Q~~~V~i~~~~~~~t~~e~i~~~~~~~l~ 620 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIG-QKHDIQIHVPYLEGTAQERLFRWYHEGLN 620 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCC-CCceEEEEEccCCCCHHHHHHHHHhhhcC
Confidence 84 5899999999999999999999999999999999999999999986 5677666655432 2344444455555
Q ss_pred ccccc
Q 007743 472 VKEYE 476 (591)
Q Consensus 472 ~~~~~ 476 (591)
+....
T Consensus 621 ife~~ 625 (956)
T PRK04914 621 AFEHT 625 (956)
T ss_pred ceecc
Confidence 44433
No 83
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=3.8e-30 Score=244.98 Aligned_cols=202 Identities=49% Similarity=0.778 Sum_probs=180.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC
Q 007743 104 FDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT 183 (591)
Q Consensus 104 f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 183 (591)
|+++++++.+.+.|.++|+..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... ...++++||++|+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--~~~~~~viii~p~ 78 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--KKDGPQALILAPT 78 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--ccCCceEEEEcCC
Confidence 78899999999999999999999999999999999999999999999999999999999887642 1246789999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 184 RELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 184 reLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
++|+.|+...+..+....+..+..+.|+.........+..+++|+|+||+.|.+++.... +.+.+++++|+||+|.+.+
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChHHhhc
Confidence 999999999999998888888899999888776666666689999999999999988765 6788999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEE
Q 007743 264 ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYI 310 (591)
Q Consensus 264 ~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i 310 (591)
.+|...+..+...++. ..|++++|||+++.+..+....+.. |.++
T Consensus 158 ~~~~~~~~~~~~~l~~-~~~~~~~SAT~~~~~~~~~~~~~~~-~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPK-DRQTLLFSATMPKEVRDLARKFLRN-PVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCc-ccEEEEEeccCCHHHHHHHHHHCCC-CEEe
Confidence 8999999999999986 8999999999999999888876654 5554
No 84
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=266.48 Aligned_cols=327 Identities=21% Similarity=0.233 Sum_probs=241.8
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
...| .+..+|++||-++..|..|+|.|+|.+|||+++-.++...- .++.++++.+|.++|.+|-+..++.-.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-------hhccceEecchhhhhccchHHHHHHhc
Confidence 3455 58999999999999999999999999999999776654221 357889999999999999888777543
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
. .+++++|+.....+ ..++|+|.+.|..+|.++.. .++++.+|||||+|.+.+...+-.|.+++-.+|
T Consensus 365 ~----DvgLlTGDvqinPe-------AsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 365 G----DVGLLTGDVQINPE-------ASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred c----ccceeecceeeCCC-------cceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeeeecc
Confidence 2 45588888766554 78999999999999988763 468899999999999999888889999999999
Q ss_pred CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCC-Cccccc------------------------------------
Q 007743 279 KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDG-RTKVTN------------------------------------ 321 (591)
Q Consensus 279 ~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~-~~~~~~------------------------------------ 321 (591)
+ ..++|++|||.|+..+ ++.+.-+.....|.+... +.+...
T Consensus 433 ~-HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~a 510 (1248)
T KOG0947|consen 433 R-HVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEA 510 (1248)
T ss_pred c-cceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccc
Confidence 8 9999999999998753 343322111111111100 000000
Q ss_pred ------------------CCceeEEEec-------Cc-hh---HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc
Q 007743 322 ------------------EGLQQGYCVV-------PS-AK---RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI 372 (591)
Q Consensus 322 ------------------~~l~~~~~~~-------~~-~~---k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 372 (591)
..-++.+..- .. .. .+..++..+....--++||||-+++.|+..+++|...
T Consensus 511 k~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~ 590 (1248)
T KOG0947|consen 511 KFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNL 590 (1248)
T ss_pred cccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhcc
Confidence 0000000000 00 11 1344555555555679999999999999999999753
Q ss_pred C---------------------------------------CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCC
Q 007743 373 Q---------------------------------------VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL 413 (591)
Q Consensus 373 ~---------------------------------------~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gi 413 (591)
+ -++.++||++-+--+.-+.-.|..|-++||+||..+++|+
T Consensus 591 nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGV 670 (1248)
T KOG0947|consen 591 NLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGV 670 (1248)
T ss_pred CcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhc
Confidence 2 2467899999999999999999999999999999999999
Q ss_pred CCCCCcEEEEc----C----CCCChhhhhhhccccccCC-CCcceEEEEeChh--hHHHHHHHHH
Q 007743 414 DIPAVDWIVQY----D----PPDEPKEYIHRVGRTARGE-GARGNALLFLIPE--ELQFLRYLKA 467 (591)
Q Consensus 414 Dip~v~~VI~~----~----~P~s~~~y~qr~GR~gR~~-~~~g~~i~~~~~~--e~~~~~~l~~ 467 (591)
|.|.-.+|+.- | .--.+-.|+|++|||||.| +..|.++++.... +..-++.+.-
T Consensus 671 NMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 671 NMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred CCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 99987777641 1 1136789999999999977 5778888887654 4455555543
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.7e-29 Score=274.26 Aligned_cols=325 Identities=22% Similarity=0.301 Sum_probs=229.0
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|. .++++|--.--.+..|+ |+.++||+|||++|.+|++...+. |..++||+||++||.|.++++..+..
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~-------G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS-------GRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 454 56788876665666665 899999999999999999977643 45699999999999999999999999
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCCCCcc-----CCceEEEEeCchhhhc-c--------
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTKGFIY-----KNLKCLVIDEADRILE-A-------- 264 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~~~-----~~l~~lVlDEah~l~~-~-------- 264 (591)
++++.+++++||.+........ .++|+|+||++| +++|+....+.+ +.+.++||||||.|+= .
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 9999999999998766554333 589999999999 999987743444 5899999999998762 0
Q ss_pred -------ccHHHHHHHHHhCCCC-------------CccEEEEeccCchhHHH---------------------------
Q 007743 265 -------NFEEEMRQIMKLLPKK-------------DRQTALFSATQTKKVED--------------------------- 297 (591)
Q Consensus 265 -------~f~~~~~~i~~~l~~~-------------~~q~ll~SAT~~~~~~~--------------------------- 297 (591)
.....+..+...+... ..+.+.+|-.-...++.
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 1122223333322210 11222222210000000
Q ss_pred --H-HHhhCCCCCeEEE-------ecC--CC-----c--------------------c----------------------
Q 007743 298 --L-ARLSFQTTPVYID-------VDD--GR-----T--------------------K---------------------- 318 (591)
Q Consensus 298 --l-~~~~~~~~~~~i~-------~~~--~~-----~--------------------~---------------------- 318 (591)
| +...+..+..++- ++. ++ . .
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 0 0111111111111 000 00 0 0
Q ss_pred ---------------------cccCCc----eeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHH
Q 007743 319 ---------------------VTNEGL----QQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRY 371 (591)
Q Consensus 319 ---------------------~~~~~l----~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~ 371 (591)
.++... ....+......|+..+..-+.. ..+.|+||||+|+..++.++.+|..
T Consensus 387 GTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 387 GTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred CCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 000000 0112233455677777766643 4588999999999999999999999
Q ss_pred cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC----------------------------------
Q 007743 372 IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA---------------------------------- 417 (591)
Q Consensus 372 ~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~---------------------------------- 417 (591)
.++++..+|+++.+.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 9999999999999862
Q ss_pred ----CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 418 ----VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 418 ----v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
==+||-...+.|..-=-|-.||+||.| .+|.+..|++-+|.
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQG-DPGss~f~lSleD~ 589 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDN 589 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcH
Confidence 126888888889888899999999975 78999999987663
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.9e-29 Score=261.53 Aligned_cols=324 Identities=19% Similarity=0.271 Sum_probs=238.4
Q ss_pred CCCCHHHHH-HHHHCCCCCCcHHHHHhhccccCC------CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 107 LGLSQHTFR-AIQDMGFQFMTQIQARAVPPLMVG------KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 107 l~l~~~l~~-~l~~~~~~~~~~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
++.+..+++ .+..+.| .||.-|++++.-|... .+=+++|.-|||||+++++.++..+- .|.++..
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-------~G~Q~AL 316 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-------AGYQAAL 316 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-------cCCeeEE
Confidence 344445444 4467787 6999999999988753 35789999999999999999988874 4788999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH---HHHHHhcC-CCEEEeCchHHHHHHhcCCCCccCCceEEEE
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG---EAERIVKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVI 255 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVl 255 (591)
++||--||.|.++.+.+++...++.+.+++|...... ....+.+| .+|||+|..-+. .. ..+.++.++|+
T Consensus 317 MAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~--V~F~~LgLVIi 390 (677)
T COG1200 317 MAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DK--VEFHNLGLVII 390 (677)
T ss_pred eccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----cc--eeecceeEEEE
Confidence 9999999999999999999999999999999765443 33445555 899999975442 22 56789999999
Q ss_pred eCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh
Q 007743 256 DEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335 (591)
Q Consensus 256 DEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (591)
||-||+- -.-+..+..-....+.+++||||.-|....+....-.....+-....++. .+..... +. .
T Consensus 391 DEQHRFG-----V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRk-----pI~T~~i--~~-~ 457 (677)
T COG1200 391 DEQHRFG-----VHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRK-----PITTVVI--PH-E 457 (677)
T ss_pred ecccccc-----HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCC-----ceEEEEe--cc-c
Confidence 9999953 23333333322214679999999888766655533322222111112111 1222222 22 2
Q ss_pred HHHHHHHHHHh--cCCCcEEEEecChhhH--------HHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEE
Q 007743 336 RFILLYSFLKR--NLSKKVMVFFSSCNSV--------KFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403 (591)
Q Consensus 336 k~~~l~~~l~~--~~~~~~iVF~~s~~~~--------~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vL 403 (591)
+...++..+.. ..+.++.|.|+-+++. ..+++.|+.. +..+..+||.|+..++..++..|++|+.+||
T Consensus 458 ~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 458 RRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 33334444433 2477888889876544 4555666543 5668999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCcEEEEcCCCC-ChhhhhhhccccccCCCCcceEEEEeChhh
Q 007743 404 LCTDVAARGLDIPAVDWIVQYDPPD-EPKEYIHRVGRTARGEGARGNALLFLIPEE 458 (591)
Q Consensus 404 vaT~~~~~GiDip~v~~VI~~~~P~-s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e 458 (591)
|||.|.+.|||+|+.+++|.++.-. ..++.-|-.||.|| |+..+.|++++.+..
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGR-G~~qSyC~Ll~~~~~ 592 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR-GDLQSYCVLLYKPPL 592 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCC-CCcceEEEEEeCCCC
Confidence 9999999999999999999988754 67888999999999 567899999999866
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3.5e-29 Score=277.66 Aligned_cols=315 Identities=19% Similarity=0.153 Sum_probs=206.3
Q ss_pred CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 122 FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 122 ~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
...|+|+|..+......+.-+++.||||+|||.++++++...+.. ....+++|..||+++++|+++.+..+....
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-----GLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 347999999886554456678999999999999987766543322 224579999999999999999998755422
Q ss_pred --CCeEEEEEcCccchHHH--------------------HHHhc-------CCCEEEeCchHHHHHHhcCCCCccCCc--
Q 007743 202 --SQTVGLVIGGSARRGEA--------------------ERIVK-------GVNLLVATPGRLLDHLQNTKGFIYKNL-- 250 (591)
Q Consensus 202 --~~~~~~~~gg~~~~~~~--------------------~~l~~-------~~~Iiv~Tp~~L~~~l~~~~~~~~~~l-- 250 (591)
...+.+.+|........ ..... -.+|+|||+..++..+-..+...++.+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 34566666654321110 01111 169999999988754433322222323
Q ss_pred --eEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHH-HHHhhCCCC--------CeEEEecCCC-cc
Q 007743 251 --KCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVED-LARLSFQTT--------PVYIDVDDGR-TK 318 (591)
Q Consensus 251 --~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~-l~~~~~~~~--------~~~i~~~~~~-~~ 318 (591)
++|||||+|.+-. -....+..++..+......+|++|||+|..... +...+-... |.+....... ..
T Consensus 439 a~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 439 GRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred ccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 5899999997632 223455566666555567899999999988754 433221110 1110000000 00
Q ss_pred --ccc----CCceeEEEe--c--Cc-hhHHHHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHcC---CCeEeccCcc
Q 007743 319 --VTN----EGLQQGYCV--V--PS-AKRFILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYIQ---VDCFDIHGKQ 383 (591)
Q Consensus 319 --~~~----~~l~~~~~~--~--~~-~~k~~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~---~~~~~lh~~~ 383 (591)
... ......+.. . .. .....++..++.. ..+++++|||||++.+..+++.|+..+ ..+..+||.+
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 000 001111111 1 11 1112223333332 346789999999999999999998764 6799999999
Q ss_pred CHHHHH----HHHHHh-hcCC---ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCC
Q 007743 384 KQQKRT----TTFFDF-CKAE---KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEG 445 (591)
Q Consensus 384 ~~~~R~----~~~~~F-~~g~---~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~ 445 (591)
+..+|. ++++.| ++|+ ..|||||+++++|||| +++++|....| .+.|+||+||++|.+.
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999994 567788 5565 4799999999999999 68999999888 7899999999999653
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.3e-28 Score=267.38 Aligned_cols=319 Identities=20% Similarity=0.276 Sum_probs=235.0
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHH-HHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAV-ELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l-~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
+|. .|+++|--..-.+..|+ |+.++||+|||+++.+|++ +.+ .|..+-|++||..||.|.++++..+.
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL--------~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL--------TGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 555 57889987776777775 9999999999999999996 554 24457899999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCCCC-----ccCCceEEEEeCchhhhc-c-------
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTKGF-----IYKNLKCLVIDEADRILE-A------- 264 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~-----~~~~l~~lVlDEah~l~~-~------- 264 (591)
.++++.+++++|+.+........ .++|+|+||++| +++|+..... .++.+.++||||||.|+= .
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 99999999999988776654443 489999999999 9999866422 367899999999998761 0
Q ss_pred --------ccHHHHHHHHHhCCCC-------C------------------------------------------------
Q 007743 265 --------NFEEEMRQIMKLLPKK-------D------------------------------------------------ 281 (591)
Q Consensus 265 --------~f~~~~~~i~~~l~~~-------~------------------------------------------------ 281 (591)
.+...+..+...+... .
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 1222333333333210 0
Q ss_pred -------------------------------------------------------------ccEEEEeccCchhHHHHHH
Q 007743 282 -------------------------------------------------------------RQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 282 -------------------------------------------------------------~q~ll~SAT~~~~~~~l~~ 300 (591)
..+.+||+|......++..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 1223334443333333333
Q ss_pred hhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEe
Q 007743 301 LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD 378 (591)
Q Consensus 301 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 378 (591)
.+-.. ++.+...... ..... ...+......|+..+...+.. ..+.++||||+|+..++.++..|...++++..
T Consensus 385 iY~l~---vv~IPtnkp~-~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 385 IYNLD---VVVIPTNRPM-IRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred HhCCC---EEEcCCCCCe-eeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 22111 1111111100 00000 112233456688888888855 56789999999999999999999999999999
Q ss_pred ccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCC--------------------------------------cE
Q 007743 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAV--------------------------------------DW 420 (591)
Q Consensus 379 lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v--------------------------------------~~ 420 (591)
+||. +.+|...+..|..+...|+|||++++||+||+-- =+
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9995 8899999999999999999999999999999643 26
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
||....|.|..---|-.|||||.| .+|.+..|++-+|.
T Consensus 538 VigTerhesrRid~QlrGRagRQG-dpGss~f~lSleD~ 575 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQG-DPGSSRFYLSLEDD 575 (830)
T ss_pred EEecccCchHHHHHHhhcccccCC-CCCceeEEEEcCcH
Confidence 888889999999999999999975 68999999987663
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=261.25 Aligned_cols=309 Identities=21% Similarity=0.221 Sum_probs=236.9
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.+.|+|+.+|..+-++..|+|+|.|.+|||.++-.+|.+.|. ...+||+.+|.++|.+|-|+.+..-. .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-------~kQRVIYTSPIKALSNQKYREl~~EF----~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-------EKQRVIYTSPIKALSNQKYRELLEEF----K 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-------hcCeEEeeChhhhhcchhHHHHHHHh----c
Confidence 589999999999999999999999999999999888887774 46789999999999999888776432 2
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCcc
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q 283 (591)
.|++.+|+...+-. +..+|+|.+.|..+|.++. -.++.+.|||+||+|.|-|...+-.|.+-+-.+|+ ..+
T Consensus 198 DVGLMTGDVTInP~-------ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~-~vr 268 (1041)
T KOG0948|consen 198 DVGLMTGDVTINPD-------ASCLVMTTEILRSMLYRGS-EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPD-NVR 268 (1041)
T ss_pred ccceeecceeeCCC-------CceeeeHHHHHHHHHhccc-hHhheeeeEEeeeehhccccccceeeeeeEEeccc-cce
Confidence 57888887665543 6899999999999998876 34688999999999999998777788887778888 899
Q ss_pred EEEEeccCchhHHHHHHhh--CCCCCeEEEecCCCcccccCCceeE---------EEecCch-----h------------
Q 007743 284 TALFSATQTKKVEDLARLS--FQTTPVYIDVDDGRTKVTNEGLQQG---------YCVVPSA-----K------------ 335 (591)
Q Consensus 284 ~ll~SAT~~~~~~~l~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~---------~~~~~~~-----~------------ 335 (591)
.+++|||+|+.. +++.+. ++..|..+.-.+.+ +..++++ |.+++.. +
T Consensus 269 ~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTdyR----PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 269 FVFLSATIPNAR-QFAEWICHIHKQPCHVVYTDYR----PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred EEEEeccCCCHH-HHHHHHHHHhcCCceEEeecCC----CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 999999999875 333332 22334433322211 1122222 2222211 1
Q ss_pred --------------------------HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc-----------------
Q 007743 336 --------------------------RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI----------------- 372 (591)
Q Consensus 336 --------------------------k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~----------------- 372 (591)
.+..+..++-.....++|||+-++++|+.++..+..+
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 1112333444445679999999999999998777543
Q ss_pred ----------------------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cCC
Q 007743 373 ----------------------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YDP 426 (591)
Q Consensus 373 ----------------------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~ 426 (591)
..++..+|+|+-+--+.-+.-.|.+|-+++|+||..++.|+|.|.-++|+- ||=
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 124678999999999999999999999999999999999999998777663 331
Q ss_pred ----CCChhhhhhhccccccCC-CCcceEEEEeChh
Q 007743 427 ----PDEPKEYIHRVGRTARGE-GARGNALLFLIPE 457 (591)
Q Consensus 427 ----P~s~~~y~qr~GR~gR~~-~~~g~~i~~~~~~ 457 (591)
..+.-.|+|++|||||.| +..|.||+++...
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 236778999999999977 5679999998763
No 90
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.3e-28 Score=261.95 Aligned_cols=149 Identities=20% Similarity=0.335 Sum_probs=130.3
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcE
Q 007743 105 DSLGLSQHTFRAIQ-----DMGFQFM---TQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTG 176 (591)
Q Consensus 105 ~~l~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 176 (591)
+.|.+.+.+.+.+. .+||..| ||+|.++||.++.+++++++|+||+|||++|++|++..++. +..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-------g~~ 137 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-------GKP 137 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-------cCC
Confidence 46778888888877 6899998 99999999999999999999999999999999999987764 224
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCCCCccC-------
Q 007743 177 VIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTKGFIYK------- 248 (591)
Q Consensus 177 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~~~~------- 248 (591)
++||+||++||.|+.+++..+..++++++++++||.+...+...+ +++|+|+||++| +++++... +.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~-~~~~~~~~vqr 214 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNS-IATRKEEQVGR 214 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCC-CCcCHHHhhcc
Confidence 899999999999999999999999999999999999888766544 599999999999 99998763 3333
Q ss_pred CceEEEEeCchhhhc
Q 007743 249 NLKCLVIDEADRILE 263 (591)
Q Consensus 249 ~l~~lVlDEah~l~~ 263 (591)
.+.++||||||.|+-
T Consensus 215 ~~~~~IIDEADsmLi 229 (970)
T PRK12899 215 GFYFAIIDEVDSILI 229 (970)
T ss_pred cccEEEEechhhhhh
Confidence 568999999998773
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=6.6e-28 Score=256.66 Aligned_cols=297 Identities=17% Similarity=0.186 Sum_probs=194.8
Q ss_pred EEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH---HH
Q 007743 143 LGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE---AE 219 (591)
Q Consensus 143 lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~ 219 (591)
++.|+||||||.+|+..+...+ . .+.++||++|+++|+.|+++.+++.. +..+..++++.+.... +.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHH
Confidence 4689999999999976654443 2 36689999999999999999887643 4567778887655433 33
Q ss_pred HHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc---c---HHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 220 RIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN---F---EEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 220 ~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~---f---~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
.+.. ..+|||+|+..+. ..+.++++|||||+|...-.+ . ..++........ +.+++++|||.+
T Consensus 71 ~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~--~~~vil~SATPs 140 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF--NCPVVLGSATPS 140 (505)
T ss_pred HHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc--CCCEEEEeCCCC
Confidence 3333 4799999998763 236789999999999876322 1 122333333333 688999999976
Q ss_pred hhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh----HHHHHHHHHHhc--CCCcEEEEecChhh-----
Q 007743 293 KKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK----RFILLYSFLKRN--LSKKVMVFFSSCNS----- 361 (591)
Q Consensus 293 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----k~~~l~~~l~~~--~~~~~iVF~~s~~~----- 361 (591)
.+....+.. .....+.+...........+ .+....... -...++..+... .++++|||+|++.-
T Consensus 141 les~~~~~~---g~~~~~~l~~r~~~~~~p~v--~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~ 215 (505)
T TIGR00595 141 LESYHNAKQ---KAYRLLVLTRRVSGRKPPEV--KLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLL 215 (505)
T ss_pred HHHHHHHhc---CCeEEeechhhhcCCCCCeE--EEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeE
Confidence 554443322 11222222111000000001 111111100 112334444332 35689999655321
Q ss_pred -------------------------------------------------------HHHHHHHHHHc--CCCeEeccCccC
Q 007743 362 -------------------------------------------------------VKFHSELLRYI--QVDCFDIHGKQK 384 (591)
Q Consensus 362 -------------------------------------------------------~~~l~~~L~~~--~~~~~~lh~~~~ 384 (591)
++++.+.|... +.++..+|++++
T Consensus 216 C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~ 295 (505)
T TIGR00595 216 CRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTT 295 (505)
T ss_pred hhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccc
Confidence 47777778776 678999999998
Q ss_pred HHHH--HHHHHHhhcCCccEEEEeCccccCCCCCCCcEEE--EcCC----CC------ChhhhhhhccccccCCCCcceE
Q 007743 385 QQKR--TTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIV--QYDP----PD------EPKEYIHRVGRTARGEGARGNA 450 (591)
Q Consensus 385 ~~~R--~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI--~~~~----P~------s~~~y~qr~GR~gR~~~~~g~~ 450 (591)
...+ ..+++.|.+|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||+||. +..|.+
T Consensus 296 ~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~-~~~g~v 374 (505)
T TIGR00595 296 SRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRA-EDPGQV 374 (505)
T ss_pred cCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCC-CCCCEE
Confidence 7766 8999999999999999999999999999999985 5664 32 246789999999995 467998
Q ss_pred EEEeChhhHHHHHHH
Q 007743 451 LLFLIPEELQFLRYL 465 (591)
Q Consensus 451 i~~~~~~e~~~~~~l 465 (591)
++.....+...++.+
T Consensus 375 iiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 375 IIQTYNPNHPAIQAA 389 (505)
T ss_pred EEEeCCCCCHHHHHH
Confidence 876544443444433
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.8e-28 Score=263.64 Aligned_cols=320 Identities=19% Similarity=0.247 Sum_probs=227.6
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|. .|+++|--+.-.+..|+ |+.+.||+|||++..+|++...+ .|..|-|++|+--||.|-++++..+..
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al-------~G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL-------TGKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH-------cCCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 554 68899987776777776 99999999999999999876654 477799999999999999999999999
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh-cc--------
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL-EA-------- 264 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~~-------- 264 (591)
++++.++++.++........ .-.++|+++|...| +++|+..- ....+.+.+.|+||+|.++ |.
T Consensus 147 ~LGl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiis 224 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIIS 224 (796)
T ss_pred hcCCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecC
Confidence 99999999988765544322 23589999999876 45555432 1224678899999999765 20
Q ss_pred -------ccHHHHHHHHHhCCCC-------------------C-------------------------------------
Q 007743 265 -------NFEEEMRQIMKLLPKK-------------------D------------------------------------- 281 (591)
Q Consensus 265 -------~f~~~~~~i~~~l~~~-------------------~------------------------------------- 281 (591)
.+...+..+...+... .
T Consensus 225 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~A 304 (796)
T PRK12906 225 GQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQA 304 (796)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHH
Confidence 0111222222221110 0
Q ss_pred -----------------------------------------------------------------------ccEEEEecc
Q 007743 282 -----------------------------------------------------------------------RQTALFSAT 290 (591)
Q Consensus 282 -----------------------------------------------------------------------~q~ll~SAT 290 (591)
.++.+||+|
T Consensus 305 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGT 384 (796)
T PRK12906 305 LRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGT 384 (796)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCC
Confidence 112222333
Q ss_pred CchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHH
Q 007743 291 QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSEL 368 (591)
Q Consensus 291 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~ 368 (591)
......++...+-. + ++.+...... .... ...........|...+...+.. ..+.++||||+|+..++.++..
T Consensus 385 a~~e~~Ef~~iY~l--~-vv~IPtnkp~-~r~d-~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 385 AKTEEEEFREIYNM--E-VITIPTNRPV-IRKD-SPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CHHHHHHHHHHhCC--C-EEEcCCCCCe-eeee-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 22222222221110 0 1111110000 0000 0112233456688888888754 3688999999999999999999
Q ss_pred HHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCC---CCc-----EEEEcCCCCChhhhhhhcccc
Q 007743 369 LRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP---AVD-----WIVQYDPPDEPKEYIHRVGRT 440 (591)
Q Consensus 369 L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~~~P~s~~~y~qr~GR~ 440 (591)
|...++++..+|+++.+.++..+...++.|. |+|||++++||+||+ +|. +||++++|.|...|.|+.|||
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888888887777 999999999999994 899 999999999999999999999
Q ss_pred ccCCCCcceEEEEeChhhH
Q 007743 441 ARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 441 gR~~~~~g~~i~~~~~~e~ 459 (591)
||.| .+|.+..|++.+|.
T Consensus 538 GRqG-~~G~s~~~~sleD~ 555 (796)
T PRK12906 538 GRQG-DPGSSRFYLSLEDD 555 (796)
T ss_pred ccCC-CCcceEEEEeccch
Confidence 9975 78999999998763
No 93
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.7e-28 Score=258.14 Aligned_cols=293 Identities=21% Similarity=0.294 Sum_probs=205.0
Q ss_pred CCcHHHHHhhccccC----CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLMV----GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~----g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.++++|.+++..+.. ++..++++|||+|||.+++..+-.. +..+|||+|+++|+.|+.+.+.....
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----------KRSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----------cCCEEEEECcHHHHHHHHHHHHHhcC
Confidence 689999999999988 8999999999999999876554332 23399999999999999866665433
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHH--HhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhC
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDH--LQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~--l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l 277 (591)
.. ..++.+.|+...... ..|+|+|...+... +.. +....+.+||+||||++....|. .+...+
T Consensus 106 ~~-~~~g~~~~~~~~~~~-------~~i~vat~qtl~~~~~l~~---~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~ 170 (442)
T COG1061 106 LN-DEIGIYGGGEKELEP-------AKVTVATVQTLARRQLLDE---FLGNEFGLIIFDEVHHLPAPSYR----RILELL 170 (442)
T ss_pred Cc-cccceecCceeccCC-------CcEEEEEhHHHhhhhhhhh---hcccccCEEEEEccccCCcHHHH----HHHHhh
Confidence 22 134444443322221 36999999998764 222 33457999999999998765543 344444
Q ss_pred CCCCccEEEEeccCchhH-HHHHHhhCCCCCeEEEec-------------------CCCccc---ccCCcee--------
Q 007743 278 PKKDRQTALFSATQTKKV-EDLARLSFQTTPVYIDVD-------------------DGRTKV---TNEGLQQ-------- 326 (591)
Q Consensus 278 ~~~~~q~ll~SAT~~~~~-~~l~~~~~~~~~~~i~~~-------------------~~~~~~---~~~~l~~-------- 326 (591)
.. ....+++|||++... ..+........+...... ...... .......
T Consensus 171 ~~-~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 171 SA-AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hc-ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 43 222899999977443 111111111112222221 100000 0000000
Q ss_pred ----------EEEecCchhHHHHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHh
Q 007743 327 ----------GYCVVPSAKRFILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF 395 (591)
Q Consensus 327 ----------~~~~~~~~~k~~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F 395 (591)
.........+...+..++..+ ...+++||+.+..++..++..|...++ +..+.|..+..+|..+++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 000111223334444455444 367999999999999999999988877 88999999999999999999
Q ss_pred hcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccC
Q 007743 396 CKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARG 443 (591)
Q Consensus 396 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~ 443 (591)
+.|.+.+||++.++..|+|+|+++++|...+..|...|+||+||.-|.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999999999993
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.5e-28 Score=265.35 Aligned_cols=356 Identities=21% Similarity=0.251 Sum_probs=260.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhhccccCCC-cEEEEccCCCCchHHhHHHHHHHHHhcccCC----CCCcEEEEEcC
Q 007743 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGK-DVLGAARTGSGKTLAFLIPAVELLYNAQFAP----RNGTGVIVICP 182 (591)
Q Consensus 108 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~-dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~----~~~~~~lil~P 182 (591)
.++.+-..++ .|...+.++|..+.+.++.+. ++++|||||+|||..+++-+|+.+....... ....++++++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 4666666655 456679999999999999874 8999999999999999999999987643211 12347899999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC-CCCc-cCCceEEEEeCchh
Q 007743 183 TRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT-KGFI-YKNLKCLVIDEADR 260 (591)
Q Consensus 183 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~-~~~~-~~~l~~lVlDEah~ 260 (591)
+++|++.+...+.+....+++.|.-.+|+.....+. ..+.+|+||||+..- .+.+. .... .+-++++|+||.|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999988899999999999987644332 245899999999873 34332 2111 23468999999996
Q ss_pred hhccccHHHHHHHHHhCC------CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCch
Q 007743 261 ILEANFEEEMRQIMKLLP------KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSA 334 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~------~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 334 (591)
+.+ +.++.+..|..... ....+.+++|||+|+- .+.+.......+..+..+ ....+..+.|.|+-+...
T Consensus 449 LhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd---~syRpvPL~qq~Igi~ek 523 (1674)
T KOG0951|consen 449 LHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFD---SSYRPVPLKQQYIGITEK 523 (1674)
T ss_pred ccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccC---cccCcCCccceEeccccC
Confidence 654 55677776655432 1367899999999975 333332222222222222 233455677777766543
Q ss_pred h---HHH----HH-HHHHHhcCCCcEEEEecChhhHHHHHHHHHH-----------------------------------
Q 007743 335 K---RFI----LL-YSFLKRNLSKKVMVFFSSCNSVKFHSELLRY----------------------------------- 371 (591)
Q Consensus 335 ~---k~~----~l-~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~----------------------------------- 371 (591)
. ++. +. -.++.....+++|||+.+++++...+..++.
T Consensus 524 ~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLk 603 (1674)
T KOG0951|consen 524 KPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLK 603 (1674)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHH
Confidence 3 222 22 2344445568999999999988877776652
Q ss_pred --cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cCC------CCChhhhhhhccc
Q 007743 372 --IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YDP------PDEPKEYIHRVGR 439 (591)
Q Consensus 372 --~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~------P~s~~~y~qr~GR 439 (591)
+..+++.+|+||+..+|..+.+.|..|.++|||+|-.+++|+|+|+-+++|- ||+ +.++.+..||.||
T Consensus 604 dLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 604 DLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred HHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 1356889999999999999999999999999999999999999999888874 664 4578999999999
Q ss_pred cccCC-CCcceEEEEeChhhHHHHHHHHHcCCCccc
Q 007743 440 TARGE-GARGNALLFLIPEELQFLRYLKAAKVPVKE 474 (591)
Q Consensus 440 ~gR~~-~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 474 (591)
|||-+ +..|..++.....|..+...+-+...|+++
T Consensus 684 agrp~~D~~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 684 AGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred cCCCccCcCCceeeccCchHhhhhHHhhhhcCCChH
Confidence 99954 456888888777787766665555566654
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=5.9e-28 Score=265.09 Aligned_cols=320 Identities=21% Similarity=0.212 Sum_probs=241.2
Q ss_pred HHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 116 AIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 116 ~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.....+| .|-++|++++-.+.+|..|+|+||||||||.+.-.++-..+. ++.++++++|.++|.+|.|..+.
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-------~~qrviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-------DGQRVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-------cCCceEeccchhhhhhhHHHHHH
Confidence 3445677 589999999999999999999999999999998877766654 46679999999999999988877
Q ss_pred HHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHH
Q 007743 196 DLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMK 275 (591)
Q Consensus 196 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~ 275 (591)
.........+++++|+...+.. +.++|+|.+.|.+++..+. ..+..+.+||+||+|.|.+...+..|+.++-
T Consensus 184 ~~fgdv~~~vGL~TGDv~IN~~-------A~clvMTTEILRnMlyrg~-~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 184 AKFGDVADMVGLMTGDVSINPD-------APCLVMTTEILRNMLYRGS-ESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred HHhhhhhhhccceecceeeCCC-------CceEEeeHHHHHHHhccCc-ccccccceEEEEeeeeccccccchhHHHHHH
Confidence 5543223446888888776654 7999999999999998875 6689999999999999999999999999999
Q ss_pred hCCCCCccEEEEeccCchhHHHHHHhhC--CCCCeEEEecCCCcccccCCceeEEEec-------Cchh-----------
Q 007743 276 LLPKKDRQTALFSATQTKKVEDLARLSF--QTTPVYIDVDDGRTKVTNEGLQQGYCVV-------PSAK----------- 335 (591)
Q Consensus 276 ~l~~~~~q~ll~SAT~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~~~-------~~~~----------- 335 (591)
++|. ..+++++|||+|+.. ++..+.- +..|..+...+.+ +..+.+++..- +...
T Consensus 256 ~lP~-~v~~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~~R----pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 256 LLPD-HVRFVFLSATVPNAE-EFAEWIQRVHSQPIHVVSTEHR----PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred hcCC-CCcEEEEeCCCCCHH-HHHHHHHhccCCCeEEEeecCC----CCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 9998 899999999999874 3333321 2334433332211 11122211111 0000
Q ss_pred ------------------------------------HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc-------
Q 007743 336 ------------------------------------RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI------- 372 (591)
Q Consensus 336 ------------------------------------k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~------- 372 (591)
+..-+...+......++|+|+-++..|+..+..+..+
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 0011333344444568999999999998877666421
Q ss_pred ---------------------CC-------------CeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCC
Q 007743 373 ---------------------QV-------------DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAV 418 (591)
Q Consensus 373 ---------------------~~-------------~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v 418 (591)
++ .+..+|++|=+..|..+...|..|-.+|++||.+++.|+|.|.-
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc
Confidence 11 24579999999999999999999999999999999999999987
Q ss_pred cEEEE----cC----CCCChhhhhhhccccccCC-CCcceEEEEeChh
Q 007743 419 DWIVQ----YD----PPDEPKEYIHRVGRTARGE-GARGNALLFLIPE 457 (591)
Q Consensus 419 ~~VI~----~~----~P~s~~~y~qr~GR~gR~~-~~~g~~i~~~~~~ 457 (591)
++|+- +| .+-++..|.|++|||||.| ...|.+++.-.+.
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 76652 32 3457899999999999976 5679998885553
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=4.2e-25 Score=239.37 Aligned_cols=320 Identities=18% Similarity=0.233 Sum_probs=223.6
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|. .++++|--.--.+..|+ |+.++||.|||++|.+|++...+. |..|.||+|++.||.|..+++..+..
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~-------g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT-------GKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc-------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 454 56788876555555565 999999999999999999866543 55699999999999999999999999
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCCCCc-----cCCceEEEEeCchhhhccc--------
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTKGFI-----YKNLKCLVIDEADRILEAN-------- 265 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~~-----~~~l~~lVlDEah~l~~~~-------- 265 (591)
+++++++++.++.+.... .-.-.++|+++||+.| +++|+.+-.+. .+.+.++|+||||.|+-..
T Consensus 149 ~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred hcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 999999999998775332 1122589999999999 99998763233 3778999999999876311
Q ss_pred --------cHHHHHHHHHhCCC------------------CCccEEEEe-------------------------------
Q 007743 266 --------FEEEMRQIMKLLPK------------------KDRQTALFS------------------------------- 288 (591)
Q Consensus 266 --------f~~~~~~i~~~l~~------------------~~~q~ll~S------------------------------- 288 (591)
+...+..+...+.. ...+.+.+|
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence 11122222222110 011112121
Q ss_pred --------------------------------------------------------------------------------
Q 007743 289 -------------------------------------------------------------------------------- 288 (591)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (591)
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence
Q ss_pred -----ccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhh
Q 007743 289 -----ATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNS 361 (591)
Q Consensus 289 -----AT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~ 361 (591)
+|......++...+-. .++.+..... ....... ..+......|+..+..-+.. ..+.++||||+|+..
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l---~Vv~IPTnkp-~~R~d~~-d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGL---DTVVVPTNRP-MVRKDMA-DLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hhcccCCChHHHHHHHHHhCC---CEEECCCCCC-ccceeCC-CcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 1111111111111000 0000000000 0000000 11222345667666665553 458899999999999
Q ss_pred HHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC------------------------
Q 007743 362 VKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA------------------------ 417 (591)
Q Consensus 362 ~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~------------------------ 417 (591)
++.++.+|...++++..+|+++++.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999962
Q ss_pred -------------CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 418 -------------VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 418 -------------v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
==+||-...+.|..-=-|-.||+||.| .+|.+..|++-+|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG-DAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCC-CCCceeEEEEeCcH
Confidence 127888889999999999999999975 78999999987664
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=4.2e-25 Score=242.74 Aligned_cols=320 Identities=20% Similarity=0.258 Sum_probs=239.6
Q ss_pred CCCHHHHHHHH-HCCCCCCcHHHHHhhcccc----CC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 108 GLSQHTFRAIQ-DMGFQFMTQIQARAVPPLM----VG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 108 ~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il----~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
+.+......+. .++|. -|+=|..||..+. ++ .|=++||..|-|||-+++=++...+. +|.+|.|+
T Consensus 578 ~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-------~GKQVAvL 649 (1139)
T COG1197 578 PPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-------DGKQVAVL 649 (1139)
T ss_pred CCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-------CCCeEEEE
Confidence 34445555554 46664 5999999998876 33 48899999999999998877776653 57899999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEe
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
+||.-||+|.|+.++.-...+++++..+.--.+..+.... +.. ..||||+|.-- |. +.+.++++++||||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L~--kdv~FkdLGLlIID 723 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----LS--KDVKFKDLGLLIID 723 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----hC--CCcEEecCCeEEEe
Confidence 9999999999999999888888998887665554444333 333 47999999743 32 23678999999999
Q ss_pred CchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhH
Q 007743 257 EADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR 336 (591)
Q Consensus 257 Eah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 336 (591)
|=|++- -.-.+-++.+.. +.-++-+|||.-|...++.-.+++. --+|...+. ..-.++.++...+..
T Consensus 724 EEqRFG-----Vk~KEkLK~Lr~-~VDvLTLSATPIPRTL~Msm~GiRd-lSvI~TPP~----~R~pV~T~V~~~d~~-- 790 (1139)
T COG1197 724 EEQRFG-----VKHKEKLKELRA-NVDVLTLSATPIPRTLNMSLSGIRD-LSVIATPPE----DRLPVKTFVSEYDDL-- 790 (1139)
T ss_pred chhhcC-----ccHHHHHHHHhc-cCcEEEeeCCCCcchHHHHHhcchh-hhhccCCCC----CCcceEEEEecCChH--
Confidence 999853 233444444554 7789999999999888877776654 222322221 111222222222222
Q ss_pred HHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccC
Q 007743 337 FILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARG 412 (591)
Q Consensus 337 ~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 412 (591)
++...|.+ ..++++-..+|..+..+.++..|+.+ ...+...||.|+..+-..++..|.+|+.+|||||.+.+.|
T Consensus 791 --~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtG 868 (1139)
T COG1197 791 --LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETG 868 (1139)
T ss_pred --HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecC
Confidence 22222222 23678888889999999999999987 4568899999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCC-ChhhhhhhccccccCCCCcceEEEEeChh
Q 007743 413 LDIPAVDWIVQYDPPD-EPKEYIHRVGRTARGEGARGNALLFLIPE 457 (591)
Q Consensus 413 iDip~v~~VI~~~~P~-s~~~y~qr~GR~gR~~~~~g~~i~~~~~~ 457 (591)
||||+++.+|..+.-. ..++.+|..||+||. +..+.|++++.+.
T Consensus 869 IDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS-~~~AYAYfl~p~~ 913 (1139)
T COG1197 869 IDIPNANTIIIERADKFGLAQLYQLRGRVGRS-NKQAYAYFLYPPQ 913 (1139)
T ss_pred cCCCCCceEEEeccccccHHHHHHhccccCCc-cceEEEEEeecCc
Confidence 9999999998766543 578999999999995 5789999999874
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=2.2e-25 Score=254.40 Aligned_cols=319 Identities=17% Similarity=0.203 Sum_probs=200.6
Q ss_pred CCCcHHHHHhhcccc----C-CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLM----V-GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il----~-g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..++++|.++|..+. . .+.++++++||||||.+++ .++..+++. ....++|+|+|+++|+.|+.+.+..+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~----~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA----KRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc----CccCeEEEEecHHHHHHHHHHHHHhc
Confidence 358999999998765 3 3679999999999998843 344555443 23468999999999999999988876
Q ss_pred HhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC----CCCccCCceEEEEeCchhhhc---------c
Q 007743 198 LKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT----KGFIYKNLKCLVIDEADRILE---------A 264 (591)
Q Consensus 198 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~----~~~~~~~l~~lVlDEah~l~~---------~ 264 (591)
.......+..+++...... ........|+|+|...|...+... ..+.+..+++||+||||+-.. .
T Consensus 487 ~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 3221111111111110000 011234799999999987665321 113467889999999998531 1
Q ss_pred ------ccHHHHHHHHHhCCCCCccEEEEeccCchhHHH-------------HHHhhCCC---CCeEEEecCCCccccc-
Q 007743 265 ------NFEEEMRQIMKLLPKKDRQTALFSATQTKKVED-------------LARLSFQT---TPVYIDVDDGRTKVTN- 321 (591)
Q Consensus 265 ------~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~-------------l~~~~~~~---~~~~i~~~~~~~~~~~- 321 (591)
++...+..++.+. +...++||||+...... .+..++.- .|..+...........
T Consensus 565 ~~~~~~~~~~~yr~iL~yF---dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYF---DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred ccchhhhHHHHHHHHHhhc---CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 1235667777654 34679999997643321 11111111 1222221100000000
Q ss_pred --------CCceeEE--EecCc---------------hhHHHH----HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc
Q 007743 322 --------EGLQQGY--CVVPS---------------AKRFIL----LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI 372 (591)
Q Consensus 322 --------~~l~~~~--~~~~~---------------~~k~~~----l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 372 (591)
......+ ...+. ...... +...+.....+++||||.++.+++.+...|...
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 0000000 00000 001111 222222233579999999999999998887653
Q ss_pred ------CC---CeEeccCccCHHHHHHHHHHhhcCCc-cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhcccccc
Q 007743 373 ------QV---DCFDIHGKQKQQKRTTTFFDFCKAEK-GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442 (591)
Q Consensus 373 ------~~---~~~~lh~~~~~~~R~~~~~~F~~g~~-~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR 442 (591)
+. .+..+||+++ .+..+++.|+++.. .|+|+++++.+|+|+|.|++||++.++.|...|+||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 22 4567899886 46789999999886 699999999999999999999999999999999999999999
Q ss_pred CCC--CcceEEEE
Q 007743 443 GEG--ARGNALLF 453 (591)
Q Consensus 443 ~~~--~~g~~i~~ 453 (591)
... .+..+++|
T Consensus 800 ~~~~~~K~~f~I~ 812 (1123)
T PRK11448 800 LCPEIGKTHFRIF 812 (1123)
T ss_pred CCccCCCceEEEE
Confidence 643 23444444
No 99
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4.3e-26 Score=210.43 Aligned_cols=167 Identities=35% Similarity=0.538 Sum_probs=142.8
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeE
Q 007743 126 TQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV 205 (591)
Q Consensus 126 ~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~ 205 (591)
||+|.++++.+.+|+++++.||||+|||++|++|+++.+.+. ....+||++|+++|+.|+++.+..+....+..+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-----~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-----KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-----CCceEEEEeeccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988763 234899999999999999999999988877889
Q ss_pred EEEEcCccch-HHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC-CCcc
Q 007743 206 GLVIGGSARR-GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK-KDRQ 283 (591)
Q Consensus 206 ~~~~gg~~~~-~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~-~~~q 283 (591)
..++|+.... .....+..+++|+|+||++|.+++.... ..+.++++||+||+|.+...++...+..|+..+.. .+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred ccccccccccccccccccccccccccCcchhhccccccc-cccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 9999988755 3334445679999999999999998855 36667999999999999988888889999888744 2688
Q ss_pred EEEEeccCchhHHHH
Q 007743 284 TALFSATQTKKVEDL 298 (591)
Q Consensus 284 ~ll~SAT~~~~~~~l 298 (591)
++++|||+++.++++
T Consensus 155 ~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 155 IILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEESSSTHHHHHH
T ss_pred EEEEeeCCChhHhhC
Confidence 999999999776653
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.3e-25 Score=245.61 Aligned_cols=308 Identities=19% Similarity=0.294 Sum_probs=217.7
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeE
Q 007743 126 TQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV 205 (591)
Q Consensus 126 ~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~ 205 (591)
+....+.+..+..++-++++|+||||||.. +| +.++...+ ..+..+.+.-|.|--|..+.+.+. ..++..+
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP--~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvA---eel~~~~ 122 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LP--QFLLEEGL--GIAGKIGCTQPRRLAARSVAERVA---EELGEKL 122 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HH--HHHHhhhc--ccCCeEEecCchHHHHHHHHHHHH---HHhCCCc
Confidence 445556666677788899999999999988 44 33333332 234456777799977777665544 3344444
Q ss_pred EEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-hhhccccHH-HHHHHHHhCCCCCcc
Q 007743 206 GLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD-RILEANFEE-EMRQIMKLLPKKDRQ 283 (591)
Q Consensus 206 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah-~l~~~~f~~-~~~~i~~~l~~~~~q 283 (591)
+..+|-.-..+. .....+.|-++|.|.|++.+.+.+ .++.+++||||||| +-++.+|.- .+..++..++. +.+
T Consensus 123 G~~VGY~iRfe~--~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~-DLK 197 (845)
T COG1643 123 GETVGYSIRFES--KVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD-DLK 197 (845)
T ss_pred CceeeEEEEeec--cCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC-Cce
Confidence 433433222221 112347899999999999998775 57999999999999 555544432 33445556664 689
Q ss_pred EEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC-chh----HHHHHHHHHHhcCCCcEEEEecC
Q 007743 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP-SAK----RFILLYSFLKRNLSKKVMVFFSS 358 (591)
Q Consensus 284 ~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~----k~~~l~~~l~~~~~~~~iVF~~s 358 (591)
+|++|||+..+ .+.. ++.+.| ++.+.... ..+..+|.... ... .+...+........+.+|||.+.
T Consensus 198 iIimSATld~~--rfs~-~f~~ap-vi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG 268 (845)
T COG1643 198 LIIMSATLDAE--RFSA-YFGNAP-VIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPG 268 (845)
T ss_pred EEEEecccCHH--HHHH-HcCCCC-EEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCc
Confidence 99999999854 3444 444434 34443311 12333442222 222 22223333334558899999999
Q ss_pred hhhHHHHHHHHHH--c--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCC--------
Q 007743 359 CNSVKFHSELLRY--I--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDP-------- 426 (591)
Q Consensus 359 ~~~~~~l~~~L~~--~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~-------- 426 (591)
..+++.+++.|.. + .+.++++||.|+.++..++++.-..|+.+|++||++++.+|.||+|++||.-+.
T Consensus 269 ~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 269 QREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred HHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 9999999999997 3 477999999999999999998888888889999999999999999999997443
Q ss_pred ----------CCChhhhhhhccccccCCCCcceEEEEeChhh
Q 007743 427 ----------PDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458 (591)
Q Consensus 427 ----------P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e 458 (591)
|.|-++..||.|||||.+ .|.|+-+|+.++
T Consensus 349 ~~g~~~L~~~~ISqAsA~QRaGRAGR~~--pGicyRLyse~~ 388 (845)
T COG1643 349 RTGLTRLETEPISKASADQRAGRAGRTG--PGICYRLYSEED 388 (845)
T ss_pred ccCceeeeEEEechhhhhhhccccccCC--CceEEEecCHHH
Confidence 457888999999999974 799999999754
No 101
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=231.27 Aligned_cols=308 Identities=19% Similarity=0.285 Sum_probs=217.7
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeE
Q 007743 126 TQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV 205 (591)
Q Consensus 126 ~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~ 205 (591)
...-.+.+..+-+++-+|+.|+||||||.. +| +.|++..+... | .+.+.-|.|-.|..++.... ..++...
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~~~-g-~I~~TQPRRVAavslA~RVA---eE~~~~l 123 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFASS-G-KIACTQPRRVAAVSLAKRVA---EEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcccccC-C-cEEeecCchHHHHHHHHHHH---HHhCCCc
Confidence 334445666667888899999999999988 44 77777766643 2 27788899999888665443 3333333
Q ss_pred EEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh-hhccc-cHHHHHHHHHhCCCCCcc
Q 007743 206 GLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR-ILEAN-FEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 206 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~-l~~~~-f~~~~~~i~~~l~~~~~q 283 (591)
+..+|-.-..++. ....+.|.+.|.|.|++.+...+ .++.+++|||||||. -+..+ ....+..|+...+ ..+
T Consensus 124 G~~VGY~IRFed~--ts~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~--~Lk 197 (674)
T KOG0922|consen 124 GEEVGYTIRFEDS--TSKDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP--DLK 197 (674)
T ss_pred CceeeeEEEeccc--CCCceeEEEecchHHHHHHhcCC--ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC--Cce
Confidence 3333322111111 11237899999999999888765 578999999999993 22211 1123344444433 578
Q ss_pred EEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh----HHHHHHHHHHhcCCCcEEEEecCh
Q 007743 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK----RFILLYSFLKRNLSKKVMVFFSSC 359 (591)
Q Consensus 284 ~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----k~~~l~~~l~~~~~~~~iVF~~s~ 359 (591)
++++|||+..+ ....+|.+-| ++.+... ...+...|...+..+ -+..+.++....+.+.+|||....
T Consensus 198 lIimSATlda~---kfS~yF~~a~-i~~i~GR-----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAP-ILTIPGR-----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQ 268 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCc-eEeecCC-----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCH
Confidence 99999999843 3344555433 3444321 122444455444333 334455566667788999999999
Q ss_pred hhHHHHHHHHHHc----CC----CeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC------
Q 007743 360 NSVKFHSELLRYI----QV----DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD------ 425 (591)
Q Consensus 360 ~~~~~l~~~L~~~----~~----~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~------ 425 (591)
++++.+++.|.+. +- -+.++||.|+.++..+++..-..|..+|++||++++..|.||++.+||+-+
T Consensus 269 eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 9999999999875 11 257899999999999999998899999999999999999999999999744
Q ss_pred ------------CCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 426 ------------PPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 426 ------------~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
.|-|.++-.||+|||||.+ +|.|+-+|+.++.
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~--pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRTG--PGKCYRLYTESAY 392 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCCC--CceEEEeeeHHHH
Confidence 2668889999999999964 7999999998765
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=5.8e-24 Score=202.36 Aligned_cols=308 Identities=22% Similarity=0.292 Sum_probs=217.2
Q ss_pred CCcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.++|.|+.+-..++ +.++.++.|-||+|||-. +.+.++..++ .|.++.|.+|....|.+++..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~a-- 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQA-- 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHh--
Confidence 58999988766554 668999999999999976 3445555554 5888999999999999999998865
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~ 279 (591)
+.+..+.+++|++..... .+++|+|...|+..- ..++++||||+|.+.-.. ...+...++.-.+
T Consensus 168 F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark 231 (441)
T COG4098 168 FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFSD-DQSLQYAVKKARK 231 (441)
T ss_pred hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH--------hhccEEEEeccccccccC-CHHHHHHHHHhhc
Confidence 445678889998765543 689999998887644 346899999999764211 2344444555445
Q ss_pred CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH------HHHHHHHHhc--CCCc
Q 007743 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF------ILLYSFLKRN--LSKK 351 (591)
Q Consensus 280 ~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~------~~l~~~l~~~--~~~~ 351 (591)
...-++.+|||.++.++.-+.. .+-..+.+.. +....+-.+..++..-+..+++ ..|..+|+.. .+.+
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~---g~~~~~klp~-RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILK---GNLRILKLPA-RFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred ccCceEEEecCChHHHHHHhhh---CCeeEeecch-hhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 5678999999999877544332 2222233322 1111122222333333333333 2566677653 4689
Q ss_pred EEEEecChhhHHHHHHHHHH-cC-CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEc-CCC-
Q 007743 352 VMVFFSSCNSVKFHSELLRY-IQ-VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQY-DPP- 427 (591)
Q Consensus 352 ~iVF~~s~~~~~~l~~~L~~-~~-~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~-~~P- 427 (591)
++||++++...+.++..|+. .. ..+...|+.- ..|.+..+.|++|+..+||+|.+++||+.+|+|++++.- .-+
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 99999999999999999944 33 3446677764 478999999999999999999999999999999986643 222
Q ss_pred CChhhhhhhccccccCC-CCcceEEEEeChhhHHHH
Q 007743 428 DEPKEYIHRVGRTARGE-GARGNALLFLIPEELQFL 462 (591)
Q Consensus 428 ~s~~~y~qr~GR~gR~~-~~~g~~i~~~~~~e~~~~ 462 (591)
.+-+..+|.+||+||.- ...|.++.|.-.....+.
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 57788999999999954 345777766554444443
No 103
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.3e-25 Score=231.38 Aligned_cols=308 Identities=22% Similarity=0.267 Sum_probs=212.5
Q ss_pred HHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCC---CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEE
Q 007743 130 ARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPR---NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVG 206 (591)
Q Consensus 130 ~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~---~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~ 206 (591)
++++..|..+--+|+||.||||||.. +| |.|+...+... ++..+-|.-|.|-.|.-+.+....-+..++..|+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs 337 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS 337 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCcccee
Confidence 45566666777899999999999987 55 77887766532 2334567779999988766655433333454554
Q ss_pred EEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh-c----cccHHHHHHHHHhCCC--
Q 007743 207 LVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-E----ANFEEEMRQIMKLLPK-- 279 (591)
Q Consensus 207 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~-~----~~f~~~~~~i~~~l~~-- 279 (591)
..+--... +.....|.++|.|.|+.-+.+. |.|+.+++|||||||.=. . .|....+-.+.....+
T Consensus 338 YqIRfd~t------i~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 338 YQIRFDGT------IGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEEEeccc------cCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 33221111 1123789999999999999875 788999999999999422 1 1211222222222211
Q ss_pred ---CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEE-ecCc---hhHHHHHHHHHHhcCCCcE
Q 007743 280 ---KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYC-VVPS---AKRFILLYSFLKRNLSKKV 352 (591)
Q Consensus 280 ---~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-~~~~---~~k~~~l~~~l~~~~~~~~ 352 (591)
.+...|+||||+--....-.+..|...|.+|.++......+ -+|. ..+. .+.+...+.+.+..+.+.+
T Consensus 410 ~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVs-----IHF~krT~~DYi~eAfrKtc~IH~kLP~G~I 484 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVS-----IHFNKRTPDDYIAEAFRKTCKIHKKLPPGGI 484 (1172)
T ss_pred cccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceE-----EEeccCCCchHHHHHHHHHHHHhhcCCCCcE
Confidence 35679999999864322212233444555777765332221 1121 1122 2344456667777889999
Q ss_pred EEEecChhhHHHHHHHHHHc------------------------------------------------------------
Q 007743 353 MVFFSSCNSVKFHSELLRYI------------------------------------------------------------ 372 (591)
Q Consensus 353 iVF~~s~~~~~~l~~~L~~~------------------------------------------------------------ 372 (591)
|||+....++.+++..|+..
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 99999999999999999751
Q ss_pred ---------------------------------------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCC
Q 007743 373 ---------------------------------------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL 413 (591)
Q Consensus 373 ---------------------------------------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gi 413 (591)
.+-|+++++-++.+.+.+++..-..|..-++|||+|++..+
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 02267889999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcC--------CCC----------ChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 414 DIPAVDWIVQYD--------PPD----------EPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 414 Dip~v~~VI~~~--------~P~----------s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
.||+|.+||..+ --. |-++--||+|||||.| .|.|+-+|+.
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg--pGHcYRLYSS 703 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG--PGHCYRLYSS 703 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC--CCceeehhhh
Confidence 999999999744 333 4445579999999986 7999999986
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=236.17 Aligned_cols=345 Identities=19% Similarity=0.158 Sum_probs=242.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhh--ccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 108 GLSQHTFRAIQDMGFQFMTQIQARAV--PPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 108 ~l~~~l~~~l~~~~~~~~~~~Q~~~i--~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
+++....-.....|...++.||.+++ |.++.++++|..+||+.|||++.-+-++..++.. +..++.+.|...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~------rr~~llilp~vs 280 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR------RRNVLLILPYVS 280 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH------hhceeEecceee
Confidence 33333444455789999999999987 5688999999999999999999998888877653 455889999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC-CCccCCceEEEEeCchhhhcc
Q 007743 186 LAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK-GFIYKNLKCLVIDEADRILEA 264 (591)
Q Consensus 186 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-~~~~~~l~~lVlDEah~l~~~ 264 (591)
.++.-...+..+....|+.+....|....... ++...+.|||-++-..++...- .-.+..+++||+||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 99888888888888888888887766554433 2346899999998644332210 013567899999999999998
Q ss_pred ccHHHHHHHHHhC----CCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 265 NFEEEMRQIMKLL----PKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 265 ~f~~~~~~i~~~l----~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
+.+..++.++..+ .....|++.+|||+++. ..+..+ +.. ..+. ...+.....+.+.-........ +...+
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~lL~~~-L~A-~~y~--t~fRPv~L~E~ik~G~~i~~~~-r~~~l 430 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNN-SLLQDW-LDA-FVYT--TRFRPVPLKEYIKPGSLIYESS-RNKVL 430 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCCh-HHHHHH-hhh-hhee--cccCcccchhccCCCcccccch-hhHHH
Confidence 8777777776543 22246799999999874 223222 111 1111 0000000000000000000000 11111
Q ss_pred HHH-------------------HHh--cCCCcEEEEecChhhHHHHHHHHHHc---------------------------
Q 007743 341 YSF-------------------LKR--NLSKKVMVFFSSCNSVKFHSELLRYI--------------------------- 372 (591)
Q Consensus 341 ~~~-------------------l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~--------------------------- 372 (591)
..+ ... ..+..+||||+++..|+.++..+...
T Consensus 431 r~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~ 510 (1008)
T KOG0950|consen 431 REIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIP 510 (1008)
T ss_pred HHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCC
Confidence 111 111 11346999999999999887665431
Q ss_pred -----------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC----CCCChhhhhhhc
Q 007743 373 -----------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD----PPDEPKEYIHRV 437 (591)
Q Consensus 373 -----------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~----~P~s~~~y~qr~ 437 (591)
..++..+|++++..+|..+...|++|...|++||+.++.|++.|..+++|-+- .+.+.-.|.||+
T Consensus 511 ~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 511 GILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred cccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence 24578899999999999999999999999999999999999999999988643 345788999999
Q ss_pred cccccCC-CCcceEEEEeChhhHHHHHHHHHc
Q 007743 438 GRTARGE-GARGNALLFLIPEELQFLRYLKAA 468 (591)
Q Consensus 438 GR~gR~~-~~~g~~i~~~~~~e~~~~~~l~~~ 468 (591)
|||||+| +..|.+++++.+.+...+..+...
T Consensus 591 GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~ 622 (1008)
T KOG0950|consen 591 GRAGRTGIDTLGDSILIIKSSEKKRVRELVNS 622 (1008)
T ss_pred hhhhhcccccCcceEEEeeccchhHHHHHHhc
Confidence 9999987 678999999999998776666543
No 105
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=221.80 Aligned_cols=308 Identities=19% Similarity=0.239 Sum_probs=222.7
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
...++-.+.+.++..++-+|+.|.||||||.. || |.|+...+... |.++-+.-|.|-.|+.+...+ +..++.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGytk~-gk~IgcTQPRRVAAmSVAaRV---A~EMgv 336 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYTKG-GKKIGCTQPRRVAAMSVAARV---AEEMGV 336 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhcccccC-CceEeecCcchHHHHHHHHHH---HHHhCc
Confidence 34455556666777888999999999999987 55 77877766543 445677789999999866543 444454
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-hhhccc-cHHHHHHHHHhCCCCC
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD-RILEAN-FEEEMRQIMKLLPKKD 281 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah-~l~~~~-f~~~~~~i~~~l~~~~ 281 (591)
+.+.-+|-.-...... ....-|-++|.|+|+.-+... ..|.+++++|||||| +-+..+ ....+..|....| .
T Consensus 337 kLG~eVGYsIRFEdcT--SekTvlKYMTDGmLlREfL~e--pdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp--d 410 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCT--SEKTVLKYMTDGMLLREFLSE--PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP--D 410 (902)
T ss_pred ccccccceEEEecccc--CcceeeeeecchhHHHHHhcc--ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC--c
Confidence 4444444332222211 133567899999999887665 468999999999999 333211 2234445555544 7
Q ss_pred ccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHH----HhcCCCcEEEEec
Q 007743 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFL----KRNLSKKVMVFFS 357 (591)
Q Consensus 282 ~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l----~~~~~~~~iVF~~ 357 (591)
..+++.|||+..+- ...+|...|++..... .-.+.-+|...+..+-+.+.+.-+ ...+.+.+|||..
T Consensus 411 LKllIsSAT~DAek---FS~fFDdapIF~iPGR------RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 411 LKLLISSATMDAEK---FSAFFDDAPIFRIPGR------RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred ceEEeeccccCHHH---HHHhccCCcEEeccCc------ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 88999999988542 3446666666543221 223455677777766555443333 2345789999999
Q ss_pred ChhhHHHHHHHHHHc---------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCC--
Q 007743 358 SCNSVKFHSELLRYI---------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDP-- 426 (591)
Q Consensus 358 s~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~-- 426 (591)
..++.+...+.|... .+-++++|+.+|...+..+++.-..|..+|++||++++..|.|++|.+||.-++
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 999998888877654 345889999999999999999999999999999999999999999999997442
Q ss_pred ----------------CCChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 427 ----------------PDEPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 427 ----------------P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
|.|.++-.||+|||||.| +|+|+-+|+.
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg--PGKCfRLYt~ 605 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTG--PGKCFRLYTA 605 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCC--CCceEEeech
Confidence 557788899999999986 7999999984
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=2.3e-23 Score=233.63 Aligned_cols=319 Identities=18% Similarity=0.240 Sum_probs=212.5
Q ss_pred CCcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.|+++|.+++.+++ .|.+.|++..+|.|||+..+. ++..+.... .....+|||||. .+..||...+.+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~---~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR---GITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc---CCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 68999999999875 578899999999999998643 334443211 122358999996 555777777777653
Q ss_pred hcCCeEEEEEcCccchHHHHH---HhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHh
Q 007743 200 YHSQTVGLVIGGSARRGEAER---IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~---l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~ 276 (591)
...+..++|.......... .....+|+|+|++.+...... +.--.+.+||+||||++-.. ...+..++..
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 3455556665433222111 123579999999998664432 22345789999999998653 3445566666
Q ss_pred CCCCCccEEEEeccCch-hHHHHHHhh--C------------------------------------------------CC
Q 007743 277 LPKKDRQTALFSATQTK-KVEDLARLS--F------------------------------------------------QT 305 (591)
Q Consensus 277 l~~~~~q~ll~SAT~~~-~~~~l~~~~--~------------------------------------------------~~ 305 (591)
+. ....+++|+|+-. .+.++..+. + .-
T Consensus 317 L~--a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 317 FS--TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred hh--cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 65 3456889999432 111111100 0 00
Q ss_pred CCe---EEEecCCCcc------------------cccC-------Cce----eE-----------E----EecCchhHHH
Q 007743 306 TPV---YIDVDDGRTK------------------VTNE-------GLQ----QG-----------Y----CVVPSAKRFI 338 (591)
Q Consensus 306 ~~~---~i~~~~~~~~------------------~~~~-------~l~----~~-----------~----~~~~~~~k~~ 338 (591)
+|. .+.+.-.... .... .+. +- + ..+....|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 010 1111100000 0000 000 00 0 0011235666
Q ss_pred HHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcC---CccEEEEeCccccCC
Q 007743 339 LLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA---EKGILLCTDVAARGL 413 (591)
Q Consensus 339 ~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g---~~~vLvaT~~~~~Gi 413 (591)
+|..++.. ..+.++|||+........+..+|...++.++.+||+++..+|..+++.|+.. ...+|++|.+++.||
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 77777654 3467999999999999999999999999999999999999999999999863 346789999999999
Q ss_pred CCCCCcEEEEcCCCCChhhhhhhccccccCCCCcc-eEEEEeCh
Q 007743 414 DIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARG-NALLFLIP 456 (591)
Q Consensus 414 Dip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g-~~i~~~~~ 456 (591)
|+..+++||+||+|++|..+.|++||+.|.|.... .++.|++.
T Consensus 555 NLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 555 NLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred chhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 99999999999999999999999999999975433 24444554
No 107
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=7.3e-23 Score=209.57 Aligned_cols=307 Identities=16% Similarity=0.244 Sum_probs=208.2
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
....++.+.+..+-.++-+++.+.||||||.. +-+.|+...+.. ...+-+.-|.|..|..+...+ ...++.
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrV---a~EM~~ 426 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRV---AEEMGV 426 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhccccc--CCeeeecCchHHHHHHHHHHH---HHHhCC
Confidence 34455555666666788899999999999988 447777765543 223455669999998866544 444544
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-hhhccccH-HHHHHHHHhCCCCC
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD-RILEANFE-EEMRQIMKLLPKKD 281 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah-~l~~~~f~-~~~~~i~~~l~~~~ 281 (591)
..+..+|-.-..+... .....|-++|.|.|++..-... .|..+++||+|||| +-++.+.. ..+..++.... +
T Consensus 427 ~lG~~VGYsIRFEdvT--~~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~larRr--d 500 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVT--SEDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR--D 500 (1042)
T ss_pred ccccccceEEEeeecC--CCceeEEEeccchHHHHHhhhh--hhhheeEEEechhhhcccchHHHHHHHHHHHHhhc--c
Confidence 4444444332222211 1236788999999977554433 57889999999999 33332211 12233333332 7
Q ss_pred ccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHH-HHH---HhcCCCcEEEEec
Q 007743 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY-SFL---KRNLSKKVMVFFS 357 (591)
Q Consensus 282 ~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~-~~l---~~~~~~~~iVF~~ 357 (591)
..+|+.|||+.. ..+.. +|.+-|.+. +.. ..-.+...|...+..+-..... ..+ .....+.+|||..
T Consensus 501 lKliVtSATm~a--~kf~n-fFgn~p~f~-IpG-----RTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 501 LKLIVTSATMDA--QKFSN-FFGNCPQFT-IPG-----RTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred ceEEEeeccccH--HHHHH-HhCCCceee-ecC-----CccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecC
Confidence 889999999874 34444 455444433 221 1112344455555544333222 222 2244688999999
Q ss_pred ChhhHHHHHHHHHH----c------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC--
Q 007743 358 SCNSVKFHSELLRY----I------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD-- 425 (591)
Q Consensus 358 s~~~~~~l~~~L~~----~------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~-- 425 (591)
..+.++..+..+.. + ++.++++++.||+..+.++++.-..|..++||||++++..|.+|++.+||..+
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 98877766655543 2 57799999999999999999988889999999999999999999999999854
Q ss_pred ----------------CCCChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 426 ----------------PPDEPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 426 ----------------~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
.|.|-+.--||+|||||.| +|.|+-+|+.
T Consensus 652 K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~--pG~cYRlYTe 696 (1042)
T KOG0924|consen 652 KLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG--PGTCYRLYTE 696 (1042)
T ss_pred eeeecccccccceeEEEechhccchhhccccCCCC--Ccceeeehhh
Confidence 3668888899999999975 7999999986
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.3e-21 Score=209.91 Aligned_cols=281 Identities=25% Similarity=0.295 Sum_probs=195.5
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.|| .|+..|+--...++.|+..-+.||||.|||.--++.. ..+. ..|.+++||+||+.|+.|+++.+..++.
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~s--l~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMS--LYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHH--HHHH-----hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 455 8999999999999999999999999999996533322 2222 2468899999999999999999999987
Q ss_pred hcC-CeEEEEEcCc-cchH---HHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcc---------
Q 007743 200 YHS-QTVGLVIGGS-ARRG---EAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA--------- 264 (591)
Q Consensus 200 ~~~-~~~~~~~gg~-~~~~---~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~--------- 264 (591)
..+ ..+..++.+. .... ...++. .+.+|+|+|..-|...+..-. --+++++++|.+|.++..
T Consensus 151 ~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS---KLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCCCEEEEccHHHHHhccccHHHHHH
Confidence 666 4443333333 2222 223343 358999999988876665432 246899999999987752
Q ss_pred --ccHHH-------HHHHHHhC-----------------------CCCCccEEEEeccCchhH--HHHHHhhCCCCCeEE
Q 007743 265 --NFEEE-------MRQIMKLL-----------------------PKKDRQTALFSATQTKKV--EDLARLSFQTTPVYI 310 (591)
Q Consensus 265 --~f~~~-------~~~i~~~l-----------------------~~~~~q~ll~SAT~~~~~--~~l~~~~~~~~~~~i 310 (591)
||... +..+...+ ..+..++++.|||..+.- ..+.+..+.-.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe---- 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE---- 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc----
Confidence 33221 11111111 112467899999987653 23333333221
Q ss_pred EecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecC---hhhHHHHHHHHHHcCCCeEeccCccCHHH
Q 007743 311 DVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSS---CNSVKFHSELLRYIQVDCFDIHGKQKQQK 387 (591)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s---~~~~~~l~~~L~~~~~~~~~lh~~~~~~~ 387 (591)
+ +.......++...|...+...+ +..+++.. +...|||++. ++.++.+++.|+..|+++..+|+.
T Consensus 304 -v--G~~~~~LRNIvD~y~~~~~~e~---~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~----- 371 (1187)
T COG1110 304 -V--GSGGEGLRNIVDIYVESESLEK---VVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE----- 371 (1187)
T ss_pred -c--CccchhhhheeeeeccCccHHH---HHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----
Confidence 1 1122333445555555544444 34444443 5588999999 899999999999999999999984
Q ss_pred HHHHHHHhhcCCccEEEEe----CccccCCCCCC-CcEEEEcCCC
Q 007743 388 RTTTFFDFCKAEKGILLCT----DVAARGLDIPA-VDWIVQYDPP 427 (591)
Q Consensus 388 R~~~~~~F~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~~~P 427 (591)
....++.|..|+++|||.. .++.||||+|. ++++|+|++|
T Consensus 372 ~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 2678999999999999975 47899999997 8899999988
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=5.1e-23 Score=229.39 Aligned_cols=335 Identities=20% Similarity=0.184 Sum_probs=218.4
Q ss_pred CcHHHHHhhccccCC---C-cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 125 MTQIQARAVPPLMVG---K-DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g---~-dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
.++.|..++..++.. . .+++.||||+|||.+.+++++..+... .....+++++.|++.+..++++.++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---IKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---ccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 488999998887743 4 788999999999999999998776653 125678999999999999999999987665
Q ss_pred cCCeEEEEEcCccchHHHHH-----H---------hcCCCEEEeCchHHHHHHhcCCCCc-c--CCceEEEEeCchhhhc
Q 007743 201 HSQTVGLVIGGSARRGEAER-----I---------VKGVNLLVATPGRLLDHLQNTKGFI-Y--KNLKCLVIDEADRILE 263 (591)
Q Consensus 201 ~~~~~~~~~gg~~~~~~~~~-----l---------~~~~~Iiv~Tp~~L~~~l~~~~~~~-~--~~l~~lVlDEah~l~~ 263 (591)
.........|.......... . .....++++||-...........+. + -..+++||||+|.+.+
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 44333322232221111000 0 0113555666655544221111111 1 1237899999998876
Q ss_pred cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHH
Q 007743 264 ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSF 343 (591)
Q Consensus 264 ~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~ 343 (591)
......+..++..+...+..++++|||+|+.........+....................+.+.....-.......+...
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 53344555566666555788999999999999877766655433222211100000001111110000000000011111
Q ss_pred H--HhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhh----cCCccEEEEeCccccCCCCCC
Q 007743 344 L--KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFC----KAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 344 l--~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~----~g~~~vLvaT~~~~~GiDip~ 417 (591)
+ ....+++++|.|||+..|..++..|+..+..++.+||.+...+|.+.++... .+...|+|||++.+.|+|+ +
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-d 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-D 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-c
Confidence 1 1244789999999999999999999998888999999999999999988654 5678999999999999999 5
Q ss_pred CcEEEEcCCCCChhhhhhhccccccCCC-CcceEEEEeChhhHHHHHHH
Q 007743 418 VDWIVQYDPPDEPKEYIHRVGRTARGEG-ARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 418 v~~VI~~~~P~s~~~y~qr~GR~gR~~~-~~g~~i~~~~~~e~~~~~~l 465 (591)
.+++|-==.| +++.+||+||++|-|. ..|..+++..........+.
T Consensus 512 fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~ 558 (733)
T COG1203 512 FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYS 558 (733)
T ss_pred cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhh
Confidence 8887754344 8899999999999763 36777777665544444333
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=3.3e-22 Score=217.71 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=112.5
Q ss_pred CchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc
Q 007743 332 PSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA 409 (591)
Q Consensus 332 ~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 409 (591)
....|+..+...+.. ..+.++||||+|+..++.++.+|...++++..+|+ .+.+|...+..|..+...|+|||+++
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 345688888888854 36789999999999999999999999999999997 68899999999999999999999999
Q ss_pred ccCCCCC---CCc-----EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 410 ARGLDIP---AVD-----WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 410 ~~GiDip---~v~-----~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
+||+||+ .|. +||++..|.+...|.||+|||||.| .+|.++.|++.+|.
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG-dpGsS~ffvSleD~ 713 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG-DPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC-CCcceEEEechhHH
Confidence 9999999 554 3499999999999999999999975 78999999998774
No 111
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.89 E-value=7.5e-22 Score=215.08 Aligned_cols=317 Identities=20% Similarity=0.260 Sum_probs=218.6
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH-HhhcC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL-LKYHS 202 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~-~~~~~ 202 (591)
..+..+...+..+.+++.++++|.||+|||..----++...... .....+++.-|.|--|..+++.+..= +...+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~----~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES----GAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc----CCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 45777888888899999999999999999998444444444333 35567888889999999888766532 22234
Q ss_pred CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-hhhccccHHHHHHHHHhCCCCC
Q 007743 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD-RILEANFEEEMRQIMKLLPKKD 281 (591)
Q Consensus 203 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah-~l~~~~f~~~~~~i~~~l~~~~ 281 (591)
..|+.-++..+... ....+++||.|.|++.|...+ .+..+..+|+||+| |=.+.+|.-.+.+.+-...+ .
T Consensus 249 ~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~~--~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p-~ 319 (924)
T KOG0920|consen 249 EEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQSDP--TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP-D 319 (924)
T ss_pred CeeeEEEeeecccC------CceeEEEecHHHHHHHhccCc--ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC-C
Confidence 34444443333222 237899999999999998754 57899999999999 44445555444433333333 8
Q ss_pred ccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccc--------------cCCceeE------------EEecCchh
Q 007743 282 RQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT--------------NEGLQQG------------YCVVPSAK 335 (591)
Q Consensus 282 ~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--------------~~~l~~~------------~~~~~~~~ 335 (591)
.++++||||+.. ++.+.++...|+ +.+........ .....+. ......+-
T Consensus 320 LkvILMSAT~da---e~fs~YF~~~pv-i~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 320 LKVILMSATLDA---ELFSDYFGGCPV-ITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred ceEEEeeeecch---HHHHHHhCCCce-EeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 999999999983 344445554343 33321110000 0000000 00001112
Q ss_pred HHHHHHHHHH----hcCCCcEEEEecChhhHHHHHHHHHHc-------CCCeEeccCccCHHHHHHHHHHhhcCCccEEE
Q 007743 336 RFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELLRYI-------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILL 404 (591)
Q Consensus 336 k~~~l~~~l~----~~~~~~~iVF~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLv 404 (591)
...++..++. ....+.+|||.++..++..+.+.|... .+-+.++|+.|+..+...++.....|..+||+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 2333333332 244789999999999999999999752 25578999999999999999999999999999
Q ss_pred EeCccccCCCCCCCcEEEE--------cCCCC----------ChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 405 CTDVAARGLDIPAVDWIVQ--------YDPPD----------EPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 405 aT~~~~~GiDip~v~~VI~--------~~~P~----------s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
||++++.+|.|++|-+||+ ||+-. +.+.-.||.|||||. ..|.|+.+++....
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv--~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV--RPGICYHLYTRSRY 546 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc--cCCeeEEeechhhh
Confidence 9999999999999999997 44322 455668999999997 47999999987543
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=4.6e-21 Score=218.17 Aligned_cols=328 Identities=21% Similarity=0.248 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhc----cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQARAVP----PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q~~~i~----~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
+++.+.+.+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.... ++.+++|.+||+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-------~~~~vvi~t~t~ 302 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-------TEKPVVISTNTK 302 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-------CCCeEEEEeCcH
Confidence 455777888888986 7999997665 5668899999999999999999999987643 245799999999
Q ss_pred HHHHHHHH-HHHHHHhhcC--CeEEEEEcCccch---------------HH-----------------------------
Q 007743 185 ELAIQTHA-VAKDLLKYHS--QTVGLVIGGSARR---------------GE----------------------------- 217 (591)
Q Consensus 185 eLa~q~~~-~~~~~~~~~~--~~~~~~~gg~~~~---------------~~----------------------------- 217 (591)
+|..|+.. .+..+.+..+ +++.++.|+.+.- .+
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 5666655544 5666666654310 00
Q ss_pred ---HHH------------------------HhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc-----
Q 007743 218 ---AER------------------------IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN----- 265 (591)
Q Consensus 218 ---~~~------------------------l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~----- 265 (591)
+.. ....++|||+...-|+..+..... .+....+|||||||+|.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHhc
Confidence 000 011268999999988887754432 34556899999999986410
Q ss_pred --c-----HHHHH-------------------------------------------------------------H---HH
Q 007743 266 --F-----EEEMR-------------------------------------------------------------Q---IM 274 (591)
Q Consensus 266 --f-----~~~~~-------------------------------------------------------------~---i~ 274 (591)
+ ...+. . .+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 00000 0 00
Q ss_pred Hh-----------C----------C--------------------------CCCccEEEEeccCchh--HHHHHH-hhCC
Q 007743 275 KL-----------L----------P--------------------------KKDRQTALFSATQTKK--VEDLAR-LSFQ 304 (591)
Q Consensus 275 ~~-----------l----------~--------------------------~~~~q~ll~SAT~~~~--~~~l~~-~~~~ 304 (591)
.. + . .....++++|||++.. ...+.+ +++.
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0 0124678999999742 333332 2222
Q ss_pred CCCeEEEecCCCcccccCCceeEEEe--cC------chhHHHH----HHHHHHhcCCCcEEEEecChhhHHHHHHHHHH-
Q 007743 305 TTPVYIDVDDGRTKVTNEGLQQGYCV--VP------SAKRFIL----LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRY- 371 (591)
Q Consensus 305 ~~~~~i~~~~~~~~~~~~~l~~~~~~--~~------~~~k~~~----l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~- 371 (591)
. .....+.+ .......-...++. .+ ...-... +..++. ...+++||||+|....+.++..|..
T Consensus 622 ~-~~~~~~~~--spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~ 697 (850)
T TIGR01407 622 D-VHFNTIEP--TPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNEL 697 (850)
T ss_pred c-cccceecC--CCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhh
Confidence 1 22222211 00010000111211 11 1111112 223333 3467999999999999999999975
Q ss_pred ---cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc--EEEEcCCCC----C-------------
Q 007743 372 ---IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD--WIVQYDPPD----E------------- 429 (591)
Q Consensus 372 ---~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~--~VI~~~~P~----s------------- 429 (591)
.++.+ +..+.. ..|..+++.|++++..||+||+.+++|||+|+.. +||...+|. +
T Consensus 698 ~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~ 774 (850)
T TIGR01407 698 PEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQE 774 (850)
T ss_pred ccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 23333 333333 5789999999999999999999999999999876 466666553 1
Q ss_pred -------------hhhhhhhccccccCCCCcceEEE
Q 007743 430 -------------PKEYIHRVGRTARGEGARGNALL 452 (591)
Q Consensus 430 -------------~~~y~qr~GR~gR~~~~~g~~i~ 452 (591)
...+.|.+||.-|.....|..++
T Consensus 775 g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~i 810 (850)
T TIGR01407 775 GKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVI 810 (850)
T ss_pred cCCchHHhhHHHHHHHHHHhhccccccCCceEEEEE
Confidence 12346899999996545554333
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=2.9e-21 Score=210.61 Aligned_cols=130 Identities=17% Similarity=0.255 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcccc
Q 007743 334 AKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAAR 411 (591)
Q Consensus 334 ~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 411 (591)
..++..|...+.. ..+.++||||+|+..++.+++.|...++.+..+||++++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3455566666654 34678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcC-----CCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 412 GLDIPAVDWIVQYD-----PPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 412 GiDip~v~~VI~~~-----~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|+...+....+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~--~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC--CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999988 799999999999999995 47999999988665555444
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=1.4e-19 Score=199.16 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccC
Q 007743 335 KRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARG 412 (591)
Q Consensus 335 ~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 412 (591)
.++..+...|.. ..+.++||||+|+..++.++..|...++++..+||++++.+|..++..|+.|...|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 344555555544 346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCC-----CCChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 413 LDIPAVDWIVQYDP-----PDEPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 413 iDip~v~~VI~~~~-----P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
+|+|++++||++|. |.+..+|+||+|||||. ..|.+++|+..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~--~~G~~i~~~~~ 556 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVILYADK 556 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC--CCCEEEEEecC
Confidence 99999999999874 78999999999999994 57999999985
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=2.7e-18 Score=182.51 Aligned_cols=320 Identities=19% Similarity=0.203 Sum_probs=217.2
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|+ .|+++|.-+.-.++.|+ |+.+.||+|||++..+|+....+ .|..|.|++|+--||.|-++++..+..
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL-------~G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL-------QGRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH-------cCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 455 68999999988888885 88999999999999999876654 477899999999999999999999999
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh-cc--------
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL-EA-------- 264 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~~-------- 264 (591)
++++.++++.++.+.... +... .+||+++|..-| +++|+..- ....+.+.+.|+||+|.++ |.
T Consensus 145 ~LGLsvg~i~~~~~~~er-r~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 145 ALGLTVGWITEESTPEER-RAAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred hcCCEEEEECCCCCHHHH-HHHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 999999999887664432 3322 489999999875 34443321 1234678899999999765 20
Q ss_pred ------ccHHHHHHHHHhCCCC-------C--------------------------------------------------
Q 007743 265 ------NFEEEMRQIMKLLPKK-------D-------------------------------------------------- 281 (591)
Q Consensus 265 ------~f~~~~~~i~~~l~~~-------~-------------------------------------------------- 281 (591)
.....+..+...+... .
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 1112223333333210 0
Q ss_pred ------------------------------------------------------------ccEEEEeccCchhHHHHHHh
Q 007743 282 ------------------------------------------------------------RQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 282 ------------------------------------------------------------~q~ll~SAT~~~~~~~l~~~ 301 (591)
..+.++|+|......++.+.
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 12233333333333333322
Q ss_pred hCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEec
Q 007743 302 SFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI 379 (591)
Q Consensus 302 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~l 379 (591)
+-. + ++.+........ ... ...+......|+..+..-+.. ..+.|+||.+.|....+.++.+|...+++...|
T Consensus 383 Y~l--~-Vv~IPtnkp~~R-~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 383 YDL--G-VSVIPPNKPNIR-EDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred hCC--c-EEECCCCCCcee-ecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 211 1 111111110000 000 012223345566666665543 458899999999999999999999999999999
Q ss_pred cCccCHHHHHHHHHHhhcCC-ccEEEEeCccccCCCCCC---------------CcEEEEcCCCCChhhhhhhccccccC
Q 007743 380 HGKQKQQKRTTTFFDFCKAE-KGILLCTDVAARGLDIPA---------------VDWIVQYDPPDEPKEYIHRVGRTARG 443 (591)
Q Consensus 380 h~~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~~GiDip~---------------v~~VI~~~~P~s~~~y~qr~GR~gR~ 443 (591)
++.-...+ ..++. ..|+ -.|-|||++++||-||.- ==+||....|.|..---|-.||+||.
T Consensus 458 NAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 98744333 22222 2344 469999999999999862 23799999999999999999999997
Q ss_pred CCCcceEEEEeChhhHH
Q 007743 444 EGARGNALLFLIPEELQ 460 (591)
Q Consensus 444 ~~~~g~~i~~~~~~e~~ 460 (591)
| .+|.+..|++-+|.-
T Consensus 535 G-DpGss~f~lSleDdl 550 (764)
T PRK12326 535 G-DPGSSVFFVSLEDDV 550 (764)
T ss_pred C-CCCceeEEEEcchhH
Confidence 5 789999999877643
No 116
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=2e-19 Score=178.39 Aligned_cols=326 Identities=18% Similarity=0.243 Sum_probs=223.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
.+.|...+.+++..+.|++..-...+..+.+-+..+.+++-+++.|.||||||.. +|-...-+... ....+...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~----~~~~v~CT 97 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELS----HLTGVACT 97 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHh----hccceeec
Confidence 5679999999999999988766667777788888888999999999999999987 44332222211 12446777
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch-
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD- 259 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah- 259 (591)
-|.|..|+++.. +.+..+....+.-+|..-..++... ...-+-+||.|+|++...+.+ .+..+++||+||||
T Consensus 98 Qprrvaamsva~---RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p--~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 98 QPRRVAAMSVAQ---RVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDP--LLGRYGVIILDEAHE 170 (699)
T ss_pred CchHHHHHHHHH---HHHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCc--ccccccEEEechhhh
Confidence 799999998654 4455556555555554333222100 001123789999888777665 56899999999999
Q ss_pred hhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHH
Q 007743 260 RILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFI 338 (591)
Q Consensus 260 ~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~ 338 (591)
|-+. .-....+..++...| ...++++|||+... . .+.++.+.|. +.+.. ...+..+|...+..+.+.
T Consensus 171 RtlATDiLmGllk~v~~~rp--dLk~vvmSatl~a~--K-fq~yf~n~Pl-l~vpg------~~PvEi~Yt~e~erDylE 238 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRP--DLKLVVMSATLDAE--K-FQRYFGNAPL-LAVPG------THPVEIFYTPEPERDYLE 238 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCC--CceEEEeecccchH--H-HHHHhCCCCe-eecCC------CCceEEEecCCCChhHHH
Confidence 3332 122234555555554 78999999998643 2 3345665444 44432 122334565555555444
Q ss_pred ----HHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc---------CCCeEeccCccCHHHHHHHHHHhhc---C--Cc
Q 007743 339 ----LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI---------QVDCFDIHGKQKQQKRTTTFFDFCK---A--EK 400 (591)
Q Consensus 339 ----~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~R~~~~~~F~~---g--~~ 400 (591)
.++++......+.++||..+.++++..++.+... .+.|+++| +.+..++++--.. | ..
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 3444445566899999999999998888877632 35688888 3333444432221 2 35
Q ss_pred cEEEEeCccccCCCCCCCcEEEEcCC------------------CCChhhhhhhccccccCCCCcceEEEEeChh
Q 007743 401 GILLCTDVAARGLDIPAVDWIVQYDP------------------PDEPKEYIHRVGRTARGEGARGNALLFLIPE 457 (591)
Q Consensus 401 ~vLvaT~~~~~GiDip~v~~VI~~~~------------------P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~ 457 (591)
+|+|+|++++..+.+++|.+||.-++ |.|..+-.||.||+||. ++|+|+.+|+.+
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt--~pGkcfrLYte~ 387 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEE 387 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC--CCCceEEeecHH
Confidence 79999999999999999999997443 66888999999999995 589999999864
No 117
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=2.5e-19 Score=180.65 Aligned_cols=282 Identities=19% Similarity=0.165 Sum_probs=190.3
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 218 (591)
.+-++-+|||.||||.- +|+++... ...++..|.|-||.++++.++.. ++.+.+++|.......-
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~a-------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSA-------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD 255 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhh-------ccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC
Confidence 34577889999999966 66777542 34689999999999999998876 55566666644332221
Q ss_pred HHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHH
Q 007743 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDL 298 (591)
Q Consensus 219 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l 298 (591)
. .+.++.+-||-++.. .-..+++.||||++.|.+...+..|.+.+--+........+ .+.+-++
T Consensus 256 ~--~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldl 319 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDL 319 (700)
T ss_pred C--CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHH
Confidence 1 122577888877651 12457899999999999876666776655444432444332 2333444
Q ss_pred HHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCC-eE
Q 007743 299 ARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVD-CF 377 (591)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~ 377 (591)
.+..+...-..+.+.. |.......-...+..-+.....+.|||-+ |++.+..+...+...+.. ++
T Consensus 320 V~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcCcceE
Confidence 4433322222222211 11111111111233344444567777655 577888888888887765 99
Q ss_pred eccCccCHHHHHHHHHHhhc--CCccEEEEeCccccCCCCCCCcEEEEcCCC---------CChhhhhhhccccccCCC-
Q 007743 378 DIHGKQKQQKRTTTFFDFCK--AEKGILLCTDVAARGLDIPAVDWIVQYDPP---------DEPKEYIHRVGRTARGEG- 445 (591)
Q Consensus 378 ~lh~~~~~~~R~~~~~~F~~--g~~~vLvaT~~~~~GiDip~v~~VI~~~~P---------~s~~~y~qr~GR~gR~~~- 445 (591)
+++|++|++.|......|++ +..+||||||+.+||+|+ +++.||.|++- .+..+..|.+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999998 889999999999999999 89999998863 467888999999999754
Q ss_pred -CcceEEEEeChhhHHHHHHHHH
Q 007743 446 -ARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 446 -~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
..|.+..|. .+|...++.+.+
T Consensus 465 ~~~G~vTtl~-~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 465 YPQGEVTTLH-SEDLKLLKRILK 486 (700)
T ss_pred CcCceEEEee-HhhHHHHHHHHh
Confidence 235555553 467777776654
No 118
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=5.8e-19 Score=183.87 Aligned_cols=320 Identities=18% Similarity=0.234 Sum_probs=211.9
Q ss_pred CCcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.|+++|-+.+.++. +|-++|+...+|-|||+..+ ..+..|.... ..+|+ -||++|...|... .+.+++++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~--~~~GP-fLVi~P~StL~NW-~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRK--GIPGP-FLVIAPKSTLDNW-MNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhc--CCCCC-eEEEeeHhhHHHH-HHHHHHhCC
Confidence 68999999998876 67789999999999998853 3333333211 12344 6999999888553 444554432
Q ss_pred hcCCeEEEEEcCccchHHHHH-H--hcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHh
Q 007743 200 YHSQTVGLVIGGSARRGEAER-I--VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~-l--~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~ 276 (591)
++.+.+++|.........+ + ....+|+|+|++..+.-- ..+.--.++|+|||||||+-+.. ..+..+++.
T Consensus 242 --~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~ 314 (971)
T KOG0385|consen 242 --SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILRE 314 (971)
T ss_pred --CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchh--hHHHHHHHH
Confidence 4567777776644333222 1 235799999999885431 11223457999999999997643 455667776
Q ss_pred CCCCCccEEEEeccCch-hHHHHHH----------------------------------------------------hhC
Q 007743 277 LPKKDRQTALFSATQTK-KVEDLAR----------------------------------------------------LSF 303 (591)
Q Consensus 277 l~~~~~q~ll~SAT~~~-~~~~l~~----------------------------------------------------~~~ 303 (591)
+.. .-.+|+|+|.-. ++.+|-. ..+
T Consensus 315 f~~--~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 315 FKT--DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred hcc--cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 653 345667777221 1111000 000
Q ss_pred CCCC-eEEEecCC-------------C---ccccc----C-----------CceeEE---------------EecCchhH
Q 007743 304 QTTP-VYIDVDDG-------------R---TKVTN----E-----------GLQQGY---------------CVVPSAKR 336 (591)
Q Consensus 304 ~~~~-~~i~~~~~-------------~---~~~~~----~-----------~l~~~~---------------~~~~~~~k 336 (591)
.... ..+.+.-. . ..... . ...+-| ..+....|
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGK 472 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGK 472 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcc
Confidence 0000 00000000 0 00000 0 000011 11123456
Q ss_pred HHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC---ccEEEEeCcccc
Q 007743 337 FILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE---KGILLCTDVAAR 411 (591)
Q Consensus 337 ~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~---~~vLvaT~~~~~ 411 (591)
+.+|-.+|.. ..+.++|||..-....+.+..++...++..+.+.|.++.++|...++.|+... .-+|++|.+.+-
T Consensus 473 m~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 473 MLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred eehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 7777777764 35789999998888888888888888999999999999999999999999744 557889999999
Q ss_pred CCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCc-ceEEEEeChh
Q 007743 412 GLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGAR-GNALLFLIPE 457 (591)
Q Consensus 412 GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~-g~~i~~~~~~ 457 (591)
|||+..+++||.||.-++|..-.|..-||.|.|..+ -.++-|++.+
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999998543 4455566654
No 119
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=5.6e-19 Score=166.83 Aligned_cols=187 Identities=41% Similarity=0.634 Sum_probs=151.2
Q ss_pred HCCCCCCcHHHHHhhccccCC-CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVG-KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..++..++++|.++++.++.+ +.+++.++||+|||.+++.+++..+... ....++|++|++.++.|+...+..+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-----~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-----KGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-----CCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 456788999999999999998 9999999999999999999988876542 2457999999999999999998887
Q ss_pred HhhcCCeEEEEEcCccchHHHHHHhcCC-CEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHh
Q 007743 198 LKYHSQTVGLVIGGSARRGEAERIVKGV-NLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276 (591)
Q Consensus 198 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~ 276 (591)
............++.........+..+. +++++|++.+.+.+.... .....++++|+||||.+....+...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 6654434555566655555556666666 999999999999887755 45678899999999999876778888888888
Q ss_pred CCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEec
Q 007743 277 LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVD 313 (591)
Q Consensus 277 l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~ 313 (591)
++. ..+++++|||++.........++. ....+...
T Consensus 157 ~~~-~~~~v~~saT~~~~~~~~~~~~~~-~~~~~~~~ 191 (201)
T smart00487 157 LPK-NVQLLLLSATPPEEIENLLELFLN-DPVFIDVG 191 (201)
T ss_pred CCc-cceEEEEecCCchhHHHHHHHhcC-CCEEEeCC
Confidence 855 789999999999888888877665 35555443
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.4e-18 Score=186.07 Aligned_cols=321 Identities=18% Similarity=0.201 Sum_probs=206.1
Q ss_pred CCCcHHHHHhhccccCC----CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLMVG----KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g----~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
..+++-|+.++..+... .-.++.+.||||||-+|+-.+-+.|. .|..+|||+|-..|-.|+.+.++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-------~GkqvLvLVPEI~Ltpq~~~rf~~r- 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-------QGKQVLVLVPEIALTPQLLARFKAR- 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-------cCCEEEEEeccccchHHHHHHHHHH-
Confidence 35788999999988765 57899999999999999766655553 4788999999999999988777754
Q ss_pred hhcCCeEEEEEcCccch---HHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc---ccc---HH
Q 007743 199 KYHSQTVGLVIGGSARR---GEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANF---EE 268 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~---~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~---~~f---~~ 268 (591)
++..+..++++.+.. ..+.+.. ....|||+|--.++ ..++++++||+||=|.-.- .+. ..
T Consensus 269 --Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--------~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 --FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred --hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--------CchhhccEEEEeccccccccCCcCCCcCHH
Confidence 346777777776554 3444444 45899999966553 3478999999999995432 122 23
Q ss_pred HHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhH----HHHHHHHH
Q 007743 269 EMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKR----FILLYSFL 344 (591)
Q Consensus 269 ~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k----~~~l~~~l 344 (591)
++........ +.++++-|||.+-+....+.. .....+.+...........+.-.......... -..|++.+
T Consensus 339 dvA~~Ra~~~--~~pvvLgSATPSLES~~~~~~---g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 339 DVAVLRAKKE--NAPVVLGSATPSLESYANAES---GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred HHHHHHHHHh--CCCEEEecCCCCHHHHHhhhc---CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 3333333333 689999999977554444422 11233333221111111111111110000011 12344444
Q ss_pred Hh--cCCCcEEEEecChhhH------------------------------------------------------------
Q 007743 345 KR--NLSKKVMVFFSSCNSV------------------------------------------------------------ 362 (591)
Q Consensus 345 ~~--~~~~~~iVF~~s~~~~------------------------------------------------------------ 362 (591)
+. ..+.++|+|+|.+--+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 43 2366788886543211
Q ss_pred HHHHHHHHHc--CCCeEeccCccCHH--HHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCC-----------
Q 007743 363 KFHSELLRYI--QVDCFDIHGKQKQQ--KRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP----------- 427 (591)
Q Consensus 363 ~~l~~~L~~~--~~~~~~lh~~~~~~--~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P----------- 427 (591)
+++.+.|... +.+++.+.++.... .-...+..|.+|+.+|||.|.+++.|.|+|+|++|...|.-
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 2222333222 34566666666543 35677899999999999999999999999999998654432
Q ss_pred -CChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 428 -DEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 428 -~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
.....+.|-+|||||++ .+|.+++-...-+...++.+..
T Consensus 574 Er~fqll~QvaGRAgR~~-~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAG-KPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHHHHHhhhccCC-CCCeEEEEeCCCCcHHHHHHHh
Confidence 13556789999999964 6799988887777666666644
No 121
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.83 E-value=5.6e-18 Score=173.18 Aligned_cols=295 Identities=19% Similarity=0.235 Sum_probs=219.0
Q ss_pred CCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc-CC--------eEE----------EEEcCccchHHHHHHhcC------
Q 007743 170 APRNGTGVIVICPTRELAIQTHAVAKDLLKYH-SQ--------TVG----------LVIGGSARRGEAERIVKG------ 224 (591)
Q Consensus 170 ~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~--------~~~----------~~~gg~~~~~~~~~l~~~------ 224 (591)
+....++||||+|+|..|..+.+.+..++... .. ..+ .-......+.++..++.|
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~F 112 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCF 112 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceE
Confidence 34567899999999999999999888776431 00 000 000112344455555543
Q ss_pred -------------------CCEEEeCchHHHHHHhcC----C-CCccCCceEEEEeCchhhhccccHHHHHHHHHhC---
Q 007743 225 -------------------VNLLVATPGRLLDHLQNT----K-GFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL--- 277 (591)
Q Consensus 225 -------------------~~Iiv~Tp~~L~~~l~~~----~-~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l--- 277 (591)
+|||||+|-.|...+... . .-.|+++.++|+|.||.|+.++|. .+..++.++
T Consensus 113 rlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~ 191 (442)
T PF06862_consen 113 RLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQ 191 (442)
T ss_pred EEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccC
Confidence 799999999998888741 1 123899999999999998887654 445555444
Q ss_pred CC--------------------CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCc-----ccccCCceeEEEecC
Q 007743 278 PK--------------------KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRT-----KVTNEGLQQGYCVVP 332 (591)
Q Consensus 278 ~~--------------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~~~~~~ 332 (591)
|+ .-+|++++|+..++++..+....+.+....+.+..... ......+.|.+...+
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEec
Confidence 32 13899999999999999999887766555554433222 234456777777644
Q ss_pred c-------hhHHHHHHH----HHH-hcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCc
Q 007743 333 S-------AKRFILLYS----FLK-RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400 (591)
Q Consensus 333 ~-------~~k~~~l~~----~l~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~ 400 (591)
. +.++..... -+. ....+++|||++|.-+--++.++|+..++.++.+|...++.+-.++...|..|+.
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 2 334443322 222 4456899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCccc--cCCCCCCCcEEEEcCCCCChhhhhhhccccccCC-----CCcceEEEEeChhhHHHHHHH
Q 007743 401 GILLCTDVAA--RGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGE-----GARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 401 ~vLvaT~~~~--~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~-----~~~g~~i~~~~~~e~~~~~~l 465 (591)
.||+.|.-+. +-..|.+|++||.|++|..+.-|...+.-.+... .....|.++++.-|...|..+
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999876 7788999999999999999999987775555422 135799999999888777666
No 122
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=4.7e-18 Score=190.90 Aligned_cols=312 Identities=22% Similarity=0.239 Sum_probs=193.6
Q ss_pred CCCCCCcHHHHHhhcc----ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH-HHHH
Q 007743 120 MGFQFMTQIQARAVPP----LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT-HAVA 194 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~----il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~-~~~~ 194 (591)
.|| .+++-|.+.... +..++.+++.|+||+|||++|++|++... .+.++||++||++|+.|+ .+.+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 455 589999884443 44678899999999999999999988652 357899999999999999 5778
Q ss_pred HHHHhhcCCeEEEEEcCccchHH-----------------------------------------------HHHH------
Q 007743 195 KDLLKYHSQTVGLVIGGSARRGE-----------------------------------------------AERI------ 221 (591)
Q Consensus 195 ~~~~~~~~~~~~~~~gg~~~~~~-----------------------------------------------~~~l------ 221 (591)
..+.+.++..+.++.|+.+.-.. +..+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~ 392 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNL 392 (820)
T ss_pred HHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCC
Confidence 88888888888777776542100 0000
Q ss_pred ------------------hcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc-----c-------HHHH-
Q 007743 222 ------------------VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-----F-------EEEM- 270 (591)
Q Consensus 222 ------------------~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~-----f-------~~~~- 270 (591)
...++|||+....|+..+.... .+...+++||||||++.+.. . ...+
T Consensus 393 ~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 393 SQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 0016899999998888775543 24678999999999876511 0 0000
Q ss_pred ------------------------------------------HH-------H--------HHhC---C------------
Q 007743 271 ------------------------------------------RQ-------I--------MKLL---P------------ 278 (591)
Q Consensus 271 ------------------------------------------~~-------i--------~~~l---~------------ 278 (591)
.. + ...+ .
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 00 0 0000 0
Q ss_pred --------------------CCCccEEEEeccCc--hhHHHHHH-hhCCCCCeEEEecCCCcccccCCceeEEEe--cC-
Q 007743 279 --------------------KKDRQTALFSATQT--KKVEDLAR-LSFQTTPVYIDVDDGRTKVTNEGLQQGYCV--VP- 332 (591)
Q Consensus 279 --------------------~~~~q~ll~SAT~~--~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~--~~- 332 (591)
.....++++|||++ +... +.+ .++. ......+.. ....-...+.. .+
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~-~~~~~~~~~-----~~~~~~~~~i~~~~p~ 623 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFE-EYLFHKIEK-----DKKQDQLVVVDQDMPL 623 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCC-ccceecCCC-----ChHHccEEEeCCCCCC
Confidence 00235788899986 3222 332 2221 111111110 00000111111 11
Q ss_pred -----chhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEE
Q 007743 333 -----SAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLC 405 (591)
Q Consensus 333 -----~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLva 405 (591)
...-...+...+.. ..+++++|+++|.+..+.++..|......+ ...|... .|..++++|+++...||++
T Consensus 624 ~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 624 VTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEe
Confidence 11111122222211 357899999999999999999997655554 3333221 3566899999998899999
Q ss_pred eCccccCCCCCC--CcEEEEcCCCC----C--------------------------hhhhhhhccccccCCCCcceEEE
Q 007743 406 TDVAARGLDIPA--VDWIVQYDPPD----E--------------------------PKEYIHRVGRTARGEGARGNALL 452 (591)
Q Consensus 406 T~~~~~GiDip~--v~~VI~~~~P~----s--------------------------~~~y~qr~GR~gR~~~~~g~~i~ 452 (591)
|..+..|||+|+ ...||...+|- + .-.+.|-+||.-|.....|.+++
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999974 45566655552 2 22346999999996545565433
No 123
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=2.7e-18 Score=179.80 Aligned_cols=337 Identities=16% Similarity=0.230 Sum_probs=217.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 107 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 107 l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
+.++..|.. .+.++|+..+.++. ++.--|+...+|-|||..-+. .|..|+... .-...+|||||
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~---k~~~paLIVCP 263 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSG---KLTKPALIVCP 263 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcc---cccCceEEEcc
Confidence 456665544 46899999999876 456689999999999987432 333333321 12256999999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc--------hHHHHH-----HhcCCCEEEeCchHHHHHHhcCCCCccCC
Q 007743 183 TRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR--------RGEAER-----IVKGVNLLVATPGRLLDHLQNTKGFIYKN 249 (591)
Q Consensus 183 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~--------~~~~~~-----l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~ 249 (591)
. .++.||.+.+..+ +..+.|.+++|.... ...... ...+..|+|+|+..+.-+ ... +.-..
T Consensus 264 ~-Tii~qW~~E~~~w--~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~-l~~~~ 337 (923)
T KOG0387|consen 264 A-TIIHQWMKEFQTW--WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDD-LLGIL 337 (923)
T ss_pred H-HHHHHHHHHHHHh--CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--Ccc-ccccc
Confidence 6 4566777777766 334567666664442 011111 112457999999877422 211 33456
Q ss_pred ceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc-hhHHHHHHhh--------------------------
Q 007743 250 LKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT-KKVEDLARLS-------------------------- 302 (591)
Q Consensus 250 l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~-~~~~~l~~~~-------------------------- 302 (591)
++|+|+||.|++-+.+ ..+...+..++ ..+.+++|+|.- +.+.+|..++
T Consensus 338 W~y~ILDEGH~IrNpn--s~islackki~--T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Gg 413 (923)
T KOG0387|consen 338 WDYVILDEGHRIRNPN--SKISLACKKIR--TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGG 413 (923)
T ss_pred ccEEEecCcccccCCc--cHHHHHHHhcc--ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccc
Confidence 8999999999987644 35555556665 355666777722 1111111110
Q ss_pred ---------------------------------------CCC-CCeEEEec----------------------CCCcc--
Q 007743 303 ---------------------------------------FQT-TPVYIDVD----------------------DGRTK-- 318 (591)
Q Consensus 303 ---------------------------------------~~~-~~~~i~~~----------------------~~~~~-- 318 (591)
+.. .-.++... .+..+
T Consensus 414 yaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l 493 (923)
T KOG0387|consen 414 YANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCL 493 (923)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccce
Confidence 000 00000000 00000
Q ss_pred ----------cccCCcee---------EE-EecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHH-HcCCC
Q 007743 319 ----------VTNEGLQQ---------GY-CVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLR-YIQVD 375 (591)
Q Consensus 319 ----------~~~~~l~~---------~~-~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~-~~~~~ 375 (591)
..+..+.. .| -......|+..+..++.. ..+.++|+|..++.....+..+|. ..++.
T Consensus 494 ~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ys 573 (923)
T KOG0387|consen 494 SGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYS 573 (923)
T ss_pred echHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCce
Confidence 00000000 00 111123467777777764 346799999999999999999999 68999
Q ss_pred eEeccCccCHHHHHHHHHHhhcCCc--cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEE-
Q 007743 376 CFDIHGKQKQQKRTTTFFDFCKAEK--GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL- 452 (591)
Q Consensus 376 ~~~lh~~~~~~~R~~~~~~F~~g~~--~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~- 452 (591)
++.+.|..+...|..+++.|+++.. -+|++|.|.+-|+|+.+++-||.||+-|+|++-.|..-||-|.|..+++++.
T Consensus 574 ylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYR 653 (923)
T KOG0387|consen 574 YLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYR 653 (923)
T ss_pred EEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEE
Confidence 9999999999999999999998764 4788999999999999999999999999999999999999999866655543
Q ss_pred EeCh---hhHHHHHHH
Q 007743 453 FLIP---EELQFLRYL 465 (591)
Q Consensus 453 ~~~~---~e~~~~~~l 465 (591)
|++. +|.-|.+++
T Consensus 654 L~t~gTIEEkiY~rQI 669 (923)
T KOG0387|consen 654 LMTAGTIEEKIYHRQI 669 (923)
T ss_pred EecCCcHHHHHHHHHH
Confidence 4443 455555544
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3.9e-18 Score=185.62 Aligned_cols=319 Identities=19% Similarity=0.269 Sum_probs=210.7
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|. .++++|--.--.+..|+ |+.+.||+|||+++.+|++...+ .|..|.|++|+--||.|-++++..+..
T Consensus 79 lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al-------~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNAL-------SGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred hCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 453 57888876655565664 89999999999999999875543 477899999999999999999999999
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCCCC-----ccCCceEEEEeCchhhh-cc--------
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTKGF-----IYKNLKCLVIDEADRIL-EA-------- 264 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~-----~~~~l~~lVlDEah~l~-~~-------- 264 (591)
++++.++++.++.+........ .++|+++|..-| +++|+..-.+ ..+.+.++||||+|.++ |.
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 9999999988876554433222 289999999886 5555544211 24788999999999865 20
Q ss_pred -------ccHHHHHHHHHhCCC-------------------CCc------------------------------------
Q 007743 265 -------NFEEEMRQIMKLLPK-------------------KDR------------------------------------ 282 (591)
Q Consensus 265 -------~f~~~~~~i~~~l~~-------------------~~~------------------------------------ 282 (591)
.....+..+...+.. ..+
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 011122222222210 011
Q ss_pred -------------------------------------------------------------------------------c
Q 007743 283 -------------------------------------------------------------------------------Q 283 (591)
Q Consensus 283 -------------------------------------------------------------------------------q 283 (591)
.
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 1
Q ss_pred EEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhh
Q 007743 284 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNS 361 (591)
Q Consensus 284 ~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~ 361 (591)
+.+||+|......+|...+-.. ++.+..... ...... ...+......|+..+..-+.. ..+.|+||-+.|...
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~---Vv~IPTnkP-~~R~D~-~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLD---VVVIPPNKP-LARKDF-NDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCC---EEECCCCCC-cccccC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 1112222221111111111000 011110000 000000 112233445677777666653 458899999999999
Q ss_pred HHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC-ccEEEEeCccccCCCCC------------------------
Q 007743 362 VKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE-KGILLCTDVAARGLDIP------------------------ 416 (591)
Q Consensus 362 ~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~~GiDip------------------------ 416 (591)
.+.++.+|...+++.-++++.-...+-.-+- ..|+ ..|-|||++|+||-||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999999999999988888875433322222 3454 56999999999999994
Q ss_pred -------------CCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 417 -------------AVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 417 -------------~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
+==+||-...|.|..-=-|-.||+||.| .+|.+..|++-+|.
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSlED~ 593 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcH
Confidence 1237888889999999999999999975 68999999987653
No 125
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=184.57 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=114.6
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|..||.+.+...-.+..++++|||.+|||.+--. +++..++. .....+|+++||++|+.|+...+.........
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE----SDSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh----cCCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 47899999999999999999999999999987444 44555553 24556899999999999987776654422222
Q ss_pred -eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC--CCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCC
Q 007743 204 -TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT--KGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280 (591)
Q Consensus 204 -~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~--~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~ 280 (591)
....+.|.....-... .-.|+|+|+-|+-+-.+|-.. ......+++++|+||+|.+-...-.-.+.+++..+
T Consensus 586 ~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--- 660 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--- 660 (1330)
T ss_pred ccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc---
Confidence 2222333322221111 125899999999998777663 22346889999999999988755445666676666
Q ss_pred CccEEEEeccCchh
Q 007743 281 DRQTALFSATQTKK 294 (591)
Q Consensus 281 ~~q~ll~SAT~~~~ 294 (591)
.+.++.+|||+.+.
T Consensus 661 ~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNP 674 (1330)
T ss_pred CCCeeEEecccCCH
Confidence 46899999997764
No 126
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=2.4e-18 Score=172.54 Aligned_cols=342 Identities=20% Similarity=0.237 Sum_probs=240.1
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccC-CCCc--hHHhHHHHHHHHHhcc------------------------cCCCCCc
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAART-GSGK--TLAFLIPAVELLYNAQ------------------------FAPRNGT 175 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~T-GsGK--Tl~~~lp~l~~l~~~~------------------------~~~~~~~ 175 (591)
..+|+.|.+.+-.+.+.+|++..-.| +.|+ +-.|++.+|+++++.+ .+....+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 56899999999999999999865333 4555 6789999999987532 1123458
Q ss_pred EEEEEcCChHHHHHHHHHHHHHHhhcCCe---------EEEEEcC--------ccchHHHHHHhc---------------
Q 007743 176 GVIVICPTRELAIQTHAVAKDLLKYHSQT---------VGLVIGG--------SARRGEAERIVK--------------- 223 (591)
Q Consensus 176 ~~lil~PtreLa~q~~~~~~~~~~~~~~~---------~~~~~gg--------~~~~~~~~~l~~--------------- 223 (591)
+||||||+|+-|..+.+.+..++...... ..--++| ...+...+.++.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 89999999999999999998885443221 0001111 112223333332
Q ss_pred ----------CCCEEEeCchHHHHHHhcCC----CC-ccCCceEEEEeCchhhhccccHHHHHHHHHhCCC---C-----
Q 007743 224 ----------GVNLLVATPGRLLDHLQNTK----GF-IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK---K----- 280 (591)
Q Consensus 224 ----------~~~Iiv~Tp~~L~~~l~~~~----~~-~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~---~----- 280 (591)
..|||||+|-.|...+.+.. .+ .++++.++|||.||-|+..+|. .+..|+.++.. .
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 37999999999988886332 12 3788999999999999987765 55666665532 1
Q ss_pred ---------------CccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCC----cccccCCceeEEEec-------Cch
Q 007743 281 ---------------DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGR----TKVTNEGLQQGYCVV-------PSA 334 (591)
Q Consensus 281 ---------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~----~~~~~~~l~~~~~~~-------~~~ 334 (591)
.+|+++||+-..+....+....+.+-...+....-. .......+.|.+... ..+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 379999999999888888776665433333322111 111111122222211 124
Q ss_pred hHHHHHHHHHHh----cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccc
Q 007743 335 KRFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA 410 (591)
Q Consensus 335 ~k~~~l~~~l~~----~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 410 (591)
.++.+...-|.- .....+|||+++.-..-++.++++...+.+..+|...+...-.++...|..|...||+.|..+.
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 455554443322 2245689999999999999999999999999999999999999999999999999999999876
Q ss_pred --cCCCCCCCcEEEEcCCCCChhhh---hhhccccccCC---CCcceEEEEeChhhHHHHHHH
Q 007743 411 --RGLDIPAVDWIVQYDPPDEPKEY---IHRVGRTARGE---GARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 411 --~GiDip~v~~VI~~~~P~s~~~y---~qr~GR~gR~~---~~~g~~i~~~~~~e~~~~~~l 465 (591)
|..+|.+|+.||.|.+|.+|..| +.+.+|+.-.| +..-.|.++|+.-|.-.+..+
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 78999999999999999999877 56667765432 344678888888776544433
No 127
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=7e-18 Score=186.41 Aligned_cols=302 Identities=19% Similarity=0.189 Sum_probs=177.6
Q ss_pred CcHHHHHhhcccc----C------CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 125 MTQIQARAVPPLM----V------GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 125 ~~~~Q~~~i~~il----~------g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
+++.|..++..+. . .+..++.++||||||++.+..+...+ .. ....++|||+|+++|..|+.+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~----~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL----LKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh----cCCCeEEEEECcHHHHHHHHHHH
Confidence 7888988887653 2 25789999999999998765543333 21 24678999999999999999998
Q ss_pred HHHHhhcCCeEEEEEcCccchHHHHHHhc-CCCEEEeCchHHHHHHhcC-CCCccCCc-eEEEEeCchhhhccccHHHHH
Q 007743 195 KDLLKYHSQTVGLVIGGSARRGEAERIVK-GVNLLVATPGRLLDHLQNT-KGFIYKNL-KCLVIDEADRILEANFEEEMR 271 (591)
Q Consensus 195 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~-~~~~~~~l-~~lVlDEah~l~~~~f~~~~~ 271 (591)
..+..... .+..+.......+.. ...|+|+|...|...+... ..+....- -+||+||||+..... ...
T Consensus 314 ~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~---~~~ 384 (667)
T TIGR00348 314 QSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE---LAK 384 (667)
T ss_pred HhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH---HHH
Confidence 87743110 111112222222222 3689999999997644321 11111111 289999999864322 223
Q ss_pred HHHHhCCCCCccEEEEeccCchhHHHHHHhhCC---CCCeEE-Eec----CC------------CcccccCCce----eE
Q 007743 272 QIMKLLPKKDRQTALFSATQTKKVEDLARLSFQ---TTPVYI-DVD----DG------------RTKVTNEGLQ----QG 327 (591)
Q Consensus 272 ~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~---~~~~~i-~~~----~~------------~~~~~~~~l~----~~ 327 (591)
.+...+| ....++||||+-..........+. ..+... .+. ++ ........+. ..
T Consensus 385 ~l~~~~p--~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 385 NLKKALK--NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHhhCC--CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 3335566 468999999975321100000111 011110 000 00 0000000000 00
Q ss_pred EEe-----------------------cCchhHHHHHHHHH-Hh------cCCCcEEEEecChhhHHHHHHHHHHc-----
Q 007743 328 YCV-----------------------VPSAKRFILLYSFL-KR------NLSKKVMVFFSSCNSVKFHSELLRYI----- 372 (591)
Q Consensus 328 ~~~-----------------------~~~~~k~~~l~~~l-~~------~~~~~~iVF~~s~~~~~~l~~~L~~~----- 372 (591)
+.. .....+...+...+ .. ...++++|||.++..|..++..|...
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000 00000111111111 11 12489999999999999999888665
Q ss_pred CCCeEeccCccCHH---------------------HHHHHHHHhhc-CCccEEEEeCccccCCCCCCCcEEEEcCCCCCh
Q 007743 373 QVDCFDIHGKQKQQ---------------------KRTTTFFDFCK-AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEP 430 (591)
Q Consensus 373 ~~~~~~lh~~~~~~---------------------~R~~~~~~F~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~ 430 (591)
+.....+++..+.. ....++++|++ +..+|||+++.+..|+|.|.+++++..-+-.+
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~- 621 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY- 621 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-
Confidence 23455666654332 12468888976 67899999999999999999999887766555
Q ss_pred hhhhhhccccccC
Q 007743 431 KEYIHRVGRTARG 443 (591)
Q Consensus 431 ~~y~qr~GR~gR~ 443 (591)
..++|.+||+.|.
T Consensus 622 h~LlQai~R~nR~ 634 (667)
T TIGR00348 622 HGLLQAIARTNRI 634 (667)
T ss_pred cHHHHHHHHhccc
Confidence 4689999999994
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=3.4e-18 Score=181.26 Aligned_cols=303 Identities=19% Similarity=0.196 Sum_probs=194.1
Q ss_pred CCCcHHHHHhhcccc----CC-CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLM----VG-KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il----~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..++.+|..||..+. .| +.+++++.||+|||.++ +.++.+|++.. .-.++|+|+-++.|..|.+..+..+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~----~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG----WVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc----hhheeeEEechHHHHHHHHHHHHHh
Confidence 458999999987654 44 35999999999999885 45667777653 4567999999999999999887766
Q ss_pred HhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC----CCCccCCceEEEEeCchhhhccccHHHHHHH
Q 007743 198 LKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT----KGFIYKNLKCLVIDEADRILEANFEEEMRQI 273 (591)
Q Consensus 198 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~----~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i 273 (591)
.... -.+..+.+..... .++|.++|..++...+... ..+....+++||+|||||=. ...+..|
T Consensus 239 ~P~~-~~~n~i~~~~~~~--------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I 305 (875)
T COG4096 239 LPFG-TKMNKIEDKKGDT--------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSI 305 (875)
T ss_pred CCCc-cceeeeecccCCc--------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHH
Confidence 4332 2222222211111 4799999999998777654 12445568999999999843 3445566
Q ss_pred HHhCCCCCccEEEEeccCchhHHH------------------HHHhhCCCCCeEEEec--CCCcccccCC----------
Q 007743 274 MKLLPKKDRQTALFSATQTKKVED------------------LARLSFQTTPVYIDVD--DGRTKVTNEG---------- 323 (591)
Q Consensus 274 ~~~l~~~~~q~ll~SAT~~~~~~~------------------l~~~~~~~~~~~i~~~--~~~~~~~~~~---------- 323 (591)
+.++.. .+ ++++||+...+.. -+..++.-++..+.+. .......+..
T Consensus 306 ~dYFdA--~~-~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 306 LDYFDA--AT-QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHH--HH-HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 666643 22 2237776553321 1111222223223221 1111111111
Q ss_pred -c---eeEEEecCch------hHH----HHHHHHHHh--cC--CCcEEEEecChhhHHHHHHHHHHc-----CCCeEecc
Q 007743 324 -L---QQGYCVVPSA------KRF----ILLYSFLKR--NL--SKKVMVFFSSCNSVKFHSELLRYI-----QVDCFDIH 380 (591)
Q Consensus 324 -l---~~~~~~~~~~------~k~----~~l~~~l~~--~~--~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh 380 (591)
+ .+.|...+.+ ... ..+..++.. .. .+|+||||.+..+++++...|... +--+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 1 1111111111 111 223334444 11 579999999999999999999875 23356677
Q ss_pred CccCHHHHHHHHHHhhc--CCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcc
Q 007743 381 GKQKQQKRTTTFFDFCK--AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARG 448 (591)
Q Consensus 381 ~~~~~~~R~~~~~~F~~--g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g 448 (591)
|.-.+.+ ..+..|.. .-..|.|+.+++..|||+|.|.+++.+..-.|...|.|++||..|..+..|
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~ 530 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLG 530 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCcccc
Confidence 7665443 34556655 335788899999999999999999999999999999999999999654444
No 129
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.80 E-value=9.3e-18 Score=169.07 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=104.9
Q ss_pred HHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCC
Q 007743 336 RFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL 413 (591)
Q Consensus 336 k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gi 413 (591)
...-|+.-++. ..+.+++|-+-|++.++.|.++|...|+.+..+|++...-+|..++...+.|.+.|||.-+.+-.|+
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGL 510 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccC
Confidence 33344444433 3468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcC-----CCCChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 414 DIPAVDWIVQYD-----PPDEPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 414 Dip~v~~VI~~~-----~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
|+|.|.+|..+| +..|-.+.+|-+|||+|. -.|.++++...
T Consensus 511 DiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN--~~GkvIlYAD~ 556 (663)
T COG0556 511 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVILYADK 556 (663)
T ss_pred CCcceeEEEEeecCccccccccchHHHHHHHHhhc--cCCeEEEEchh
Confidence 999999998876 457889999999999993 57999998765
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1e-16 Score=172.88 Aligned_cols=319 Identities=18% Similarity=0.229 Sum_probs=213.0
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|. .|+++|.-.--.+..|+ |+.+.||-||||++.+|+.-..+ .|..|-||+..--||..=.+++..+..
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL-------~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL-------TGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh-------cCCceEEEecchhhhhhhHHHHHHHHH
Confidence 455 67889987776676775 89999999999999999854322 477789999999999999999999999
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCCC-----CccCCceEEEEeCchhhh-cc--------
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTKG-----FIYKNLKCLVIDEADRIL-EA-------- 264 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~-----~~~~~l~~lVlDEah~l~-~~-------- 264 (591)
++|+.|+++..+.......... .+||+++|..-| +++|+..-. ...+.+.+.|+||+|.++ |.
T Consensus 145 fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIIS 222 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIIS 222 (925)
T ss_pred HhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccccc
Confidence 9999999988765554433222 489999999876 556654421 225678899999999765 21
Q ss_pred -------ccHHHHHHHHHhCCCC------Cc-------------------------------------------------
Q 007743 265 -------NFEEEMRQIMKLLPKK------DR------------------------------------------------- 282 (591)
Q Consensus 265 -------~f~~~~~~i~~~l~~~------~~------------------------------------------------- 282 (591)
.+...+..+...+... ..
T Consensus 223 g~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~d 302 (925)
T PRK12903 223 GGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVE 302 (925)
T ss_pred CCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 1122223333333210 01
Q ss_pred ------------------------------------------------------------cEEEEeccCchhHHHHHHhh
Q 007743 283 ------------------------------------------------------------QTALFSATQTKKVEDLARLS 302 (591)
Q Consensus 283 ------------------------------------------------------------q~ll~SAT~~~~~~~l~~~~ 302 (591)
.+.+||+|....-.++...+
T Consensus 303 YiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY 382 (925)
T PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382 (925)
T ss_pred eEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh
Confidence 12222333222222222211
Q ss_pred CCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEecc
Q 007743 303 FQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIH 380 (591)
Q Consensus 303 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh 380 (591)
-. .++.+........ ... ...+......|+..+..-+.. ..+.|+||.|.|....+.++.+|...|++..+++
T Consensus 383 ~l---~Vv~IPTnkP~~R-~D~-~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 383 NM---RVNVVPTNKPVIR-KDE-PDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred CC---CEEECCCCCCeee-eeC-CCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 10 0111111000000 000 011223345677666665553 3578999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHhhcCC-ccEEEEeCccccCCCCCCCc--------EEEEcCCCCChhhhhhhccccccCCCCcceEE
Q 007743 381 GKQKQQKRTTTFFDFCKAE-KGILLCTDVAARGLDIPAVD--------WIVQYDPPDEPKEYIHRVGRTARGEGARGNAL 451 (591)
Q Consensus 381 ~~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~~GiDip~v~--------~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i 451 (591)
+.-. ++...+-. ..|+ ..|.|||++++||.||.--. +||....|.|..---|..||+||.| .+|.+.
T Consensus 458 Ak~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG-DpGss~ 533 (925)
T PRK12903 458 AKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG-DVGESR 533 (925)
T ss_pred ccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC-CCCcce
Confidence 8744 33332222 4564 57999999999999996432 8999999999988899999999975 689999
Q ss_pred EEeChhhH
Q 007743 452 LFLIPEEL 459 (591)
Q Consensus 452 ~~~~~~e~ 459 (591)
.|++-+|.
T Consensus 534 f~lSLeD~ 541 (925)
T PRK12903 534 FFISLDDQ 541 (925)
T ss_pred EEEecchH
Confidence 99987653
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.76 E-value=2.5e-16 Score=170.93 Aligned_cols=132 Identities=23% Similarity=0.320 Sum_probs=99.8
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
-+|+ .|+++|--+.-.+.. .-|+.+.||.|||+++.+|+.-..+ .|..|.||+++..||.+-++++..+.
T Consensus 72 ~lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL-------~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 72 TLGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNAL-------TGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HhCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHh-------cCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 3565 478888766544544 4699999999999999999853322 47779999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~ 262 (591)
.++|+.++++.++.+....... =.++|+++|..-| .++|+..- ....+.+.+.|+||||.++
T Consensus 142 ~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999998887666543322 2479999999755 34444321 1235678999999999765
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=6.1e-18 Score=168.38 Aligned_cols=324 Identities=15% Similarity=0.176 Sum_probs=209.5
Q ss_pred CCCcHHHHHhhccccC-C--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 123 QFMTQIQARAVPPLMV-G--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~-g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
..++|+|..++..+.. | +.-|+..|+|+|||++-+-++.. -...+||||.+-.-+.||...+..+..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t----------ikK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT----------IKKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee----------ecccEEEEecCccCHHHHHHHHHhhcc
Confidence 3689999999988763 3 57899999999999986544321 145699999999999999999988876
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC-------CCccCCceEEEEeCchhhhccccHHHHHH
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK-------GFIYKNLKCLVIDEADRILEANFEEEMRQ 272 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-------~~~~~~l~~lVlDEah~l~~~~f~~~~~~ 272 (591)
.-+..++..+..... ....++.|+|+|+.++..-=.+.. -+.-..+.++|+||+|.+...-|+..+..
T Consensus 371 i~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSI 445 (776)
T ss_pred cCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHH
Confidence 666666666554332 234578999999987632111000 01135689999999999988888877766
Q ss_pred HHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCC--cccccCCceeEEEec-------------------
Q 007743 273 IMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGR--TKVTNEGLQQGYCVV------------------- 331 (591)
Q Consensus 273 i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~~~~~------------------- 331 (591)
+-.++. +.++||+-.+...+..+.+.-.|.....+--. .......++-.-+.|
T Consensus 446 v~aHcK------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 446 VQAHCK------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHhh------ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 655543 67999987766555554443334332211000 000000111111111
Q ss_pred ----CchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhc-CCccEEE
Q 007743 332 ----PSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK-AEKGILL 404 (591)
Q Consensus 332 ----~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~-g~~~vLv 404 (591)
-...|+....-+|+. ..+.++|||..+.-....++..| +-+ .++|..+|.+|.++++.|+- ..++.++
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhcccCCccceEE
Confidence 122333332223322 24789999977665555554443 444 48999999999999999986 4588999
Q ss_pred EeCccccCCCCCCCcEEEEcCCC-CChhhhhhhccccccCCC--Ccc---eEEEEeChh--hHH----HHHHHHHcCCCc
Q 007743 405 CTDVAARGLDIPAVDWIVQYDPP-DEPKEYIHRVGRTARGEG--ARG---NALLFLIPE--ELQ----FLRYLKAAKVPV 472 (591)
Q Consensus 405 aT~~~~~GiDip~v~~VI~~~~P-~s~~~y~qr~GR~gR~~~--~~g---~~i~~~~~~--e~~----~~~~l~~~~~~~ 472 (591)
-+-++...||+|..+++|+...- .|-.+-.||.||.-|+-. ..+ ..+.+++.+ |+. ..++|.+.|..+
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FLidQGYsf 674 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSF 674 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhhhhcCceE
Confidence 99999999999999999987654 467778999999999631 223 334444443 222 234566666443
No 133
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=3.2e-17 Score=165.35 Aligned_cols=335 Identities=13% Similarity=0.077 Sum_probs=228.0
Q ss_pred HHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 116 AIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 116 ~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.+..+.-.....+|.++|..+-+|+++++.-.|.+||+++|.+..+..+... +....+++.|+.++++.....+.
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-----HATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-----cccceecchhHHHHhhccCCceE
Confidence 3445666678899999999999999999999999999999999888766542 33457899999999875332211
Q ss_pred HHH---hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC-CC--ccCCceEEEEeCchhhhc---ccc
Q 007743 196 DLL---KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK-GF--IYKNLKCLVIDEADRILE---ANF 266 (591)
Q Consensus 196 ~~~---~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-~~--~~~~l~~lVlDEah~l~~---~~f 266 (591)
-.. ......++-.+.+.....+..-.+.+.+++++.|......+--.. .+ .+-.+.+++.||+|..+. ..-
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 432 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALA 432 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHH
Confidence 000 011122334455555555555667889999999988754432211 11 233456889999996543 112
Q ss_pred HHHHHHHHHhCC----CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc------hh-
Q 007743 267 EEEMRQIMKLLP----KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS------AK- 335 (591)
Q Consensus 267 ~~~~~~i~~~l~----~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~------~~- 335 (591)
..+++.++..+. ..+.|++-.|||+...+.....+.--+.-..+..+. .+..-++.+..-+. .+
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG-----SPs~~K~~V~WNP~~~P~~~~~~ 507 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG-----SPSSEKLFVLWNPSAPPTSKSEK 507 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC-----CCCccceEEEeCCCCCCcchhhh
Confidence 234444444432 246899999999998887766655444344444433 22223333333221 11
Q ss_pred --HH----HHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc----C----CCeEeccCccCHHHHHHHHHHhhcCCcc
Q 007743 336 --RF----ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI----Q----VDCFDIHGKQKQQKRTTTFFDFCKAEKG 401 (591)
Q Consensus 336 --k~----~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~----~----~~~~~lh~~~~~~~R~~~~~~F~~g~~~ 401 (591)
+. .++.+++.. +-++|.||++++.|+.+....+.. + -.+..|.|+-..++|.++....-.|+..
T Consensus 508 ~~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 11 233444443 578999999999988775554443 1 1356788999999999999999999999
Q ss_pred EEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEE--EeChhhHHHHH
Q 007743 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALL--FLIPEELQFLR 463 (591)
Q Consensus 402 vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~--~~~~~e~~~~~ 463 (591)
-+|||++++-||||.+.+.|++.++|.|.+.+.|..|||||.+ +...++. +..|-|..++.
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN-k~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN-KPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC-CCceEEEEEeccchhhHhhc
Confidence 9999999999999999999999999999999999999999964 4444443 34455655554
No 134
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.8e-17 Score=145.62 Aligned_cols=126 Identities=34% Similarity=0.567 Sum_probs=112.2
Q ss_pred eEEEecCchhHHHHHHHHHHhcC--CCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEE
Q 007743 326 QGYCVVPSAKRFILLYSFLKRNL--SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403 (591)
Q Consensus 326 ~~~~~~~~~~k~~~l~~~l~~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vL 403 (591)
+.+...+ ..|...+..++.... .+++||||++...++.+...|...+.++..+||+++...|..++..|.++...||
T Consensus 4 ~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 82 (131)
T cd00079 4 QYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVL 82 (131)
T ss_pred EEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 3344433 367777888887654 7899999999999999999999989999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEE
Q 007743 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453 (591)
Q Consensus 404 vaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~ 453 (591)
++|.++++|+|+|.+++||++++|++...|.|++||++|.| ..|.++++
T Consensus 83 i~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~-~~~~~~~~ 131 (131)
T cd00079 83 VATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAG-QKGTAILL 131 (131)
T ss_pred EEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCC-CCceEEeC
Confidence 99999999999999999999999999999999999999975 57877664
No 135
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.73 E-value=1.7e-15 Score=163.16 Aligned_cols=337 Identities=16% Similarity=0.173 Sum_probs=202.3
Q ss_pred CCcHHHHHhhccccC----------CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMV----------GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAV 193 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~----------g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~ 193 (591)
.++|+|++.+..+.. ..-+|++-.+|+|||+..+.-+...|.........-.++|||+|. .|+..|++.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 479999999986542 234788889999999986544433333321111122678999995 666777777
Q ss_pred HHHHHhhcCCeEEEEEcCccc-hHHHHH-Hh-----cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc
Q 007743 194 AKDLLKYHSQTVGLVIGGSAR-RGEAER-IV-----KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF 266 (591)
Q Consensus 194 ~~~~~~~~~~~~~~~~gg~~~-~~~~~~-l~-----~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f 266 (591)
+.++.....+....++|.... ...... +. -...|++.+.+.+.+++.. +....+++||+||.|++-+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh-
Confidence 777765544555556666553 001111 11 1246888899999877765 456789999999999986532
Q ss_pred HHHHHHHHHhCCCCCccEEEEeccCch-hHHHHHHhhCCCCCeEEEec--------------------------------
Q 007743 267 EEEMRQIMKLLPKKDRQTALFSATQTK-KVEDLARLSFQTTPVYIDVD-------------------------------- 313 (591)
Q Consensus 267 ~~~~~~i~~~l~~~~~q~ll~SAT~~~-~~~~l~~~~~~~~~~~i~~~-------------------------------- 313 (591)
..+...+..+. ..+.|++|+|+-. ++.++......-.|.++...
T Consensus 393 -s~~~kaL~~l~--t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 393 -SLTLKALSSLK--TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hHHHHHHHhcC--CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 34444555554 4567888999432 12221111100111111000
Q ss_pred ------------CC-CcccccCCceeEEEecCc-----------------------------------------------
Q 007743 314 ------------DG-RTKVTNEGLQQGYCVVPS----------------------------------------------- 333 (591)
Q Consensus 314 ------------~~-~~~~~~~~l~~~~~~~~~----------------------------------------------- 333 (591)
.. -..........+.+++..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 00 000000011111111110
Q ss_pred ---------------------------hhHHHHHHHHHHhcCCCcEEEEe----cChhhHHHHHHHHHHcCCCeEeccCc
Q 007743 334 ---------------------------AKRFILLYSFLKRNLSKKVMVFF----SSCNSVKFHSELLRYIQVDCFDIHGK 382 (591)
Q Consensus 334 ---------------------------~~k~~~l~~~l~~~~~~~~iVF~----~s~~~~~~l~~~L~~~~~~~~~lh~~ 382 (591)
..++..|..++.. ...++++|+ |-....+.+..++.-.|..++.+||.
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 1122223332211 112333333 33344444555555569999999999
Q ss_pred cCHHHHHHHHHHhhcCC---ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEE--eC--
Q 007743 383 QKQQKRTTTFFDFCKAE---KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF--LI-- 455 (591)
Q Consensus 383 ~~~~~R~~~~~~F~~g~---~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~--~~-- 455 (591)
|+..+|..+++.|++.. .-.|.+|-+.+.||++-+.+.||.||++|+|+.=.|.++|+-|.| ++-.|+++ ++
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG-QKk~v~iYrLlatG 707 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG-QKKPVYIYRLLATG 707 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC-CcceEEEEEeecCC
Confidence 99999999999999743 335667889999999999999999999999999999999999976 44555444 43
Q ss_pred -hhhHHHHHHHHHcCC
Q 007743 456 -PEELQFLRYLKAAKV 470 (591)
Q Consensus 456 -~~e~~~~~~l~~~~~ 470 (591)
.+|..|-+...+.++
T Consensus 708 tiEEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 708 TIEEKIYQRQTHKEGL 723 (776)
T ss_pred CchHHHHHHHHHhhhh
Confidence 366677777766544
No 136
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.73 E-value=9.6e-17 Score=175.24 Aligned_cols=320 Identities=16% Similarity=0.229 Sum_probs=210.9
Q ss_pred CCCcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
..++.+|.+.+++++ .++++|+...+|-|||+.-+ ..|..|..... ..|+ .|||+|...+... .+.+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~--~~gp-flvvvplst~~~W----~~ef~ 440 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQ--IHGP-FLVVVPLSTITAW----EREFE 440 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhh--ccCC-eEEEeehhhhHHH----HHHHH
Confidence 579999999999877 67899999999999997643 23333333211 1344 6899998776543 33444
Q ss_pred hhcCCeEEEEEcCccchHHHHHH---hc------CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHH
Q 007743 199 KYHSQTVGLVIGGSARRGEAERI---VK------GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEE 269 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l---~~------~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~ 269 (591)
..+..++.+++|.......++.. .. ..+++++|.+.++.--.. +.--.+.++++||||+|-+.. ..
T Consensus 441 ~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~--~~ 515 (1373)
T KOG0384|consen 441 TWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE--SK 515 (1373)
T ss_pred HHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH--HH
Confidence 44567788888877665544432 11 378999999988542221 223357899999999997532 23
Q ss_pred HHHHHHhCCCCCccEEEEeccCc-hhHHHHHHhhCCCCCeE---------------------------------------
Q 007743 270 MRQIMKLLPKKDRQTALFSATQT-KKVEDLARLSFQTTPVY--------------------------------------- 309 (591)
Q Consensus 270 ~~~i~~~l~~~~~q~ll~SAT~~-~~~~~l~~~~~~~~~~~--------------------------------------- 309 (591)
+...+..+. ....+++|+|.- +.+.+|..+.-.-.|..
T Consensus 516 l~~~l~~f~--~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 516 LYESLNQFK--MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHhc--ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 333444444 234567777743 34444443321001111
Q ss_pred ----------EEecCCC--------------------cccccCC-----------ceeEEEecCchhHH----------H
Q 007743 310 ----------IDVDDGR--------------------TKVTNEG-----------LQQGYCVVPSAKRF----------I 338 (591)
Q Consensus 310 ----------i~~~~~~--------------------~~~~~~~-----------l~~~~~~~~~~~k~----------~ 338 (591)
+.+.-.. ......+ -.|-|.+-....+. .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 1110000 0000000 01112211111111 1
Q ss_pred HHHHHHH-------------h--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhc---CCc
Q 007743 339 LLYSFLK-------------R--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK---AEK 400 (591)
Q Consensus 339 ~l~~~l~-------------~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~---g~~ 400 (591)
.|..+|. . ..+.++|||..-....+.|.++|...+++.-.|.|.+..+.|..++..|+. ...
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 2222222 1 235799999999999999999999999999999999999999999999996 346
Q ss_pred cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCc-ceEEEEeChh
Q 007743 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGAR-GNALLFLIPE 457 (591)
Q Consensus 401 ~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~-g~~i~~~~~~ 457 (591)
.+|+||.+.+-|||+..++.||.||.-++|..=+|..-||.|.|..+ -.+|-|++..
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 79999999999999999999999999999999999999999998533 4567777764
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.73 E-value=8.1e-18 Score=133.53 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=75.0
Q ss_pred HHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCC
Q 007743 367 ELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGE 444 (591)
Q Consensus 367 ~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~ 444 (591)
.+|+..++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999964
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.8e-14 Score=156.29 Aligned_cols=131 Identities=24% Similarity=0.317 Sum_probs=101.6
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|. .|+++|--.--.+..|+ |+.+.||-||||++.+|+.-.-+ .|..|-||++..-||..-.+++..+..
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL-------~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNAL-------TGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhh-------cCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 454 57888876666666664 99999999999999999875433 477899999999999999999999999
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-----HHHHhcC-CCCccCCceEEEEeCchhhh
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-----LDHLQNT-KGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-----~~~l~~~-~~~~~~~l~~lVlDEah~l~ 262 (591)
++|+.|+++.++..... ++..-.+||+++|+..| .+.+... .....+.+.+.||||||.++
T Consensus 152 ~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999999877664443 22334689999999987 4444322 12345788999999999765
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=1.1e-14 Score=156.65 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=57.4
Q ss_pred hccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH-hhc--CCeEEEEE
Q 007743 133 VPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL-KYH--SQTVGLVI 209 (591)
Q Consensus 133 i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~-~~~--~~~~~~~~ 209 (591)
...+..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+. +.. ++.+.++.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-----~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lk 84 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-----PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFP 84 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-----cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 34455778999999999999999999999876531 35789999999999999999988887 332 34444444
Q ss_pred cC
Q 007743 210 GG 211 (591)
Q Consensus 210 gg 211 (591)
|+
T Consensus 85 Gr 86 (636)
T TIGR03117 85 GS 86 (636)
T ss_pred CC
Confidence 43
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.71 E-value=7e-15 Score=168.42 Aligned_cols=109 Identities=23% Similarity=0.270 Sum_probs=79.6
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHcCC--CeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC--CcEEE
Q 007743 347 NLSKKVMVFFSSCNSVKFHSELLRYIQV--DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA--VDWIV 422 (591)
Q Consensus 347 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~--v~~VI 422 (591)
..++++|||++|....+.++..|..... ....+.-+++...|..+++.|+++...||++|..+..|||+|+ +++||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3467999999999999999999975422 1222333444456889999999998899999999999999997 47888
Q ss_pred EcCCCC----C--------------------------hhhhhhhccccccCCCCcceEEEEeCh
Q 007743 423 QYDPPD----E--------------------------PKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 423 ~~~~P~----s--------------------------~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
...+|- + .-.+.|.+||.-|.....|. ++++.+
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~-v~ilD~ 892 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT-VFVLDR 892 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE-EEEecC
Confidence 876653 1 12336889999996545554 333333
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.71 E-value=2.5e-15 Score=149.87 Aligned_cols=315 Identities=16% Similarity=0.178 Sum_probs=204.6
Q ss_pred CCcHHHHHhhcccc-CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcC
Q 007743 124 FMTQIQARAVPPLM-VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202 (591)
Q Consensus 124 ~~~~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~ 202 (591)
.+.|+|++.+...+ .|..+++...+|-|||+.++ ++...++.. ...|||||..- -..|.+.+++++....
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl--aIA~yyraE------wplliVcPAsv-rftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL--AIARYYRAE------WPLLIVCPASV-RFTWAKALNRFLPSIH 268 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH--HHHHHHhhc------CcEEEEecHHH-hHHHHHHHHHhccccc
Confidence 46899999888766 67889999999999999975 445555542 23789999643 3455666666654332
Q ss_pred CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCc
Q 007743 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282 (591)
Q Consensus 203 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~ 282 (591)
.+.++.++.+.... +.....|.|.+++.|..+-.- +....+.+||+||.|.|-+.. ......++..+.. -.
T Consensus 269 -pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~-ak 339 (689)
T KOG1000|consen 269 -PIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKV-AK 339 (689)
T ss_pred -ceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhccc-hhhhhhhhhHHHH-hh
Confidence 25556665544322 223367899999887543221 334558999999999876532 2334555554444 56
Q ss_pred cEEEEeccCch-------------------hHHHHHHhhCCCCCeEEEecCCC------------------------ccc
Q 007743 283 QTALFSATQTK-------------------KVEDLARLSFQTTPVYIDVDDGR------------------------TKV 319 (591)
Q Consensus 283 q~ll~SAT~~~-------------------~~~~l~~~~~~~~~~~i~~~~~~------------------------~~~ 319 (591)
++||+|+|..- ...+++..++....+.+..+... ...
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999421 11122222221111111100000 000
Q ss_pred ccCCceeEEEecC-------------------------------------chhHHHHHHHHHHh------cCCCcEEEEe
Q 007743 320 TNEGLQQGYCVVP-------------------------------------SAKRFILLYSFLKR------NLSKKVMVFF 356 (591)
Q Consensus 320 ~~~~l~~~~~~~~-------------------------------------~~~k~~~l~~~l~~------~~~~~~iVF~ 356 (591)
.+..-++....+. ...|...+.++|.. ..+.+.+||+
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 0111111111111 01122233333333 3367999999
Q ss_pred cChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC-ccE-EEEeCccccCCCCCCCcEEEEcCCCCChhhhh
Q 007743 357 SSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE-KGI-LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYI 434 (591)
Q Consensus 357 ~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~-~~v-LvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~ 434 (591)
......+.+...++..+++...+.|..+...|....+.|+..+ +.| +++-.+++.|+++...+.|++..+|+++.-.+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 9999999999999999999999999999999999999999754 443 55778899999999999999999999999999
Q ss_pred hhccccccCCCCcceEEEEeCh
Q 007743 435 HRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 435 qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
|.-.|+.|.|......+.++.-
T Consensus 580 QAEDRaHRiGQkssV~v~ylvA 601 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYLVA 601 (689)
T ss_pred echhhhhhccccceeeEEEEEe
Confidence 9999999998665555555543
No 142
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.70 E-value=7.3e-16 Score=167.81 Aligned_cols=322 Identities=18% Similarity=0.225 Sum_probs=207.1
Q ss_pred CcHHHHHhhcccc--C--CCcEEEEccCCCCchHHhHHHHHHHHHhc--ccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 125 MTQIQARAVPPLM--V--GKDVLGAARTGSGKTLAFLIPAVELLYNA--QFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 125 ~~~~Q~~~i~~il--~--g~dvlv~a~TGsGKTl~~~lp~l~~l~~~--~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
++.+|++.+.++. + +-+-|+|..+|-|||+..+--+..-.++. .....+....|||||. .|+-.|...+.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 6889999998854 2 23789999999999998643333333332 1222344568999995 67888888888876
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
.+ +++...+|+...+...+.-.+..+|+|++++.+.+-+.. +.-..+.|.|+||.|-|-+ -...+....+.+.
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN--~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKN--SKTKLTKAVKQLR 1127 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecc--hHHHHHHHHHHHh
Confidence 65 466667777666655555566789999999988643332 2224578999999997754 2345555556665
Q ss_pred CCCccEEEEeccCc-hhHHHHHHh--------------------------------------------------------
Q 007743 279 KKDRQTALFSATQT-KKVEDLARL-------------------------------------------------------- 301 (591)
Q Consensus 279 ~~~~q~ll~SAT~~-~~~~~l~~~-------------------------------------------------------- 301 (591)
. ...+++|+|.- +++.++..+
T Consensus 1128 a--~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1128 A--NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred h--cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 3 34566788821 111111111
Q ss_pred -----hCCC-CCeEEE-----e---------------------cCCCcccccCC--------cee--------EEEec--
Q 007743 302 -----SFQT-TPVYID-----V---------------------DDGRTKVTNEG--------LQQ--------GYCVV-- 331 (591)
Q Consensus 302 -----~~~~-~~~~i~-----~---------------------~~~~~~~~~~~--------l~~--------~~~~~-- 331 (591)
.+.. +|.+|. . ..+....+... ++. ..+..
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 0000 011110 0 00000000000 000 00000
Q ss_pred ---------------------CchhHHHHHHHHHHhc----------------CCCcEEEEecChhhHHHHHHHHHHcC-
Q 007743 332 ---------------------PSAKRFILLYSFLKRN----------------LSKKVMVFFSSCNSVKFHSELLRYIQ- 373 (591)
Q Consensus 332 ---------------------~~~~k~~~l~~~l~~~----------------~~~~~iVF~~s~~~~~~l~~~L~~~~- 373 (591)
...-|+.+|-++|... ...++||||.-+...+.+..-|-+.-
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 1123555666666542 13589999999999998887775542
Q ss_pred --CCeEeccCccCHHHHHHHHHHhhcC-CccEEE-EeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCc-c
Q 007743 374 --VDCFDIHGKQKQQKRTTTFFDFCKA-EKGILL-CTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGAR-G 448 (591)
Q Consensus 374 --~~~~~lh~~~~~~~R~~~~~~F~~g-~~~vLv-aT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~-g 448 (591)
+....+.|..++.+|.++.++|+++ .++||+ +|-|.+-|+|+.+.+.||+++--|+|..-.|.+.||.|.|... -
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 3445899999999999999999998 577655 7899999999999999999999999999999999999987432 2
Q ss_pred eEEEEeCh
Q 007743 449 NALLFLIP 456 (591)
Q Consensus 449 ~~i~~~~~ 456 (591)
.++-+++.
T Consensus 1446 NVyRlItr 1453 (1549)
T KOG0392|consen 1446 NVYRLITR 1453 (1549)
T ss_pred eeeeehhc
Confidence 33444443
No 143
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.69 E-value=1.4e-15 Score=159.54 Aligned_cols=336 Identities=15% Similarity=0.213 Sum_probs=212.6
Q ss_pred CcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 125 MTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 125 ~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
+-++|.-.+.++. .+-+.|+...+|-|||... +..+..|..... +| .-|||||...|- +|++++.++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~---~g-pHLVVvPsSTle----NWlrEf~kw 470 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN---PG-PHLVVVPSSTLE----NWLREFAKW 470 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC---CC-CcEEEecchhHH----HHHHHHHHh
Confidence 7899999998865 4557799999999999773 444555554322 33 369999987764 456666666
Q ss_pred cC-CeEEEEEcCccchHHHHHHh----cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHH
Q 007743 201 HS-QTVGLVIGGSARRGEAERIV----KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMK 275 (591)
Q Consensus 201 ~~-~~~~~~~gg~~~~~~~~~l~----~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~ 275 (591)
++ +.+...+|......+.+... .+++|+++|+.....--....-+.-.++.++|+||+|.|-+.+- ..+..++.
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy~~LM~ 549 (941)
T KOG0389|consen 471 CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERYKHLMS 549 (941)
T ss_pred CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHHHHhcc
Confidence 65 45666677665555544332 25899999997553211111112234688999999998877542 33444443
Q ss_pred hCCCCCccEEEEeccCc-hhHHHHHHh-----------------------------------------------------
Q 007743 276 LLPKKDRQTALFSATQT-KKVEDLARL----------------------------------------------------- 301 (591)
Q Consensus 276 ~l~~~~~q~ll~SAT~~-~~~~~l~~~----------------------------------------------------- 301 (591)
. + ..+.+++|+|.- +.+.+|..+
T Consensus 550 I-~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 550 I-N--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred c-c--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 3 2 456788888832 111111111
Q ss_pred -----hCCCCCeEEE-e-----cC-------------------CCcccccCC----------------ceeEEE------
Q 007743 302 -----SFQTTPVYID-V-----DD-------------------GRTKVTNEG----------------LQQGYC------ 329 (591)
Q Consensus 302 -----~~~~~~~~i~-~-----~~-------------------~~~~~~~~~----------------l~~~~~------ 329 (591)
.+..-|..+. + .. ...+..... .+++|.
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 0110010000 0 00 000000000 000000
Q ss_pred ------------ecC-------------------------------------chhHHHHHHHHHHh--cCCCcEEEEecC
Q 007743 330 ------------VVP-------------------------------------SAKRFILLYSFLKR--NLSKKVMVFFSS 358 (591)
Q Consensus 330 ------------~~~-------------------------------------~~~k~~~l~~~l~~--~~~~~~iVF~~s 358 (591)
.+. ...|...|..+|.. ..+.++|||..-
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 000 12233444444433 224699999988
Q ss_pred hhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC--ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhh
Q 007743 359 CNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE--KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHR 436 (591)
Q Consensus 359 ~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~--~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr 436 (591)
....+.|...|..+++....+.|.+.-..|..++..|...+ ..+|++|-+.+-|||+..+++||.||+..+|-.-.|.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 88899999999999999999999999999999999999865 4678899999999999999999999999999999999
Q ss_pred ccccccCCCCc-ceEEEEeChhhH-HHHHHHHHcCCCcc
Q 007743 437 VGRTARGEGAR-GNALLFLIPEEL-QFLRYLKAAKVPVK 473 (591)
Q Consensus 437 ~GR~gR~~~~~-g~~i~~~~~~e~-~~~~~l~~~~~~~~ 473 (591)
-.||.|.|..+ -.++.|++..-. ..+..|.+.++.++
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le 905 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALE 905 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhh
Confidence 99999988543 445666666543 34555555544443
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=2.2e-15 Score=133.71 Aligned_cols=144 Identities=45% Similarity=0.633 Sum_probs=108.8
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 219 (591)
+++++.++||+|||.+++.++...... ....+++|++|++.++.|+.+.+...... +..+..+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-----LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH
Confidence 468999999999999988887766543 23567999999999999999988877655 567777777766665555
Q ss_pred HHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccC
Q 007743 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQ 291 (591)
Q Consensus 220 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~ 291 (591)
......+|+++|++.+...+.... .....++++|+||+|.+....+............. ..+++++|||+
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK-DRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc-cceEEEEeccC
Confidence 556779999999999988776654 34567899999999999875544432122222333 78899999995
No 145
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.4e-14 Score=158.29 Aligned_cols=323 Identities=18% Similarity=0.199 Sum_probs=217.1
Q ss_pred CCCcHHHHHhhccccCC-CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH-HHHHhh
Q 007743 123 QFMTQIQARAVPPLMVG-KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA-KDLLKY 200 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~-~~~~~~ 200 (591)
....|+|.++++.+.+. .++++.+|+|||||.|+-++++. +.+..++++++|.-+.+..++..+ +++...
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 34589999999998865 56899999999999998877764 245678999999999998766555 455556
Q ss_pred cCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc------cHHHHHHHH
Q 007743 201 HSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN------FEEEMRQIM 274 (591)
Q Consensus 201 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~------f~~~~~~i~ 274 (591)
.|..+..+.|...... .+....+|+|+||+++- .++ ....+++.|.||.|.+.+.. ... ++.|.
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d-~lq-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia 1283 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWD-LLQ-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIA 1283 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHH-HHh-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHH
Confidence 6666666666554433 23445799999999974 343 34678999999999877411 112 55566
Q ss_pred HhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHH----HHHHHHh--cC
Q 007743 275 KLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL----LYSFLKR--NL 348 (591)
Q Consensus 275 ~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~----l~~~l~~--~~ 348 (591)
..+-+ ..+++.+|..+.+. .++ .++.. ..++...+.........--|.+........+.. .+..+.+ ..
T Consensus 1284 ~q~~k-~ir~v~ls~~lana-~d~--ig~s~-~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~ 1358 (1674)
T KOG0951|consen 1284 SQLEK-KIRVVALSSSLANA-RDL--IGASS-SGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGN 1358 (1674)
T ss_pred HHHHh-heeEEEeehhhccc-hhh--ccccc-cceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcC
Confidence 66655 77888888887754 333 22222 333333333222222212222333333333222 2223332 34
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----------------------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----------------------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT 406 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----------------------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT 406 (591)
.++.+||+++++.+..++.-|-.. .+..++-|.+|+..+..-+...|..|.+.|+|..
T Consensus 1359 ~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s 1438 (1674)
T KOG0951|consen 1359 RKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMS 1438 (1674)
T ss_pred CCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEE
Confidence 789999999999998776544221 1223333999999999999999999999999987
Q ss_pred CccccCCCCCCCcEEEE-----cC------CCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccc
Q 007743 407 DVAARGLDIPAVDWIVQ-----YD------PPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKE 474 (591)
Q Consensus 407 ~~~~~GiDip~v~~VI~-----~~------~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 474 (591)
.- ..|+-... +.||- || .+.......|++|+|.| .|.|+++.......+++.......|++.
T Consensus 1439 ~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~----~~k~vi~~~~~~k~yykkfl~e~lPves 1511 (1674)
T KOG0951|consen 1439 RD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG----AGKCVIMCHTPKKEYYKKFLYEPLPVES 1511 (1674)
T ss_pred cc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC----CccEEEEecCchHHHHHHhccCcCchHH
Confidence 76 77777643 34442 33 35568889999999999 3789999999888888877666566543
No 146
>COG4889 Predicted helicase [General function prediction only]
Probab=99.61 E-value=1.3e-15 Score=160.51 Aligned_cols=328 Identities=18% Similarity=0.184 Sum_probs=187.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC----CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEE
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG----KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVI 178 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g----~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~l 178 (591)
.|+.+.. ..+...|.-..-..|+|+|+.||...++| ..-=+.+.+|+|||++.+- +.+.+. ..++|
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala--------~~~iL 210 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA--------AARIL 210 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh--------hhheE
Confidence 4544433 34444554455568999999999988765 2234567789999998643 445543 35799
Q ss_pred EEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch-----------------------H--HHHHHhcCCCEEEeCch
Q 007743 179 VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR-----------------------G--EAERIVKGVNLLVATPG 233 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~-----------------------~--~~~~l~~~~~Iiv~Tp~ 233 (591)
+|+|+..|..|..+.+..- +.+.+....++.+.... . ...+-..+.-||++|+.
T Consensus 211 ~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQ 289 (1518)
T COG4889 211 FLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQ 289 (1518)
T ss_pred eecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEccc
Confidence 9999999999966555432 12233333333222110 0 00111234679999999
Q ss_pred HHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC----CCccEEEEeccCchhHH-------------
Q 007743 234 RLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK----KDRQTALFSATQTKKVE------------- 296 (591)
Q Consensus 234 ~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~----~~~q~ll~SAT~~~~~~------------- 296 (591)
.+...-.... .-+..++++|.|||||.........=..-+..+.. +....+.++||..---+
T Consensus 290 Sl~~i~eAQe-~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l 368 (1518)
T COG4889 290 SLPRIKEAQE-AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL 368 (1518)
T ss_pred chHHHHHHHH-cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee
Confidence 8865443332 45678999999999986542111100000111110 12234556666321100
Q ss_pred -----------HHHH--------hhCCCCCeEEEecCCCcccccCCceeEEEecC------chhHHHHHHHHH-HhcC--
Q 007743 297 -----------DLAR--------LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP------SAKRFILLYSFL-KRNL-- 348 (591)
Q Consensus 297 -----------~l~~--------~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~------~~~k~~~l~~~l-~~~~-- 348 (591)
.+.+ ..+.....++.+..... .....+++...... .-.++.-...-| ++..
T Consensus 369 ~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~-~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 369 SSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKE-VIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechh-hhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 0111 11111222221111100 00011111111111 011111111111 1111
Q ss_pred ------------CCcEEEEecChhhHHHHHHHHHHc---------------CCCeEeccCccCHHHHHHHHH---HhhcC
Q 007743 349 ------------SKKVMVFFSSCNSVKFHSELLRYI---------------QVDCFDIHGKQKQQKRTTTFF---DFCKA 398 (591)
Q Consensus 349 ------------~~~~iVF~~s~~~~~~l~~~L~~~---------------~~~~~~lh~~~~~~~R~~~~~---~F~~g 398 (591)
..+.|-||.++++...+++.+... .+.+-.+.|.|...+|.+.+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 136788999988888777766531 345566779999999966655 35667
Q ss_pred CccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccC
Q 007743 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARG 443 (591)
Q Consensus 399 ~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~ 443 (591)
+++||---..++.|+|+|..+-||+|++-.+..+.+|.+||..|-
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 788988888899999999999999999999999999999999994
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.59 E-value=1.6e-13 Score=148.54 Aligned_cols=123 Identities=15% Similarity=0.222 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC--ccEEEEeCccc
Q 007743 335 KRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE--KGILLCTDVAA 410 (591)
Q Consensus 335 ~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~--~~vLvaT~~~~ 410 (591)
.|+..|.-+|++ ..+.++|||+.-.+..+.|..+|...|+-.+.+.|....++|...++.|+... ...|++|-..+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 344444444443 23789999999999999999999999999999999999999999999999865 46788999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCC-cceEEEEeChh
Q 007743 411 RGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGA-RGNALLFLIPE 457 (591)
Q Consensus 411 ~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~-~g~~i~~~~~~ 457 (591)
.|||+.+.+.||+||--|++..-.|.-.|+.|.|.. .-..|-|++..
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999999988777777777776542 34556666653
No 148
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=2.2e-13 Score=152.50 Aligned_cols=111 Identities=25% Similarity=0.300 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCC-eEeccCccCHHHHHHHHHHhhcCCc-cEEEEeCccccCCCCC
Q 007743 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVD-CFDIHGKQKQQKRTTTFFDFCKAEK-GILLCTDVAARGLDIP 416 (591)
Q Consensus 339 ~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~~~~R~~~~~~F~~g~~-~vLvaT~~~~~GiDip 416 (591)
.+..++... ++++|||++|....+.+.+.+...... ....+|..+ +...++.|..+.- .++|+|..++.|||+|
T Consensus 470 ~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 344444443 559999999999999999999876653 344455544 3478888887655 9999999999999999
Q ss_pred C--CcEEEEcCCCC------------------------------ChhhhhhhccccccCCCCcceEEEE
Q 007743 417 A--VDWIVQYDPPD------------------------------EPKEYIHRVGRTARGEGARGNALLF 453 (591)
Q Consensus 417 ~--v~~VI~~~~P~------------------------------s~~~y~qr~GR~gR~~~~~g~~i~~ 453 (591)
+ .+.||..++|. ......|.+||.-|..+..|..+++
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 7 47788877663 2234579999999954444555554
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.58 E-value=2.1e-12 Score=143.65 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=58.9
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc-CCCeEeccCccCHHHHHHHHHHhh----cCCccEEEEeCccccCCCCCC--CcE
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI-QVDCFDIHGKQKQQKRTTTFFDFC----KAEKGILLCTDVAARGLDIPA--VDW 420 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~R~~~~~~F~----~g~~~vLvaT~~~~~GiDip~--v~~ 420 (591)
..+.++||++|....+.++..|... +..+ ..+|.. .|..+++.|+ .+...||++|..+..|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 4556999999999999999988743 3343 345542 4667786666 467889999999999999997 788
Q ss_pred EEEcCCC
Q 007743 421 IVQYDPP 427 (591)
Q Consensus 421 VI~~~~P 427 (591)
||...+|
T Consensus 609 vII~kLP 615 (697)
T PRK11747 609 VIITKIP 615 (697)
T ss_pred EEEEcCC
Confidence 9987766
No 150
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=1.5e-14 Score=135.00 Aligned_cols=153 Identities=21% Similarity=0.225 Sum_probs=101.3
Q ss_pred CCcHHHHHhhccccC-------CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMV-------GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~-------g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
.|+++|.+++..+.. .+.+++.+|||||||.+++..+.... . ++++++|+..|+.|+.+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c---------ceeEecCHHHHHHHHHHHHHH
Confidence 479999999998883 68999999999999999876554442 1 799999999999999988865
Q ss_pred HHhhcCCeEEE-----------EEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC----------CCccCCceEEEE
Q 007743 197 LLKYHSQTVGL-----------VIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK----------GFIYKNLKCLVI 255 (591)
Q Consensus 197 ~~~~~~~~~~~-----------~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~----------~~~~~~l~~lVl 255 (591)
+.......... ..................+++++|...|........ ........+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 54322111111 011111112222234567999999999987765321 122456789999
Q ss_pred eCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 256 DEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 256 DEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
||||++.... .+..++. . ....+++||||+.
T Consensus 153 DEaH~~~~~~---~~~~i~~-~--~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDS---SYREIIE-F--KAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHH---HHHHHHH-S--SCCEEEEEESS-S
T ss_pred ehhhhcCCHH---HHHHHHc-C--CCCeEEEEEeCcc
Confidence 9999887643 1445555 2 2677999999975
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=6.4e-15 Score=117.81 Aligned_cols=81 Identities=37% Similarity=0.650 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccC
Q 007743 364 FHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARG 443 (591)
Q Consensus 364 ~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~ 443 (591)
.++..|...++.+..+||+++..+|..++..|.++...|||+|+++++|+|+|.+++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 007743 444 E 444 (591)
Q Consensus 444 ~ 444 (591)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 3
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.56 E-value=5.4e-13 Score=147.09 Aligned_cols=330 Identities=20% Similarity=0.218 Sum_probs=189.2
Q ss_pred CCcHHHHHhhccccC--------CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMV--------GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~--------g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.-+.+|-+|+..+.. |-=+|--|.||+|||++=. -|+..|.. ...|.+..|..-.|.|-.|.-+.++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd----~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD----DKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC----CCCCceEEEEccccceeccchHHHH
Confidence 346789888887653 1125566999999998832 23333322 2456788888889999888888888
Q ss_pred HHHhhcCCeEEEEEcCccchHHHH------------------HHh-------------------------c--------C
Q 007743 196 DLLKYHSQTVGLVIGGSARRGEAE------------------RIV-------------------------K--------G 224 (591)
Q Consensus 196 ~~~~~~~~~~~~~~gg~~~~~~~~------------------~l~-------------------------~--------~ 224 (591)
+-.........+++|+........ .+. + .
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 776655556666666643222111 000 0 1
Q ss_pred CCEEEeCchHHHHHHhcCC--CCccC--C--ceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHH-
Q 007743 225 VNLLVATPGRLLDHLQNTK--GFIYK--N--LKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVED- 297 (591)
Q Consensus 225 ~~Iiv~Tp~~L~~~l~~~~--~~~~~--~--l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~- 297 (591)
.+|+|||+..++....... ...+. . =+.|||||+|..-...+ ..+..++..+......++++|||+|+.+..
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 5899999999987653211 11111 1 26799999996544322 234444544333467899999999998743
Q ss_pred HHHh----------hCCC--CCeEEEe---cCCCccc--------------------------ccCCceeEEEecCch--
Q 007743 298 LARL----------SFQT--TPVYIDV---DDGRTKV--------------------------TNEGLQQGYCVVPSA-- 334 (591)
Q Consensus 298 l~~~----------~~~~--~~~~i~~---~~~~~~~--------------------------~~~~l~~~~~~~~~~-- 334 (591)
+... .... .+..|.. ++..... .+..-.-.+..++..
T Consensus 642 L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~ 721 (1110)
T TIGR02562 642 LFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPR 721 (1110)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCccc
Confidence 2221 1111 2222221 1100000 000001122223221
Q ss_pred ---hHHHHHHHHH--------Hhc----C-CCc----EEEEecChhhHHHHHHHHHHc------CCCeEeccCccCHHHH
Q 007743 335 ---KRFILLYSFL--------KRN----L-SKK----VMVFFSSCNSVKFHSELLRYI------QVDCFDIHGKQKQQKR 388 (591)
Q Consensus 335 ---~k~~~l~~~l--------~~~----~-~~~----~iVF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~R 388 (591)
.....+...+ ..+ . .++ .+|-+++++.+-.++..|-.. .+.++.||+..+...|
T Consensus 722 ~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~R 801 (1110)
T TIGR02562 722 ENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLR 801 (1110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHH
Confidence 1111222222 111 1 122 255566676666666655443 3457889999988888
Q ss_pred HHHHHHh----------------------hc----CCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhcccccc
Q 007743 389 TTTFFDF----------------------CK----AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTAR 442 (591)
Q Consensus 389 ~~~~~~F----------------------~~----g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR 442 (591)
..+.+.. .+ +...|+|+|.+.+.|+|+ +.+++|- -|.+..+.+||+||+.|
T Consensus 802 s~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R 878 (1110)
T TIGR02562 802 SYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNR 878 (1110)
T ss_pred HHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccc
Confidence 7776542 11 356899999999999999 6676653 46679999999999999
Q ss_pred CCC-CcceEEEEeChhhHHHH
Q 007743 443 GEG-ARGNALLFLIPEELQFL 462 (591)
Q Consensus 443 ~~~-~~g~~i~~~~~~e~~~~ 462 (591)
.+. ..+..-+++.......+
T Consensus 879 ~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 879 HRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred cccCCCCCCcEEEeHhHHHHh
Confidence 652 22233344444454444
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1e-12 Score=144.25 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=99.0
Q ss_pred CchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC-ccEEEEeCc
Q 007743 332 PSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE-KGILLCTDV 408 (591)
Q Consensus 332 ~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~-~~vLvaT~~ 408 (591)
....|+.++..-+.. ..+.|+||-+.|+...+.++.+|...+++.-+|++.....+-.-+.+ .|+ -.|-|||++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccC
Confidence 345667666665544 35889999999999999999999999999888888765444433333 343 468999999
Q ss_pred cccCCCCC--------CCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhh
Q 007743 409 AARGLDIP--------AVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458 (591)
Q Consensus 409 ~~~GiDip--------~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e 458 (591)
++||-||. +==+||-...|.|..---|-.||+||.| .+|.+..|++-+|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSLED 742 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG-DPGSSQFYVSLED 742 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC-CCCcceEEEEccc
Confidence 99999997 3347898999999999999999999975 7899999998765
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=1.8e-11 Score=137.25 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=60.2
Q ss_pred CCCCCCcHHHHHhhcc----ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVPP----LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~----il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
+-|..++|.|.+.+.. +..|+++++.||||+|||++.+.|++...... ....++++++.|..=..|+.+.++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~----~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK----PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc----cccccEEEEcccchHHHHHHHHHH
Confidence 4577779999876654 55789999999999999999999999876532 123578999999998889888888
Q ss_pred HHH
Q 007743 196 DLL 198 (591)
Q Consensus 196 ~~~ 198 (591)
++.
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 753
No 155
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.41 E-value=5.6e-11 Score=119.09 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=93.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC-cc-EEEEeCccccCCCCCCCcEEEEcCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE-KG-ILLCTDVAARGLDIPAVDWIVQYDP 426 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~-~~-vLvaT~~~~~GiDip~v~~VI~~~~ 426 (591)
.-+.|||.......+.+.-.|...|+.|+.+.|+|++..|..+++.|.+.- +. .||+-.+.+.-+|+...++|+.+|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 457889888777888888888889999999999999999999999999854 44 5667788888999999999999999
Q ss_pred CCChhhhhhhccccccCCC-CcceEEEEeChhh
Q 007743 427 PDEPKEYIHRVGRTARGEG-ARGNALLFLIPEE 458 (591)
Q Consensus 427 P~s~~~y~qr~GR~gR~~~-~~g~~i~~~~~~e 458 (591)
.++++--.|...|..|.|. ++-.++.|+..+.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 9999999999999999875 3456677776654
No 156
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.37 E-value=5.7e-12 Score=135.95 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC---ccEEEEeCc
Q 007743 334 AKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE---KGILLCTDV 408 (591)
Q Consensus 334 ~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~---~~vLvaT~~ 408 (591)
..|+.+|-.++-. ..+.+++.||.-......+..+|...++....+.|.....+|...+..|+.-. ..+|++|.+
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 3466666666654 34789999999999999999999999999999999999999999999999744 357889999
Q ss_pred cccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEE
Q 007743 409 AARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453 (591)
Q Consensus 409 ~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~ 453 (591)
.+.|+|+...+.||.||.-+++....|+.-|+.|.|. ...+-++
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq-~~evRv~ 832 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQ-KKEVRVL 832 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhc-hhheeee
Confidence 9999999999999999999999999999999999874 3444443
No 157
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.35 E-value=2.9e-11 Score=125.93 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=82.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhc--C-CccEEEEeCccccCCCCCCCcEEEEcC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK--A-EKGILLCTDVAARGLDIPAVDWIVQYD 425 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~--g-~~~vLvaT~~~~~GiDip~v~~VI~~~ 425 (591)
..+++|...=......+...|...|+....+||.....+|..+++.|+. | ....|++-.+.+.|||+-+.+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 4455554333344466677888889999999999999999999999985 4 334556678889999999999999999
Q ss_pred CCCChhhhhhhccccccCCCCcceE
Q 007743 426 PPDEPKEYIHRVGRTARGEGARGNA 450 (591)
Q Consensus 426 ~P~s~~~y~qr~GR~gR~~~~~g~~ 450 (591)
+-|+++-=-|...|..|.|..+-..
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceE
Confidence 9999999999999999987544433
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.35 E-value=4.3e-11 Score=124.40 Aligned_cols=122 Identities=18% Similarity=0.335 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC-ccEEEEeCcccc
Q 007743 335 KRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE-KGILLCTDVAAR 411 (591)
Q Consensus 335 ~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~~ 411 (591)
.|+..|-.+|.. ..+.++|+|+.-.+....+.++|...++....+.|.....+|..++.+|+... .-+|++|.+.+-
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 345555555544 34679999999999999999999999999999999999999999999999855 457889999999
Q ss_pred CCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcc-eEEEEeCh
Q 007743 412 GLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARG-NALLFLIP 456 (591)
Q Consensus 412 GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g-~~i~~~~~ 456 (591)
||++...+.||+||.-++|..-.|...||.|.|.... .++-+++.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999875332 34444443
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.34 E-value=1.6e-10 Score=126.45 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=93.3
Q ss_pred EccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH---HHHHH
Q 007743 145 AARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG---EAERI 221 (591)
Q Consensus 145 ~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l 221 (591)
.+.+|||||-+|+-.+-..+. .|..+|||+|...|..|+...++.... +..+..++++.+... .+..+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~-------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR-------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH-------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHH
Confidence 334699999999776655543 367899999999999999988876532 255777777665543 33444
Q ss_pred hcC-CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc---cccH---HHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 222 VKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFE---EEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 222 ~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~---~~f~---~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
..| ..|||+|-..++ ..+.++++||+||=|.-+- .+.. .++....... .+..+++.|||.+-+
T Consensus 237 ~~G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~--~~~~lvLgSaTPSle 306 (665)
T PRK14873 237 LRGQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ--HGCALLIGGHARTAE 306 (665)
T ss_pred hCCCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH--cCCcEEEECCCCCHH
Confidence 444 799999976653 3478899999999994332 1112 2333333333 268899999998877
Q ss_pred HHHHHH
Q 007743 295 VEDLAR 300 (591)
Q Consensus 295 ~~~l~~ 300 (591)
....+.
T Consensus 307 s~~~~~ 312 (665)
T PRK14873 307 AQALVE 312 (665)
T ss_pred HHHHHh
Confidence 655544
No 160
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=99.34 E-value=2.3e-12 Score=96.64 Aligned_cols=64 Identities=50% Similarity=0.722 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHhcC-cCccccccCCcCHHHHHHHcCCCCCCCccc
Q 007743 484 NVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSH-SMKDIFNVHRLDLQAVAASFCFSSPPKVNL 547 (591)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~f~~~~~~~~~l~~~~g~~~~p~~~~ 547 (591)
+++..++.++..++.+.+.+.+||++|+++|.+| .++.+|+++++|++++|+||||..+|+|++
T Consensus 1 ~iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~~ 65 (65)
T PF13959_consen 1 NIQQKLEKLVAKDRELKELAQKAFVSYVRAYASHKELKDIFNVKKLDLGHLAKSFGLLEAPKVRE 65 (65)
T ss_pred CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhCCcccCCHHHHHHHcCCCCCCCCCC
Confidence 3678899999999999999999999999999999 999999999999999999999999999863
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.31 E-value=1.4e-10 Score=125.26 Aligned_cols=291 Identities=15% Similarity=0.159 Sum_probs=176.4
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 220 (591)
-.++.||+|||||.+..-++-+.+. ..+.++|+|+..+.|+.++...++...- .++..-.-.++.....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~------~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~~---- 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK------NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIIDG---- 119 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc------CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccccc----
Confidence 3578899999999885444333221 2467899999999999998887764311 1211111111111110
Q ss_pred HhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHH------HHHHhCCCCCccEEEEeccCchh
Q 007743 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMR------QIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 221 l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~------~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
...+-++++.+.|..... -.+.++++|||||+-.++.+-|.+.+. .++..+-.....+|++-||+...
T Consensus 120 --~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 120 --RPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --cccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 124677777777765432 235679999999999877654433222 22332222367899999999999
Q ss_pred HHHHHHhhCCCCCeEEEecCCCcccccCCceeEEE----------------------------------ecCchhHHHHH
Q 007743 295 VEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYC----------------------------------VVPSAKRFILL 340 (591)
Q Consensus 295 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~----------------------------------~~~~~~k~~~l 340 (591)
.-++........++.+.+..-.... ...-.-.+. ...........
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~-fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPG-FSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCC-cccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 9888886544444443332210000 000000000 00001111112
Q ss_pred HHHHHh-cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 341 YSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 341 ~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
-.++.. ..+.++-||++|...++.++++.......+..+++.-+..+. +.| ++.+|++.|.+...|+++....
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhh
Confidence 222222 336788899999999999999999999999999887766522 222 5689999999999999996543
Q ss_pred E--EEEc--CCC--CChhhhhhhccccccCCCCcceEEEEeChh
Q 007743 420 W--IVQY--DPP--DEPKEYIHRVGRTARGEGARGNALLFLIPE 457 (591)
Q Consensus 420 ~--VI~~--~~P--~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~ 457 (591)
+ |.-| ... .+..+.+|++||.-... ....++++...
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~--~~ei~v~~d~~ 388 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL--DNEIYVYIDAS 388 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhhc--cCeEEEEEecc
Confidence 3 3333 222 24556899999998864 46777777654
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.19 E-value=4.6e-10 Score=130.65 Aligned_cols=111 Identities=19% Similarity=0.322 Sum_probs=97.3
Q ss_pred hHHHHHHHHH-Hh--cCCC--cEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcC--CccEEEEeC
Q 007743 335 KRFILLYSFL-KR--NLSK--KVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA--EKGILLCTD 407 (591)
Q Consensus 335 ~k~~~l~~~l-~~--~~~~--~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g--~~~vLvaT~ 407 (591)
.|...+..++ .. .... +++||+........+...|...++.++.++|.++...|...+..|.++ ...++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666666 22 2344 899999999999999999999998999999999999999999999986 456777888
Q ss_pred ccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCC
Q 007743 408 VAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEG 445 (591)
Q Consensus 408 ~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~ 445 (591)
+++.|+|+...++||+||+.+++....|...|+.|.|.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ 809 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQ 809 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999864
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.19 E-value=3e-10 Score=97.65 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=79.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
.|+--++-.++|+|||.-.+.-++..-+. .+.++|||.|||.++..+.+.++.. +..+. ..... .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~--~- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM--R- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee--c-
Confidence 35556889999999998765555544433 4778999999999999888776532 22222 11110 0
Q ss_pred HHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcc--ccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEA--NFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~--~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
....+.-|-|+|.+.+...+.+. ....+++++|+||||-.-.. -++..+..... .....++++|||.|...
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~---~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHFTDPTSIAARGYLRELAE---SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH---TTS-EEEEEESS-TT--
T ss_pred --cccCCCcccccccHHHHHHhcCc--ccccCccEEEEeccccCCHHHHhhheeHHHhhh---ccCeeEEEEeCCCCCCC
Confidence 12345678899999988877663 45689999999999964321 12222222221 12357999999998764
No 164
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.16 E-value=1e-09 Score=117.53 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHc----------------------CCCeEeccCccCHHHHHH
Q 007743 335 KRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI----------------------QVDCFDIHGKQKQQKRTT 390 (591)
Q Consensus 335 ~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~----------------------~~~~~~lh~~~~~~~R~~ 390 (591)
.|+.+|+.+|+. ..+.+.|||..+......+..+|... |...+.|.|......|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 456678888876 34789999999999999998888753 456788999999999999
Q ss_pred HHHHhhcCC----ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEE
Q 007743 391 TFFDFCKAE----KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF 453 (591)
Q Consensus 391 ~~~~F~~g~----~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~ 453 (591)
....|++-. .-.||+|.+.+-|||+-..+.||.||..|+|.--.|-+=|+-|.|. .-.|+++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQ-tKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQ-TKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcC-cCceeeh
Confidence 999999732 3589999999999999999999999999999999999999999764 4444443
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.07 E-value=1e-08 Score=111.76 Aligned_cols=320 Identities=20% Similarity=0.292 Sum_probs=191.8
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCe
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT 204 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~ 204 (591)
+..+|.-. .+.-...-++-+.||-||||+..+|+.-.- ..|..+.+++..--||.--.+++..+..++++.
T Consensus 81 ~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylna-------L~gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 81 HFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNA-------LAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred hhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHh-------cCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 34455443 344444568999999999999999975332 246778999999999999999999999999999
Q ss_pred EEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh-c--------cc----
Q 007743 205 VGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL-E--------AN---- 265 (591)
Q Consensus 205 ~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~--------~~---- 265 (591)
+++...+.......... .|||.++|-..| .++|+.+- ......+.+.|+||+|-++ + .|
T Consensus 152 vG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~ 229 (822)
T COG0653 152 VGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAED 229 (822)
T ss_pred eeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccccc
Confidence 99999888655443333 489999999876 44443321 1234568899999999655 1 11
Q ss_pred ---cHHHHHHHHHhCCCC-------CccEEEEecc-Cc--------------hh------HHH-H-HHhhCCCCCeEEE-
Q 007743 266 ---FEEEMRQIMKLLPKK-------DRQTALFSAT-QT--------------KK------VED-L-ARLSFQTTPVYID- 311 (591)
Q Consensus 266 ---f~~~~~~i~~~l~~~-------~~q~ll~SAT-~~--------------~~------~~~-l-~~~~~~~~~~~i~- 311 (591)
+...+..+...+... ..+.+.++-. +. .. +.. + +...+..+..+|.
T Consensus 230 ~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVr 309 (822)
T COG0653 230 SSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVR 309 (822)
T ss_pred CchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEe
Confidence 122333333322210 0111111111 00 00 000 0 0000000000000
Q ss_pred ------ecC--C---------------------------------------------------Cccc------ccCCcee
Q 007743 312 ------VDD--G---------------------------------------------------RTKV------TNEGLQQ 326 (591)
Q Consensus 312 ------~~~--~---------------------------------------------------~~~~------~~~~l~~ 326 (591)
++. + .... ..-++..
T Consensus 310 d~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~v 389 (822)
T COG0653 310 DGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDV 389 (822)
T ss_pred cCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCce
Confidence 000 0 0000 0000000
Q ss_pred E---------------EEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHH
Q 007743 327 G---------------YCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRT 389 (591)
Q Consensus 327 ~---------------~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~ 389 (591)
. ........|+..+...+.. ..+.|+||-+.++...+.++..|...+++..++++.-...+-.
T Consensus 390 v~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 390 VVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred eeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 0 1112245677777666654 4588999999999999999999999999988888877644433
Q ss_pred HHHHHhhcCCccEEEEeCccccCCCCCCCc-----------EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhh
Q 007743 390 TTFFDFCKAEKGILLCTDVAARGLDIPAVD-----------WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458 (591)
Q Consensus 390 ~~~~~F~~g~~~vLvaT~~~~~GiDip~v~-----------~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e 458 (591)
.+... --.-.|=|||++++||-||.--. +||-..--.|-.---|--||+||.| .+|.+..|++-++
T Consensus 470 Iia~A--G~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQA--GQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLED 546 (822)
T ss_pred HHhhc--CCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-CcchhhhhhhhHH
Confidence 33332 22245889999999999985322 2443333344444458889999975 6899988888665
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.4e-09 Score=108.48 Aligned_cols=76 Identities=21% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCCCCCcHHHHH----hhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQAR----AVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 120 ~~~~~~~~~Q~~----~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
+.|. ++|.|.+ ++..+..|.++++.||||+|||++|++|++..+...... ..+.+++|+++|..+..|....++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-ccccceeEEeccHHHHHHHHHHHH
Confidence 3444 5999998 455566889999999999999999999998776542110 023479999999999988877776
Q ss_pred HH
Q 007743 196 DL 197 (591)
Q Consensus 196 ~~ 197 (591)
++
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.4e-09 Score=108.48 Aligned_cols=76 Identities=21% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCCCCCcHHHHH----hhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQAR----AVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 120 ~~~~~~~~~Q~~----~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
+.|. ++|.|.+ ++..+..|.++++.||||+|||++|++|++..+...... ..+.+++|+++|..+..|....++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-ccccceeEEeccHHHHHHHHHHHH
Confidence 3444 5999998 455566889999999999999999999998776542110 023479999999999988877776
Q ss_pred HH
Q 007743 196 DL 197 (591)
Q Consensus 196 ~~ 197 (591)
++
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 168
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.04 E-value=1e-09 Score=110.85 Aligned_cols=146 Identities=20% Similarity=0.220 Sum_probs=85.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
..+.++++..+|+|||+..+..+ ..+..... ......+|||+|. .+..|+...+.++.......+....|.......
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~-~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALI-SYLKNEFP-QRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHH-HHHHHCCT-TSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhh-hhhhhccc-cccccceeEeecc-chhhhhhhhhccccccccccccccccccccccc
Confidence 44679999999999998865544 33333211 1112259999999 777898988888875545566655555412222
Q ss_pred HHHHhcCCCEEEeCchHHH-----HHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 218 AERIVKGVNLLVATPGRLL-----DHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L~-----~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
........+++|+|++.+. ..... +...++++||+||+|.+-+.. ......+..+. ....+++|||+.
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~--~~~~~lLSgTP~ 173 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKRYKALRKLR--ARYRWLLSGTPI 173 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHHHHHHHCCC--ECEEEEE-SS-S
T ss_pred cccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--ccccccccccc--cceEEeeccccc
Confidence 2223345799999999998 11111 112348999999999985432 34444455565 567888999954
Q ss_pred h
Q 007743 293 K 293 (591)
Q Consensus 293 ~ 293 (591)
.
T Consensus 174 ~ 174 (299)
T PF00176_consen 174 Q 174 (299)
T ss_dssp S
T ss_pred c
Confidence 4
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.91 E-value=2.6e-08 Score=96.67 Aligned_cols=132 Identities=23% Similarity=0.373 Sum_probs=97.6
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
..|+ .|+++|.-++-.+..|+ |++..||=|||++..+|+.-..+ .|..|-|++....||..=++++..+.
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-------~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-------QGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-------TSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-------hcCCcEEEeccHHHhhccHHHHHHHH
Confidence 3454 68999998887777776 99999999999998888765543 46779999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC----CC-ccCCceEEEEeCchhhh
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK----GF-IYKNLKCLVIDEADRIL 262 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~----~~-~~~~l~~lVlDEah~l~ 262 (591)
..+++.++.+.++.......... .++|+++|...+ .++|+..- .. ..+.+.++||||||.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999987754322222 378999999987 44554322 11 24678999999999765
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.89 E-value=1.5e-08 Score=108.46 Aligned_cols=306 Identities=18% Similarity=0.204 Sum_probs=180.5
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
.+..+.-+++.+.||+|||..+.--+|+.++..... ....+.+.-|+|.-++-+.+.+.+- ....++-.+|-...
T Consensus 389 ~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g--~~~na~v~qprrisaisiaerva~e---r~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 389 AVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG--ASFNAVVSQPRRISAISLAERVANE---RGEEVGETCGYNVR 463 (1282)
T ss_pred HHhcCceeeEeecccccchhHHHHHHHHHHhhcccc--ccccceeccccccchHHHHHHHHHh---hHHhhccccccccc
Confidence 344556678899999999999988888887764321 1224667779999888876655432 12222222222211
Q ss_pred hHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh-ccccHHHHHH-HHHhCCCCCccEEEEeccCc
Q 007743 215 RGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQ-IMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 215 ~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~-~~~f~~~~~~-i~~~l~~~~~q~ll~SAT~~ 292 (591)
.... .-..---|+.||-|-++..+.+. +..+.++|+||.|..- +..|...+.. +....+ ...++++|||+.
T Consensus 464 f~Sa-~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~--dl~v~lmsatId 536 (1282)
T KOG0921|consen 464 FDSA-TPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYR--DLRVVLMSATID 536 (1282)
T ss_pred cccc-ccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccch--hhhhhhhhcccc
Confidence 1110 00111368899999999888764 4668899999999432 2223222211 111111 445555666654
Q ss_pred hhHHHHHHhhCCCCCeE-----------------------EE----------ecCCCcccccCCceeEEEec--------
Q 007743 293 KKVEDLARLSFQTTPVY-----------------------ID----------VDDGRTKVTNEGLQQGYCVV-------- 331 (591)
Q Consensus 293 ~~~~~l~~~~~~~~~~~-----------------------i~----------~~~~~~~~~~~~l~~~~~~~-------- 331 (591)
.... ..++..-|.. +. ............-+..-..+
T Consensus 537 Td~f---~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 537 TDLF---TNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred hhhh---hhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 3321 0111111100 00 00000000000000000000
Q ss_pred -------Cchh----HHHHHHHHH-HhcCCCcEEEEecChhhHHHHHHHHHHc-------CCCeEeccCccCHHHHHHHH
Q 007743 332 -------PSAK----RFILLYSFL-KRNLSKKVMVFFSSCNSVKFHSELLRYI-------QVDCFDIHGKQKQQKRTTTF 392 (591)
Q Consensus 332 -------~~~~----k~~~l~~~l-~~~~~~~~iVF~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~R~~~~ 392 (591)
.... -...+...+ .....+-++||.+.-.....|...|... ...++.+|+.+...+..++.
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 0000 111122222 2244778999999999998888887653 35788999999999999999
Q ss_pred HHhhcCCccEEEEeCccccCCCCCCCcEEEEcCC------------------CCChhhhhhhccccccCCCCcceEEEEe
Q 007743 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDP------------------PDEPKEYIHRVGRTARGEGARGNALLFL 454 (591)
Q Consensus 393 ~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------P~s~~~y~qr~GR~gR~~~~~g~~i~~~ 454 (591)
+....|..++|+.|.++...+.+.++.+||..+. ..+....+||.||+||. ++|.|..++
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv--R~G~~f~lc 771 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV--RPGFCFHLC 771 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee--ccccccccc
Confidence 9999999999999999999999999888886442 23555679999999995 579998887
Q ss_pred Chh
Q 007743 455 IPE 457 (591)
Q Consensus 455 ~~~ 457 (591)
+.-
T Consensus 772 s~a 774 (1282)
T KOG0921|consen 772 SRA 774 (1282)
T ss_pred HHH
Confidence 653
No 171
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.80 E-value=2.4e-06 Score=98.30 Aligned_cols=297 Identities=20% Similarity=0.164 Sum_probs=162.5
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 219 (591)
+..++-=-||||||++....+ +.+... ...+.+++|+-.+.|-.|+.+.+..+........ ...+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHH
Confidence 457888889999999855433 333332 3567899999999999999999998866543222 2233333334
Q ss_pred HHhcC-CCEEEeCchHHHHHHhcCCCC-ccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHH
Q 007743 220 RIVKG-VNLLVATPGRLLDHLQNTKGF-IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVED 297 (591)
Q Consensus 220 ~l~~~-~~Iiv~Tp~~L~~~l~~~~~~-~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~ 297 (591)
.+..+ ..|||+|-..|-..+...... .-.+=-+||+|||||-- ++..-..+-..++ ....++||+|+--.-..
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~--~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK--KAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc--cceEEEeeCCccccccc
Confidence 44434 489999999998777554111 12223478999999842 3333344445555 47789999996433211
Q ss_pred H-HHhhCCCCCeEE-EecCCCcccccCCceeEEEec-C------------------------------------------
Q 007743 298 L-ARLSFQTTPVYI-DVDDGRTKVTNEGLQQGYCVV-P------------------------------------------ 332 (591)
Q Consensus 298 l-~~~~~~~~~~~i-~~~~~~~~~~~~~l~~~~~~~-~------------------------------------------ 332 (591)
- ....+.. .... .+.+. ......+...|... .
T Consensus 420 ~tt~~~fg~-ylh~Y~i~da--I~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 496 (962)
T COG0610 420 DTTKDVFGD-YLHTYTITDA--IRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAM 496 (962)
T ss_pred cchhhhhcc-eeEEEecchh--hccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhc
Confidence 1 1111111 1111 11100 00000001111000 0
Q ss_pred -chhH---HHHHHHHHH--hcCCCcEEEEecChhhHHHHHHHHHHcCC---------------------C--eEeccCcc
Q 007743 333 -SAKR---FILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQV---------------------D--CFDIHGKQ 383 (591)
Q Consensus 333 -~~~k---~~~l~~~l~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~---------------------~--~~~lh~~~ 383 (591)
.... ...++.... .....++.+.++++..+..+.+....... . ....|...
T Consensus 497 ~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 576 (962)
T COG0610 497 LAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL 576 (962)
T ss_pred chHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH
Confidence 0000 001111111 12356777777777744444433322100 0 00012222
Q ss_pred CHHHHHHHHHH--hhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCC---cceEEEEeC
Q 007743 384 KQQKRTTTFFD--FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGA---RGNALLFLI 455 (591)
Q Consensus 384 ~~~~R~~~~~~--F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~---~g~~i~~~~ 455 (591)
.. .+...... ......++||.+|.+-.|.|-|.++.+. .|-|.-.-..+|.+-||.|..+. .|..+-|..
T Consensus 577 ~~-~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 577 KD-EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HH-HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 22 22233333 3346789999999999999999887654 57777778899999999996532 355555544
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.75 E-value=2.7e-09 Score=116.35 Aligned_cols=168 Identities=19% Similarity=0.192 Sum_probs=113.5
Q ss_pred CCcHHHHHhhcccc-CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcC
Q 007743 124 FMTQIQARAVPPLM-VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202 (591)
Q Consensus 124 ~~~~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~ 202 (591)
.+.|+|.+.+-.+. ...++++.+|||+|||++|.+.+...+.. .++.++++++|..+|+..-.+.+.......+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-----~p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-----YPGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-----CCCccEEEEcCCchhhcccccchhhhcccCC
Confidence 55677777776554 34688999999999999999988877655 3567899999999998876666655544447
Q ss_pred CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC-ccCCceEEEEeCchhhhccccHHHHHHHHHhCCC--
Q 007743 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF-IYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK-- 279 (591)
Q Consensus 203 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~-~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~-- 279 (591)
+++.-+.|.....-. -...++|+|+||++...+.+++... .+.++..+|+||.|++.+ ++.+.+..+......
T Consensus 1002 ~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCc
Confidence 777777776654411 2245899999999998877754322 367899999999997654 444444444332211
Q ss_pred ----CCccEEEEeccCchhHHHHHHh
Q 007743 280 ----KDRQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 280 ----~~~q~ll~SAT~~~~~~~l~~~ 301 (591)
...+.+.+| |......+++.+
T Consensus 1078 ~~t~~~vr~~gls-ta~~na~dla~w 1102 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLS-TALANANDLADW 1102 (1230)
T ss_pred cccCcchhhhhHh-hhhhccHHHHHH
Confidence 134455444 333344555554
No 173
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.51 E-value=7.1e-06 Score=87.15 Aligned_cols=119 Identities=16% Similarity=0.283 Sum_probs=91.9
Q ss_pred cEEEEecChhhHHHHHHHHHHcCC------------------CeEeccCccCHHHHHHHHHHhhcCC---ccEEEEeCcc
Q 007743 351 KVMVFFSSCNSVKFHSELLRYIQV------------------DCFDIHGKQKQQKRTTTFFDFCKAE---KGILLCTDVA 409 (591)
Q Consensus 351 ~~iVF~~s~~~~~~l~~~L~~~~~------------------~~~~lh~~~~~~~R~~~~~~F~~g~---~~vLvaT~~~ 409 (591)
++|||..+......+.+.|....+ ..+.+.|..+...|.+.+++|++.- .-+|++|.+.
T Consensus 721 kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag 800 (1387)
T KOG1016|consen 721 KILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAG 800 (1387)
T ss_pred eEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccc
Confidence 789998888888888888876522 3457889999999999999998732 3688899999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEE--eChh--hHH-HHHHHHHcCC
Q 007743 410 ARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLF--LIPE--ELQ-FLRYLKAAKV 470 (591)
Q Consensus 410 ~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~--~~~~--e~~-~~~~l~~~~~ 470 (591)
.-||++-..+-+|.||.-+++.--.|.+-|..|.|. .-.|+++ +.+. |.. |-+.|.+.|.
T Consensus 801 ~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ-~KpcfvYRlVmD~~lEkkIydRQIsKqGm 865 (1387)
T KOG1016|consen 801 SLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQ-QKPCFVYRLVMDNSLEKKIYDRQISKQGM 865 (1387)
T ss_pred cccceeeccceEEEEEeecCccccchhhhhhhhhcC-cCceeEEeehhhhhhHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999763 4455444 4443 222 3345555553
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.37 E-value=4.5e-05 Score=82.67 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=55.3
Q ss_pred CccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCC-CCcceE-----------EEEeChhhHHHHHHHH
Q 007743 399 EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGE-GARGNA-----------LLFLIPEELQFLRYLK 466 (591)
Q Consensus 399 ~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~-~~~g~~-----------i~~~~~~e~~~~~~l~ 466 (591)
..+.|++--++-.|.|-|+|=.++-.....|..+=.|.+||.-|.. +..|.- .+++...+..|++.|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999932 233332 3456667888888874
Q ss_pred H
Q 007743 467 A 467 (591)
Q Consensus 467 ~ 467 (591)
.
T Consensus 563 k 563 (985)
T COG3587 563 K 563 (985)
T ss_pred H
Confidence 3
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.36 E-value=4.5e-06 Score=93.61 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=84.9
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH-HHh------hcCCeE--EEEEc
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD-LLK------YHSQTV--GLVIG 210 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~-~~~------~~~~~~--~~~~g 210 (591)
.++.+.++||+|||.+|+-.++...... ...+.||+||+.++-..+...+.. ..+ +.+..+ ..+-+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-----~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S 134 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-----GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINA 134 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-----CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEec
Confidence 4799999999999999988776654332 345689999999998887766652 111 112222 22222
Q ss_pred Cc-------cchHHHHHHhc-------CCCEEEeCchHHHHHHh--c--------CCCCc---cCC-ceEEEEeCchhhh
Q 007743 211 GS-------ARRGEAERIVK-------GVNLLVATPGRLLDHLQ--N--------TKGFI---YKN-LKCLVIDEADRIL 262 (591)
Q Consensus 211 g~-------~~~~~~~~l~~-------~~~Iiv~Tp~~L~~~l~--~--------~~~~~---~~~-l~~lVlDEah~l~ 262 (591)
+. ........+.. ...|+|+|-+.|..-.. . ..... +.. =-+||+||.|++.
T Consensus 135 ~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 135 GDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFP 214 (986)
T ss_pred CcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCC
Confidence 21 11233333322 46899999998854211 0 00001 111 1479999999985
Q ss_pred ccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 263 EANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 263 ~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
.. ...+..| ..+.+ .-++.||||.+.
T Consensus 215 ~~--~k~~~~i-~~lnp--l~~lrysAT~~~ 240 (986)
T PRK15483 215 RD--NKFYQAI-EALKP--QMIIRFGATFPD 240 (986)
T ss_pred cc--hHHHHHH-HhcCc--ccEEEEeeecCC
Confidence 42 2244555 33432 236779999986
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.30 E-value=1.7e-05 Score=88.86 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=49.7
Q ss_pred CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 224 GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 224 ~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
...|+++||..|..-|-... +.+..+..|||||||++....-...+..+...-.+ ..-+.+|||.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~-~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLYRQKNK-TGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHHHHhCC-CcceEEecCCCcc
Confidence 35899999999865554444 78899999999999999874444445555555444 5668889998654
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.30 E-value=5.4e-06 Score=77.37 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 122 FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 122 ~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
+...++-|..++..++...-+++.||.|||||+.++..+++.+... ...+++|+-|..+... .+ .+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-----~~~kiii~Rp~v~~~~-------~l-Gfl 68 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-----EYDKIIITRPPVEAGE-------DL-GFL 68 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-----S-SEEEEEE-S--TT------------SS
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCcEEEEEecCCCCcc-------cc-ccC
Confidence 3457899999999999888899999999999999998888887652 3456788888765311 11 111
Q ss_pred CCeEE-EE----------EcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHH
Q 007743 202 SQTVG-LV----------IGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEM 270 (591)
Q Consensus 202 ~~~~~-~~----------~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~ 270 (591)
+.... .+ ............+.....|-+.++..+ +. ..+++ .+||+|||+.+. ..++
T Consensus 69 pG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----RG---rt~~~-~~iIvDEaQN~t----~~~~ 136 (205)
T PF02562_consen 69 PGDLEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----RG---RTFDN-AFIIVDEAQNLT----PEEL 136 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----TT-----B-S-EEEEE-SGGG------HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----cC---ccccc-eEEEEecccCCC----HHHH
Confidence 00000 00 000001112223334456666665443 11 22332 799999999875 3577
Q ss_pred HHHHHhCCCCCccEEEEe
Q 007743 271 RQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 271 ~~i~~~l~~~~~q~ll~S 288 (591)
..++..+.. +.+++++.
T Consensus 137 k~ilTR~g~-~skii~~G 153 (205)
T PF02562_consen 137 KMILTRIGE-GSKIIITG 153 (205)
T ss_dssp HHHHTTB-T-T-EEEEEE
T ss_pred HHHHcccCC-CcEEEEec
Confidence 788888776 66666544
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.21 E-value=6.3e-06 Score=77.46 Aligned_cols=124 Identities=20% Similarity=0.241 Sum_probs=71.1
Q ss_pred CCcHHHHHhhccccCCC--cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 124 FMTQIQARAVPPLMVGK--DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
.|++-|.+++..++.+. -++++|+.|+|||.+. -.+...+.. .+..+++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~------~g~~v~~~apT~~Aa~~L~~~~------- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA------AGKRVIGLAPTNKAAKELREKT------- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH------TT--EEEEESSHHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh------CCCeEEEECCcHHHHHHHHHhh-------
Confidence 37899999999997554 4678899999999763 334444333 3678999999999887644431
Q ss_pred CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC---CCccCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 202 SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK---GFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 202 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~---~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
+.. ..|-..++....... ...+....+||||||-.+.. ..+..++..++
T Consensus 67 ~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~ 118 (196)
T PF13604_consen 67 GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAK 118 (196)
T ss_dssp TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-
T ss_pred Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHH
Confidence 111 122222211111100 00134567999999997643 46777788777
Q ss_pred CCCccEEEEec
Q 007743 279 KKDRQTALFSA 289 (591)
Q Consensus 279 ~~~~q~ll~SA 289 (591)
....+++++-=
T Consensus 119 ~~~~klilvGD 129 (196)
T PF13604_consen 119 KSGAKLILVGD 129 (196)
T ss_dssp T-T-EEEEEE-
T ss_pred hcCCEEEEECC
Confidence 64566666543
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.21 E-value=6.6e-06 Score=79.65 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=50.4
Q ss_pred CCcHHHHHhhccccCCCc-EEEEccCCCCchHHhHHHHHHHHHhc--ccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMVGKD-VLGAARTGSGKTLAFLIPAVELLYNA--QFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~~lp~l~~l~~~--~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
++.+-|..|+..++.... .++.||.|+|||.+.. -++..++.. ......+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 9999999999995533 333443210 01123577899999999999998888777
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.16 E-value=3.8e-06 Score=76.81 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=58.9
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcC----CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC--ccccCCCCCC--Cc
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQ----VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD--VAARGLDIPA--VD 419 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~----~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~--~~~~GiDip~--v~ 419 (591)
.++++|||++|....+.+...+.... +.++ .. ....+..+++.|.++...||+|+. .++.|||+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~--~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF--VQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE--ES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceee--ec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 46899999999999999999887653 3332 22 356788899999999999999999 9999999997 77
Q ss_pred EEEEcCCCC
Q 007743 420 WIVQYDPPD 428 (591)
Q Consensus 420 ~VI~~~~P~ 428 (591)
.||..++|.
T Consensus 84 ~vii~glPf 92 (167)
T PF13307_consen 84 AVIIVGLPF 92 (167)
T ss_dssp EEEEES---
T ss_pred eeeecCCCC
Confidence 899988874
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=7e-05 Score=71.94 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=80.7
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH-------HHHH
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI-------QTHA 192 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~-------q~~~ 192 (591)
.++...+..|...+..+.++.-+++.|++|+|||+..+..+++.+... .-.+++|.-|+.+... .+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-----~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-----DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-----CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 355667899999999888888899999999999998877777665442 2344566657654311 0111
Q ss_pred HHHHHHhhcCCeEEEEEcCccchHHHHHHh--cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHH
Q 007743 193 VAKDLLKYHSQTVGLVIGGSARRGEAERIV--KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEM 270 (591)
Q Consensus 193 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~ 270 (591)
.+..+....-.....+.|. .....+. ..-.|-|... .+++... +. -++||+|||+.+.. .++
T Consensus 130 K~~p~~~pi~D~L~~~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt---l~-~~~vIvDEaqn~~~----~~~ 193 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT---FE-NAVVILDEAQNVTA----AQM 193 (262)
T ss_pred HHHHHHHHHHHHHHHHhCh----HHHHHHHHhccCcEEEecH----HHhcCCc---cc-CCEEEEechhcCCH----HHH
Confidence 1111111100000001111 1112111 1223444443 3343332 22 37999999998743 577
Q ss_pred HHHHHhCCCCCccEEE
Q 007743 271 RQIMKLLPKKDRQTAL 286 (591)
Q Consensus 271 ~~i~~~l~~~~~q~ll 286 (591)
..++..+.. +.++++
T Consensus 194 k~~ltR~g~-~sk~v~ 208 (262)
T PRK10536 194 KMFLTRLGE-NVTVIV 208 (262)
T ss_pred HHHHhhcCC-CCEEEE
Confidence 788888875 555554
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.86 E-value=0.00019 Score=70.12 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=109.0
Q ss_pred ccCCCCHHHHHHHHHCCCCCCcHHHHHhhcccc----------CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCC
Q 007743 105 DSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLM----------VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNG 174 (591)
Q Consensus 105 ~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il----------~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~ 174 (591)
-.+.|++.+... | .++..|.+++-.+. .+.-.++-..||.||--...--|+..+++ ..
T Consensus 24 y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~------Gr 91 (303)
T PF13872_consen 24 YRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR------GR 91 (303)
T ss_pred cccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc------CC
Confidence 345666655443 3 46888888876543 23468888999999987755556666654 24
Q ss_pred cEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCC--Ccc-----
Q 007743 175 TGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKG--FIY----- 247 (591)
Q Consensus 175 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~--~~~----- 247 (591)
.++|.++.+-.|-....+.++.+... .+.+..+.. .... .. ..-.-.||++|+..|...-..... ..+
T Consensus 92 ~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 92 KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC-cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 56899999999999888888877543 222222211 0000 00 111346999999888665432110 001
Q ss_pred ----CCceEEEEeCchhhhcccc--------HHHHHHHHHhCCCCCccEEEEeccCchhHHHH
Q 007743 248 ----KNLKCLVIDEADRILEANF--------EEEMRQIMKLLPKKDRQTALFSATQTKKVEDL 298 (591)
Q Consensus 248 ----~~l~~lVlDEah~l~~~~f--------~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l 298 (591)
..=.+|||||||.+-+..- ...+..+-..+|+ .+++.+|||--.+..++
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~--ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN--ARVVYASATGASEPRNM 227 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC--CcEEEecccccCCCcee
Confidence 1125899999998876422 1345556667774 56999999987766554
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.82 E-value=0.00011 Score=69.35 Aligned_cols=127 Identities=18% Similarity=0.290 Sum_probs=80.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccC---CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEE
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMV---GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVI 178 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~---g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~l 178 (591)
..|+...-+.+++=.+. .++ -+++.|.++...+.+ |++.+.+.-+|.|||.+ ++|++..++.. ...-+.
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd-----g~~Lvr 74 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD-----GSRLVR 74 (229)
T ss_pred CCCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC-----CCcEEE
Confidence 34666666666654432 233 579999998887774 67999999999999988 68888877753 234566
Q ss_pred EEcCChHHHHHHHHHHHHHHh-hcCCeEEEEEcCcc--c-h---HHHH----HHhcCCCEEEeCchHHHH
Q 007743 179 VICPTRELAIQTHAVAKDLLK-YHSQTVGLVIGGSA--R-R---GEAE----RIVKGVNLLVATPGRLLD 237 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~-~~~~~~~~~~gg~~--~-~---~~~~----~l~~~~~Iiv~Tp~~L~~ 237 (591)
+++| ++|..|.+..+..-.. ..+-.+..+--... . . .... .....-.|+++||+.++.
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 6666 5789998888876543 33333333221111 1 0 1111 222345799999998754
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.81 E-value=7.9e-05 Score=78.44 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=60.8
Q ss_pred HHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 116 AIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 116 ~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.+...|+..+..-|..|+.++|+..-.|+++|.|+|||.+..--+.+.... ....+||++|+.-.+.|+.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh------cCCceEEEcccchhHHHHHHHHH
Confidence 344567888999999999999999999999999999998865444443322 45669999999999999888776
Q ss_pred HH
Q 007743 196 DL 197 (591)
Q Consensus 196 ~~ 197 (591)
+.
T Consensus 476 ~t 477 (935)
T KOG1802|consen 476 KT 477 (935)
T ss_pred hc
Confidence 54
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.80 E-value=5.1e-05 Score=79.52 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCcHHHHHhhccccCCCc-EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMVGKD-VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.+.+-|..|+..+++.++ .+++||+|+|||.+-..-+.+.+. .+.++||.+||.+.+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-------cCCeEEEEcCchHHHHHHHHHhc
Confidence 478899999999998876 568899999999886665555443 36889999999999988888543
No 186
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.73 E-value=0.00016 Score=79.47 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=88.4
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC-c-cEEEEeCccccCCCCCCCcEEEEcCCC
Q 007743 350 KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE-K-GILLCTDVAARGLDIPAVDWIVQYDPP 427 (591)
Q Consensus 350 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~-~-~vLvaT~~~~~GiDip~v~~VI~~~~P 427 (591)
.++|||..-..-...+...|...++....+.|.|+...|.+.+..|..+. . ..|++.-+.+-|+++....+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999998888888888888888999999999999999999999999654 2 345678888999999999999999999
Q ss_pred CChhhhhhhccccccCCCCcceEE
Q 007743 428 DEPKEYIHRVGRTARGEGARGNAL 451 (591)
Q Consensus 428 ~s~~~y~qr~GR~gR~~~~~g~~i 451 (591)
+++..--|.+-|+.|.|..+-.-+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999875444444
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.71 E-value=0.00011 Score=75.92 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=66.8
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 220 (591)
-++|.|..|||||+..+-- +..+. ....+..++++++...|...+...+.....
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--------------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQ----NSEEGKKVLYLCGNHPLRNKLREQLAKKYN--------------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhh----ccccCCceEEEEecchHHHHHHHHHhhhcc---------------------
Confidence 3689999999999885432 23321 113467789999999998877776654320
Q ss_pred HhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc-------cHHHHHHHHHh
Q 007743 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-------FEEEMRQIMKL 276 (591)
Q Consensus 221 l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~-------f~~~~~~i~~~ 276 (591)
.......+..|..+...+... ......+++||+||||+|...+ ....+..+++.
T Consensus 57 -~~~~~~~~~~~~~~i~~~~~~-~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -PKLKKSDFRKPTSFINNYSES-DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -cchhhhhhhhhHHHHhhcccc-cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 000123344555554433311 1235678999999999998821 23566666655
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.68 E-value=0.00033 Score=77.56 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=52.1
Q ss_pred CCCcHHHHHhhccccCC-CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLMVG-KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
..+++.|..++..++.. ..+++.||+|+|||.+..-.+ ..+.. .+.++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii-~~~~~------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELI-RQLVK------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHH-HHHHH------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999998877 567899999999997644333 33332 356899999999999988877765
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.67 E-value=0.00038 Score=76.07 Aligned_cols=142 Identities=21% Similarity=0.203 Sum_probs=83.6
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeE
Q 007743 126 TQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTV 205 (591)
Q Consensus 126 ~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~ 205 (591)
.++|+.++..++.++-+++.|+.|+|||.+. ..++..+.... ....+.++++++||--.|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~-~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQS-PKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc-cccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 3799999999999999999999999999763 22333332211 11113568999999998887776655432211100
Q ss_pred EEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCC-----CccCCceEEEEeCchhhhccccHHHHHHHHHhCCCC
Q 007743 206 GLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKG-----FIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK 280 (591)
Q Consensus 206 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-----~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~ 280 (591)
.. ......+-..|-.+|+........ -....+++||||||-++. ...+..++..++.
T Consensus 224 ---------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~- 285 (586)
T TIGR01447 224 ---------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP- 285 (586)
T ss_pred ---------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC-
Confidence 00 000112223444444332211100 112357899999999553 3467778888876
Q ss_pred CccEEEEe
Q 007743 281 DRQTALFS 288 (591)
Q Consensus 281 ~~q~ll~S 288 (591)
..++|++.
T Consensus 286 ~~rlIlvG 293 (586)
T TIGR01447 286 NTKLILLG 293 (586)
T ss_pred CCEEEEEC
Confidence 66776643
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.60 E-value=0.00021 Score=55.54 Aligned_cols=53 Identities=26% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
+.-+++.||.|||||...+--+ ..+.... . ..+.+++|++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i-~~l~~~~-~-~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI-AELLAAR-A-DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHHHHHh-c-CCCCeEEEECCCHHHHHHHHHHH
Confidence 3345569999999997644333 3333211 1 12678999999999999887776
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.58 E-value=0.00053 Score=75.12 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=84.1
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCe
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT 204 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~ 204 (591)
..++|+.|+...+.++-+++.|++|+|||.+.. -++..+... .......+++++||...|..+.+.+.......+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~--~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQL--ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHh--cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 358999999999999999999999999997632 223333221 11123578899999999888777665433222110
Q ss_pred EEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCC-----CccCCceEEEEeCchhhhccccHHHHHHHHHhCCC
Q 007743 205 VGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKG-----FIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279 (591)
Q Consensus 205 ~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-----~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~ 279 (591)
.. .......-..|-.+|+........ -..-.+++||||||-++ + ...+..++..++.
T Consensus 230 -----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPP 291 (615)
T ss_pred -----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhccc
Confidence 00 000011112333333322111100 11234689999999955 3 4567778888886
Q ss_pred CCccEEEEe
Q 007743 280 KDRQTALFS 288 (591)
Q Consensus 280 ~~~q~ll~S 288 (591)
..++|++.
T Consensus 292 -~~rlIlvG 299 (615)
T PRK10875 292 -HARVIFLG 299 (615)
T ss_pred -CCEEEEec
Confidence 66777654
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.47 E-value=0.0013 Score=74.08 Aligned_cols=132 Identities=18% Similarity=0.141 Sum_probs=77.3
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
..++ .+++.|++++..+..++-+++.|+.|+|||.+. -.++..+... .....+++++||-..|..+.+.
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~----~~~~~v~l~ApTg~AA~~L~e~----- 387 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL----GGLLPVGLAAPTGRAAKRLGEV----- 387 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc----CCCceEEEEeCchHHHHHHHHh-----
Confidence 3454 699999999999999899999999999999763 2233333221 0115688899998887654322
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
++... . ...++... .|+.....-.. .....++||+|||+++.. ..+..++..++
T Consensus 388 --~g~~a---------~-Tih~lL~~------~~~~~~~~~~~----~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~ 441 (720)
T TIGR01448 388 --TGLTA---------S-TIHRLLGY------GPDTFRHNHLE----DPIDCDLLIVDESSMMDT----WLALSLLAALP 441 (720)
T ss_pred --cCCcc---------c-cHHHHhhc------cCCccchhhhh----ccccCCEEEEeccccCCH----HHHHHHHHhCC
Confidence 11110 0 00111110 01110000000 123468999999997642 35667777787
Q ss_pred CCCccEEEEe
Q 007743 279 KKDRQTALFS 288 (591)
Q Consensus 279 ~~~~q~ll~S 288 (591)
. ..+++++.
T Consensus 442 ~-~~rlilvG 450 (720)
T TIGR01448 442 D-HARLLLVG 450 (720)
T ss_pred C-CCEEEEEC
Confidence 5 67777753
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.45 E-value=0.00063 Score=59.21 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=13.0
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
++-+++.|++|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999998743
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.39 E-value=0.00087 Score=73.32 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcC-------CCeEeccCccCHHHHHHHHHHhhc--------CCccEEEEeCccccCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYIQ-------VDCFDIHGKQKQQKRTTTFFDFCK--------AEKGILLCTDVAARGL 413 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~~-------~~~~~lh~~~~~~~R~~~~~~F~~--------g~~~vLvaT~~~~~Gi 413 (591)
+..+|||+++....+.+..+.+..+ +.-..+-- -+...-..++..|.+ |..-..||--..++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 4569999999887777755554321 11111111 122333344444433 2334556677889999
Q ss_pred CCCC--CcEEEEcCCCC
Q 007743 414 DIPA--VDWIVQYDPPD 428 (591)
Q Consensus 414 Dip~--v~~VI~~~~P~ 428 (591)
|+.+ -+.||..++|.
T Consensus 640 DFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPY 656 (945)
T ss_pred CccccCCceeEEecCCC
Confidence 9976 56788888773
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.32 E-value=0.00065 Score=68.93 Aligned_cols=124 Identities=21% Similarity=0.195 Sum_probs=75.9
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCe
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT 204 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~ 204 (591)
||+-|.++|.. ....++|.|..|||||.+.+--++..+.... .+..++|++++|+..|..+.+.+...+......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 57899999988 6778999999999999986665555555432 234569999999999999999988865433110
Q ss_pred EEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHH-hcCCCCccCCceEEEEeCch
Q 007743 205 VGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHL-QNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 205 ~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l-~~~~~~~~~~l~~lVlDEah 259 (591)
. ...............+.|+|-..+...+ .......--.-.+-++|+..
T Consensus 76 ~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 S------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 0000111122233578888988775533 22211111112456777776
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.22 E-value=0.0027 Score=73.00 Aligned_cols=126 Identities=19% Similarity=0.157 Sum_probs=76.0
Q ss_pred CCCCCCcHHHHHhhccccCCCc-EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVPPLMVGKD-VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.|+ .+++-|.+++..++.+++ +++.|..|+|||.+ +-++...+.. .|..++.++||--.|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e------ 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA------AGYEVRGAALSGIAAENLEG------ 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH------cCCeEEEecCcHHHHHHHhh------
Confidence 444 699999999999998765 68999999999976 3333333322 46779999999776654321
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
..++.. .|-.+|+.-+.... ..+...++||||||-++.. ..+..++....
T Consensus 409 -~tGi~a------------------------~TI~sll~~~~~~~-~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~ 458 (988)
T PRK13889 409 -GSGIAS------------------------RTIASLEHGWGQGR-DLLTSRDVLVIDEAGMVGT----RQLERVLSHAA 458 (988)
T ss_pred -ccCcch------------------------hhHHHHHhhhcccc-cccccCcEEEEECcccCCH----HHHHHHHHhhh
Confidence 111110 11112211111111 2345668999999996643 34556666554
Q ss_pred CCCccEEEEec
Q 007743 279 KKDRQTALFSA 289 (591)
Q Consensus 279 ~~~~q~ll~SA 289 (591)
....++||+.=
T Consensus 459 ~~garvVLVGD 469 (988)
T PRK13889 459 DAGAKVVLVGD 469 (988)
T ss_pred hCCCEEEEECC
Confidence 33666776543
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0057 Score=63.31 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=71.7
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
++.+++.||||+|||.+..--+....... . ..+..+.+++ +.|.-+.++ +..++...+..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~--~-~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~---------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS--D-DKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVK---------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh--c-cCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceE----------
Confidence 45788999999999988543222211111 0 1233444444 556655543 4444444443331
Q ss_pred HHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc-cHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~-f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
++-++..+...+.. +.+.++|+||++.++.... ....+..++..........+.+|||.....
T Consensus 238 -----------~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 238 -----------AIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred -----------eeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 12244555554433 2567899999999876311 234555566555432346788999987543
Q ss_pred -HHHHHh
Q 007743 296 -EDLARL 301 (591)
Q Consensus 296 -~~l~~~ 301 (591)
.+....
T Consensus 302 ~~~~~~~ 308 (388)
T PRK12723 302 VKEIFHQ 308 (388)
T ss_pred HHHHHHH
Confidence 344443
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.18 E-value=0.005 Score=69.66 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCcHHHHHhhccccCC-CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH
Q 007743 124 FMTQIQARAVPPLMVG-KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT 190 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~ 190 (591)
.+++-|+.++..++.+ +-+++.|+.|+|||... -.+..++.. .+..+++++||--.|..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll--~~i~~~~~~-----~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML--KAAREAWEA-----AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH--HHHHHHHHh-----CCCeEEEEeCcHHHHHHH
Confidence 5899999999998875 56789999999999663 223333321 367799999997766543
No 199
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.03 E-value=0.0034 Score=55.31 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=38.2
Q ss_pred ccCccCHHHHHHHHHHhhcCC-ccEEEEeCccccCCCCCC--CcEEEEcCCCC
Q 007743 379 IHGKQKQQKRTTTFFDFCKAE-KGILLCTDVAARGLDIPA--VDWIVQYDPPD 428 (591)
Q Consensus 379 lh~~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~~GiDip~--v~~VI~~~~P~ 428 (591)
+.-+....+...+++.|.+.. ..||++|.-++.|||+|+ ++.||..++|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344455556788889998754 379999988999999997 57888888763
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.01 E-value=0.003 Score=69.90 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCc-EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKD-VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 108 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
.+.|.+.+. -+..+..-|++|+-.++..+| .++.|-+|+|||.+.... +..|+. .|.++|+.+-|-..
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~------~gkkVLLtsyThsA 725 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA------LGKKVLLTSYTHSA 725 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH------cCCeEEEEehhhHH
Confidence 344544443 344678999999999998877 578899999999875433 333332 47789999988887
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEcCcc------------------chHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 187 AIQTHAVAKDLLKYHSQTVGLVIGGSA------------------RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 187 a~q~~~~~~~~~~~~~~~~~~~~gg~~------------------~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
+..+.-.++.+. +.+. -.|... .-.......+.+.||.||--.+-+.| |..+
T Consensus 726 VDNILiKL~~~~----i~~l-RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~~R 795 (1100)
T KOG1805|consen 726 VDNILIKLKGFG----IYIL-RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FVNR 795 (1100)
T ss_pred HHHHHHHHhccC----ccee-ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hhcc
Confidence 776655554332 1111 111111 11222344556788888865554333 4456
Q ss_pred CceEEEEeCchhhhc
Q 007743 249 NLKCLVIDEADRILE 263 (591)
Q Consensus 249 ~l~~lVlDEah~l~~ 263 (591)
.+++.|+|||-.++.
T Consensus 796 ~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 796 QFDYCIIDEASQILL 810 (1100)
T ss_pred ccCEEEEcccccccc
Confidence 789999999998765
No 201
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.98 E-value=0.0028 Score=65.71 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=44.7
Q ss_pred CcHHHHHhhccc------cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH
Q 007743 125 MTQIQARAVPPL------MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT 190 (591)
Q Consensus 125 ~~~~Q~~~i~~i------l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~ 190 (591)
|++-|+.++..+ ..+..+++.|+-|+|||.. +-++...++. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~-----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS-----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc-----ccceEEEecchHHHHHhc
Confidence 677888888877 6788999999999999966 4444444432 456799999998776654
No 202
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.89 E-value=0.01 Score=59.17 Aligned_cols=64 Identities=25% Similarity=0.235 Sum_probs=48.3
Q ss_pred HCCCCCCcHHHHHhhccccCCC--cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGK--DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
-+|+......|.-|+..++.-. =|.+.++.|||||+.++.+.+...+..+ ...++||.=|+..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~----~y~KiiVtRp~vpv 288 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK----RYRKIIVTRPTVPV 288 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh----hhceEEEecCCcCc
Confidence 4688888888999999888664 3668899999999999888888776542 23456666676554
No 203
>PRK04296 thymidine kinase; Provisional
Probab=96.87 E-value=0.0019 Score=60.41 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=56.4
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC---hHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT---RELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt---reLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
.=.++.||+|+|||...+--+ ..+.. .+.+++|+.|. +....+ +....+...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~-~~~~~------~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~----------- 57 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRA-YNYEE------RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSR----------- 57 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHH------cCCeEEEEeccccccccCCc-------EecCCCCcc-----------
Confidence 346889999999997644332 23222 36678888773 222111 111111110
Q ss_pred HHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
..+.+..+..+++.+.. .-.++++|||||||.+.. +++..++..+.... ..+++++-
T Consensus 58 --------~~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g-~~vi~tgl 114 (190)
T PRK04296 58 --------EAIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLG-IPVICYGL 114 (190)
T ss_pred --------cceEeCChHHHHHHHHh----hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcC-CeEEEEec
Confidence 01123445555555544 124678999999986522 34555666644423 34444443
No 204
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.87 E-value=0.015 Score=67.42 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhhccccC-CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLMV-GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 108 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
++++..+......+ ..|++-|..++..+.. ++-++++|+.|+|||.+. -++...+.. .|..++.++||---
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~------~G~~V~g~ApTgkA 437 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA------AGYRVVGGALAGKA 437 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH------cCCeEEEEcCcHHH
Confidence 45555555544444 3699999999998764 456789999999999763 233333322 46789999999776
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc
Q 007743 187 AIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF 266 (591)
Q Consensus 187 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f 266 (591)
|..+.+ ..++... |-.+++-.+.... ..+..-.+||||||-++..
T Consensus 438 A~~L~e-------~~Gi~a~------------------------TIas~ll~~~~~~-~~l~~~~vlVIDEAsMv~~--- 482 (1102)
T PRK13826 438 AEGLEK-------EAGIQSR------------------------TLSSWELRWNQGR-DQLDNKTVFVLDEAGMVAS--- 482 (1102)
T ss_pred HHHHHH-------hhCCCee------------------------eHHHHHhhhccCc-cCCCCCcEEEEECcccCCH---
Confidence 654322 1222211 1111110011111 2345567999999996543
Q ss_pred HHHHHHHHHhCCCCCccEEEEecc
Q 007743 267 EEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 267 ~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
..+..++...+....+++++.=+
T Consensus 483 -~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 -RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -HHHHHHHHHHHhcCCEEEEECCH
Confidence 45566676665446677775533
No 205
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.011 Score=60.56 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=65.0
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc-C-ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC-P-TRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~-P-treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 215 (591)
.|..+++.||||+|||....--+....... ...++.+++ - .|.-+. +.++.++...+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G~~~V~lit~D~~R~ga~---EqL~~~a~~~gv~~---------- 197 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF-----GASKVALLTTDSYRIGGH---EQLRIFGKILGVPV---------- 197 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecccccccHH---HHHHHHHHHcCCce----------
Confidence 467899999999999988544333222221 112333333 2 232233 23444444443322
Q ss_pred HHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 216 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
..+.+++.+...+.. +.+.++|+||.+-+... ......+..+... ......++++|||....
T Consensus 198 -----------~~~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~-~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 198 -----------HAVKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGA-DTPVQRLLLLNATSHGD 260 (374)
T ss_pred -----------EecCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhcc-CCCCeEEEEecCccChH
Confidence 234455555444432 24568899999975532 1222233333221 22134577889998665
Q ss_pred H-HHHHH
Q 007743 295 V-EDLAR 300 (591)
Q Consensus 295 ~-~~l~~ 300 (591)
. .+...
T Consensus 261 ~l~evi~ 267 (374)
T PRK14722 261 TLNEVVQ 267 (374)
T ss_pred HHHHHHH
Confidence 4 33444
No 206
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.83 E-value=0.0047 Score=54.52 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCc---cEEEEeCc--cccCCCCCC--CcEEEEcCCC
Q 007743 387 KRTTTFFDFCKAEK---GILLCTDV--AARGLDIPA--VDWIVQYDPP 427 (591)
Q Consensus 387 ~R~~~~~~F~~g~~---~vLvaT~~--~~~GiDip~--v~~VI~~~~P 427 (591)
+...+++.|++... .||+++.- ++.|||+|+ ++.||..++|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 44678888887543 69999887 999999998 6788888877
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=96.71 E-value=0.023 Score=57.72 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=38.7
Q ss_pred CCceEEEEeCchhhh-ccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhh
Q 007743 248 KNLKCLVIDEADRIL-EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLS 302 (591)
Q Consensus 248 ~~l~~lVlDEah~l~-~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~ 302 (591)
...++|++|.|.++. +..+...+..+...+.+ ...+++++||........++.+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p-d~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP-DLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC-ceEEEeeccccchhHHHHHHHH
Confidence 346799999999886 35566777777766654 6678888998877665555543
No 208
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.69 E-value=0.0038 Score=60.19 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=58.8
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCc-cchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCc
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGS-ARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNL 250 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l 250 (591)
..+.+|||+..---|..+...++.+.. -+..++.++.-. ...++...+. ..++|.||||+||..++.... +.++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~-L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA-LSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC-CCcccC
Confidence 457789999886666666666665521 112344444443 3444444454 358999999999999997765 889999
Q ss_pred eEEEEeCch
Q 007743 251 KCLVIDEAD 259 (591)
Q Consensus 251 ~~lVlDEah 259 (591)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999866
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.034 Score=57.05 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=68.6
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
+.+++.||||+|||.....-+.. +.. .+.++.++. |.|.-+.+ .+..++...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~------~GkkVglI~aDt~RiaAvE---QLk~yae~lg--------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG------KKKTVGFITTDHSRIGTVQ---QLQDYVKTIG--------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH------cCCcEEEEecCCcchHHHH---HHHHHhhhcC---------------
Confidence 56889999999999875443332 221 233444443 44533322 2222222221
Q ss_pred HHHHhcCCCEE-EeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCch-h
Q 007743 218 AERIVKGVNLL-VATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTK-K 294 (591)
Q Consensus 218 ~~~l~~~~~Ii-v~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~-~ 294 (591)
+.++ +.+|..+.+.+.... ...++++|+||-+=+... ......+..++....+ ...++.+|||... .
T Consensus 297 -------ipv~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P-devlLVLsATtk~~d 366 (436)
T PRK11889 297 -------FEVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP-DYICLTLSASMKSKD 366 (436)
T ss_pred -------CcEEecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC-CeEEEEECCccChHH
Confidence 3333 446777766664321 012578999999987553 2223444555544332 3445668987654 4
Q ss_pred HHHHHHhh
Q 007743 295 VEDLARLS 302 (591)
Q Consensus 295 ~~~l~~~~ 302 (591)
+..+++.+
T Consensus 367 ~~~i~~~F 374 (436)
T PRK11889 367 MIEIITNF 374 (436)
T ss_pred HHHHHHHh
Confidence 45655543
No 210
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.63 E-value=0.0042 Score=60.65 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=59.3
Q ss_pred HHHHHhhcCCccEEEEeCccccCCCCCC--------CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeCh---hh
Q 007743 390 TTFFDFCKAEKGILLCTDVAARGLDIPA--------VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP---EE 458 (591)
Q Consensus 390 ~~~~~F~~g~~~vLvaT~~~~~GiDip~--------v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~---~e 458 (591)
...+.|.+|+..|+|.|++++.||.+.+ -++-|...+||+....+|..||+.|.+......+.++.. .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998864 245667889999999999999999987666776776654 35
Q ss_pred HHHHH
Q 007743 459 LQFLR 463 (591)
Q Consensus 459 ~~~~~ 463 (591)
..+..
T Consensus 132 ~Rfas 136 (278)
T PF13871_consen 132 RRFAS 136 (278)
T ss_pred HHHHH
Confidence 55443
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.62 E-value=0.019 Score=53.83 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=67.4
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 219 (591)
+++.||||+|||.+..--+... .. . +.++.+++ ..|.=|.+ +++.++..++..+.......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~--~~----~-~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARL--KL----K-GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTES------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH--HH----T-T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTS-------
T ss_pred EEEECCCCCchHhHHHHHHHHH--hh----c-cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcch-------
Confidence 6789999999998843222222 21 1 33344443 45655554 44455544443332211110
Q ss_pred HHhcCCCEEEeCchHH-HHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHH
Q 007743 220 RIVKGVNLLVATPGRL-LDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVED 297 (591)
Q Consensus 220 ~l~~~~~Iiv~Tp~~L-~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~ 297 (591)
.|..+ .+.+.. +..+++++|+||=+-+... ......+..++..+.. ..-.+.+|||.......
T Consensus 67 -----------~~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~-~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 -----------DPAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNP-DEVHLVLSATMGQEDLE 131 (196)
T ss_dssp -----------CHHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS-SEEEEEEEGGGGGHHHH
T ss_pred -----------hhHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC-ccceEEEecccChHHHH
Confidence 12222 223322 1124578899999876543 3445677777777754 56678899998876544
Q ss_pred HHH
Q 007743 298 LAR 300 (591)
Q Consensus 298 l~~ 300 (591)
.+.
T Consensus 132 ~~~ 134 (196)
T PF00448_consen 132 QAL 134 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.53 E-value=0.034 Score=48.71 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchHH
Q 007743 139 GKDVLGAARTGSGKTLA 155 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~ 155 (591)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999965
No 213
>PRK06526 transposase; Provisional
Probab=96.42 E-value=0.016 Score=56.68 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=19.8
Q ss_pred ccccCCCcEEEEccCCCCchHHhHH
Q 007743 134 PPLMVGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 134 ~~il~g~dvlv~a~TGsGKTl~~~l 158 (591)
..+-.+.++++.||+|+|||.....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH
Confidence 3445678999999999999977543
No 214
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.35 E-value=0.1 Score=46.84 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=23.2
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
+++.|++|+|||......+.... . .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-T------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-h------cCCEEEEEECCcch
Confidence 57899999999976543332221 1 34556666654333
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.34 E-value=0.081 Score=55.84 Aligned_cols=130 Identities=22% Similarity=0.224 Sum_probs=68.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 215 (591)
.++.+++.+|||+|||.+..--+...... ..+.++.+|. |.|.-+. +.+..++...++.+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~-----~~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~---------- 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALL-----YGKKKVALITLDTYRIGAV---EQLKTYAKIMGIPV---------- 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEECCccHHHHH---HHHHHHHHHhCCce----------
Confidence 35678899999999997754322222101 1234444444 4444332 23333333222221
Q ss_pred HHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 216 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
..+.+|..+...+.. +.+.++||||-+-+... ......+..++..........+++|||....
T Consensus 282 -----------~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 -----------EVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred -----------EccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 223455555555543 23578999999865432 2233455556552222235578889987754
Q ss_pred -HHHHHHh
Q 007743 295 -VEDLARL 301 (591)
Q Consensus 295 -~~~l~~~ 301 (591)
+..+...
T Consensus 346 ~l~~~~~~ 353 (424)
T PRK05703 346 DLKDIYKH 353 (424)
T ss_pred HHHHHHHH
Confidence 3444443
No 216
>PRK08181 transposase; Validated
Probab=96.30 E-value=0.034 Score=54.74 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=57.2
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 215 (591)
+-.++++++.||+|+|||......+ ..+.. .|..++++ +..+|..++.....
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia-~~a~~------~g~~v~f~-~~~~L~~~l~~a~~-------------------- 154 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIG-LALIE------NGWRVLFT-RTTDLVQKLQVARR-------------------- 154 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHH-HHHHH------cCCceeee-eHHHHHHHHHHHHh--------------------
Confidence 3467899999999999996544322 22222 24445444 44555544321100
Q ss_pred HHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc-HHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF-EEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 216 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f-~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
+ .+...++.. +.+.++|||||.+.+....+ ...+..|+..... ...+++.|-..+.
T Consensus 155 ----------~---~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~~s~IiTSN~~~~ 211 (269)
T PRK08181 155 ----------E---LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQPFG 211 (269)
T ss_pred ----------C---CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh-CCCEEEEcCCCHH
Confidence 0 122222222 24567999999997654222 2345566655443 3445555544433
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.28 E-value=0.047 Score=52.89 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCceEEEEeCchhhhccccHH-HHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 248 KNLKCLVIDEADRILEANFEE-EMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~-~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
.++++|||||++......|.. .+..|+...-.....+++.|---+..+
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 457899999999876544443 444566543322456676665544333
No 218
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.27 E-value=0.047 Score=50.65 Aligned_cols=48 Identities=23% Similarity=0.122 Sum_probs=31.1
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
+++.||+|+|||...+--+...+ ..+..+++++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-------~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-------ARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-------HCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999976443333332 24666887764 45566666666554
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.24 E-value=0.011 Score=51.33 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567899999999999874
No 220
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.21 E-value=0.023 Score=58.93 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=42.2
Q ss_pred CCCCCCcHHHHHhhc----cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVP----PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~----~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
+-|....|-|-.=+- .+-.+.++++.+|+|+|||.+.+--++..-... +....+.++.+-|..=.......++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~---p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY---PDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhC---CcccceEEEecCcchHHHHHHHHHH
Confidence 346667777765443 233566899999999999988654444333221 1123445555555433333333444
Q ss_pred HH
Q 007743 196 DL 197 (591)
Q Consensus 196 ~~ 197 (591)
.+
T Consensus 89 ~l 90 (755)
T KOG1131|consen 89 RL 90 (755)
T ss_pred HH
Confidence 33
No 221
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.21 E-value=0.034 Score=53.44 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=24.9
Q ss_pred ceEEEEeCchhhhcc-ccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 250 LKCLVIDEADRILEA-NFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 250 l~~lVlDEah~l~~~-~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
.++|||||+|.+... .+...+..++..+..... .+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~-~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGG-RLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCC-eEEEECCCC
Confidence 358999999987643 334556666555433233 455565543
No 222
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.17 E-value=0.034 Score=53.14 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=34.1
Q ss_pred CCceEEEEeCchhhhcc-ccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 248 KNLKCLVIDEADRILEA-NFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~-~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
...++|+||.+|.+... .+...+..++..+.....++++.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 45789999999998763 3556677777776555677877777776654
No 223
>PHA02533 17 large terminase protein; Provisional
Probab=96.10 E-value=0.045 Score=59.33 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=86.2
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|.|+|...+..+..++-.++..+=..|||.+....++..... ..+..+++++|++.-|..+++.++.+....+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-----~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-----NKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 4789999998877666666788888999998876544433322 23568999999999999999888876554321
Q ss_pred --eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC-C
Q 007743 204 --TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK-K 280 (591)
Q Consensus 204 --~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~-~ 280 (591)
....... ......+.+|..|.+.|-.. +- ..=.+..++|+||+|.+.+ +...+..+...+.. .
T Consensus 134 l~~~~i~~~----~~~~I~l~NGS~I~~lss~~--~t------~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 134 FLQPGIVEW----NKGSIELENGSKIGAYASSP--DA------VRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred Hhhcceeec----CccEEEeCCCCEEEEEeCCC--Cc------cCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 1111000 00111123455554444221 10 1112467899999997654 33344444444433 1
Q ss_pred CccEEEEecc
Q 007743 281 DRQTALFSAT 290 (591)
Q Consensus 281 ~~q~ll~SAT 290 (591)
..+++++|.+
T Consensus 200 ~~r~iiiSTp 209 (534)
T PHA02533 200 SSKIIITSTP 209 (534)
T ss_pred CceEEEEECC
Confidence 2346666655
No 224
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.09 E-value=0.32 Score=61.02 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=109.4
Q ss_pred CCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 124 FMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
.+++-|+.++..++.. +-.++.++.|+|||.+. -.+..+++ ..|..+++++||-.-+..+.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l--~~l~~~~~-----~~G~~V~~lAPTgrAA~~L~e~~g~----- 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA--QLLLHLAS-----EQGYEIQIITAGSLSAQELRQKIPR----- 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH--HHHHHHHH-----hcCCeEEEEeCCHHHHHHHHHHhcc-----
Confidence 5899999999999876 45789999999999762 23333333 2477899999998876654443211
Q ss_pred CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCC
Q 007743 202 SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281 (591)
Q Consensus 202 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~ 281 (591)
... ........+..+ .-..|...++ ... ..+..-++||||||-++.. ..+..++.......
T Consensus 497 --~A~------Ti~~~l~~l~~~--~~~~tv~~fl---~~~--~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 497 --LAS------TFITWVKNLFND--DQDHTVQGLL---DKS--SPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHN 557 (1960)
T ss_pred --hhh------hHHHHHHhhccc--ccchhHHHhh---ccc--CCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcC
Confidence 000 000001111111 1122222332 111 2345668999999996643 46677777665446
Q ss_pred ccEEEEecc--Cc----hhH-HHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHH-HHHhc-CCCcE
Q 007743 282 RQTALFSAT--QT----KKV-EDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYS-FLKRN-LSKKV 352 (591)
Q Consensus 282 ~q~ll~SAT--~~----~~~-~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~-~l~~~-~~~~~ 352 (591)
.+++|+.=+ ++ ..+ ..+.... .+...-...... ...+ .+.......+...+.. ++... ....+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~g---v~t~~l~~i~rq---~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~t 629 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGG---VTTYAWVDTKQQ---KASV--EISEAVDKLRVDYIASAWLDLTPDRQNS 629 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCC---CcEEEeeccccc---Ccce--eeeccCchHHHHHHHHHHHhcccccCce
Confidence 788876543 11 122 2233221 122221111111 1111 1222222333333333 22222 23468
Q ss_pred EEEecChhhHHHHHHHHHH
Q 007743 353 MVFFSSCNSVKFHSELLRY 371 (591)
Q Consensus 353 iVF~~s~~~~~~l~~~L~~ 371 (591)
+|+..+..+...|..+.+.
T Consensus 630 liv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 630 QVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred EEEcCCcHHHHHHHHHHHH
Confidence 9999998888887777654
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=96.07 E-value=0.02 Score=55.17 Aligned_cols=47 Identities=11% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 248 KNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
.+.++|||||+|.+.. ..+...+..++..+.....+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 3567999999998763 3344456666665544345677788876654
No 226
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.05 E-value=0.031 Score=63.91 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=93.5
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhc-----------ccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEE
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNA-----------QFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVG 206 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~-----------~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~ 206 (591)
.|+++++.-..|.|||.+-+.-.+..+-.. .........+|||+|. ++..||+..+..-+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 567889999999999998655444332110 0011122457999996 45577777666544332 4555
Q ss_pred EEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC-------------c----cC--CceEEEEeCchhhhccccH
Q 007743 207 LVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF-------------I----YK--NLKCLVIDEADRILEANFE 267 (591)
Q Consensus 207 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~-------------~----~~--~l~~lVlDEah~l~~~~f~ 267 (591)
...|-..........+-.+|||++|+..|..-+.+.... . +. .+=-|++|||+.+-. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 555532222111123345999999999997766544100 0 00 112379999996543 34
Q ss_pred HHHHHHHHhCCCCCccEEEEeccCchhHHHHHH
Q 007743 268 EEMRQIMKLLPKKDRQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 268 ~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~ 300 (591)
....+.+..++. ...-++|+|+-..+.++.-
T Consensus 529 S~~a~M~~rL~~--in~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA--INRWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred HHHHHHHHHhhh--hceeeecCCchhhhhhhHH
Confidence 566667777764 5578899997666655443
No 227
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.04 E-value=0.02 Score=65.07 Aligned_cols=71 Identities=23% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
..|++-|++++... ...++|.|..|||||.+..--+...+.... .+...+|+|+.|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 45899999999753 457999999999999885444433332221 134568999999999999988888764
No 228
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.96 E-value=0.02 Score=65.00 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
..|++-|++++... ...++|.|..|||||.+..--+...+..... ....+|+|+-|+..|.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999999754 4579999999999998854444333322221 34569999999999999998887764
No 229
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.94 E-value=0.055 Score=53.64 Aligned_cols=43 Identities=30% Similarity=0.302 Sum_probs=28.2
Q ss_pred hccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 133 VPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 133 i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
+--+..|.-+++.|++|+|||...+--+.+.... .+..+++++
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~------~g~~vl~iS 66 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLITQ------HGVRVGTIS 66 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh------cCceEEEEE
Confidence 3445677889999999999997644333332211 256677776
No 230
>PRK08727 hypothetical protein; Validated
Probab=95.93 E-value=0.04 Score=53.31 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=25.1
Q ss_pred CCceEEEEeCchhhhcc-ccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 248 KNLKCLVIDEADRILEA-NFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~-~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
.+.++|||||+|.+... .....+..++..+.....++++.|-..|.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 34578999999988642 22334445555443323344444444443
No 231
>PRK06921 hypothetical protein; Provisional
Probab=95.89 E-value=0.087 Score=51.93 Aligned_cols=45 Identities=22% Similarity=0.134 Sum_probs=26.7
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ 189 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q 189 (591)
.+..+++.|++|+|||.... .+...+... .+..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~-----~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK-----KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh-----cCceEEEEE-HHHHHHH
Confidence 35789999999999996543 233444321 145565554 3444433
No 232
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.014 Score=61.49 Aligned_cols=145 Identities=18% Similarity=0.141 Sum_probs=68.9
Q ss_pred EEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH-HHHHhhcCCeEEEEEcCccchH----HH
Q 007743 144 GAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA-KDLLKYHSQTVGLVIGGSARRG----EA 218 (591)
Q Consensus 144 v~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~-~~~~~~~~~~~~~~~gg~~~~~----~~ 218 (591)
..+.||||||++..-.|+...-. ....-|+.|..-....-....+ ..+....-..-.+.+++..... ..
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeeccc
Confidence 45889999999876656554322 1223455555433322211111 1110000001111222222111 01
Q ss_pred HHHhcCCCEEEeCchHHHHHHhcCC--CCc---cCCce-EEEEeCchhhhccc---------cHHHHHHH-HHhCC-CCC
Q 007743 219 ERIVKGVNLLVATPGRLLDHLQNTK--GFI---YKNLK-CLVIDEADRILEAN---------FEEEMRQI-MKLLP-KKD 281 (591)
Q Consensus 219 ~~l~~~~~Iiv~Tp~~L~~~l~~~~--~~~---~~~l~-~lVlDEah~l~~~~---------f~~~~~~i-~~~l~-~~~ 281 (591)
.....+..|+++|.+.|...+.+.+ ... +.+.. +++-||||++.... -...|... +..+. .++
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd 155 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKD 155 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCC
Confidence 1123457899999999976665433 122 23333 45779999987521 11122221 22222 224
Q ss_pred ccEEEEeccCchh
Q 007743 282 RQTALFSATQTKK 294 (591)
Q Consensus 282 ~q~ll~SAT~~~~ 294 (591)
.-++.||||.+.+
T Consensus 156 ~~~lef~at~~k~ 168 (812)
T COG3421 156 NLLLEFSATIPKE 168 (812)
T ss_pred ceeehhhhcCCcc
Confidence 4567799999954
No 233
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.77 E-value=0.05 Score=65.39 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=45.4
Q ss_pred CCcHHHHHhhccccCC--CcEEEEccCCCCchHHh--HHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH
Q 007743 124 FMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAF--LIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT 190 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~--~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~ 190 (591)
.+++-|++++..++.+ +-++++|..|+|||.+. ++-++..+.. ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-----~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-----SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-----ccCceEEEEechHHHHHHH
Confidence 6899999999999965 66899999999999773 2222222211 2456788899998776654
No 234
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.75 E-value=0.21 Score=51.23 Aligned_cols=130 Identities=16% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC-ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP-TRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P-treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
.++.+.+.||||.|||.+-.--+....+.. .....+||.+- .|-=|.. .++.++.-++..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~----~~~kVaiITtDtYRIGA~E---QLk~Ya~im~vp~----------- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK----KKKKVAIITTDTYRIGAVE---QLKTYADIMGVPL----------- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc----cCcceEEEEeccchhhHHH---HHHHHHHHhCCce-----------
Confidence 378899999999999988432222222111 22334555554 3444443 4444544444333
Q ss_pred HHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh-ccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~-~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
.++-+|.-|...+.. +.+.++|.+|=+-+=. +.....++..++..... -.-.+.+|||.....
T Consensus 264 ----------~vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~-i~~~Lvlsat~K~~d 327 (407)
T COG1419 264 ----------EVVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHS-IEVYLVLSATTKYED 327 (407)
T ss_pred ----------EEecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhcccc-ceEEEEEecCcchHH
Confidence 345566666655533 3556788888776422 22233455555555432 345667888876554
Q ss_pred -HHHHHh
Q 007743 296 -EDLARL 301 (591)
Q Consensus 296 -~~l~~~ 301 (591)
.++...
T Consensus 328 lkei~~~ 334 (407)
T COG1419 328 LKEIIKQ 334 (407)
T ss_pred HHHHHHH
Confidence 444443
No 235
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.088 Score=48.23 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=59.9
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 219 (591)
+=.++.+|++||||.. +|+.+.+... .+.++++..|-..- .+....+..-. |..
T Consensus 5 ~l~~i~gpM~SGKT~e----Ll~r~~~~~~---~g~~v~vfkp~iD~------------R~~~~~V~Sr~-G~~------ 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEE----LLRRARRYKE---AGMKVLVFKPAIDT------------RYGVGKVSSRI-GLS------ 58 (201)
T ss_pred EEEEEEccCcCcchHH----HHHHHHHHHH---cCCeEEEEeccccc------------ccccceeeecc-CCc------
Confidence 3457899999999986 4444444332 36778888884221 01111111111 111
Q ss_pred HHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhC
Q 007743 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277 (591)
Q Consensus 220 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l 277 (591)
..-++|-.+..+.+.+.... . ...+++|.||||+=+ +...-..+..+...+
T Consensus 59 ----~~A~~i~~~~~i~~~i~~~~-~-~~~~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 59 ----SEAVVIPSDTDIFDEIAALH-E-KPPVDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred ----ccceecCChHHHHHHHHhcc-c-CCCcCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 13466777778888886543 1 122789999999944 333344555555544
No 236
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.74 E-value=0.082 Score=56.31 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=59.9
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 219 (591)
..+++.|++|+|||... -.+.+.+... ..+.+++++.+ .++...+...+...
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~----~~~~~v~yv~~-~~f~~~~~~~l~~~---------------------- 193 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN----FSDLKVSYMSG-DEFARKAVDILQKT---------------------- 193 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh----CCCCeEEEEEH-HHHHHHHHHHHHHh----------------------
Confidence 45889999999999542 2233333321 23556666554 55555444333210
Q ss_pred HHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 220 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
. +.+..... .+.+.++|||||+|.+.. ......+..++..+.....|+++.|-..|...
T Consensus 194 ------~------~~~~~~~~-----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 194 ------H------KEIEQFKN-----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ------h------hHHHHHHH-----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 0 11111111 124577999999998764 23345666666666543556665555444333
No 237
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.73 E-value=0.065 Score=52.82 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCCchHHhHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~l 158 (591)
...++++.||+|+|||..+-+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHH
Confidence 345799999999999987543
No 238
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.72 E-value=0.072 Score=57.04 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=27.5
Q ss_pred CceEEEEeCchhhhccc-cHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 249 NLKCLVIDEADRILEAN-FEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~-f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
+.++|||||+|.+.... ....+..++..+.....++++.|...|..+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 46799999999876532 234555555555443456555444444443
No 239
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.66 E-value=0.061 Score=64.69 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=78.2
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCe
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQT 204 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~ 204 (591)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+... .+-..+|+|+=|+..|.++.+.+.......-..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~ 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG----VDIDRLLVVTFTNAAAREMKERIEEALQKALQQ 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999997 4688999999999999999665565555432 222458999999999999888887654321100
Q ss_pred EEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCc--eEEEEeCchh
Q 007743 205 VGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNL--KCLVIDEADR 260 (591)
Q Consensus 205 ~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l--~~lVlDEah~ 260 (591)
........+.+..-...-|+|-..++..+-+..... -++ .+=|.||...
T Consensus 76 ------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~-l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYL-LDLDPSFRILTDTEQ 126 (1232)
T ss_pred ------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhh-cCCCCCceeCCHHHH
Confidence 001111222233334667899988865443332111 112 4456888875
No 240
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.64 E-value=0.0046 Score=56.33 Aligned_cols=125 Identities=20% Similarity=0.207 Sum_probs=54.5
Q ss_pred EEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh
Q 007743 143 LGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV 222 (591)
Q Consensus 143 lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~ 222 (591)
++.|+-|-|||.+.-+.+...+. .....++|.+|+.+-+..+++.+..-+...+.+...... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------EEEE-SS--S-HHHHHCC----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---ccccccccc
Confidence 57899999999885554432221 123579999999999888887776554443332200000 000000111
Q ss_pred cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 223 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 223 ~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
.+..|-+..|..+... ....++||||||=.+- .+.+..++... ..++||.|...
T Consensus 72 ~~~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~~~-----~~vv~stTi~G 125 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLRRF-----PRVVFSTTIHG 125 (177)
T ss_dssp -CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCCS-----SEEEEEEEBSS
T ss_pred ccceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHhhC-----CEEEEEeeccc
Confidence 2467777888766321 1235799999999763 34555554333 34677888654
No 241
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.58 E-value=0.03 Score=54.63 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=32.7
Q ss_pred CccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 245 FIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 245 ~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
.....++++||||||.|...- ...+...+...++ ...+++...-++.-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~-~trFiLIcnylsrii 173 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSR-TTRFILICNYLSRII 173 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhcccc-ceEEEEEcCChhhCC
Confidence 345678999999999887633 3466677777655 556666665544433
No 242
>PRK05642 DNA replication initiation factor; Validated
Probab=95.57 E-value=0.071 Score=51.59 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=29.0
Q ss_pred CceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 249 NLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 249 ~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
+.++||||++|.+.. ..+...+..+++.+.....+ ++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~-ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRR-LLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCE-EEEeCCCCH
Confidence 457899999997754 34456677777776553444 556666544
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.25 Score=50.63 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCCchHHhHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp 159 (591)
.++.+++.+|||+|||....--
T Consensus 205 ~~~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999875433
No 244
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.49 E-value=0.061 Score=52.09 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=26.7
Q ss_pred ceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 250 LKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 250 l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
+++|||||+|.+.. ..+...+..++..+.......+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 46899999998864 344555666665553323324555666554
No 245
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.48 E-value=0.059 Score=58.12 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=81.9
Q ss_pred HHHHHhhcccc-----CC----CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 127 QIQARAVPPLM-----VG----KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 127 ~~Q~~~i~~il-----~g----~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
|+|+-.+-.++ .| +.+++.-+=|.|||......++-.+.-. +..+..+++++++++-|..+++.+..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~---g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD---GEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC---CccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 56766665554 12 3588889999999977554444333321 234678999999999999999999988
Q ss_pred HhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcC-CCCccCCceEEEEeCchhhhccccHHHHHHHHHh
Q 007743 198 LKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNT-KGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL 276 (591)
Q Consensus 198 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~-~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~ 276 (591)
....+...... .. ..... ..-.|.....+.++..+... ....-.+..++|+||+|.+-+......+..-...
T Consensus 78 i~~~~~l~~~~-~~-----~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 78 IEASPELRKRK-KP-----KIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HHhChhhccch-hh-----hhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 76532221100 00 00000 01223322222222222211 1122235689999999988764433444443433
Q ss_pred CCCCCccEEEEe
Q 007743 277 LPKKDRQTALFS 288 (591)
Q Consensus 277 l~~~~~q~ll~S 288 (591)
.+ +.+++.+|
T Consensus 151 r~--~pl~~~IS 160 (477)
T PF03354_consen 151 RP--NPLIIIIS 160 (477)
T ss_pred CC--CceEEEEe
Confidence 33 44555543
No 246
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.46 E-value=0.095 Score=63.95 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=45.0
Q ss_pred CCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH
Q 007743 124 FMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT 190 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~ 190 (591)
.+++.|+.++..++.+ +-++++|..|+|||... -.++..+... ....+..++.++||--.|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l--~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL--PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh--hcccCceEEEECCcHHHHHHH
Confidence 6899999999999976 45889999999999773 2222322210 112356688899998776543
No 247
>CHL00181 cbbX CbbX; Provisional
Probab=95.40 E-value=0.22 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=17.4
Q ss_pred CCCcEEEEccCCCCchHHhHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~l 158 (591)
.|.++++.||+|+|||..+..
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 456799999999999988653
No 248
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.38 E-value=0.0094 Score=65.20 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=60.8
Q ss_pred HHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhc---CCccEEEEeCccc
Q 007743 336 RFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK---AEKGILLCTDVAA 410 (591)
Q Consensus 336 k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~---g~~~vLvaT~~~~ 410 (591)
|+.+|..+++. ..+.+++||..-....+.+..++...+ ....+.|..+...|..++..|+. .+...|++|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 34444555443 346799999999999999999998888 88889999999999999999994 4567899998876
Q ss_pred cC
Q 007743 411 RG 412 (591)
Q Consensus 411 ~G 412 (591)
-|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 55
No 249
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.35 E-value=0.062 Score=60.14 Aligned_cols=74 Identities=26% Similarity=0.215 Sum_probs=53.0
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
..-..+++-|++++-.- ..+++|.|..|||||.+.+--+...+.... ..+..+|+++.|+..|..+.+.+....
T Consensus 192 ~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 192 VESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred ccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 33457999999998643 356899999999999885443333332211 234579999999999999888877653
No 250
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.30 E-value=0.082 Score=53.71 Aligned_cols=44 Identities=27% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ 189 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q 189 (591)
.+.++++.|+||+|||.... .+...+.. .+..|+++ +..+|..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~------~g~~V~y~-t~~~l~~~ 225 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD------RGKSVIYR-TADELIEI 225 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH------CCCeEEEE-EHHHHHHH
Confidence 45789999999999997543 33344443 24555554 44455443
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.26 E-value=0.11 Score=54.74 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=25.7
Q ss_pred CceEEEEeCchhhhccc-cHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 249 NLKCLVIDEADRILEAN-FEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~-f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
+.++|||||+|.+.... ....+..++..+.....++++ +++.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iii-ts~~~p 243 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVL-TSDRPP 243 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEE-ecCCCH
Confidence 35799999999876532 233455555554333455554 555443
No 252
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.25 E-value=0.17 Score=56.12 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=92.4
Q ss_pred HHHHHHCCCCCCcHHHHHhhccccCCC--cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHH
Q 007743 114 FRAIQDMGFQFMTQIQARAVPPLMVGK--DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTH 191 (591)
Q Consensus 114 ~~~l~~~~~~~~~~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~ 191 (591)
-..|.....+....-|.+.+..++.++ -+++.|.-|=|||.+.-|.+.. +.+.. ....++|.+|+.+-++.++
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~----~~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA----GSVRIIVTAPTPANVQTLF 278 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc----CCceEEEeCCCHHHHHHHH
Confidence 334555555555555555666666553 5788999999999998776632 22210 1457999999999999988
Q ss_pred HHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHH
Q 007743 192 AVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMR 271 (591)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~ 271 (591)
+.+.+-+...+............... .-.+...|=+.+|.... ..-++||+|||=.|- .+.+.
T Consensus 279 ~fa~~~l~~lg~~~~v~~d~~g~~~~--~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp----lplL~ 341 (758)
T COG1444 279 EFAGKGLEFLGYKRKVAPDALGEIRE--VSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP----LPLLH 341 (758)
T ss_pred HHHHHhHHHhCCccccccccccceee--ecCCceeEEeeCcchhc-----------ccCCEEEEehhhcCC----hHHHH
Confidence 88887776665443222111000000 00112346667775442 114689999998763 45555
Q ss_pred HHHHhCCCCCccEEEEeccCch
Q 007743 272 QIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 272 ~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
.++... +.++||.|+..
T Consensus 342 ~l~~~~-----~rv~~sTTIhG 358 (758)
T COG1444 342 KLLRRF-----PRVLFSTTIHG 358 (758)
T ss_pred HHHhhc-----CceEEEeeecc
Confidence 665543 45788888654
No 253
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.24 E-value=0.18 Score=56.59 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
..+.+|||||+|.|...+ ...+..++........+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346789999999988632 344555554332223444444333
No 254
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.23 E-value=0.046 Score=61.49 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=53.0
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.+++-|++++... ...++|.|..|||||.+..--+...+.... .+..++|+|+.|+..|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999999763 457889999999999985554444443222 2345699999999999999988877643
No 255
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.21 E-value=0.18 Score=49.84 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=29.8
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccC---C--CCCcEEEEEcCChHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA---P--RNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~---~--~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.-.++++.|+||.|||.. ++++.+.-.. . ..-+.++|-+|...-....|..+-
T Consensus 60 Rmp~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CCCceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 345899999999999974 3444332111 0 112344555676655555554443
No 256
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.15 E-value=0.27 Score=49.09 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+.++++.||+|+|||+++.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 45689999999999998753
No 257
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.13 E-value=0.42 Score=47.28 Aligned_cols=131 Identities=22% Similarity=0.322 Sum_probs=63.6
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
.+-+++.+++|+|||.+..-.+.. +.. .+.+++++. +.|.-+.+ .+..+....+..+ +..+...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~-l~~------~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~--~~~~~~~-- 137 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANK-LKK------QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDV--IKQKEGA-- 137 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHh------cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEE--EeCCCCC--
Confidence 345778899999999875433322 221 345566655 45555443 3333333333222 2111110
Q ss_pred HHHHHhcCCCEEEeCchHH-HHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCC-----CCCccEEEEec
Q 007743 217 EAERIVKGVNLLVATPGRL-LDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLP-----KKDRQTALFSA 289 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~-----~~~~q~ll~SA 289 (591)
.|..+ .+.+.. ....++++||+|=+-++.. .....++..+....+ .....++.++|
T Consensus 138 --------------dp~~~~~~~l~~---~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a 200 (272)
T TIGR00064 138 --------------DPAAVAFDAIQK---AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDA 200 (272)
T ss_pred --------------CHHHHHHHHHHH---HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEEC
Confidence 01111 111111 0123467777777765542 333445555555444 12456778888
Q ss_pred cCchhHHHHHH
Q 007743 290 TQTKKVEDLAR 300 (591)
Q Consensus 290 T~~~~~~~l~~ 300 (591)
|........+.
T Consensus 201 ~~~~~~~~~~~ 211 (272)
T TIGR00064 201 TTGQNALEQAK 211 (272)
T ss_pred CCCHHHHHHHH
Confidence 86655444333
No 258
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.10 E-value=0.16 Score=51.53 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=25.7
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
..++|||||+|.+........+..++...+. ..++++ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~-~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSK-NCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCC-CceEEE-EcC
Confidence 4579999999988443344566666766554 455554 444
No 259
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.05 E-value=0.17 Score=54.40 Aligned_cols=20 Identities=30% Similarity=0.179 Sum_probs=16.4
Q ss_pred CcEEEEccCCCCchHHhHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp 159 (591)
..+++.||.|+|||.++.+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999886543
No 260
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.12 Score=54.73 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=15.2
Q ss_pred cEEEEccCCCCchHHhHH
Q 007743 141 DVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~l 158 (591)
-+++.||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999988654
No 261
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.00 E-value=0.49 Score=46.58 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE-c-CCh-HHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI-C-PTR-ELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil-~-Ptr-eLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
.+..+++.+++|+|||..+..-+.. +.. .+..+.++ + +.| ..+.|+. .++...+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~------------ 130 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIG------------ 130 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH------cCCeEEEEecCCCCHHHHHHHH----HHhhhcC------------
Confidence 4467889999999999876543332 221 23334333 3 333 3333332 2222222
Q ss_pred hHHHHHHhcCCCEEE-eCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 215 RGEAERIVKGVNLLV-ATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 215 ~~~~~~l~~~~~Iiv-~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
+.+.. .+|..+.+.+..-. ....++++|||-+=+... ......+..++....+ ....+.+|||..
T Consensus 131 ----------~~~~~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~-~~~~LVl~a~~~ 197 (270)
T PRK06731 131 ----------FEVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP-DYICLTLSASMK 197 (270)
T ss_pred ----------ceEEecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC-CeEEEEEcCccC
Confidence 23332 35555655543211 123578999999987642 2333445555554433 344667999865
Q ss_pred h-hHHHHHHhh
Q 007743 293 K-KVEDLARLS 302 (591)
Q Consensus 293 ~-~~~~l~~~~ 302 (591)
. ...+.++.+
T Consensus 198 ~~d~~~~~~~f 208 (270)
T PRK06731 198 SKDMIEIITNF 208 (270)
T ss_pred HHHHHHHHHHh
Confidence 4 555666643
No 262
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.00 E-value=0.1 Score=55.52 Aligned_cols=89 Identities=22% Similarity=0.184 Sum_probs=57.4
Q ss_pred CHHHHHHHHHCCCCCCcHH----HHHhhcccc--CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC
Q 007743 110 SQHTFRAIQDMGFQFMTQI----QARAVPPLM--VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT 183 (591)
Q Consensus 110 ~~~l~~~l~~~~~~~~~~~----Q~~~i~~il--~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 183 (591)
++-|+..|.+.-=..|+.+ |++-=..|. .++-++|+|..|||||.+++--+.-.++..+.. ..+..+||+.|.
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-l~~k~vlvl~PN 269 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-LQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-cccCceEEEcCc
Confidence 3445667776544455432 333222223 456789999999999999765554445544322 233449999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 007743 184 RELAIQTHAVAKDLLK 199 (591)
Q Consensus 184 reLa~q~~~~~~~~~~ 199 (591)
+-++.=+..+|-+++.
T Consensus 270 ~vFleYis~VLPeLGe 285 (747)
T COG3973 270 RVFLEYISRVLPELGE 285 (747)
T ss_pred HHHHHHHHHhchhhcc
Confidence 9999888888877743
No 263
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.97 E-value=0.15 Score=54.16 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCceEEEEeCchhhhccc-cHHHHHHHHHhCCCCCccEEEEeccCchhHHH
Q 007743 248 KNLKCLVIDEADRILEAN-FEEEMRQIMKLLPKKDRQTALFSATQTKKVED 297 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~-f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~ 297 (591)
.+.++|+|||+|.+.... ....+..+++.+.....|+++.|-+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 457899999999886532 24455555554433255666655555555543
No 264
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.41 Score=49.82 Aligned_cols=127 Identities=19% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
+.-+++.+|||+|||....--+...... .+.++.++. +.|..+.+ .+..++...+.....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~------~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~--------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH------MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP--------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee---------
Confidence 3447789999999998855433322222 244454444 45665554 333333333322110
Q ss_pred HHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh-ccccHHHHHHHHHhCCC--CCccEEEEeccCch
Q 007743 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQIMKLLPK--KDRQTALFSATQTK 293 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~-~~~f~~~~~~i~~~l~~--~~~q~ll~SAT~~~ 293 (591)
+..+..+.+.+.. ...++||||=+-+.. +..-...+..++..... +...++.+|||...
T Consensus 285 ------------~~~~~~l~~~l~~------~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 285 ------------VKDIKKFKETLAR------DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred ------------hHHHHHHHHHHHh------CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 1112334444432 356789999766542 22333455555554421 13457788999887
Q ss_pred -hHHHHHHh
Q 007743 294 -KVEDLARL 301 (591)
Q Consensus 294 -~~~~l~~~ 301 (591)
.+....+.
T Consensus 347 ~~~~~~~~~ 355 (432)
T PRK12724 347 HHTLTVLKA 355 (432)
T ss_pred HHHHHHHHH
Confidence 44555443
No 265
>PRK12377 putative replication protein; Provisional
Probab=94.96 E-value=0.21 Score=48.62 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTH 191 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~ 191 (591)
...+++.|++|+|||.... .+.+.+.. .+..+ +.++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~------~g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLA------KGRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH------cCCCe-EEEEHHHHHHHHH
Confidence 3579999999999996543 23344433 24444 4445556655543
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.91 E-value=0.51 Score=43.58 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=76.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
+....+++..++|.|||.+++--++..+. .|.+|+|+-=.+--. -+.....+.. .+ .+.....|....-
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g-------~G~~V~ivQFlKg~~--~~GE~~~l~~-l~-~v~~~~~g~~~~~ 88 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG-------HGKKVGVVQFIKGAW--STGERNLLEF-GG-GVEFHVMGTGFTW 88 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH-------CCCeEEEEEEecCCC--ccCHHHHHhc-CC-CcEEEECCCCCcc
Confidence 35568999999999999997766665553 466777775332210 0011111111 11 1222222211000
Q ss_pred HHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccH--HHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFE--EEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~--~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
.. ...+--+......++..... +.-..+++||+||+-..++.++. +.+..++...|. ..-+|+..-..|++
T Consensus 89 ~~----~~~~e~~~~~~~~~~~a~~~--l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~-~~evVlTGR~~p~~ 161 (191)
T PRK05986 89 ET----QDRERDIAAAREGWEEAKRM--LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG-MQHVVITGRGAPRE 161 (191)
T ss_pred cC----CCcHHHHHHHHHHHHHHHHH--HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC-CCEEEEECCCCCHH
Confidence 00 00000000111222222221 12346899999999988887764 566667777665 55666666667777
Q ss_pred HHHHHHh
Q 007743 295 VEDLARL 301 (591)
Q Consensus 295 ~~~l~~~ 301 (591)
+.+++..
T Consensus 162 Lie~ADl 168 (191)
T PRK05986 162 LIEAADL 168 (191)
T ss_pred HHHhCch
Confidence 7666554
No 267
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.89 E-value=0.35 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.132 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCCchHHhHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~l 158 (591)
.|+-+.+.||||+|||.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 356688999999999988543
No 268
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.88 E-value=0.13 Score=58.18 Aligned_cols=70 Identities=21% Similarity=0.155 Sum_probs=51.9
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+++-|++++... ..+++|.|..|||||.+-+--+...+.... .....+|+|+.|+..|.++.+.+.+...
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 689999998653 468999999999999885544444432211 1345689999999999999888876543
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.72 Score=49.41 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=29.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHH
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp 159 (591)
+.+|+++--.+.+.+.|... +...-+ .+.+++.||.|+|||.++.+-
T Consensus 9 P~~f~dliGQe~vv~~L~~a-------~~~~ri-----~ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNA-------FTLNKI-----PQSILLVGASGVGKTTCARII 55 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHH-------HHcCCC-----CceEEEECCCCccHHHHHHHH
Confidence 35677776566666665421 111111 235899999999999876543
No 270
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.87 E-value=0.053 Score=46.87 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=13.0
Q ss_pred EEEEccCCCCchHHh
Q 007743 142 VLGAARTGSGKTLAF 156 (591)
Q Consensus 142 vlv~a~TGsGKTl~~ 156 (591)
+++.||.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999763
No 271
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.80 E-value=0.056 Score=59.13 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=73.3
Q ss_pred CCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHH-HHHHHHHhh
Q 007743 124 FMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTH-AVAKDLLKY 200 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~-~~~~~~~~~ 200 (591)
..+|+|.+.+..+-.. +.|++..++-+|||.+.+..+.-.+ . .....+|++.||.++|.... ..+..+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~-----~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-D-----QDPGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-E-----eCCCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 5689999888887654 5799999999999986433222111 1 12345899999999999865 555555554
Q ss_pred cCCeEEEEEc---CccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 201 HSQTVGLVIG---GSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 201 ~~~~~~~~~g---g~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
++..-..+.. ...........+.+..+.++.-..- ..+.-..++++++||+|.+..
T Consensus 90 sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 90 SPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred CHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC-------cccccCCcCEEEEechhhccc
Confidence 4322222222 0111111111122344444332211 112335689999999998853
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.78 E-value=0.64 Score=48.80 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=62.7
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 218 (591)
-++++|++|+|||.+..--+ ..+.. .|.++++++ |.|.-|.+ +++.++...+..+.....+.+...-
T Consensus 102 vi~lvG~~GvGKTTtaaKLA--~~l~~-----~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i- 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLA--YYYQR-----KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI- 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHHH-----CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH-
Confidence 47799999999997743222 22221 244566555 55665554 3333443344333322222111100
Q ss_pred HHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHH
Q 007743 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVED 297 (591)
Q Consensus 219 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~ 297 (591)
..+.+... ....+++||+|=+-++.. ......+..+.....+ ...+++++||......+
T Consensus 171 ----------------~~~~l~~~---~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p-~e~lLVlda~~Gq~a~~ 230 (429)
T TIGR01425 171 ----------------ASEGVEKF---KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQP-DNIIFVMDGSIGQAAEA 230 (429)
T ss_pred ----------------HHHHHHHH---HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCC-cEEEEEeccccChhHHH
Confidence 00111110 012355666666655432 2233455555544443 45567778887655555
Q ss_pred HHHhh
Q 007743 298 LARLS 302 (591)
Q Consensus 298 l~~~~ 302 (591)
.++.+
T Consensus 231 ~a~~F 235 (429)
T TIGR01425 231 QAKAF 235 (429)
T ss_pred HHHHH
Confidence 55443
No 273
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.78 E-value=0.15 Score=53.64 Aligned_cols=143 Identities=14% Similarity=0.218 Sum_probs=79.9
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH-HHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE-LAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre-La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 220 (591)
.++.|..|||||.+..+-++..+... ..+..++++-|+.. |..-++..+.......++....-...... .. .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~ 76 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-K 76 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-E
Confidence 57889999999999887777776653 13577899989877 66667777776655544321111111100 00 0
Q ss_pred Hhc-CCCEEEeCc-hHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC-CCccEEEEeccCchhHHH
Q 007743 221 IVK-GVNLLVATP-GRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK-KDRQTALFSATQTKKVED 297 (591)
Q Consensus 221 l~~-~~~Iiv~Tp-~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~-~~~q~ll~SAT~~~~~~~ 297 (591)
+.. +..|++..- ..... +. ....+.++.+|||..+... .+..++..+.. .....+++|.|+.....-
T Consensus 77 ~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 77 ILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred ecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 111 344554332 11111 11 1234689999999988543 44555444442 122247788886654333
Q ss_pred HHHh
Q 007743 298 LARL 301 (591)
Q Consensus 298 l~~~ 301 (591)
+.+.
T Consensus 147 ~~~~ 150 (396)
T TIGR01547 147 VKKR 150 (396)
T ss_pred HHHH
Confidence 4433
No 274
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=94.76 E-value=0.087 Score=54.45 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=34.9
Q ss_pred CCceE-EEEeCchhhhc---cccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 248 KNLKC-LVIDEADRILE---ANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 248 ~~l~~-lVlDEah~l~~---~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
.+-++ +.|||||.+++ ..+.+.+.++.+.++++..=+.++|-+..
T Consensus 253 dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~ 301 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPT 301 (502)
T ss_pred CCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCC
Confidence 34444 66999999886 45778899999999987888888887643
No 275
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.73 E-value=0.15 Score=63.69 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=44.8
Q ss_pred CCCcHHHHHhhccccCCC--cEEEEccCCCCchHHhH---HHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH
Q 007743 123 QFMTQIQARAVPPLMVGK--DVLGAARTGSGKTLAFL---IPAVELLYNAQFAPRNGTGVIVICPTRELAIQT 190 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~~---lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~ 190 (591)
..+++.|+.++..++.+. -++++|..|+|||.... -++.+.+ . ..+..++.++||-..|.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~-----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E-----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H-----hcCCeEEEEeChHHHHHHH
Confidence 368999999999998764 46789999999997741 2222222 2 2466788999997766554
No 276
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.082 Score=53.55 Aligned_cols=104 Identities=23% Similarity=0.318 Sum_probs=59.7
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 219 (591)
+|++.-+|+|+|||+.+- ++....++...+++||.-.+--..
T Consensus 385 RNilfyGPPGTGKTm~Ar--------------------------------------elAr~SGlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFAR--------------------------------------ELARHSGLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred hheeeeCCCCCCchHHHH--------------------------------------HHHhhcCCceehhcCCCccccchH
Confidence 589999999999997621 122334556666777654332111
Q ss_pred HHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc--------cccHHHHHHHHHhCCCCCccEEEEeccC
Q 007743 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE--------ANFEEEMRQIMKLLPKKDRQTALFSATQ 291 (591)
Q Consensus 220 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~--------~~f~~~~~~i~~~l~~~~~q~ll~SAT~ 291 (591)
. |+--..|+++-.... +.+ +|.|||||.++. ..-+..+..++-......+.++|+=||-
T Consensus 427 a--------VTkiH~lFDWakkS~----rGL-llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 427 A--------VTKIHKLFDWAKKSR----RGL-LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN 493 (630)
T ss_pred H--------HHHHHHHHHHHhhcc----cce-EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC
Confidence 1 222234455443322 112 688999998774 1223455555555444567788888885
Q ss_pred chh
Q 007743 292 TKK 294 (591)
Q Consensus 292 ~~~ 294 (591)
-+.
T Consensus 494 rpg 496 (630)
T KOG0742|consen 494 RPG 496 (630)
T ss_pred Ccc
Confidence 443
No 277
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.67 E-value=0.17 Score=48.62 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=26.0
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
..++|||||+|.+.... ...+..++.........+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 35689999999875422 334555554443323335777777554
No 278
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.67 E-value=0.083 Score=53.45 Aligned_cols=67 Identities=25% Similarity=0.285 Sum_probs=44.3
Q ss_pred HHHHHHHCCCCCCcHHHHHhhccc-cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 113 TFRAIQDMGFQFMTQIQARAVPPL-MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 113 l~~~l~~~~~~~~~~~Q~~~i~~i-l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
.+..|...|+ +++.|...+..+ ..+++++++|+||||||.. +-.++..+... ....++++|-.+.||
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~----~~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ----DPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc----CCCceEEEEcCCCcc
Confidence 4455666665 467777777654 4678999999999999954 33444433211 234567888888887
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=94.65 E-value=0.33 Score=47.65 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=19.3
Q ss_pred cccCCCcEEEEccCCCCchHHhHH
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~l 158 (591)
.+..|.++++.||+|+|||.....
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHH
Confidence 345688999999999999976543
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.62 E-value=0.67 Score=48.97 Aligned_cols=50 Identities=22% Similarity=0.340 Sum_probs=31.1
Q ss_pred eEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHh
Q 007743 251 KCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 251 ~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~ 301 (591)
++||||.+-++.. .....++..+...... ..-++.++||......+.++.
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~p-devlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKP-DEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcc-cceeEEEeccccHHHHHHHHH
Confidence 7899999965432 3334455566555544 556777888877655555544
No 281
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.54 E-value=0.17 Score=57.09 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHH----cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 333 SAKRFILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRY----IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 333 ~~~k~~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
+.+...++..++.. ..+.+++|.+||..-+.+++..++. .++.+..+||+++..+|..++....+|...|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 34444444444433 3356899999999988877776654 478999999999999999999999999999999996
Q ss_pred c-cccCCCCCCCcEEEE
Q 007743 408 V-AARGLDIPAVDWIVQ 423 (591)
Q Consensus 408 ~-~~~GiDip~v~~VI~ 423 (591)
. +...+.++++.+||.
T Consensus 373 ~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 373 ALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHhcccchhcccceEEE
Confidence 4 445678889998884
No 282
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.50 E-value=0.3 Score=54.02 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=19.8
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
...+++||||||+|....+. .+.+++..-|
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp 147 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPP 147 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCC
Confidence 46789999999998764432 3444444433
No 283
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.50 E-value=0.08 Score=55.42 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=26.0
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHhH
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~ 157 (591)
+-......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344555666777789999999999999997753
No 284
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.46 E-value=0.91 Score=49.85 Aligned_cols=150 Identities=9% Similarity=0.067 Sum_probs=82.3
Q ss_pred CcHHHHHhhcccc---CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 125 MTQIQARAVPPLM---VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 125 ~~~~Q~~~i~~il---~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+.+...+.. .+..++|.+|...-+.++++.+..+....
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 3444444444433 34567888999999998865444433221 36789999999999999999888877633
Q ss_pred CC--------eEEEEEcCccchHHH--HHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHH
Q 007743 202 SQ--------TVGLVIGGSARRGEA--ERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEM 270 (591)
Q Consensus 202 ~~--------~~~~~~gg~~~~~~~--~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~ 270 (591)
+. .+....||...-... .... .+..|..++-. .....-..+++||+|||.-+-. +.+
T Consensus 244 g~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~~s~RG~~~DLLIVDEAAfI~~----~~l 311 (752)
T PHA03333 244 QHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------PNAARGQNPDLVIVDEAAFVNP----GAL 311 (752)
T ss_pred ccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------CCCcCCCCCCEEEEECcccCCH----HHH
Confidence 20 111122221100000 0000 00122222111 1111223568999999997754 445
Q ss_pred HHHHHhCCCCCccEEEEeccCc
Q 007743 271 RQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 271 ~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
..|+-.+......++++|.+-.
T Consensus 312 ~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 312 LSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHHHHHHccCCCceEEEeCCCC
Confidence 5555555533567777787754
No 285
>PRK05973 replicative DNA helicase; Provisional
Probab=94.45 E-value=0.42 Score=46.00 Aligned_cols=84 Identities=26% Similarity=0.263 Sum_probs=49.4
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHH---------HhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcE
Q 007743 106 SLGLSQHTFRAIQDMGFQFMTQIQA---------RAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTG 176 (591)
Q Consensus 106 ~l~l~~~l~~~l~~~~~~~~~~~Q~---------~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 176 (591)
.++|+..+-+.-.+-||..-..... +...-+..|.-+++.|++|+|||...+--+.+.. ..|..
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-------~~Ge~ 94 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-------KSGRT 94 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-------hcCCe
Confidence 3455555555555666655333332 2334455677889999999999976443333332 13566
Q ss_pred EEEEcCChHHHHHHHHHHHHH
Q 007743 177 VIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 177 ~lil~PtreLa~q~~~~~~~~ 197 (591)
++|++- -+=..|+.+.+..+
T Consensus 95 vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 95 GVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred EEEEEE-eCCHHHHHHHHHHc
Confidence 777763 22245666666554
No 286
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.42 E-value=0.3 Score=55.01 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHH-cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRY-IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD 425 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 425 (591)
+.++||.++++..+.++.+.|+. .+..+..+||+++..+|...+.....|...|+|+|..+.. +.+.++.+||.-.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 67899999999999999988876 4788999999999999999999999999999999974432 5677888888544
No 287
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.40 E-value=0.3 Score=51.96 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=29.0
Q ss_pred CceEEEEeCchhhhcc-ccHHHHHHHHHhCCCCCccEEEEeccCchhHHHH
Q 007743 249 NLKCLVIDEADRILEA-NFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDL 298 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~-~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l 298 (591)
+.++|+|||+|.+.+. +....+..++..+.....++++.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 4679999999988653 2334455555554443455555554445444443
No 288
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.40 E-value=0.39 Score=53.51 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=26.2
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
..++++||||+|+|....|. .+.+++...+. .. +++|++|-+..
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~-~v-~FILaTtd~~K 161 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPP-HV-KFILATTDPQK 161 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCC-Ce-EEEEEECChhh
Confidence 45789999999998765443 44445555443 33 44444454333
No 289
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.38 E-value=0.39 Score=52.33 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=84.5
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc--CCeEEEEEcCccchH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH--SQTVGLVIGGSARRG 216 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~ 216 (591)
.+-.++..|=-.|||.... |++..++.. ..|..+++++|.+..+..+++.+...+... +..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 3557888999999998655 666555432 258889999999999999999998876532 112222222 111
Q ss_pred HHHHHhcC--CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 217 EAERIVKG--VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 217 ~~~~l~~~--~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
.-.+.+| ..|.++|- .+.....-..++++|+|||+-+.+ +.+..++-.+...+.+++++|.|-+..
T Consensus 326 -~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns~~ 393 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNTGK 393 (738)
T ss_pred -EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCCCc
Confidence 0011112 23444421 111112234689999999997765 455556555555588999999886653
No 290
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.36 E-value=0.57 Score=51.25 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCceEEEEeCchhhhcc-ccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 248 KNLKCLVIDEADRILEA-NFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~-~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
.++++||||++|.+... .....+..+++.+.....++|+.|-..+..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 45789999999988653 2345566666666554567776555555444
No 291
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.47 Score=51.39 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEE
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTAL 286 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll 286 (591)
.+++++||||||+|....| ..+.+++...|. ...+++
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~-~~~fIl 154 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPS-HVKFIL 154 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCC-CeEEEE
Confidence 4578999999998876544 344455555543 444444
No 292
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.25 E-value=0.61 Score=44.90 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=32.6
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
+..|.-+++.+++|+|||...+-.+.. +.. ++.++++++. -+-..+..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYG-FLQ------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH-HHh------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 345778999999999999774332322 222 3566788874 33334555454443
No 293
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.25 E-value=0.13 Score=52.02 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=42.0
Q ss_pred HHHHHCCCCCCcHHHHHhhcccc-CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 115 RAIQDMGFQFMTQIQARAVPPLM-VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 115 ~~l~~~~~~~~~~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
..+...|. +++.|...+..++ .+++++++|+||||||... -.++..+... ..+.+++++=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~----~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS----APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC----CCCceEEEecCCccc
Confidence 44555564 5677777665544 5679999999999999763 3333333211 134567777778787
No 294
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.75 Score=48.21 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=63.5
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC-hHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT-RELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt-reLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
.|.-+.+.||||+|||.....-+-..+... ......+|.+.+ |.-+.+ .+..++..+++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~----~~~~v~~i~~d~~rigalE---QL~~~a~ilGvp~~---------- 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH----GADKVALLTTDSYRIGGHE---QLRIYGKLLGVSVR---------- 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEecCCcchhHHH---HHHHHHHHcCCcee----------
Confidence 456688999999999988543222222211 112234555555 322222 23344443333322
Q ss_pred HHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchh-
Q 007743 217 EAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKK- 294 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~- 294 (591)
.+.++..+...+.. +.+.+++++|.+-+... ......+..+..... ....++++|||....
T Consensus 253 -----------~v~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~-~~~~~LVl~at~~~~~ 315 (420)
T PRK14721 253 -----------SIKDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGT-QVKHLLLLNATSSGDT 315 (420)
T ss_pred -----------cCCCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCC-CceEEEEEcCCCCHHH
Confidence 12233333333322 34567888888743321 112233333322222 245677899997554
Q ss_pred HHHHHHhh
Q 007743 295 VEDLARLS 302 (591)
Q Consensus 295 ~~~l~~~~ 302 (591)
+.++...+
T Consensus 316 ~~~~~~~f 323 (420)
T PRK14721 316 LDEVISAY 323 (420)
T ss_pred HHHHHHHh
Confidence 45555443
No 295
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.18 E-value=0.46 Score=48.04 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCCcHHHHHhhcccc----CCC---cEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 122 FQFMTQIQARAVPPLM----VGK---DVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 122 ~~~~~~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
++.+.|+|..++..+. .|+ -+++.||.|+||+..+.. +.+.++.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 3567899988887765 343 488999999999976543 3345544
No 296
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.36 Score=52.95 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
..++++||||+|+|....+. .+.+++..-+. ...+|+. .|-+..+
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~-~v~FILa-Ttep~kL 167 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPE-HVKFILA-TTDPQKI 167 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCC-CceEEEE-eCChHhh
Confidence 46789999999998765443 33334433332 4444444 4433333
No 297
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.13 E-value=0.79 Score=50.35 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=27.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHH
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp 159 (591)
+.+|+++--.+.+.+.|... +..-.-++-+|++||.|+|||.++-+-
T Consensus 12 P~~f~~viGq~~v~~~L~~~------------i~~~~~~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNA------------IKQGKISHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CCcHHhccCcHHHHHHHHHH------------HHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 35677775566655554322 000001234788999999999886543
No 298
>PRK08116 hypothetical protein; Validated
Probab=94.06 E-value=0.33 Score=47.98 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=26.8
Q ss_pred CCceEEEEeCchh--hhccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 248 KNLKCLVIDEADR--ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 248 ~~l~~lVlDEah~--l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
.+.++||||+++. ..++. ...+..|+.........+|+.|...+..+
T Consensus 177 ~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 177 VNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred cCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 4567999999963 22222 34455566554333456666665555444
No 299
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.99 E-value=0.84 Score=40.96 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=40.2
Q ss_pred cCCceEEEEeCchhhhcccc--HHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHh
Q 007743 247 YKNLKCLVIDEADRILEANF--EEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~~~f--~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~ 301 (591)
...+++||+||+=..+..++ .+.+..+++..|. ..-+++.+-.+|+.+.+++..
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~-~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE-DLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC-CCEEEEECCCCCHHHHHhCce
Confidence 35689999999998877665 3567777777776 667777777788877766653
No 300
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.95 E-value=0.38 Score=55.00 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=26.7
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
...+++||||+|+|....+ ..+.++++..+. ...+|+. .|-+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~-~~~fIl~-tt~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPE-HLKFIFA-TTEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCC-CeEEEEE-eCChh
Confidence 5678999999999986543 355555655554 3444443 34433
No 301
>PRK04195 replication factor C large subunit; Provisional
Probab=93.94 E-value=0.24 Score=53.58 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=27.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+.+|+++-..+...+.|...= ..++. . ...+.+++.||+|+|||...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l----~~~~~-g----~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWI----ESWLK-G----KPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHH----HHHhc-C----CCCCeEEEECCCCCCHHHHH
Confidence 355777766666665554320 00110 0 01467999999999999764
No 302
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.39 Score=49.57 Aligned_cols=41 Identities=10% Similarity=0.298 Sum_probs=24.3
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
..-+||+||+|.|.+..- ..+..|+........++.++.-+
T Consensus 123 ~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 123 KTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred CeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEe
Confidence 455899999999988543 45555554443323344444433
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.89 E-value=0.32 Score=51.76 Aligned_cols=53 Identities=30% Similarity=0.302 Sum_probs=33.2
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..|.-+++.+++|+|||...+--+... .. .+.++++++- .+-..|+...+.++
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~-a~------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARL-AA------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHH-Hh------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 346678999999999997643332222 11 3567888774 45556666555544
No 304
>PTZ00293 thymidine kinase; Provisional
Probab=93.89 E-value=0.32 Score=45.69 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT 183 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 183 (591)
|+=.++.||++||||.-.+ -.+..... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLL-r~i~~y~~------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELM-RLVKRFTY------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHH-HHHHHHHH------cCCceEEEEec
Confidence 4556889999999996532 22222221 35668888885
No 305
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.88 E-value=0.65 Score=44.64 Aligned_cols=52 Identities=27% Similarity=0.171 Sum_probs=31.2
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
..|..+++.+++|+|||...+--+.+.+. .+..+++++- .+.+.++...+..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLR-------DGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHH
Confidence 35778999999999999764433333321 2456777764 3334455444443
No 306
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.57 Score=51.54 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=25.8
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
...+++||||+|+|....+ ..+.+++...+. .. ++++.+|-+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~-~v-~FILaTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPE-HV-KFLFATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCC-Cc-EEEEEECChH
Confidence 4578999999998876543 345555555443 33 3444445433
No 307
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.83 E-value=0.3 Score=52.93 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=63.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHH-cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEc
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRY-IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQY 424 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 424 (591)
++++||.+|+..-+.++...|+. .+..+..+||+++..+|...+....+|+..|+|+|..+-. ..++++.+||.-
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 66899999999999999888875 4778999999999999999999999999999999975433 567788888853
No 308
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.78 E-value=0.65 Score=45.00 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=36.0
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.|.-+++.|++|+|||...+-.+.+.+ ..|..+++++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-------~~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-------QMGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-------HcCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 567899999999999976443343333 1366788887 4556667666666553
No 309
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.71 E-value=0.44 Score=53.12 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhc--CCCcEEEEecChhhHHHHHHHHHHc-C-CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc
Q 007743 334 AKRFILLYSFLKRN--LSKKVMVFFSSCNSVKFHSELLRYI-Q-VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA 409 (591)
Q Consensus 334 ~~k~~~l~~~l~~~--~~~~~iVF~~s~~~~~~l~~~L~~~-~-~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 409 (591)
..|......++... .++.+||.++.+..+.++...|+.. + ..+..+|++++..+|.+.+....+|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 45666666666552 3678999999999999999988764 3 678999999999999999999999999999999865
Q ss_pred ccCCCCCCCcEEEEcC
Q 007743 410 ARGLDIPAVDWIVQYD 425 (591)
Q Consensus 410 ~~GiDip~v~~VI~~~ 425 (591)
.- .-+++..+||..+
T Consensus 251 vF-aP~~~LgLIIvdE 265 (665)
T PRK14873 251 VF-APVEDLGLVAIWD 265 (665)
T ss_pred EE-eccCCCCEEEEEc
Confidence 43 6777888888644
No 310
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.71 E-value=0.24 Score=47.53 Aligned_cols=134 Identities=21% Similarity=0.158 Sum_probs=64.9
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc-----CCeEEEEEcC
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH-----SQTVGLVIGG 211 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~-----~~~~~~~~gg 211 (591)
..|.-+++.|++|+|||+-.+--+.+.+.+ .+.++++++- .+-..++.+.+..+.... ......+ ..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~-d~ 88 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKII-DA 88 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEE-ES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEE-ec
Confidence 356789999999999997644434444332 1566788773 344455555555442100 0001111 00
Q ss_pred ccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc----cccHHHHHHHHHhCCCCCccEEEE
Q 007743 212 SARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE----ANFEEEMRQIMKLLPKKDRQTALF 287 (591)
Q Consensus 212 ~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~----~~f~~~~~~i~~~l~~~~~q~ll~ 287 (591)
....... . -..+..+...+... +.-.+.+.+|||-...+.. ..++..+..+...+.. ...+.++
T Consensus 89 ~~~~~~~-------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~-~~~t~ll 156 (226)
T PF06745_consen 89 FPERIGW-------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS-RGVTTLL 156 (226)
T ss_dssp SGGGST--------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH-TTEEEEE
T ss_pred ccccccc-------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 0000000 0 11233333333221 1111237999999998722 3455566667666655 3445555
Q ss_pred ecc
Q 007743 288 SAT 290 (591)
Q Consensus 288 SAT 290 (591)
++.
T Consensus 157 t~~ 159 (226)
T PF06745_consen 157 TSE 159 (226)
T ss_dssp EEE
T ss_pred EEc
Confidence 555
No 311
>PLN03025 replication factor C subunit; Provisional
Probab=93.64 E-value=0.66 Score=47.20 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=24.6
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccC
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQ 291 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~ 291 (591)
..+++||||+|.|.... ...+..++...+. ... ++++++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~-~t~-~il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSN-TTR-FALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccC-Cce-EEEEeCC
Confidence 47899999999987533 3455555655443 333 4444443
No 312
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.63 E-value=0.42 Score=50.23 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999873
No 313
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.60 E-value=2.1 Score=46.64 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=55.1
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHcCC-------CeEeccCccCHHHHHHHHHHhh----cCCccEEEEe--CccccCC
Q 007743 347 NLSKKVMVFFSSCNSVKFHSELLRYIQV-------DCFDIHGKQKQQKRTTTFFDFC----KAEKGILLCT--DVAARGL 413 (591)
Q Consensus 347 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~lh~~~~~~~R~~~~~~F~----~g~~~vLvaT--~~~~~Gi 413 (591)
..++.+++|++|..-...+.....+.|+ .-+.+-..-+ -..++..|. .|.-.+|+|- .-++.||
T Consensus 627 ~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGI 703 (821)
T KOG1133|consen 627 AVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGI 703 (821)
T ss_pred hCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccc
Confidence 4468999999999999888888886653 2222222222 345666665 3555677765 5678999
Q ss_pred CCCC--CcEEEEcCCCC
Q 007743 414 DIPA--VDWIVQYDPPD 428 (591)
Q Consensus 414 Dip~--v~~VI~~~~P~ 428 (591)
||.+ .+.||..++|.
T Consensus 704 NF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 704 NFSDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccccEEEEeecCC
Confidence 9987 78899888874
No 314
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.22 Score=56.16 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcC-----CCeEe-ccCccCHHHHHHHHHHhhcCCccEEEEeCcc
Q 007743 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ-----VDCFD-IHGKQKQQKRTTTFFDFCKAEKGILLCTDVA 409 (591)
Q Consensus 337 ~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~-----~~~~~-lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 409 (591)
+-++..+.-...++++++.+||..-+.+.++.|..+. ..+.. ||+.|+..++..++++|.+|..+|||+|..+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3445555555567899999999998888888887653 33333 9999999999999999999999999999864
No 315
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.56 E-value=0.33 Score=54.40 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=23.3
Q ss_pred cCccCHHHHHHHHHHhhcCC-ccEEEEeCc---cccCCCCCC
Q 007743 380 HGKQKQQKRTTTFFDFCKAE-KGILLCTDV---AARGLDIPA 417 (591)
Q Consensus 380 h~~~~~~~R~~~~~~F~~g~-~~vLvaT~~---~~~GiDip~ 417 (591)
+..|.+..+..+.+.|.... .-+|+..+. -..|+|.+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~L~~h~~~~l~~~~~~~~~ 500 (767)
T PRK14723 459 LRAMAQAVRAAVRRDVAAACDRYVLALHGTLALKVAGLPGAQ 500 (767)
T ss_pred HHHHhHhHHHHHHHHHHhcccceEEEeecccccCCCCCCcch
Confidence 44566666766777777643 346777665 346666654
No 316
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.55 E-value=0.21 Score=56.99 Aligned_cols=72 Identities=22% Similarity=0.190 Sum_probs=53.8
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
..|+|-|.+++.+. ...++|.|..|||||.+..--+...+..... ....+|+++-|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999753 4679999999999998855544444332222 234689999999999999888877654
No 317
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.48 E-value=1.7 Score=43.54 Aligned_cols=131 Identities=23% Similarity=0.322 Sum_probs=76.7
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 218 (591)
-+++.+-.|+|||.+ +.=|.+.+. ..|.++++.+ -.|+-|.++.+.+ +...+..+.....|.+
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~-----~~g~~VllaA~DTFRAaAiEQL~~w---~er~gv~vI~~~~G~D----- 205 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLK-----QQGKSVLLAAGDTFRAAAIEQLEVW---GERLGVPVISGKEGAD----- 205 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHH-----HCCCeEEEEecchHHHHHHHHHHHH---HHHhCCeEEccCCCCC-----
Confidence 467899999999988 333444444 2567777766 4677776544333 3333433332111111
Q ss_pred HHHhcCCCEEEeCch-HHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCC----CccEEE-EeccC
Q 007743 219 ERIVKGVNLLVATPG-RLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKK----DRQTAL-FSATQ 291 (591)
Q Consensus 219 ~~l~~~~~Iiv~Tp~-~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~----~~q~ll-~SAT~ 291 (591)
|. -..+.++... -+++++|++|=|-||.. .+...++.+|.+.+.+. +..+++ +-||.
T Consensus 206 -------------pAaVafDAi~~Ak---ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 206 -------------PAAVAFDAIQAAK---ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred -------------cHHHHHHHHHHHH---HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 22 1233343322 35688999999998876 56667888887776552 122444 48998
Q ss_pred chhHHHHHHhh
Q 007743 292 TKKVEDLARLS 302 (591)
Q Consensus 292 ~~~~~~l~~~~ 302 (591)
..+--.-++.+
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 87765555543
No 318
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.43 E-value=0.56 Score=50.26 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=62.8
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCcc
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSA 213 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 213 (591)
+..|+.+.+.||||+|||.....-+...... ..+.++.++. +.|..+.+ .+..+....++.+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~-----~~gkkVaLIdtDtyRigA~E---QLk~ya~iLgv~v~------- 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-----HAPRDVALVTTDTQRVGGRE---QLHSYGRQLGIAVH------- 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCceEEEecccccccHHH---HHHHhhcccCceeE-------
Confidence 3456788899999999998754322222111 1123344433 34443332 23333222222111
Q ss_pred chHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 214 RRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 214 ~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
.+.++..+...+.. +.+.++||||.+-+... ......+..+.... . ...+++++++..
T Consensus 412 --------------~a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~-~a~lLVLpAtss 470 (559)
T PRK12727 412 --------------EADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-Q-VTSLLVLPANAH 470 (559)
T ss_pred --------------ecCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-c-CCcEEEEECCCC
Confidence 11234455555543 24578999999976432 11122333333222 2 345677787765
Q ss_pred h-hHHHHHH
Q 007743 293 K-KVEDLAR 300 (591)
Q Consensus 293 ~-~~~~l~~ 300 (591)
. .+..+.+
T Consensus 471 ~~Dl~eii~ 479 (559)
T PRK12727 471 FSDLDEVVR 479 (559)
T ss_pred hhHHHHHHH
Confidence 3 3344443
No 319
>PF13173 AAA_14: AAA domain
Probab=93.34 E-value=1.2 Score=38.32 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=24.5
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
.-.+|+|||+|.+. +|...+..+....+ ..++++.+
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~--~~~ii~tg 96 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGP--NIKIILTG 96 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhcc--CceEEEEc
Confidence 34689999999985 46677777777552 34555443
No 320
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.45 Score=48.34 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=25.2
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
...+++||||||.|.. +-...+...+..-+ ....+++++.-+..
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~--~~~~~il~~n~~~~ 151 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPP--KNTRFILITNDPSK 151 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCC--CCeEEEEEcCChhh
Confidence 5689999999999875 22334444444333 33444445443433
No 321
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.32 E-value=1.4 Score=40.18 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=39.1
Q ss_pred CCceEEEEeCchhhhccccH--HHHHHHHHhCCCCCccEEEEeccCchhHHHHHHh
Q 007743 248 KNLKCLVIDEADRILEANFE--EEMRQIMKLLPKKDRQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~--~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~ 301 (591)
..+++||+||+-..++.++. +.+..++...|. ..-+++..-..|+.+.+++..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~-~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPG-HQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC-CCEEEEECCCCCHHHHHhCce
Confidence 46899999999988876654 466677777765 666777777778777766653
No 322
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.31 E-value=0.37 Score=49.05 Aligned_cols=41 Identities=17% Similarity=-0.025 Sum_probs=28.4
Q ss_pred CcHHHHHhhccccCCC----cEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 125 MTQIQARAVPPLMVGK----DVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~----dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
+.|||...+..++... -+++.||.|.|||..+.. +...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 4688888887776442 478999999999976543 3344443
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.30 E-value=1.2 Score=49.02 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=28.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC---CcEEEEccCCCCchHHhHHHH
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG---KDVLGAARTGSGKTLAFLIPA 160 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g---~dvlv~a~TGsGKTl~~~lp~ 160 (591)
+.+|+++--.+.+.+.|... +..| +.+|+.||.|+|||..+.+-+
T Consensus 20 P~~f~dliGq~~~v~~L~~~---------------~~~gri~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNA---------------FETGRIAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHH---------------HHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 35677765566666555431 1223 358999999999998865433
No 324
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.65 Score=50.58 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
...+++||||+|+|....+. .+.+.+...|. ...+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~n-aLLK~LEepp~-~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFN-AMLKTLEEPPE-HVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHHH-HHHHHHhCCCC-CEEEEEEe
Confidence 46789999999988764332 34444444333 44444433
No 325
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.69 Score=47.95 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.4
Q ss_pred EEEEccCCCCchHHhHH
Q 007743 142 VLGAARTGSGKTLAFLI 158 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~l 158 (591)
+++.||.|+|||.....
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999987544
No 326
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=0.57 Score=51.38 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
...+++||||+|+|....+ ..+..++...|. ...+|+ ..|-+..
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~-~~~fIL-~tte~~k 160 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPE-HLIFIF-ATTEPEK 160 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCC-CeEEEE-EeCChHh
Confidence 5678999999999876443 234444444443 333333 3354433
No 327
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.66 Score=52.73 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
...+++||||||+|....+ ..+.+++...|. ...+|+ ..|-+..
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~-~vrFIL-aTTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPE-HVKFLL-ATTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCC-CeEEEE-ECCCchh
Confidence 4578999999999864332 344444444333 333333 3444443
No 328
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.18 E-value=0.37 Score=53.96 Aligned_cols=90 Identities=11% Similarity=0.187 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHH----cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc
Q 007743 334 AKRFILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRY----IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV 408 (591)
Q Consensus 334 ~~k~~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~ 408 (591)
.+...++..++.. ..+.+++|.+||..-+.++++.+.. .++.+..+||+++..+|..++....+|+..|+|+|..
T Consensus 268 GKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ 347 (630)
T TIGR00643 268 GKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA 347 (630)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH
Confidence 3444444443332 2356899999999988887776654 4789999999999999999999999999999999975
Q ss_pred c-ccCCCCCCCcEEEE
Q 007743 409 A-ARGLDIPAVDWIVQ 423 (591)
Q Consensus 409 ~-~~GiDip~v~~VI~ 423 (591)
. ...+.+.++.+||.
T Consensus 348 ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 348 LIQEKVEFKRLALVII 363 (630)
T ss_pred HHhccccccccceEEE
Confidence 4 34677888888873
No 329
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.15 E-value=0.24 Score=48.07 Aligned_cols=48 Identities=27% Similarity=0.275 Sum_probs=29.8
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc---CChHHHHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC---PTRELAIQ 189 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~---PtreLa~q 189 (591)
+..|.-+++.|++|+|||...+--+.+.... .+..+++++ |..+++..
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKK------QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCceEEEeCCCCHHHHHHH
Confidence 3466778999999999996543333333322 256688887 34444443
No 330
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.11 E-value=0.63 Score=49.85 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.6
Q ss_pred EEEEccCCCCchHHhHH
Q 007743 142 VLGAARTGSGKTLAFLI 158 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~l 158 (591)
+++.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999987554
No 331
>PRK10867 signal recognition particle protein; Provisional
Probab=93.09 E-value=2.2 Score=45.10 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=24.9
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAI 188 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~ 188 (591)
-+++++++|+|||.+..--+. .+.. ..+.+++++. +.|..+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~-~l~~-----~~G~kV~lV~~D~~R~aa~ 145 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK-YLKK-----KKKKKVLLVAADVYRPAAI 145 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHH-----hcCCcEEEEEccccchHHH
Confidence 477899999999987543332 2221 1144555554 5666554
No 332
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.08 E-value=0.27 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++.+++.||||+|||....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578899999999998754
No 333
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.99 E-value=0.15 Score=49.93 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=30.4
Q ss_pred ccccccCCCCHHHHHHHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQ-DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
..+|+++++++-+.+.+. ..| =++|.+|||||||.+ +..++..+.+
T Consensus 105 i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 105 IPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 356778888777666332 122 278999999999977 3445566544
No 334
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.92 E-value=0.7 Score=47.87 Aligned_cols=53 Identities=26% Similarity=0.267 Sum_probs=32.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..|.-+++.+++|+|||...+.-+ ..+.. .+.+++++.-. +-..|+...+.++
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a-~~~a~------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVA-ARLAK------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH-HHHHh------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 345678999999999997644322 22221 24568887653 3445655554443
No 335
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=1.1 Score=49.32 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=26.2
Q ss_pred cCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 247 YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
....+++||||+|+|....+ ..+..++...|. .. +++|.+|-+..
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~-~~-~fIl~t~~~~k 161 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPP-HV-KFIFATTEPHK 161 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCC-Ce-EEEEEeCChhh
Confidence 35678999999998875433 344455554443 33 33344454433
No 336
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.88 E-value=2.4 Score=44.72 Aligned_cols=18 Identities=33% Similarity=0.228 Sum_probs=14.9
Q ss_pred cEEEEccCCCCchHHhHH
Q 007743 141 DVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~l 158 (591)
-+++++++|+|||.+..-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 578999999999988543
No 337
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.83 E-value=0.85 Score=50.57 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
...+++||||+|.|....+ ..+.+++...+. ...+|+ .+|-+
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~-~v~fIL-aTtd~ 159 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPE-HVKFIL-ATTDP 159 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCC-CcEEEE-EeCCc
Confidence 4678999999998765333 344455554443 444444 43433
No 338
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.66 E-value=1.2 Score=45.95 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=62.4
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
..+.+.+-|+.|.|||+.. ..++.. .....+.+ ++.-+.+.+++..+..+. |+.+.-
T Consensus 61 ~~~GlYl~G~vG~GKT~Lm-----d~f~~~-lp~~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l-- 117 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLM-----DLFYDS-LPIKRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPL-- 117 (362)
T ss_pred CCceEEEECCCCCchhHHH-----HHHHHh-CCcccccc----ccccHHHHHHHHHHHHHh-----------CCCccH--
Confidence 4577999999999999742 222221 11111222 245567777777777653 111100
Q ss_pred HHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
+ .+.+.+ .....+|+|||.| +.|.+=.-.+..++..+-.....++..|-+.|.++
T Consensus 118 --------------~-~va~~l-------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 118 --------------P-QVADEL-------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred --------------H-HHHHHH-------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0 111222 2345689999999 33333233445556555444777888888877654
No 339
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=4.8 Score=39.56 Aligned_cols=140 Identities=20% Similarity=0.271 Sum_probs=72.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCC-----cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCc
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGK-----DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGT 175 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~-----dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~ 175 (591)
+..|++.-=-+...++|++.=+ -|+ -+|.+..|+ -+++-+|.|+||+..+ -++..- .+
T Consensus 129 NVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYLA--KAVATE--------An- 191 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSYLA--KAVATE--------AN- 191 (439)
T ss_pred CCchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHHHH--HHHHhh--------cC-
Confidence 3457766322344555554321 111 145666664 4899999999999543 222210 11
Q ss_pred EEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEE
Q 007743 176 GVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVI 255 (591)
Q Consensus 176 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVl 255 (591)
...+-+.+..|+..|.-.-.++.+ .|+.+.+.. .-++|.|
T Consensus 192 STFFSvSSSDLvSKWmGESEkLVk----------------------------------nLFemARe~------kPSIIFi 231 (439)
T KOG0739|consen 192 STFFSVSSSDLVSKWMGESEKLVK----------------------------------NLFEMAREN------KPSIIFI 231 (439)
T ss_pred CceEEeehHHHHHHHhccHHHHHH----------------------------------HHHHHHHhc------CCcEEEe
Confidence 345666666665543332222211 233333332 3468999
Q ss_pred eCchhhhcc---ccHHHHHHH----HHhC---CCCCccEEEEeccCchhHHH
Q 007743 256 DEADRILEA---NFEEEMRQI----MKLL---PKKDRQTALFSATQTKKVED 297 (591)
Q Consensus 256 DEah~l~~~---~f~~~~~~i----~~~l---~~~~~q~ll~SAT~~~~~~~ 297 (591)
||+|.|... +-.+.-++| +-.+ ....--++++.||-.+.+.+
T Consensus 232 DEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 232 DEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLD 283 (439)
T ss_pred ehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHH
Confidence 999977642 211222222 2222 22345688899998777644
No 340
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.43 E-value=2.6 Score=42.74 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=30.6
Q ss_pred CCceEEEEeCchhhhc-cccHHHHHHHHHhC----CC-CCccEEEEeccCchhHHHHHH
Q 007743 248 KNLKCLVIDEADRILE-ANFEEEMRQIMKLL----PK-KDRQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l----~~-~~~q~ll~SAT~~~~~~~l~~ 300 (591)
.++++||+|=+-++.. .....++..+...+ +. +...++.++||.....-..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~ 253 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHH
Confidence 4578888888887643 33334555555432 22 234577889997654433333
No 341
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.41 E-value=2.7 Score=41.41 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCcHHHHHhhcccc----CCC-cEEEEccCCCCchHHhH
Q 007743 124 FMTQIQARAVPPLM----VGK-DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 124 ~~~~~Q~~~i~~il----~g~-dvlv~a~TGsGKTl~~~ 157 (591)
.+++.+.+++..+. .+. .+++.||+|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666666665543 233 58899999999997643
No 342
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.40 E-value=0.93 Score=47.92 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=23.3
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
.-.+|+|||+|++.. .....++..+.. ..++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~--~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED--GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc--CcEEEEEeCCC
Confidence 346899999999864 233344555543 45666666543
No 343
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.37 E-value=0.14 Score=51.19 Aligned_cols=59 Identities=29% Similarity=0.244 Sum_probs=43.2
Q ss_pred CCCCCcHHHHHhhccccCCC-cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 121 GFQFMTQIQARAVPPLMVGK-DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 121 ~~~~~~~~Q~~~i~~il~g~-dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
.|..+++-|...+-.+..++ ++++++.||||||.. ++.|...- ....++|.+=-|.||-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i---~~~eRvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFI---DSDERVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcC---CCcccEEEEeehhhhc
Confidence 45578999999998888776 999999999999975 22222211 1234788888888883
No 344
>PF05729 NACHT: NACHT domain
Probab=92.37 E-value=0.96 Score=40.55 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=24.8
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~ 188 (591)
-+++.|+.|+|||.... -++..+......... ..+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAEEEPPPSK-FPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHhcCccccc-ceEEEEEeehhhhh
Confidence 36899999999997643 333444332211111 23445555555544
No 345
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.29 E-value=0.41 Score=48.06 Aligned_cols=68 Identities=28% Similarity=0.316 Sum_probs=42.2
Q ss_pred HHHHHHHCCCCCCcHHHHHhhcccc-CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 113 TFRAIQDMGFQFMTQIQARAVPPLM-VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 113 l~~~l~~~~~~~~~~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
.++.|.+.|. +++-|...+..++ .+++++++|+||||||... -.++..+... ....+++++-.+.|+.
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc----CCCceEEEECCchhhc
Confidence 3455555664 4555655555444 5679999999999999763 2233333210 1245678888888873
No 346
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=0.92 Score=50.05 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=15.1
Q ss_pred EEEEccCCCCchHHhHHH
Q 007743 142 VLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp 159 (591)
+++.||.|+|||.+..+-
T Consensus 41 ~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999886553
No 347
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.21 E-value=0.47 Score=44.67 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=26.1
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
-+.+++|+||||-|-+ |-...++..+....+ ..++.+.-.+
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~-ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSN-TTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcc-cchhhhhhcc
Confidence 4568999999998865 445566666665554 4444443333
No 348
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.13 E-value=0.64 Score=53.97 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH----cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC-ccccCCCCCCCcEEE
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRY----IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD-VAARGLDIPAVDWIV 422 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~-~~~~GiDip~v~~VI 422 (591)
.+.+++|.+||..-+.+.++.+.. .++.+..++|..+..++..+++.+..|+..|+|+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 357899999999999998887765 367788999999999999999999999999999996 445668888999887
Q ss_pred E
Q 007743 423 Q 423 (591)
Q Consensus 423 ~ 423 (591)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 349
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.11 E-value=0.094 Score=62.55 Aligned_cols=95 Identities=23% Similarity=0.402 Sum_probs=77.6
Q ss_pred CcEEEEecChhhHHHHHHHHHHcC-CCeEeccCccC-----------HHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 350 KKVMVFFSSCNSVKFHSELLRYIQ-VDCFDIHGKQK-----------QQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 350 ~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~lh~~~~-----------~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
-..|+|++....+..+.++++... ..+..+.|.+. +..+..++..|.....++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 456899999999988888887753 22222333322 233677888999999999999999999999999
Q ss_pred CcEEEEcCCCCChhhhhhhccccccCC
Q 007743 418 VDWIVQYDPPDEPKEYIHRVGRTARGE 444 (591)
Q Consensus 418 v~~VI~~~~P~s~~~y~qr~GR~gR~~ 444 (591)
++.|+.++.|.....|+|+.||+-+++
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999998854
No 350
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.02 E-value=0.83 Score=46.74 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
...++|||||+|.+... ....+..++...+. ...++ ++++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~-~~~~I-l~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSR-TCRFI-IATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccC-CCeEE-EEeC
Confidence 45679999999987542 23455566665554 34444 4444
No 351
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.99 E-value=1.1 Score=45.20 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++.+++.|++|+|||....
T Consensus 155 ~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999996643
No 352
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.99 E-value=0.94 Score=46.28 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=23.2
Q ss_pred eEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 251 KCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 251 ~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
-+|.|||+||+.. .+-..++-.+- +..++++.||-.
T Consensus 106 tiLflDEIHRfnK----~QQD~lLp~vE--~G~iilIGATTE 141 (436)
T COG2256 106 TILFLDEIHRFNK----AQQDALLPHVE--NGTIILIGATTE 141 (436)
T ss_pred eEEEEehhhhcCh----hhhhhhhhhhc--CCeEEEEeccCC
Confidence 3799999999864 22233444443 457888888843
No 353
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.90 E-value=1.6 Score=46.34 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=58.0
Q ss_pred hhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcC
Q 007743 132 AVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGG 211 (591)
Q Consensus 132 ~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 211 (591)
.+.-+..|.=+++.|++|+|||...+--+.+.... .+..+++++. -.-+.|+...+-. ...++....+..|
T Consensus 187 ~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~------~g~~v~~fSl-Em~~~~l~~Rl~~--~~~~v~~~~~~~~ 257 (421)
T TIGR03600 187 LTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR------EGKPVLFFSL-EMSAEQLGERLLA--SKSGINTGNIRTG 257 (421)
T ss_pred HhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEEC-CCCHHHHHHHHHH--HHcCCCHHHHhcC
Confidence 34445567778899999999996644333332212 3556777762 2223343333222 1222222222222
Q ss_pred ccchHHHHHH------hcCCCEEEeC-----chHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 212 SARRGEAERI------VKGVNLLVAT-----PGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 212 ~~~~~~~~~l------~~~~~Iiv~T-----p~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
.....++..+ ..+.++.|.. +..+...++... .....+++||||=.+.|.
T Consensus 258 ~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 258 RFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIK-RKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEecccccC
Confidence 2222222222 1234555533 233333333211 011258899999988775
No 354
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.90 E-value=0.67 Score=51.81 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=73.6
Q ss_pred cCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHH-cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 331 VPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRY-IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 331 ~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
+....|....+.++.. ..++.+||-++.+....++...|.. .+.++..+|+++++.+|...+.+..+|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 3445666777777665 3467899999999988888777765 488999999999999999999999999999999997
Q ss_pred ccccCCCCCCCcEEEE
Q 007743 408 VAARGLDIPAVDWIVQ 423 (591)
Q Consensus 408 ~~~~GiDip~v~~VI~ 423 (591)
.+- -.-+++..+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 542 255667777774
No 355
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.89 E-value=1.2 Score=40.71 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=36.9
Q ss_pred CceEEEEeCchhhhccccH--HHHHHHHHhCCCCCccEEEEeccCchhHHHHHHh
Q 007743 249 NLKCLVIDEADRILEANFE--EEMRQIMKLLPKKDRQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~--~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~ 301 (591)
.+++||+||.-..+..++. +.+..++...|. ...+|+..-..|+.+-+++.+
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~-~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPE-HTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCC-CcEEEEECCCCCHHHHHHHHH
Confidence 5899999999988887754 466666666664 455555555577777776664
No 356
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=1.4 Score=46.28 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.7
Q ss_pred cEEEEccCCCCchHHhHHH
Q 007743 141 DVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp 159 (591)
.+|+.||.|+|||.++.+-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3789999999999886543
No 357
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=1.3 Score=47.83 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=14.6
Q ss_pred EEEEccCCCCchHHhHH
Q 007743 142 VLGAARTGSGKTLAFLI 158 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~l 158 (591)
+++.||.|+|||.+..+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999988653
No 358
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.76 E-value=0.16 Score=53.20 Aligned_cols=45 Identities=33% Similarity=0.299 Sum_probs=34.1
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
++++.|+||||||.++++|-+-. ....+||+=|--++........
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---------~~~s~vv~D~Kge~~~~t~~~r 45 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---------WPGSVVVLDPKGENFELTSEHR 45 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---------CCCCEEEEccchhHHHHHHHHH
Confidence 47899999999999999987642 1345788889988876544433
No 359
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.69 E-value=0.51 Score=49.25 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=26.8
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
...+++||||+|+|.... ...+.+++..-+. ..++++.+|-+..+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~--~~~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPP--RTVWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCC--CCeEEEEECChHHC
Confidence 567899999999997533 2344445544332 34455555544443
No 360
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.69 E-value=0.78 Score=47.91 Aligned_cols=146 Identities=17% Similarity=0.157 Sum_probs=84.5
Q ss_pred HHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHH
Q 007743 113 TFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHA 192 (591)
Q Consensus 113 l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~ 192 (591)
+++.+.+ .+..+...|.++.-..-.|+- .+.+-.|||||...++-+. .|+. ..+..++++.+=|+.|+.++..
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~----knPd~~I~~Tfftk~L~s~~r~ 224 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHS----KNPDSRIAFTFFTKILASTMRT 224 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhc----CCCCceEEEEeehHHHHHHHHH
Confidence 4444432 344566778887766667766 7789999999977444332 3332 2456789999999999999999
Q ss_pred HHHHHHhhc--------CCeEEEEEcCccchHHH---HHHhcCCCEEEeCch-----HHHHHHhcCCCCccCCceEEEEe
Q 007743 193 VAKDLLKYH--------SQTVGLVIGGSARRGEA---ERIVKGVNLLVATPG-----RLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 193 ~~~~~~~~~--------~~~~~~~~gg~~~~~~~---~~l~~~~~Iiv~Tp~-----~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
.+.+++-.. ...+..-.||....... .....-..+-++--| ....++.... ...-++++.||
T Consensus 225 lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~--~~~~yD~ilID 302 (660)
T COG3972 225 LVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADIN--NKKAYDYILID 302 (660)
T ss_pred HHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhh--ccccccEEEec
Confidence 888887321 12334445665544322 222222222222111 1122222222 24568999999
Q ss_pred CchhhhccccHH
Q 007743 257 EADRILEANFEE 268 (591)
Q Consensus 257 Eah~l~~~~f~~ 268 (591)
|++-+.+ +|.+
T Consensus 303 E~QDFP~-~F~~ 313 (660)
T COG3972 303 ESQDFPQ-SFID 313 (660)
T ss_pred ccccCCH-HHHH
Confidence 9996543 3443
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.68 E-value=1.6 Score=42.83 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=25.7
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
..|.-+++.|++|+|||...+--+.+.+ ..+.++++++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a-------~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA-------SRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH-------hCCCcEEEEE
Confidence 4567789999999999976443333322 1356778877
No 362
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.67 E-value=0.32 Score=45.94 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
++++.||.|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 68999999999997644
No 363
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.62 E-value=1.4 Score=47.51 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=31.3
Q ss_pred ccccccCC-CCHHHHHHHHH--CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLG-LSQHTFRAIQD--MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~-l~~~l~~~l~~--~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|++++ +++.+...... +.+.++.-+....++. .+.+++.||+|+|||+..
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~---p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKP---PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC---CcceEEECCCCCcHHHHH
Confidence 45688886 65554333221 2333333344333332 467999999999999763
No 364
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.58 E-value=2.1 Score=38.89 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=63.3
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCcc---chHHH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSA---RRGEA 218 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~---~~~~~ 218 (591)
+.+---.|=|||.+++--++..+ ..|.+|+|+-=.+.- ..+..+..+....++.. ...|.. .....
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~-------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~--~~~g~~f~~~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA-------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEI--ERFGKGFVWRMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH-------CTT--EEEEESS--S--S--HHHHHHGGGT--EE--EE--TT----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHH-------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEE--EEcCCcccccCCCc
Confidence 34556678899999876666554 457788888654440 11122222222222222 111111 00000
Q ss_pred HHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccH--HHHHHHHHhCCCCCccEEEEeccCchhHH
Q 007743 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFE--EEMRQIMKLLPKKDRQTALFSATQTKKVE 296 (591)
Q Consensus 219 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~--~~~~~i~~~l~~~~~q~ll~SAT~~~~~~ 296 (591)
.. + .......++..... +.-..+++||+||+-..++.++. ..+..++...|. ..-+++.--.+|+.+.
T Consensus 75 ~~-----~--~~~~~~~~~~a~~~--i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~-~~evVlTGR~~~~~l~ 144 (172)
T PF02572_consen 75 EE-----D--RAAAREGLEEAKEA--ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE-SLEVVLTGRNAPEELI 144 (172)
T ss_dssp HH-----H--HHHHHHHHHHHHHH--TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T-T-EEEEE-SS--HHHH
T ss_pred HH-----H--HHHHHHHHHHHHHH--HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC-CeEEEEECCCCCHHHH
Confidence 00 0 00011222222221 22356899999999988887764 466677776665 6667776667777777
Q ss_pred HHHHh
Q 007743 297 DLARL 301 (591)
Q Consensus 297 ~l~~~ 301 (591)
+.+..
T Consensus 145 e~ADl 149 (172)
T PF02572_consen 145 EAADL 149 (172)
T ss_dssp HH-SE
T ss_pred HhCCe
Confidence 66653
No 365
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.57 E-value=0.86 Score=44.77 Aligned_cols=115 Identities=25% Similarity=0.242 Sum_probs=57.9
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC---ChHHHHHHHHHHHHHHhhcCCeEEEEEcCc
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP---TRELAIQTHAVAKDLLKYHSQTVGLVIGGS 212 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P---treLa~q~~~~~~~~~~~~~~~~~~~~gg~ 212 (591)
+..|.=+++.|+||.|||...+--+.+.... .+..+++++. ..+++..+.... .+.....+..+.
T Consensus 16 ~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~------~~~~vly~SlEm~~~~l~~R~la~~------s~v~~~~i~~g~ 83 (259)
T PF03796_consen 16 LRPGELTVIAARPGVGKTAFALQIALNAALN------GGYPVLYFSLEMSEEELAARLLARL------SGVPYNKIRSGD 83 (259)
T ss_dssp B-TT-EEEEEESTTSSHHHHHHHHHHHHHHT------TSSEEEEEESSS-HHHHHHHHHHHH------HTSTHHHHHCCG
T ss_pred CCcCcEEEEEecccCCchHHHHHHHHHHHHh------cCCeEEEEcCCCCHHHHHHHHHHHh------hcchhhhhhccc
Confidence 3445568899999999997755444444432 2467888885 233333322221 122211122222
Q ss_pred cchHHHHHH------hcCCCEE-EeCch----HHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 213 ARRGEAERI------VKGVNLL-VATPG----RLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 213 ~~~~~~~~l------~~~~~Ii-v~Tp~----~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
-...++..+ .....+. ..+|. .+...+.... .....+++||||=.|.|..
T Consensus 84 l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~-~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 84 LSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLK-REGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp CHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHH-HHSTTEEEEEEEEGGGSBT
T ss_pred cCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHH-hhccCCCEEEechHHHhcC
Confidence 222322222 1223344 34443 4444443322 1126789999999998765
No 366
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.56 E-value=1.2 Score=48.01 Aligned_cols=133 Identities=18% Similarity=0.229 Sum_probs=86.3
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH-hhcCCeEEEEEcCccchHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL-KYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~-~~~~~~~~~~~gg~~~~~~ 217 (591)
.|-.+.--|--.|||. |++|++..++.. ..|..+.+++.-|..+.-+++++..-+ ++.+.....-.
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~-------- 268 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN-------- 268 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee--------
Confidence 3456777889999995 688898888763 468899999999998888777665333 22222111100
Q ss_pred HHHHhcCCCEEEeCchHH----HHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 218 AERIVKGVNLLVATPGRL----LDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L----~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
++-.|.+.-||.= .....+.....-.++.++++||||=+. .+.+..|+-.+...+..+|..|.|-+.
T Consensus 269 -----k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Nsg 339 (668)
T PHA03372 269 -----KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNTT 339 (668)
T ss_pred -----cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCCC
Confidence 1234555555431 111122222344678999999999653 346777888887778899999988543
No 367
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.52 E-value=1.5 Score=48.54 Aligned_cols=18 Identities=33% Similarity=0.248 Sum_probs=15.1
Q ss_pred cEEEEccCCCCchHHhHH
Q 007743 141 DVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~l 158 (591)
.+|+.||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999988654
No 368
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.51 E-value=1.8 Score=46.96 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=25.0
Q ss_pred cCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 247 YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
....+++||||||+|.... ...+..++...|. ...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~-~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPS-YVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCC-ceEEEEEE
Confidence 3567899999999887533 2345555555554 44444444
No 369
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.50 E-value=0.21 Score=51.01 Aligned_cols=44 Identities=27% Similarity=0.222 Sum_probs=29.3
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
+..+++++++|+||||||... -.++..+ ....+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i-------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAI-------PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHccc-------CCCCCEEEECCCcccc
Confidence 346789999999999999752 2222222 1234577777888773
No 370
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.50 E-value=1.4 Score=45.67 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 371
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.49 E-value=0.14 Score=55.84 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=54.3
Q ss_pred HHhhcCCccEEEEeCccccCCCCCCCcEEE--------EcCCCCChhhhhhhccccccCCCCcceEEEEeCh
Q 007743 393 FDFCKAEKGILLCTDVAARGLDIPAVDWIV--------QYDPPDEPKEYIHRVGRTARGEGARGNALLFLIP 456 (591)
Q Consensus 393 ~~F~~g~~~vLvaT~~~~~GiDip~v~~VI--------~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~ 456 (591)
++|.+|+-.|-|-+.+++.||-+..-+.|+ -..+|||.+.-||..|||.|.+.-.+.-++|+..
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 479999999999999999999988755554 4789999999999999999977667777777765
No 372
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.48 E-value=0.22 Score=45.89 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=26.9
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ 189 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q 189 (591)
.+-.++++++.|++|+|||..+..- ...+.. .|..++++ ++.+|...
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai-~~~~~~------~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAI-ANEAIR------KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHH-HHHHHH------TT--EEEE-EHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHH-HHHhcc------CCcceeEe-ecCceecc
Confidence 3446789999999999999775443 333433 24555554 45555444
No 373
>PRK06904 replicative DNA helicase; Validated
Probab=91.47 E-value=2.9 Score=44.93 Aligned_cols=118 Identities=17% Similarity=0.083 Sum_probs=57.2
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcC-ccc
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGG-SAR 214 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg-~~~ 214 (591)
+..|.=+++.|.||.|||... +-+...+.. ..+..+++++. -.-..|+...+-.. ..++....+..| .-.
T Consensus 218 l~~G~LiiIaarPg~GKTafa-lnia~~~a~-----~~g~~Vl~fSl-EMs~~ql~~Rlla~--~s~v~~~~i~~g~~l~ 288 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFA-MNLCENAAM-----ASEKPVLVFSL-EMPAEQIMMRMLAS--LSRVDQTKIRTGQNLD 288 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHH-HHHHHHHHH-----hcCCeEEEEec-cCCHHHHHHHHHHh--hCCCCHHHhccCCCCC
Confidence 345556788999999999754 333332221 12455777653 23344444443322 222222222223 223
Q ss_pred hHHHHH-------HhcCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 215 RGEAER-------IVKGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 215 ~~~~~~-------l~~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
..++.. +....++.|- |+..+...++... .....+++||||=.+.|..
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 333322 2223446552 4444443333211 0112578999998887753
No 374
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.45 E-value=1.3 Score=50.27 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
..++++.||+|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999998743
No 375
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.43 E-value=0.21 Score=52.53 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=27.5
Q ss_pred cHHHHHhhccccCCCc--EEEEccCCCCchHHhHHHHHHHH
Q 007743 126 TQIQARAVPPLMVGKD--VLGAARTGSGKTLAFLIPAVELL 164 (591)
Q Consensus 126 ~~~Q~~~i~~il~g~d--vlv~a~TGsGKTl~~~lp~l~~l 164 (591)
++.|...+..++.... +++.||||||||.+ +..+++.+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 6777777777775543 67899999999977 34455554
No 376
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.41 E-value=2 Score=38.88 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=26.7
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccC
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQ 291 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~ 291 (591)
...+++|||+||.|.... ...+.+++..-|. ...++++|...
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~-~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPE-NTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTT-TEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCC-CEEEEEEECCh
Confidence 568999999999987533 4466666666664 55555555443
No 377
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.28 E-value=2.3 Score=47.10 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.7
Q ss_pred cEEEEccCCCCchHHhHHH
Q 007743 141 DVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp 159 (591)
.+|+.||.|+|||.++.+-
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999886543
No 378
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.25 E-value=1.5 Score=47.62 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=23.6
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
...+++||||||+|....+ ..+...+...|. ...+++.+
T Consensus 118 g~~kViIIDEa~~ls~~a~-naLLK~LEepp~-~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSF-NALLKTLEEPPE-YVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHH-HHHHHHHhcCCC-CceEEEEE
Confidence 4678999999999876433 344455555443 33344333
No 379
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.17 E-value=1.5 Score=49.64 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=25.1
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
...+|||||+|++.... ...++..+. ..++++++||-.+..
T Consensus 109 ~~~IL~IDEIh~Ln~~q----QdaLL~~lE--~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ----QDALLPWVE--NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHhc--CceEEEEEecCCChH
Confidence 34689999999886422 233444443 346777777755443
No 380
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.14 E-value=2.3 Score=46.55 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=27.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHH
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp 159 (591)
+.+|+++--.+.+.+.|... ++..-+ .+-+++.||.|+|||..+.+-
T Consensus 12 P~~F~dIIGQe~iv~~L~~a-------I~~~rl-----~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNA-------ILNNKL-----THAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHH-------HHcCCC-----CceEEEECCCCCCHHHHHHHH
Confidence 34566665556665555321 111111 234789999999999876543
No 381
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.08 E-value=0.52 Score=48.05 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=28.6
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
+..+++++++|+||||||... -.++..+ ....+++++=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~i-------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREI-------PAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhC-------CCCCeEEEecCCCccc
Confidence 346789999999999999752 2233332 1235666666666763
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.06 E-value=1.5 Score=47.42 Aligned_cols=52 Identities=23% Similarity=0.127 Sum_probs=35.6
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
.|.-+++.+|+|+|||+..+-.+.+.+ .+|.+++|++ +-|-..|+...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~-------~~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENAC-------ANKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-------HCCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 456799999999999976443333222 2466788877 556677777777665
No 383
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.98 E-value=0.39 Score=45.90 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=33.5
Q ss_pred CchHHHHHHhcCCCCccCCceEEEEeCchhhh-c----cccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 231 TPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-E----ANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 231 Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~-~----~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
+...+++.+.... .. -+|||||+|.+. . ..+...+..++..+.......++++++..
T Consensus 105 ~l~~~~~~l~~~~----~~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~ 166 (234)
T PF01637_consen 105 ALERLLEKLKKKG----KK-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSD 166 (234)
T ss_dssp -HHHHHHHHHHCH----CC-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSH
T ss_pred HHHHHHHHHHhcC----Cc-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCch
Confidence 3345555555432 12 589999999998 2 45666777777775544455566776653
No 384
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.95 E-value=2 Score=43.51 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=23.1
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
..++|||||+|.+.... ...+..++...+. ...+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~-~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQ-NTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCC-CCeEEEEe
Confidence 46799999999886532 3345555555443 44444433
No 385
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.92 E-value=2.2 Score=46.92 Aligned_cols=20 Identities=35% Similarity=0.210 Sum_probs=16.2
Q ss_pred cEEEEccCCCCchHHhHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPA 160 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~ 160 (591)
.+|+.+|.|+|||.++.+-+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999998866433
No 386
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.17 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 007743 137 MVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~ 157 (591)
+...|+++.+|||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 455689999999999998754
No 387
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.87 E-value=0.23 Score=53.51 Aligned_cols=47 Identities=40% Similarity=0.479 Sum_probs=35.5
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.++++.||||||||..+++|.+-. . .+ .+||.-|--||+......++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~------~~-s~iV~D~KgEl~~~t~~~r~ 91 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y------PG-SMIVTDPKGELYEKTAGYRK 91 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c------cC-CEEEEECCCcHHHHHHHHHH
Confidence 479999999999999999997632 1 22 57888899998776554444
No 388
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.68 Score=53.19 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=37.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
....|+++|....+...|+++-+..+.--+...=-.|.--+-++..+|.|+|||+..
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHH
Confidence 346799999888888888877554332222111111223466999999999999873
No 389
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.80 E-value=2 Score=47.72 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=15.7
Q ss_pred CcEEEEccCCCCchHHhHH
Q 007743 140 KDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~l 158 (591)
..+|+.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3579999999999987654
No 390
>PHA00012 I assembly protein
Probab=90.78 E-value=2.3 Score=42.48 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=31.4
Q ss_pred cCCceEEEEeCchhhhc-cccH----HHHHHHHHhCCCCCccEEEEeccCchhHHHHHH
Q 007743 247 YKNLKCLVIDEADRILE-ANFE----EEMRQIMKLLPKKDRQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~-~~f~----~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~ 300 (591)
...-.++|+||||..+. ..+. ..+...+...++...-++++|-.+. .+...++
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR 136 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAR 136 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHH
Confidence 34567999999998875 2222 3355555555554566666665533 4444443
No 391
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=2.1 Score=46.06 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=33.4
Q ss_pred CCcccccccCCCCHHHHHHHHH---CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 98 IMSTTSFDSLGLSQHTFRAIQD---MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 98 ~~~~~~f~~l~l~~~l~~~l~~---~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+..+|++.|=-..+...|.- .-+..|-.+++-.+.. -.-+++++|.|+||||.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHHH
Confidence 3456789999855555444431 2223333333333322 346999999999999763
No 392
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.67 E-value=10 Score=34.36 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=27.8
Q ss_pred CCceEEEEeCchhhh-ccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHH
Q 007743 248 KNLKCLVIDEADRIL-EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 248 ~~l~~lVlDEah~l~-~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~ 300 (591)
...+++|+|....+. +......+..+...... ...++.++|+......+.+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~-~~~~lVv~~~~~~~~~~~~~ 133 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKP-DEVLLVVDAMTGQDAVNQAK 133 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCC-CeEEEEEECCCChHHHHHHH
Confidence 346788999988653 22333444444443322 45566677765544433333
No 393
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=0.48 Score=48.01 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=32.7
Q ss_pred ccccccCCCCHHHHHHHHH--------CCCCCCc-------HHHHH-hhcc----ccCC-----CcEEEEccCCCCchHH
Q 007743 101 TTSFDSLGLSQHTFRAIQD--------MGFQFMT-------QIQAR-AVPP----LMVG-----KDVLGAARTGSGKTLA 155 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~--------~~~~~~~-------~~Q~~-~i~~----il~g-----~dvlv~a~TGsGKTl~ 155 (591)
...|+.++....|.++|.. ..+...- -++.. ++|. +.+| +-++..+|.|+|||+.
T Consensus 182 ~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 182 DKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred cCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHH
Confidence 3468888888888777763 1111111 11111 2232 2344 6799999999999975
No 394
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.62 E-value=1 Score=47.11 Aligned_cols=18 Identities=44% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
.+.+++.||+|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 357999999999999764
No 395
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.60 E-value=1.3 Score=45.58 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
...+++||||||.|.... ...+..++...+. ...++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~-~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPA-RALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCC-CceEEEEE
Confidence 467899999999986543 3345556665443 44445554
No 396
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.59 E-value=2.6 Score=43.47 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=60.4
Q ss_pred EEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH-HHH---HHHHHHhhcCCeEEEE-EcCccchHH
Q 007743 143 LGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ-THA---VAKDLLKYHSQTVGLV-IGGSARRGE 217 (591)
Q Consensus 143 lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q-~~~---~~~~~~~~~~~~~~~~-~gg~~~~~~ 217 (591)
++.++.|+|||.+..+.++..+... ..+..++++ ||..-+.. +.. .+..+... ...+... .......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~----~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR----PPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII-- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS----SS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC----CCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE--
Confidence 4678999999999877776666542 112455555 55554444 333 22222222 1111111 0000000
Q ss_pred HHHHhcCCCEEEeCchH--HHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc--h
Q 007743 218 AERIVKGVNLLVATPGR--LLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT--K 293 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~--L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~--~ 293 (591)
+.+|..|.+.+-.. -..-+.. ..+.++++||+-.+.+..+...+......... ...+++|.|.. .
T Consensus 73 ---~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 73 ---LPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG--SIRMYISTPPNPGG 141 (384)
T ss_dssp ---ETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT----EEEEEE---SSS
T ss_pred ---ecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccC--cceEEeecCCCCCC
Confidence 13455665555321 1122222 45779999999987665554444444433332 22224554432 3
Q ss_pred hHHHHHHhhCC
Q 007743 294 KVEDLARLSFQ 304 (591)
Q Consensus 294 ~~~~l~~~~~~ 304 (591)
....+......
T Consensus 142 ~~~~~~~~~~~ 152 (384)
T PF03237_consen 142 WFYEIFQRNLD 152 (384)
T ss_dssp HHHHHHHHHHC
T ss_pred ceeeeeehhhc
Confidence 33444444433
No 397
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.47 E-value=1.8 Score=44.26 Aligned_cols=40 Identities=18% Similarity=0.009 Sum_probs=25.7
Q ss_pred cHHHHHhhccccC--C---CcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 126 TQIQARAVPPLMV--G---KDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 126 ~~~Q~~~i~~il~--g---~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
.|||...+..+.. + .-+++.||.|.||+..+.. +.+.++.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 4666666655442 3 2578999999999977543 3344544
No 398
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.44 E-value=1.8 Score=44.81 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=18.0
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
-.++.||.|+||+..+.. +...++.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhC
Confidence 478999999999977543 3355554
No 399
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.40 E-value=0.47 Score=44.34 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=26.3
Q ss_pred CceEEEEeCchhhhcc-ccH----HHHHHHHHhCCCCCccEEEEeccCchhHHHHHH
Q 007743 249 NLKCLVIDEADRILEA-NFE----EEMRQIMKLLPKKDRQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~-~f~----~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~ 300 (591)
.=.++||||||..... .+. +.+...+...+....-++++|-.+ ..+....+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHH
Confidence 3468999999988762 221 233355555555455666666554 34444333
No 400
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.39 E-value=3.7 Score=43.56 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHHhhccc----cC--------CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCC
Q 007743 106 SLGLSQHTFRAIQDMGFQFMTQIQARAVPPL----MV--------GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRN 173 (591)
Q Consensus 106 ~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i----l~--------g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 173 (591)
.+|.+..-++.....|+-...+.=...+..- .+ =-.+++.+|.|||||..+.-.++. ..
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---------S~ 563 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS---------SD 563 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh---------cC
Confidence 4678888888887777766555444444321 11 125999999999999654322221 24
Q ss_pred CcEEEEEcCC
Q 007743 174 GTGVIVICPT 183 (591)
Q Consensus 174 ~~~~lil~Pt 183 (591)
-+.+=|++|-
T Consensus 564 FPFvKiiSpe 573 (744)
T KOG0741|consen 564 FPFVKIISPE 573 (744)
T ss_pred CCeEEEeChH
Confidence 5666777773
No 401
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.34 E-value=3.9 Score=39.35 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=32.0
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
.|.-+++.|++|+|||...+.-+...+ .++.+++++.=- +-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-------~~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-------KQGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-------hCCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 466789999999999976544333332 135667777643 3334555555544
No 402
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.24 E-value=3.7 Score=43.96 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=83.1
Q ss_pred CCcHHHHHhhccccC------C----CcEEEEccCCCCchHHhH-HHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMV------G----KDVLGAARTGSGKTLAFL-IPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHA 192 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~------g----~dvlv~a~TGsGKTl~~~-lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~ 192 (591)
.+-|+|+-++-.++. | +..++..|-+-|||.... |.....+... ..+....|++|+.+-+.+.++
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~----~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW----RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh----hcCCcEEEEeccHHHHHHhhH
Confidence 578999998887762 1 358899999999996644 2222233332 356778999999999999998
Q ss_pred HHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH---HHHHhc-CCCCccCCceEEEEeCchhhhccccHH
Q 007743 193 VAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL---LDHLQN-TKGFIYKNLKCLVIDEADRILEANFEE 268 (591)
Q Consensus 193 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L---~~~l~~-~~~~~~~~l~~lVlDEah~l~~~~f~~ 268 (591)
.++....... .. .....-..+-...+.+.. +..+.. .....-.+..+.|+||.|.....+ .
T Consensus 137 ~ar~mv~~~~-~l------------~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~ 201 (546)
T COG4626 137 PARDMVKRDD-DL------------RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--D 201 (546)
T ss_pred HHHHHHHhCc-ch------------hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--H
Confidence 8887755432 00 000000011111222111 111111 111233456789999999876642 4
Q ss_pred HHHHHHHhCCC-CCccEEEEec
Q 007743 269 EMRQIMKLLPK-KDRQTALFSA 289 (591)
Q Consensus 269 ~~~~i~~~l~~-~~~q~ll~SA 289 (591)
.+..+..-+.. +..+++..|.
T Consensus 202 ~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 202 MYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHhhhccCcCceEEEEec
Confidence 44444444332 2455665554
No 403
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=90.17 E-value=3.6 Score=40.45 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHHcCCCeEeccCccC
Q 007743 358 SCNSVKFHSELLRYIQVDCFDIHGKQK 384 (591)
Q Consensus 358 s~~~~~~l~~~L~~~~~~~~~lh~~~~ 384 (591)
|...++.+++.|+..+..+..-|-++.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 356789999999999999988898875
No 404
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.16 E-value=0.41 Score=52.71 Aligned_cols=56 Identities=29% Similarity=0.240 Sum_probs=41.3
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEE
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV 208 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~ 208 (591)
.++++.||||||||..+++|-+... +.-+||+=|--|+........++ .|..|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---------~~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---------EDSVVVHDIKLENYELTSGWREK----QGQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---------CCCEEEEeCcHHHHHHHHHHHHH----CCCeEEEE
Confidence 4799999999999999999987542 23478888999998766655543 34455443
No 405
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=1.1 Score=49.16 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=58.8
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
.|.-+|+.||+|.|||.. +..|++.+. + .-+-...||.....+
T Consensus 349 kGpILcLVGPPGVGKTSL-------------------------------gkSIA~al~---R---kfvR~sLGGvrDEAE 391 (782)
T COG0466 349 KGPILCLVGPPGVGKTSL-------------------------------GKSIAKALG---R---KFVRISLGGVRDEAE 391 (782)
T ss_pred CCcEEEEECCCCCCchhH-------------------------------HHHHHHHhC---C---CEEEEecCccccHHH
Confidence 455688999999999943 222222221 1 124556777766655
Q ss_pred HHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhC
Q 007743 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l 277 (591)
.+--++ .-|=+-||++.+-|...... =-++++||+|.|...-.++--..++..|
T Consensus 392 IRGHRR--TYIGamPGrIiQ~mkka~~~----NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 392 IRGHRR--TYIGAMPGKIIQGMKKAGVK----NPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred hccccc--cccccCChHHHHHHHHhCCc----CCeEEeechhhccCCCCCChHHHHHhhc
Confidence 432111 23346799999988765421 2479999999998744444444555554
No 406
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=13 Score=35.97 Aligned_cols=18 Identities=44% Similarity=0.460 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
-+-+++-+|.|+|||+|+
T Consensus 211 pkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCceEEeCCCCCchhHHH
Confidence 367999999999999985
No 407
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.90 E-value=0.19 Score=46.18 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHhcCCCEEEeCchHHHHHHhcCC--CCccCCceEEEEeCchhhhc
Q 007743 219 ERIVKGVNLLVATPGRLLDHLQNTK--GFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 219 ~~l~~~~~Iiv~Tp~~L~~~l~~~~--~~~~~~l~~lVlDEah~l~~ 263 (591)
+.....++|||++...|++-..... .+. ..-.+|||||||.|.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHH
Confidence 3445568999999998865433222 122 2346899999999876
No 408
>PRK08840 replicative DNA helicase; Provisional
Probab=89.89 E-value=4.4 Score=43.39 Aligned_cols=122 Identities=12% Similarity=0.066 Sum_probs=57.8
Q ss_pred HhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEc
Q 007743 131 RAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIG 210 (591)
Q Consensus 131 ~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~g 210 (591)
..+.-+..|.=+++.|.||.|||...+--+.+.... .+..+++++.- .-..|+...+-.. ..++....+..
T Consensus 209 ~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~ 279 (464)
T PRK08840 209 KKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLAS--LSRVDQTKIRT 279 (464)
T ss_pred HhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHHhc
Confidence 334444556667889999999997643222222211 24557776532 2234444333322 22222222222
Q ss_pred CccchHHHHH-------HhcCCCEEEe-Cc----hHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 211 GSARRGEAER-------IVKGVNLLVA-TP----GRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 211 g~~~~~~~~~-------l~~~~~Iiv~-Tp----~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
|.-...++.. +....++.|- +| ..+...++... .....+++||||=.|.|.
T Consensus 280 ~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 280 GQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 3323333333 2123445553 33 33433332211 011247899999988774
No 409
>PRK07004 replicative DNA helicase; Provisional
Probab=89.70 E-value=2.6 Score=45.09 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=55.3
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 215 (591)
+..|.=+++.|.||+|||...+--+.+.... .+..+++++. -.-..|+...+- +...++....+..|.-..
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~------~~~~v~~fSl-EM~~~ql~~R~l--a~~~~v~~~~i~~g~l~~ 280 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE------YGLPVAVFSM-EMPGTQLAMRML--GSVGRLDQHRMRTGRLTD 280 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH------cCCeEEEEeC-CCCHHHHHHHHH--HhhcCCCHHHHhcCCCCH
Confidence 4456668889999999996644322222221 2455666652 122333333322 111122222122222233
Q ss_pred HHHHHH------hcCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 216 GEAERI------VKGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 216 ~~~~~l------~~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
.++..+ .....+.|. |+..+...++... .....+++||||=.+.|.
T Consensus 281 ~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~-~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 281 EDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLA-RQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEChhhhcc
Confidence 333222 233556663 3334443332211 011247899999999775
No 410
>PRK10689 transcription-repair coupling factor; Provisional
Probab=89.69 E-value=1.3 Score=52.80 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=63.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC-ccccCCCCCCCcEEE
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD-VAARGLDIPAVDWIV 422 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~-~~~~GiDip~v~~VI 422 (591)
.+.+++|.+||..-+.+++..+... ++.+..++|..+..++..++....+|...|+|+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3678999999999999888877652 46778899999999999999999999999999996 444567778888877
Q ss_pred E
Q 007743 423 Q 423 (591)
Q Consensus 423 ~ 423 (591)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 411
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.65 E-value=2.5 Score=48.39 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=30.7
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDM---GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|++++--....+.+.++ .+..+.-++... +..++.+++.||+|+|||+..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 345788876444444444332 222222222222 234578999999999999663
No 412
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.55 E-value=1.8 Score=47.40 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=72.4
Q ss_pred CchhHHHHHHHHHHh-cCCCcEEEEecChhhH----HHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe
Q 007743 332 PSAKRFILLYSFLKR-NLSKKVMVFFSSCNSV----KFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT 406 (591)
Q Consensus 332 ~~~~k~~~l~~~l~~-~~~~~~iVF~~s~~~~----~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT 406 (591)
.+.+.+.+++.++.. ..+.++...+||.--+ ..+..+|...++.+..+.|.+....|..++....+|.+.|+|.|
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT 372 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT 372 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc
Confidence 344555555555554 3467899999996544 55556666679999999999999999999999999999999999
Q ss_pred Cc-cccCCCCCCCcEEEE
Q 007743 407 DV-AARGLDIPAVDWIVQ 423 (591)
Q Consensus 407 ~~-~~~GiDip~v~~VI~ 423 (591)
-+ +.-.+++.+.-+||.
T Consensus 373 HALiQd~V~F~~LgLVIi 390 (677)
T COG1200 373 HALIQDKVEFHNLGLVII 390 (677)
T ss_pred chhhhcceeecceeEEEE
Confidence 76 456888988888874
No 413
>PRK13764 ATPase; Provisional
Probab=89.49 E-value=0.8 Score=50.23 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELL 164 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l 164 (591)
.+++++++|+||||||... -.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999753 3344443
No 414
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.32 E-value=0.88 Score=48.75 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=27.4
Q ss_pred cCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 247 YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
..++++.||||+|+|....| ..+++.+-.++..++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~af----NALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAF----NALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHH----HHHhcccccCccCeEEEEec
Confidence 46789999999998875544 55666665545555555555
No 415
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.23 E-value=1.1 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.038 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLY 165 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~ 165 (591)
+..++++||||||||... -.++..+.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 346899999999999763 33444443
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.90 E-value=1.3 Score=49.44 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=36.7
Q ss_pred eEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 251 KCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 251 ~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
=++|||..|++.+......+..++++.|. +.+.++.|-+-|+
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~-~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPE-NLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCC-CeEEEEEeccCCC
Confidence 48999999999998888899999999998 8888888877654
No 417
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.90 E-value=2.4 Score=45.63 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=14.2
Q ss_pred EEEEccCCCCchHHhHH
Q 007743 142 VLGAARTGSGKTLAFLI 158 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~l 158 (591)
+++.||.|+|||.+..+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999987654
No 418
>PHA00729 NTP-binding motif containing protein
Probab=88.87 E-value=3 Score=39.75 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc-cccH----HHHHHHHHhCCCCCccEEEEeccCchhHHHHH
Q 007743 225 VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE-ANFE----EEMRQIMKLLPKKDRQTALFSATQTKKVEDLA 299 (591)
Q Consensus 225 ~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~----~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~ 299 (591)
...++.+...|++.+.... -.....++||||++---+. ..|. .....+...+.. ..+++.+...-+..+....
T Consensus 59 ~~~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrS-R~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRT-RVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred CcEEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHh-hCcEEEEecCCHHHHHHHH
Confidence 4556666666666664321 1123457899999432111 1111 112223333333 3456666666555555544
Q ss_pred H
Q 007743 300 R 300 (591)
Q Consensus 300 ~ 300 (591)
+
T Consensus 137 r 137 (226)
T PHA00729 137 R 137 (226)
T ss_pred H
Confidence 4
No 419
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.81 E-value=2.5 Score=46.62 Aligned_cols=143 Identities=21% Similarity=0.247 Sum_probs=75.5
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEE--------
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL-------- 207 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~-------- 207 (591)
+-.|+.+-+.+|.|||||.+ +-++++++.- ..|...|==.|.+++=.... ++....-+....+
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~P----tsG~IllDG~~i~~~~~~~l---r~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYDP----TSGRILLDGVPISDINHKYL---RRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcCC----CCCeEEECCeehhhcCHHHH---HHHeeeeeccceeecccHHHH
Confidence 44688999999999999987 4466777652 22221111236666644322 2221111111111
Q ss_pred -EEcCccchH--------------HHHHHhcCCCEEEeCchHHHHHHhcCC----CCccCCceEEEEeCchhhhccccHH
Q 007743 208 -VIGGSARRG--------------EAERIVKGVNLLVATPGRLLDHLQNTK----GFIYKNLKCLVIDEADRILEANFEE 268 (591)
Q Consensus 208 -~~gg~~~~~--------------~~~~l~~~~~Iiv~Tp~~L~~~l~~~~----~~~~~~l~~lVlDEah~l~~~~f~~ 268 (591)
.+|-.+... -...+.+|++-.|+.-|..+.-=+... .-.+++-.+||+|||---+|..-+.
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH
Confidence 122221111 111223355666666553311000000 0124556799999999999877777
Q ss_pred HHHHHHHhCCCCCccEEEEec
Q 007743 269 EMRQIMKLLPKKDRQTALFSA 289 (591)
Q Consensus 269 ~~~~i~~~l~~~~~q~ll~SA 289 (591)
.+.+.+..+.. + ++++.=|
T Consensus 642 lVq~aL~~~~~-~-rTVlvIA 660 (716)
T KOG0058|consen 642 LVQEALDRLMQ-G-RTVLVIA 660 (716)
T ss_pred HHHHHHHHhhc-C-CeEEEEe
Confidence 88888887775 4 5555544
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.71 E-value=0.47 Score=44.06 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=24.9
Q ss_pred CcHHHHHhhcccc-CCCcEEEEccCCCCchHHh
Q 007743 125 MTQIQARAVPPLM-VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 125 ~~~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~ 156 (591)
+++-|...+...+ .|..+++.+|||||||...
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 5666776666554 5788999999999999763
No 421
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.66 E-value=0.5 Score=46.23 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=33.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
++.++++.|++|+|||..+.. +.+.+.. .|.. ++++++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~------~g~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLK------AGIS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH------cCCe-EEEEEHHHHHHHHHHHH
Confidence 788999999999999977543 3333333 2444 55567778877655433
No 422
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.47 E-value=0.51 Score=51.15 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCcHHHHHhhccc----cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 007743 124 FMTQIQARAVPPL----MVGKDVLGAARTGSGKTLAFLIPAVELL 164 (591)
Q Consensus 124 ~~~~~Q~~~i~~i----l~g~dvlv~a~TGsGKTl~~~lp~l~~l 164 (591)
.|+.||...+..+ -.|+--|..+|||+||||..+=.++..|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 4888998776654 4789889999999999998665566554
No 423
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.38 E-value=2 Score=46.85 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=55.4
Q ss_pred EEEEecChhhHHHHHHHHHHc-----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC-----ccccC-CCCCCCcE
Q 007743 352 VMVFFSSCNSVKFHSELLRYI-----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD-----VAARG-LDIPAVDW 420 (591)
Q Consensus 352 ~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-iDip~v~~ 420 (591)
+||+++|++-+.++++.+... ++.++.++|+++...+...++. | ..|||||+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888754 4668899999998777655554 6 99999998 35566 88889998
Q ss_pred EEE
Q 007743 421 IVQ 423 (591)
Q Consensus 421 VI~ 423 (591)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 424
>PF12846 AAA_10: AAA-like domain
Probab=88.21 E-value=0.73 Score=46.10 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~ 188 (591)
+.++++.|+||||||.... .++..+.. .+..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH------cCCCEEEEcCCchHHH
Confidence 3578999999999997765 44444443 3566788877755544
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.20 E-value=1.9 Score=49.28 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=31.9
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDM---GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
...|++++-.+.+.+.|... .+..+.-++...+ ...+.+++.||+|+|||+..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~---~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI---RPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 45788887766776666542 2222222222221 22356899999999999764
No 426
>PRK08506 replicative DNA helicase; Provisional
Probab=88.09 E-value=4.8 Score=43.28 Aligned_cols=116 Identities=22% Similarity=0.144 Sum_probs=56.6
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 215 (591)
+..|.=+++.|+||.|||...+--+.+ +.. .+..+++++. -.-+.|+...+-.. ..++....+..|.-..
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~-~~~------~g~~V~~fSl-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~ 258 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALK-ALN------QDKGVAFFSL-EMPAEQLMLRMLSA--KTSIPLQNLRTGDLDD 258 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHH-HHh------cCCcEEEEeC-cCCHHHHHHHHHHH--hcCCCHHHHhcCCCCH
Confidence 445666888999999999664433333 222 3455666653 23344444443322 1222222222222222
Q ss_pred HHHHHH------hcCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 216 GEAERI------VKGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 216 ~~~~~l------~~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
.++..+ .....+.|- |+..+...++... .....+++||||=.+.|.
T Consensus 259 ~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~-~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 259 DEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLK-SQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEcChhhcc
Confidence 333222 123345543 3444444333211 011357899999999775
No 427
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.05 E-value=5 Score=47.19 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=32.8
Q ss_pred eEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 251 KCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 251 ~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
-+||||++|.+.+......+..++...|. ...+++.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~-~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPE-NLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCC-CeEEEEEeCCCCC
Confidence 48999999998666666678888888876 7788788877554
No 428
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.05 E-value=5.5 Score=42.42 Aligned_cols=116 Identities=20% Similarity=0.087 Sum_probs=54.7
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 215 (591)
+..|.=+++.|+||+|||...+--+.+.... .+..+++++. -.-..|+...+.... .++....+..|.-..
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~------~g~~vl~~Sl-Em~~~~i~~R~~~~~--~~v~~~~~~~g~l~~ 262 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK------EGKPVAFFSL-EMSAEQLAMRMLSSE--SRVDSQKLRTGKLSD 262 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh------CCCeEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHhccCCCCH
Confidence 4456668899999999996543223222221 2455777653 222334433333222 222222222222222
Q ss_pred HHHHHH------hcCCCEEE-eC----chHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 216 GEAERI------VKGVNLLV-AT----PGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 216 ~~~~~l------~~~~~Iiv-~T----p~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
.++..+ .....+.| .+ +..+...+.... .-..+++||||=.+.|.
T Consensus 263 ~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 263 EDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 222211 12234444 33 334443333211 11247899999988774
No 429
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.95 E-value=4 Score=44.82 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=15.2
Q ss_pred cEEEEccCCCCchHHhHH
Q 007743 141 DVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~l 158 (591)
-+++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999988654
No 430
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.95 E-value=0.67 Score=48.93 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=34.5
Q ss_pred hccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH
Q 007743 133 VPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188 (591)
Q Consensus 133 i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~ 188 (591)
+|.-...+++++.|+||||||.. +..++..+.. .+..++|+=|..++..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~------~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA------RGDRAIIYDPNGGFVS 84 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh------cCCCEEEEeCCcchhH
Confidence 45555678999999999999975 3334444433 2456888889888654
No 431
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.92 E-value=0.82 Score=47.27 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=17.6
Q ss_pred ccCCCcEEEEccCCCCchHH
Q 007743 136 LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~ 155 (591)
+-.|+-+++.||+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 44789999999999999975
No 432
>PRK10436 hypothetical protein; Provisional
Probab=87.90 E-value=0.83 Score=48.70 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=28.0
Q ss_pred HHHHCCCCCCcHHHHHhhccccC--CCcEEEEccCCCCchHHhHHHHHHHH
Q 007743 116 AIQDMGFQFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLAFLIPAVELL 164 (591)
Q Consensus 116 ~l~~~~~~~~~~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~~lp~l~~l 164 (591)
.|.++|+ .+.|.+.+..++. +.-++++||||||||... ..++..+
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3445553 4555555555443 345889999999999873 3344443
No 433
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.85 E-value=0.5 Score=45.38 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=12.8
Q ss_pred EEEEccCCCCchHH
Q 007743 142 VLGAARTGSGKTLA 155 (591)
Q Consensus 142 vlv~a~TGsGKTl~ 155 (591)
+++.++|||||+..
T Consensus 130 viiVGaTGSGKSTt 143 (375)
T COG5008 130 VIIVGATGSGKSTT 143 (375)
T ss_pred EEEECCCCCCchhh
Confidence 78999999999977
No 434
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.80 E-value=0.34 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=15.9
Q ss_pred EEEeCccccCCCCCCCcEEEEcC
Q 007743 403 LLCTDVAARGLDIPAVDWIVQYD 425 (591)
Q Consensus 403 LvaT~~~~~GiDip~v~~VI~~~ 425 (591)
-+.|---+.|+.++.|.+|+.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 35566667899998887666544
No 435
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.78 E-value=0.49 Score=48.76 Aligned_cols=18 Identities=33% Similarity=0.267 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCCchHH
Q 007743 138 VGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~ 155 (591)
.+.-++++||||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 456799999999999976
No 436
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.78 E-value=2.4 Score=47.54 Aligned_cols=18 Identities=33% Similarity=0.231 Sum_probs=15.0
Q ss_pred EEEEccCCCCchHHhHHH
Q 007743 142 VLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp 159 (591)
+|+.||.|+|||.++.+-
T Consensus 43 YLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 689999999999886543
No 437
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.76 E-value=2.5 Score=38.52 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=38.4
Q ss_pred CCceEEEEeCchhhhccccH--HHHHHHHHhCCCCCccEEEEeccCchhHHHHHH
Q 007743 248 KNLKCLVIDEADRILEANFE--EEMRQIMKLLPKKDRQTALFSATQTKKVEDLAR 300 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~--~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~ 300 (591)
..+++||+||+-..++.|+. +.+..+++..|. ..-+|+..-.+|+.+.+++.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~-~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPS-HVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCC-CCEEEEECCCCCHHHHHhCC
Confidence 46899999999988887764 566677777765 56677766777777766554
No 438
>PRK08006 replicative DNA helicase; Provisional
Probab=87.50 E-value=9.1 Score=41.11 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=56.9
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
-+..|.=+++.|.+|.|||...+--+.+.... .+..+++++.- .-..|+...+-.. ..++....+..|.-.
T Consensus 220 Gl~~G~LiiIaarPgmGKTafalnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~--~~~v~~~~i~~~~l~ 290 (471)
T PRK08006 220 GLQPSDLIIVAARPSMGKTTFAMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLAS--LSRVDQTRIRTGQLD 290 (471)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHH--hcCCCHHHhhcCCCC
Confidence 34455567889999999996544333332211 24557776532 2234444333322 122222222223223
Q ss_pred hHHHHH-------HhcCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 215 RGEAER-------IVKGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 215 ~~~~~~-------l~~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
..++.. +.....+.|- |+..+...++... .....+++||||=.+.|.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF-REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHHcc
Confidence 333332 2233455553 3444443332211 011258899999999775
No 439
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=4.6 Score=44.51 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=58.2
Q ss_pred CCcHHHHHhhcccc--------CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLM--------VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 124 ~~~~~Q~~~i~~il--------~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
-|..+-.+++..+. +|+-+++.+|+|-|||-.. ..|...+.
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-------------------------------kSIA~ALn 463 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-------------------------------KSIARALN 463 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-------------------------------HHHHHHhC
Confidence 35666666666553 5678999999999999652 11111121
Q ss_pred HHHhhcCCeEEEEEcCccchHHHHHHhcCCC-EEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 196 DLLKYHSQTVGLVIGGSARRGEAERIVKGVN-LLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 196 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~-Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
+ ++ .-..+||.....+++ ...+ -|=+-||++.+-|+.-. ..=-++.|||+|.+-.
T Consensus 464 R--kF----fRfSvGG~tDvAeIk---GHRRTYVGAMPGkiIq~LK~v~----t~NPliLiDEvDKlG~ 519 (906)
T KOG2004|consen 464 R--KF----FRFSVGGMTDVAEIK---GHRRTYVGAMPGKIIQCLKKVK----TENPLILIDEVDKLGS 519 (906)
T ss_pred C--ce----EEEeccccccHHhhc---ccceeeeccCChHHHHHHHhhC----CCCceEEeehhhhhCC
Confidence 1 11 223356655544432 2222 34477999999997654 1224799999999874
No 440
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.47 E-value=5.7 Score=44.16 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=25.9
Q ss_pred cCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 247 YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
....+++||||||.|.... ...+..++...|. .-+++|.+|-.
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~--~tifIL~tt~~ 161 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPS--YAIFILATTEK 161 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCC--CeEEEEEeCCc
Confidence 4567899999999987533 2344455555443 23444555533
No 441
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.46 E-value=0.8 Score=51.10 Aligned_cols=47 Identities=28% Similarity=0.261 Sum_probs=35.4
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.++++.||||||||..|++|-+-.. ...+||+=|--|+........+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~---------~gS~VV~DpKGE~~~~Ta~~R~ 186 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF---------KGSVIALDVKGELFELTSRARK 186 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC---------CCCEEEEeCCchHHHHHHHHHH
Confidence 4899999999999999999976431 2347788888888766554443
No 442
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.36 E-value=0.9 Score=47.53 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=33.4
Q ss_pred hccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH
Q 007743 133 VPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ 189 (591)
Q Consensus 133 i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q 189 (591)
||.-...+++++.|.||||||.+ +-+++..+.. .+.++||.=|.-+....
T Consensus 9 l~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~------~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 9 LPKDSENRHILIIGATGSGKTQA-IRHLLDQIRA------RGDRAIIYDPKGEFTER 58 (386)
T ss_dssp E-GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHH------TT-EEEEEEETTHHHHH
T ss_pred cccchhhCcEEEECCCCCCHHHH-HHHHHHHHHH------cCCEEEEEECCchHHHH
Confidence 34455678999999999999964 4566666554 26678888888776543
No 443
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.35 E-value=2.7 Score=44.92 Aligned_cols=53 Identities=26% Similarity=0.224 Sum_probs=33.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..|.-+++.+++|+|||...+--+. .+.. .+.++++++.- +-..|+...+.++
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~-~~a~------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVAC-QLAK------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH-HHHh------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 3566789999999999977543322 2221 24568888753 4456665555443
No 444
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=87.34 E-value=3.9 Score=44.42 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMG--FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|+++.-.+.....|...- +..+..++.... -..+.+++.||+|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~---~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGA---KIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC---CCCCcEEEECCCCCCHHHHH
Confidence 457888865555554443210 222333333222 12356999999999999763
No 445
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.31 E-value=6.2 Score=35.91 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=28.8
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
+++.|++|||||.-.. +.+.. .+.++++++-...+-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~----~~~~~------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAE----RLAAE------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHH----HHHHh------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 5789999999997643 22222 245688887776665555544443
No 446
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=87.29 E-value=18 Score=36.88 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=30.2
Q ss_pred eEEEEeCchhhhccccH---HHHHHHHHhCCC----CCccEEEEeccCchhHHHHHHhh
Q 007743 251 KCLVIDEADRILEANFE---EEMRQIMKLLPK----KDRQTALFSATQTKKVEDLARLS 302 (591)
Q Consensus 251 ~~lVlDEah~l~~~~f~---~~~~~i~~~l~~----~~~q~ll~SAT~~~~~~~l~~~~ 302 (591)
+++|+==+|.+...+.. ..+...+..++. ....++.+||+-...+..+....
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I 255 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAI 255 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 47888888865433322 233333433321 12568889998887777666543
No 447
>CHL00176 ftsH cell division protein; Validated
Probab=87.12 E-value=8.3 Score=43.04 Aligned_cols=18 Identities=44% Similarity=0.471 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
.+.+++.||+|+|||+..
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999764
No 448
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.11 E-value=4.6 Score=38.59 Aligned_cols=52 Identities=25% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
.|.-+++.+++|+|||...+--+...+ ..+..+++++-. +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~-------~~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL-------KNGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-------hCCCeEEEEECC-CCHHHHHHHHHHc
Confidence 466789999999999865333333332 135667777653 3456666665544
No 449
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.07 E-value=1.4 Score=48.68 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=27.2
Q ss_pred cCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 247 YKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
+++-.++|+|||-.-+|..-...+...+..+.+ .+.+++.+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~-~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhc-CCEEEEEe
Confidence 344578999999988886666667766665554 44444433
No 450
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.80 E-value=4.8 Score=46.01 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
..++++.||+|+|||...-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3589999999999998743
No 451
>PRK14701 reverse gyrase; Provisional
Probab=86.79 E-value=2.2 Score=52.61 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV 408 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~ 408 (591)
.+.++||.+||+.-+.++...|... ++.+..+||+++..++..+++.+.+|...|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3568999999999999988888763 466788999999999999999999999999999974
No 452
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=86.78 E-value=0.2 Score=36.93 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=18.3
Q ss_pred hhccccCCCcEEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.++.-..|...++.+++|||||..+
T Consensus 16 ~~~~~~~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 16 TIDFDPRGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred EEeecCCCcEEEEECCCCCCHHHHH
Confidence 3443334567999999999999763
No 453
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.78 E-value=1.3 Score=43.64 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=25.2
Q ss_pred HHHHCCCCCCcHHHHHhhccccC--CCcEEEEccCCCCchHHh
Q 007743 116 AIQDMGFQFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 116 ~l~~~~~~~~~~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~ 156 (591)
.|.++|+ .+.|.+.+..++. +.-+++.++||||||...
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 3455554 4556666655443 345889999999999763
No 454
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.70 E-value=2.2 Score=46.84 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCCchHH
Q 007743 136 LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~ 155 (591)
+-.|+-+.+.||+|||||..
T Consensus 358 i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34788899999999999965
No 455
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.63 E-value=1.5 Score=44.84 Aligned_cols=18 Identities=33% Similarity=0.194 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 478999999999997754
No 456
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=86.60 E-value=6.8 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=14.3
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
.+++.+++|||||....
T Consensus 3 ~ili~G~~~sGKS~~a~ 19 (170)
T PRK05800 3 LILVTGGARSGKSRFAE 19 (170)
T ss_pred EEEEECCCCccHHHHHH
Confidence 47899999999997644
No 457
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.59 E-value=6.8 Score=40.64 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+++.||.|+|||....
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999997643
No 458
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=86.54 E-value=4.8 Score=40.85 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=25.3
Q ss_pred cHHHHHhhcccc----CCC---cEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 126 TQIQARAVPPLM----VGK---DVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 126 ~~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
.|||...+..+. +|+ -.++.||.|.||+..+..- .+.++.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~-A~~llC 50 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRAL-AQWLMC 50 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHH-HHHHcC
Confidence 466665555443 443 4779999999999775433 344443
No 459
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.54 E-value=0.68 Score=42.64 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=29.3
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEec
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSA 289 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SA 289 (591)
.+-+++++||...-++......+..++..+.....++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456899999999988877666666666655442456666554
No 460
>PRK06321 replicative DNA helicase; Provisional
Probab=86.49 E-value=10 Score=40.81 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
.|.=+++.|.+|.|||.-.+- +...+.. ..+..+++++. -.-..|+...+.. ...++....+..+.-...+
T Consensus 225 ~G~LiiiaarPgmGKTafal~-ia~~~a~-----~~g~~v~~fSL-EMs~~ql~~Rlla--~~s~v~~~~i~~~~l~~~e 295 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALN-IAENFCF-----QNRLPVGIFSL-EMTVDQLIHRIIC--SRSEVESKKISVGDLSGRD 295 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHH-HHHHHHH-----hcCCeEEEEec-cCCHHHHHHHHHH--hhcCCCHHHhhcCCCCHHH
Confidence 445568899999999965433 3333321 12455666652 2223344433322 2222222222223323333
Q ss_pred HHHH------hcCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 218 AERI------VKGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 218 ~~~l------~~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
+..+ .....+.|- |...+...++... .-..+++||||=.+.|.
T Consensus 296 ~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 296 FQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcC
Confidence 3322 123456554 3334444333221 12357899999999775
No 461
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.46 E-value=5.6 Score=40.47 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhH
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKV 295 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~ 295 (591)
...+++|+|++|.|.. .....+.+++...+. ... ++++++-+..+
T Consensus 112 ~~~kV~iiEp~~~Ld~-~a~naLLk~LEep~~-~~~-~Ilvth~~~~l 156 (325)
T PRK08699 112 GGLRVILIHPAESMNL-QAANSLLKVLEEPPP-QVV-FLLVSHAADKV 156 (325)
T ss_pred CCceEEEEechhhCCH-HHHHHHHHHHHhCcC-CCE-EEEEeCChHhC
Confidence 5678999999998864 334566666666653 433 44444433333
No 462
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.40 E-value=2.2 Score=49.02 Aligned_cols=19 Identities=26% Similarity=0.100 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+++.||+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4557999999999999764
No 463
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.36 E-value=3.9 Score=38.19 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=51.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----c-ccCCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----A-ARGLDIPA 417 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~-~~GiDip~ 417 (591)
...++||.+++...+......+... ++.+..++|+.+.......+. +...|+|+|.. + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999988877766655 677888999988766544332 66789999952 2 22256677
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777763
No 464
>PRK05748 replicative DNA helicase; Provisional
Probab=86.35 E-value=7.5 Score=41.57 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=56.5
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
-+..|.=+++.|+||.|||...+- ++..+.. ..+..+++++. -.-..|+...+... ..++....+..|.-.
T Consensus 199 G~~~G~livIaarpg~GKT~~al~-ia~~~a~-----~~g~~v~~fSl-Ems~~~l~~R~l~~--~~~v~~~~i~~~~l~ 269 (448)
T PRK05748 199 GLQPNDLIIVAARPSVGKTAFALN-IAQNVAT-----KTDKNVAIFSL-EMGAESLVMRMLCA--EGNIDAQRLRTGQLT 269 (448)
T ss_pred CCCCCceEEEEeCCCCCchHHHHH-HHHHHHH-----hCCCeEEEEeC-CCCHHHHHHHHHHH--hcCCCHHHhhcCCCC
Confidence 344566788999999999965433 3322221 12455666652 33344444443211 112222212222222
Q ss_pred hHHHHHH------hcCCCEEEe-Cc----hHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 215 RGEAERI------VKGVNLLVA-TP----GRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 215 ~~~~~~l------~~~~~Iiv~-Tp----~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
..++..+ .....+.|. +| ..+...++... .....+++||||=.+.|.
T Consensus 270 ~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~-~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 270 DDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLA-QEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccchhcC
Confidence 3333222 223455553 33 34443332211 001257899999999774
No 465
>PRK09087 hypothetical protein; Validated
Probab=86.32 E-value=1.6 Score=41.83 Aligned_cols=40 Identities=10% Similarity=0.021 Sum_probs=24.7
Q ss_pred EEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 252 CLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 252 ~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
+|+||++|.+. .-...+..+++.+.....++++.|.|.|+
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 79999999763 22455667776666534555544444444
No 466
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=86.32 E-value=5.4 Score=40.32 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=26.3
Q ss_pred CcHHHHHhhcccc----CCC---cEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 125 MTQIQARAVPPLM----VGK---DVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 125 ~~~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
+.|+|...+..+. +++ -.++.||.|.||+..+.. +.+.++.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC 51 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLC 51 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 4566666665544 343 588999999999966543 3344443
No 467
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=86.26 E-value=2.3 Score=41.42 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=17.4
Q ss_pred ccCCCcEEEEccCCCCchHH
Q 007743 136 LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~ 155 (591)
+-.|+.+++.++.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45889999999999999953
No 468
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.21 E-value=0.71 Score=50.72 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=86.2
Q ss_pred CCCcHHHHHhhccccC--------CC--cEEEEccCCCC--chHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH
Q 007743 123 QFMTQIQARAVPPLMV--------GK--DVLGAARTGSG--KTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT 190 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~--------g~--dvlv~a~TGsG--KTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~ 190 (591)
..+...|.+++-.+.+ |. -.++-...|.| .|.+-+ |++..++ ...++|.++-+..|-...
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk------GRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK------GRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc------ccceeEEEEeccccccch
Confidence 3678888888865443 32 24554444554 455432 4444443 457899999888887666
Q ss_pred HHHHHHHHhhcCCeEEEE----EcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC-----------CCccC-CceEEE
Q 007743 191 HAVAKDLLKYHSQTVGLV----IGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK-----------GFIYK-NLKCLV 254 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~----~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-----------~~~~~-~l~~lV 254 (591)
...++.+.. +++.|..+ ++..+... .... .-.|+++|+..|.-.-+... .|.-. .-.+||
T Consensus 335 ERDL~DigA-~~I~V~alnK~KYakIss~e-n~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIv 410 (1300)
T KOG1513|consen 335 ERDLRDIGA-TGIAVHALNKFKYAKISSKE-NTNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIV 410 (1300)
T ss_pred hhchhhcCC-CCccceehhhcccccccccc-cCCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEE
Confidence 666665432 33443322 11111100 0001 13689999976643322110 01111 126899
Q ss_pred EeCchhhhc---------cccHHHHHHHHHhCCCCCccEEEEeccC
Q 007743 255 IDEADRILE---------ANFEEEMRQIMKLLPKKDRQTALFSATQ 291 (591)
Q Consensus 255 lDEah~l~~---------~~f~~~~~~i~~~l~~~~~q~ll~SAT~ 291 (591)
|||||+--+ .--+..+..+-+.|| ..+++.-|||-
T Consensus 411 fDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP--~ARVVYASATG 454 (1300)
T KOG1513|consen 411 FDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP--NARVVYASATG 454 (1300)
T ss_pred ehhhhhhcccccccCCCcCcccHhHHHHHHhCC--CceEEEeeccC
Confidence 999997543 113456777778888 46788899984
No 469
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.21 E-value=6.1 Score=43.13 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=35.7
Q ss_pred CcccccccCCCCHHHHHHHH---HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 99 MSTTSFDSLGLSQHTFRAIQ---DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 99 ~~~~~f~~l~l~~~l~~~l~---~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+|+++|=-+.+.+.|+ .+...+|-.+.+-.| -.-+-|++.+|.|+|||+++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 35578999985555555554 233344444444442 23477999999999999874
No 470
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=86.04 E-value=2.9 Score=40.38 Aligned_cols=88 Identities=10% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCeEeccCccCHHHHHHHHHHhhcCC----ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcc
Q 007743 373 QVDCFDIHGKQKQQKRTTTFFDFCKAE----KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARG 448 (591)
Q Consensus 373 ~~~~~~lh~~~~~~~R~~~~~~F~~g~----~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g 448 (591)
++.+..++++.+... -.|.++. ..|+|.=+.++||+.+++........-|...+++.||.=--|=-.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666665554432 3344443 7899999999999999999999988889999999998654442123457
Q ss_pred eEEEEeChhhHHHHHHH
Q 007743 449 NALLFLIPEELQFLRYL 465 (591)
Q Consensus 449 ~~i~~~~~~e~~~~~~l 465 (591)
.|-++++++-...+..+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 88888877666666555
No 471
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=85.96 E-value=2.1 Score=48.40 Aligned_cols=71 Identities=24% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.+++-|++++... ...++|.|..|||||.+-.--+...+......+ ..++.++=|+-.|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p---~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDP---EQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcCh---HHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999777 567899999999999986555554444433322 3488999999999999988888775
No 472
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.95 E-value=5.1 Score=46.63 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.6
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
.++++.||+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997753
No 473
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=85.93 E-value=1.1 Score=49.96 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
..++++.||||||||..+++|-+-. .+.-++|+=|--|++.......
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~---------~~gS~VV~DpKgEl~~~Ta~~R 270 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK---------WGGPLVVLDPSTEVAPMVSEHR 270 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc---------CCCCEEEEeCcHHHHHHHHHHH
Confidence 3589999999999999999997532 1334777779999876555433
No 474
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.67 E-value=1.5 Score=52.51 Aligned_cols=60 Identities=28% Similarity=0.405 Sum_probs=45.8
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.+.+++|.|..|||||.+-..-++..|+... +..-..+|||+.|+.-+..+...+..-..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~--~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG--PLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC--CCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 5679999999999999997666677666532 22345689999999999988777765443
No 475
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.64 E-value=2.7 Score=48.64 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCchHHhHH
Q 007743 139 GKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~l 158 (591)
.+++++.||+|+|||...-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 35899999999999987543
No 476
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=85.61 E-value=5.3 Score=36.91 Aligned_cols=17 Identities=41% Similarity=0.376 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
.+++.||.|+|||....
T Consensus 16 ~~L~~G~~G~gkt~~a~ 32 (188)
T TIGR00678 16 AYLFAGPEGVGKELLAL 32 (188)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997644
No 477
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=85.59 E-value=3 Score=43.27 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=19.5
Q ss_pred cccCCCcEEEEccCCCCchHHhH
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~ 157 (591)
..-.|..|++.++||+||++.+.
T Consensus 97 ~ap~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 97 YAPSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred hCCCCCcEEEecCCCccHHHHHH
Confidence 44578899999999999998754
No 478
>PHA00350 putative assembly protein
Probab=85.56 E-value=4.1 Score=42.38 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.2
Q ss_pred EEEEccCCCCchHHhHH
Q 007743 142 VLGAARTGSGKTLAFLI 158 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~l 158 (591)
.++.|..|||||+..+-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 47889999999988664
No 479
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=85.40 E-value=0.67 Score=51.62 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=34.6
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHA 192 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~ 192 (591)
.++++.||||||||..+++|.+.. .+..+||+=|--|+..-...
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~---------~~~S~VV~D~KGE~~~~Tag 219 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLS---------WGHSSVITDLKGELWALTAG 219 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhh---------CCCCEEEEeCcHHHHHHHHH
Confidence 579999999999999999998743 13458888899998654443
No 480
>PRK07413 hypothetical protein; Validated
Probab=85.33 E-value=8.6 Score=39.62 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCceEEEEeCchhhhccccH--HHHHHHHHhCCCCCccEEEEeccCchhHHHHHHh
Q 007743 248 KNLKCLVIDEADRILEANFE--EEMRQIMKLLPKKDRQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~--~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~ 301 (591)
..+++||+||+-..++.++. +.+..+++..|. ..-+++.--.+|+.+.+++..
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~-~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPE-GLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCC-CCEEEEeCCCCCHHHHHhCCe
Confidence 46899999999988887764 466667776665 566777777788877776654
No 481
>PRK09354 recA recombinase A; Provisional
Probab=85.26 E-value=3.2 Score=42.40 Aligned_cols=43 Identities=26% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
.|+-+.+.+|+|||||...+..+.+.. ..+..+++|..--.+-
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-------~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-------KAGGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-------HcCCcEEEECCccchH
Confidence 466788999999999977554444332 1356788887655554
No 482
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.16 E-value=5.6 Score=46.20 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
.++++.||+|+|||...-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997743
No 483
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.14 E-value=25 Score=36.75 Aligned_cols=131 Identities=19% Similarity=0.229 Sum_probs=76.1
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA 218 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 218 (591)
-++.++--|||||.+..- |..++.. .+.++++++ ..|.-|.. .++.++...+..+.-. +......+.
T Consensus 102 vImmvGLQGsGKTTt~~K--LA~~lkk-----~~~kvllVaaD~~RpAA~e---QL~~La~q~~v~~f~~-~~~~~Pv~I 170 (451)
T COG0541 102 VILMVGLQGSGKTTTAGK--LAKYLKK-----KGKKVLLVAADTYRPAAIE---QLKQLAEQVGVPFFGS-GTEKDPVEI 170 (451)
T ss_pred EEEEEeccCCChHhHHHH--HHHHHHH-----cCCceEEEecccCChHHHH---HHHHHHHHcCCceecC-CCCCCHHHH
Confidence 377889999999988542 2233332 345556555 45666655 5555655555444322 111111111
Q ss_pred HHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh-ccccHHHHHHHHHhCCCCCccEEEEeccCchhHHH
Q 007743 219 ERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL-EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVED 297 (591)
Q Consensus 219 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~-~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~ 297 (591)
+ ..-++... ...++++|+|=|-|+. +.....++..|-..+.+ ...++.+-|+......+
T Consensus 171 -----------a--k~al~~ak------~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P-~E~llVvDam~GQdA~~ 230 (451)
T COG0541 171 -----------A--KAALEKAK------EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP-DETLLVVDAMIGQDAVN 230 (451)
T ss_pred -----------H--HHHHHHHH------HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC-CeEEEEEecccchHHHH
Confidence 0 01122222 2346789999888765 34556677888777775 56677778888877777
Q ss_pred HHHhh
Q 007743 298 LARLS 302 (591)
Q Consensus 298 l~~~~ 302 (591)
.++.+
T Consensus 231 ~A~aF 235 (451)
T COG0541 231 TAKAF 235 (451)
T ss_pred HHHHH
Confidence 77654
No 484
>PRK05595 replicative DNA helicase; Provisional
Probab=85.14 E-value=3.4 Score=44.10 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=55.0
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccch
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARR 215 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 215 (591)
+..|.=+++.|+||.|||...+--+.+...+ .|..+++++.- .-..|+...+-.. ..++....+..|.-..
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~------~g~~vl~fSlE-ms~~~l~~R~~a~--~~~v~~~~~~~~~l~~ 268 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALR------EGKSVAIFSLE-MSKEQLAYKLLCS--EANVDMLRLRTGNLED 268 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHH------cCCcEEEEecC-CCHHHHHHHHHHH--hcCCCHHHHhcCCCCH
Confidence 3445567789999999996644322222112 35567777642 2233433333222 1222222222222222
Q ss_pred HHHHHHh------cCCCEEEe-Cc----hHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 216 GEAERIV------KGVNLLVA-TP----GRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 216 ~~~~~l~------~~~~Iiv~-Tp----~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
.++..+. ....+.|- +| ..+...++... .-..+++||||=.+.|..
T Consensus 269 ~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~--~~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 269 KDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLK--IEHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEeHHHhccC
Confidence 3332222 12345443 32 33333333211 113588999999998763
No 485
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.04 E-value=3 Score=46.59 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC-----cccc-CCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI-----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD-----VAAR-GLDIPA 417 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~-GiDip~ 417 (591)
..++||.|||+.-+.++++.+... ++.+..+||+.+...+...+. ....|+|+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457999999999999888776653 678899999988765544432 4578999995 3333 367778
Q ss_pred CcEEE
Q 007743 418 VDWIV 422 (591)
Q Consensus 418 v~~VI 422 (591)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88776
No 486
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=84.98 E-value=20 Score=34.66 Aligned_cols=25 Identities=16% Similarity=-0.025 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHcCC-CeEeccCcc
Q 007743 359 CNSVKFHSELLRYIQV-DCFDIHGKQ 383 (591)
Q Consensus 359 ~~~~~~l~~~L~~~~~-~~~~lh~~~ 383 (591)
..-++++++.|+..+. .+..-|.++
T Consensus 258 V~iae~La~~l~~~~~~~v~v~HRd~ 283 (286)
T COG1660 258 VYIAEQLAEYLRARGKYNVQVRHRDL 283 (286)
T ss_pred HHHHHHHHHHHHhccCceEEEeehhh
Confidence 4567788888877643 677777655
No 487
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.94 E-value=1 Score=50.27 Aligned_cols=47 Identities=26% Similarity=0.173 Sum_probs=36.0
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.++++.||||||||..+++|-|... ...+||+=|--|+........+
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~---------~~S~VV~D~KGEl~~~Ta~~R~ 191 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW---------PGSAIVHDIKGENWQLTAGFRA 191 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC---------CCCEEEEeCcchHHHHHHHHHH
Confidence 5899999999999999999976542 2347788888888766554433
No 488
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=84.92 E-value=8.4 Score=41.18 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=15.1
Q ss_pred cEEEEccCCCCchHHhHH
Q 007743 141 DVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~l 158 (591)
.+++.||.|+|||.+...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999987554
No 489
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=84.83 E-value=6.7 Score=34.54 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhC
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLL 277 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l 277 (591)
.+-+++++||.-.-+|......+..++..+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 455799999999888877677777777665
No 490
>PRK10263 DNA translocase FtsK; Provisional
Probab=84.81 E-value=3.5 Score=48.74 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=20.6
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
-+++|.|.||||||.+.-.-|+..+++
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~ 1037 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYK 1037 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 479999999999998865555555544
No 491
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=84.81 E-value=1.6 Score=46.11 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=47.5
Q ss_pred cEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 351 KVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 351 ~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
-.|||++|++-+.++...|... ++.+..+.|||......+++++ ...|+|||.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3799999999999999988765 7899999999999999999887 678999998
No 492
>PRK09165 replicative DNA helicase; Provisional
Probab=84.77 E-value=5.3 Score=43.26 Aligned_cols=123 Identities=19% Similarity=0.086 Sum_probs=59.2
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhccc--------CCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEE
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQF--------APRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL 207 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~--------~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~ 207 (591)
+..|.=+++.|+||.|||...+--+.+......+ ....+..++|++. -.-..|+...+... ..++....
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~--~s~v~~~~ 290 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSE--QSEISSSK 290 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHH--hcCCCHHH
Confidence 3345567889999999997654333333222110 0112556777653 23344544444332 22222222
Q ss_pred EEcCccchHHHHHHh------cCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 208 VIGGSARRGEAERIV------KGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 208 ~~gg~~~~~~~~~l~------~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
+..|.-...++..+. ...++.|- |+..+...++... .-..+++||||=.+.|..
T Consensus 291 i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 291 IRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhccC
Confidence 222333333333322 22445553 3344444443221 113578999999997753
No 493
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.75 E-value=4.8 Score=46.66 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERI 221 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 221 (591)
+++.||||+|||...-.-+-.. ..+...++....-+......
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l--------~~~~~~~~~~dmse~~~~~~------------------------------ 640 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELL--------YGGEQNLITINMSEFQEAHT------------------------------ 640 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--------hCCCcceEEEeHHHhhhhhh------------------------------
Q ss_pred hcCCCEEEeCc---------hHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCC------------
Q 007743 222 VKGVNLLVATP---------GRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKK------------ 280 (591)
Q Consensus 222 ~~~~~Iiv~Tp---------~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~------------ 280 (591)
..-++++| |.|...++..+ .++|+|||++.+ ....+..++..+...
T Consensus 641 ---~~~l~g~~~gyvg~~~~g~L~~~v~~~p------~svvllDEieka----~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 641 ---VSRLKGSPPGYVGYGEGGVLTEAVRRKP------YSVVLLDEVEKA----HPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred ---hccccCCCCCcccccccchHHHHHHhCC------CcEEEEechhhc----CHHHHHHHHHHhhcceeecCCCcEEec
Q ss_pred CccEEEEeccCchh
Q 007743 281 DRQTALFSATQTKK 294 (591)
Q Consensus 281 ~~q~ll~SAT~~~~ 294 (591)
...+++||+.+...
T Consensus 708 ~n~iiI~TSNlg~~ 721 (852)
T TIGR03345 708 KNTVILLTSNAGSD 721 (852)
T ss_pred cccEEEEeCCCchH
No 494
>PRK04328 hypothetical protein; Provisional
Probab=84.74 E-value=1.9 Score=42.10 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
.|.-+++.+++|+|||...+-.+.+.+ ..+..+++++ +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-------~~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-------QMGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-------hcCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 567889999999999965433333332 2356677776 444555666666555
No 495
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=84.62 E-value=0.9 Score=50.23 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=34.7
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAV 193 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~ 193 (591)
.++++.||||||||..+++|-+-. -+.-++|+=|.-|++......
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~---------~~gS~VV~DpKgE~~~~Ta~~ 256 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALK---------YGGPLVCLDPSTEVAPMVCEH 256 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhc---------CCCCEEEEEChHHHHHHHHHH
Confidence 589999999999999999996432 133478888998886655443
No 496
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=84.42 E-value=2.2 Score=47.57 Aligned_cols=52 Identities=31% Similarity=0.245 Sum_probs=35.6
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH--HHHHHHHHHHHH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE--LAIQTHAVAKDL 197 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre--La~q~~~~~~~~ 197 (591)
..++++.|+||+|||..+.+-+.+.+. .+..++++=|-.. |...++..++..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~-------~g~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIR-------RGDVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCCCchHHHHHHHHHHHHh
Confidence 468999999999999887554444443 2456777778754 666666555544
No 497
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.22 E-value=9.3 Score=42.48 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=30.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhH
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+..++++-.++..++.|... ++...+ ....++-+++.||+|+|||.++-
T Consensus 79 rP~~ldel~~~~~ki~~l~~~-------l~~~~~-~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETW-------LKAQVL-ENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHH-------HHhccc-ccCCCcEEEEECCCCCCHHHHHH
Confidence 456788888888776655432 110001 11233448999999999998743
No 498
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=84.12 E-value=3 Score=39.78 Aligned_cols=47 Identities=26% Similarity=0.130 Sum_probs=27.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
..|.-+.+.|++|+|||...+.-+...+...... .....++++..-.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~-g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELG-GLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccC-CCcceEEEEecCC
Confidence 3466788999999999976554333332211000 1125677777543
No 499
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=84.11 E-value=7.2 Score=37.68 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=31.6
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhccc-----CCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQF-----APRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~-----~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
-.++.||.|+|||...+--++....-..+ ....+.+|||+.- -.=..++.+.+..+...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQH 66 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHhh
Confidence 35889999999997755444332211111 1123557888872 11123444455555543
No 500
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=83.96 E-value=2.5 Score=42.52 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
.++++.||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999664
Done!