Query 007743
Match_columns 591
No_of_seqs 465 out of 4060
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 09:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.8E-63 2.7E-67 523.4 46.1 368 100-473 54-428 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.8E-58 6.3E-63 488.5 42.4 361 100-465 13-391 (417)
3 3sqw_A ATP-dependent RNA helic 100.0 4.7E-59 1.6E-63 512.7 36.0 429 103-539 18-476 (579)
4 2j0s_A ATP-dependent RNA helic 100.0 2.6E-58 8.7E-63 486.4 38.3 367 101-477 36-404 (410)
5 3i5x_A ATP-dependent RNA helic 100.0 4.8E-58 1.7E-62 504.0 37.0 428 108-543 78-532 (563)
6 1s2m_A Putative ATP-dependent 100.0 3.1E-56 1.1E-60 468.8 42.0 365 101-476 20-385 (400)
7 3eiq_A Eukaryotic initiation f 100.0 2E-56 6.7E-61 472.4 38.1 367 101-477 39-408 (414)
8 1xti_A Probable ATP-dependent 100.0 1.4E-55 4.7E-60 462.3 42.5 367 101-476 7-378 (391)
9 3fmp_B ATP-dependent RNA helic 100.0 2E-58 6.8E-63 496.9 19.3 358 98-467 88-457 (479)
10 3pey_A ATP-dependent RNA helic 100.0 5.4E-55 1.9E-59 458.1 41.0 378 101-492 4-392 (395)
11 3fht_A ATP-dependent RNA helic 100.0 4.1E-55 1.4E-59 461.9 39.7 368 96-475 19-399 (412)
12 1hv8_A Putative ATP-dependent 100.0 3.9E-54 1.3E-58 446.9 41.1 359 101-476 5-365 (367)
13 1fuu_A Yeast initiation factor 100.0 8.9E-56 3E-60 464.1 21.4 356 101-467 20-376 (394)
14 1oyw_A RECQ helicase, ATP-depe 100.0 6.6E-54 2.3E-58 463.5 29.2 382 102-520 2-394 (523)
15 2v1x_A ATP-dependent DNA helic 100.0 2.2E-52 7.6E-57 456.0 37.8 376 103-519 22-419 (591)
16 2z0m_A 337AA long hypothetical 100.0 1E-51 3.6E-56 423.7 36.1 331 109-466 1-331 (337)
17 3oiy_A Reverse gyrase helicase 100.0 2.6E-50 8.9E-55 425.6 27.7 321 113-465 10-371 (414)
18 3l9o_A ATP-dependent RNA helic 100.0 5.5E-50 1.9E-54 463.5 29.4 341 102-467 162-608 (1108)
19 3fho_A ATP-dependent RNA helic 100.0 8.3E-51 2.8E-55 439.3 19.4 359 102-474 119-489 (508)
20 1tf5_A Preprotein translocase 100.0 3.2E-49 1.1E-53 430.9 26.4 326 119-459 79-547 (844)
21 4ddu_A Reverse gyrase; topoiso 100.0 7E-47 2.4E-51 437.4 29.0 280 119-428 74-388 (1104)
22 2va8_A SSO2462, SKI2-type heli 100.0 7.5E-46 2.6E-50 417.7 35.4 340 101-459 7-410 (715)
23 4a2p_A RIG-I, retinoic acid in 100.0 1.4E-46 4.8E-51 412.4 28.2 336 120-460 3-511 (556)
24 2zj8_A DNA helicase, putative 100.0 8.5E-46 2.9E-50 417.2 34.5 334 103-459 2-389 (720)
25 3tbk_A RIG-I helicase domain; 100.0 6.5E-46 2.2E-50 406.8 29.2 334 124-465 4-515 (555)
26 2ykg_A Probable ATP-dependent 100.0 1.8E-46 6.2E-51 422.4 25.3 347 114-465 3-524 (696)
27 2fsf_A Preprotein translocase 100.0 3.5E-46 1.2E-50 405.6 26.0 324 119-459 70-585 (853)
28 2p6r_A Afuhel308 helicase; pro 100.0 3E-46 1E-50 419.7 24.4 335 103-460 2-391 (702)
29 4a2q_A RIG-I, retinoic acid in 100.0 3.5E-45 1.2E-49 416.2 29.9 337 119-460 243-752 (797)
30 1nkt_A Preprotein translocase 100.0 4.4E-44 1.5E-48 389.4 34.9 326 119-459 107-619 (922)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 6.8E-46 2.3E-50 429.6 20.9 317 118-466 52-463 (1054)
32 2xgj_A ATP-dependent RNA helic 100.0 5.9E-44 2E-48 409.7 34.4 323 118-467 81-510 (1010)
33 2whx_A Serine protease/ntpase/ 100.0 1.2E-47 3.9E-52 420.0 2.6 393 103-544 150-569 (618)
34 4a2w_A RIG-I, retinoic acid in 100.0 3E-44 1E-48 412.6 27.3 339 116-459 240-751 (936)
35 2jlq_A Serine protease subunit 100.0 8.9E-46 3E-50 393.6 7.9 373 121-543 1-401 (451)
36 1wp9_A ATP-dependent RNA helic 100.0 1E-42 3.5E-47 374.5 31.2 323 124-459 9-477 (494)
37 4a4z_A Antiviral helicase SKI2 100.0 3.7E-43 1.3E-47 403.2 28.4 328 119-467 35-504 (997)
38 1yks_A Genome polyprotein [con 100.0 1.1E-46 3.9E-51 398.6 -1.2 354 135-544 4-390 (440)
39 4f92_B U5 small nuclear ribonu 100.0 2.3E-42 7.7E-47 413.0 33.5 353 109-475 911-1326(1724)
40 4gl2_A Interferon-induced heli 100.0 8.5E-44 2.9E-48 400.8 16.6 317 124-442 7-507 (699)
41 1gm5_A RECG; helicase, replica 100.0 1.6E-42 5.4E-47 386.0 22.2 318 111-457 356-697 (780)
42 4f92_B U5 small nuclear ribonu 100.0 1.2E-41 4E-46 406.9 28.2 346 121-475 76-491 (1724)
43 2wv9_A Flavivirin protease NS2 100.0 1.3E-44 4.3E-49 398.3 0.2 370 116-544 202-624 (673)
44 2z83_A Helicase/nucleoside tri 100.0 1.4E-43 4.6E-48 377.3 6.1 359 133-544 15-404 (459)
45 2eyq_A TRCF, transcription-rep 100.0 1.8E-39 6.3E-44 377.9 35.6 324 107-458 586-923 (1151)
46 3o8b_A HCV NS3 protease/helica 100.0 4E-41 1.4E-45 364.7 17.5 279 124-461 217-518 (666)
47 2xau_A PRE-mRNA-splicing facto 100.0 2.6E-40 8.9E-45 370.7 24.5 334 101-459 71-445 (773)
48 2oca_A DAR protein, ATP-depend 100.0 5.4E-40 1.9E-44 356.1 23.1 313 123-455 112-453 (510)
49 2fwr_A DNA repair protein RAD2 100.0 9.4E-40 3.2E-44 350.8 19.5 294 124-456 93-453 (472)
50 2v6i_A RNA helicase; membrane, 100.0 3.2E-38 1.1E-42 333.2 20.4 272 138-455 1-289 (431)
51 3fmo_B ATP-dependent RNA helic 100.0 4.8E-38 1.7E-42 315.6 20.4 208 97-313 87-298 (300)
52 3fe2_A Probable ATP-dependent 100.0 5.2E-37 1.8E-41 299.3 25.7 212 100-314 27-239 (242)
53 3rc3_A ATP-dependent RNA helic 100.0 2E-37 6.7E-42 340.0 23.0 307 110-467 130-454 (677)
54 3ly5_A ATP-dependent RNA helic 100.0 4.5E-37 1.5E-41 303.0 22.7 210 100-310 50-261 (262)
55 3ber_A Probable ATP-dependent 100.0 5.6E-36 1.9E-40 292.9 25.8 205 102-312 43-247 (249)
56 2pl3_A Probable ATP-dependent 100.0 7.4E-36 2.5E-40 290.1 25.2 212 100-314 23-234 (236)
57 3iuy_A Probable ATP-dependent 100.0 6.7E-36 2.3E-40 288.8 22.9 209 99-311 16-227 (228)
58 1wrb_A DJVLGB; RNA helicase, D 100.0 9.3E-36 3.2E-40 292.5 22.1 213 100-314 21-241 (253)
59 3h1t_A Type I site-specific re 100.0 3.6E-36 1.2E-40 331.5 21.3 304 124-444 178-544 (590)
60 1vec_A ATP-dependent RNA helic 100.0 3.4E-35 1.2E-39 279.2 24.1 202 102-310 3-205 (206)
61 3bor_A Human initiation factor 100.0 1.5E-35 5E-40 288.0 20.7 207 100-313 28-235 (237)
62 1q0u_A Bstdead; DEAD protein, 100.0 9.4E-36 3.2E-40 285.9 19.0 207 101-314 3-213 (219)
63 2oxc_A Probable ATP-dependent 100.0 5.8E-35 2E-39 282.5 22.1 205 100-312 22-228 (230)
64 3jux_A Protein translocase sub 100.0 1.2E-32 4.1E-37 293.4 39.5 320 120-459 72-589 (822)
65 2gxq_A Heat resistant RNA depe 100.0 3.2E-34 1.1E-38 272.6 23.9 204 103-312 2-205 (207)
66 1qde_A EIF4A, translation init 100.0 2.3E-34 7.9E-39 277.2 22.7 206 101-314 13-218 (224)
67 3dmq_A RNA polymerase-associat 100.0 2.4E-34 8.1E-39 330.9 23.7 323 123-455 152-611 (968)
68 1t6n_A Probable ATP-dependent 100.0 8.1E-34 2.8E-38 272.6 23.1 204 101-311 13-219 (220)
69 3dkp_A Probable ATP-dependent 100.0 3.7E-34 1.3E-38 279.7 19.5 211 100-314 23-242 (245)
70 1z63_A Helicase of the SNF2/RA 100.0 5.4E-32 1.8E-36 292.5 26.9 311 124-457 37-453 (500)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.5E-31 8.6E-36 303.3 24.6 314 124-456 271-708 (1038)
72 1z3i_X Similar to RAD54-like; 100.0 1.4E-29 4.7E-34 280.2 32.4 325 124-457 55-528 (644)
73 3mwy_W Chromo domain-containin 100.0 8.3E-30 2.8E-34 289.0 30.1 328 124-465 236-694 (800)
74 2ipc_A Preprotein translocase 100.0 3.4E-28 1.2E-32 263.8 30.6 132 119-262 75-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 1.7E-27 6E-32 263.1 29.3 172 281-465 380-558 (664)
76 2hjv_A ATP-dependent RNA helic 100.0 2E-27 7E-32 216.4 19.2 152 320-472 6-158 (163)
77 2rb4_A ATP-dependent RNA helic 99.9 4.6E-27 1.6E-31 216.8 18.6 157 320-477 4-168 (175)
78 2d7d_A Uvrabc system protein B 99.9 4.4E-26 1.5E-30 251.8 29.9 129 335-465 429-564 (661)
79 1t5i_A C_terminal domain of A 99.9 3.8E-27 1.3E-31 216.4 16.8 154 321-475 3-158 (172)
80 3eaq_A Heat resistant RNA depe 99.9 7.5E-27 2.6E-31 222.0 19.4 154 324-478 6-160 (212)
81 1fuk_A Eukaryotic initiation f 99.9 1.3E-26 4.6E-31 211.5 19.0 153 323-476 3-157 (165)
82 2p6n_A ATP-dependent RNA helic 99.9 6.3E-27 2.2E-31 218.4 16.6 159 303-465 11-170 (191)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.6E-26 5.3E-31 214.8 16.1 147 319-466 15-162 (185)
84 3i32_A Heat resistant RNA depe 99.9 4E-26 1.4E-30 227.2 18.8 154 323-477 2-156 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.4E-26 4.7E-31 212.5 0.0 144 323-467 3-147 (170)
86 3b6e_A Interferon-induced heli 99.9 5.4E-24 1.9E-28 203.1 11.6 169 120-290 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 2.5E-23 8.5E-28 225.4 16.4 297 120-452 4-517 (540)
88 3llm_A ATP-dependent RNA helic 99.9 9.7E-23 3.3E-27 197.1 15.1 183 110-308 47-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 6.2E-21 2.1E-25 207.4 25.8 282 124-428 3-473 (551)
90 1rif_A DAR protein, DNA helica 99.9 4.7E-22 1.6E-26 198.0 10.2 159 124-300 113-271 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 6.6E-18 2.2E-22 185.0 24.3 82 124-211 3-88 (620)
92 2fz4_A DNA repair protein RAD2 99.8 8.7E-19 3E-23 169.2 15.1 138 124-294 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 3.8E-18 1.3E-22 167.6 15.3 125 332-457 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 2.1E-09 7.3E-14 117.5 9.0 145 126-289 151-297 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.0 2.8E-05 9.4E-10 84.1 12.2 124 124-287 189-312 (574)
96 3upu_A ATP-dependent DNA helic 98.0 2.6E-05 9E-10 82.3 10.8 72 117-194 18-94 (459)
97 2gk6_A Regulator of nonsense t 98.0 6.8E-05 2.3E-09 82.2 14.4 69 122-196 178-246 (624)
98 2xzl_A ATP-dependent helicase 97.9 8.4E-05 2.9E-09 83.4 14.7 69 123-197 359-427 (802)
99 4b3f_X DNA-binding protein smu 97.9 2.2E-05 7.4E-10 86.7 8.4 66 124-196 189-255 (646)
100 2wjy_A Regulator of nonsense t 97.8 0.00013 4.5E-09 81.7 13.9 67 124-196 356-422 (800)
101 3lfu_A DNA helicase II; SF1 he 97.8 0.0013 4.5E-08 72.4 21.3 72 123-199 8-79 (647)
102 3hgt_A HDA1 complex subunit 3; 97.4 0.00088 3E-08 65.8 11.9 123 333-460 107-240 (328)
103 2o0j_A Terminase, DNA packagin 97.2 0.0041 1.4E-07 63.2 13.5 74 124-202 163-236 (385)
104 3cpe_A Terminase, DNA packagin 96.9 0.0087 3E-07 65.0 14.2 143 124-288 163-311 (592)
105 2kjq_A DNAA-related protein; s 96.5 0.0045 1.5E-07 54.1 6.8 43 249-292 83-125 (149)
106 3vkw_A Replicase large subunit 96.5 0.006 2.1E-07 62.8 8.6 106 140-288 162-267 (446)
107 2orw_A Thymidine kinase; TMTK, 96.3 0.026 9E-07 51.1 11.0 40 138-184 2-41 (184)
108 3ec2_A DNA replication protein 96.3 0.011 3.8E-07 53.2 8.5 20 138-157 37-56 (180)
109 2b8t_A Thymidine kinase; deoxy 96.1 0.0032 1.1E-07 58.9 3.7 92 138-262 11-102 (223)
110 1xx6_A Thymidine kinase; NESG, 95.9 0.013 4.4E-07 53.4 6.7 40 138-184 7-46 (191)
111 1d2n_A N-ethylmaleimide-sensit 95.8 0.058 2E-06 52.0 11.3 18 140-157 65-82 (272)
112 3te6_A Regulatory protein SIR3 95.8 0.052 1.8E-06 53.6 10.9 27 138-165 44-70 (318)
113 3u4q_A ATP-dependent helicase/ 95.7 0.015 5.2E-07 68.7 8.1 107 124-239 10-116 (1232)
114 2j9r_A Thymidine kinase; TK1, 95.7 0.011 3.9E-07 54.4 5.4 41 138-185 27-67 (214)
115 3kl4_A SRP54, signal recogniti 95.5 0.085 2.9E-06 54.3 11.9 131 139-301 97-233 (433)
116 1uaa_A REP helicase, protein ( 95.5 0.02 6.8E-07 63.3 7.7 71 124-199 2-72 (673)
117 1l8q_A Chromosomal replication 95.5 0.037 1.3E-06 55.0 9.0 20 138-157 36-55 (324)
118 1pjr_A PCRA; DNA repair, DNA r 95.5 0.028 9.7E-07 62.5 8.7 72 123-199 10-81 (724)
119 2zpa_A Uncharacterized protein 95.1 0.034 1.2E-06 60.2 7.6 114 124-293 175-290 (671)
120 3h4m_A Proteasome-activating n 95.1 0.13 4.4E-06 49.8 11.2 53 101-156 13-68 (285)
121 2orv_A Thymidine kinase; TP4A 95.1 0.026 8.9E-07 52.6 5.7 41 138-185 18-58 (234)
122 3bos_A Putative DNA replicatio 95.1 0.037 1.3E-06 51.9 7.0 19 138-156 51-69 (242)
123 3u61_B DNA polymerase accessor 95.0 0.16 5.3E-06 50.3 11.8 38 248-286 104-141 (324)
124 3e2i_A Thymidine kinase; Zn-bi 94.8 0.024 8.2E-07 52.2 4.6 41 138-185 27-67 (219)
125 3dm5_A SRP54, signal recogniti 94.7 0.3 1E-05 50.3 13.0 131 139-301 100-234 (443)
126 2z4s_A Chromosomal replication 94.6 0.14 4.8E-06 53.2 10.3 42 249-290 194-236 (440)
127 2chg_A Replication factor C sm 94.3 0.39 1.3E-05 43.9 12.0 39 248-288 101-139 (226)
128 2p65_A Hypothetical protein PF 94.3 0.15 5E-06 45.4 8.7 18 139-156 43-60 (187)
129 1g5t_A COB(I)alamin adenosyltr 94.3 0.37 1.3E-05 43.6 11.2 138 140-300 29-172 (196)
130 1jbk_A CLPB protein; beta barr 94.2 0.11 3.9E-06 46.3 7.8 18 139-156 43-60 (195)
131 1w4r_A Thymidine kinase; type 94.1 0.041 1.4E-06 49.9 4.4 38 139-183 20-57 (195)
132 2v1u_A Cell division control p 93.9 0.17 5.9E-06 51.1 9.4 19 138-156 43-61 (387)
133 3syl_A Protein CBBX; photosynt 93.9 0.14 4.8E-06 50.2 8.3 20 138-157 66-85 (309)
134 1xwi_A SKD1 protein; VPS4B, AA 93.9 0.41 1.4E-05 47.3 11.7 50 101-156 8-62 (322)
135 3eie_A Vacuolar protein sortin 93.8 0.16 5.5E-06 50.3 8.6 51 100-156 13-68 (322)
136 1gm5_A RECG; helicase, replica 93.8 0.2 6.7E-06 55.8 10.0 91 333-423 400-496 (780)
137 1sxj_E Activator 1 40 kDa subu 93.6 0.52 1.8E-05 47.0 12.1 41 248-290 133-173 (354)
138 2w58_A DNAI, primosome compone 93.6 0.13 4.3E-06 47.0 6.9 17 140-156 55-71 (202)
139 2dr3_A UPF0273 protein PH0284; 93.6 0.3 1E-05 45.8 9.7 52 136-195 20-71 (247)
140 3pfi_A Holliday junction ATP-d 93.5 0.55 1.9E-05 46.5 12.0 17 140-156 56-72 (338)
141 2qby_B CDC6 homolog 3, cell di 93.4 0.21 7.1E-06 50.6 8.8 18 139-156 45-62 (384)
142 2qz4_A Paraplegin; AAA+, SPG7, 93.4 1.8 6.2E-05 40.8 15.0 52 102-156 3-56 (262)
143 1a5t_A Delta prime, HOLB; zinc 93.2 0.18 6.2E-06 50.2 7.8 32 126-157 4-42 (334)
144 2zan_A Vacuolar protein sortin 93.2 0.51 1.7E-05 49.0 11.5 54 100-156 129-184 (444)
145 3cf0_A Transitional endoplasmi 93.0 0.21 7.1E-06 48.9 7.8 53 101-156 11-66 (301)
146 1fnn_A CDC6P, cell division co 92.9 0.19 6.5E-06 50.9 7.6 16 141-156 46-61 (389)
147 2qp9_X Vacuolar protein sortin 92.7 0.39 1.3E-05 48.2 9.5 19 139-157 84-102 (355)
148 3vfd_A Spastin; ATPase, microt 92.6 0.3 1E-05 49.8 8.6 53 101-156 111-165 (389)
149 2w0m_A SSO2452; RECA, SSPF, un 92.4 0.43 1.5E-05 44.1 8.9 22 136-157 20-41 (235)
150 2r6a_A DNAB helicase, replicat 92.1 1 3.5E-05 46.8 12.2 119 134-263 198-327 (454)
151 2q6t_A DNAB replication FORK h 91.8 1.3 4.5E-05 45.8 12.6 118 135-263 196-324 (444)
152 2zts_A Putative uncharacterize 91.4 0.23 7.7E-06 46.8 5.7 51 138-195 29-79 (251)
153 2qby_A CDC6 homolog 1, cell di 91.4 1.8 6.2E-05 43.3 12.9 18 139-156 45-62 (386)
154 1sxj_D Activator 1 41 kDa subu 91.3 0.82 2.8E-05 45.4 10.0 39 248-288 132-170 (353)
155 1njg_A DNA polymerase III subu 91.1 2.6 8.7E-05 38.7 12.8 16 141-156 47-62 (250)
156 3oiy_A Reverse gyrase helicase 90.8 0.89 3.1E-05 46.4 9.9 77 347-423 62-145 (414)
157 3d8b_A Fidgetin-like protein 1 90.4 0.57 2E-05 47.0 7.8 53 101-156 80-134 (357)
158 1iqp_A RFCS; clamp loader, ext 90.3 1.4 4.7E-05 43.1 10.5 42 248-292 109-150 (327)
159 4b4t_K 26S protease regulatory 90.3 0.44 1.5E-05 48.9 6.8 54 100-156 167-223 (428)
160 3hu3_A Transitional endoplasmi 90.0 1.3 4.4E-05 46.5 10.3 19 138-156 237-255 (489)
161 1sxj_A Activator 1 95 kDa subu 89.6 0.46 1.6E-05 50.4 6.7 41 248-291 147-189 (516)
162 2ehv_A Hypothetical protein PH 89.2 0.32 1.1E-05 45.8 4.6 43 248-291 134-181 (251)
163 2cvh_A DNA repair and recombin 89.2 0.82 2.8E-05 41.9 7.3 23 136-158 17-39 (220)
164 1cr0_A DNA primase/helicase; R 89.0 0.64 2.2E-05 45.2 6.8 22 136-157 32-53 (296)
165 3pvs_A Replication-associated 88.9 0.61 2.1E-05 48.3 6.8 18 140-157 51-68 (447)
166 4a1f_A DNAB helicase, replicat 88.6 1.1 3.7E-05 44.5 8.1 117 135-263 42-170 (338)
167 1jr3_A DNA polymerase III subu 88.5 1.9 6.5E-05 43.1 10.1 40 248-290 118-157 (373)
168 1n0w_A DNA repair protein RAD5 88.5 1.7 5.7E-05 40.4 9.1 23 136-158 21-43 (243)
169 1t6n_A Probable ATP-dependent 87.4 3.9 0.00013 37.3 10.8 72 349-423 82-164 (220)
170 2eyq_A TRCF, transcription-rep 87.3 1.6 5.6E-05 50.9 9.8 77 347-423 650-731 (1151)
171 3fe2_A Probable ATP-dependent 87.1 4.3 0.00015 37.7 11.1 71 349-423 102-182 (242)
172 1hqc_A RUVB; extended AAA-ATPa 87.0 0.93 3.2E-05 44.5 6.6 18 139-156 38-55 (324)
173 2chq_A Replication factor C sm 86.8 1.7 5.9E-05 42.2 8.5 43 101-156 13-55 (319)
174 1sxj_B Activator 1 37 kDa subu 86.8 1.1 3.7E-05 43.8 6.9 38 249-288 107-144 (323)
175 3m6a_A ATP-dependent protease 86.7 1 3.4E-05 48.0 7.0 19 138-156 107-125 (543)
176 3bh0_A DNAB-like replicative h 86.6 1.7 6E-05 42.6 8.2 54 135-196 64-117 (315)
177 1w5s_A Origin recognition comp 86.5 1.1 3.8E-05 45.5 7.1 18 139-156 50-69 (412)
178 3ber_A Probable ATP-dependent 86.3 3.3 0.00011 38.8 9.8 72 348-423 110-192 (249)
179 1e9r_A Conjugal transfer prote 86.2 0.65 2.2E-05 48.0 5.1 45 137-188 51-95 (437)
180 2hjv_A ATP-dependent RNA helic 86.1 4.7 0.00016 34.9 10.1 74 174-258 35-112 (163)
181 2i1q_A DNA repair and recombin 86.1 3.8 0.00013 40.1 10.5 21 137-157 96-116 (322)
182 3cf2_A TER ATPase, transitiona 85.9 1.9 6.6E-05 47.9 8.9 55 99-156 471-528 (806)
183 1ls1_A Signal recognition part 85.6 5.4 0.00019 38.6 11.1 20 138-157 97-116 (295)
184 1nlf_A Regulatory protein REPA 85.2 3.1 0.00011 39.7 9.2 26 134-159 25-50 (279)
185 2p6n_A ATP-dependent RNA helic 85.1 9 0.00031 34.2 11.7 73 174-257 54-130 (191)
186 3cmu_A Protein RECA, recombina 84.9 1.1 3.8E-05 54.5 6.8 42 137-185 1425-1466(2050)
187 2gno_A DNA polymerase III, gam 84.6 2.8 9.7E-05 40.8 8.5 42 248-292 81-122 (305)
188 3n70_A Transport activator; si 84.4 0.48 1.6E-05 40.6 2.6 21 136-156 21-41 (145)
189 3co5_A Putative two-component 84.3 0.42 1.4E-05 40.8 2.1 20 136-155 24-43 (143)
190 4ddu_A Reverse gyrase; topoiso 84.1 2.5 8.6E-05 49.1 9.1 76 347-423 119-202 (1104)
191 1qvr_A CLPB protein; coiled co 84.1 1.7 6E-05 49.0 7.7 19 139-157 191-209 (854)
192 2fna_A Conserved hypothetical 84.0 27 0.00091 34.0 15.9 52 232-290 124-178 (357)
193 2rb4_A ATP-dependent RNA helic 83.8 4.4 0.00015 35.5 8.9 72 173-255 33-108 (175)
194 2oxc_A Probable ATP-dependent 83.8 2 6.9E-05 39.7 6.9 71 348-423 91-172 (230)
195 1vma_A Cell division protein F 83.4 13 0.00043 36.1 12.7 19 139-157 104-122 (306)
196 1xp8_A RECA protein, recombina 83.3 1.9 6.6E-05 43.2 6.9 41 136-183 71-111 (366)
197 2v1x_A ATP-dependent DNA helic 82.9 3.6 0.00012 44.2 9.2 59 349-407 84-144 (591)
198 2l8b_A Protein TRAI, DNA helic 82.5 0.97 3.3E-05 40.1 3.7 122 125-290 35-158 (189)
199 4b4t_M 26S protease regulatory 82.5 1.6 5.4E-05 44.8 5.9 54 100-156 176-232 (434)
200 2pl3_A Probable ATP-dependent 82.4 4.8 0.00016 37.2 9.0 71 348-423 96-177 (236)
201 1fuk_A Eukaryotic initiation f 82.4 7.3 0.00025 33.7 9.6 74 173-257 29-106 (165)
202 3e70_C DPA, signal recognition 81.9 7.7 0.00026 38.1 10.5 51 250-301 212-263 (328)
203 3eaq_A Heat resistant RNA depe 81.8 7.6 0.00026 35.3 9.9 71 174-255 31-105 (212)
204 2gxq_A Heat resistant RNA depe 81.7 8 0.00027 34.6 10.0 72 348-423 71-150 (207)
205 1oyw_A RECQ helicase, ATP-depe 81.1 4.3 0.00015 42.9 9.0 59 349-407 65-123 (523)
206 3k1j_A LON protease, ATP-depen 81.0 6.5 0.00022 42.3 10.5 22 135-156 56-77 (604)
207 3hr8_A Protein RECA; alpha and 81.0 2 6.8E-05 42.9 5.9 44 136-186 58-101 (356)
208 3bor_A Human initiation factor 80.4 5.9 0.0002 36.6 8.8 86 335-423 80-179 (237)
209 1xti_A Probable ATP-dependent 79.8 9.7 0.00033 37.9 10.8 72 349-423 76-158 (391)
210 1r6b_X CLPA protein; AAA+, N-t 79.5 5 0.00017 44.5 9.2 20 138-157 206-225 (758)
211 1t5i_A C_terminal domain of A 79.1 12 0.0004 32.7 9.9 74 173-257 30-107 (172)
212 2ffh_A Protein (FFH); SRP54, s 79.0 20 0.00067 36.6 12.7 45 138-189 97-143 (425)
213 3iuy_A Probable ATP-dependent 78.9 6.4 0.00022 36.0 8.5 72 348-423 93-173 (228)
214 1vec_A ATP-dependent RNA helic 78.6 5.3 0.00018 35.8 7.7 71 349-423 71-152 (206)
215 3lda_A DNA repair protein RAD5 78.0 5.8 0.0002 40.2 8.4 20 138-157 177-196 (400)
216 3pxi_A Negative regulator of g 77.8 1.2 4E-05 49.7 3.4 94 141-288 523-627 (758)
217 3io5_A Recombination and repai 77.5 3.7 0.00013 40.1 6.3 44 138-187 28-71 (333)
218 1ypw_A Transitional endoplasmi 77.3 10 0.00035 42.4 10.8 100 136-294 235-351 (806)
219 2yhs_A FTSY, cell division pro 76.6 14 0.00046 38.5 10.7 26 139-166 293-318 (503)
220 1w36_B RECB, exodeoxyribonucle 76.3 4.3 0.00015 47.6 7.8 61 137-198 15-80 (1180)
221 4ag6_A VIRB4 ATPase, type IV s 75.0 2.7 9.1E-05 42.6 4.9 43 137-186 33-75 (392)
222 3b85_A Phosphate starvation-in 74.5 2.5 8.5E-05 38.6 4.1 34 123-156 6-39 (208)
223 1wrb_A DJVLGB; RNA helicase, D 74.3 16 0.00054 34.0 9.9 71 349-423 100-180 (253)
224 1j8m_F SRP54, signal recogniti 74.3 21 0.00073 34.3 11.0 19 139-157 98-116 (297)
225 1qde_A EIF4A, translation init 73.5 3.9 0.00013 37.4 5.3 71 348-423 81-161 (224)
226 4b4t_J 26S protease regulatory 73.5 3.3 0.00011 41.9 5.0 54 100-156 143-199 (405)
227 1kgd_A CASK, peripheral plasma 73.5 1.5 5.2E-05 38.9 2.3 20 137-156 3-22 (180)
228 4b4t_L 26S protease subunit RP 73.2 2.4 8.2E-05 43.5 4.0 54 100-156 176-232 (437)
229 2qgz_A Helicase loader, putati 72.9 3.2 0.00011 40.5 4.7 19 139-157 152-170 (308)
230 3iij_A Coilin-interacting nucl 72.7 1.7 6E-05 38.3 2.5 22 136-157 8-29 (180)
231 1lv7_A FTSH; alpha/beta domain 72.4 3.8 0.00013 38.5 5.0 53 101-156 8-62 (257)
232 1p9r_A General secretion pathw 72.3 2.5 8.7E-05 43.2 3.9 18 138-155 166-183 (418)
233 3hjh_A Transcription-repair-co 72.2 3.7 0.00013 42.8 5.2 51 138-198 13-63 (483)
234 4b4t_H 26S protease regulatory 72.0 1.4 4.9E-05 45.4 1.9 53 101-156 205-260 (467)
235 2eyu_A Twitching motility prot 72.0 1.9 6.4E-05 41.1 2.7 21 136-156 22-42 (261)
236 2xxa_A Signal recognition part 71.7 20 0.0007 36.6 10.6 44 140-189 101-146 (433)
237 3ly5_A ATP-dependent RNA helic 71.6 20 0.00068 33.6 10.0 72 348-423 125-207 (262)
238 2v3c_C SRP54, signal recogniti 71.2 7.2 0.00025 40.0 7.1 18 140-157 100-117 (432)
239 4a2p_A RIG-I, retinoic acid in 71.0 9.1 0.00031 40.3 8.2 71 349-423 55-136 (556)
240 2oap_1 GSPE-2, type II secreti 70.7 1.7 5.7E-05 45.9 2.2 40 114-155 236-276 (511)
241 3i5x_A ATP-dependent RNA helic 70.6 34 0.0012 36.0 12.6 78 173-258 338-419 (563)
242 2x8a_A Nuclear valosin-contain 70.4 1 3.5E-05 43.2 0.5 53 101-156 6-61 (274)
243 2jgn_A DBX, DDX3, ATP-dependen 70.3 7.7 0.00026 34.4 6.3 72 173-255 45-120 (185)
244 1ixz_A ATP-dependent metallopr 69.8 2.1 7.2E-05 40.2 2.5 52 100-156 11-66 (254)
245 1tf7_A KAIC; homohexamer, hexa 69.2 17 0.0006 38.1 9.8 130 135-291 277-417 (525)
246 3a8t_A Adenylate isopentenyltr 69.0 2.2 7.6E-05 42.1 2.5 17 140-156 41-57 (339)
247 3exa_A TRNA delta(2)-isopenten 68.9 1.9 6.5E-05 42.1 2.0 17 140-156 4-20 (322)
248 2qor_A Guanylate kinase; phosp 68.3 2.4 8.1E-05 38.4 2.4 21 136-156 9-29 (204)
249 1qhx_A CPT, protein (chloramph 68.3 2.3 8E-05 37.3 2.3 18 139-156 3-20 (178)
250 3i32_A Heat resistant RNA depe 68.2 15 0.00052 35.4 8.4 71 174-255 28-102 (300)
251 3nbx_X ATPase RAVA; AAA+ ATPas 68.0 4.2 0.00014 42.6 4.5 34 122-155 24-57 (500)
252 2qmh_A HPR kinase/phosphorylas 67.9 2.7 9.4E-05 38.0 2.7 18 138-155 33-50 (205)
253 3vaa_A Shikimate kinase, SK; s 67.9 2.9 0.0001 37.6 3.0 20 138-157 24-43 (199)
254 2i4i_A ATP-dependent RNA helic 67.9 20 0.0007 35.9 9.8 72 173-255 275-350 (417)
255 2gza_A Type IV secretion syste 67.7 2.6 8.9E-05 42.2 2.8 20 136-155 172-191 (361)
256 3trf_A Shikimate kinase, SK; a 67.7 2.3 8E-05 37.6 2.2 19 139-157 5-23 (185)
257 3foz_A TRNA delta(2)-isopenten 67.7 2.2 7.4E-05 41.6 2.1 16 141-156 12-27 (316)
258 3tau_A Guanylate kinase, GMP k 67.3 3.1 0.0001 37.9 3.0 19 138-156 7-25 (208)
259 3sqw_A ATP-dependent RNA helic 67.2 44 0.0015 35.4 12.7 79 173-259 287-369 (579)
260 2j41_A Guanylate kinase; GMP, 67.1 2.5 8.5E-05 38.1 2.3 20 137-156 4-23 (207)
261 3nwn_A Kinesin-like protein KI 67.0 2.4 8.2E-05 42.3 2.3 25 132-156 96-122 (359)
262 2ius_A DNA translocase FTSK; n 66.9 6 0.0002 41.5 5.4 28 138-165 166-193 (512)
263 2bjv_A PSP operon transcriptio 66.8 3.3 0.00011 39.1 3.2 19 138-156 28-46 (265)
264 3hws_A ATP-dependent CLP prote 66.8 4.6 0.00016 40.2 4.5 19 138-156 50-68 (363)
265 2j37_W Signal recognition part 66.7 38 0.0013 35.3 11.5 42 141-189 103-146 (504)
266 4b4t_I 26S protease regulatory 66.6 8.1 0.00028 39.3 6.1 54 100-156 177-233 (437)
267 1f9v_A Kinesin-like protein KA 66.4 3.5 0.00012 40.9 3.4 26 131-156 75-102 (347)
268 2db3_A ATP-dependent RNA helic 66.2 18 0.00061 36.9 9.0 71 349-423 129-209 (434)
269 1zp6_A Hypothetical protein AT 66.1 2.2 7.5E-05 38.0 1.7 20 136-155 6-25 (191)
270 3t0q_A AGR253WP; kinesin, alph 65.9 3.4 0.00012 41.0 3.2 26 131-156 76-103 (349)
271 3ney_A 55 kDa erythrocyte memb 65.7 3.6 0.00012 37.2 3.1 20 137-156 17-36 (197)
272 3uk6_A RUVB-like 2; hexameric 65.7 7.2 0.00025 38.7 5.7 20 138-157 69-88 (368)
273 1lvg_A Guanylate kinase, GMP k 65.6 3.3 0.00011 37.3 2.8 19 138-156 3-21 (198)
274 1bg2_A Kinesin; motor protein, 65.5 2.8 9.5E-05 41.2 2.4 25 132-156 69-95 (325)
275 3lw7_A Adenylate kinase relate 65.2 2.5 8.6E-05 36.6 1.9 16 141-156 3-18 (179)
276 1u0j_A DNA replication protein 64.8 8.5 0.00029 36.5 5.6 43 112-157 74-122 (267)
277 2pt7_A CAG-ALFA; ATPase, prote 64.8 2.3 7.9E-05 42.0 1.7 19 137-155 169-187 (330)
278 1hv8_A Putative ATP-dependent 64.7 20 0.00068 35.0 8.8 71 348-423 73-153 (367)
279 1q0u_A Bstdead; DEAD protein, 64.5 11 0.00037 34.2 6.2 71 349-423 72-156 (219)
280 1iy2_A ATP-dependent metallopr 64.4 3.6 0.00012 39.3 3.0 54 100-156 35-90 (278)
281 3t15_A Ribulose bisphosphate c 64.4 2 6.9E-05 41.6 1.2 18 139-156 36-53 (293)
282 3dkp_A Probable ATP-dependent 63.9 7.9 0.00027 35.9 5.2 72 349-423 98-181 (245)
283 1kht_A Adenylate kinase; phosp 63.8 3 0.0001 36.9 2.2 18 139-156 3-20 (192)
284 1goj_A Kinesin, kinesin heavy 63.6 3.2 0.00011 41.3 2.5 24 133-156 73-98 (355)
285 2ewv_A Twitching motility prot 63.4 3.2 0.00011 41.7 2.5 21 136-156 133-153 (372)
286 3tbk_A RIG-I helicase domain; 63.4 10 0.00034 39.9 6.6 71 349-423 52-133 (555)
287 1y63_A LMAJ004144AAA protein; 63.3 3.3 0.00011 36.7 2.3 19 138-156 9-27 (184)
288 3dc4_A Kinesin-like protein NO 63.3 2.8 9.6E-05 41.5 2.0 24 133-156 87-112 (344)
289 1ofh_A ATP-dependent HSL prote 63.2 7.8 0.00027 37.2 5.3 19 138-156 49-67 (310)
290 2ze6_A Isopentenyl transferase 63.2 3.5 0.00012 38.8 2.6 16 141-156 3-18 (253)
291 2y65_A Kinesin, kinesin heavy 63.1 3.2 0.00011 41.4 2.4 24 133-156 77-102 (365)
292 1v8k_A Kinesin-like protein KI 63.0 3.4 0.00012 41.9 2.5 24 133-156 147-172 (410)
293 3b6u_A Kinesin-like protein KI 62.9 3.2 0.00011 41.6 2.3 25 132-156 93-119 (372)
294 3lre_A Kinesin-like protein KI 62.9 3.4 0.00012 41.1 2.5 25 132-156 97-123 (355)
295 2vvg_A Kinesin-2; motor protei 62.9 3.3 0.00011 41.1 2.4 24 133-156 82-107 (350)
296 1wp9_A ATP-dependent RNA helic 62.8 19 0.00063 36.7 8.4 72 347-423 50-131 (494)
297 1ojl_A Transcriptional regulat 62.7 3.4 0.00012 40.2 2.5 20 137-156 23-42 (304)
298 2h58_A Kinesin-like protein KI 62.6 3.4 0.00012 40.7 2.4 25 132-156 72-98 (330)
299 4a14_A Kinesin, kinesin-like p 62.5 3.4 0.00012 41.0 2.4 25 132-156 75-101 (344)
300 1kag_A SKI, shikimate kinase I 62.5 3.5 0.00012 35.9 2.3 18 139-156 4-21 (173)
301 4etp_A Kinesin-like protein KA 62.5 3.3 0.00011 42.0 2.4 25 132-156 132-158 (403)
302 3a00_A Guanylate kinase, GMP k 62.2 3.5 0.00012 36.6 2.3 17 140-156 2-18 (186)
303 2nr8_A Kinesin-like protein KI 62.1 3.4 0.00012 41.2 2.3 25 132-156 95-121 (358)
304 3tr0_A Guanylate kinase, GMP k 61.8 4.5 0.00015 36.3 3.0 19 138-156 6-24 (205)
305 4gp7_A Metallophosphoesterase; 61.8 3 0.0001 36.5 1.8 20 138-157 8-27 (171)
306 1rj9_A FTSY, signal recognitio 61.8 7.7 0.00026 37.7 4.8 27 138-166 101-127 (304)
307 3b9p_A CG5977-PA, isoform A; A 61.7 3.3 0.00011 39.9 2.1 53 101-156 17-71 (297)
308 1t5c_A CENP-E protein, centrom 61.7 3.5 0.00012 41.0 2.3 24 133-156 70-95 (349)
309 2px0_A Flagellar biosynthesis 61.7 7.9 0.00027 37.4 4.9 20 138-157 104-123 (296)
310 1fuu_A Yeast initiation factor 61.6 17 0.00057 36.1 7.6 71 348-423 88-168 (394)
311 2zfi_A Kinesin-like protein KI 61.6 3.6 0.00012 41.2 2.4 25 132-156 81-107 (366)
312 1x88_A Kinesin-like protein KI 61.6 3.4 0.00012 41.2 2.2 25 132-156 80-106 (359)
313 3gbj_A KIF13B protein; kinesin 61.5 3.5 0.00012 41.0 2.3 25 132-156 84-110 (354)
314 3bfn_A Kinesin-like protein KI 61.3 3.4 0.00012 41.5 2.2 22 135-156 93-116 (388)
315 3cob_A Kinesin heavy chain-lik 61.3 3.1 0.00011 41.6 1.9 25 132-156 71-97 (369)
316 1s2m_A Putative ATP-dependent 61.3 35 0.0012 33.9 10.0 72 348-423 88-169 (400)
317 3fmo_B ATP-dependent RNA helic 61.2 5.9 0.0002 38.4 3.9 68 349-423 162-241 (300)
318 3jvv_A Twitching mobility prot 60.8 3.8 0.00013 40.9 2.5 19 138-156 122-140 (356)
319 4f4c_A Multidrug resistance pr 60.7 16 0.00054 43.3 8.1 40 248-288 1234-1273(1321)
320 2rep_A Kinesin-like protein KI 60.5 4 0.00014 40.9 2.6 25 132-156 107-133 (376)
321 3u06_A Protein claret segregat 60.4 3.5 0.00012 42.0 2.1 25 132-156 130-156 (412)
322 3fht_A ATP-dependent RNA helic 60.4 24 0.00082 35.2 8.6 71 174-255 266-340 (412)
323 2heh_A KIF2C protein; kinesin, 60.4 3.8 0.00013 41.2 2.3 24 133-156 127-152 (387)
324 3crm_A TRNA delta(2)-isopenten 60.2 4.2 0.00014 39.8 2.6 16 141-156 7-22 (323)
325 2j0s_A ATP-dependent RNA helic 59.9 43 0.0015 33.3 10.4 85 335-423 87-185 (410)
326 3kb2_A SPBC2 prophage-derived 59.7 3.7 0.00013 35.6 1.9 16 141-156 3-18 (173)
327 4eun_A Thermoresistant glucoki 59.6 4.1 0.00014 36.6 2.3 19 138-156 28-46 (200)
328 1ly1_A Polynucleotide kinase; 59.5 3.7 0.00013 35.9 1.9 16 141-156 4-19 (181)
329 1ex7_A Guanylate kinase; subst 59.5 4.3 0.00015 36.3 2.3 16 140-155 2-17 (186)
330 2d7d_A Uvrabc system protein B 59.3 1E+02 0.0035 33.2 13.8 78 173-261 444-525 (661)
331 4a2q_A RIG-I, retinoic acid in 59.2 17 0.00059 40.4 7.8 71 349-423 296-377 (797)
332 1s96_A Guanylate kinase, GMP k 59.2 4.2 0.00014 37.4 2.3 21 136-156 13-33 (219)
333 2wbe_C Bipolar kinesin KRP-130 59.2 3.6 0.00012 41.2 2.0 25 132-156 92-118 (373)
334 1z6g_A Guanylate kinase; struc 59.2 5.5 0.00019 36.5 3.1 20 137-156 21-40 (218)
335 2v6i_A RNA helicase; membrane, 59.1 12 0.0004 38.3 5.9 54 174-232 171-225 (431)
336 2qt1_A Nicotinamide riboside k 58.8 4.6 0.00016 36.5 2.5 25 132-156 14-38 (207)
337 1u94_A RECA protein, recombina 58.7 9.1 0.00031 38.1 4.8 40 136-182 60-99 (356)
338 2c9o_A RUVB-like 1; hexameric 58.6 11 0.00039 38.8 5.8 48 102-157 34-81 (456)
339 3pey_A ATP-dependent RNA helic 58.6 54 0.0018 32.2 10.8 76 173-259 242-321 (395)
340 3bgw_A DNAB-like replicative h 58.5 10 0.00035 39.0 5.3 41 135-182 193-233 (444)
341 3d3q_A TRNA delta(2)-isopenten 58.5 4.8 0.00016 39.8 2.6 16 141-156 9-24 (340)
342 2r44_A Uncharacterized protein 58.3 3.7 0.00013 40.3 1.9 24 133-156 40-63 (331)
343 2iut_A DNA translocase FTSK; n 58.2 10 0.00036 40.1 5.3 40 251-290 345-387 (574)
344 1znw_A Guanylate kinase, GMP k 58.2 4.5 0.00016 36.6 2.3 22 135-156 16-37 (207)
345 1knq_A Gluconate kinase; ALFA/ 58.1 3.8 0.00013 35.8 1.7 19 138-156 7-25 (175)
346 2z43_A DNA repair and recombin 58.1 10 0.00034 37.1 5.0 58 137-195 105-163 (324)
347 1m7g_A Adenylylsulfate kinase; 58.0 5.8 0.0002 36.0 3.0 32 125-157 12-43 (211)
348 3cm0_A Adenylate kinase; ATP-b 57.9 3.3 0.00011 36.6 1.3 20 138-157 3-22 (186)
349 1yks_A Genome polyprotein [con 57.8 12 0.0004 38.4 5.7 68 174-254 177-245 (440)
350 2zr9_A Protein RECA, recombina 57.8 9.3 0.00032 37.9 4.7 41 135-182 57-97 (349)
351 1gku_B Reverse gyrase, TOP-RG; 57.6 23 0.0008 40.8 8.6 74 348-423 98-181 (1054)
352 2owm_A Nckin3-434, related to 57.5 4.6 0.00016 41.5 2.4 25 132-156 128-154 (443)
353 3gk5_A Uncharacterized rhodane 57.2 8.6 0.00029 30.6 3.6 38 348-385 54-91 (108)
354 2r8r_A Sensor protein; KDPD, P 56.7 11 0.00036 34.8 4.5 20 141-160 8-27 (228)
355 1wv9_A Rhodanese homolog TT165 56.6 11 0.00038 29.0 4.1 35 350-384 54-88 (94)
356 3eph_A TRNA isopentenyltransfe 56.6 5.1 0.00017 40.5 2.5 16 141-156 4-19 (409)
357 3b9q_A Chloroplast SRP recepto 56.5 8.8 0.0003 37.2 4.2 27 138-166 99-125 (302)
358 3lnc_A Guanylate kinase, GMP k 55.9 5.4 0.00019 36.7 2.5 21 136-156 24-44 (231)
359 1c4o_A DNA nucleotide excision 55.9 76 0.0026 34.3 12.0 78 173-261 438-519 (664)
360 3cmw_A Protein RECA, recombina 55.8 9.8 0.00033 45.8 5.1 124 138-295 1430-1571(1706)
361 2v54_A DTMP kinase, thymidylat 55.7 5.1 0.00017 35.9 2.2 19 138-156 3-21 (204)
362 3nwj_A ATSK2; P loop, shikimat 55.5 6.2 0.00021 37.1 2.8 22 136-157 45-66 (250)
363 2cdn_A Adenylate kinase; phosp 55.3 5.6 0.00019 35.7 2.4 19 138-156 19-37 (201)
364 3eiq_A Eukaryotic initiation f 55.0 53 0.0018 32.6 10.1 73 348-423 107-189 (414)
365 1tev_A UMP-CMP kinase; ploop, 54.6 4.6 0.00016 35.7 1.7 19 139-157 3-21 (196)
366 3vkg_A Dynein heavy chain, cyt 54.5 7.8 0.00027 49.6 4.1 49 109-157 873-924 (3245)
367 3b6e_A Interferon-induced heli 54.1 12 0.0004 33.6 4.5 55 349-407 82-140 (216)
368 3t61_A Gluconokinase; PSI-biol 53.4 5.3 0.00018 35.9 1.9 17 140-156 19-35 (202)
369 3c8u_A Fructokinase; YP_612366 53.4 5.4 0.00019 36.1 2.0 19 138-156 21-39 (208)
370 3iwh_A Rhodanese-like domain p 53.3 10 0.00035 30.0 3.4 37 348-384 55-91 (103)
371 2fsf_A Preprotein translocase 53.2 38 0.0013 37.6 8.8 84 334-423 99-200 (853)
372 1sxj_C Activator 1 40 kDa subu 53.2 1.1E+02 0.0038 29.6 11.8 17 141-157 48-64 (340)
373 1gvn_B Zeta; postsegregational 53.0 5.6 0.00019 38.3 2.1 18 139-156 33-50 (287)
374 2rhm_A Putative kinase; P-loop 52.9 5.2 0.00018 35.4 1.8 18 139-156 5-22 (193)
375 4dzz_A Plasmid partitioning pr 52.5 20 0.00068 31.8 5.7 32 225-260 55-86 (206)
376 1zuh_A Shikimate kinase; alpha 52.5 6 0.00021 34.2 2.1 18 140-157 8-25 (168)
377 2c95_A Adenylate kinase 1; tra 52.5 6 0.00021 35.1 2.1 19 138-156 8-26 (196)
378 2bdt_A BH3686; alpha-beta prot 52.5 5.7 0.00019 35.2 1.9 16 141-156 4-19 (189)
379 1um8_A ATP-dependent CLP prote 52.4 7.7 0.00026 38.8 3.1 20 138-157 71-90 (376)
380 1ry6_A Internal kinesin; kines 52.1 6 0.00021 39.4 2.2 19 138-156 82-102 (360)
381 1tf5_A Preprotein translocase 52.0 43 0.0015 37.1 9.0 84 334-423 108-209 (844)
382 2r2a_A Uncharacterized protein 51.9 8.4 0.00029 34.8 3.0 17 141-157 7-23 (199)
383 4fcw_A Chaperone protein CLPB; 51.9 5.5 0.00019 38.4 1.9 17 141-157 49-65 (311)
384 3eme_A Rhodanese-like domain p 51.8 11 0.00036 29.6 3.3 37 348-384 55-91 (103)
385 3uie_A Adenylyl-sulfate kinase 51.7 7.2 0.00024 35.0 2.5 31 125-156 12-42 (200)
386 1nij_A Hypothetical protein YJ 51.4 13 0.00044 36.2 4.5 14 142-155 7-20 (318)
387 2og2_A Putative signal recogni 51.3 12 0.0004 37.3 4.2 27 138-166 156-182 (359)
388 3foj_A Uncharacterized protein 51.3 11 0.00038 29.3 3.3 37 348-384 55-91 (100)
389 1ak2_A Adenylate kinase isoenz 51.1 8.6 0.00029 35.4 3.0 20 138-157 15-34 (233)
390 3u4q_B ATP-dependent helicase/ 51.1 11 0.00039 44.0 4.7 33 349-381 342-375 (1166)
391 4f4c_A Multidrug resistance pr 51.0 8.8 0.0003 45.5 3.8 32 247-278 570-601 (1321)
392 3tif_A Uncharacterized ABC tra 50.7 7 0.00024 36.3 2.3 19 137-155 29-47 (235)
393 3hix_A ALR3790 protein; rhodan 50.6 14 0.00049 29.1 3.9 38 348-385 51-89 (106)
394 2r62_A Cell division protease 50.5 3.7 0.00013 38.8 0.4 19 139-157 44-62 (268)
395 3fb4_A Adenylate kinase; psych 50.2 6.4 0.00022 35.7 1.9 17 141-157 2-18 (216)
396 4a74_A DNA repair and recombin 50.2 7.4 0.00025 35.5 2.4 23 135-157 21-43 (231)
397 1aky_A Adenylate kinase; ATP:A 50.1 7.3 0.00025 35.5 2.3 19 139-157 4-22 (220)
398 2pez_A Bifunctional 3'-phospho 49.9 6.3 0.00022 34.5 1.8 19 138-156 4-22 (179)
399 3f9v_A Minichromosome maintena 49.9 8.2 0.00028 41.4 3.0 15 141-155 329-343 (595)
400 1zd8_A GTP:AMP phosphotransfer 49.9 6.9 0.00024 35.9 2.1 18 139-156 7-24 (227)
401 1f2t_A RAD50 ABC-ATPase; DNA d 49.8 6.9 0.00023 33.4 1.9 15 141-155 25-39 (149)
402 1g8p_A Magnesium-chelatase 38 49.7 5.2 0.00018 39.4 1.3 18 139-156 45-62 (350)
403 1via_A Shikimate kinase; struc 49.7 7.2 0.00025 34.0 2.1 17 141-157 6-22 (175)
404 1v5w_A DMC1, meiotic recombina 49.5 15 0.00053 36.1 4.8 46 138-184 121-166 (343)
405 3asz_A Uridine kinase; cytidin 49.4 6.2 0.00021 35.6 1.7 18 139-156 6-23 (211)
406 1nks_A Adenylate kinase; therm 49.4 6.5 0.00022 34.6 1.8 16 141-156 3-18 (194)
407 1tue_A Replication protein E1; 49.4 7.5 0.00026 35.3 2.2 17 140-156 59-75 (212)
408 2plr_A DTMP kinase, probable t 49.3 6.5 0.00022 35.3 1.8 19 138-156 3-21 (213)
409 3qf7_A RAD50; ABC-ATPase, ATPa 49.0 6.6 0.00022 39.3 1.9 17 141-157 25-41 (365)
410 1zak_A Adenylate kinase; ATP:A 49.0 7.6 0.00026 35.4 2.3 19 139-157 5-23 (222)
411 2iyv_A Shikimate kinase, SK; t 48.8 8 0.00027 33.9 2.3 18 140-157 3-20 (184)
412 4akg_A Glutathione S-transfera 48.4 13 0.00046 47.0 4.9 49 109-158 890-942 (2695)
413 3dl0_A Adenylate kinase; phosp 48.4 7.1 0.00024 35.4 1.9 16 141-156 2-17 (216)
414 3kta_A Chromosome segregation 48.2 7.1 0.00024 34.2 1.8 16 141-156 28-43 (182)
415 1e6c_A Shikimate kinase; phosp 48.0 7.4 0.00025 33.6 1.9 17 140-156 3-19 (173)
416 2bwj_A Adenylate kinase 5; pho 47.9 7.7 0.00026 34.4 2.1 18 139-156 12-29 (199)
417 1zu4_A FTSY; GTPase, signal re 47.8 15 0.0005 35.9 4.2 20 138-157 104-123 (320)
418 1qf9_A UMP/CMP kinase, protein 47.8 7.2 0.00025 34.3 1.9 16 141-156 8-23 (194)
419 2z0m_A 337AA long hypothetical 47.7 61 0.0021 31.0 8.9 70 349-423 56-135 (337)
420 2cbz_A Multidrug resistance-as 47.6 8.4 0.00029 35.8 2.3 19 137-155 29-47 (237)
421 2yvu_A Probable adenylyl-sulfa 47.4 7.3 0.00025 34.4 1.8 20 138-157 12-31 (186)
422 2v9p_A Replication protein E1; 47.3 10 0.00036 36.7 3.0 21 136-156 123-143 (305)
423 2wwf_A Thymidilate kinase, put 47.3 8.7 0.0003 34.5 2.4 21 137-157 8-28 (212)
424 2vli_A Antibiotic resistance p 47.3 7.4 0.00025 34.0 1.8 19 139-157 5-23 (183)
425 1ye8_A Protein THEP1, hypothet 47.0 10 0.00036 33.3 2.8 16 141-156 2-17 (178)
426 1in4_A RUVB, holliday junction 46.9 9.9 0.00034 37.3 2.9 18 140-157 52-69 (334)
427 3g5j_A Putative ATP/GTP bindin 46.6 25 0.00086 28.7 5.0 36 350-385 90-126 (134)
428 1ukz_A Uridylate kinase; trans 46.4 8 0.00027 34.6 1.9 16 141-156 17-32 (203)
429 3umf_A Adenylate kinase; rossm 46.1 10 0.00036 34.7 2.7 20 138-157 28-47 (217)
430 1sgw_A Putative ABC transporte 46.1 9.5 0.00033 34.8 2.4 20 136-155 32-51 (214)
431 2i3b_A HCR-ntpase, human cance 46.0 12 0.0004 33.4 2.9 42 247-292 103-146 (189)
432 1cke_A CK, MSSA, protein (cyti 45.9 10 0.00035 34.5 2.6 18 140-157 6-23 (227)
433 2jaq_A Deoxyguanosine kinase; 45.8 8.2 0.00028 34.4 1.9 16 141-156 2-17 (205)
434 2if2_A Dephospho-COA kinase; a 45.6 8.1 0.00028 34.6 1.8 16 141-156 3-18 (204)
435 2fz4_A DNA repair protein RAD2 45.5 61 0.0021 29.7 8.0 59 335-407 120-179 (237)
436 2pt5_A Shikimate kinase, SK; a 45.3 8.6 0.00029 33.0 1.9 16 141-156 2-17 (168)
437 1jjv_A Dephospho-COA kinase; P 45.1 8.6 0.00029 34.5 1.9 16 141-156 4-19 (206)
438 1nn5_A Similar to deoxythymidy 44.9 9.5 0.00033 34.3 2.2 20 138-157 8-27 (215)
439 2ff7_A Alpha-hemolysin translo 44.7 9.8 0.00033 35.6 2.3 19 137-155 33-51 (247)
440 2pze_A Cystic fibrosis transme 44.7 9.8 0.00034 35.1 2.3 19 137-155 32-50 (229)
441 1xjc_A MOBB protein homolog; s 44.5 21 0.00073 31.1 4.3 15 141-155 6-20 (169)
442 2ghi_A Transport protein; mult 44.4 10 0.00034 35.9 2.3 19 137-155 44-62 (260)
443 3gfo_A Cobalt import ATP-bindi 44.3 9.7 0.00033 36.3 2.2 19 137-155 32-50 (275)
444 1g41_A Heat shock protein HSLU 44.3 10 0.00034 39.0 2.4 18 139-156 50-67 (444)
445 3be4_A Adenylate kinase; malar 44.0 9.7 0.00033 34.6 2.1 18 139-156 5-22 (217)
446 1gmx_A GLPE protein; transfera 44.0 20 0.00067 28.3 3.8 38 348-385 57-95 (108)
447 1nkt_A Preprotein translocase 44.0 60 0.002 36.2 8.6 72 346-423 149-237 (922)
448 2pbr_A DTMP kinase, thymidylat 43.6 9.4 0.00032 33.6 1.9 15 142-156 3-17 (195)
449 3tlx_A Adenylate kinase 2; str 43.5 9.4 0.00032 35.5 2.0 20 138-157 28-47 (243)
450 2z0h_A DTMP kinase, thymidylat 43.4 9.5 0.00033 33.7 1.9 16 142-157 3-18 (197)
451 3a4m_A L-seryl-tRNA(SEC) kinas 43.4 9.3 0.00032 36.0 1.9 18 140-157 5-22 (260)
452 3sr0_A Adenylate kinase; phosp 43.3 12 0.00042 33.9 2.6 17 141-157 2-18 (206)
453 1e4v_A Adenylate kinase; trans 43.2 9.3 0.00032 34.6 1.9 16 141-156 2-17 (214)
454 2pcj_A ABC transporter, lipopr 43.2 10 0.00035 34.8 2.2 19 137-155 28-46 (224)
455 2bbw_A Adenylate kinase 4, AK4 43.0 10 0.00036 35.2 2.2 18 139-156 27-44 (246)
456 4g1u_C Hemin import ATP-bindin 42.8 11 0.00037 35.8 2.3 19 137-155 35-53 (266)
457 3pxg_A Negative regulator of g 42.8 11 0.00037 39.1 2.5 20 138-157 200-219 (468)
458 1ji0_A ABC transporter; ATP bi 42.4 11 0.00038 35.0 2.3 19 137-155 30-48 (240)
459 1g6h_A High-affinity branched- 42.3 11 0.00038 35.4 2.3 19 137-155 31-49 (257)
460 2p5t_B PEZT; postsegregational 42.2 7.9 0.00027 36.3 1.2 19 138-156 31-49 (253)
461 3auy_A DNA double-strand break 42.2 9.4 0.00032 38.2 1.8 15 142-156 28-42 (371)
462 1b0u_A Histidine permease; ABC 42.1 11 0.00039 35.5 2.3 19 137-155 30-48 (262)
463 3flh_A Uncharacterized protein 42.1 17 0.00058 29.6 3.2 37 349-385 71-109 (124)
464 1mv5_A LMRA, multidrug resista 42.0 9.7 0.00033 35.5 1.8 19 137-155 26-44 (243)
465 4e22_A Cytidylate kinase; P-lo 42.0 14 0.00048 34.5 3.0 19 138-156 26-44 (252)
466 2ykg_A Probable ATP-dependent 41.9 38 0.0013 36.8 6.9 70 350-423 62-142 (696)
467 4h1g_A Maltose binding protein 41.8 9.9 0.00034 41.8 2.1 25 132-156 454-480 (715)
468 2xb4_A Adenylate kinase; ATP-b 41.8 10 0.00035 34.7 1.9 16 141-156 2-17 (223)
469 2ipc_A Preprotein translocase 41.6 65 0.0022 36.1 8.3 68 334-407 104-176 (997)
470 2fsx_A RV0390, COG0607: rhodan 41.3 27 0.00093 29.4 4.5 37 348-384 79-116 (148)
471 2wv9_A Flavivirin protease NS2 41.2 23 0.00079 38.5 4.9 68 174-254 410-478 (673)
472 1vpl_A ABC transporter, ATP-bi 41.0 12 0.00041 35.2 2.3 19 137-155 39-57 (256)
473 1tf7_A KAIC; homohexamer, hexa 40.9 20 0.00067 37.7 4.2 32 135-166 35-66 (525)
474 2xau_A PRE-mRNA-splicing facto 40.9 48 0.0016 36.7 7.5 75 174-255 303-393 (773)
475 4ag6_A VIRB4 ATPase, type IV s 40.9 19 0.00066 36.1 4.0 39 250-288 263-304 (392)
476 2qi9_C Vitamin B12 import ATP- 40.9 12 0.00042 35.0 2.3 19 137-155 24-42 (249)
477 1rz3_A Hypothetical protein rb 40.7 11 0.00037 33.8 1.8 18 139-156 22-39 (201)
478 2nq2_C Hypothetical ABC transp 40.6 12 0.00042 35.1 2.3 19 137-155 29-47 (253)
479 2ixe_A Antigen peptide transpo 40.6 12 0.00042 35.5 2.3 19 137-155 43-61 (271)
480 3l9o_A ATP-dependent RNA helic 40.5 34 0.0012 39.6 6.4 65 348-423 226-296 (1108)
481 2f1r_A Molybdopterin-guanine d 40.3 7.2 0.00025 34.2 0.6 16 141-156 4-19 (171)
482 2yz2_A Putative ABC transporte 40.3 13 0.00043 35.3 2.3 19 137-155 31-49 (266)
483 2ce7_A Cell division protein F 40.2 11 0.00038 39.1 2.0 52 102-156 13-66 (476)
484 3fkq_A NTRC-like two-domain pr 40.0 46 0.0016 33.0 6.6 16 144-159 149-164 (373)
485 1uf9_A TT1252 protein; P-loop, 39.9 14 0.00048 32.8 2.5 16 141-156 10-25 (203)
486 3hjh_A Transcription-repair-co 39.9 1.3E+02 0.0044 31.0 10.1 85 325-410 16-113 (483)
487 1vht_A Dephospho-COA kinase; s 39.8 11 0.00039 34.0 1.9 16 141-156 6-21 (218)
488 3nh6_A ATP-binding cassette SU 39.7 9.7 0.00033 37.0 1.4 19 137-155 78-96 (306)
489 2d2e_A SUFC protein; ABC-ATPas 39.7 16 0.00056 34.1 3.0 19 137-155 27-45 (250)
490 1htw_A HI0065; nucleotide-bind 39.6 15 0.00052 31.6 2.6 19 137-155 31-49 (158)
491 1qxn_A SUD, sulfide dehydrogen 39.6 26 0.00089 29.1 4.0 38 348-385 81-119 (137)
492 2olj_A Amino acid ABC transpor 39.6 13 0.00045 35.1 2.3 18 138-155 49-66 (263)
493 2zu0_C Probable ATP-dependent 39.6 16 0.00056 34.5 3.0 19 137-155 44-62 (267)
494 3nzo_A UDP-N-acetylglucosamine 39.3 1.2E+02 0.0042 30.1 9.8 91 131-233 27-121 (399)
495 2ihy_A ABC transporter, ATP-bi 39.3 13 0.00045 35.5 2.3 19 137-155 45-63 (279)
496 1q57_A DNA primase/helicase; d 39.2 15 0.0005 38.5 2.8 53 135-194 238-290 (503)
497 3zyw_A Glutaredoxin-3; metal b 39.1 95 0.0032 24.5 7.2 45 349-393 15-65 (111)
498 1c9k_A COBU, adenosylcobinamid 39.1 29 0.00099 30.6 4.3 33 142-185 2-34 (180)
499 2vhj_A Ntpase P4, P4; non- hyd 39.0 14 0.00049 36.0 2.5 27 136-162 120-146 (331)
500 1odf_A YGR205W, hypothetical 3 38.3 12 0.00042 35.9 1.9 15 142-156 34-48 (290)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.8e-63 Score=523.42 Aligned_cols=368 Identities=30% Similarity=0.506 Sum_probs=326.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhccc-CCCCCcEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQF-APRNGTGVI 178 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~-~~~~~~~~l 178 (591)
+..+|++++|++.++++|.++||..|||+|+++||.+++|+|++++||||||||++|++|+++.+..... ....++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999887532 123467899
Q ss_pred EEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 179 VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
||+|||+||.|+++.+.+++...+..+..++||.....+...+..+++|+|+||++|++++.... +.+.++++||||||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~lVlDEa 212 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVVLDEA 212 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-CCCTTCCEEEEETH
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC-cccccCCeEEEccH
Confidence 99999999999999999999888889999999999888888888899999999999999998765 67899999999999
Q ss_pred hhhhccccHHHHHHHHHhCC-CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH
Q 007743 259 DRILEANFEEEMRQIMKLLP-KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337 (591)
Q Consensus 259 h~l~~~~f~~~~~~i~~~l~-~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 337 (591)
|+|++++|...+..|+..+. ...+|+++||||++..+..++..++. .+..+.+... ......+.+.+..+....+.
T Consensus 213 h~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 213 DRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLK-NYVFVAIGIV--GGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp HHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCS-SCEEEEESST--TCCCTTEEEEEEECCGGGHH
T ss_pred hhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhcc-CCEEEEeccc--cccccccceEEEEeCcHHHH
Confidence 99999999999999998863 23789999999999999999987776 4777776542 33456788888888888899
Q ss_pred HHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 338 ~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
..|..++..... ++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||++++||||+|+
T Consensus 290 ~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~ 368 (434)
T 2db3_A 290 SKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKN 368 (434)
T ss_dssp HHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCccc
Confidence 999999887654 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChh-hHH----HHHHHHHcCCCcc
Q 007743 418 VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE-ELQ----FLRYLKAAKVPVK 473 (591)
Q Consensus 418 v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~-e~~----~~~~l~~~~~~~~ 473 (591)
|++||+||+|.++.+|+||+|||||+| ..|.+++|++++ +.. ..+.+...+.++.
T Consensus 369 v~~VI~~d~p~~~~~y~qriGR~gR~g-~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 369 IKHVINYDMPSKIDDYVHRIGRTGRVG-NNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSSCTT-CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred CCEEEEECCCCCHHHHHHHhcccccCC-CCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999975 689999999964 433 3445555555544
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-58 Score=488.50 Aligned_cols=361 Identities=31% Similarity=0.474 Sum_probs=318.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccC---------
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA--------- 170 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~--------- 170 (591)
+..+|++++|++.+.++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+......
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999988754211
Q ss_pred -----CCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC
Q 007743 171 -----PRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF 245 (591)
Q Consensus 171 -----~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~ 245 (591)
...++++|||+||++||.|+++.+..+....+..+..++||.........+..+++|+|+||++|.+++.... +
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~ 171 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-I 171 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-B
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC-c
Confidence 1234679999999999999999999998888899999999998888888888889999999999999998765 6
Q ss_pred ccCCceEEEEeCchhhhccccHHHHHHHHHhC--C-CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccC
Q 007743 246 IYKNLKCLVIDEADRILEANFEEEMRQIMKLL--P-KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNE 322 (591)
Q Consensus 246 ~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l--~-~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 322 (591)
.+.++++||+||||++++.+|...+..++... + ....|++++|||++..+..+....+.. +..+.+.. ......
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ 248 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE-YIFLAVGR--VGSTSE 248 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSS-CEEEEEC------CCS
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCC-CEEEEeCC--CCCCcc
Confidence 68899999999999999999999999998753 2 235799999999999998888877654 66665543 233456
Q ss_pred CceeEEEecCchhHHHHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCcc
Q 007743 323 GLQQGYCVVPSAKRFILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401 (591)
Q Consensus 323 ~l~~~~~~~~~~~k~~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~ 401 (591)
.+.+.+..+....+...+..++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 6788888888888999999999875 477899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 402 vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||.| ..|.|++|+++.+...++.+
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDL 391 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC-CCceEEEEEccccHHHHHHH
Confidence 9999999999999999999999999999999999999999975 67999999999887665554
No 3
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.7e-59 Score=512.66 Aligned_cols=429 Identities=30% Similarity=0.490 Sum_probs=335.8
Q ss_pred ccccCC----CCHHHHHHHHHCCCCCCcHHHHHhhcccc--CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcE
Q 007743 103 SFDSLG----LSQHTFRAIQDMGFQFMTQIQARAVPPLM--VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTG 176 (591)
Q Consensus 103 ~f~~l~----l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 176 (591)
+|+++. |++.++++|..+||..|||+|.++|+.++ .|+|++++||||||||++|++|+++.+.........+.+
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 97 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK 97 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCC
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCe
Confidence 455543 99999999999999999999999999999 789999999999999999999999999876554455678
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhh----cCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCce
Q 007743 177 VIVICPTRELAIQTHAVAKDLLKY----HSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLK 251 (591)
Q Consensus 177 ~lil~PtreLa~q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~ 251 (591)
+|||+||++||.|+++.+..+... ....+..++||.........+. .+++|+|+||++|++++.......+..++
T Consensus 98 ~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~ 177 (579)
T 3sqw_A 98 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVD 177 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCC
Confidence 999999999999999999998743 3467888899988777766664 47999999999999998765334578899
Q ss_pred EEEEeCchhhhccccHHHHHHHHHhCCC------CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC--CCcccccCC
Q 007743 252 CLVIDEADRILEANFEEEMRQIMKLLPK------KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD--GRTKVTNEG 323 (591)
Q Consensus 252 ~lVlDEah~l~~~~f~~~~~~i~~~l~~------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~--~~~~~~~~~ 323 (591)
+|||||||+|++++|.+.+..|+..++. ...|+++||||+++.+..++...+.. +..+.+.. .........
T Consensus 178 ~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 256 (579)
T 3sqw_A 178 YKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNEPEAHER 256 (579)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSSCSSCTT
T ss_pred EEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCC-CceEEEeecCccccccccc
Confidence 9999999999999999999999877643 25799999999999999888877654 44444322 222334445
Q ss_pred ceeEEEecCch-hHH----HHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHc---CCCeEeccCccCHHHHHHHHHH
Q 007743 324 LQQGYCVVPSA-KRF----ILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFD 394 (591)
Q Consensus 324 l~~~~~~~~~~-~k~----~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~R~~~~~~ 394 (591)
+.+.+...... .+. ..+...+.. ....++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.
T Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~ 336 (579)
T 3sqw_A 257 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 336 (579)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred cceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHH
Confidence 66666555432 222 223333333 45789999999999999999999987 8999999999999999999999
Q ss_pred hhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCcc
Q 007743 395 FCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVK 473 (591)
Q Consensus 395 F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~ 473 (591)
|++|+..|||||+++++|||+|+|++||+|++|.++..|+||+|||||.| ..|.|++|+++.|..+++.+.+ .++++.
T Consensus 337 F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 337 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAKNIVIA 415 (579)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred hhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCC-CCceEEEEEcccHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999975 6899999999999999999865 345554
Q ss_pred ccccChHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHhcCcCccccccCCcC-HHHHHHHcCC
Q 007743 474 EYEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLD-LQAVAASFCF 539 (591)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~-~~~l~~~~g~ 539 (591)
........ ......+.+.+..... ....++.+++..|.+.. ..+..+..| +..+|..||+
T Consensus 416 ~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 476 (579)
T 3sqw_A 416 KQEKYEPS-EEIKSEVLEAVTEEPE---DISDIVISLISSYRSCI--KEYRFSERRILPEIASTYGV 476 (579)
T ss_dssp EEEEECCC-HHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHH--HHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCcc-HHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHH--HHhCCCcccHHHHHHHHHHH
Confidence 33221111 1233333333333322 23455566666666532 233444454 4788888874
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-58 Score=486.37 Aligned_cols=367 Identities=29% Similarity=0.513 Sum_probs=325.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+... ..+.++||+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil 111 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----VRETQALIL 111 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----SCSCCEEEE
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----cCCceEEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999876321 246789999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||++|+.|+++.+..++...+..+..++||.........+..+++|+|+||++|.+++.... +.+.++++||+||||+
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~-~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS-LRTRAIKMLVLDEADE 190 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHHH
T ss_pred cCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC-ccHhheeEEEEccHHH
Confidence 999999999999999999888999999999998888878888889999999999999998764 6678999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh-HHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFIL 339 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-k~~~ 339 (591)
+++.+|...+..++..++. ..|++++|||++..+..+....+.. |..+.+.. .......+.+.+..+.... +...
T Consensus 191 ~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPP-ATQVVLISATLPHEILEMTNKFMTD-PIRILVKR--DELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCT-TCEEEEEESCCCHHHHTTGGGTCSS-CEEECCCG--GGCSCTTEEEEEEEESSTTHHHHH
T ss_pred HHhhhhHHHHHHHHHhCcc-CceEEEEEcCCCHHHHHHHHHHcCC-CEEEEecC--ccccCCCceEEEEEeCcHHhHHHH
Confidence 9999999999999998886 8999999999999888777765543 66554432 3344556777777666544 8888
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 88888887788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCcccccc
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEF 477 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~ 477 (591)
+||+||+|.++..|+||+||+||.| ..|.+++|+.+.+...++.+.. .+..++.+..
T Consensus 347 ~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 347 LIINYDLPNNRELYIHRIGRSGRYG-RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred EEEEECCCCCHHHHHHhcccccCCC-CceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 9999999999999999999999975 6899999999999999888854 4555555543
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.8e-58 Score=504.01 Aligned_cols=428 Identities=30% Similarity=0.490 Sum_probs=332.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhhcccc--CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 108 GLSQHTFRAIQDMGFQFMTQIQARAVPPLM--VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 108 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
.|++.++++|..+||..|||+|.++|+.++ .++|++++||||||||++|++|+++.+.........+.++|||+||++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 399999999999999999999999999999 678999999999999999999999999886554445678999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCeEEEEEcCccchHHHHHH-hcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 186 LAIQTHAVAKDLLKY----HSQTVGLVIGGSARRGEAERI-VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 186 La~q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l-~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
||.|+++.+..+... ....+..++||.........+ ..+++|+|+||++|++++.......++.+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999998653 245688888988877776665 447999999999999998765334578899999999999
Q ss_pred hhccccHHHHHHHHHhCCC------CCccEEEEeccCchhHHHHHHhhCCCCCeEEEec--CCCcccccCCceeEEEecC
Q 007743 261 ILEANFEEEMRQIMKLLPK------KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVD--DGRTKVTNEGLQQGYCVVP 332 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~~~~~~ 332 (591)
|++++|.+.+..|+..++. ...|+++||||+++.+..++...+.. +..+.+. ..........+.+.+....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCC-CceEEEeccCCCCccccccCceEEEECc
Confidence 9999999999998877632 26799999999999999888876654 4444332 2222334455666666554
Q ss_pred ch-hHH----HHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHc---CCCeEeccCccCHHHHHHHHHHhhcCCccEE
Q 007743 333 SA-KRF----ILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403 (591)
Q Consensus 333 ~~-~k~----~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vL 403 (591)
.. .+. ..+...+.. ....++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++|+..||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 32 222 223333333 45779999999999999999999987 8999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccccChHHH
Q 007743 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFDQKKL 482 (591)
Q Consensus 404 vaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~~~~~~ 482 (591)
|||+++++|||+|+|++||+||+|.++..|+||+|||||.| ..|.|++|+.+.|..+++.+.+ .++++.........
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~- 474 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPS- 474 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEECCC-
T ss_pred EEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCC-CCceEEEEEchhHHHHHHHHHHHhCCCcccccccCcc-
Confidence 99999999999999999999999999999999999999975 6899999999999999999864 45666544321111
Q ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHhcCcCccccccCCcC-HHHHHHHcCC-CCCC
Q 007743 483 ANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLD-LQAVAASFCF-SSPP 543 (591)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~-~~~l~~~~g~-~~~p 543 (591)
..+...+...+..... ....+.++|+..|..+. ..|.....+ +.++|.+||+ ...|
T Consensus 475 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (563)
T 3i5x_A 475 EEIKSEVLEAVTEEPE---DISDIVISLISSYRSCI--KEYRFSERRILPEIASTYGVLLNDP 532 (563)
T ss_dssp HHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHTH--HHHTCCHHHHHHHHHTHHHHHTTCT
T ss_pred HHHHHHHHHHHhhCHH---HHHHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHhCCC
Confidence 1122233333333322 23355556666555542 223334433 5688888874 3444
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.1e-56 Score=468.81 Aligned_cols=365 Identities=28% Similarity=0.491 Sum_probs=325.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||||||++|++|++..+... ..+.++||+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~lil 95 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----LNKIQALIM 95 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----SCSCCEEEE
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc----cCCccEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999876432 245689999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||++|+.|+++.+..+....+..+..+.|+.........+..+++|+|+||++|.+++.... ..+.++++||+||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDEADK 174 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeCchH
Confidence 999999999999999998888889999999988877777777889999999999999887654 5678999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
+.+.+|...+..++..++. ..|++++|||++..+..+....+.. |..+.+.. ......+.+.+..+....+...+
T Consensus 175 ~~~~~~~~~~~~i~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 175 MLSRDFKTIIEQILSFLPP-THQSLLFSATFPLTVKEFMVKHLHK-PYEINLME---ELTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp HSSHHHHHHHHHHHTTSCS-SCEEEEEESCCCHHHHHHHHHHCSS-CEEESCCS---SCBCTTEEEEEEECCGGGHHHHH
T ss_pred hhhhchHHHHHHHHHhCCc-CceEEEEEecCCHHHHHHHHHHcCC-CeEEEecc---ccccCCceeEEEEechhhHHHHH
Confidence 9999999999999988886 7899999999999998887776654 55544332 23455677888888888899899
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 250 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 250 NTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccc
Q 007743 421 IVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYE 476 (591)
Q Consensus 421 VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~ 476 (591)
||+|++|.++..|+||+||+||.| ..|.|++|+++.|...++.+.+ .+.+++.++
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 385 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFG-HLGLAINLINWNDRFNLYKIEQELGTEIAAIP 385 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTT-CCEEEEEEECGGGHHHHHHHHHHHTCCCEECC
T ss_pred EEEeCCCCCHHHHHHhcchhcCCC-CCceEEEEeccchHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999975 6899999999999988888754 566666554
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-56 Score=472.40 Aligned_cols=367 Identities=29% Similarity=0.486 Sum_probs=310.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|+++++++.+++.|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+... ..+.++||+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~lil 114 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD----LKATQALVL 114 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT----SCSCCEEEE
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc----CCceeEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999876432 246679999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
+||++|+.|+++.+..++...+..+..++|+.........+. .+++|+|+||++|++++.... +.+.++++||+||||
T Consensus 115 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~~vViDEah 193 (414)
T 3eiq_A 115 APTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVLDEAD 193 (414)
T ss_dssp CSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS-SCSTTCCEEEECSHH
T ss_pred eChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccCcEEEEECHH
Confidence 999999999999999999988999999999988877766665 678999999999999998755 667889999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc-hhHHH
Q 007743 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS-AKRFI 338 (591)
Q Consensus 260 ~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~~ 338 (591)
++.+.+|...+..++..++. ..|++++|||++..+..+....+.. +..+.+.. .......+.+.+..+.. ..+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIFQKLNS-NTQVVLLSATMPSDVLEVTKKFMRD-PIRILVKK--EELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp HHHHTTTHHHHHHHHTTSCT-TCEEEEECSCCCHHHHHHHTTTCSS-CEEECCCC--CCCCTTSCCEEEEECSSSTTHHH
T ss_pred HhhccCcHHHHHHHHHhCCC-CCeEEEEEEecCHHHHHHHHHHcCC-CEEEEecC--CccCCCCceEEEEEeChHHhHHH
Confidence 99999999999999999987 8999999999999998888876654 65555433 23344556666666654 44888
Q ss_pred HHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCC
Q 007743 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAV 418 (591)
Q Consensus 339 ~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v 418 (591)
.+..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 349 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 349 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGC
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCC
Confidence 89999988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCcccccc
Q 007743 419 DWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEF 477 (591)
Q Consensus 419 ~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~ 477 (591)
++||+|++|.++..|+||+||+||.| ..|.|++|+++.+...++.+.. .+..+.....
T Consensus 350 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (414)
T 3eiq_A 350 SLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 408 (414)
T ss_dssp SCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCCCEECCC
T ss_pred CEEEEeCCCCCHHHhhhhcCcccCCC-CCceEEEEEcHHHHHHHHHHHHHHcCCccccCh
Confidence 99999999999999999999999965 6899999999999988888864 3555555443
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-55 Score=462.32 Aligned_cols=367 Identities=30% Similarity=0.510 Sum_probs=320.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||+|||++|++|++..+... ..+.++||+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil 82 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSVLVM 82 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC----TTCCCEEEE
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc----CCCeeEEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999876432 235689999
Q ss_pred cCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcC-CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 181 CPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
+||++|+.|+++.+.++.... +..+..+.|+.........+..+ ++|+|+||++|..++.... +.+.++++||+|||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vViDEa 161 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILDEC 161 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCSEEEECSH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-ccccccCEEEEeCH
Confidence 999999999999999998776 68899999988877666655544 7999999999999887755 66889999999999
Q ss_pred hhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH
Q 007743 259 DRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337 (591)
Q Consensus 259 h~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 337 (591)
|++.+ .+|...+..++...+. ..|++++|||+++.+..+....+.. |..+.+... .......+.+.+..+....+.
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 238 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPH-EKQVMMFSATLSKEIRPVCRKFMQD-PMEIFVDDE-TKLTLHGLQQYYVKLKDNEKN 238 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCS-SSEEEEEESSCCSTHHHHHHHHCSS-CEEEECCCC-CCCCCTTCEEEEEECCGGGHH
T ss_pred HHHhhccchHHHHHHHHhhCCC-CceEEEEEeeCCHHHHHHHHHHcCC-CeEEEecCc-cccCcccceEEEEEcCchhHH
Confidence 99988 5888899999988886 8999999999999998888877754 666655432 233445677888888888899
Q ss_pred HHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 338 ~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
..+..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|+
T Consensus 239 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 239 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChh-hHHHHHHHHH-cCCCccccc
Q 007743 418 VDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE-ELQFLRYLKA-AKVPVKEYE 476 (591)
Q Consensus 418 v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~-e~~~~~~l~~-~~~~~~~~~ 476 (591)
+++||+|++|.++..|+||+||+||.| ..|.+++|+++. +..+++.+.+ .++++.+.+
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELP 378 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSC-CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECC
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCC-CceEEEEEEcccchHHHHHHHHHHhcCChhhCC
Confidence 999999999999999999999999975 789999999976 4566777754 466665544
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2e-58 Score=496.92 Aligned_cols=358 Identities=25% Similarity=0.411 Sum_probs=176.6
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCc
Q 007743 98 IMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGT 175 (591)
Q Consensus 98 ~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~ 175 (591)
..+..+|.+++|++.++++|.++||..|+|+|.++||.++.+ ++++++||||||||++|++|+++.+... ..++
T Consensus 88 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~----~~~~ 163 (479)
T 3fmp_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----NKYP 163 (479)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT----SCSC
T ss_pred ccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc----CCCC
Confidence 345678999999999999999999999999999999999987 9999999999999999999999876432 2455
Q ss_pred EEEEEcCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEE
Q 007743 176 GVIVICPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLV 254 (591)
Q Consensus 176 ~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lV 254 (591)
++|||+||++||.|+++.+..+.... +..+....++....... ..+++|+|+||++|++++.+...+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999999999998764 46677777766543321 235799999999999999876656789999999
Q ss_pred EeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc
Q 007743 255 IDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS 333 (591)
Q Consensus 255 lDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 333 (591)
|||||++++ .+|...+..+...++. .+|+++||||++..+..++...+.. +..+.+... ......+.+.+..++.
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~--~~~~~~~~~~~~~~~~ 316 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPR-NCQMLLFSATFEDSVWKFAQKVVPD-PNVIKLKRE--EETLDTIKQYYVLCSS 316 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCT-TSEEEEEESCCCHHHHHHHHHHSSS-EEEEEEC--------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCc-cceEEEEeCCCCHHHHHHHHHHcCC-CeEEecccc--ccCcCCceEEEEEeCC
Confidence 999999997 7888888899988887 8999999999999999988877654 666666542 3344556666666654
Q ss_pred -hhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccC
Q 007743 334 -AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARG 412 (591)
Q Consensus 334 -~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 412 (591)
..+...+..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 317 ~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~G 396 (479)
T 3fmp_B 317 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccC
Confidence 5677778888877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCC------ChhhhhhhccccccCCCCcceEEEEeChhh-HHHHHHHHH
Q 007743 413 LDIPAVDWIVQYDPPD------EPKEYIHRVGRTARGEGARGNALLFLIPEE-LQFLRYLKA 467 (591)
Q Consensus 413 iDip~v~~VI~~~~P~------s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e-~~~~~~l~~ 467 (591)
||+|++++||+||+|. +...|+||+|||||.| ..|.+++|+.+.+ ..+++.+.+
T Consensus 397 lDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g-~~G~~i~~~~~~~~~~~~~~i~~ 457 (479)
T 3fmp_B 397 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQE 457 (479)
T ss_dssp --------------------------------------------------------------
T ss_pred CccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCC-CCceEEEEEcCcchHHHHHHHHH
Confidence 9999999999999994 6789999999999964 7899999998765 666666644
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.4e-55 Score=458.06 Aligned_cols=378 Identities=27% Similarity=0.450 Sum_probs=317.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVI 178 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~l 178 (591)
..+|++++|++.++++|.++||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+... ..+.++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~l 79 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE----DASPQAI 79 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----CCSCCEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC----CCCccEE
Confidence 368999999999999999999999999999999999998 9999999999999999999999876432 2466899
Q ss_pred EEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 179 VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
|++||++|+.|+++.+.+++...+..+....++...... ..+++|+|+||++|.+++.... +.+.++++||+|||
T Consensus 80 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDEa 154 (395)
T 3pey_A 80 CLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLDEA 154 (395)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTC-BCCTTCCEEEEETH
T ss_pred EECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCC-cccccCCEEEEECh
Confidence 999999999999999999988888888888877654332 2368999999999999987754 66889999999999
Q ss_pred hhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC-chhH
Q 007743 259 DRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP-SAKR 336 (591)
Q Consensus 259 h~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~k 336 (591)
|++.+ .++...+..+...++. ..|++++|||+++.+..+....+.. +..+.... .......+.+.+..+. ...+
T Consensus 155 h~~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 230 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFLPK-DTQLVLFSATFADAVRQYAKKIVPN-ANTLELQT--NEVNVDAIKQLYMDCKNEADK 230 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTSCT-TCEEEEEESCCCHHHHHHHHHHSCS-CEEECCCG--GGCSCTTEEEEEEECSSHHHH
T ss_pred hhhcCccccHHHHHHHHHhCCC-CcEEEEEEecCCHHHHHHHHHhCCC-CeEEEccc--cccccccccEEEEEcCchHHH
Confidence 99988 7888899999988887 8999999999999998888877654 55554433 2334455666666664 4567
Q ss_pred HHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCC
Q 007743 337 FILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP 416 (591)
Q Consensus 337 ~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip 416 (591)
...+..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 231 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 231 FDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcc
Confidence 77888888877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCC------ChhhhhhhccccccCCCCcceEEEEeChh-hHHHHHHHHHcCCCccccccChHHHHHHHHHH
Q 007743 417 AVDWIVQYDPPD------EPKEYIHRVGRTARGEGARGNALLFLIPE-ELQFLRYLKAAKVPVKEYEFDQKKLANVQSHL 489 (591)
Q Consensus 417 ~v~~VI~~~~P~------s~~~y~qr~GR~gR~~~~~g~~i~~~~~~-e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 489 (591)
++++||+||+|. ++..|+||+||+||.| ..|.+++|+.+. +..+++.+.+.--.++...++...+..+++.+
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 389 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFG-RKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIV 389 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHHHHH
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccCC-CCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHHHHH
Confidence 999999999999 9999999999999965 689999999874 45666666553222333344444555555555
Q ss_pred HHH
Q 007743 490 EKL 492 (591)
Q Consensus 490 ~~~ 492 (591)
.++
T Consensus 390 ~~~ 392 (395)
T 3pey_A 390 KKV 392 (395)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.1e-55 Score=461.86 Aligned_cols=368 Identities=24% Similarity=0.400 Sum_probs=313.8
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCC
Q 007743 96 GGIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRN 173 (591)
Q Consensus 96 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 173 (591)
.+.....+|++++|++.++++|.++||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+... ..
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----~~ 94 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----NK 94 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----SC
T ss_pred CCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc----CC
Confidence 34455678999999999999999999999999999999999987 9999999999999999999999886542 34
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceE
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKC 252 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~ 252 (591)
+.++||++||++|+.|+++.+.++.... +..+....++....... ..+++|+|+||++|++++.....+.+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcE
Confidence 5689999999999999999999998764 56777777776544322 3457999999999999997766567889999
Q ss_pred EEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEec
Q 007743 253 LVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV 331 (591)
Q Consensus 253 lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 331 (591)
||+||||++++ .+|...+..+...++. ..|++++|||+++.+..+....+.. +..+.+.. .......+.+.+..+
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~ 247 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPR-NCQMLLFSATFEDSVWKFAQKVVPD-PNVIKLKR--EEETLDTIKQYYVLC 247 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCT-TCEEEEEESCCCHHHHHHHHHHSSS-CEEECCCG--GGSSCTTEEEEEEEC
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCC-CceEEEEEeecCHHHHHHHHHhcCC-CeEEeecc--ccccccCceEEEEEc
Confidence 99999999987 7888888889988887 8999999999999998888877654 66665543 334455666766666
Q ss_pred Cc-hhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccc
Q 007743 332 PS-AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA 410 (591)
Q Consensus 332 ~~-~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 410 (591)
.. ..+...+..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 248 SSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp SSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred CChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 54 56888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCC------ChhhhhhhccccccCCCCcceEEEEeChhh-HHHHHHHHH-cCCCcccc
Q 007743 411 RGLDIPAVDWIVQYDPPD------EPKEYIHRVGRTARGEGARGNALLFLIPEE-LQFLRYLKA-AKVPVKEY 475 (591)
Q Consensus 411 ~GiDip~v~~VI~~~~P~------s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e-~~~~~~l~~-~~~~~~~~ 475 (591)
+|+|+|++++||+||+|. +...|+||+||+||.| ..|.+++|+.+.+ ..+++.+.+ .+..+...
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCC-CCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 999999999999999994 6789999999999965 6899999998764 677777754 34444443
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-54 Score=446.94 Aligned_cols=359 Identities=33% Similarity=0.546 Sum_probs=315.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC-CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG-KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
..+|++++|++.+.++|.++||..|+|+|.++++.++++ +++++.+|||||||++|++|++..+.. ..+.++||
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-----~~~~~~li 79 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-----NNGIEAII 79 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-----SSSCCEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-----cCCCcEEE
Confidence 357999999999999999999999999999999999988 799999999999999999999887543 24678999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
++|+++|+.|+++.+..+....+..+..+.|+.........+. +++|+|+||++|.+++.... +.+.++++||+||||
T Consensus 80 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 80 LTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT-LNLKNVKYFILDEAD 157 (367)
T ss_dssp ECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC-SCTTSCCEEEEETHH
T ss_pred EcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC-cccccCCEEEEeCch
Confidence 9999999999999999998888888999999887766655544 68999999999999887754 567899999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHH
Q 007743 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFIL 339 (591)
Q Consensus 260 ~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 339 (591)
++.+.+|...+..++..++. ..+++++|||++..+..+....+.. +.++.... ...+.+.+..+....+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 229 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNK-DKRILLFSATMPREILNLAKKYMGD-YSFIKAKI------NANIEQSYVEVNENERFEA 229 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCS-SCEEEEECSSCCHHHHHHHHHHCCS-EEEEECCS------SSSSEEEEEECCGGGHHHH
T ss_pred HhhhhchHHHHHHHHHhCCC-CceEEEEeeccCHHHHHHHHHHcCC-CeEEEecC------CCCceEEEEEeChHHHHHH
Confidence 99999999999999998876 8899999999999988887766654 44444322 2356777888888888888
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
+..++. ....++||||++...++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 230 l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 230 LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 888887 4577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccc
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYE 476 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~ 476 (591)
+||+|++|.++..|+||+||+||.| ..|.+++++++.|...++.+.+ .+..++.++
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAG-KKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSS-SCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEEecCCCCHHHhhhcccccccCC-CccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999975 6899999999999988888854 455555443
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.9e-56 Score=464.14 Aligned_cols=356 Identities=31% Similarity=0.500 Sum_probs=180.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.++++|..+||..|+|+|.++++.++.|+++++++|||+|||++|++|+++.+... ..+.++||+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil 95 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKAPQALML 95 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----CCSCCEEEE
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----CCCCCEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999876432 246689999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||++|+.|+++.+.++....+..+..++|+.........+. +++|+|+||++|++.+.... +.+.++++||+||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADE 173 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC-cchhhCcEEEEEChHH
Confidence 999999999999999998888899999999887766554443 68999999999999987754 6678999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh-HHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK-RFIL 339 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-k~~~ 339 (591)
+.+.+|...+..++..++. ..|++++|||+++.+..+....+.. |..+.+... ......+.+.+..+.... +...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 174 MLSSGFKEQIYQIFTLLPP-TTQVVLLSATMPNDVLEVTTKFMRN-PVRILVKKD--ELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHTTCHHHHHHHHHHSCT-TCEEEEECSSCCHHHHHHHHHHCCS-CEEEEECC--------------------------
T ss_pred hhCCCcHHHHHHHHHhCCC-CceEEEEEEecCHHHHHHHHHhcCC-CeEEEecCc--cccCCCceEEEEEcCchhhHHHH
Confidence 9999999999999999987 8899999999999988888776654 666555432 223344555555444433 6667
Q ss_pred HHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 340 LYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 340 l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
+..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 250 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC
Confidence 77777776778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
+||+|++|.++..|+||+||+||.| ..|.|++|+++.+...++.+.+
T Consensus 330 ~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 330 LVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ------------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHcCcccCCC-CCceEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999975 6899999999999888777754
No 14
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.6e-54 Score=463.53 Aligned_cols=382 Identities=20% Similarity=0.273 Sum_probs=299.0
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 102 TSFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
.+|++++|++.+.+.|.+ +||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. ...+|||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~g~~lvi 71 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------NGLTVVV 71 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----------SSEEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----------CCCEEEE
Confidence 369999999999999998 99999999999999999999999999999999999999999743 3568999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHH---HHH-hcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEe
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA---ERI-VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
+|+++|+.|+++.+..+ +..+..+.++....... ..+ ...++|+|+||++|........ +...++.+||||
T Consensus 72 ~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~-l~~~~~~~vViD 146 (523)
T 1oyw_A 72 SPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH-LAHWNPVLLAVD 146 (523)
T ss_dssp CSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHH-HTTSCEEEEEES
T ss_pred CChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHH-HhhCCCCEEEEe
Confidence 99999999999888764 66777777766544322 222 3458999999999953211111 234689999999
Q ss_pred Cchhhhccc--cHHHHHHH---HHhCCCCCccEEEEeccCchhHHH-HHHhhCCCCCeEEEecCCCcccccCCceeEEEe
Q 007743 257 EADRILEAN--FEEEMRQI---MKLLPKKDRQTALFSATQTKKVED-LARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCV 330 (591)
Q Consensus 257 Eah~l~~~~--f~~~~~~i---~~~l~~~~~q~ll~SAT~~~~~~~-l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 330 (591)
|||+++++| |++.+..+ ...++ ..+++++|||+++.+.. +........+..+..... ..++. +..
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-----r~~l~--~~v 217 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFP--TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD-----RPNIR--YML 217 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCT--TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC-----CTTEE--EEE
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCC--CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC-----CCceE--EEE
Confidence 999999876 76665544 45555 58899999999998754 444332233444332221 12222 344
Q ss_pred cCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccc
Q 007743 331 VPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA 410 (591)
Q Consensus 331 ~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 410 (591)
.....+...+..++......++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|.+|+.+|||||++++
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 218 MEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp EECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred EeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 44456777788888887788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccChHHHHHHHHHHH
Q 007743 411 RGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLE 490 (591)
Q Consensus 411 ~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (591)
+|||+|+|++||||++|.+++.|+||+|||||.| ..|.|++|+++.|...++.+..... +..........+.
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g-~~~~~~l~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~l~ 369 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCLEEKP-------QGQLQDIERHKLN 369 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHHHTSC-------CSHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCC-CCceEEEEeCHHHHHHHHHHHhccC-------cHHHHHHHHHHHH
Confidence 9999999999999999999999999999999964 6899999999999998888866421 1111122223334
Q ss_pred HHHHcchhHHHHHHHHHHHHHHHHhcCcCc
Q 007743 491 KLVANNYYLNKSAKDAYRSYILAYNSHSMK 520 (591)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 520 (591)
.++... ....|++.++..|+.+...
T Consensus 370 ~m~~~~-----~~~~crr~~l~~~f~e~~~ 394 (523)
T 1oyw_A 370 AMGAFA-----EAQTCRRLVLLNYFGEGRQ 394 (523)
T ss_dssp HHHHHH-----TCSSCHHHHHHHHTTCCCC
T ss_pred HHHHHH-----hccccHhhhhHhhcCCCCC
Confidence 333211 1247999999999987654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-52 Score=456.03 Aligned_cols=376 Identities=15% Similarity=0.218 Sum_probs=293.8
Q ss_pred ccccCCCCHHHHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 103 SFDSLGLSQHTFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.+.++++++.+.+.|+. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. ...+|||+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------~g~~lVis 91 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------DGFTLVIC 91 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------SSEEEEEC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------CCcEEEEe
Confidence 45568999999999998 79999999999999999999999999999999999999999742 45799999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---H---hcCCCEEEeCchHHH------HHHhcCCCCccCC
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---I---VKGVNLLVATPGRLL------DHLQNTKGFIYKN 249 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~~Iiv~Tp~~L~------~~l~~~~~~~~~~ 249 (591)
|+++|+.|+++.+..+ ++.+..+.|+......... + ...++|+|+||++|. +.+.. ...+.+
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~ 165 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARR 165 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTC
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccC
Confidence 9999999999998876 6778888887765443222 2 356899999999874 33332 134678
Q ss_pred ceEEEEeCchhhhccc--cHHHHHH---HHHhCCCCCccEEEEeccCchhHHHHHHhhCCC-CCeEEEecCCCcccccCC
Q 007743 250 LKCLVIDEADRILEAN--FEEEMRQ---IMKLLPKKDRQTALFSATQTKKVEDLARLSFQT-TPVYIDVDDGRTKVTNEG 323 (591)
Q Consensus 250 l~~lVlDEah~l~~~~--f~~~~~~---i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~ 323 (591)
+++|||||||+++++| |++.+.. +...++ ..++++||||+++.+...+...+.. .+..+.... ...+
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~--~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~-----~r~n 238 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP--NASLIGLTATATNHVLTDAQKILCIEKCFTFTASF-----NRPN 238 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT--TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC-----CCTT
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCC--CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC-----CCcc
Confidence 9999999999999877 7776654 334444 6899999999999886655545443 233333222 1222
Q ss_pred ceeEEEecC--chhHHHHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCc
Q 007743 324 LQQGYCVVP--SAKRFILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400 (591)
Q Consensus 324 l~~~~~~~~--~~~k~~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~ 400 (591)
+...+.... ...+...+..++.. ....++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|.+|+.
T Consensus 239 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI 318 (591)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred cEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 333333222 23456677777764 357899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHHcCCCccccccChH
Q 007743 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQK 480 (591)
Q Consensus 401 ~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 480 (591)
.|||||+++++|||+|+|++||||++|.+++.|+||+|||||. |..|.|++|+.+.|...++.+.... ..
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~-G~~g~~i~l~~~~D~~~~~~~~~~~---------~~ 388 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRD-DMKADCILYYGFGDIFRISSMVVME---------NV 388 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTT-SSCEEEEEEECHHHHHHHHHHTTTS---------TT
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcC-CCCceEEEEEChHHHHHHHHHHhhh---------hh
Confidence 9999999999999999999999999999999999999999996 4689999999999998887775321 01
Q ss_pred HHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHhcCcC
Q 007743 481 KLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 519 (591)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 519 (591)
.. ..+..++.. ......|.+.++..|+.+..
T Consensus 389 ~~----~~l~~~~~~----~~~~~~Crr~~ll~~f~e~~ 419 (591)
T 2v1x_A 389 GQ----QKLYEMVSY----CQNISKCRRVLMAQHFDEVW 419 (591)
T ss_dssp HH----HHHHHHHHH----HTCSSSCHHHHHHHHHTCCC
T ss_pred hH----HHHHHHHHH----HhcccccHHHHHHHHcCCCC
Confidence 11 122222211 01124788999999997754
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-51 Score=423.66 Aligned_cols=331 Identities=32% Similarity=0.534 Sum_probs=286.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~ 188 (591)
|++.+.++|.++||..|+|+|.++++.+++|+++++.+|||+|||++|++|+++. +.++||++|+++|+.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------~~~~liv~P~~~L~~ 70 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------GMKSLVVTPTRELTR 70 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------cCCEEEEeCCHHHHH
Confidence 5789999999999999999999999999999999999999999999999998864 467999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHH
Q 007743 189 QTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEE 268 (591)
Q Consensus 189 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~ 268 (591)
|+++.+.++....+..+..++|+.........+. .++|+|+||++|.+++.... +.+.++++||+||||++.+.+|..
T Consensus 71 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 71 QVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV-IDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS-CCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC-cchhhCcEEEEEChHHhhccccHH
Confidence 9999999998888889999999887776655544 48999999999999887654 567889999999999999999999
Q ss_pred HHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcC
Q 007743 269 EMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNL 348 (591)
Q Consensus 269 ~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~ 348 (591)
.+..++..++. ..+++++|||+++.+.......+.. +..+... .....+.+.+..+....+. ....+....
T Consensus 149 ~~~~~~~~~~~-~~~~~~~SAT~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 219 (337)
T 2z0m_A 149 DIKIILAQTSN-RKITGLFSATIPEEIRKVVKDFITN-YEEIEAC-----IGLANVEHKFVHVKDDWRS--KVQALRENK 219 (337)
T ss_dssp HHHHHHHHCTT-CSEEEEEESCCCHHHHHHHHHHSCS-CEEEECS-----GGGGGEEEEEEECSSSSHH--HHHHHHTCC
T ss_pred HHHHHHhhCCc-ccEEEEEeCcCCHHHHHHHHHhcCC-ceeeecc-----cccCCceEEEEEeChHHHH--HHHHHHhCC
Confidence 99999999887 7899999999999988887776654 4444321 2334455556655544332 235666677
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD 428 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~ 428 (591)
.+++||||++.+.++.++..|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 8899999999999999988886 688999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHH
Q 007743 429 EPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLK 466 (591)
Q Consensus 429 s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~ 466 (591)
++..|+||+||+||.| ..|.+++|+. .|...++.+.
T Consensus 296 s~~~~~Q~~GR~gR~g-~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMG-RKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp SHHHHHHHHTTBCGGG-CCEEEEEEES-SCHHHHHHHC
T ss_pred CHHHhhHhcCccccCC-CCceEEEEEe-CcHHHHHHHH
Confidence 9999999999999975 6899999999 7777777664
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.6e-50 Score=425.63 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=259.4
Q ss_pred HHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHH
Q 007743 113 TFRAIQD-MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTH 191 (591)
Q Consensus 113 l~~~l~~-~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~ 191 (591)
+.+.+++ +|| .|+|+|.++++.++.|+|++++||||||||++|++|++..+ ..+.++|||+||++||.|++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECCHHHHHHHH
Confidence 4445554 566 79999999999999999999999999999999999988765 24678999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEcCccc---hHHHHHHhcC-CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc----
Q 007743 192 AVAKDLLKYHSQTVGLVIGGSAR---RGEAERIVKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---- 263 (591)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~---- 263 (591)
+.+..++. .++.+..++|+... ......+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.+
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch
Confidence 99999877 78899999999887 5555666666 99999999999988864 4567899999999986653
Q ss_pred -------cccHHH-HHHHHHhCC-----------CCCccEEEEecc-CchhHH-HHHHhhCCCCCeEEEecCCCcccccC
Q 007743 264 -------ANFEEE-MRQIMKLLP-----------KKDRQTALFSAT-QTKKVE-DLARLSFQTTPVYIDVDDGRTKVTNE 322 (591)
Q Consensus 264 -------~~f~~~-~~~i~~~l~-----------~~~~q~ll~SAT-~~~~~~-~l~~~~~~~~~~~i~~~~~~~~~~~~ 322 (591)
++|.+. +..++..++ . ..|++++||| .+..+. .+....+. +..........
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 229 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK-PGILVVSSATAKPRGIRPLLFRDLLN-------FTVGRLVSVAR 229 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCC-CCEEEESSCCSSCCSSTTHHHHHHHS-------CCSSCCCCCCC
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCC-CceEEEEecCCCcchhHHHHHHHhhc-------cCcCccccccc
Confidence 677777 788887765 4 7899999999 555543 33332222 11112233445
Q ss_pred CceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeE-eccCccCHHHHHHHHHHhhcCCcc
Q 007743 323 GLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF-DIHGKQKQQKRTTTFFDFCKAEKG 401 (591)
Q Consensus 323 ~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~lh~~~~~~~R~~~~~~F~~g~~~ 401 (591)
.+.+.+..++ +...+..++.. .+.++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+.+
T Consensus 230 ~i~~~~~~~~---~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 230 NITHVRISSR---SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp SEEEEEESSC---CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred cchheeeccC---HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 6677776664 44455666666 358999999999999999999999999998 99995 444 9999999999
Q ss_pred EEEE----eCccccCCCCCC-CcEEEEcCCC--CChhhhhhhccccccCCC---CcceEEEEeChhhHHHHHHH
Q 007743 402 ILLC----TDVAARGLDIPA-VDWIVQYDPP--DEPKEYIHRVGRTARGEG---ARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 402 vLva----T~~~~~GiDip~-v~~VI~~~~P--~s~~~y~qr~GR~gR~~~---~~g~~i~~~~~~e~~~~~~l 465 (591)
|||| |+++++|||+|+ |++||+||+| .++.+|+||+|||||.|. ..|.+++|+ .+...++.+
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l 371 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESL 371 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHH
Confidence 9999 999999999999 9999999999 999999999999999753 479999999 444444444
No 18
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-50 Score=463.46 Aligned_cols=341 Identities=19% Similarity=0.167 Sum_probs=269.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
..|..+++++.+...+...++..|+|+|.++|+.++.|++++++||||||||++|++|++..+. .+.++||++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------~g~rvlvl~ 234 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTS 234 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-------TTCEEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEc
Confidence 4677888888888887777888899999999999999999999999999999999999998874 367899999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
||++||.|+++.+..+.. .+++++|+.... .+++|+|+||++|++++.... ..+.++++|||||||+|
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGGGT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhhhc
Confidence 999999999999988754 688888887644 348999999999999998765 55788999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCccEEEEeccCchhHH--HHHHhhCCCCCeEEEecCCCcccccCCceeEEEecC-------
Q 007743 262 LEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVE--DLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP------- 332 (591)
Q Consensus 262 ~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~------- 332 (591)
.+.+|...+..++..++. ..|+++||||+++... .+....... +..+....... ..+.+++....
T Consensus 303 ~d~~rg~~~e~ii~~l~~-~~qvl~lSATipn~~e~a~~l~~~~~~-~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~ 376 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPD-KVRYVFLSATIPNAMEFAEWICKIHSQ-PCHIVYTNFRP----TPLQHYLFPAHGDGIYLV 376 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCT-TSEEEEEECSCSSCHHHHHHHHHHTCS-CEEEEEECCCS----SCEEEEEEETTSSCCEEE
T ss_pred cccchHHHHHHHHHhcCC-CceEEEEcCCCCCHHHHHHHHHhhcCC-CeEEEecCCCc----ccceEEEeecCCcceeee
Confidence 999999999999999987 8999999999987632 444433333 33333322111 11122111100
Q ss_pred ------------------------------------------------chhHHHHHHHHHHhcCCCcEEEEecChhhHHH
Q 007743 333 ------------------------------------------------SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKF 364 (591)
Q Consensus 333 ------------------------------------------------~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~ 364 (591)
....+..++..+......++||||+++..|+.
T Consensus 377 vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~ 456 (1108)
T 3l9o_A 377 VDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE 456 (1108)
T ss_dssp EETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred eccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHH
Confidence 02233345555555667799999999999999
Q ss_pred HHHHHHHcCC---------------------------------------CeEeccCccCHHHHHHHHHHhhcCCccEEEE
Q 007743 365 HSELLRYIQV---------------------------------------DCFDIHGKQKQQKRTTTFFDFCKAEKGILLC 405 (591)
Q Consensus 365 l~~~L~~~~~---------------------------------------~~~~lh~~~~~~~R~~~~~~F~~g~~~vLva 405 (591)
++..|...++ ++..+||+|++.+|..++..|.+|.++||||
T Consensus 457 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 457 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 9988865322 2789999999999999999999999999999
Q ss_pred eCccccCCCCCCCcEEEEcCCC--------CChhhhhhhccccccCC-CCcceEEEEeChh-hHHHHHHHHH
Q 007743 406 TDVAARGLDIPAVDWIVQYDPP--------DEPKEYIHRVGRTARGE-GARGNALLFLIPE-ELQFLRYLKA 467 (591)
Q Consensus 406 T~~~~~GiDip~v~~VI~~~~P--------~s~~~y~qr~GR~gR~~-~~~g~~i~~~~~~-e~~~~~~l~~ 467 (591)
|+++++|||+|++++||+++.| .++..|+||+|||||.| ...|.|++++.+. +...++.+..
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 9999999999999999987764 36677999999999975 2579999999875 4455665544
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-51 Score=439.31 Aligned_cols=359 Identities=23% Similarity=0.383 Sum_probs=256.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
..|...++++.+.+.|.+.||..|+++|.++|+.+++| +++++++|||||||++|++|++..+... ..+.++||
T Consensus 119 ~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~----~~~~~vLv 194 (508)
T 3fho_A 119 XXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS----VPKPQAIC 194 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT----CCSCCEEE
T ss_pred ccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC----CCCceEEE
Confidence 34666789999999999999999999999999999998 9999999999999999999999887542 24568999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
|+|+++|+.|+++.+.++....+..+....++..... ...+++|+|+||++|++++.... +.+.++++||+||||
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~-~~~~~~~lIIiDEaH 269 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQ-LDARDIKVFVLDEAD 269 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEECCHH
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCC-ccccCCCEEEEechh
Confidence 9999999999999999998777766666655543322 23368999999999999887755 668899999999999
Q ss_pred hhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEec-CchhHH
Q 007743 260 RILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV-PSAKRF 337 (591)
Q Consensus 260 ~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~~~k~ 337 (591)
++.+ .+|...+..++..++. ..|++++|||+++.+..+....+.. +..+.+... ......+.+.+..+ ....+.
T Consensus 270 ~~~~~~~~~~~~~~i~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~-~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~ 345 (508)
T 3fho_A 270 NMLDQQGLGDQSMRIKHLLPR-NTQIVLFSATFSERVEKYAERFAPN-ANEIRLKTE--ELSVEGIKQLYMDCQSEEHKY 345 (508)
T ss_dssp HHTTC--CHHHHHHHHHHSCT-TCEEEEEESCCSTHHHHHHHHHSTT-CEEECCCCC--C----CCCCEEEEC--CHHHH
T ss_pred hhcccCCcHHHHHHHHHhCCc-CCeEEEEeCCCCHHHHHHHHHhcCC-CeEEEeccc--cCCcccceEEEEECCchHHHH
Confidence 9988 7899999999999987 8999999999999998888877654 555554432 23334455555555 445677
Q ss_pred HHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCC
Q 007743 338 ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPA 417 (591)
Q Consensus 338 ~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~ 417 (591)
..+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 346 ~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~ 425 (508)
T 3fho_A 346 NVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 425 (508)
T ss_dssp HHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTT
T ss_pred HHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccC
Confidence 78888887777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCC------CChhhhhhhccccccCCCCcceEEEEeCh-hhHHHHHHHHH-cCCCccc
Q 007743 418 VDWIVQYDPP------DEPKEYIHRVGRTARGEGARGNALLFLIP-EELQFLRYLKA-AKVPVKE 474 (591)
Q Consensus 418 v~~VI~~~~P------~s~~~y~qr~GR~gR~~~~~g~~i~~~~~-~e~~~~~~l~~-~~~~~~~ 474 (591)
+++||+|++| .++..|+||+||+||.| ..|.+++|+.+ .+...++.+.+ .+.++..
T Consensus 426 v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g-~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 426 VNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG-RVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp CCEEEC----CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred CCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC-CCcEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 9999999999 88999999999999965 68999999985 44555555543 3444443
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-49 Score=430.86 Aligned_cols=326 Identities=21% Similarity=0.270 Sum_probs=259.1
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.+|| .|||+|..++|.++.|+ |+.|+||+|||++|.+|++...+ .+..|+||+||++||.|+++++..+.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-------~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-------TGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 5899 99999999999999999 99999999999999999984432 35679999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcC-----CCCccCCceEEEEeCchhhh-ccc------
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNT-----KGFIYKNLKCLVIDEADRIL-EAN------ 265 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~-----~~~~~~~l~~lVlDEah~l~-~~~------ 265 (591)
.++++++++++||.+... +....+++|+|+||++| +++|... ..+.++.+.++||||||+|+ +.+
T Consensus 149 ~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp HHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred hhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 999999999999986543 33445799999999999 6666543 13567899999999999998 653
Q ss_pred ---------cHHHHHHHHHhCCC--------CCccEE-----------------EEeccCchhHHHH-----HHhhCCCC
Q 007743 266 ---------FEEEMRQIMKLLPK--------KDRQTA-----------------LFSATQTKKVEDL-----ARLSFQTT 306 (591)
Q Consensus 266 ---------f~~~~~~i~~~l~~--------~~~q~l-----------------l~SAT~~~~~~~l-----~~~~~~~~ 306 (591)
|...+..|+..++. ..+|++ +||||++..+..+ +...+..+
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 77899999999973 368888 9999987544333 22223222
Q ss_pred CeEEE-------ecC--C-------------------------CcccccCCce---------------------------
Q 007743 307 PVYID-------VDD--G-------------------------RTKVTNEGLQ--------------------------- 325 (591)
Q Consensus 307 ~~~i~-------~~~--~-------------------------~~~~~~~~l~--------------------------- 325 (591)
..++. ++. + ....+...+.
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 22221 100 0 0000000000
Q ss_pred --------------------eEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCcc
Q 007743 326 --------------------QGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQ 383 (591)
Q Consensus 326 --------------------~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 383 (591)
..++.+....|+..+...+.. ..+.++||||+|+..++.++..|...|+++..+||++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 113445667788888887764 3467899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeCccccCCCCC--------CCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeC
Q 007743 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP--------AVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455 (591)
Q Consensus 384 ~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip--------~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~ 455 (591)
.+.+|..+.+.|+.| .|+||||+++||+||+ ++.+||+|++|.+...|+||+|||||+| .+|.+++|++
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG-~~G~s~~~vs 543 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG-DPGITQFYLS 543 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEE
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC-CCCeEEEEec
Confidence 988887666666655 6999999999999999 7889999999999999999999999975 7899999999
Q ss_pred hhhH
Q 007743 456 PEEL 459 (591)
Q Consensus 456 ~~e~ 459 (591)
.+|.
T Consensus 544 ~eD~ 547 (844)
T 1tf5_A 544 MEDE 547 (844)
T ss_dssp TTSS
T ss_pred HHHH
Confidence 8763
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=7e-47 Score=437.44 Aligned_cols=280 Identities=19% Similarity=0.220 Sum_probs=232.2
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.+|| .|||+|.++||.++.|+|++++||||||||++|++|++..+ ..+.++|||+||++||.|+++.+..++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 4788 69999999999999999999999999999999988888766 246789999999999999999999976
Q ss_pred hhcCCeEEEEEcCccc---hHHHHHHhcC-CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh----------hhc-
Q 007743 199 KYHSQTVGLVIGGSAR---RGEAERIVKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR----------ILE- 263 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~----------l~~- 263 (591)
..++.++.++||.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||+ |++
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 678899999999987 5666677766 99999999999988874 4578899999999965 445
Q ss_pred cccHHH-HHHHHHhCC-----------CCCccEEEEecc-CchhHH-HHHHhhCCCCCeEEEecCCCcccccCCceeEEE
Q 007743 264 ANFEEE-MRQIMKLLP-----------KKDRQTALFSAT-QTKKVE-DLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYC 329 (591)
Q Consensus 264 ~~f~~~-~~~i~~~l~-----------~~~~q~ll~SAT-~~~~~~-~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 329 (591)
+||... +..++..++ . ..|+++|||| .|..+. .+....+. +.+. ........+.+.+.
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~-~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~--~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLK-PGILVVSSATAKPRGIRPLLFRDLLN-----FTVG--RLVSVARNITHVRI 293 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCC-CCEEEEECBSSCCCSSTTHHHHHHTC-----CCCC--BCCCCCCCEEEEEE
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCC-CceEEEEcCCCCcHHHHHHHhhccee-----EEec--cCCCCcCCceeEEE
Confidence 888888 888888776 4 7899999999 555544 23332222 1221 22335566777777
Q ss_pred ecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeE-eccCccCHHHHHHHHHHhhcCCccEEEE---
Q 007743 330 VVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF-DIHGKQKQQKRTTTFFDFCKAEKGILLC--- 405 (591)
Q Consensus 330 ~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~lh~~~~~~~R~~~~~~F~~g~~~vLva--- 405 (591)
.+. +...|..++.. .++++||||+++..++.++..|...++.+. .+||. |.+ ++.|++|+.+||||
T Consensus 294 ~~~---k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 294 SSR---SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp SCC---CHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETT
T ss_pred ecC---HHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecC
Confidence 663 44555666666 358999999999999999999999999998 99993 555 99999999999999
Q ss_pred -eCccccCCCCCC-CcEEEEcCCCC
Q 007743 406 -TDVAARGLDIPA-VDWIVQYDPPD 428 (591)
Q Consensus 406 -T~~~~~GiDip~-v~~VI~~~~P~ 428 (591)
|++++||||+|+ |++|||||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.5e-46 Score=417.74 Aligned_cols=340 Identities=18% Similarity=0.195 Sum_probs=267.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
..+|++++|++.+.+.+..+||..|+|+|.++++. +..+++++++||||||||++|.+|+++.+.. .+.+++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~il~ 80 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK------NGGKAIY 80 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH------SCSEEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH------CCCeEEE
Confidence 46799999999999999999999999999999999 7899999999999999999999999988764 2578999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
++|+|+||.|+++.++.+ ...+..++.++|+....... ...++|+|+||++|..++.... ..++++++||+||||
T Consensus 81 i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRP-EWLNEVNYFVLDELH 155 (715)
T ss_dssp ECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCC-GGGGGEEEEEECSGG
T ss_pred EeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCCh-hHhhccCEEEEechh
Confidence 999999999999998544 34578899989887655431 2468999999999999888754 347899999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccc-------cCCceeEEEecC
Q 007743 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT-------NEGLQQGYCVVP 332 (591)
Q Consensus 260 ~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~-------~~~l~~~~~~~~ 332 (591)
++.+.++...+..++..++ ..|++++|||+++ ...+..... . + .+.......... .......+....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~--~~~ii~lSATl~n-~~~~~~~l~-~-~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK--RRNLLALSATISN-YKQIAKWLG-A-E-PVATNWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH--TSEEEEEESCCTT-HHHHHHHHT-C-E-EEECCCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred hcCCcccchHHHHHHHhcc--cCcEEEEcCCCCC-HHHHHHHhC-C-C-ccCCCCCCCCceEEEEecCCcccceeeecCc
Confidence 9988888888988888776 6899999999986 356665432 1 1 111111000000 000000011111
Q ss_pred --------chhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcC-------------------------------
Q 007743 333 --------SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ------------------------------- 373 (591)
Q Consensus 333 --------~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~------------------------------- 373 (591)
.......+...+. .++++||||++++.++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 307 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELL 307 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHH
Confidence 1334445555443 46899999999999999999987642
Q ss_pred -----CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cC-------CCCChhhhhhhc
Q 007743 374 -----VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YD-------PPDEPKEYIHRV 437 (591)
Q Consensus 374 -----~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~-------~P~s~~~y~qr~ 437 (591)
..+..+||+|++.+|..+++.|.+|..+|||||+++++|||+|++++||+ || .|.+..+|.||+
T Consensus 308 ~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 308 KSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387 (715)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH
T ss_pred HHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh
Confidence 35899999999999999999999999999999999999999999999999 99 899999999999
Q ss_pred cccccCC-CCcceEEEEeChhhH
Q 007743 438 GRTARGE-GARGNALLFLIPEEL 459 (591)
Q Consensus 438 GR~gR~~-~~~g~~i~~~~~~e~ 459 (591)
|||||.| +..|.|++++++.+.
T Consensus 388 GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 388 GRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp TTBCCTTTCSCEEEEEECSCGGG
T ss_pred hhcCCCCCCCCceEEEEeCCchH
Confidence 9999965 247999999988763
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.4e-46 Score=412.39 Aligned_cols=336 Identities=17% Similarity=0.158 Sum_probs=205.4
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
++...|||+|.++++.++.|+|+++++|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.+.+++.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999999999999999998876421 2267899999999999999999999998
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHH-HHHHHh-C
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEM-RQIMKL-L 277 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~-~~i~~~-l 277 (591)
..+..+..++|+.........+..+++|+|+||++|.+++.......+.++++|||||||++.+.++...+ ..++.. +
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 88999999999987777667777789999999999999998765226889999999999999886643333 222221 1
Q ss_pred C--CCCccEEEEeccCchh-----------HHHHHHhhCC-----------------CCCeEEEecCC--Cccccc----
Q 007743 278 P--KKDRQTALFSATQTKK-----------VEDLARLSFQ-----------------TTPVYIDVDDG--RTKVTN---- 321 (591)
Q Consensus 278 ~--~~~~q~ll~SAT~~~~-----------~~~l~~~~~~-----------------~~~~~i~~~~~--~~~~~~---- 321 (591)
. .+..|++++|||++.. +..+...... ..|....+... ......
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 1 1258999999998531 1122221110 00111110000 000000
Q ss_pred ---C-------------Ccee-------------EE--------------------------------------------
Q 007743 322 ---E-------------GLQQ-------------GY-------------------------------------------- 328 (591)
Q Consensus 322 ---~-------------~l~~-------------~~-------------------------------------------- 328 (591)
. .+.. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0000 00
Q ss_pred ---------------------------------------------EecCchhHHHHHHHHHHh----cCCCcEEEEecCh
Q 007743 329 ---------------------------------------------CVVPSAKRFILLYSFLKR----NLSKKVMVFFSSC 359 (591)
Q Consensus 329 ---------------------------------------------~~~~~~~k~~~l~~~l~~----~~~~~~iVF~~s~ 359 (591)
.......|+..|..++.. ....++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 000013355556666654 4578999999999
Q ss_pred hhHHHHHHHHHHc------------CCCeEeccCccCHHHHHHHHHHhhc-CCccEEEEeCccccCCCCCCCcEEEEcCC
Q 007743 360 NSVKFHSELLRYI------------QVDCFDIHGKQKQQKRTTTFFDFCK-AEKGILLCTDVAARGLDIPAVDWIVQYDP 426 (591)
Q Consensus 360 ~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~R~~~~~~F~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~ 426 (591)
..++.++..|... |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|+|++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999875 5566677889999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhhhhccccccCCCCcceEEEEeChhhHH
Q 007743 427 PDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460 (591)
Q Consensus 427 P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~ 460 (591)
|+|+..|+||+|| ||. ..|.+++|+++.+..
T Consensus 481 p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA--AGSKCILVTSKTEVV 511 (556)
T ss_dssp CSCHHHHHHC-----------CCEEEEESCHHHH
T ss_pred CCCHHHHHHhcCC-CCC--CCceEEEEEeCcchH
Confidence 9999999999999 996 579999999987653
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.5e-46 Score=417.15 Aligned_cols=334 Identities=21% Similarity=0.222 Sum_probs=271.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
+|++++|++.+.+.+..+||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.+++|++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------GGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------CSEEEEEC
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------CCEEEEEc
Confidence 599999999999999999999999999999998 88999999999999999999999999888742 57899999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
|+++||.|+++.+.++.. .+..++.++|+...... ....++|+|+||++|..++.... ..++++++||+||||++
T Consensus 76 P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEIHLI 150 (720)
T ss_dssp SSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEETGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEECCccc
Confidence 999999999999865543 47889999997655432 23468999999999999887754 44789999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEE------EecC---
Q 007743 262 LEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGY------CVVP--- 332 (591)
Q Consensus 262 ~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~------~~~~--- 332 (591)
.+.++...+..++..++. ..|++++|||+++ ..++.... .. ..+..... +..+...+ ....
T Consensus 151 ~~~~r~~~~~~ll~~l~~-~~~ii~lSATl~n-~~~~~~~l-~~--~~~~~~~r-----p~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLG-KAQIIGLSATIGN-PEELAEWL-NA--ELIVSDWR-----PVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp GCTTTHHHHHHHHHHHBT-TBEEEEEECCCSC-HHHHHHHT-TE--EEEECCCC-----SSEEEEEEEETTEEEETTSCE
T ss_pred CCCcccHHHHHHHHHhhc-CCeEEEEcCCcCC-HHHHHHHh-CC--cccCCCCC-----CCcceEEEEeCCeeeccccch
Confidence 988899999999988876 8999999999986 35666543 21 11111110 00111111 1111
Q ss_pred --chhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc---------------------------------CCCeE
Q 007743 333 --SAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI---------------------------------QVDCF 377 (591)
Q Consensus 333 --~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~ 377 (591)
.......+...+. .++++||||++++.++.++..|... ..++.
T Consensus 221 ~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 221 DRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp EECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 1233444555554 3689999999999999999888753 13589
Q ss_pred eccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cC----CCCChhhhhhhccccccCC-CCcc
Q 007743 378 DIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YD----PPDEPKEYIHRVGRTARGE-GARG 448 (591)
Q Consensus 378 ~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~----~P~s~~~y~qr~GR~gR~~-~~~g 448 (591)
.+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| +..|
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999 77 6899999999999999975 3579
Q ss_pred eEEEEeChhhH
Q 007743 449 NALLFLIPEEL 459 (591)
Q Consensus 449 ~~i~~~~~~e~ 459 (591)
.|++++++.+.
T Consensus 379 ~~~~l~~~~~~ 389 (720)
T 2zj8_A 379 EGIIVSTSDDP 389 (720)
T ss_dssp EEEEECSSSCH
T ss_pred eEEEEecCccH
Confidence 99999998774
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.5e-46 Score=406.83 Aligned_cols=334 Identities=15% Similarity=0.166 Sum_probs=232.9
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|+|+|.++++.++.|+|+++++|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.+.+++...+.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 6999999999999999999999999999999999999998876421 22677999999999999999999999988899
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc-cHHHHHHHHHhC-C---
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEEMRQIMKLL-P--- 278 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~-f~~~~~~i~~~l-~--- 278 (591)
.+..++|+.........+..+++|+|+||++|.+++.......+.++++|||||||++.+.+ +...+..++... .
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999999987777777777899999999999999987663267889999999999998764 333333333332 1
Q ss_pred CCCccEEEEeccCchh-----------HHHHHHhhCCCCCeEEEecCCCc-----ccccCCceeEEEe------------
Q 007743 279 KKDRQTALFSATQTKK-----------VEDLARLSFQTTPVYIDVDDGRT-----KVTNEGLQQGYCV------------ 330 (591)
Q Consensus 279 ~~~~q~ll~SAT~~~~-----------~~~l~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~~~~------------ 330 (591)
....|++++|||++.. +..+... +. ...+....... .............
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LD--ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TT--CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cC--CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 1357999999998542 1122221 11 11111100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007743 331 -------------------------------------------------------------------------------- 330 (591)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (591)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred ------------------------------------------------cCchhHHHHHHHHHHh----cCCCcEEEEecC
Q 007743 331 ------------------------------------------------VPSAKRFILLYSFLKR----NLSKKVMVFFSS 358 (591)
Q Consensus 331 ------------------------------------------------~~~~~k~~~l~~~l~~----~~~~~~iVF~~s 358 (591)
.....|+..|..++.. ....++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0013355556666654 356899999999
Q ss_pred hhhHHHHHHHHHHcC------------CCeEeccCccCHHHHHHHHHHhhc-CCccEEEEeCccccCCCCCCCcEEEEcC
Q 007743 359 CNSVKFHSELLRYIQ------------VDCFDIHGKQKQQKRTTTFFDFCK-AEKGILLCTDVAARGLDIPAVDWIVQYD 425 (591)
Q Consensus 359 ~~~~~~l~~~L~~~~------------~~~~~lh~~~~~~~R~~~~~~F~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~ 425 (591)
+..++.++..|...+ .....+||+|++.+|..+++.|++ |..+|||||+++++|||+|+|++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999999863 345566779999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 426 PPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 426 ~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
+|+|+..|+||+|| ||. ..|.+++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA--RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT--TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC--CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 995 57999999999776544333
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.8e-46 Score=422.41 Aligned_cols=347 Identities=16% Similarity=0.161 Sum_probs=227.7
Q ss_pred HHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHH
Q 007743 114 FRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAV 193 (591)
Q Consensus 114 ~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~ 193 (591)
..+|..+||..|+++|.++++.++.|+|+|+++|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--TCCCCEEEECSSHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--CCCCeEEEEECCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999988865421 1236799999999999999999
Q ss_pred HHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccc-cHHHHHH
Q 007743 194 AKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-FEEEMRQ 272 (591)
Q Consensus 194 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~-f~~~~~~ 272 (591)
+.+++...++.+..++|+.........+..+++|+|+||++|++++.......+.++++|||||||++.+.. +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988888999999999877666666777899999999999999987652267889999999999987643 2222222
Q ss_pred HHHh----CCCCCccEEEEeccCc--------hhHHHHHHhh--CC------------------CCCeEEEe--cCCCcc
Q 007743 273 IMKL----LPKKDRQTALFSATQT--------KKVEDLARLS--FQ------------------TTPVYIDV--DDGRTK 318 (591)
Q Consensus 273 i~~~----l~~~~~q~ll~SAT~~--------~~~~~l~~~~--~~------------------~~~~~i~~--~~~~~~ 318 (591)
.+.. ......+++++|||+. ..+..+.... +. ..|..... ......
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 2223689999999987 1122222211 00 00111100 000000
Q ss_pred c-------------------------------------------------------------------------------
Q 007743 319 V------------------------------------------------------------------------------- 319 (591)
Q Consensus 319 ~------------------------------------------------------------------------------- 319 (591)
.
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred ----------------------------ccCCceeEEEe-------------c---CchhHHHHHHHHHHhc----CCCc
Q 007743 320 ----------------------------TNEGLQQGYCV-------------V---PSAKRFILLYSFLKRN----LSKK 351 (591)
Q Consensus 320 ----------------------------~~~~l~~~~~~-------------~---~~~~k~~~l~~~l~~~----~~~~ 351 (591)
....+.+.+.. . ....|+..|..++... ...+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000000 0 1334667777777664 5689
Q ss_pred EEEEecChhhHHHHHHHHHHcC----CCeEec--------cCccCHHHHHHHHHHhhc-CCccEEEEeCccccCCCCCCC
Q 007743 352 VMVFFSSCNSVKFHSELLRYIQ----VDCFDI--------HGKQKQQKRTTTFFDFCK-AEKGILLCTDVAARGLDIPAV 418 (591)
Q Consensus 352 ~iVF~~s~~~~~~l~~~L~~~~----~~~~~l--------h~~~~~~~R~~~~~~F~~-g~~~vLvaT~~~~~GiDip~v 418 (591)
+||||+++..++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999999
Q ss_pred cEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 419 DWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 419 ~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
++||+||+|.++.+|+||+|| ||. ..|.++++++..+......+
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~--~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SEEEEESCC--CCCC------------CCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC--CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999 996 47999999998776444333
No 27
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.5e-46 Score=405.61 Aligned_cols=324 Identities=20% Similarity=0.242 Sum_probs=233.4
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.+|. .|+++|..++|.++.|+ |+.++||||||++|++|++...+ .+.+++||+|||+||.|+++++..+.
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-------~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-------TGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-------TSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 3575 89999999999999998 99999999999999999986543 35679999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh-cc-------
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL-EA------- 264 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~~------- 264 (591)
.++++.+++++||.+.. .+.+..+++|+|+||++| +++|...- .+.++++.++||||||+|+ +.
T Consensus 140 ~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp HHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred HhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 99999999999998753 344555799999999999 78887542 2457899999999999998 44
Q ss_pred --------ccHHHHHHHHHhCCC-------------------CCccEE------------------------EEeccCch
Q 007743 265 --------NFEEEMRQIMKLLPK-------------------KDRQTA------------------------LFSATQTK 293 (591)
Q Consensus 265 --------~f~~~~~~i~~~l~~-------------------~~~q~l------------------------l~SAT~~~ 293 (591)
+|...+..|+..++. +.+|++ +||||.+.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 366788888888874 245654 89999765
Q ss_pred hHHHHH-----HhhCCCCC------------------------------------eEEEecCCCcccccCCce-------
Q 007743 294 KVEDLA-----RLSFQTTP------------------------------------VYIDVDDGRTKVTNEGLQ------- 325 (591)
Q Consensus 294 ~~~~l~-----~~~~~~~~------------------------------------~~i~~~~~~~~~~~~~l~------- 325 (591)
.+..+. ...+..+. ..+.+... ..+...+.
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e--~~tla~It~qnyfr~ 375 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNE--NQTLASITFQNYFRL 375 (853)
T ss_dssp -----------------------------------------------------------CCCC--CEEEEEEEHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccc--ccccceeehHHHHhh
Confidence 332221 11111100 11111111 11111111
Q ss_pred ----------------------------------------eEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHH
Q 007743 326 ----------------------------------------QGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVK 363 (591)
Q Consensus 326 ----------------------------------------~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~ 363 (591)
..++.+....|+..+...+.. ..+.++||||+|+..++
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 113455677899899888854 34678999999999999
Q ss_pred HHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCC-------------------------
Q 007743 364 FHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAV------------------------- 418 (591)
Q Consensus 364 ~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v------------------------- 418 (591)
.++..|...|+++..+||++.+.++..+.+.|+.| .|+||||+++||+||+..
T Consensus 456 ~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 456 LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 99999999999999999999988888888899888 699999999999999974
Q ss_pred ------------cEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 419 ------------DWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 419 ------------~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
.+||+|++|.|...|.||+|||||+| .+|.+++|++.+|.
T Consensus 534 ~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqG-d~G~s~~fls~eD~ 585 (853)
T 2fsf_A 534 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQG-DAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEETTSG
T ss_pred hhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCC-CCeeEEEEecccHH
Confidence 69999999999999999999999975 78999999998763
No 28
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3e-46 Score=419.74 Aligned_cols=335 Identities=22% Similarity=0.262 Sum_probs=266.2
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 103 SFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 103 ~f~~l~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
+|++++ |++.+.+.|.++||..|+|+|.++++.++.+++++++||||||||++|.+|+++.+.. +.+++|+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~l~i 74 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------GGKSLYV 74 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------CCcEEEE
Confidence 588898 9999999999999999999999999999999999999999999999999999988753 4679999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+|+++||.|+++.++.+ ...+..++.++|+...... ....++|+|+||++|..++.... ..++++++||+||||+
T Consensus 75 ~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDEIHL 149 (702)
T ss_dssp ESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETTGGG
T ss_pred eCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEeeeee
Confidence 99999999999998644 3347889999998765442 12468999999999999888754 4478999999999999
Q ss_pred hhccccHHHHHHHHHhCC--CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEE------ecC
Q 007743 261 ILEANFEEEMRQIMKLLP--KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYC------VVP 332 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~--~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------~~~ 332 (591)
+.+.++...+..++..+. .+..|++++|||+++ ..++.... .. + .+...... ..+...+. ...
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~-~-~~~~~~r~-----~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DA-D-YYVSDWRP-----VPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TC-E-EEECCCCS-----SCEEEEEECSSEEEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CC-C-cccCCCCC-----ccceEEEeeCCeeeccC
Confidence 998888888888776652 127899999999986 46666643 21 2 22221110 01111110 111
Q ss_pred ch-------hHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc------------------------------CCC
Q 007743 333 SA-------KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI------------------------------QVD 375 (591)
Q Consensus 333 ~~-------~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~------------------------------~~~ 375 (591)
.. .....+...+. .++++||||++++.++.++..|... +.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 10 14455555554 4689999999999999999888753 246
Q ss_pred eEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cC---CCCChhhhhhhccccccCC-CCc
Q 007743 376 CFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YD---PPDEPKEYIHRVGRTARGE-GAR 447 (591)
Q Consensus 376 ~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~---~P~s~~~y~qr~GR~gR~~-~~~ 447 (591)
+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| +..
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999 76 7999999999999999975 357
Q ss_pred ceEEEEeChhhHH
Q 007743 448 GNALLFLIPEELQ 460 (591)
Q Consensus 448 g~~i~~~~~~e~~ 460 (591)
|.|++++++.+..
T Consensus 379 G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 379 GEAIIIVGKRDRE 391 (702)
T ss_dssp EEEEEECCGGGHH
T ss_pred ceEEEEecCccHH
Confidence 9999999988743
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.5e-45 Score=416.15 Aligned_cols=337 Identities=16% Similarity=0.163 Sum_probs=212.7
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
-+|+..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 46888999999999999999999999999999999999999999887642 1226789999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccH-HHHHHHHHhC
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFE-EEMRQIMKLL 277 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~-~~~~~i~~~l 277 (591)
...++.+..++|+.........+..+++|+|+||++|.+++.......+.++++|||||||++...+.. ..+..++...
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 888999999999998777777777889999999999999998765226788999999999999875432 2222333221
Q ss_pred ---CCCCccEEEEeccCch-----------hHHHHHHhh------------------CCC-CCeEEEecCCCcccccC--
Q 007743 278 ---PKKDRQTALFSATQTK-----------KVEDLARLS------------------FQT-TPVYIDVDDGRTKVTNE-- 322 (591)
Q Consensus 278 ---~~~~~q~ll~SAT~~~-----------~~~~l~~~~------------------~~~-~~~~i~~~~~~~~~~~~-- 322 (591)
.....|++++|||++. .+..+.... +.. ....+.+..........
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1236899999999852 222222211 111 11111111000000000
Q ss_pred ---------CceeEE---------------------E-------------------------------------------
Q 007743 323 ---------GLQQGY---------------------C------------------------------------------- 329 (591)
Q Consensus 323 ---------~l~~~~---------------------~------------------------------------------- 329 (591)
.+...+ .
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000000 0
Q ss_pred -----------------------------------------------ecCchhHHHHHHHHHHh----cCCCcEEEEecC
Q 007743 330 -----------------------------------------------VVPSAKRFILLYSFLKR----NLSKKVMVFFSS 358 (591)
Q Consensus 330 -----------------------------------------------~~~~~~k~~~l~~~l~~----~~~~~~iVF~~s 358 (591)
......|+..|..+|.. ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 00012355556666654 557899999999
Q ss_pred hhhHHHHHHHHHHc------------CCCeEeccCccCHHHHHHHHHHhhc-CCccEEEEeCccccCCCCCCCcEEEEcC
Q 007743 359 CNSVKFHSELLRYI------------QVDCFDIHGKQKQQKRTTTFFDFCK-AEKGILLCTDVAARGLDIPAVDWIVQYD 425 (591)
Q Consensus 359 ~~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~R~~~~~~F~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~ 425 (591)
+..++.++..|... |..+..+||+|++.+|..+++.|++ |..+|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5567778999999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhhhhhccccccCCCCcceEEEEeChhhHH
Q 007743 426 PPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQ 460 (591)
Q Consensus 426 ~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~ 460 (591)
+|+|+..|+||+|| ||. ..|.+++|+++.+..
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCSCHHHHHTC----------CCCEEEEECCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCceEEEEEeCCcHH
Confidence 99999999999999 996 579999999987653
No 30
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.4e-44 Score=389.37 Aligned_cols=326 Identities=18% Similarity=0.269 Sum_probs=260.6
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.+|+ .|+++|..++|.++.|+ |+.++||+|||++|.+|++...+ .+..|+||+||++||.|+++++..+.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-------~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-------AGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-------TTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-------hCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 4788 99999999999999998 99999999999999999975433 25679999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh-c--------
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL-E-------- 263 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~-------- 263 (591)
.++++.+++++||.+... +....+++|+|+||++| +++|...- .+.++.+.++||||||+|+ +
T Consensus 177 ~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred hhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 999999999999987533 33444699999999999 78887542 3567889999999999998 4
Q ss_pred -------cccHHHHHHHHHhCCC--------CCccEE-----------------EEeccCchhHHHHH-----HhhCCCC
Q 007743 264 -------ANFEEEMRQIMKLLPK--------KDRQTA-----------------LFSATQTKKVEDLA-----RLSFQTT 306 (591)
Q Consensus 264 -------~~f~~~~~~i~~~l~~--------~~~q~l-----------------l~SAT~~~~~~~l~-----~~~~~~~ 306 (591)
.+|...+..|+..++. +.+|++ +||||.+..+..+. ...+..+
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d 334 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRD 334 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBT
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcc
Confidence 3688999999999982 478998 99999876443321 2222222
Q ss_pred Ce-------EEEecCC---------------------------CcccccCCce---------------------------
Q 007743 307 PV-------YIDVDDG---------------------------RTKVTNEGLQ--------------------------- 325 (591)
Q Consensus 307 ~~-------~i~~~~~---------------------------~~~~~~~~l~--------------------------- 325 (591)
.. ++.++.. ....+...+.
T Consensus 335 ~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~ 414 (922)
T 1nkt_A 335 KDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHE 414 (922)
T ss_dssp TTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred cceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHH
Confidence 11 1111110 0000111111
Q ss_pred --------------------eEEEecCchhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCcc
Q 007743 326 --------------------QGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQ 383 (591)
Q Consensus 326 --------------------~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 383 (591)
..++.+....|+..+...+.. ..+.++||||+|+..++.++..|...|+++..+||++
T Consensus 415 iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~ 494 (922)
T 1nkt_A 415 IYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY 494 (922)
T ss_dssp HHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred HhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCCh
Confidence 113445567788888887754 3467899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCC---------------------------------------------
Q 007743 384 KQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAV--------------------------------------------- 418 (591)
Q Consensus 384 ~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v--------------------------------------------- 418 (591)
.+.++..+.+.|+.| .|+||||+++||+||+.+
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888877 699999999999999975
Q ss_pred -------cEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 419 -------DWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 419 -------~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
.+||+|++|.|...|.||+|||||.| .+|.++.|++.+|.
T Consensus 573 ~V~~~GGlhVI~te~pes~riy~qr~GRTGRqG-dpG~s~fflSleD~ 619 (922)
T 1nkt_A 573 EVIEAGGLYVLGTERHESRRIDNQLRGRSGRQG-DPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGG-CCEEEEEEEETTSH
T ss_pred HHHhcCCcEEEeccCCCCHHHHHHHhcccccCC-CCeeEEEEechhHH
Confidence 59999999999999999999999975 78999999998764
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=6.8e-46 Score=429.65 Aligned_cols=317 Identities=21% Similarity=0.288 Sum_probs=249.1
Q ss_pred HHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 118 QDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 118 ~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..+||. | ++|.++||.++.|+|++++||||||||+ |++|++..+.. .+.++|||+||++||.|+++.+..+
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 358999 9 9999999999999999999999999998 99999988764 3678999999999999999999999
Q ss_pred HhhcCC----eEEEEEcCccchHH---HHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHH
Q 007743 198 LKYHSQ----TVGLVIGGSARRGE---AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEM 270 (591)
Q Consensus 198 ~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~ 270 (591)
+...+. .++.++||...... ...+.+ ++|+|+||++|++++.+ +.++++|||||||+|++ |...+
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~~ 194 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKNV 194 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccccH
Confidence 988888 89999999887663 333445 99999999999998765 56899999999999998 56788
Q ss_pred HHHHHhCC----------CCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 271 RQIMKLLP----------KKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 271 ~~i~~~l~----------~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
..++..+. ....|+++||||++.. ..+....+.. +..+.+.. .......+.+.+.. ..+...|
T Consensus 195 ~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~-~~~i~v~~--~~~~~~~i~~~~~~---~~k~~~L 267 (1054)
T 1gku_B 195 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQ-LLNFDIGS--SRITVRNVEDVAVN---DESISTL 267 (1054)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHH-HHCCCCSC--CEECCCCEEEEEES---CCCTTTT
T ss_pred HHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhc-ceEEEccC--cccCcCCceEEEec---hhHHHHH
Confidence 88887773 1367999999999987 4222222111 11122221 22334456665552 3445566
Q ss_pred HHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEE----eCccccCCCCC
Q 007743 341 YSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLC----TDVAARGLDIP 416 (591)
Q Consensus 341 ~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLva----T~~~~~GiDip 416 (591)
..++... ++++||||+++..++.++..|... +.+..+||++. .+++.|++|+.+|||| |+++++|||+|
T Consensus 268 ~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip 340 (1054)
T 1gku_B 268 SSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLP 340 (1054)
T ss_dssp HHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCT
T ss_pred HHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccC
Confidence 6677654 578999999999999999999988 99999999984 7889999999999999 99999999999
Q ss_pred CC-cEEEEcCCC--------------------------------------------------------------------
Q 007743 417 AV-DWIVQYDPP-------------------------------------------------------------------- 427 (591)
Q Consensus 417 ~v-~~VI~~~~P-------------------------------------------------------------------- 427 (591)
+| ++|||||+|
T Consensus 341 ~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (1054)
T 1gku_B 341 ERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGE 420 (1054)
T ss_dssp TTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTE
T ss_pred CcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecc
Confidence 96 999999999
Q ss_pred ---CChhhhhhhccccccCCCCcc--eEEEEeChhhHHHHHHHH
Q 007743 428 ---DEPKEYIHRVGRTARGEGARG--NALLFLIPEELQFLRYLK 466 (591)
Q Consensus 428 ---~s~~~y~qr~GR~gR~~~~~g--~~i~~~~~~e~~~~~~l~ 466 (591)
.+..+|+||+|||||.| ..| .+++|+...+...++.|.
T Consensus 421 ~~~~~~~~yiQr~GRagR~g-~~g~~~g~~~~~~~d~~~~~~l~ 463 (1054)
T 1gku_B 421 VIFPDLRTYIQGSGRTSRLF-AGGLTKGASFLLEDDSELLSAFI 463 (1054)
T ss_dssp EEEECHHHHHHHHHTTCCEE-TTEECCEEEEEECSCHHHHHHHH
T ss_pred eecCcHHHHhhhhchhhhcc-CCCCceEEEEEEecCHHHHHHHH
Confidence 78999999999999964 233 466666666666655553
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-44 Score=409.75 Aligned_cols=323 Identities=20% Similarity=0.196 Sum_probs=257.6
Q ss_pred HHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 118 QDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 118 ~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..++|. |+|+|.++|+.++.|++++++||||||||++|.+|++..+. .+.++||++||++|+.|++..+..+
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-------~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------TTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-------cCCeEEEECChHHHHHHHHHHHHHH
Confidence 345675 99999999999999999999999999999999999988763 3678999999999999999999887
Q ss_pred HhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhC
Q 007743 198 LKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLL 277 (591)
Q Consensus 198 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l 277 (591)
.. .++.++|+..... .++|+|+||++|.+++.... ..+.++++|||||||++.+.++...+..++..+
T Consensus 153 ~~----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 153 FG----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HS----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred hC----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 54 6788888876543 47999999999999887654 567899999999999999998999999999999
Q ss_pred CCCCccEEEEeccCchhHHHHHHh---hCCCCCeEEEecCCCcccccCCceeEEEecC---------c------------
Q 007743 278 PKKDRQTALFSATQTKKVEDLARL---SFQTTPVYIDVDDGRTKVTNEGLQQGYCVVP---------S------------ 333 (591)
Q Consensus 278 ~~~~~q~ll~SAT~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~---------~------------ 333 (591)
+. ..|++++|||+++.. +++.+ ... .+..+....... ..+.+++.... .
T Consensus 221 ~~-~~~il~LSATi~n~~-e~a~~l~~~~~-~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 221 PD-KVRYVFLSATIPNAM-EFAEWICKIHS-QPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp CT-TCEEEEEECCCTTHH-HHHHHHHHHHT-SCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred CC-CCeEEEEcCCCCCHH-HHHHHHHhhcC-CCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 87 899999999998754 23332 122 233333322111 11222222100 0
Q ss_pred ----------------------------------hhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCC-----
Q 007743 334 ----------------------------------AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQV----- 374 (591)
Q Consensus 334 ----------------------------------~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~----- 374 (591)
...+..+...+......++||||+++..++.++..|...++
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 11223345555555567999999999999999988876443
Q ss_pred ----------------------------------CeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE
Q 007743 375 ----------------------------------DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW 420 (591)
Q Consensus 375 ----------------------------------~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~ 420 (591)
++..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~v 453 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEE
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceE
Confidence 3788999999999999999999999999999999999999999999
Q ss_pred EEE----cCC----CCChhhhhhhccccccCCC-CcceEEEEeChh-hHHHHHHHHH
Q 007743 421 IVQ----YDP----PDEPKEYIHRVGRTARGEG-ARGNALLFLIPE-ELQFLRYLKA 467 (591)
Q Consensus 421 VI~----~~~----P~s~~~y~qr~GR~gR~~~-~~g~~i~~~~~~-e~~~~~~l~~ 467 (591)
||+ ||. |.++..|+||+|||||.|. ..|.|++++.+. +...++.+..
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 999 999 8999999999999999763 369999999875 5566666643
No 33
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.2e-47 Score=420.04 Aligned_cols=393 Identities=11% Similarity=0.125 Sum_probs=275.9
Q ss_pred cccc-CCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 103 SFDS-LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 103 ~f~~-l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.|.. +++++.+.++|... ...++|+|+.++|.++.|+|++++||||||||++|++|+++.+.. .+.++||++
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------~~~~vLvl~ 222 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK------RRLRTLILA 222 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEE
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEc
Confidence 3444 66787777776654 478899999999999999999999999999999999999998875 357899999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
|||+||.|+++.+. +..+.. .+.... .....+..+.++|.+.|...+... ..+.++++|||||||++
T Consensus 223 PtreLa~Qi~~~l~------~~~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 223 PTRVVAAEMEEALR------GLPIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp SSHHHHHHHHHHTT------TSCEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC
T ss_pred ChHHHHHHHHHHhc------CCceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC
Confidence 99999999998775 233432 111100 001123456778888887766554 35789999999999998
Q ss_pred hccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHH
Q 007743 262 LEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLY 341 (591)
Q Consensus 262 ~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~ 341 (591)
+.+|...+..++..++...+|+++||||++..+..+.. ..+..+.+..... ...+ ..++
T Consensus 290 -~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~----~~~~~~~v~~~~~---~~~~-------------~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ----SNSPIEDIEREIP---ERSW-------------NTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC----CSSCEEEEECCCC---SSCC-------------SSSC
T ss_pred -CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc----cCCceeeecccCC---HHHH-------------HHHH
Confidence 77888888888888764479999999999987653322 2344444432110 0000 1122
Q ss_pred HHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEE
Q 007743 342 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWI 421 (591)
Q Consensus 342 ~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~V 421 (591)
..+.. ..+++||||+|++.++.+++.|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| |++|
T Consensus 349 ~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 349 DWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 22333 36799999999999999999999999999999984 788899999999999999999999999997 9988
Q ss_pred --------------------EEcCCCCChhhhhhhccccccCCCCcceEEEEeC---hhhHHHHHHHHHcCCCccccccC
Q 007743 422 --------------------VQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI---PEELQFLRYLKAAKVPVKEYEFD 478 (591)
Q Consensus 422 --------------------I~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~---~~e~~~~~~l~~~~~~~~~~~~~ 478 (591)
|+|++|.+.++|+||+|||||.|+..|.+++|++ +.|...++.+... +.++...++
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~-i~l~~~~~~ 501 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK-MLLDNIYTP 501 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH-HHHTTCCCT
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH-hccccccCC
Confidence 7778899999999999999998666899999998 6776666555432 122111111
Q ss_pred hHHHHHH---HHHHHHHHHcchhHHHHHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCCCC
Q 007743 479 QKKLANV---QSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK 544 (591)
Q Consensus 479 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~p~ 544 (591)
...+..+ .......+...+.+.....++|+++++.|.- .....|.+.+.++...+.+||+..+|.
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~ll~~~~~-~~~l~~~v~~~~l~~~~~~w~~~~~~~ 569 (618)
T 2whx_A 502 EGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDL-PVWLSYKVASAGISYKDREWCFTGERN 569 (618)
T ss_dssp TCCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTTCC-CHHHHHHHHHTTCCTTCCGGGTCCCGG
T ss_pred cchhhhccchhhhccccCCceeEccHHHHHHHHHHhhccCC-cHHHHHHHHhcCCCccceeEEecCCCc
Confidence 1100000 0001111233455566778899999876442 111225566666666778899999996
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3e-44 Score=412.63 Aligned_cols=339 Identities=16% Similarity=0.166 Sum_probs=210.6
Q ss_pred HHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 116 AIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 116 ~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
...-.|+..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+.
T Consensus 240 ~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~--~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 240 PPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--AGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp --------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC--SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc--ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 33345788999999999999999999999999999999999999988765431 1126779999999999999999999
Q ss_pred HHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc-HHHHHHHH
Q 007743 196 DLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF-EEEMRQIM 274 (591)
Q Consensus 196 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f-~~~~~~i~ 274 (591)
+++...++.+..++|+.........+..+++|+|+||++|.+++.......+.++++|||||||++...+. ...+..++
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 99988889999999998776666666677999999999999999876533678899999999999987542 23332333
Q ss_pred HhC---CCCCccEEEEeccCch-----------hHHHHHHh------------------hCCCCCeEE-EecCCCccccc
Q 007743 275 KLL---PKKDRQTALFSATQTK-----------KVEDLARL------------------SFQTTPVYI-DVDDGRTKVTN 321 (591)
Q Consensus 275 ~~l---~~~~~q~ll~SAT~~~-----------~~~~l~~~------------------~~~~~~~~i-~~~~~~~~~~~ 321 (591)
... .....|++++|||+.. .+..+... ++..+.... ...........
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 321 1235899999999852 22222211 111111111 11100000000
Q ss_pred C--------------------C---ceeEE---------E----------------------------------------
Q 007743 322 E--------------------G---LQQGY---------C---------------------------------------- 329 (591)
Q Consensus 322 ~--------------------~---l~~~~---------~---------------------------------------- 329 (591)
. . +.... .
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 00000 0
Q ss_pred --------------------------------------------------ecCchhHHHHHHHHHHh----cCCCcEEEE
Q 007743 330 --------------------------------------------------VVPSAKRFILLYSFLKR----NLSKKVMVF 355 (591)
Q Consensus 330 --------------------------------------------------~~~~~~k~~~l~~~l~~----~~~~~~iVF 355 (591)
......|+..|..+|.. ....++|||
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF 637 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 00012345556666654 346899999
Q ss_pred ecChhhHHHHHHHHHHc------------CCCeEeccCccCHHHHHHHHHHhhc-CCccEEEEeCccccCCCCCCCcEEE
Q 007743 356 FSSCNSVKFHSELLRYI------------QVDCFDIHGKQKQQKRTTTFFDFCK-AEKGILLCTDVAARGLDIPAVDWIV 422 (591)
Q Consensus 356 ~~s~~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~R~~~~~~F~~-g~~~vLvaT~~~~~GiDip~v~~VI 422 (591)
|+++..++.++..|... |..+..+||+|++.+|..+++.|++ |..+|||||+++++|||+|+|++||
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI 717 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE
T ss_pred eCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE
Confidence 99999999999999986 5566677999999999999999999 9999999999999999999999999
Q ss_pred EcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 423 QYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 423 ~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
+||+|+|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 718 ~yD~p~s~~~~iQr~GR-GR~--~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 718 LYEYSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 751 (936)
T ss_dssp EESCCSCSHHHHCC----------CCCEEEEESCHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC--CCCEEEEEEeCCCH
Confidence 99999999999999999 996 47999999988654
No 35
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.9e-46 Score=393.55 Aligned_cols=373 Identities=12% Similarity=0.125 Sum_probs=259.3
Q ss_pred CCCCCcHHHHHhhccccCCCcE-EEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 121 GFQFMTQIQARAVPPLMVGKDV-LGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 121 ~~~~~~~~Q~~~i~~il~g~dv-lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
|+..++|+|+ +||.++.++++ +++||||||||++|++|++..+.. .+.++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~---- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL------RRLRTLILAPTRVVAAEMEEALR---- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTT----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh------cCCcEEEECCCHHHHHHHHHHhc----
Confidence 7889999985 89999999887 899999999999999999987765 35789999999999999998774
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~ 279 (591)
+..+....+.... ....+..|.++|++.|..++... ..+.++++|||||||++ +.++...+..+......
T Consensus 70 --g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp --TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred --Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 3333322221111 11234679999999998888755 35789999999999977 44444433333333222
Q ss_pred CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecCh
Q 007743 280 KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSC 359 (591)
Q Consensus 280 ~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~ 359 (591)
...|+++||||++..+..+ +...+.++.+..... ... +. .+..++.. ..+++||||+++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~----~~~~~~~~~~~~~~p---~~~----~~---------~~~~~l~~-~~~~~lVF~~s~ 198 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF----PQSNSPIEDIEREIP---ERS----WN---------TGFDWITD-YQGKTVWFVPSI 198 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS----CCCSSCEEEEECCCC---SSC----CS---------SSCHHHHH-CCSCEEEECSSH
T ss_pred CCceEEEEccCCCccchhh----hcCCCceEecCccCC---chh----hH---------HHHHHHHh-CCCCEEEEcCCH
Confidence 3789999999998765332 222344443321110 000 00 11223333 367999999999
Q ss_pred hhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcC--------------
Q 007743 360 NSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYD-------------- 425 (591)
Q Consensus 360 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~-------------- 425 (591)
..++.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|||+|+ ++|||||
T Consensus 199 ~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 199 KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 9999999999999999999999765 46899999999999999999999999999 9999999
Q ss_pred ------CCCChhhhhhhccccccCCCCcceEEEEeChhhH---HH----HHHHHHcCCCccccccChHHHHHHHHHHHHH
Q 007743 426 ------PPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL---QF----LRYLKAAKVPVKEYEFDQKKLANVQSHLEKL 492 (591)
Q Consensus 426 ------~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~---~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (591)
+|.+..+|+||+|||||.|...|.+++|+...+. .. ...+...+..+...-+..- . ..+......
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~e~~~~~~ 351 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTL-F-GPEREKTQA 351 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCCCCC-C-GGGGGGCCC
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHhHHhh-c-CCchhhccC
Confidence 9999999999999999976447899888754321 11 1222223332221100000 0 000000011
Q ss_pred HHcchhHHHHHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCCC
Q 007743 493 VANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPP 543 (591)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~p 543 (591)
....+.+....+++|..++..|..+. ...|.+...++...+.+||+..||
T Consensus 352 ~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 401 (451)
T 2jlq_A 352 IDGEFRLRGEQRKTFVELMRRGDLPV-WLSYKVASAGISYKDREWCFTGER 401 (451)
T ss_dssp CTTTTCCCHHHHHHHHHHHHTSCCCH-HHHHHHHHTTCCTTCCGGGTCSCG
T ss_pred CCcccccCchhHHHHHHHHhhcCCcH-HHhHHHHHcCCCcccchhhhcCCC
Confidence 12234455667789999988775443 456777777777777899998888
No 36
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-42 Score=374.54 Aligned_cols=323 Identities=19% Similarity=0.219 Sum_probs=245.7
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.++......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 6899999999999999 99999999999999999999887752 3567999999999999999999987644445
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCcc
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q 283 (591)
.+..+.|+..... .......++|+|+||++|...+.... +.+.++++||+||||++.+......+...+....+ ..+
T Consensus 82 ~v~~~~g~~~~~~-~~~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~-~~~ 158 (494)
T 1wp9_A 82 KIVALTGEKSPEE-RSKAWARAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK-NPL 158 (494)
T ss_dssp GEEEECSCSCHHH-HHHHHHHCSEEEECHHHHHHHHHTTS-CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS-SCC
T ss_pred heEEeeCCcchhh-hhhhccCCCEEEecHHHHHHHHhcCC-cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC-CCe
Confidence 7888888776554 33444568999999999999887654 66789999999999999864333344444444444 688
Q ss_pred EEEEeccCchhHHH---HHHhhCCCCCeEEEecCCCcc-c--ccCCceeEEEe---------------------------
Q 007743 284 TALFSATQTKKVED---LARLSFQTTPVYIDVDDGRTK-V--TNEGLQQGYCV--------------------------- 330 (591)
Q Consensus 284 ~ll~SAT~~~~~~~---l~~~~~~~~~~~i~~~~~~~~-~--~~~~l~~~~~~--------------------------- 330 (591)
++++|||+...... +.... ......+........ . ...........
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNL-GIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG 237 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHT-TCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCcHHHHHHHHhc-ChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999854333 33322 111111110000000 0 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007743 331 -------------------------------------------------------------------------------- 330 (591)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (591)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (494)
T 1wp9_A 238 LLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK 317 (494)
T ss_dssp SSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhh
Confidence
Q ss_pred ---------------------cCchhHHHHHHHHHHh----cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccC----
Q 007743 331 ---------------------VPSAKRFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHG---- 381 (591)
Q Consensus 331 ---------------------~~~~~k~~~l~~~l~~----~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~---- 381 (591)
.....|+..+..++.. ..+.++||||+++..++.++..|...++.+..+||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~ 397 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASK 397 (494)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccc
Confidence 0223355666677766 46889999999999999999999999999999999
Q ss_pred ----ccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChh
Q 007743 382 ----KQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE 457 (591)
Q Consensus 382 ----~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~ 457 (591)
+|+..+|..+++.|++|..+|||||+++++|||+|++++||+||+|+++..|+||+||+||.| . |.+++|+++.
T Consensus 398 ~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g-~-g~~~~l~~~~ 475 (494)
T 1wp9_A 398 ENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-P-GRVIILMAKG 475 (494)
T ss_dssp -------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-C-SEEEEEEETT
T ss_pred cccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC-C-ceEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999975 4 9999999986
Q ss_pred hH
Q 007743 458 EL 459 (591)
Q Consensus 458 e~ 459 (591)
+.
T Consensus 476 t~ 477 (494)
T 1wp9_A 476 TR 477 (494)
T ss_dssp SH
T ss_pred CH
Confidence 53
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.7e-43 Score=403.21 Aligned_cols=328 Identities=20% Similarity=0.227 Sum_probs=252.7
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.++| .|+++|.++|+.++.|+|++++||||||||++|++|+...+. .+.++||++|+++|+.|+++.+.++.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-------~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-------NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-------TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 3456 489999999999999999999999999999999999887653 36789999999999999999888653
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
. +..++.++|+..... .++|+|+||++|.+++.... ..+.++++|||||||++.+++|...+..++..++
T Consensus 107 ~--~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 107 D--DVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp ----CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred C--CCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 2 578888888876543 37999999999999887655 5678999999999999999999999999999998
Q ss_pred CCCccEEEEeccCchhHHHHHHhhCC--CCCeEEEecCCCcccc------------------------------------
Q 007743 279 KKDRQTALFSATQTKKVEDLARLSFQ--TTPVYIDVDDGRTKVT------------------------------------ 320 (591)
Q Consensus 279 ~~~~q~ll~SAT~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~------------------------------------ 320 (591)
. ..|++++|||+++.. ++..+... ..+..+.....+....
T Consensus 177 ~-~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 177 Q-HVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp T-TCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred c-CCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 7 899999999998764 33332210 0111111111000000
Q ss_pred -----------------------------------------------------cCCceeEEEecCchhHHHHHHHHHHhc
Q 007743 321 -----------------------------------------------------NEGLQQGYCVVPSAKRFILLYSFLKRN 347 (591)
Q Consensus 321 -----------------------------------------------------~~~l~~~~~~~~~~~k~~~l~~~l~~~ 347 (591)
......++...+...+...+..++...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 000001112223344566777888887
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCC---------------------------------------CeEeccCccCHHHH
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQV---------------------------------------DCFDIHGKQKQQKR 388 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~lh~~~~~~~R 388 (591)
...++||||+++..|+.++..|...++ ++..+||+|++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 788999999999999999999876554 57899999999999
Q ss_pred HHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCC---------ChhhhhhhccccccCC-CCcceEEEEeC--h
Q 007743 389 TTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPD---------EPKEYIHRVGRTARGE-GARGNALLFLI--P 456 (591)
Q Consensus 389 ~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~---------s~~~y~qr~GR~gR~~-~~~g~~i~~~~--~ 456 (591)
..+++.|.+|.++|||||+++++|||+|+ ..||++++|. ++.+|+||+|||||.| ...|.+++++. +
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~ 493 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSP 493 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSC
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCc
Confidence 99999999999999999999999999999 5555555554 9999999999999976 35788998884 3
Q ss_pred hhHHHHHHHHH
Q 007743 457 EELQFLRYLKA 467 (591)
Q Consensus 457 ~e~~~~~~l~~ 467 (591)
.+...++.+..
T Consensus 494 ~~~~~~~~~i~ 504 (997)
T 4a4z_A 494 LSIATFKEVTM 504 (997)
T ss_dssp CCHHHHHHHHH
T ss_pred chHHHHHHHhc
Confidence 45556665543
No 38
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-46 Score=398.62 Aligned_cols=354 Identities=15% Similarity=0.188 Sum_probs=240.4
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
++++|+|++++||||||||++|++|+++.+.. .+.++||++||++||.|+++.+..+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~-- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF-- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc--
Confidence 56789999999999999999999999998765 3578999999999999999887632 233211110
Q ss_pred hHHHHHHhcCCCEEEeCchHHHHHHhcCC-------CCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEE
Q 007743 215 RGEAERIVKGVNLLVATPGRLLDHLQNTK-------GFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALF 287 (591)
Q Consensus 215 ~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-------~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~ 287 (591)
-.|+||+++++++.... ...+.++++||+||||++ +.+|...+..+...++....|+++|
T Consensus 70 ------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (440)
T 1yks_A 70 ------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILM 136 (440)
T ss_dssp ------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred ------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEE
Confidence 03788877654433221 123789999999999998 4444434333333333337899999
Q ss_pred eccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHH
Q 007743 288 SATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE 367 (591)
Q Consensus 288 SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~ 367 (591)
|||+++.+..+... ..+.. .+.. .++..... .++..+.. ..+++||||++++.++.+++
T Consensus 137 SAT~~~~~~~~~~~---~~~~~-~~~~---------------~~~~~~~~-~~~~~l~~-~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 137 TATPPGTSDEFPHS---NGEIE-DVQT---------------DIPSEPWN-TGHDWILA-DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp CSSCTTCCCSSCCC---SSCEE-EEEC---------------CCCSSCCS-SSCHHHHH-CCSCEEEECSCHHHHHHHHH
T ss_pred eCCCCchhhhhhhc---CCCee-Eeee---------------ccChHHHH-HHHHHHHh-cCCCEEEEeCCHHHHHHHHH
Confidence 99998875433321 11221 1110 01110000 01122222 26799999999999999999
Q ss_pred HHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE-------------------cCCCC
Q 007743 368 LLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ-------------------YDPPD 428 (591)
Q Consensus 368 ~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~-------------------~~~P~ 428 (591)
.|...++.+..+|| .+|..+++.|++|+.+|||||+++++|||+| +++||+ |+.|.
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 99999999999999 4688999999999999999999999999999 999996 88999
Q ss_pred ChhhhhhhccccccCCCCcceEEEEe---ChhhHHHHHHHHH----cCCCccccccChHHHHHHHHHHHHHHHcchhHHH
Q 007743 429 EPKEYIHRVGRTARGEGARGNALLFL---IPEELQFLRYLKA----AKVPVKEYEFDQKKLANVQSHLEKLVANNYYLNK 501 (591)
Q Consensus 429 s~~~y~qr~GR~gR~~~~~g~~i~~~---~~~e~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (591)
+.++|+||+||+||.|+..|.|++|+ ++.+..+++.+.. ....+....... .....+..+ ..+...+.+..
T Consensus 271 ~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~-~~~~~~~~l~~ 348 (440)
T 1yks_A 271 SASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGMVAP-LYGVEGTKT-PVSPGEMRLRD 348 (440)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGCCCC-CSTTHHHHS-SSCTTTTCCCH
T ss_pred CHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccccccc-ccchhhccC-CCCCcccccCh
Confidence 99999999999999766789999997 5666666655543 222221111100 000011111 12445667778
Q ss_pred HHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCCCC
Q 007743 502 SAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK 544 (591)
Q Consensus 502 ~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~p~ 544 (591)
.++++|.++++.|....+ ..|.+.+.++...+.+||+..||.
T Consensus 349 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 390 (440)
T 1yks_A 349 DQRKVFRELVRNCDLPVW-LSWQVAKAGLKTNDRKWCFEGPEE 390 (440)
T ss_dssp HHHHHHHHHHHTTCCCHH-HHHHHHHTTCCTTCCGGGSCSCGG
T ss_pred hHHHHHHHHHHhcCCchh-hhhhhhhcCCceeeeeEEecCCCc
Confidence 888999999987654332 346777778888889999999997
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.3e-42 Score=413.03 Aligned_cols=353 Identities=16% Similarity=0.184 Sum_probs=270.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccC-CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQARAVPPLMV-GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
|.....++|...+|..|+|+|.++++.++. ++|++++||||||||++|.+|+++.+.+. ++.++|||+|+|+||
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-----~~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-----SEGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-----TTCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-----CCCEEEEEcChHHHH
Confidence 556778888889999999999999999975 56899999999999999999999998763 466799999999999
Q ss_pred HHHHHHHHH-HHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCC-ccCCceEEEEeCchhhhccc
Q 007743 188 IQTHAVAKD-LLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGF-IYKNLKCLVIDEADRILEAN 265 (591)
Q Consensus 188 ~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~-~~~~l~~lVlDEah~l~~~~ 265 (591)
.|++..+.+ +....+..++.++|+..... ....+++|+|||||++..++++.... .++++++||+||+|+|.+ .
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~ 1061 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-E 1061 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-T
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-C
Confidence 999999875 45567889999888765332 23355899999999998777654322 368899999999998876 3
Q ss_pred cHHHHHHHHHh-------CCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCc---hh
Q 007743 266 FEEEMRQIMKL-------LPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPS---AK 335 (591)
Q Consensus 266 f~~~~~~i~~~-------l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~---~~ 335 (591)
.+..+..++.. ++. +.|++++|||+++ ..+++.+.-........+... ..+..+..++...+. ..
T Consensus 1062 rg~~le~il~rl~~i~~~~~~-~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~---~RPvpL~~~i~~~~~~~~~~ 1136 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIER-PIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN---VRPVPLELHIQGFNISHTQT 1136 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSS-CCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG---GCSSCEEEEEEEECCCSHHH
T ss_pred CCccHHHHHHHHHHHHhhcCC-CceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC---CCCCCeEEEEEeccCCCchh
Confidence 45555555433 344 7899999999986 467777543332333333221 122334433332222 22
Q ss_pred HH----HHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHc----------------------------------CCCe
Q 007743 336 RF----ILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYI----------------------------------QVDC 376 (591)
Q Consensus 336 k~----~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~----------------------------------~~~~ 376 (591)
++ ..++..+.. ...+++||||+|+..|+.++..|... ..++
T Consensus 1137 ~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GI 1216 (1724)
T 4f92_B 1137 RLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGV 1216 (1724)
T ss_dssp HHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTE
T ss_pred hhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCE
Confidence 21 123333333 45789999999999998887666321 3468
Q ss_pred EeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----------cCCCCChhhhhhhccccccCC-C
Q 007743 377 FDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----------YDPPDEPKEYIHRVGRTARGE-G 445 (591)
Q Consensus 377 ~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----------~~~P~s~~~y~qr~GR~gR~~-~ 445 (591)
..+||+|++.+|..+.+.|++|.++|||||+++++|||+|++.+||. ...|.++.+|+||+|||||.| +
T Consensus 1217 a~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1217 GYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 89999999999999999999999999999999999999999999993 234778999999999999986 3
Q ss_pred CcceEEEEeChhhHHHHHHHHHcCCCcccc
Q 007743 446 ARGNALLFLIPEELQFLRYLKAAKVPVKEY 475 (591)
Q Consensus 446 ~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 475 (591)
..|.|++++.+.+..+++.+...+.|+++.
T Consensus 1297 ~~G~avll~~~~~~~~~~~ll~~~~pveS~ 1326 (1724)
T 4f92_B 1297 DEGRCVIMCQGSKKDFFKKFLYEPLPVESH 1326 (1724)
T ss_dssp SCEEEEEEEEGGGHHHHHHHTTSCBCCCCC
T ss_pred CceEEEEEecchHHHHHHHHhCCCCceeee
Confidence 579999999999999998887777776543
No 40
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.5e-44 Score=400.85 Aligned_cols=317 Identities=19% Similarity=0.217 Sum_probs=221.5
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHH-HHHHHHHHhhcC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQT-HAVAKDLLKYHS 202 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~-~~~~~~~~~~~~ 202 (591)
.|+|+|.++++.++.|+|+++.+|||+|||++|++|+++.+...... ..+.++|||+|+++|+.|+ ++.+.+++.. +
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-TCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-CCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 69999999999999999999999999999999999999888764221 1236799999999999999 9999988765 4
Q ss_pred CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhc-----CCCCccCCceEEEEeCchhhhccc-cHHHHHHHHHh
Q 007743 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQN-----TKGFIYKNLKCLVIDEADRILEAN-FEEEMRQIMKL 276 (591)
Q Consensus 203 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~-----~~~~~~~~l~~lVlDEah~l~~~~-f~~~~~~i~~~ 276 (591)
..+..+.|+.........+...++|+|+||++|.+++.. ...+.+.++++|||||||++...+ +...+..++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 789999999887776667778899999999999988842 223567889999999999986533 22223322222
Q ss_pred C------------CCCCccEEEEeccCchh-----------HHHHHHhhCC-----------------CCCe--EEEecC
Q 007743 277 L------------PKKDRQTALFSATQTKK-----------VEDLARLSFQ-----------------TTPV--YIDVDD 314 (591)
Q Consensus 277 l------------~~~~~q~ll~SAT~~~~-----------~~~l~~~~~~-----------------~~~~--~i~~~~ 314 (591)
. ..+..+++++|||++.. +..+...... ..|. +.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 00257899999999872 2222221111 0111 111000
Q ss_pred CCccc-------------------ccCCce-eEEE---------------------------------------------
Q 007743 315 GRTKV-------------------TNEGLQ-QGYC--------------------------------------------- 329 (591)
Q Consensus 315 ~~~~~-------------------~~~~l~-~~~~--------------------------------------------- 329 (591)
..... ...... +.|.
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000 0000
Q ss_pred -------------------------ecC--------------------------chhHHHHHHHHHHh----cC-CCcEE
Q 007743 330 -------------------------VVP--------------------------SAKRFILLYSFLKR----NL-SKKVM 353 (591)
Q Consensus 330 -------------------------~~~--------------------------~~~k~~~l~~~l~~----~~-~~~~i 353 (591)
... ...|+..|..+|.. .. ..++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 000 00111122233332 23 78999
Q ss_pred EEecChhhHHHHHHHHHHc------CCCeEeccCc--------cCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCc
Q 007743 354 VFFSSCNSVKFHSELLRYI------QVDCFDIHGK--------QKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVD 419 (591)
Q Consensus 354 VF~~s~~~~~~l~~~L~~~------~~~~~~lh~~--------~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~ 419 (591)
|||+++..++.++..|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|+|+
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhcccccc
Q 007743 420 WIVQYDPPDEPKEYIHRVGRTAR 442 (591)
Q Consensus 420 ~VI~~~~P~s~~~y~qr~GR~gR 442 (591)
+||+||+|+|+..|+||+||+||
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr 507 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARA 507 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCS
T ss_pred EEEEeCCCCCHHHHHHHcCCCCC
Confidence 99999999999999999999766
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-42 Score=385.98 Aligned_cols=318 Identities=22% Similarity=0.274 Sum_probs=238.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhhccccCC------CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 111 QHTFRAIQDMGFQFMTQIQARAVPPLMVG------KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 111 ~~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
+.+.+.+..++| .||++|.++|+.++.+ .+++++||||||||++|++|+++.+.. +.+++|++||+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-------g~qvlvlaPtr 427 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------TSCEEEECSCH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCcH
Confidence 455666788999 8999999999998865 599999999999999999999988753 57899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH---HHHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 185 ELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE---AERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 185 eLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||.|+++.+.++....++.+..++|+...... ...+.. .++|+|+||+.+.+. +.+.++++||+||+|+
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED------VHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC------CCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh------hhccCCceEEecccch
Confidence 999999999999988888999999999876543 233444 489999999987542 4578899999999998
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHH
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILL 340 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 340 (591)
+.... ...+.... ...++++||||+++....+...... ....+.... .....+... ..+. .+...+
T Consensus 502 ~g~~q-----r~~l~~~~-~~~~vL~mSATp~p~tl~~~~~g~~-~~s~i~~~p----~~r~~i~~~--~~~~-~~~~~l 567 (780)
T 1gm5_A 502 FGVKQ-----REALMNKG-KMVDTLVMSATPIPRSMALAFYGDL-DVTVIDEMP----PGRKEVQTM--LVPM-DRVNEV 567 (780)
T ss_dssp C----------CCCCSSS-SCCCEEEEESSCCCHHHHHHHTCCS-SCEEECCCC----SSCCCCEEC--CCCS-STHHHH
T ss_pred hhHHH-----HHHHHHhC-CCCCEEEEeCCCCHHHHHHHHhCCc-ceeeeeccC----CCCcceEEE--Eecc-chHHHH
Confidence 63211 11111222 2689999999988766544432111 112221111 011112211 1222 223334
Q ss_pred HHHHHh--cCCCcEEEEecCh--------hhHHHHHHHHHH---cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 341 YSFLKR--NLSKKVMVFFSSC--------NSVKFHSELLRY---IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 341 ~~~l~~--~~~~~~iVF~~s~--------~~~~~l~~~L~~---~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
+..+.. ..+.+++|||+++ ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 568 ~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~ 647 (780)
T 1gm5_A 568 YEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT 647 (780)
T ss_dssp HHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS
T ss_pred HHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC
Confidence 444443 3467899999976 456778888877 368899999999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEEcCCCC-ChhhhhhhccccccCCCCcceEEEEeChh
Q 007743 408 VAARGLDIPAVDWIVQYDPPD-EPKEYIHRVGRTARGEGARGNALLFLIPE 457 (591)
Q Consensus 408 ~~~~GiDip~v~~VI~~~~P~-s~~~y~qr~GR~gR~~~~~g~~i~~~~~~ 457 (591)
++++|||+|++++||++++|. +.+.|.||+||+||. +..|.|++++.+.
T Consensus 648 vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~-g~~g~~ill~~~~ 697 (780)
T 1gm5_A 648 VIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRG-GQEAYCFLVVGDV 697 (780)
T ss_dssp CCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCS-STTCEEECCCCSC
T ss_pred CCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcC-CCCCEEEEEECCC
Confidence 999999999999999999996 688899999999996 4789999999853
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-41 Score=406.90 Aligned_cols=346 Identities=20% Similarity=0.251 Sum_probs=262.7
Q ss_pred CCCCCcHHHHHhhcccc-CCCcEEEEccCCCCchHHhHHHHHHHHHhcccC----CCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 121 GFQFMTQIQARAVPPLM-VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA----PRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 121 ~~~~~~~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~----~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
||..|+++|++++|.++ .++|++++||||||||++|.+|+++.+.+.... ...+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999887 578999999999999999999999999764321 2356789999999999999999999
Q ss_pred HHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCC-CccCCceEEEEeCchhhhccccHHHHHHHH
Q 007743 196 DLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKG-FIYKNLKCLVIDEADRILEANFEEEMRQIM 274 (591)
Q Consensus 196 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-~~~~~l~~lVlDEah~l~~~~f~~~~~~i~ 274 (591)
+.....++.|+.++|+...... ....++|+||||+++..++..... -.++++++|||||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9888899999999998765432 134689999999998655544321 1368899999999997765 5666666554
Q ss_pred Hh-------CCCCCccEEEEeccCchhHHHHHHhhCCCCCe-EEEecCCCcccccCCceeEEEecCch---hHHH----H
Q 007743 275 KL-------LPKKDRQTALFSATQTKKVEDLARLSFQTTPV-YIDVDDGRTKVTNEGLQQGYCVVPSA---KRFI----L 339 (591)
Q Consensus 275 ~~-------l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~~~~~~~~---~k~~----~ 339 (591)
.. ++. ..|++++|||+++ ..+++.+.-...+. ...+.. ...+..+.+.+...... .+.. .
T Consensus 232 ~rl~~~~~~~~~-~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~---~~RPvpL~~~~~~~~~~~~~~~~~~~~~~ 306 (1724)
T 4f92_B 232 ARAIRNIEMTQE-DVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDN---SFRPVPLEQTYVGITEKKAIKRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHTC-CCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCG---GGCSSCEEEECCEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECC---CCccCccEEEEeccCCcchhhhhHHHHHH
Confidence 32 344 7899999999986 56677643221111 111111 11233455544433322 1222 2
Q ss_pred HHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHc-------------------------------------CCCeEeccC
Q 007743 340 LYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYI-------------------------------------QVDCFDIHG 381 (591)
Q Consensus 340 l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lh~ 381 (591)
++..+.. ...+++||||+|++.|+.++..|... ..++..+||
T Consensus 307 ~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHa 386 (1724)
T 4f92_B 307 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA 386 (1724)
T ss_dssp HHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECS
T ss_pred HHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcC
Confidence 2333333 33678999999999998888777531 245789999
Q ss_pred ccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE----cC------CCCChhhhhhhccccccCC-CCcceE
Q 007743 382 KQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ----YD------PPDEPKEYIHRVGRTARGE-GARGNA 450 (591)
Q Consensus 382 ~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~------~P~s~~~y~qr~GR~gR~~-~~~g~~ 450 (591)
+|++.+|..+.+.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.| +..|.+
T Consensus 387 gL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ 466 (1724)
T 4f92_B 387 GMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEG 466 (1724)
T ss_dssp SSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEE
Confidence 999999999999999999999999999999999999999996 54 3568999999999999976 467999
Q ss_pred EEEeChhhHHHHHHHHHcCCCcccc
Q 007743 451 LLFLIPEELQFLRYLKAAKVPVKEY 475 (591)
Q Consensus 451 i~~~~~~e~~~~~~l~~~~~~~~~~ 475 (591)
+++..+.+......+.....++++.
T Consensus 467 ii~~~~~~~~~~~~ll~~~~pieS~ 491 (1724)
T 4f92_B 467 ILITSHGELQYYLSLLNQQLPIESQ 491 (1724)
T ss_dssp EEEEESTTCCHHHHHTTTCSCCCCC
T ss_pred EEEecchhHHHHHHHHcCCCcchhh
Confidence 9999998887777776666666654
No 43
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.3e-44 Score=398.30 Aligned_cols=370 Identities=14% Similarity=0.207 Sum_probs=244.3
Q ss_pred HHHHCCCC-----CCcHHHH-----Hhhcccc------CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 116 AIQDMGFQ-----FMTQIQA-----RAVPPLM------VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 116 ~l~~~~~~-----~~~~~Q~-----~~i~~il------~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
+|..+||. .||++|+ ++||.++ .|+|++++||||||||++|++|+++.+.. .+.++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------~~~~~li 275 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------KRLRTAV 275 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH------TTCCEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEE
Confidence 55567777 8999999 9999998 89999999999999999999999988765 3578999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH---------HHHHhcCCCCccCCc
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL---------LDHLQNTKGFIYKNL 250 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L---------~~~l~~~~~~~~~~l 250 (591)
++||++||.|+++.+..+ + +....+... .++||+++ ...+... ..+.++
T Consensus 276 laPTr~La~Q~~~~l~~~----~--i~~~~~~l~--------------~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l 333 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----P--VRYLTPAVQ--------------REHSGNEIVDVMCHATLTHRLMSP--LRVPNY 333 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----C--CEECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCC
T ss_pred EccHHHHHHHHHHHHhcC----C--eeeeccccc--------------ccCCHHHHHHHHHhhhhHHHHhcc--cccccc
Confidence 999999999999877633 1 211111000 14555544 3333332 357899
Q ss_pred eEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEe
Q 007743 251 KCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCV 330 (591)
Q Consensus 251 ~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 330 (591)
++|||||||++ +..+...+..+...++....|+++||||+++.+..+... ..+. ..+...
T Consensus 334 ~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i-~~v~~~--------------- 393 (673)
T 2wv9_A 334 NLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPV-HDVSSE--------------- 393 (673)
T ss_dssp SEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCE-EEEECC---------------
T ss_pred eEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCce-EEEeee---------------
Confidence 99999999998 323333333344433323789999999999775433221 1122 221110
Q ss_pred cCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccc
Q 007743 331 VPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA 410 (591)
Q Consensus 331 ~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 410 (591)
.+..... .++..+.. ..+++||||++++.++.++..|...++.+..+||. +|..+++.|++|+.+|||||++++
T Consensus 394 ~~~~~~~-~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e 467 (673)
T 2wv9_A 394 IPDRAWS-SGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE 467 (673)
T ss_dssp CCSSCCS-SCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGG
T ss_pred cCHHHHH-HHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhh
Confidence 0000000 11122222 47899999999999999999999999999999993 789999999999999999999999
Q ss_pred cCCCCCCCcEEEE--------------------cCCCCChhhhhhhccccccCCCCcceEEEEe---ChhhHHHHHHHHH
Q 007743 411 RGLDIPAVDWIVQ--------------------YDPPDEPKEYIHRVGRTARGEGARGNALLFL---IPEELQFLRYLKA 467 (591)
Q Consensus 411 ~GiDip~v~~VI~--------------------~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~---~~~e~~~~~~l~~ 467 (591)
+|||+| +++||| |++|.+.++|+||+||+||.++..|.|++|+ .+.+..+++.+..
T Consensus 468 ~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 468 MGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp TTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred cceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 999999 999998 6799999999999999999756789999996 4666544444422
Q ss_pred c----CCCccc-cccChHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCC
Q 007743 468 A----KVPVKE-YEFDQKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSP 542 (591)
Q Consensus 468 ~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~ 542 (591)
. ...+.. +.... ....+..+.. +..++.+...++++|.+++..+... ....|.+....+.....+||+..+
T Consensus 547 ~~~l~~~~~~~g~~~a~--~~~~q~~~~~-~~~~~~l~~~a~~~~~~ll~~~~~~-~~l~~~~a~~~l~~~~~~w~~~~~ 622 (673)
T 2wv9_A 547 KILLDNIHLPNGLVAQL--YGPERDKTYT-MDGEYRLRGEERKTFLELIKTADLP-VWLAYKVASNGIQYNDRKWCFDGP 622 (673)
T ss_dssp HHHHHTSCBTTTBCCCC--CGGGGGGCCC-CTTTTCCCHHHHHHHHHHHHTSCCC-HHHHHHHHHHTCCSSCCGGGTSSC
T ss_pred HHhhhhccCCchhhhhc--cchhhhcccc-chhhhhHHHHHHHHHHHHHhccCCc-hhHHHHHHHhcccccCceeEeeCC
Confidence 1 111100 00000 0000111111 2345566777888888888754322 111122222222233456788877
Q ss_pred CC
Q 007743 543 PK 544 (591)
Q Consensus 543 p~ 544 (591)
+.
T Consensus 623 ~~ 624 (673)
T 2wv9_A 623 RS 624 (673)
T ss_dssp TT
T ss_pred Cc
Confidence 76
No 44
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.4e-43 Score=377.35 Aligned_cols=359 Identities=15% Similarity=0.168 Sum_probs=244.5
Q ss_pred hccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCc
Q 007743 133 VPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGS 212 (591)
Q Consensus 133 i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~ 212 (591)
...+..+++++++||||||||++|++|+++.+.. .+.++||++|||+||.|+++.+. +..+....+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~ 82 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAV 82 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC---
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEECchHHHHHHHHHHhc------CceEeEEeccc
Confidence 4556788999999999999999999999988765 35789999999999999998876 33333222211
Q ss_pred cchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh-----hhccccHHHHHHHHHhCCCCCccEEEE
Q 007743 213 ARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR-----ILEANFEEEMRQIMKLLPKKDRQTALF 287 (591)
Q Consensus 213 ~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~-----l~~~~f~~~~~~i~~~l~~~~~q~ll~ 287 (591)
... -..+..+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+. . + ...|+++|
T Consensus 83 ~~~-----~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~----~-~-~~~~~il~ 149 (459)
T 2z83_A 83 QRE-----HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATKV----E-L-GEAAAIFM 149 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----H-T-TSCEEEEE
T ss_pred ccC-----CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHHh----c-c-CCccEEEE
Confidence 110 1234567788999887777654 4578999999999998 55555543322 1 1 37899999
Q ss_pred eccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHH
Q 007743 288 SATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSE 367 (591)
Q Consensus 288 SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~ 367 (591)
|||++..+..+.. ...|....... ...... ..++.++... .+++||||+++..++.++.
T Consensus 150 SAT~~~~~~~~~~---~~~pi~~~~~~----~~~~~~-------------~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 150 TATPPGTTDPFPD---SNAPIHDLQDE----IPDRAW-------------SSGYEWITEY-AGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp CSSCTTCCCSSCC---CSSCEEEEECC----CCSSCC-------------SSCCHHHHHC-CSCEEEECSCHHHHHHHHH
T ss_pred EcCCCcchhhhcc---CCCCeEEeccc----CCcchh-------------HHHHHHHHhc-CCCEEEEeCChHHHHHHHH
Confidence 9999987543322 12233321110 000000 0112233333 6899999999999999999
Q ss_pred HHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEE--------------------cCCC
Q 007743 368 LLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQ--------------------YDPP 427 (591)
Q Consensus 368 ~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~--------------------~~~P 427 (591)
.|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |++|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6778999999999999999999999999999 99999 7799
Q ss_pred CChhhhhhhccccccCCCCcceEEEEeChh--hHHHHHHHHHcCCCccccccChH----HHHHHHHHHHHHHHcchhHHH
Q 007743 428 DEPKEYIHRVGRTARGEGARGNALLFLIPE--ELQFLRYLKAAKVPVKEYEFDQK----KLANVQSHLEKLVANNYYLNK 501 (591)
Q Consensus 428 ~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~--e~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 501 (591)
.+.++|+||+|||||.|...|.+++|+++. +...+..+....+.+..+..+.. .+..-...+ ..+...+.+..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~k~-~~~~~~~~l~~ 362 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNIHMPNGLVAQLYGPEREKA-FTMDGEYRLRG 362 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCCTTSCCCCCCGGGGGGC-CCCTTTTCCCH
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhhhhHHHHHhcCCChHHHHHhccCCCcccc-cccCcchhcch
Confidence 999999999999999764489999999885 32222222111111111111100 000000011 11234566777
Q ss_pred HHHHHHHHHHHHHhcCcCccccccCCcCHHHHHHHcCCCCCCC
Q 007743 502 SAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPK 544 (591)
Q Consensus 502 ~~~~~~~~~~~~y~~~~~~~~f~~~~~~~~~l~~~~g~~~~p~ 544 (591)
.++++|++|++.|-.+ ....|.+.+.++...+.+||+..||.
T Consensus 363 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
T 2z83_A 363 EEKKNFLELLRTADLP-VWLAYKVASNGIQYTDRKWCFDGPRT 404 (459)
T ss_dssp HHHHHHHHHHHTSCCC-HHHHHHHHHTTCCTTCCGGGTCSCGG
T ss_pred HHHHHHHHHHhhcCCC-hhHhHHHhhccCccccceeeeeCCCC
Confidence 8889999999877643 44557777788888888999999994
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.8e-39 Score=377.91 Aligned_cols=324 Identities=17% Similarity=0.209 Sum_probs=250.0
Q ss_pred CCCCHHHHHHH-HHCCCCCCcHHHHHhhccccC----CC--cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 107 LGLSQHTFRAI-QDMGFQFMTQIQARAVPPLMV----GK--DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 107 l~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~il~----g~--dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
++++....+.+ ..++|. +||+|.++|+.++. |+ |+++++|||+|||++|+++++..+. .+.+++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------~g~~vlv 657 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------NHKQVAV 657 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-------TTCEEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-------hCCeEEE
Confidence 45666666666 457886 69999999999886 66 9999999999999999999887653 3678999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH---HHHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEE
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE---AERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVI 255 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVl 255 (591)
++||++||.|+++.+.+.....+..+..+.+....... ...+.. .++|+|+||+.|. . .+.+.++++|||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~--~~~~~~l~lvIi 731 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGLLIV 731 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C--CccccccceEEE
Confidence 99999999999999998877777888888776554433 233444 4899999997663 2 256789999999
Q ss_pred eCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchh
Q 007743 256 DEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK 335 (591)
Q Consensus 256 DEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (591)
||||++. .....++..++. ..++++||||+++....+....+.. +..+.... .....+...+.......
T Consensus 732 DEaH~~g-----~~~~~~l~~l~~-~~~vl~lSATp~p~~l~~~~~~~~~-~~~i~~~~----~~r~~i~~~~~~~~~~~ 800 (1151)
T 2eyq_A 732 DEEHRFG-----VRHKERIKAMRA-NVDILTLTATPIPRTLNMAMSGMRD-LSIIATPP----ARRLAVKTFVREYDSMV 800 (1151)
T ss_dssp ESGGGSC-----HHHHHHHHHHHT-TSEEEEEESSCCCHHHHHHHTTTSE-EEECCCCC----CBCBCEEEEEEECCHHH
T ss_pred echHhcC-----hHHHHHHHHhcC-CCCEEEEcCCCChhhHHHHHhcCCC-ceEEecCC----CCccccEEEEecCCHHH
Confidence 9999953 233445555554 6899999999988876666554432 22222111 11122333333333322
Q ss_pred HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCC
Q 007743 336 RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL 413 (591)
Q Consensus 336 k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gi 413 (591)
....+...+ ..+++++|||+++..++.+++.|... +..+..+||+|++.+|..+++.|.+|+.+|||||+++++||
T Consensus 801 i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 801 VREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 222222222 24689999999999999999999988 78999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCC-CCChhhhhhhccccccCCCCcceEEEEeChhh
Q 007743 414 DIPAVDWIVQYDP-PDEPKEYIHRVGRTARGEGARGNALLFLIPEE 458 (591)
Q Consensus 414 Dip~v~~VI~~~~-P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e 458 (591)
|+|++++||+++. +.++.+|+||+||+||.| ..|.|++++.+.+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g-~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYAWLLTPHPK 923 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTT-BCEEEEEEECCGG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCC-CceEEEEEECCcc
Confidence 9999999999998 568999999999999964 6899999998753
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4e-41 Score=364.67 Aligned_cols=279 Identities=17% Similarity=0.159 Sum_probs=214.3
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.+.+.|..+++.+..+++++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+. .+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------g~~vLVl~PTReLA~Qia~~l~~~---~g~ 283 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------GYKVLVLNPSVAATLGFGAYMSKA---HGI 283 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------TCCEEEEESCHHHHHHHHHHHHHH---HSC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------CCeEEEEcchHHHHHHHHHHHHHH---hCC
Confidence 4566677777777788999999999999999999998752 557999999999999998866543 455
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCcc
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q 283 (591)
.++..+|+.. +..+++|+|+||++|+ .. ..+.++++++||||||| +++.+|...+..|+..++. .+|
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~-~~~ 350 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAET-AGA 350 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTT-TTC
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhh-cCC
Confidence 6777777754 2456899999999984 33 33678889999999996 5678888899999999986 455
Q ss_pred --EEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhh
Q 007743 284 --TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNS 361 (591)
Q Consensus 284 --~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~ 361 (591)
++++|||++..+. ...+....+..... ..+. ....... +.....+++||||++++.
T Consensus 351 ~llil~SAT~~~~i~-------~~~p~i~~v~~~~~----~~i~----~~~~~~~-------l~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 351 RLVVLATATPPGSVT-------VPHPNIEEVALSNT----GEIP----FYGKAIP-------IEAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp SEEEEEESSCTTCCC-------CCCTTEEEEECBSC----SSEE----ETTEEEC-------GGGSSSSEEEEECSCHHH
T ss_pred ceEEEECCCCCcccc-------cCCcceEEEeeccc----chhH----HHHhhhh-------hhhccCCcEEEEeCCHHH
Confidence 6777999997532 11222222211000 0000 0000000 122357899999999999
Q ss_pred HHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEE----------EcC------
Q 007743 362 VKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIV----------QYD------ 425 (591)
Q Consensus 362 ~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~~------ 425 (591)
++.+++.|...++.+..+||+|++.+ |.++..+|||||++++||||+| |++|| |||
T Consensus 409 ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~g 480 (666)
T 3o8b_A 409 CDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFT 480 (666)
T ss_dssp HHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCE
T ss_pred HHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccc
Confidence 99999999999999999999999875 5567779999999999999997 99998 677
Q ss_pred -----CCCChhhhhhhccccccCCCCcceEEEEeChhhHHH
Q 007743 426 -----PPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQF 461 (591)
Q Consensus 426 -----~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~ 461 (591)
+|.+.++|+||+||||| + ..|. ++|+++.+...
T Consensus 481 l~~~~~P~s~~syiQRiGRtGR-g-~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 481 IETTTVPQDAVSRSQRRGRTGR-G-RRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEEECBHHHHHHHHTTBCS-S-SCEE-EEESCCCCBCS
T ss_pred cccccCcCCHHHHHHHhccCCC-C-CCCE-EEEEecchhhc
Confidence 89999999999999999 5 5799 99999876543
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.6e-40 Score=370.72 Aligned_cols=334 Identities=18% Similarity=0.250 Sum_probs=251.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccC-CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMV-GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
..+|.++++++.+.+.|...+ ..|+++|+.+|+.++. +++++++||||||||+ ++|++.... ......+..++|
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~--~~~~~~g~~ilv 145 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFD--EMPHLENTQVAC 145 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHH--HCGGGGTCEEEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHh--ccccCCCceEEe
Confidence 357999999999999999988 7899999999998875 5689999999999999 477662221 111112567999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
++|+|+||.|+++.+.... +..++..+|+...... ......+|+|+|||++.+.+... ..+.++++|||||+|
T Consensus 146 l~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHHh---CCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCcc
Confidence 9999999999987665432 3332222222110000 01235899999999999888764 357899999999999
Q ss_pred h-hhcccc-HHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHH
Q 007743 260 R-ILEANF-EEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRF 337 (591)
Q Consensus 260 ~-l~~~~f-~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 337 (591)
. .++.++ ...+..+....+ ..|++++|||++. ..+.. ++...+ ++.+... ...+.+.|...+.....
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~~--~~~iIl~SAT~~~--~~l~~-~~~~~~-vi~v~gr-----~~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRRP--DLKIIIMSATLDA--EKFQR-YFNDAP-LLAVPGR-----TYPVELYYTPEFQRDYL 287 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHCT--TCEEEEEESCSCC--HHHHH-HTTSCC-EEECCCC-----CCCEEEECCSSCCSCHH
T ss_pred ccccchHHHHHHHHHHHHhCC--CceEEEEeccccH--HHHHH-HhcCCC-cccccCc-----ccceEEEEecCCchhHH
Confidence 5 666332 334555555554 6899999999964 44554 344333 3444332 12355556555544333
Q ss_pred ----HHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHH-----------cCCCeEeccCccCHHHHHHHHHHhh-----c
Q 007743 338 ----ILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRY-----------IQVDCFDIHGKQKQQKRTTTFFDFC-----K 397 (591)
Q Consensus 338 ----~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~-----------~~~~~~~lh~~~~~~~R~~~~~~F~-----~ 397 (591)
..+..++.....+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|. +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 3344444455688999999999999999999985 4778999999999999999999999 9
Q ss_pred CCccEEEEeCccccCCCCCCCcEEEEcCC------------------CCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 398 AEKGILLCTDVAARGLDIPAVDWIVQYDP------------------PDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 398 g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
|..+|||||+++++|||+|+|++||++++ |.+.++|+||+|||||. ..|.|++|+++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~--~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS--SSEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC--CCCEEEEEecHHHh
Confidence 99999999999999999999999999888 89999999999999996 57999999998765
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.4e-40 Score=356.09 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=234.3
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcC
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~ 202 (591)
..|+|+|.++++.++.++++++++|||+|||++|++|+...+.. .+.++|||+||++|+.|+++.+.++....+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH------CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC------CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 37999999999999999999999999999999999998877653 234899999999999999999988866666
Q ss_pred CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCc
Q 007743 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282 (591)
Q Consensus 203 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~ 282 (591)
..+..+.|+...... +..+++|+|+||+.|... ....+.++++||+||||++.. ..+..++..++. ..
T Consensus 186 ~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~-~~ 253 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN-CM 253 (510)
T ss_dssp GGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT-CC
T ss_pred cceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc-Cc
Confidence 788888888766543 445689999999977542 124467899999999999875 456777788765 77
Q ss_pred cEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCc----ccccCCceeEEEe---------------------cCchhHH
Q 007743 283 QTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRT----KVTNEGLQQGYCV---------------------VPSAKRF 337 (591)
Q Consensus 283 q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~----~~~~~~l~~~~~~---------------------~~~~~k~ 337 (591)
+++++|||++.....+........+..+.+..... ......+...... .....+.
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 99999999977653322211001132222221100 0000011111111 1112334
Q ss_pred HHHHHHHHhc---CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe-CccccCC
Q 007743 338 ILLYSFLKRN---LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT-DVAARGL 413 (591)
Q Consensus 338 ~~l~~~l~~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT-~~~~~Gi 413 (591)
..+..++... ...++|||++ ...++.+++.|...+..+..+||+|++.+|..+++.|.+|+..||||| +++++|+
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 4455555443 3455666666 888989999999988899999999999999999999999999999999 9999999
Q ss_pred CCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeC
Q 007743 414 DIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455 (591)
Q Consensus 414 Dip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~ 455 (591)
|+|++++||++++|.++..|+||+||+||.| ..|.+++++.
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g-~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRKH-GSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTTT-CCCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhcccccC-CCCceEEEEE
Confidence 9999999999999999999999999999976 4453444443
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.4e-40 Score=350.77 Aligned_cols=294 Identities=20% Similarity=0.212 Sum_probs=223.7
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+++.+.++ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------CSCEEEEESSHHHHHHHHHHGGGG----CG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHhC----CC
Confidence 6999999999999999999999999999999999988754 457999999999999999888773 66
Q ss_pred e-EEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCc
Q 007743 204 T-VGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282 (591)
Q Consensus 204 ~-~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~ 282 (591)
. ++.+.|+... ..+|+|+||+.+...+... ..++++||+||||++.+.+|.. ++..++ ..
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~--~~ 219 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI--AP 219 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC--CS
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC--CC
Confidence 7 8877776643 3799999999998766431 2468999999999999877753 555565 57
Q ss_pred cEEEEeccCch-------------------hHHHHHHhhCCCCCeE--EEecCCCcc----------------------c
Q 007743 283 QTALFSATQTK-------------------KVEDLARLSFQTTPVY--IDVDDGRTK----------------------V 319 (591)
Q Consensus 283 q~ll~SAT~~~-------------------~~~~l~~~~~~~~~~~--i~~~~~~~~----------------------~ 319 (591)
+++++|||+.. ...++...++ ..+.. +.+...... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL-AKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC-CSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC-CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 89999999873 2233321111 11221 111100000 0
Q ss_pred ccCCceeEE---------------------EecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEe
Q 007743 320 TNEGLQQGY---------------------CVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD 378 (591)
Q Consensus 320 ~~~~l~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 378 (591)
....+.+.+ ..+....|...+..++....+.++||||++...++.++..|. +..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 012344567788888888778999999999999999998873 567
Q ss_pred ccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEE--EEeCh
Q 007743 379 IHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNAL--LFLIP 456 (591)
Q Consensus 379 lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i--~~~~~ 456 (591)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|..++.++ .|++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999763213444 44443
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.2e-38 Score=333.21 Aligned_cols=272 Identities=15% Similarity=0.163 Sum_probs=197.6
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
.|++++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+. +..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---
Confidence 47899999999999999999999977654 36789999999999999887765 4456554443221
Q ss_pred HHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHH
Q 007743 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVED 297 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~ 297 (591)
.-..+.-+.++|.+.+...+... ..+.++++|||||||++ +.++...+..+.........|+++||||+++.+..
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~~--~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQG--VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHHT--CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred --cCCCCceEEEEchHHHHHHHhcC--ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 11124567788999887666653 45789999999999997 44444444444444322378999999999986433
Q ss_pred HHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeE
Q 007743 298 LARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF 377 (591)
Q Consensus 298 l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~ 377 (591)
+.. ...|. +.+... .+. .+...++.++... .+++||||+++..++.+++.|...++.+.
T Consensus 141 ~~~---~~~~i-~~~~~~---------------~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 141 FPP---SNSPI-IDEETR---------------IPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp SCC---CSSCC-EEEECC---------------CCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hcC---CCCce-eecccc---------------CCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 221 11121 111110 000 0011122334443 67899999999999999999999999999
Q ss_pred eccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcE-----------------EEEcCCCCChhhhhhhcccc
Q 007743 378 DIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDW-----------------IVQYDPPDEPKEYIHRVGRT 440 (591)
Q Consensus 378 ~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~-----------------VI~~~~P~s~~~y~qr~GR~ 440 (591)
.+||+ +|..+++.|++|+.+|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 577899999999999999999999999999 655 67889999999999999999
Q ss_pred ccCCCCcceEEEEeC
Q 007743 441 ARGEGARGNALLFLI 455 (591)
Q Consensus 441 gR~~~~~g~~i~~~~ 455 (591)
||.|...|.+++|..
T Consensus 275 GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 275 GRNPEKLGDIYAYSG 289 (431)
T ss_dssp SCCTTCCCCEEEECS
T ss_pred CCCCCCCCeEEEEcC
Confidence 997645677777764
No 51
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=315.64 Aligned_cols=208 Identities=26% Similarity=0.429 Sum_probs=183.3
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCC
Q 007743 97 GIMSTTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVG--KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNG 174 (591)
Q Consensus 97 ~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~ 174 (591)
+..+..+|++++|++.++++|..+||..||++|.++||.++.| +|++++||||||||++|++|+++.+... ..+
T Consensus 87 p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~----~~~ 162 (300)
T 3fmo_B 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----NKY 162 (300)
T ss_dssp CCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----SCS
T ss_pred CcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----CCC
Confidence 3445678999999999999999999999999999999999998 9999999999999999999999887542 346
Q ss_pred cEEEEEcCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEE
Q 007743 175 TGVIVICPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCL 253 (591)
Q Consensus 175 ~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~l 253 (591)
+++|||+|||+||.|+++.+..++... +..+...+|+....... ..+++|+|+||++|++++.+...+.+.++++|
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 689999999999999999999998765 57788888877654332 45689999999999999977665778999999
Q ss_pred EEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEec
Q 007743 254 VIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVD 313 (591)
Q Consensus 254 VlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~ 313 (591)
||||||+|++ .+|...+..|+..++. .+|+++||||+++.+..+++.++.+ |..|.+.
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~-~~q~i~~SAT~~~~v~~~a~~~l~~-p~~i~~~ 298 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPR-NCQMLLFSATFEDSVWKFAQKVVPD-PNVIKLK 298 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCT-TCEEEEEESCCCHHHHHHHHHHSSS-CEEEEEC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCC-CCEEEEEeccCCHHHHHHHHHHCCC-CeEEEec
Confidence 9999999998 7999999999999987 8999999999999999999988865 8888764
No 52
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=5.2e-37 Score=299.27 Aligned_cols=212 Identities=33% Similarity=0.525 Sum_probs=193.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccC-CCCCcEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA-PRNGTGVI 178 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~-~~~~~~~l 178 (591)
+..+|++++|++.++++|.++||..|+++|.++||.++.|+|++++||||||||++|++|++..+...... ...++++|
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999998754322 23567899
Q ss_pred EEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 179 VICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 179 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
||+||++||.|+++.+..+....+..+..++||.........+..+++|+|+||++|.+++.... +.+.++++||+|||
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~lViDEa 185 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLVLDEA 185 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS-CCCTTCCEEEETTH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CCcccccEEEEeCH
Confidence 99999999999999999999999999999999999888888888899999999999999997765 67889999999999
Q ss_pred hhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC
Q 007743 259 DRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314 (591)
Q Consensus 259 h~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~ 314 (591)
|++++++|...+..++..++. ..|+++||||+++.+..+++.++. +|..|.+..
T Consensus 186 h~l~~~~~~~~~~~i~~~~~~-~~q~~~~SAT~~~~~~~~~~~~l~-~~~~i~~~~ 239 (242)
T 3fe2_A 186 DRMLDMGFEPQIRKIVDQIRP-DRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGA 239 (242)
T ss_dssp HHHHHTTCHHHHHHHHTTSCS-SCEEEEEESCCCHHHHHHHHHHCS-SCEEEEECC
T ss_pred HHHhhhCcHHHHHHHHHhCCc-cceEEEEEeecCHHHHHHHHHHCC-CCEEEEecC
Confidence 999999999999999999987 899999999999999999998886 488888764
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2e-37 Score=340.03 Aligned_cols=307 Identities=18% Similarity=0.134 Sum_probs=220.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH
Q 007743 110 SQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ 189 (591)
Q Consensus 110 ~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q 189 (591)
....++++.++.+ |.|.......+.|++++++||||||||+ ++++.+... ..++|++|||+||.|
T Consensus 130 ~~d~l~~i~dl~~----p~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-------~~gl~l~PtR~LA~Q 194 (677)
T 3rc3_A 130 CKDDLRKISDLRI----PPNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-------KSGVYCGPLKLLAHE 194 (677)
T ss_dssp CHHHHHHHTBCCC----GGGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-------SSEEEEESSHHHHHH
T ss_pred CHHHHHHHhhccC----hhhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-------CCeEEEeCHHHHHHH
Confidence 3444455544443 2333344456789999999999999998 455555542 235899999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHH
Q 007743 190 THAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEE 269 (591)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~ 269 (591)
+++.+... +..++.++|+...... .-....+++++|++.+. ....+++|||||||++++.+|...
T Consensus 195 i~~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~ 259 (677)
T 3rc3_A 195 IFEKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWA 259 (677)
T ss_dssp HHHHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHH
T ss_pred HHHHHHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHH
Confidence 99998764 6788888887654110 00012466666665431 246789999999999999999999
Q ss_pred HHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCC
Q 007743 270 MRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLS 349 (591)
Q Consensus 270 ~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~ 349 (591)
+..++..++....+++++|||. +.+..+..... ....+...... ..+. +. .... ..+.. ..
T Consensus 260 ~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~~--~~~~v~~~~r~-----~~l~--~~-~~~l-------~~l~~-~~ 320 (677)
T 3rc3_A 260 WTRALLGLCAEEVHLCGEPAAI-DLVMELMYTTG--EEVEVRDYKRL-----TPIS--VL-DHAL-------ESLDN-LR 320 (677)
T ss_dssp HHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHHT--CCEEEEECCCS-----SCEE--EC-SSCC-------CSGGG-CC
T ss_pred HHHHHHccCccceEEEeccchH-HHHHHHHHhcC--CceEEEEeeec-----chHH--HH-HHHH-------HHHHh-cC
Confidence 9999999985588999999995 34555554331 22222211100 0000 00 0000 01111 14
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhc--CCccEEEEeCccccCCCCCCCcEEEEcCC-
Q 007743 350 KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK--AEKGILLCTDVAARGLDIPAVDWIVQYDP- 426 (591)
Q Consensus 350 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~--g~~~vLvaT~~~~~GiDip~v~~VI~~~~- 426 (591)
.+.||||++++.++.++..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ +|++||++++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 556899999999999999999999999999999999999999999999 889999999999999999 9999999999
Q ss_pred -------------CCChhhhhhhccccccCCCC--cceEEEEeChhhHHHHHHHHH
Q 007743 427 -------------PDEPKEYIHRVGRTARGEGA--RGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 427 -------------P~s~~~y~qr~GR~gR~~~~--~g~~i~~~~~~e~~~~~~l~~ 467 (591)
|.+.++|+||+|||||.|.. .|.|++++ +++...++.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~-~~d~~~~~~~~~ 454 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN-HEDLSLLKEILK 454 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS-TTHHHHHHHHHH
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe-cchHHHHHHHHh
Confidence 88999999999999997632 46666554 455556655544
No 54
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=303.04 Aligned_cols=210 Identities=61% Similarity=1.018 Sum_probs=188.5
Q ss_pred cccccccCC--CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEE
Q 007743 100 STTSFDSLG--LSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGV 177 (591)
Q Consensus 100 ~~~~f~~l~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 177 (591)
...+|++++ +++.++++|..+||..|+++|.++++.++.|+|++++||||||||++|++|+++.+.........+.++
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 345688887 999999999999999999999999999999999999999999999999999999988754444457789
Q ss_pred EEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeC
Q 007743 178 IVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDE 257 (591)
Q Consensus 178 lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDE 257 (591)
|||+||++||.|+++.+.+++...+..+..++|+.........+..+++|+|+||++|.+++.....+.+.++++|||||
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 99999999999999999999998899999999999888888888888999999999999999877657789999999999
Q ss_pred chhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEE
Q 007743 258 ADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYI 310 (591)
Q Consensus 258 ah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i 310 (591)
||++++++|...+..|+..++. .+|+++||||+++.+..+++..+..++.++
T Consensus 210 ah~l~~~~~~~~l~~i~~~~~~-~~q~l~~SAT~~~~v~~~~~~~l~~~~~~v 261 (262)
T 3ly5_A 210 ADRILDVGFEEELKQIIKLLPT-RRQTMLFSATQTRKVEDLARISLKKEPLYV 261 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCS-SSEEEEECSSCCHHHHHHHHHHCSSCCEEC
T ss_pred hHHHhhhhHHHHHHHHHHhCCC-CCeEEEEEecCCHHHHHHHHHHcCCCCeee
Confidence 9999999999999999999987 789999999999999999999888766654
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=292.85 Aligned_cols=205 Identities=41% Similarity=0.649 Sum_probs=188.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.+|++++|++.+.++|..+||..|+++|.++++.++.|+|++++||||||||++|++|+++.+... ..+.++||++
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~----~~~~~~lil~ 118 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET----PQRLFALVLT 118 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CCSSCEEEEC
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC----CCCceEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999988764 2356799999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh
Q 007743 182 PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI 261 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l 261 (591)
||++|+.|+++.+.++....+..+..++||.........+..+++|+|+||++|.+++.....+.+.++++||+||||++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 99999999999999999888999999999988877777788899999999999999998755567889999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEe
Q 007743 262 LEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDV 312 (591)
Q Consensus 262 ~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~ 312 (591)
++.+|...+..++..++. ..|+++||||+++.+..+++.++.+ |..+.+
T Consensus 199 ~~~~~~~~l~~i~~~~~~-~~~~l~~SAT~~~~v~~~~~~~l~~-p~~i~v 247 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPR-DRKTFLFSATMTKKVQKLQRAALKN-PVKCAV 247 (249)
T ss_dssp HHTTCHHHHHHHHHSSCS-SSEEEEEESSCCHHHHHHHHHHCSS-CEEEEC
T ss_pred hccChHHHHHHHHHhCCC-CCeEEEEeccCCHHHHHHHHHHCCC-CEEEEe
Confidence 999999999999999987 8999999999999999999988765 777765
No 56
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.4e-36 Score=290.06 Aligned_cols=212 Identities=50% Similarity=0.798 Sum_probs=187.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
...+|+++++++.+++.|..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+.........+.++||
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999998765443345778999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCch
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEAD 259 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah 259 (591)
++||++|+.|+++.+..+....+..+..++|+.....+...+ .+++|+|+||++|.+++.....+.+.++++||+||||
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 999999999999999999888888999999998877665544 5799999999999999877654677899999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC
Q 007743 260 RILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314 (591)
Q Consensus 260 ~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~ 314 (591)
++++++|...+..++..++. .+|+++||||+++.+..+++.++.+ |.++.+..
T Consensus 182 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~~~~-p~~i~~~~ 234 (236)
T 2pl3_A 182 RILDMGFADTMNAVIENLPK-KRQTLLFSATQTKSVKDLARLSLKN-PEYVWVHE 234 (236)
T ss_dssp HHHHTTTHHHHHHHHHTSCT-TSEEEEEESSCCHHHHHHHHHSCSS-CEEEECCC
T ss_pred HHhcCCcHHHHHHHHHhCCC-CCeEEEEEeeCCHHHHHHHHHhCCC-CEEEEeCC
Confidence 99999999999999999987 8999999999999999999987764 88877653
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.7e-36 Score=288.80 Aligned_cols=209 Identities=35% Similarity=0.553 Sum_probs=178.3
Q ss_pred Cccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccC--CCCCc
Q 007743 99 MSTTSFDS-LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA--PRNGT 175 (591)
Q Consensus 99 ~~~~~f~~-l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~--~~~~~ 175 (591)
.+..+|.+ +++++.++++|.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+...... ...+.
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 34567888 7999999999999999999999999999999999999999999999999999999887643221 12567
Q ss_pred EEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEE
Q 007743 176 GVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVI 255 (591)
Q Consensus 176 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVl 255 (591)
++||++||++||.|+++.+..+. ..+..+..++||.........+.++++|+|+||++|.+++.... +.+.++++||+
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~lVi 173 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS-VNLRSITYLVI 173 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC-CCCTTCCEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cCcccceEEEE
Confidence 89999999999999999999875 45778889999988888888888899999999999999887755 67889999999
Q ss_pred eCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEE
Q 007743 256 DEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYID 311 (591)
Q Consensus 256 DEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~ 311 (591)
||||++++.+|...+..++..++. ..|+++||||+++.+..++..++.+ |.++.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~l~~-p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRP-DRQTVMTSATWPDTVRQLALSYLKD-PMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCS-SCEEEEEESCCCHHHHHHHHTTCSS-CEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCc-CCeEEEEEeeCCHHHHHHHHHHCCC-CEEEe
Confidence 999999999999999999999987 8999999999999999999987764 77664
No 58
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=9.3e-36 Score=292.51 Aligned_cols=213 Identities=33% Similarity=0.502 Sum_probs=188.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccC-----CCCC
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFA-----PRNG 174 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~-----~~~~ 174 (591)
...+|++++|++.++++|..+||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+...... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999998754311 2235
Q ss_pred cEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEE
Q 007743 175 TGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLV 254 (591)
Q Consensus 175 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lV 254 (591)
+++|||+||++||.|+++.+..+....+..+..++||.....+...+..+++|+|+||++|.+++.... +.+.++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS-BCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-CChhhCCEEE
Confidence 689999999999999999999998888889999999998888888888889999999999999998765 6688999999
Q ss_pred EeCchhhhccccHHHHHHHHHhCCC---CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC
Q 007743 255 IDEADRILEANFEEEMRQIMKLLPK---KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314 (591)
Q Consensus 255 lDEah~l~~~~f~~~~~~i~~~l~~---~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~ 314 (591)
+||||++++.+|...+..++..+.. ...|+++||||+++.+..+++.++. +|..+.+..
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~ 241 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY-NYIFMTVGR 241 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS-SCEEEEEC-
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC-CCEEEEECC
Confidence 9999999999999999999985432 2579999999999999999998876 488887765
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-36 Score=331.52 Aligned_cols=304 Identities=17% Similarity=0.183 Sum_probs=189.6
Q ss_pred CCcHHHHHhhccccC----C-CcEEEEccCCCCchHHhHHHHHHHHHhcccC---CCCCcEEEEEcCChHHHHHHH-HHH
Q 007743 124 FMTQIQARAVPPLMV----G-KDVLGAARTGSGKTLAFLIPAVELLYNAQFA---PRNGTGVIVICPTRELAIQTH-AVA 194 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~----g-~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~---~~~~~~~lil~PtreLa~q~~-~~~ 194 (591)
.|+++|.++++.++. | ++++++++||||||++++. ++..++...+. ...+.++|||+||++|+.|++ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999875 4 6699999999999999654 55555543211 114678999999999999988 666
Q ss_pred HHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCC---CCccCCceEEEEeCchhhhccccHHHHH
Q 007743 195 KDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTK---GFIYKNLKCLVIDEADRILEANFEEEMR 271 (591)
Q Consensus 195 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~---~~~~~~l~~lVlDEah~l~~~~f~~~~~ 271 (591)
..+ +..+..+.++. ...+.+|+|+||++|...+.... .+....+++||+||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 544 33444443322 23457999999999988764221 2445678999999999997643 24667
Q ss_pred HHHHhCCCCCccEEEEeccCchhHHH-H----------------HHhhCCCCCeEEEecCCCcc--cc---------cCC
Q 007743 272 QIMKLLPKKDRQTALFSATQTKKVED-L----------------ARLSFQTTPVYIDVDDGRTK--VT---------NEG 323 (591)
Q Consensus 272 ~i~~~l~~~~~q~ll~SAT~~~~~~~-l----------------~~~~~~~~~~~i~~~~~~~~--~~---------~~~ 323 (591)
.++..++ ..++++||||+...... + ....+..++.++.+...... .. ...
T Consensus 324 ~il~~~~--~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 324 EILEYFE--PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHST--TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHhCC--cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 7888887 46899999997743321 1 11112222222222111000 00 000
Q ss_pred cee-EEEecC------chhHHHH----HHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHcCCC--------eEeccCcc
Q 007743 324 LQQ-GYCVVP------SAKRFIL----LYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYIQVD--------CFDIHGKQ 383 (591)
Q Consensus 324 l~~-~~~~~~------~~~k~~~----l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~--------~~~lh~~~ 383 (591)
+.. .+.... ...+... +..++.. ...+++||||+++..++.++..|...+.. +..+||.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 000 000000 0111222 3333333 34579999999999999999999876432 77899998
Q ss_pred CHHHHHHHHHHhhcCCcc---EEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCC
Q 007743 384 KQQKRTTTFFDFCKAEKG---ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGE 444 (591)
Q Consensus 384 ~~~~R~~~~~~F~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~ 444 (591)
+. +|..+++.|++|+.. |||||+++++|||+|++++||++++|.++..|+||+||+||.+
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccC
Confidence 74 799999999998766 8999999999999999999999999999999999999999975
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.4e-35 Score=279.15 Aligned_cols=202 Identities=32% Similarity=0.532 Sum_probs=182.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC 181 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~ 181 (591)
.+|++++|++.++++|.++||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... ..+.++||++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----~~~~~~lil~ 78 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK----KDNIQAMVIV 78 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT----SCSCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc----CCCeeEEEEe
Confidence 469999999999999999999999999999999999999999999999999999999999876432 3457899999
Q ss_pred CChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 182 PTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 182 PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
||++|+.|+++.+..+.... +..+..+.|+.........+..+++|+|+||++|.+.+.... ..+.++++||+||||+
T Consensus 79 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 79 PTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV-AKVDHVQMIVLDEADK 157 (206)
T ss_dssp SCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEETHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC-cCcccCCEEEEEChHH
Confidence 99999999999999998776 778888999988877777777889999999999999887654 5678999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEE
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYI 310 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i 310 (591)
+.+.+|...+..++..+++ ..|+++||||+++.+..+++.++.+ |..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~l~~-p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPK-NRQILLYSATFPLSVQKFMNSHLEK-PYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCT-TCEEEEEESCCCHHHHHHHHHHCSS-CEEE
T ss_pred hHhhCcHHHHHHHHHhCCc-cceEEEEEeeCCHHHHHHHHHHcCC-CeEe
Confidence 9999999999999999987 7899999999999999999988764 6544
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.5e-35 Score=288.05 Aligned_cols=207 Identities=33% Similarity=0.496 Sum_probs=174.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
...+|++++|++.++++|..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... ..+.++||
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----~~~~~~li 103 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----FKETQALV 103 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT----SCSCCEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----CCCceEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999886432 24568999
Q ss_pred EcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcC-CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 180 ICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKG-VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
++||++|+.|+++.+..++...+..+..++||.....+...+..+ ++|+|+||++|.+++.... +.+.++++||+|||
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~lViDEa 182 (237)
T 3bor_A 104 LAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY-LSPKWIKMFVLDEA 182 (237)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS-SCSTTCCEEEEESH
T ss_pred EECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC-cCcccCcEEEECCc
Confidence 999999999999999999888888899999998877776666655 8999999999999987754 56788999999999
Q ss_pred hhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEec
Q 007743 259 DRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVD 313 (591)
Q Consensus 259 h~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~ 313 (591)
|++++.+|...+..++..++. ..|+++||||+++.+..+++.++. +|..|.+.
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~l~-~p~~i~v~ 235 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNT-SIQVVLLSATMPTDVLEVTKKFMR-DPIRILVK 235 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCT-TCEEEEECSSCCHHHHHHHHHHCS-SCEEEC--
T ss_pred hHhhccCcHHHHHHHHHhCCC-CCeEEEEEEecCHHHHHHHHHHCC-CCEEEEec
Confidence 999999999999999999986 899999999999999999998876 48777654
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=9.4e-36 Score=285.87 Aligned_cols=207 Identities=29% Similarity=0.496 Sum_probs=182.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..+.++||+
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil 78 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE----RAEVQAVIT 78 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT----SCSCCEEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC----cCCceEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999886532 246789999
Q ss_pred cCChHHHHHHHHHHHHHHhhc----CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEe
Q 007743 181 CPTRELAIQTHAVAKDLLKYH----SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVID 256 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlD 256 (591)
+||++|+.|+++.+.++.... +..+..++||.........+..+++|+|+||++|.+++.... +.+.++++||+|
T Consensus 79 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~lViD 157 (219)
T 1q0u_A 79 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA-LDVHTAHILVVD 157 (219)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC-CCGGGCCEEEEC
T ss_pred cCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC-CCcCcceEEEEc
Confidence 999999999999999998776 678888899887665544455678999999999999887754 667889999999
Q ss_pred CchhhhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC
Q 007743 257 EADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314 (591)
Q Consensus 257 Eah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~ 314 (591)
|||++.+.+|...+..++..++. ..|+++||||++..+.++++.++.+ |..+.+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~~~~-p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPK-DLQMLVFSATIPEKLKPFLKKYMEN-PTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCT-TCEEEEEESCCCGGGHHHHHHHCSS-CEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCc-ccEEEEEecCCCHHHHHHHHHHcCC-CeEEEeec
Confidence 99999999999999999999986 7899999999999999999987765 87776654
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.8e-35 Score=282.52 Aligned_cols=205 Identities=26% Similarity=0.446 Sum_probs=179.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEE
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIV 179 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~li 179 (591)
...+|++++|++.+.+.|.++||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... ..+.++||
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~li 97 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----NLSTQILI 97 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----SCSCCEEE
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----CCCceEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999887542 24678999
Q ss_pred EcCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 180 ICPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 180 l~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
++||++|+.|+++.+..+.... +..+..+.||......... ..+++|+|+||++|.+++.... +.+.++++||+|||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~~~lViDEa 175 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR-LKKCHIAVGSPGRIKQLIELDY-LNPGSIRLFILDEA 175 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH-TTSCSEEEECHHHHHHHHHTTS-SCGGGCCEEEESSH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh-ccCCCEEEECHHHHHHHHhcCC-cccccCCEEEeCCc
Confidence 9999999999999999987665 7888888888876655444 3579999999999999887654 66789999999999
Q ss_pred hhhhccc-cHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEe
Q 007743 259 DRILEAN-FEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDV 312 (591)
Q Consensus 259 h~l~~~~-f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~ 312 (591)
|++++.+ |...+..++..++. ..|+++||||+++.+..+...++. +|.++.+
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~-~~~~l~lSAT~~~~~~~~~~~~~~-~p~~i~~ 228 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPA-SKQMLAVSATYPEFLANALTKYMR-DPTFVRL 228 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCS-SCEEEEEESCCCHHHHHHHTTTCS-SCEEECC
T ss_pred hHhhcCcchHHHHHHHHHhCCC-CCeEEEEEeccCHHHHHHHHHHcC-CCeEEEc
Confidence 9999987 99999999999987 789999999999999988887665 4777654
No 64
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.2e-32 Score=293.38 Aligned_cols=320 Identities=17% Similarity=0.182 Sum_probs=240.0
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
+|+ .|+++|.-..-.+..|+ |+.+.||+|||+++.+|++-..+ .|..+.||+|++.||.|-++++..+..
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-------~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-------IGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-------TSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-------cCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 565 58999999988888888 99999999999999999974432 467799999999999999999999999
Q ss_pred hcCCeEEEEEcCc-------------------------------------------------cchHHHHHHhcCCCEEEe
Q 007743 200 YHSQTVGLVIGGS-------------------------------------------------ARRGEAERIVKGVNLLVA 230 (591)
Q Consensus 200 ~~~~~~~~~~gg~-------------------------------------------------~~~~~~~~l~~~~~Iiv~ 230 (591)
++++.+++++... ....+.+. .=.|||+++
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~-aY~~DItYg 220 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE-AYLCDVTYG 220 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH-HHHSSEEEE
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH-HhcCCCEEc
Confidence 9999999998721 00111111 113899999
Q ss_pred CchHH-HHHHhcCC-----CCccCCceEEEEeCchhhh-cc--------c-------cHHHHHHHHHhCC----------
Q 007743 231 TPGRL-LDHLQNTK-----GFIYKNLKCLVIDEADRIL-EA--------N-------FEEEMRQIMKLLP---------- 278 (591)
Q Consensus 231 Tp~~L-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~~--------~-------f~~~~~~i~~~l~---------- 278 (591)
|..-| +++|+.+- ....+.+.+.|+||+|.++ |. | +...+..+...+.
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99876 56665432 2235678999999999754 21 0 0011111111000
Q ss_pred ----------------------------------------------C---------------------------------
Q 007743 279 ----------------------------------------------K--------------------------------- 279 (591)
Q Consensus 279 ----------------------------------------------~--------------------------------- 279 (591)
+
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 0
Q ss_pred ---------------------------CCccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCcee-EEEec
Q 007743 280 ---------------------------KDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQ-GYCVV 331 (591)
Q Consensus 280 ---------------------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~~~ 331 (591)
....+.+||+|+......+...+- ..++.+..... .....+ ..+..
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~---l~vv~IPtnkp---~~R~d~~d~vy~ 454 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG---MEVVVIPTHKP---MIRKDHDDLVFR 454 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC---CCEEECCCSSC---CCCEECCCEEES
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC---CeEEEECCCCC---cceeecCcEEEe
Confidence 024688899999988888877553 22444433221 122222 34556
Q ss_pred CchhHHHHHHHHHHhc--CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc
Q 007743 332 PSAKRFILLYSFLKRN--LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA 409 (591)
Q Consensus 332 ~~~~k~~~l~~~l~~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 409 (591)
....|...+...+... .+.++||||+|+..++.++..|...|+++..+||+..+.++..+...|+.| .|+||||++
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 7778888888888753 478999999999999999999999999999999997666666666666655 699999999
Q ss_pred ccCCCCC--------CCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhH
Q 007743 410 ARGLDIP--------AVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEEL 459 (591)
Q Consensus 410 ~~GiDip--------~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~ 459 (591)
+||+||+ ++.+||+|++|.+...|+||+|||||+| .+|.+++|++.+|.
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG-~~G~a~~fvsleD~ 589 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQG-DPGESIFFLSLEDD 589 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSS-CCCEEEEEEETTSH
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCC-CCeeEEEEechhHH
Confidence 9999998 6679999999999999999999999975 78999999998874
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.2e-34 Score=272.58 Aligned_cols=204 Identities=37% Similarity=0.541 Sum_probs=181.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 103 SFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 103 ~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
+|++++|++.+++.|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+..... ...+.++||++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-RGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-TTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCcEEEEEC
Confidence 6999999999999999999999999999999999999999999999999999999999988754211 134678999999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 183 TRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 183 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
|++|+.|+++.+..+... ..+..++|+.........+..+++|+|+||+++.+++.... +.+.++++||+||||++.
T Consensus 81 ~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 81 TRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS-SCCTTCSEEEEESHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC-cchhhceEEEEEChhHhh
Confidence 999999999999988654 67888899988877777778889999999999999987754 668899999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEe
Q 007743 263 EANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDV 312 (591)
Q Consensus 263 ~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~ 312 (591)
+.+|...+..++..++. ..|++++|||+++.+..+++.++.+ |..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPP-SRQTLLFSATLPSWAKRLAERYMKN-PVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCT-TSEEEEECSSCCHHHHHHHHHHCSS-CEEEEC
T ss_pred ccchHHHHHHHHHhCCc-cCeEEEEEEecCHHHHHHHHHHcCC-CeEEEc
Confidence 99999999999999887 8899999999999999999987764 777764
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.3e-34 Score=277.18 Aligned_cols=206 Identities=33% Similarity=0.543 Sum_probs=175.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.+++.|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..+.++||+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~----~~~~~~lil 88 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKAPQALML 88 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----CCSCCEEEE
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc----CCCceEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999887432 346789999
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 181 CPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
+||++|+.|+++.+..+....+..+..+.|+.........+. .++|+|+||++|.+++.... +.+.++++||+||||+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADE 166 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHHH
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCC-cchhhCcEEEEcChhH
Confidence 999999999999999998888889999999887666554443 48999999999999988754 6688999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC
Q 007743 261 ILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314 (591)
Q Consensus 261 l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~ 314 (591)
+.+.+|...+..++..++. ..|++++|||+++.+..+++.++.+ |..+.+..
T Consensus 167 ~~~~~~~~~l~~i~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~-p~~i~~~~ 218 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPP-TTQVVLLSATMPNDVLEVTTKFMRN-PVRILVKK 218 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCT-TCEEEEEESSCCHHHHHHHHHHCSS-CEEEC---
T ss_pred HhhhhhHHHHHHHHHhCCc-cCeEEEEEeecCHHHHHHHHHHCCC-CEEEEecC
Confidence 9999999999999999987 8999999999999999999987764 77776654
No 67
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.4e-34 Score=330.92 Aligned_cols=323 Identities=17% Similarity=0.163 Sum_probs=221.5
Q ss_pred CCCcHHHHHhhccccC--CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhh
Q 007743 123 QFMTQIQARAVPPLMV--GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY 200 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~ 200 (591)
..|+|+|.+++..++. +.+++++++||+|||++++..+...+... ...++|||||+ .|+.|+...+.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-----~~~rvLIVvP~-sLl~Qw~~E~~~~f-- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-----AAERVLIIVPE-TLQHQWLVEMLRRF-- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-----SCCCEEEECCT-TTHHHHHHHHHHHS--
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEeCH-HHHHHHHHHHHHHh--
Confidence 3689999999998886 45899999999999999987776655432 23469999999 99999888876543
Q ss_pred cCCeEEEEEcCccchHHHH--HHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccH-HHHHHHHHhC
Q 007743 201 HSQTVGLVIGGSARRGEAE--RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFE-EEMRQIMKLL 277 (591)
Q Consensus 201 ~~~~~~~~~gg~~~~~~~~--~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~-~~~~~i~~~l 277 (591)
+..+..+.|+........ ......+|+|+|++.+.........+...++++||+||||++...+.. .....++..+
T Consensus 224 -~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 224 -NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp -CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred -CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 555555544322111000 112346999999998864322211133457899999999999753321 1112222222
Q ss_pred CCCCccEEEEeccCch-h---HHHHHHh----------------------------hCCCC-------------------
Q 007743 278 PKKDRQTALFSATQTK-K---VEDLARL----------------------------SFQTT------------------- 306 (591)
Q Consensus 278 ~~~~~q~ll~SAT~~~-~---~~~l~~~----------------------------~~~~~------------------- 306 (591)
.....+++++|||+.. . +..+... .....
T Consensus 303 ~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 303 AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhh
Confidence 2225679999999743 1 1111110 00000
Q ss_pred --------------------------------CeEEEecCCCcc-cccCCceeEE-------------------------
Q 007743 307 --------------------------------PVYIDVDDGRTK-VTNEGLQQGY------------------------- 328 (591)
Q Consensus 307 --------------------------------~~~i~~~~~~~~-~~~~~l~~~~------------------------- 328 (591)
...+........ .....+....
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 000000000000 0000000000
Q ss_pred --------------------EecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHH-cCCCeEeccCccCHHH
Q 007743 329 --------------------CVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRY-IQVDCFDIHGKQKQQK 387 (591)
Q Consensus 329 --------------------~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~ 387 (591)
..+....|...|..++....+.++||||+++..++.++..|.. .|+.+..+||+|++.+
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIE 542 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTH
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 1223345788899999887889999999999999999999994 6999999999999999
Q ss_pred HHHHHHHhhcCC--ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeC
Q 007743 388 RTTTFFDFCKAE--KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLI 455 (591)
Q Consensus 388 R~~~~~~F~~g~--~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~ 455 (591)
|..+++.|++|+ ..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| ..|.++++..
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~G-q~~~v~v~~~ 611 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG-QAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSS-SCSCCEEEEE
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCC-CCceEEEEEe
Confidence 999999999998 999999999999999999999999999999999999999999976 5576655543
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.1e-34 Score=272.59 Aligned_cols=204 Identities=31% Similarity=0.558 Sum_probs=178.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEE
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVI 180 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil 180 (591)
..+|++++|++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..+.++||+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~----~~~~~~lil 88 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSVLVM 88 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC----TTCCCEEEE
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc----CCCEEEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999876431 234689999
Q ss_pred cCChHHHHHHHHHHHHHHhhc-CCeEEEEEcCccchHHHHHHhc-CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCc
Q 007743 181 CPTRELAIQTHAVAKDLLKYH-SQTVGLVIGGSARRGEAERIVK-GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEA 258 (591)
Q Consensus 181 ~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEa 258 (591)
+||++|+.|+++.++++.... +..+..+.|+.........+.. .++|+|+||++|..++.... +.+.++++||+|||
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEa 167 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILDEC 167 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEESH
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC-CCcccCCEEEEcCH
Confidence 999999999999999998776 7889999998887766666654 47999999999999887754 66889999999999
Q ss_pred hhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEE
Q 007743 259 DRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYID 311 (591)
Q Consensus 259 h~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~ 311 (591)
|++++ .+|...+..++..++. ..|++++|||+++.+..+++.++.+ |..+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~-p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPH-EKQVMMFSATLSKEIRPVCRKFMQD-PMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCS-SSEEEEEESCCCTTTHHHHHTTCSS-CEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCC-cCeEEEEEeecCHHHHHHHHHHcCC-CeEEe
Confidence 99987 6888999999998886 8999999999999999999987754 76654
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=279.73 Aligned_cols=211 Identities=29% Similarity=0.488 Sum_probs=179.1
Q ss_pred cccccccC----CCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCc
Q 007743 100 STTSFDSL----GLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGT 175 (591)
Q Consensus 100 ~~~~f~~l----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~ 175 (591)
+..+|+++ ++++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+... ...+.
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---~~~~~ 99 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP---ANKGF 99 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC---CSSSC
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc---ccCCc
Confidence 34567776 899999999999999999999999999999999999999999999999999999887542 23467
Q ss_pred EEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHH-HHHhcCCCEEEeCchHHHHHHhcCC-CCccCCceEE
Q 007743 176 GVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEA-ERIVKGVNLLVATPGRLLDHLQNTK-GFIYKNLKCL 253 (591)
Q Consensus 176 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~Iiv~Tp~~L~~~l~~~~-~~~~~~l~~l 253 (591)
++||++||++||.|+++.+.++....+..+..+.|+....... .....+++|+|+||++|.+++.... .+.+.++++|
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~l 179 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWL 179 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEE
Confidence 8999999999999999999999888888888777665333221 1123568999999999999998764 3568899999
Q ss_pred EEeCchhhhc---cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCeEEEecC
Q 007743 254 VIDEADRILE---ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDD 314 (591)
Q Consensus 254 VlDEah~l~~---~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~ 314 (591)
|+||||++++ .+|...+..++..+.....|+++||||+++.+..+++.++. +|..+.+..
T Consensus 180 ViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~-~p~~i~~~~ 242 (245)
T 3dkp_A 180 VVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD-NVISVSIGA 242 (245)
T ss_dssp EESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS-SCEEEEECC
T ss_pred EEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC-CCEEEEeCC
Confidence 9999999998 57889999998887666889999999999999999998886 488887765
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.4e-32 Score=292.54 Aligned_cols=311 Identities=15% Similarity=0.197 Sum_probs=212.6
Q ss_pred CCcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.|+|+|.++++.+. .++++|++++||+|||++++..+ ..+... ....++|||+|+ .|+.|+.+.+.++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~----~~~~~~LIv~P~-~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKE----NELTPSLVICPL-SVLKNWEEELSKFAP 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHT----TCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhc----CCCCCEEEEccH-HHHHHHHHHHHHHCC
Confidence 69999999998773 67899999999999999975544 444322 234579999995 688999999988754
Q ss_pred hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCC
Q 007743 200 YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPK 279 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~ 279 (591)
+..+..+.|+... ......+|+|+||+++..... +....+++||+||||++.+.+. .....+..++
T Consensus 111 --~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~- 176 (500)
T 1z63_A 111 --HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK- 176 (500)
T ss_dssp --TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-
T ss_pred --CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-
Confidence 3456666555432 112457999999999865433 2334689999999999976442 3445555565
Q ss_pred CCccEEEEeccCchh-HHHHHH---h---------------------------------hCCCCCeEEEecCCCc---cc
Q 007743 280 KDRQTALFSATQTKK-VEDLAR---L---------------------------------SFQTTPVYIDVDDGRT---KV 319 (591)
Q Consensus 280 ~~~q~ll~SAT~~~~-~~~l~~---~---------------------------------~~~~~~~~i~~~~~~~---~~ 319 (591)
..+.+++|||+... ..++.. . .+ .|..+....... ..
T Consensus 177 -~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l--~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 177 -SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII--SPFILRRTKYDKAIIND 253 (500)
T ss_dssp -EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH--TTTEECCCTTCHHHHTT
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH--hhHeeeecccccchhhc
Confidence 46789999997432 222111 0 00 111111100000 00
Q ss_pred ccCCceeE-EEe-------------------------------------------------------cCchhHHHHHHHH
Q 007743 320 TNEGLQQG-YCV-------------------------------------------------------VPSAKRFILLYSF 343 (591)
Q Consensus 320 ~~~~l~~~-~~~-------------------------------------------------------~~~~~k~~~l~~~ 343 (591)
.+...... ++. .....|+..+..+
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 00000000 000 1112355555666
Q ss_pred HHhc--CCCcEEEEecChhhHHHHHHHHHHc-CCCeEeccCccCHHHHHHHHHHhhcC-Ccc-EEEEeCccccCCCCCCC
Q 007743 344 LKRN--LSKKVMVFFSSCNSVKFHSELLRYI-QVDCFDIHGKQKQQKRTTTFFDFCKA-EKG-ILLCTDVAARGLDIPAV 418 (591)
Q Consensus 344 l~~~--~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~R~~~~~~F~~g-~~~-vLvaT~~~~~GiDip~v 418 (591)
+... .+.++||||++...++.+...|... ++.+..+||++++.+|..+++.|++| ... +|+||+++++|+|+|++
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 6543 5779999999999999999999885 99999999999999999999999998 454 89999999999999999
Q ss_pred cEEEEcCCCCChhhhhhhccccccCCCCc-ceEEEEeChh
Q 007743 419 DWIVQYDPPDEPKEYIHRVGRTARGEGAR-GNALLFLIPE 457 (591)
Q Consensus 419 ~~VI~~~~P~s~~~y~qr~GR~gR~~~~~-g~~i~~~~~~ 457 (591)
++||+||+|+++..|.||+||++|.|..+ ..++.|++..
T Consensus 414 ~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 414 NRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp SEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999987432 2234455543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=2.5e-31 Score=303.35 Aligned_cols=314 Identities=17% Similarity=0.128 Sum_probs=215.0
Q ss_pred CCcHHHHHhhccccC--------------CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH
Q 007743 124 FMTQIQARAVPPLMV--------------GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ 189 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~--------------g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q 189 (591)
.|+|+|..|++.++. ++++++.++||||||+++ ++++..+... ....++|||+|+++|+.|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----~~~~rvLvlvpr~eL~~Q 345 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----DFIDKVFFVVDRKDLDYQ 345 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----TTCCEEEEEECGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----CCCceEEEEeCcHHHHHH
Confidence 599999999999875 368999999999999997 6666544321 234689999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCC-ccCCceEEEEeCchhhhccccH
Q 007743 190 THAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGF-IYKNLKCLVIDEADRILEANFE 267 (591)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~-~~~~l~~lVlDEah~l~~~~f~ 267 (591)
+.+.+..+... .+.++.+.......+. .+.+|+|+||++|..++.....+ .+..+.+||+||||++.. .
T Consensus 346 ~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~ 416 (1038)
T 2w00_A 346 TMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---G 416 (1038)
T ss_dssp HHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---H
T ss_pred HHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---h
Confidence 99988876532 1234445554444553 46899999999999887653212 356788999999999864 3
Q ss_pred HHHHHHHHhCCCCCccEEEEeccCchhH--------H-------------HHHHhhCCCCCeEEEecCCCccc-------
Q 007743 268 EEMRQIMKLLPKKDRQTALFSATQTKKV--------E-------------DLARLSFQTTPVYIDVDDGRTKV------- 319 (591)
Q Consensus 268 ~~~~~i~~~l~~~~~q~ll~SAT~~~~~--------~-------------~l~~~~~~~~~~~i~~~~~~~~~------- 319 (591)
..+..|...+| ..++++||||+.... . +.+...+.. |..+.........
T Consensus 417 ~~~~~I~~~~p--~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 417 EAQKNLKKKFK--RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp HHHHHHHHHCS--SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCC
T ss_pred HHHHHHHHhCC--cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhccccc
Confidence 34567777887 479999999987432 1 112222222 2222111100000
Q ss_pred ---ccCCceeEEEecCchhHHHHHHH-HHHh---c--------CCCcEEEEecChhhHHHHHHHHHHcC-----------
Q 007743 320 ---TNEGLQQGYCVVPSAKRFILLYS-FLKR---N--------LSKKVMVFFSSCNSVKFHSELLRYIQ----------- 373 (591)
Q Consensus 320 ---~~~~l~~~~~~~~~~~k~~~l~~-~l~~---~--------~~~~~iVF~~s~~~~~~l~~~L~~~~----------- 373 (591)
....+.+.... ....+...+.. ++.. . .+.++||||+|+..|..++..|...+
T Consensus 494 d~~~~~~i~~~~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 494 DEKKLSAAENQQAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CHHHHHHTCSTTTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred cHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 00000000001 12233333333 2221 1 24589999999999999999998764
Q ss_pred -CCe-EeccCc----------c----------CH-----------------------------HHHHHHHHHhhcCCccE
Q 007743 374 -VDC-FDIHGK----------Q----------KQ-----------------------------QKRTTTFFDFCKAEKGI 402 (591)
Q Consensus 374 -~~~-~~lh~~----------~----------~~-----------------------------~~R~~~~~~F~~g~~~v 402 (591)
+.+ ..+||. + ++ ..|..+++.|++|+.+|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 454 456642 2 22 24788999999999999
Q ss_pred EEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCC---cceEEEEeCh
Q 007743 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGA---RGNALLFLIP 456 (591)
Q Consensus 403 LvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~---~g~~i~~~~~ 456 (591)
||+|+++.+|+|+|.+ .|+++|.|.+...|+||+||++|.++. .|.++.|+..
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999999999 788999999999999999999997632 3677777654
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.4e-29 Score=280.20 Aligned_cols=325 Identities=16% Similarity=0.158 Sum_probs=217.7
Q ss_pred CCcHHHHHhhcccc---------CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLM---------VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 124 ~~~~~Q~~~i~~il---------~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
.|+|+|.+++..+. .+..+|++.+||+|||++++..+...+...........++|||+|+ .|+.|+.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999874 4567999999999999998776655443321111123468999996 8889999999
Q ss_pred HHHHhhcCCeEEEEEcCccchHH--HHHHhc------CCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc
Q 007743 195 KDLLKYHSQTVGLVIGGSARRGE--AERIVK------GVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF 266 (591)
Q Consensus 195 ~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~------~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f 266 (591)
.+++.. ...+..+.+|...... ...... ..+|+|+|++.+...... +....+++||+||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV---LHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT---TTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH---hhcCCccEEEEECceecCChh-
Confidence 888655 3455566666433221 112211 378999999999765432 334578999999999997543
Q ss_pred HHHHHHHHHhCCCCCccEEEEeccCchhH-H-------------------------------------------------
Q 007743 267 EEEMRQIMKLLPKKDRQTALFSATQTKKV-E------------------------------------------------- 296 (591)
Q Consensus 267 ~~~~~~i~~~l~~~~~q~ll~SAT~~~~~-~------------------------------------------------- 296 (591)
......+..+. ....+++|||+-.+- .
T Consensus 209 -~~~~~al~~l~--~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 -NQTYLALNSMN--AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp -HHHHHHHHHHC--CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc--cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 23333444444 457899999963321 0
Q ss_pred HHHH---hhC-C---------CCCeEE---EecCCCcc----------------cccCC-----------c---------
Q 007743 297 DLAR---LSF-Q---------TTPVYI---DVDDGRTK----------------VTNEG-----------L--------- 324 (591)
Q Consensus 297 ~l~~---~~~-~---------~~~~~i---~~~~~~~~----------------~~~~~-----------l--------- 324 (591)
.+.. .++ + -++... .+.-.... ..... +
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0000 000 0 011111 00000000 00000 0
Q ss_pred -------------------eeE----EEecCchhHHHHHHHHHHh---cCCCcEEEEecChhhHHHHHHHHHHcCCCeEe
Q 007743 325 -------------------QQG----YCVVPSAKRFILLYSFLKR---NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFD 378 (591)
Q Consensus 325 -------------------~~~----~~~~~~~~k~~~l~~~l~~---~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 378 (591)
... ........|+..+..++.. ..+.++|||+++...++.+...|...++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 000 0000113344455444443 35789999999999999999999999999999
Q ss_pred ccCccCHHHHHHHHHHhhcCCc---cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCc-ceEEEEe
Q 007743 379 IHGKQKQQKRTTTFFDFCKAEK---GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGAR-GNALLFL 454 (591)
Q Consensus 379 lh~~~~~~~R~~~~~~F~~g~~---~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~-g~~i~~~ 454 (591)
+||++++.+|..+++.|++|.. .+|++|+++++|||++++++||+||+|+++..|.|++||++|.|..+ ..++.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 9999999999999999999875 48999999999999999999999999999999999999999987432 3344455
Q ss_pred Chh
Q 007743 455 IPE 457 (591)
Q Consensus 455 ~~~ 457 (591)
+..
T Consensus 526 ~~~ 528 (644)
T 1z3i_X 526 STG 528 (644)
T ss_dssp ETT
T ss_pred ECC
Confidence 543
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.3e-30 Score=288.97 Aligned_cols=328 Identities=15% Similarity=0.196 Sum_probs=224.8
Q ss_pred CCcHHHHHhhcccc----CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLM----VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.|+|+|.+++..++ .++++|++.+||+|||++++..+...+... .....+||||| ..|+.|+.+.+.+++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~----~~~~~~LIV~P-~sll~qW~~E~~~~~p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR----RQNGPHIIVVP-LSTMPAWLDTFEKWAP 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH----SCCSCEEEECC-TTTHHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc----CCCCCEEEEEC-chHHHHHHHHHHHHCC
Confidence 68999999998776 789999999999999999766555443332 12445899999 6788898888887753
Q ss_pred hcCCeEEEEEcCccchHHHHHH------------hcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccH
Q 007743 200 YHSQTVGLVIGGSARRGEAERI------------VKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFE 267 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~~~~~~~l------------~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~ 267 (591)
+..+.+..|+.......... ...++|+|+|++.+...... +....+++||+||||++.+.+
T Consensus 311 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 311 --DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp --TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--
T ss_pred --CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--
Confidence 45666666665444333221 23478999999999765432 222357899999999996533
Q ss_pred HHHHHHHHhCCCCCccEEEEeccCch-hHHH---HHHhhCC----------------------------CCCeEEEecCC
Q 007743 268 EEMRQIMKLLPKKDRQTALFSATQTK-KVED---LARLSFQ----------------------------TTPVYIDVDDG 315 (591)
Q Consensus 268 ~~~~~i~~~l~~~~~q~ll~SAT~~~-~~~~---l~~~~~~----------------------------~~~~~i~~~~~ 315 (591)
..+...+..++ ....+++|||+-. .+.+ +...... -.|..+.....
T Consensus 384 s~~~~~l~~l~--~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 461 (800)
T 3mwy_W 384 SSLYESLNSFK--VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKK 461 (800)
T ss_dssp SHHHHHHTTSE--EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGG
T ss_pred hHHHHHHHHhh--hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHH
Confidence 34455566664 4567889999732 1111 1111100 00111110000
Q ss_pred CcccccCCceeEEEec----------------------------------------------------------------
Q 007743 316 RTKVTNEGLQQGYCVV---------------------------------------------------------------- 331 (591)
Q Consensus 316 ~~~~~~~~l~~~~~~~---------------------------------------------------------------- 331 (591)
...............+
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 0000000000000000
Q ss_pred -----------CchhHHHHHHHHHHhc--CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcC
Q 007743 332 -----------PSAKRFILLYSFLKRN--LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398 (591)
Q Consensus 332 -----------~~~~k~~~l~~~l~~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g 398 (591)
....|+..|..++... .+.++|||+.....+..+...|...++.+..+||+++..+|..+++.|+++
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 0133566666777653 467999999999999999999999999999999999999999999999986
Q ss_pred Cc---cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCC-cceEEEEeChh--hHHHHHHH
Q 007743 399 EK---GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGA-RGNALLFLIPE--ELQFLRYL 465 (591)
Q Consensus 399 ~~---~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~-~g~~i~~~~~~--e~~~~~~l 465 (591)
.. .+|++|.+++.|||++.+++||+||+|+|+..+.||+||++|.|.. ...++.|++.. |...+..+
T Consensus 622 ~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~ 694 (800)
T 3mwy_W 622 DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 694 (800)
T ss_dssp TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred CCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 54 4999999999999999999999999999999999999999998743 34445566654 33444444
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.4e-28 Score=263.77 Aligned_cols=132 Identities=24% Similarity=0.295 Sum_probs=114.8
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 119 DMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 119 ~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
-+|+ .||++|..++|.++.|+ |++++||+|||++|.+|++...+ .|..|+||+||++||.|+++++..+.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-------~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-------TGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-------TCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-------hCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 3799 89999999999999998 99999999999999999964433 35679999999999999999999999
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHH-HHHHhcCC-----CCccC---CceEEEEeCchhhh
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRL-LDHLQNTK-----GFIYK---NLKCLVIDEADRIL 262 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~-----~~~~~---~l~~lVlDEah~l~ 262 (591)
.++++.+++++||.+.. .+....+++|+|+||++| +++|.... .+.++ .+.++||||||.|+
T Consensus 145 ~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999998743 344445799999999999 89887653 24567 89999999999987
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.7e-27 Score=263.11 Aligned_cols=172 Identities=18% Similarity=0.180 Sum_probs=130.6
Q ss_pred CccEEEEeccCchhHHHHHHhhCCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHh--cCCCcEEEEecC
Q 007743 281 DRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSS 358 (591)
Q Consensus 281 ~~q~ll~SAT~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVF~~s 358 (591)
..|+++||||+++..... . ...+.......... ...+...+...+...+...+.. ..+.++||||+|
T Consensus 380 ~~q~i~~SAT~~~~~~~~-----~--~~~~~~~~r~~~l~----~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 448 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH-----S--GRVVEQIIRPTGLL----DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLT 448 (664)
T ss_dssp CSEEEEEESSCCHHHHHH-----C--SEEEEECSCTTCCC----CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCEEEEecCCCHHHHHh-----h--hCeeeeeeccCCCC----CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECC
Confidence 578999999998654221 0 11122111000000 0011122233344444444443 246799999999
Q ss_pred hhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCC-----CCChhhh
Q 007743 359 CNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDP-----PDEPKEY 433 (591)
Q Consensus 359 ~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~-----P~s~~~y 433 (591)
+..++.++..|...++.+..+||+|++.+|..+++.|+.|+..|||||+++++|+|+|+|++||++|. |.+..+|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred hhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 434 IHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 434 ~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
+||+|||||. + .|.+++|+.+.+..+.+.+
T Consensus 529 iQr~GRagR~-~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 529 IQTIGRAARN-A-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp HHHHGGGTTS-T-TCEEEEECSSCCHHHHHHH
T ss_pred HHHHCccCcC-C-CCEEEEEEcCCCHHHHHHH
Confidence 9999999996 3 7999999998766555444
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=2e-27 Score=216.40 Aligned_cols=152 Identities=29% Similarity=0.481 Sum_probs=141.6
Q ss_pred ccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCC
Q 007743 320 TNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAE 399 (591)
Q Consensus 320 ~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~ 399 (591)
...++.|.+..++...|+..|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45668999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCc
Q 007743 400 KGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPV 472 (591)
Q Consensus 400 ~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~ 472 (591)
..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| ..|.+++|+.+.+..+++.+.+ .+.++
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 158 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG-NKGKAISFVTAFEKRFLADIEEYIGFEI 158 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT-CCEEEEEEECGGGHHHHHHHHHHHTSCC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC-CCceEEEEecHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999999999999975 6899999999999988888754 34444
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=216.76 Aligned_cols=157 Identities=22% Similarity=0.356 Sum_probs=139.7
Q ss_pred ccCCceeEEEecCchh-HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcC
Q 007743 320 TNEGLQQGYCVVPSAK-RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKA 398 (591)
Q Consensus 320 ~~~~l~~~~~~~~~~~-k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g 398 (591)
+..++.|.|..++... |+..|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999998766 999999999888788999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCccccCCCCCCCcEEEEcCCC------CChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCC
Q 007743 399 EKGILLCTDVAARGLDIPAVDWIVQYDPP------DEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVP 471 (591)
Q Consensus 399 ~~~vLvaT~~~~~GiDip~v~~VI~~~~P------~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~ 471 (591)
...|||||+++++|+|+|++++||+||+| .++..|+||+||+||.| ..|.+++|+.+.+...++.+.+ .+.+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG-KKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC-CCceEEEEEccchHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 99999999999999975 6899999999999888887754 3555
Q ss_pred cccccc
Q 007743 472 VKEYEF 477 (591)
Q Consensus 472 ~~~~~~ 477 (591)
+.....
T Consensus 163 ~~~~~~ 168 (175)
T 2rb4_A 163 IKQLNA 168 (175)
T ss_dssp CEEECS
T ss_pred ccccCC
Confidence 555443
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=4.4e-26 Score=251.76 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccccC
Q 007743 335 KRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARG 412 (591)
Q Consensus 335 ~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 412 (591)
.+...+...+.. ..+.++||||+|+..++.++..|...++.+..+||++++.+|..+++.|+.|+..|||||+++++|
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~G 508 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTT
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCC
Confidence 344444444443 246799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCC-----CCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHH
Q 007743 413 LDIPAVDWIVQYDP-----PDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYL 465 (591)
Q Consensus 413 iDip~v~~VI~~~~-----P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l 465 (591)
+|+|+|++||++|. |.+..+|+||+|||||. ..|.+++|+++.+..+.+.+
T Consensus 509 lDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~--~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS--TTCEEEEECSSCCHHHHHHH
T ss_pred cccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC--CCCEEEEEEeCCCHHHHHHH
Confidence 99999999999997 99999999999999995 47999999998766554444
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.8e-27 Score=216.42 Aligned_cols=154 Identities=27% Similarity=0.424 Sum_probs=139.3
Q ss_pred cCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCc
Q 007743 321 NEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK 400 (591)
Q Consensus 321 ~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~ 400 (591)
...+.|.|..++...|+..|..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 45788999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChh-hHHHHHHHHH-cCCCcccc
Q 007743 401 GILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE-ELQFLRYLKA-AKVPVKEY 475 (591)
Q Consensus 401 ~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~-e~~~~~~l~~-~~~~~~~~ 475 (591)
.|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| ..|.+++|+++. +..+++.+.+ .+.++...
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISEL 158 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGG-CCCEEEEEECSHHHHHHHHHHHHHHCCCEEEC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCC-CCcEEEEEEcChhHHHHHHHHHHHHhcchhhC
Confidence 99999999999999999999999999999999999999999975 689999999975 5667777754 34555443
No 80
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=7.5e-27 Score=222.00 Aligned_cols=154 Identities=29% Similarity=0.395 Sum_probs=138.8
Q ss_pred ceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEE
Q 007743 324 LQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGIL 403 (591)
Q Consensus 324 l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vL 403 (591)
+.+.+..++...|+..|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 45667778889999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccccC
Q 007743 404 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEFD 478 (591)
Q Consensus 404 vaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~~ 478 (591)
|||+++++|+|+|++++||+||+|.++..|+||+|||||.| ..|.|++|+++.+...++.+.+ .+.++.....+
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC---BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC-CCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 99999999999999999999999999999999999999975 6799999999999988888754 44555554443
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-26 Score=211.49 Aligned_cols=153 Identities=27% Similarity=0.430 Sum_probs=135.5
Q ss_pred CceeEEEecCchh-HHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCcc
Q 007743 323 GLQQGYCVVPSAK-RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401 (591)
Q Consensus 323 ~l~~~~~~~~~~~-k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~ 401 (591)
.+.|.|..++... |...|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5778888888777 999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCccccc
Q 007743 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYE 476 (591)
Q Consensus 402 vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~ 476 (591)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||.| ..|.+++|+++.+...++.+.+ .+..++...
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC-CCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 9999999999999999999999999999999999999999975 6899999999999888887754 455554443
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=6.3e-27 Score=218.39 Aligned_cols=159 Identities=27% Similarity=0.427 Sum_probs=130.2
Q ss_pred CCCCCeEEEecCCCcccccCCceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCc
Q 007743 303 FQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGK 382 (591)
Q Consensus 303 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~ 382 (591)
+..+|..|.+... ..+...+.|.+..++...|+..|..++... .+++||||+++..++.++..|...++.+..+||+
T Consensus 11 ~~~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 11 VDLGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccCCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3445777776543 346678999999999999999999998875 4689999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhcCCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChh-hHHH
Q 007743 383 QKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPE-ELQF 461 (591)
Q Consensus 383 ~~~~~R~~~~~~F~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~-e~~~ 461 (591)
|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|.++..|+||+||+||.| ..|.+++|+++. +..+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g-~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG-NTGIATTFINKACDESV 166 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC----CCEEEEEECTTSCHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC-CCcEEEEEEcCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 689999999986 5555
Q ss_pred HHHH
Q 007743 462 LRYL 465 (591)
Q Consensus 462 ~~~l 465 (591)
++.+
T Consensus 167 ~~~l 170 (191)
T 2p6n_A 167 LMDL 170 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=214.81 Aligned_cols=147 Identities=29% Similarity=0.458 Sum_probs=122.6
Q ss_pred cccCCceeEEEecCchhHHHHHHHHHHhc-CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhc
Q 007743 319 VTNEGLQQGYCVVPSAKRFILLYSFLKRN-LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCK 397 (591)
Q Consensus 319 ~~~~~l~~~~~~~~~~~k~~~l~~~l~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~ 397 (591)
.+..++.|.|..++...|...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999999999886 47899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHH
Q 007743 398 AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLK 466 (591)
Q Consensus 398 g~~~vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~ 466 (591)
|+..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| ..|.+++|+++.+...++.+.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~ 162 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLL 162 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT-SCEEEEEEECGGGGGGHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC-CCcEEEEEEchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975 689999999998876665553
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=4e-26 Score=227.19 Aligned_cols=154 Identities=29% Similarity=0.394 Sum_probs=137.5
Q ss_pred CceeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccE
Q 007743 323 GLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGI 402 (591)
Q Consensus 323 ~l~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~v 402 (591)
.+.+.+..++...|+..|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 35788889999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH-cCCCcccccc
Q 007743 403 LLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA-AKVPVKEYEF 477 (591)
Q Consensus 403 LvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~-~~~~~~~~~~ 477 (591)
||||+++++|+|+|++++||+||+|.++..|+||+|||||.| ..|.|++|+++.+..+++.+.+ .+.++.....
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g-~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCC-CCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999975 6799999999999888888754 3455554443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.4e-26 Score=212.48 Aligned_cols=144 Identities=28% Similarity=0.451 Sum_probs=133.2
Q ss_pred CceeEEEecCc-hhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCcc
Q 007743 323 GLQQGYCVVPS-AKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG 401 (591)
Q Consensus 323 ~l~~~~~~~~~-~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~ 401 (591)
++.|.|..++. ..|...|..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 46677777877 88999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcceEEEEeChhhHHHHHHHHH
Q 007743 402 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKA 467 (591)
Q Consensus 402 vLvaT~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~~i~~~~~~e~~~~~~l~~ 467 (591)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| ..|.+++|+.+.+...++.+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 9999999999999999999999999999999999999999975 6899999999988877776644
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=203.10 Aligned_cols=169 Identities=20% Similarity=0.153 Sum_probs=122.8
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH-HHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ-THAVAKDLL 198 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q-~~~~~~~~~ 198 (591)
.....|+++|.++++.++.++++++.+|||+|||++|++|++..+...... ..+.++||++|+++|+.| +.+.+..+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-cCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 344579999999999999999999999999999999999998877653211 235679999999999999 778888776
Q ss_pred hhcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCC-----CccCCceEEEEeCchhhhccccHHHHH-H
Q 007743 199 KYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKG-----FIYKNLKCLVIDEADRILEANFEEEMR-Q 272 (591)
Q Consensus 199 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-----~~~~~l~~lVlDEah~l~~~~f~~~~~-~ 272 (591)
.. +..+..+.|+.........+..+++|+|+||++|..++..... +.+.++++||+||||++...++...+. .
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 6778888888766655555566799999999999998876532 456789999999999998765554443 3
Q ss_pred HHHhC------------CCCCccEEEEecc
Q 007743 273 IMKLL------------PKKDRQTALFSAT 290 (591)
Q Consensus 273 i~~~l------------~~~~~q~ll~SAT 290 (591)
++... +....+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 1136799999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=2.5e-23 Score=225.42 Aligned_cols=297 Identities=22% Similarity=0.234 Sum_probs=166.5
Q ss_pred CCCCCCcHHHHHhhc----cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 120 MGFQFMTQIQARAVP----PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 120 ~~~~~~~~~Q~~~i~----~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.|| .|+|+|.+++. .+..|++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 467 79999999765 45689999999999999999999998754 5689999999999999998776
Q ss_pred HHHhhcCCeEEEEEcCccc--------h------------------------HHH---------------HHHhcCCCEE
Q 007743 196 DLLKYHSQTVGLVIGGSAR--------R------------------------GEA---------------ERIVKGVNLL 228 (591)
Q Consensus 196 ~~~~~~~~~~~~~~gg~~~--------~------------------------~~~---------------~~l~~~~~Ii 228 (591)
.+ +..+..+.|.... . ..+ +....+++||
T Consensus 73 ~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GG----TCCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 53 3444443332110 0 000 1112457999
Q ss_pred EeCchHHHHHHhcCC-C-----CccCCceEEEEeCchhhhcc-----------ccHHHHH--------------------
Q 007743 229 VATPGRLLDHLQNTK-G-----FIYKNLKCLVIDEADRILEA-----------NFEEEMR-------------------- 271 (591)
Q Consensus 229 v~Tp~~L~~~l~~~~-~-----~~~~~l~~lVlDEah~l~~~-----------~f~~~~~-------------------- 271 (591)
|+|+..|++.+.... . -.+....++||||||+|.+. .+...+.
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 228 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYI 228 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 999999987543321 0 02356789999999998431 0000000
Q ss_pred ----------------------------------HHHHh-----------------------------------C-CC--
Q 007743 272 ----------------------------------QIMKL-----------------------------------L-PK-- 279 (591)
Q Consensus 272 ----------------------------------~i~~~-----------------------------------l-~~-- 279 (591)
.++.. + |.
T Consensus 229 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~ 308 (540)
T 2vl7_A 229 NLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDV 308 (540)
T ss_dssp HHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCH
T ss_pred HHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHH
Confidence 00000 0 00
Q ss_pred ---------CCccEEEEeccCchhHHHHHHhhCCCCCeE-EEecCCCcccccCCceeEEEe--c--Cch-------hHHH
Q 007743 280 ---------KDRQTALFSATQTKKVEDLARLSFQTTPVY-IDVDDGRTKVTNEGLQQGYCV--V--PSA-------KRFI 338 (591)
Q Consensus 280 ---------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~~-i~~~~~~~~~~~~~l~~~~~~--~--~~~-------~k~~ 338 (591)
....+|++|||+++.. .+. ..+ ...... . ...+.+.. + +.. ....
T Consensus 309 ~~~l~~~~~~~~~~IltSATL~p~~------~~~--~~f~~~~~~~---~---g~~~~~~~~~l~s~f~~r~~~~~~~~~ 374 (540)
T 2vl7_A 309 NQLIEDALNVKTFKVLMSGTLPESL------TLT--NSYKIVVNES---Y---GRGEYYYCPNVTSELRKRNSNIPIYSI 374 (540)
T ss_dssp HHHHHHHTCCSSCEEEEESSCCTTC------CCT--TEEEEECCCC-------CCCEEEECTTCCCCGGGHHHHHHHHHH
T ss_pred HHHHHHhcCccCCeEEEcccCCCCc------ccc--hhcCCchhhe---e---cCCcceeccccCCCcccccCHHHHHHH
Confidence 0011377777777620 000 001 111000 0 01111110 0 111 1122
Q ss_pred HHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEE--EeCccccCCCCC
Q 007743 339 LLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILL--CTDVAARGLDIP 416 (591)
Q Consensus 339 ~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLv--aT~~~~~GiDip 416 (591)
.+..++. ..++++||||+|...++.++..|.. .+ ...++.. ..|..+++.|+++. .||+ +|+.+++|||+|
T Consensus 375 ~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 375 LLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 3333333 3467999999999999999888754 33 3445554 46888999998864 6777 889999999999
Q ss_pred C----CcEEEEcCCCCC-h-----------------------------hhhhhhccccccCCCCcceEEE
Q 007743 417 A----VDWIVQYDPPDE-P-----------------------------KEYIHRVGRTARGEGARGNALL 452 (591)
Q Consensus 417 ~----v~~VI~~~~P~s-~-----------------------------~~y~qr~GR~gR~~~~~g~~i~ 452 (591)
+ +++||++++|.. + ....|.+||+-|..+..|..++
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 8 899999999842 1 1235899999996445565443
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.7e-23 Score=197.14 Aligned_cols=183 Identities=15% Similarity=0.204 Sum_probs=134.2
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHH
Q 007743 110 SQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQ 189 (591)
Q Consensus 110 ~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q 189 (591)
++.+.+.+...+...++++|.++++.+..|++++++||||||||+++.++++..+..... ..+.++++++|+++|+.|
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--GGGCEEEEEESSHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--CCceEEEEeccchHHHHH
Confidence 444444444445556899999999999999999999999999999999999887765321 124589999999999999
Q ss_pred HHHHHHHHHh-hcCCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhh-hccccH
Q 007743 190 THAVAKDLLK-YHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRI-LEANFE 267 (591)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l-~~~~f~ 267 (591)
+.+.+..... ..+..++......... ...+++|+|+|||+|++++.. .++++++|||||||++ ++.+|.
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHH
Confidence 9887765432 2233343322211111 113478999999999999876 3689999999999986 777777
Q ss_pred -HHHHHHHHhCCCCCccEEEEeccCchhHHHHHHhhCCCCCe
Q 007743 268 -EEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPV 308 (591)
Q Consensus 268 -~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~ 308 (591)
..+..++...+ ..|+++||||++... +.+ ++...|.
T Consensus 196 ~~~l~~i~~~~~--~~~~il~SAT~~~~~--~~~-~~~~~pv 232 (235)
T 3llm_A 196 LVVLRDVVQAYP--EVRIVLMSATIDTSM--FCE-YFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHCT--TSEEEEEECSSCCHH--HHH-HTTSCCC
T ss_pred HHHHHHHHhhCC--CCeEEEEecCCCHHH--HHH-HcCCCCE
Confidence 46677777765 689999999999876 554 4444343
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=6.2e-21 Score=207.42 Aligned_cols=282 Identities=16% Similarity=0.139 Sum_probs=180.2
Q ss_pred CCcHHHHHhhc----cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVP----PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~----~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.++|.|.+.+. .+..|++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------KPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------CSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------CCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 68999998766 45689999999999999999999999972 57899999999999999999888877
Q ss_pred hcCCeEEEEEcCccc---------------------------------hHHH------------------HHHhcCCCEE
Q 007743 200 YHSQTVGLVIGGSAR---------------------------------RGEA------------------ERIVKGVNLL 228 (591)
Q Consensus 200 ~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~~~~~Ii 228 (591)
..+.++..+.|..+. .... +.....++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 667777777664321 0111 2233468999
Q ss_pred EeCchHHHHHHhcCCCCc-cCCceEEEEeCchhhhccc------------------------------------------
Q 007743 229 VATPGRLLDHLQNTKGFI-YKNLKCLVIDEADRILEAN------------------------------------------ 265 (591)
Q Consensus 229 v~Tp~~L~~~l~~~~~~~-~~~l~~lVlDEah~l~~~~------------------------------------------ 265 (591)
|+||..|++...... +. .....+|||||||+|.+ .
T Consensus 153 V~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 153 ALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999998764433 22 24678999999999876 1
Q ss_pred -------------cHHHHHHH----------------------------HHh--------------C---C---------
Q 007743 266 -------------FEEEMRQI----------------------------MKL--------------L---P--------- 278 (591)
Q Consensus 266 -------------f~~~~~~i----------------------------~~~--------------l---~--------- 278 (591)
+...+..+ +.. + |
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 000 0 0
Q ss_pred -CCC-ccEEEEeccCchhHHHHHHhhCCCC-CeEE---EecCCCcccccCCceeEEEec--Cc------hhHHHHHHHHH
Q 007743 279 -KKD-RQTALFSATQTKKVEDLARLSFQTT-PVYI---DVDDGRTKVTNEGLQQGYCVV--PS------AKRFILLYSFL 344 (591)
Q Consensus 279 -~~~-~q~ll~SAT~~~~~~~l~~~~~~~~-~~~i---~~~~~~~~~~~~~l~~~~~~~--~~------~~k~~~l~~~l 344 (591)
... ..+|++|||+++ ...+... +.-. +... ...-.. .. .... ..+... +. ..-...+...+
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~-lGl~~~~~~~~~~~~~~s-pf-~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~i 385 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKV-WGIKRNMLYLDVEREIQK-RV-SGSY-ECYIGVDVTSKYDMRSDNMWKRYADYL 385 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHT-SCCCSCEEEEEHHHHTTS-CC-SCEE-EEEEECSCCCCTTTCCHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHH-hCCCCccccccceeecCC-cC-CCce-EEEEeCCCCCccccCCHHHHHHHHHHH
Confidence 112 678999999987 4444443 3222 2210 111111 11 1111 122211 11 11122233322
Q ss_pred H---hcCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe--CccccCCCCC---
Q 007743 345 K---RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT--DVAARGLDIP--- 416 (591)
Q Consensus 345 ~---~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT--~~~~~GiDip--- 416 (591)
. ...++.++||++|....+.+++ ..+..++.-..+++ +...++.|+.....||+|| ..+..|||+|
T Consensus 386 ~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 386 LKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccC
Confidence 2 2346799999999999998886 34555554334555 3456777754445899998 6999999999
Q ss_pred --CCcEEEEcCCCC
Q 007743 417 --AVDWIVQYDPPD 428 (591)
Q Consensus 417 --~v~~VI~~~~P~ 428 (591)
.++.||..++|.
T Consensus 460 g~~l~~viI~~lPf 473 (551)
T 3crv_A 460 RSLISDVVIVGIPY 473 (551)
T ss_dssp EESEEEEEEESCCC
T ss_pred CcceeEEEEEcCCC
Confidence 378899887763
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=4.7e-22 Score=197.97 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=127.4
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|+++|.++++.++.+++.++++|||+|||+++++++...+.. .+.++|||+||++|+.|+++.+.++......
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH------CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHhcccccc
Confidence 7999999999999998999999999999999998888776543 2347999999999999999999988766666
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCcc
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q 283 (591)
.+..+.+|..... ....+.+|+|+||+++..... ..+.++++||+||||++.. ..+..++..++. ..+
T Consensus 187 ~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~----~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~-~~~ 254 (282)
T 1rif_A 187 MIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLATG----KSISSIISGLNN-CMF 254 (282)
T ss_dssp GEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT-CCE
T ss_pred eEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHH----HHHhhCCEEEEECCccCCc----ccHHHHHHHhhc-CCe
Confidence 7788888765543 122458999999998754321 3457889999999999974 467778887765 789
Q ss_pred EEEEeccCchhHHHHHH
Q 007743 284 TALFSATQTKKVEDLAR 300 (591)
Q Consensus 284 ~ll~SAT~~~~~~~l~~ 300 (591)
++++|||++.....+..
T Consensus 255 ~l~lSATp~~~~~~~~~ 271 (282)
T 1rif_A 255 KFGLSGSLRDGKANIMQ 271 (282)
T ss_dssp EEEECSSCCTTSTTHHH
T ss_pred EEEEeCCCCCcchHHHH
Confidence 99999999876544433
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=6.6e-18 Score=184.99 Aligned_cols=82 Identities=22% Similarity=0.118 Sum_probs=68.9
Q ss_pred CCcHHHHHhhc----cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVP----PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~----~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.|+|.|.+.+. .+..|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~------~~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE------RKLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH------HTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh------cCCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 57999988775 56689999999999999999999999988764 256899999999999999999999987
Q ss_pred hcCCeEEEEEcC
Q 007743 200 YHSQTVGLVIGG 211 (591)
Q Consensus 200 ~~~~~~~~~~gg 211 (591)
..++++..+.|+
T Consensus 77 ~~~~~~~~l~gr 88 (620)
T 4a15_A 77 TMKIRAIPMQGR 88 (620)
T ss_dssp HSCCCEEECCCH
T ss_pred ccCeEEEEEECC
Confidence 777777666554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=8.7e-19 Score=169.21 Aligned_cols=138 Identities=22% Similarity=0.203 Sum_probs=110.5
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.|+++.+.++ +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~----~~ 158 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----GE 158 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHHHHGGG----CG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHhC----CC
Confidence 6899999999999999999999999999999988776542 456999999999999998887762 56
Q ss_pred e-EEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCc
Q 007743 204 T-VGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282 (591)
Q Consensus 204 ~-~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~ 282 (591)
. +..+.|+... ..+|+|+||+.+...+.. ....+++|||||||++.+..|. .++..++ ..
T Consensus 159 ~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~----~i~~~~~--~~ 219 (237)
T 2fz4_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYV----QIAQMSI--AP 219 (237)
T ss_dssp GGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHH----HHHHTCC--CS
T ss_pred CeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHH----HHHHhcc--CC
Confidence 6 7777766542 479999999998776543 1246899999999999876553 4556665 57
Q ss_pred cEEEEeccCchh
Q 007743 283 QTALFSATQTKK 294 (591)
Q Consensus 283 q~ll~SAT~~~~ 294 (591)
+++++|||++..
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 889999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=3.8e-18 Score=167.62 Aligned_cols=125 Identities=12% Similarity=0.167 Sum_probs=98.3
Q ss_pred CchhHHHHHHHHHHhc--CCCcEEEEecChhhHHHHHHHHHHc-CCCeEeccCccCHHHHHHHHHHhhcC-Ccc-EEEEe
Q 007743 332 PSAKRFILLYSFLKRN--LSKKVMVFFSSCNSVKFHSELLRYI-QVDCFDIHGKQKQQKRTTTFFDFCKA-EKG-ILLCT 406 (591)
Q Consensus 332 ~~~~k~~~l~~~l~~~--~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~R~~~~~~F~~g-~~~-vLvaT 406 (591)
....|+..|..++... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ ... +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4467888888888764 6789999999999999999999884 99999999999999999999999998 666 78999
Q ss_pred CccccCCCCCCCcEEEEcCCCCChhhhhhhccccccCCCCcce--EEEEeChh
Q 007743 407 DVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGN--ALLFLIPE 457 (591)
Q Consensus 407 ~~~~~GiDip~v~~VI~~~~P~s~~~y~qr~GR~gR~~~~~g~--~i~~~~~~ 457 (591)
+++++|||++++++||+||+|+++..|.||+||++|.|. .+. ++.|++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq-~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQ-TRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC---------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCC-CCceEEEEEeeCC
Confidence 999999999999999999999999999999999999874 343 45555553
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.90 E-value=2.1e-09 Score=117.47 Aligned_cols=145 Identities=21% Similarity=0.234 Sum_probs=91.4
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCCch--HHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 126 TQIQARAVPPLMVGKDVLGAARTGSGKT--LAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 126 ~~~Q~~~i~~il~g~dvlv~a~TGsGKT--l~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
+++|+.+++.++.++++++.|++||||| ++++++++..+.. ..+.++++++||..+|.++.+.+.......++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-----~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-----GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-----SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-----cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999 6677777665321 23567999999999999998888776655442
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCcc
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q 283 (591)
..... .+... ....+ ..++-.+|+... +.... .....+++||||||+ |++ .+.+..++..++. ..|
T Consensus 226 ~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~~--~~~~~-~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~-~~~ 291 (608)
T 1w36_D 226 TDEQK-KRIPE--DASTL---HRLLGAQPGSQR--LRHHA-GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPD-HAR 291 (608)
T ss_dssp CSCCC-CSCSC--CCBTT---TSCC-------------CT-TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCT-TCE
T ss_pred CHHHH-hccch--hhhhh---HhhhccCCCchH--HHhcc-CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCC-CCE
Confidence 21100 00000 00000 112222333211 11111 112268999999999 554 4577888888886 788
Q ss_pred EEEEec
Q 007743 284 TALFSA 289 (591)
Q Consensus 284 ~ll~SA 289 (591)
++++.=
T Consensus 292 liLvGD 297 (608)
T 1w36_D 292 VIFLGD 297 (608)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 888753
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=2.8e-05 Score=84.08 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.+++.|..++..++.++.+++.|+.|+|||... ..++..+.. .+.++++++||...|..+.+.+. .
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~------~g~~Vl~~ApT~~Aa~~L~e~~~-------~ 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES------LGLEVGLCAPTGKAARRLGEVTG-------R 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH------TTCCEEEEESSHHHHHHHHHHHT-------S
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh------cCCeEEEecCcHHHHHHhHhhhc-------c
Confidence 589999999999999999999999999999763 223333332 35679999999998876654321 1
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCcc
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q 283 (591)
.... ...+.. .. |.. +.... ......++||||||+.+. ...+..++..++. ..+
T Consensus 255 ~a~T----------ih~ll~---~~---~~~----~~~~~-~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~-~~~ 308 (574)
T 3e1s_A 255 TAST----------VHRLLG---YG---PQG----FRHNH-LEPAPYDLLIVDEVSMMG----DALMLSLLAAVPP-GAR 308 (574)
T ss_dssp CEEE----------HHHHTT---EE---TTE----ESCSS-SSCCSCSEEEECCGGGCC----HHHHHHHHTTSCT-TCE
T ss_pred cHHH----------HHHHHc---CC---cch----hhhhh-cccccCCEEEEcCccCCC----HHHHHHHHHhCcC-CCE
Confidence 1111 111110 00 000 00111 123357899999999764 3466777777775 556
Q ss_pred EEEE
Q 007743 284 TALF 287 (591)
Q Consensus 284 ~ll~ 287 (591)
++++
T Consensus 309 lilv 312 (574)
T 3e1s_A 309 VLLV 312 (574)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.96 E-value=2.6e-05 Score=82.27 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=50.7
Q ss_pred HHHCCCCCCcHHHHHhhccccCC----C-cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHH
Q 007743 117 IQDMGFQFMTQIQARAVPPLMVG----K-DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTH 191 (591)
Q Consensus 117 l~~~~~~~~~~~Q~~~i~~il~g----~-dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~ 191 (591)
...+.|..|++-|++++..++.. + .+++.|+.|||||.+. ..++..+... ....+++++||...|..+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-----~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-----GETGIILAAPTHAAKKILS 91 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-----TCCCEEEEESSHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-----CCceEEEecCcHHHHHHHH
Confidence 34567889999999999876532 3 8999999999999663 3444454442 1236899999998887655
Q ss_pred HHH
Q 007743 192 AVA 194 (591)
Q Consensus 192 ~~~ 194 (591)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 433
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.96 E-value=6.8e-05 Score=82.19 Aligned_cols=69 Identities=20% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 122 FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 122 ~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
+..+++.|..++..++.+.-+++.||+|+|||.+.. .++..+... .+.++|+++||...+.++.+.+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS-----SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc-----CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 356899999999999888888999999999998743 334444431 356799999999999998877654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=8.4e-05 Score=83.43 Aligned_cols=69 Identities=22% Similarity=0.206 Sum_probs=54.3
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHH
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDL 197 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 197 (591)
..+++.|.+++..++.+.-+++.||.|||||.+..- ++..+... .+.++|+++||...+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 357899999999998887889999999999987433 33344331 2567999999999999988877654
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.86 E-value=2.2e-05 Score=86.68 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=52.0
Q ss_pred CCcHHHHHhhccccCCCc-EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMVGKD-VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
.+.+-|.+|+..++..++ .|++||.|||||.+.+-.+ ..+.. .+.++|+++||...+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I-~~l~~------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEII-LQAVK------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHH-HHHHH------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHH-HHHHh------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 478999999999987765 5899999999998754433 33433 356799999999999998877654
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.82 E-value=0.00013 Score=81.74 Aligned_cols=67 Identities=21% Similarity=0.140 Sum_probs=53.2
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
.+++.|..++..++.+.-+++.||+|+|||.+.. .++..+... .+.++++++||...|.++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-----CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-----CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4789999999999888888999999999998743 344444431 356799999999999988777654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.79 E-value=0.0013 Score=72.43 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=54.3
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
..+++-|.+++... ...++|.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhCC--CCCEEEEECCCCCHHHHHHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 46899999999743 567999999999999885544444333221 1235799999999999999998887753
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.45 E-value=0.00088 Score=65.78 Aligned_cols=123 Identities=9% Similarity=0.100 Sum_probs=88.2
Q ss_pred chhHHHHHHHHHHh--cCCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccc
Q 007743 333 SAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA 410 (591)
Q Consensus 333 ~~~k~~~l~~~l~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 410 (591)
...|+.+|..++.. ..+.+++||+...+..+.+..++...++.+..+.|.....+ .+. .+....|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCC
Confidence 45688888887765 34679999999999999999999999999999999955432 211 234555656677767
Q ss_pred cCCC-----CCCCcEEEEcCCCCChhhh-hhhccccccCC---CCcceEEEEeChhhHH
Q 007743 411 RGLD-----IPAVDWIVQYDPPDEPKEY-IHRVGRTARGE---GARGNALLFLIPEELQ 460 (591)
Q Consensus 411 ~GiD-----ip~v~~VI~~~~P~s~~~y-~qr~GR~gR~~---~~~g~~i~~~~~~e~~ 460 (591)
-|+| ....+.||.||.-+++..= +|.+-|+.|.+ ++.-.++.|++.....
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 6776 6789999999999999885 89888888863 2445677777765443
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.16 E-value=0.0041 Score=63.18 Aligned_cols=74 Identities=9% Similarity=0.071 Sum_probs=57.2
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~ 202 (591)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|++.-|..+++.+..+....+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-----~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-----SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 6899999998876555668999999999998866555443332 2456799999999999998888887776543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.91 E-value=0.0087 Score=64.96 Aligned_cols=143 Identities=10% Similarity=0.139 Sum_probs=85.7
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.|+|+|...+..+-..+-+++..+-|+|||.+....++-.+.. ..+..+++++|++..|..++..+..+....+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----NKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-----SSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 4799999988776556779999999999998866544444433 13567999999999999999888877765431
Q ss_pred --eEEEE-EcCccchHHHHHHhcCCCEEEe--CchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 204 --TVGLV-IGGSARRGEAERIVKGVNLLVA--TPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 204 --~~~~~-~gg~~~~~~~~~l~~~~~Iiv~--Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
..... ...... .+.+|..|.+. .|+.+. . .+..++|+||+|.+-+. ...+..+...+.
T Consensus 238 ~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lr----G------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~ 300 (592)
T 3cpe_A 238 FLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVR----G------NSFAMIYIEDCAFIPNF--HDSWLAIQPVIS 300 (592)
T ss_dssp TTSCCEEEECSSEE-----EETTSCEEEEEECCHHHHH----H------SCCSEEEEETGGGCTTH--HHHHHHHHHHHS
T ss_pred hhccccccCCccEE-----EecCCCEEEEEeCCCCCcc----C------CCcceEEEehhccCCch--hHHHHHHHHHhc
Confidence 11000 010000 01234444433 244332 1 13678999999987542 233444444443
Q ss_pred C-CCccEEEEe
Q 007743 279 K-KDRQTALFS 288 (591)
Q Consensus 279 ~-~~~q~ll~S 288 (591)
. ...+++++|
T Consensus 301 ~~~~~~ii~is 311 (592)
T 3cpe_A 301 SGRRSKIIITT 311 (592)
T ss_dssp SSSCCEEEEEE
T ss_pred cCCCceEEEEe
Confidence 2 134444444
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.51 E-value=0.0045 Score=54.05 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=25.7
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
+.++|||||++.+.... ...+..++..+......++++++..+
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999865533 55566666554432344244555533
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.50 E-value=0.006 Score=62.77 Aligned_cols=106 Identities=21% Similarity=0.144 Sum_probs=60.8
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE 219 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 219 (591)
+-.++.|+.|||||... .+.+ . ....+|++||++++..+.+.+... +. .
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~-~-------~~~~lVlTpT~~aa~~l~~kl~~~----~~---------~------ 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRV-N-------FEEDLILVPGRQAAEMIRRRANAS----GI---------I------ 210 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHC-C-------TTTCEEEESCHHHHHHHHHHHTTT----SC---------C------
T ss_pred cEEEEEcCCCCCHHHHH----HHHh-c-------cCCeEEEeCCHHHHHHHHHHhhhc----Cc---------c------
Confidence 44689999999999763 2322 1 124699999999998877655321 00 0
Q ss_pred HHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 220 RIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 220 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
.....-|.|-+.++. +.........++||||||- |.+.+ .+..++..++ ..+++++.
T Consensus 211 ---~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~--~~~vilvG 267 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGL-MLHTG---CVNFLVEMSL--CDIAYVYG 267 (446)
T ss_dssp ---CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGG-GSCHH---HHHHHHHHTT--CSEEEEEE
T ss_pred ---ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCC--CCEEEEec
Confidence 011223667666542 2211222347899999998 44444 3444444444 24455544
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.32 E-value=0.026 Score=51.05 Aligned_cols=40 Identities=28% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
.|+-.++.|++|+|||...+--+ ..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~-~~~~~------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV-EIYKL------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHH------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHH-HHHHH------CCCeEEEEeecc
Confidence 35667899999999998743222 22222 356788888873
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.32 E-value=0.011 Score=53.19 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.|+.+++.||+|+|||....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999997643
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.11 E-value=0.0032 Score=58.89 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
.|.-+++.|++|+|||.+.+--+ ..+.. .+.+++++.|...-- . ...+.... | ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~------~g~kVli~~~~~d~r---~--~~~i~srl--------G-~~---- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEY------ADVKYLVFKPKIDTR---S--IRNIQSRT--------G-TS---- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHH------TTCCEEEEEECCCGG---G--CSSCCCCC--------C-CS----
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHh------cCCEEEEEEeccCch---H--HHHHHHhc--------C-CC----
Confidence 45567889999999998743332 22222 356788888754210 0 00001111 1 00
Q ss_pred HHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhh
Q 007743 218 AERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRIL 262 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~ 262 (591)
...+-+.+...+++.+.... .-...++|||||++.+.
T Consensus 66 ------~~~~~~~~~~~i~~~i~~~~--~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ------LPSVEVESAPEILNYIMSNS--FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ------SCCEEESSTHHHHHHHHSTT--SCTTCCEEEECSGGGSC
T ss_pred ------ccccccCCHHHHHHHHHHHh--hCCCCCEEEEecCccCc
Confidence 01234566677777776532 22457899999999653
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.91 E-value=0.013 Score=53.44 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=26.7
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
.|+=.++.|++|||||.+.+-- +..+.. .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~-a~r~~~------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRR-IRRAKI------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH-HHHHHH------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHH-HHHHHH------CCCEEEEEEecc
Confidence 3556788999999999874432 223221 367799998873
No 111
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.78 E-value=0.058 Score=52.03 Aligned_cols=18 Identities=33% Similarity=0.163 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+++.||+|+|||....
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999997743
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.052 Score=53.56 Aligned_cols=27 Identities=15% Similarity=-0.108 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLY 165 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~ 165 (591)
.+.++++.||+|+|||++.-. ++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 456899999999999987433 334443
No 113
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.74 E-value=0.015 Score=68.65 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=69.1
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCC
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ 203 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 203 (591)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+.... .+....++|+|++|+..|..+.+.+.........
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-NPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-CCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999765 889999999999999986555555544321 1123457999999999999999888765432100
Q ss_pred eEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHH
Q 007743 204 TVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHL 239 (591)
Q Consensus 204 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l 239 (591)
. .. ........+..-..+-|+|-..+...+
T Consensus 87 ~-----~~-~~~~~~~~~~~~~~~~i~T~hsf~~~~ 116 (1232)
T 3u4q_A 87 Q-----RP-GSLHIRRQLSLLNRASISTLHSFCLQV 116 (1232)
T ss_dssp H-----ST-TCHHHHHHHHHTTTSEEECHHHHHHHH
T ss_pred c-----Cc-chHHHHHHHhccCCCeEEeHHHHHHHH
Confidence 0 00 011111222222456788888775444
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.70 E-value=0.011 Score=54.43 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
.|+=.++.+++|||||.+.+--+..... .+.+++|+.|...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-------~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-------AKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-------TTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-------CCCEEEEEEeccC
Confidence 3455678999999999874433332221 3677999999753
No 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.55 E-value=0.085 Score=54.34 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
+.-+++.+++|+|||....-- ...+.. .+.+++++. +.|.-+.+ .+..+....+..+.....+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kL--A~~l~~-----~G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKL--AYFYKK-----RGYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHH--HHHHHH-----TTCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCS----
T ss_pred CeEEEEECCCCCCHHHHHHHH--HHHHHH-----cCCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccC----
Confidence 446788899999999874432 222221 244565555 45544433 34444444443332111111
Q ss_pred HHHHHhcCCCEEEeCchHHH-HHHhcCCCCccCCceEEEEeCchhhh---ccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 217 EAERIVKGVNLLVATPGRLL-DHLQNTKGFIYKNLKCLVIDEADRIL---EANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~-~~l~~~~~~~~~~l~~lVlDEah~l~---~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
.|..+. ..+.. ......+++|+|++-++. +..+...+..+...+.. ..-+++++|+..
T Consensus 163 --------------dp~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p-d~vlLVlDa~~g 224 (433)
T 3kl4_A 163 --------------NPIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP-DDVILVIDASIG 224 (433)
T ss_dssp --------------CHHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC-SEEEEEEEGGGG
T ss_pred --------------CHHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC-cceEEEEeCccc
Confidence 122221 22222 123467899999998754 34566677777776654 566777888876
Q ss_pred hhHHHHHHh
Q 007743 293 KKVEDLARL 301 (591)
Q Consensus 293 ~~~~~l~~~ 301 (591)
......+..
T Consensus 225 q~a~~~a~~ 233 (433)
T 3kl4_A 225 QKAYDLASR 233 (433)
T ss_dssp GGGHHHHHH
T ss_pred hHHHHHHHH
Confidence 666555543
No 116
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.54 E-value=0.02 Score=63.26 Aligned_cols=71 Identities=20% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 124 FMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
.+++-|++++... +..++|.|+.|||||.+.+--+...+..... ....+|+|+.|+..|.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4799999999764 6789999999999998855444444433221 345699999999999999998887643
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.52 E-value=0.037 Score=54.95 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+..+++.||+|+|||....
T Consensus 36 ~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34689999999999997643
No 118
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.46 E-value=0.028 Score=62.50 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHh
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLK 199 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 199 (591)
..+++-|++++... ...++|.|..|||||.+..--+...+.... .....+|+|+.|+..|.++.+.+..+..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 46899999999763 568999999999999885544444443221 1335699999999999999988887653
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.12 E-value=0.034 Score=60.16 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=73.5
Q ss_pred CCcHHHHHhhccccC--CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhc
Q 007743 124 FMTQIQARAVPPLMV--GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYH 201 (591)
Q Consensus 124 ~~~~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 201 (591)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+.+- .+. ..++|.+|+.+-+..+.+.. ..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~---------~~~~vtAP~~~a~~~l~~~~----~~- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA---------GRAIVTAPAKASTDVLAQFA----GE- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS---------SCEEEECSSCCSCHHHHHHH----GG-
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH---------hCcEEECCCHHHHHHHHHHh----hC-
Confidence 579999999987775 33578999999999966544433 221 13699999998766443322 11
Q ss_pred CCeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCC
Q 007743 202 SQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKD 281 (591)
Q Consensus 202 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~ 281 (591)
.|-+..|..+... ....++||||||=.+- .+.+..++...
T Consensus 240 ------------------------~i~~~~Pd~~~~~--------~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLAS--------DEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp ------------------------GCCBCCHHHHHHS--------CCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred ------------------------CeEEeCchhhhhC--------cccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 1335567664321 2357899999999763 45666666533
Q ss_pred ccEEEEeccCch
Q 007743 282 RQTALFSATQTK 293 (591)
Q Consensus 282 ~q~ll~SAT~~~ 293 (591)
..++||.|...
T Consensus 280 -~~v~~~tTv~G 290 (671)
T 2zpa_A 280 -PRTLLTTTVQG 290 (671)
T ss_dssp -SEEEEEEEBSS
T ss_pred -CeEEEEecCCc
Confidence 24777777543
No 120
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.11 E-value=0.13 Score=49.80 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHHCCC---CCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGF---QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~---~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|+++.-.+...+.|...-. ..+..++.. .+..++.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKV---GIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH---CCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCCeEEEECCCCCcHHHHH
Confidence 4568888766666666643210 011111111 1234678999999999999764
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.10 E-value=0.026 Score=52.57 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=27.6
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
.|+=.++.|++|||||...+--+.... ..+.+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCeEEEEeecCC
Confidence 356678899999999987443332222 24677899988653
No 122
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.07 E-value=0.037 Score=51.93 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.03 E-value=0.16 Score=50.30 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEE
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTAL 286 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll 286 (591)
....+|||||+|.+........+..++...+. ..++++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~-~~~iI~ 141 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSS-NCSIII 141 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGG-GCEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCC-CcEEEE
Confidence 36789999999998622334455555555443 444444
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.81 E-value=0.024 Score=52.19 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=26.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
.|.=.++.+++|||||...+- .+..... .+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr-~~~r~~~------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIR-RLRRGIY------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHH------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHH-HHHHHHH------cCCceEEEEeccC
Confidence 355578999999999976332 3333322 3566899998643
No 125
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.72 E-value=0.3 Score=50.32 Aligned_cols=131 Identities=21% Similarity=0.184 Sum_probs=66.9
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchH
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRG 216 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 216 (591)
..-+++.+++|+|||....-- ...+. ..|.+++++. |.|.-+.+ .+..+....+..+.....+
T Consensus 100 p~vIlivG~~G~GKTTt~~kL--A~~l~-----~~G~kVllv~~D~~R~aa~e---qL~~~~~~~gvpv~~~~~~----- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKL--ARYFQ-----KRGYKVGVVCSDTWRPGAYH---QLRQLLDRYHIEVFGNPQE----- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHH--HHHHH-----TTTCCEEEEECCCSSTHHHH---HHHHHHGGGTCEEECCTTC-----
T ss_pred CeEEEEECcCCCCHHHHHHHH--HHHHH-----HCCCeEEEEeCCCcchhHHH---HHHHHHHhcCCcEEecCCC-----
Confidence 345789999999999875422 22222 1355566665 56665543 4445555444443221111
Q ss_pred HHHHHhcCCCEEEeCchHHH-HHHhcCCCCccCCceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchh
Q 007743 217 EAERIVKGVNLLVATPGRLL-DHLQNTKGFIYKNLKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKK 294 (591)
Q Consensus 217 ~~~~l~~~~~Iiv~Tp~~L~-~~l~~~~~~~~~~l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~ 294 (591)
..|..+. +.+... ....++++|||.+=++.. ......+..+...... ..-+++++||....
T Consensus 165 -------------~dp~~i~~~al~~a---~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~p-d~vlLVvDA~~gq~ 227 (443)
T 3dm5_A 165 -------------KDAIKLAKEGVDYF---KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHP-HEVILVIDGTIGQQ 227 (443)
T ss_dssp -------------CCHHHHHHHHHHHH---HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC-SEEEEEEEGGGGGG
T ss_pred -------------CCHHHHHHHHHHHH---HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcC-ceEEEEEeCCCchh
Confidence 1122221 112111 112367888888865432 2333445555554443 55667778877655
Q ss_pred HHHHHHh
Q 007743 295 VEDLARL 301 (591)
Q Consensus 295 ~~~l~~~ 301 (591)
....+..
T Consensus 228 a~~~a~~ 234 (443)
T 3dm5_A 228 AYNQALA 234 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.55 E-value=0.14 Score=53.18 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=25.1
Q ss_pred CceEEEEeCchhhhcc-ccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 249 NLKCLVIDEADRILEA-NFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~-~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
...+|+|||+|.+... .....+..++..+.....++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4569999999998753 23444555555443334555554433
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.39 Score=43.86 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
..-.+|||||+|.+... ....+..++...+. ...+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~-~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSK-SCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTT-TEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCC-CCeEEEEe
Confidence 45679999999988643 23455556665443 44444443
No 128
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.30 E-value=0.15 Score=45.42 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
...+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999764
No 129
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.29 E-value=0.37 Score=43.58 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=70.5
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH-HHHHHHHHHHHHHhhcCCeEEEEEcCcc---ch
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE-LAIQTHAVAKDLLKYHSQTVGLVIGGSA---RR 215 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre-La~q~~~~~~~~~~~~~~~~~~~~gg~~---~~ 215 (591)
-.+++..++|.|||.+++--++..+. .|.+|+|+.-.+. .-.--.+.+..+ ++.+ ...|.. ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g-------~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~--~~~g~gf~~~~ 95 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG-------HGKNVGVVQFIKGTWPNGERNLLEPH----GVEF--QVMATGFTWET 95 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH-------TTCCEEEEESSCCSSCCHHHHHHGGG----TCEE--EECCTTCCCCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEEeeCCCCCccHHHHHHhC----CcEE--EEcccccccCC
Confidence 47889999999999998766666653 4677888843221 000000112222 2221 111110 00
Q ss_pred HHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhcccc--HHHHHHHHHhCCCCCccEEEEeccCch
Q 007743 216 GEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANF--EEEMRQIMKLLPKKDRQTALFSATQTK 293 (591)
Q Consensus 216 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f--~~~~~~i~~~l~~~~~q~ll~SAT~~~ 293 (591)
........ .-...+...... +.-..+++||+||+-..+..++ .+.+..++...|. ..-+|+.+--.|+
T Consensus 96 ~~~~~~~~-------~a~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~-~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 96 QNREADTA-------ACMAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG-HQTVIITGRGCHR 165 (196)
T ss_dssp GGHHHHHH-------HHHHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT-TCEEEEECSSCCH
T ss_pred CCcHHHHH-------HHHHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC-CCEEEEECCCCcH
Confidence 00000000 001122222221 2225689999999987655443 3566667776665 5566666666676
Q ss_pred hHHHHHH
Q 007743 294 KVEDLAR 300 (591)
Q Consensus 294 ~~~~l~~ 300 (591)
.+.+++.
T Consensus 166 ~l~e~AD 172 (196)
T 1g5t_A 166 DILDLAD 172 (196)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 6665554
No 130
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.23 E-value=0.11 Score=46.34 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+..+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999764
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.12 E-value=0.041 Score=49.89 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT 183 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 183 (591)
|+=.++.|++|||||.-. ++.+.+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L----l~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL----MRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH----HHHHHHHHH---TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH----HHHHHHHHH---cCCeEEEEccc
Confidence 556789999999999652 233322211 25678999886
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.93 E-value=0.17 Score=51.08 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4568999999999999764
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.87 E-value=0.14 Score=50.18 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+.++++.||+|+|||....
T Consensus 66 ~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44579999999999997753
No 134
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.86 E-value=0.41 Score=47.30 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=30.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhcccc-----CCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLM-----VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il-----~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|++++--....+.|...= ..|.+ .|.+. ..+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 457888876666666664321 01111 11221 2367999999999999764
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.79 E-value=0.16 Score=50.27 Aligned_cols=51 Identities=14% Similarity=0.222 Sum_probs=31.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccc-----cCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPL-----MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i-----l~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|+++.-.....+.|...=. .|.. .|.+ ...+.+++.||+|+|||+..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34579998777777777654311 1111 1211 12357999999999999764
No 136
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.77 E-value=0.2 Score=55.85 Aligned_cols=91 Identities=7% Similarity=0.069 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHh-cCCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 333 SAKRFILLYSFLKR-NLSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 333 ~~~k~~~l~~~l~~-~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
+.+...++..++.. ..+.+++|.++|+.-+..++..+... ++.+..+||+++..+|...+..+.+|...|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 34444444443332 23578999999998888877766654 78999999999999999999999999999999996
Q ss_pred c-cccCCCCCCCcEEEE
Q 007743 408 V-AARGLDIPAVDWIVQ 423 (591)
Q Consensus 408 ~-~~~GiDip~v~~VI~ 423 (591)
. +...+.+.++++||.
T Consensus 480 ~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVII 496 (780)
T ss_dssp THHHHCCCCSCCCEEEE
T ss_pred HHHhhhhhccCCceEEe
Confidence 4 445678889998884
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.52 Score=46.99 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=26.7
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
.+.+++|+||+|. ++......+..++...+. ...+++.|..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~-~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSK-NIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT-TEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC-CCEEEEEeCC
Confidence 4578999999998 454445667777777654 4455554443
No 138
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.58 E-value=0.13 Score=46.95 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
+.+++.||+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999764
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.57 E-value=0.3 Score=45.82 Aligned_cols=52 Identities=21% Similarity=0.103 Sum_probs=30.8
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
+..|.-+++.|++|+|||...+--+...+ . .+..++++.-. +-..++.+.+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-K------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-H------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-h------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 44677889999999999976433333222 2 24456776633 33445444443
No 140
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.46 E-value=0.55 Score=46.52 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
..+++.||+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999764
No 141
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.38 E-value=0.21 Score=50.56 Aligned_cols=18 Identities=33% Similarity=0.224 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999764
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.35 E-value=1.8 Score=40.76 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 102 TSFDSLGLSQHTFRAIQDMG--FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+|+++.-.+...+.|.++- +..+..+.... +...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHH
Confidence 45777765555665554320 11111111111 123467999999999999764
No 143
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.21 E-value=0.18 Score=50.20 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=22.6
Q ss_pred cHHHHHhhcccc----CCC---cEEEEccCCCCchHHhH
Q 007743 126 TQIQARAVPPLM----VGK---DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 126 ~~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~~ 157 (591)
.|+|..++..+. +|+ -+++.||.|+|||....
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 466666655443 443 38999999999997754
No 144
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.17 E-value=0.51 Score=48.97 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=31.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHH-hhc-cccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQAR-AVP-PLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~-~i~-~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|+++.-.....+.|...-. .|.+.. .+. .....+.+++.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34678988766666666653210 111100 000 1123468999999999999764
No 145
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.04 E-value=0.21 Score=48.95 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=30.7
Q ss_pred ccccccCCCCHHHHHHHHHCC---CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMG---FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|+++.-.....+.|...- ...+..+... .+..++.+++.||+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHHH
Confidence 457888865566655554320 0011111111 1234678999999999999764
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.89 E-value=0.19 Score=50.90 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=14.4
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999764
No 147
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.70 E-value=0.39 Score=48.24 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
.+.+++.||+|+|||+..-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999997743
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.61 E-value=0.3 Score=49.76 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=29.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHH-HHhhcc-ccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQ-ARAVPP-LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~-il~g~dvlv~a~TGsGKTl~~ 156 (591)
...|+++.-.....+.|...-. .+.. ...+.. ....+.+++.||+|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVI---LPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHH---HhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4568888655555555543210 0000 000011 123578999999999999764
No 149
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.42 E-value=0.43 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.8
Q ss_pred ccCCCcEEEEccCCCCchHHhH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~ 157 (591)
+..|.-+++.||+|+|||....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHH
Confidence 4567788999999999996643
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.15 E-value=1 Score=46.75 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=57.1
Q ss_pred ccccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCcc
Q 007743 134 PPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSA 213 (591)
Q Consensus 134 ~~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 213 (591)
--+..|.-+++.|++|+|||...+--+...... .+..+++++.--. ..|+...+... ..+.....+..|.-
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s~E~s-~~~l~~r~~~~--~~~~~~~~l~~g~l 268 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFSLEMS-AQQLVMRMLCA--EGNINAQNLRTGKL 268 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEESSSC-HHHHHHHHHHH--HHTCCHHHHHTSCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEECCCC-HHHHHHHHHHH--HcCCCHHHHhcCCC
Confidence 345567788999999999997644333332221 2445777764221 23433333211 11111000111111
Q ss_pred chHHHHHH------hcCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 214 RRGEAERI------VKGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 214 ~~~~~~~l------~~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
...++..+ ....++.+. |++.+...+.... .-..+++||||+.+.+..
T Consensus 269 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~--~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 269 TPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK--QESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp CHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH--TTTCCCEEEEECGGGSCC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEccHHHhcc
Confidence 22222221 123456654 3344444333211 113578999999998874
No 151
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.82 E-value=1.3 Score=45.77 Aligned_cols=118 Identities=18% Similarity=0.071 Sum_probs=56.7
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
-+..|.-+++.|++|+|||...+--+.+.... .+..+++++.- .-..|+...+.... .++....+..|.-.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~--~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSE--ARIDMNRVRLGQLT 266 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHH--TTCCTTTCCGGGCC
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhCCCCC
Confidence 34456778999999999996543333332221 24557777642 22334443332211 11111111112222
Q ss_pred hHHHHHH------hcCCCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhhc
Q 007743 215 RGEAERI------VKGVNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE 263 (591)
Q Consensus 215 ~~~~~~l------~~~~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~ 263 (591)
..++..+ .....+.+. |+..+...+.... .-..+++||||..+.|..
T Consensus 267 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~--~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLV--SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH--HHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEcChhhcCC
Confidence 2333222 123456553 3344443333211 013578999999998864
No 152
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.42 E-value=0.23 Score=46.79 Aligned_cols=51 Identities=22% Similarity=0.077 Sum_probs=29.2
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAK 195 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 195 (591)
.|.-+++.|++|+|||...+--+.+.+.+ .+..+++++-. +-..++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh------cCCCceeeccc-CCHHHHHHHHH
Confidence 45678999999999996543323333322 23456676632 22444444443
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.37 E-value=1.8 Score=43.27 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999764
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.26 E-value=0.82 Score=45.41 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
....+|+|||+|.+.... ...+..++...+. ...+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~-~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSG-VTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTT-TEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCC-CceEEEEe
Confidence 345799999999886532 3455566666554 44445443
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.12 E-value=2.6 Score=38.71 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 156
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.77 E-value=0.89 Score=46.42 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=64.4
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHH---cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCccc----cCCCCCCCc
Q 007743 347 NLSKKVMVFFSSCNSVKFHSELLRY---IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA----RGLDIPAVD 419 (591)
Q Consensus 347 ~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~~----~GiDip~v~ 419 (591)
..+.++||.+|++.-+..++..+.. .++.+..+||+.+..++...+..+..|...|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 578999999999999999999999999999999997321 125566788
Q ss_pred EEEE
Q 007743 420 WIVQ 423 (591)
Q Consensus 420 ~VI~ 423 (591)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.38 E-value=0.57 Score=47.00 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=29.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHH-Hhhc-cccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQA-RAVP-PLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~-~~i~-~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|+++.-.....+.|...=. .|... ..+. .....+.+++.||+|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 3568887655555555543210 11110 0000 1123568999999999999764
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.28 E-value=1.4 Score=43.09 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=25.1
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
....+|||||+|.+.... ...+..++...+. ...+++ +++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~-~~~~i~-~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSS-NVRFIL-SCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTT-TEEEEE-EESCG
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCC-CCeEEE-EeCCc
Confidence 456799999999886432 3445555665443 444444 44433
No 159
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.25 E-value=0.44 Score=48.93 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=32.1
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQD---MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~---~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|++.+=-....+.|.+ +-+..|--++...++ -.+-+++.||+|+|||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHHH
Confidence 34679998644455554432 112223333333332 2467999999999999764
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.96 E-value=1.3 Score=46.49 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
..+.+++.||+|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999864
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.62 E-value=0.46 Score=50.39 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=25.7
Q ss_pred CCceEEEEeCchhhhcc--ccHHHHHHHHHhCCCCCccEEEEeccC
Q 007743 248 KNLKCLVIDEADRILEA--NFEEEMRQIMKLLPKKDRQTALFSATQ 291 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~--~f~~~~~~i~~~l~~~~~q~ll~SAT~ 291 (591)
..-.+|||||+|.+... +....+..++... ...+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~---~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT---STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC---SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc---CCCEEEEEcCC
Confidence 34579999999998752 2334455555443 44577777664
No 162
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.21 E-value=0.32 Score=45.78 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCceEEEEeCchhhhc-----cccHHHHHHHHHhCCCCCccEEEEeccC
Q 007743 248 KNLKCLVIDEADRILE-----ANFEEEMRQIMKLLPKKDRQTALFSATQ 291 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~-----~~f~~~~~~i~~~l~~~~~q~ll~SAT~ 291 (591)
.+.++||+||.-.+++ ......+..++..+..... +++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~-tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGV-TTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCC-EEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCC-eEEEEECC
Confidence 4567999999998876 4455556677766654233 44444433
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.17 E-value=0.82 Score=41.87 Aligned_cols=23 Identities=26% Similarity=0.050 Sum_probs=18.2
Q ss_pred ccCCCcEEEEccCCCCchHHhHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~l 158 (591)
+..|.-+++.|++|+|||.....
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHH
Confidence 44677789999999999976443
No 164
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.03 E-value=0.64 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=18.1
Q ss_pred ccCCCcEEEEccCCCCchHHhH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~ 157 (591)
+..|.-+++.|++|+|||....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 4567888999999999997644
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.89 E-value=0.61 Score=48.34 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999997643
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.61 E-value=1.1 Score=44.47 Aligned_cols=117 Identities=20% Similarity=0.123 Sum_probs=57.2
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
-+..|.=+++.|++|+|||...+--+.+. .. .+..++|++.- .-..|+...+....... ....+..|.-.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~-a~------~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v--~~~~l~~g~Ls 111 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA-LN------DDRGVAVFSLE-MSAEQLALRALSDLTSI--NMHDLESGRLD 111 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHH-HH------TTCEEEEEESS-SCHHHHHHHHHHHHHCC--CHHHHHHTCCC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HH------cCCeEEEEeCC-CCHHHHHHHHHHHhhCC--CHHHHhcCCCC
Confidence 34566778999999999997644333332 22 35667777642 22344444433221111 11111112222
Q ss_pred hHHHHHHh------cCCCEEE-eCc----hHHHHHHhcCCCCccC-CceEEEEeCchhhhc
Q 007743 215 RGEAERIV------KGVNLLV-ATP----GRLLDHLQNTKGFIYK-NLKCLVIDEADRILE 263 (591)
Q Consensus 215 ~~~~~~l~------~~~~Iiv-~Tp----~~L~~~l~~~~~~~~~-~l~~lVlDEah~l~~ 263 (591)
..++..+. ...++.| .+| ..+...++... .-. .+++||||-.+.|..
T Consensus 112 ~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~--~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 112 DDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK--SQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH--HHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH--HhcCCCCEEEEechHHhcC
Confidence 22332221 2245555 344 33433333211 112 589999999997754
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.50 E-value=1.9 Score=43.08 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
....+|||||+|.+.... ...+..++...+. .. +++++++
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~-~~-~~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPE-HV-KFLLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCS-SE-EEEEEES
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCC-ce-EEEEEeC
Confidence 456799999999886433 2344455554433 33 3444444
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.48 E-value=1.7 Score=40.45 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=18.6
Q ss_pred ccCCCcEEEEccCCCCchHHhHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~l 158 (591)
+-.|.-+++.+|+|+|||.....
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 44677899999999999977543
No 169
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.44 E-value=3.9 Score=37.30 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=53.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI-----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIPA 417 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip~ 417 (591)
..++||.++++.-+..+++.+... ++.+..++|+.+...+... +..+...|+|+|.-. ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999888887765 6889999999987665443 445677999999621 23456667
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777663
No 170
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.34 E-value=1.6 Score=50.87 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=64.8
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC-ccccCCCCCCCcEE
Q 007743 347 NLSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD-VAARGLDIPAVDWI 421 (591)
Q Consensus 347 ~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~-~~~~GiDip~v~~V 421 (591)
..+.+++|.++|..-+.+.+..+... ++.+..+++..+...+..++..+..|...|+|+|. .+...+.+.++++|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 34678999999999888888777643 67889999999999999999999999999999994 55566888888888
Q ss_pred EE
Q 007743 422 VQ 423 (591)
Q Consensus 422 I~ 423 (591)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 171
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.11 E-value=4.3 Score=37.72 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=52.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----cc-cCCCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AA-RGLDIPAV 418 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-~GiDip~v 418 (591)
..++||.++++.-+..+...+... ++.+..++|+.+.......+.. ...|+|+|.- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 567999999999888877766554 8899999999987766555442 4789999952 22 34577788
Q ss_pred cEEEE
Q 007743 419 DWIVQ 423 (591)
Q Consensus 419 ~~VI~ 423 (591)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.02 E-value=0.93 Score=44.46 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999764
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.85 E-value=1.7 Score=42.19 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=27.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..|+++--.+...+.|...=-. -....+++.||+|+|||...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHH
Confidence 35677766566666665533100 01125999999999999764
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.76 E-value=1.1 Score=43.77 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=23.0
Q ss_pred CceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 249 NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 249 ~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
...+|||||+|.+.... ...+..++...+. ...+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~-~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSN-STRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTT-TEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCC-CceEEEEe
Confidence 36799999999886532 2344555555443 44455444
No 175
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.68 E-value=1 Score=48.04 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|..+++.||+|+|||+..
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999764
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.56 E-value=1.7 Score=42.56 Aligned_cols=54 Identities=22% Similarity=-0.025 Sum_probs=31.8
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHH
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKD 196 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 196 (591)
-+..|.=+++.|++|+|||...+--+.+.. . .+..+++++.- .-..|+...+..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMS-D------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHH-T------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-H------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 345677799999999999965433333322 1 23567777643 334444444443
No 177
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.53 E-value=1.1 Score=45.51 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.6
Q ss_pred CCcEEE--EccCCCCchHHh
Q 007743 139 GKDVLG--AARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv--~a~TGsGKTl~~ 156 (591)
+..+++ .|+.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 346788 899999999764
No 178
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.32 E-value=3.3 Score=38.82 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----c--ccCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----A--ARGLDIP 416 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~--~~GiDip 416 (591)
...++||.++++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3567999999999988888777665 78899999998866544333 246789999952 1 1456777
Q ss_pred CCcEEEE
Q 007743 417 AVDWIVQ 423 (591)
Q Consensus 417 ~v~~VI~ 423 (591)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7887764
No 179
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.18 E-value=0.65 Score=48.00 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.8
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAI 188 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~ 188 (591)
....++++.|+||||||... -+++..+.. .+..++|+=|..++..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~-~~li~~~~~------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLL-RELAYTGLL------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHH-HHHHHHHHH------TTCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHHH-HHHHHHHHH------CCCcEEEEeCCCchhH
Confidence 35678999999999999874 334444443 3567888889988853
No 180
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.09 E-value=4.7 Score=34.87 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=51.5
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH---HHh-cCCCEEEeCchHHHHHHhcCCCCccCC
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE---RIV-KGVNLLVATPGRLLDHLQNTKGFIYKN 249 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~ 249 (591)
+.++||.++++.-+..+...+... +..+..++|+.+...... .+. ...+|+|+|. .+. .++++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhc
Confidence 457999999999999888877653 677888888876543322 222 3478999993 222 3467788
Q ss_pred ceEEEEeCc
Q 007743 250 LKCLVIDEA 258 (591)
Q Consensus 250 l~~lVlDEa 258 (591)
+++||.-..
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888886443
No 181
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.08 E-value=3.8 Score=40.11 Aligned_cols=21 Identities=29% Similarity=0.039 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 007743 137 MVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~ 157 (591)
..|.-+++.|++|+|||...+
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 345678999999999997643
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.93 E-value=1.9 Score=47.87 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=33.6
Q ss_pred CcccccccCCCCHHHHHHHHHCCC---CCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 99 MSTTSFDSLGLSQHTFRAIQDMGF---QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 99 ~~~~~f~~l~l~~~l~~~l~~~~~---~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+...|++++.-....+.|.+.=. ..+..++... +...+.+++.||.|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 345679999887888887765321 1111111100 112357999999999999763
No 183
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.63 E-value=5.4 Score=38.56 Aligned_cols=20 Identities=25% Similarity=0.056 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++-+.+.+++|+|||....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45667788999999997643
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.15 E-value=3.1 Score=39.74 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=20.4
Q ss_pred ccccCCCcEEEEccCCCCchHHhHHH
Q 007743 134 PPLMVGKDVLGAARTGSGKTLAFLIP 159 (591)
Q Consensus 134 ~~il~g~dvlv~a~TGsGKTl~~~lp 159 (591)
+-+..|.-+++.||+|+|||.....-
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHH
Confidence 34567888999999999999775443
No 185
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=85.05 E-value=9 Score=34.18 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=51.1
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH---HHh-cCCCEEEeCchHHHHHHhcCCCCccCC
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE---RIV-KGVNLLVATPGRLLDHLQNTKGFIYKN 249 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~ 249 (591)
+.++||.++++.-+..+...+... +..+..+.|+........ .+. ...+|+|+|. .+.. ++++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~--Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK--GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT--TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc--CCCccc
Confidence 446999999999999988877654 677888888876543322 222 3579999993 2322 367788
Q ss_pred ceEEEEeC
Q 007743 250 LKCLVIDE 257 (591)
Q Consensus 250 l~~lVlDE 257 (591)
+++||.=+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 186
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.89 E-value=1.1 Score=54.55 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=29.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
-.++.+++.+|+|+|||....-.+.+.. ..|.+++++..--.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~-------~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-------REGKTCAFIDAEHA 1466 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH-------TTTCCEEEECTTSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-------HcCCcEEEEEcccc
Confidence 3578999999999999987654443332 24667888776533
No 187
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=84.57 E-value=2.8 Score=40.82 Aligned_cols=42 Identities=7% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
...+++||||||.|.... ...+...+...|. .. ++++.++-+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~-~t-~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPE-YA-VIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCT-TE-EEEEEESCG
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCC-Ce-EEEEEECCh
Confidence 467899999999987533 2345555554442 33 344444443
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.38 E-value=0.48 Score=40.56 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=17.6
Q ss_pred ccCCCcEEEEccCCCCchHHh
Q 007743 136 LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~ 156 (591)
...+.++++.||+|+|||+.+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346678999999999999774
No 189
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.31 E-value=0.42 Score=40.84 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=16.8
Q ss_pred ccCCCcEEEEccCCCCchHH
Q 007743 136 LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~ 155 (591)
+..+.++++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567899999999999965
No 190
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=84.11 E-value=2.5 Score=49.06 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=62.7
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHH---cCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc-----ccCCCCCCC
Q 007743 347 NLSKKVMVFFSSCNSVKFHSELLRY---IQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA-----ARGLDIPAV 418 (591)
Q Consensus 347 ~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~-----~~GiDip~v 418 (591)
..+.++||.+|++.-+..++..+.. .++.+..+||+++..+|...+..+..|...|||+|.-. .+ +++.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3467899999999999999999988 46789999999999999999999999999999999621 12 445567
Q ss_pred cEEEE
Q 007743 419 DWIVQ 423 (591)
Q Consensus 419 ~~VI~ 423 (591)
++||.
T Consensus 198 ~~lVi 202 (1104)
T 4ddu_A 198 DFVFV 202 (1104)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77664
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.06 E-value=1.7 Score=49.03 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
..++++.||+|+|||...-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997643
No 192
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.97 E-value=27 Score=33.96 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=29.6
Q ss_pred chHHHHHHhcCCCCccCCceEEEEeCchhhhc---cccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 232 PGRLLDHLQNTKGFIYKNLKCLVIDEADRILE---ANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 232 p~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~---~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
...+++.+..... .--+|||||+|.+.. ..+...+..+....+ ...++ ++++
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i-~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK--RIKFI-MSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT--TEEEE-EEES
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC--CeEEE-EEcC
Confidence 3445555543210 134899999999864 456666666666543 34444 4443
No 193
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.82 E-value=4.4 Score=35.52 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=50.9
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++++..+..++..+.. .+..+..++|+.+....... +. ...+|+|+|.- + ..++++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~--~~Gid~~ 101 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C--ARGIDVK 101 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C--CTTTCCT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h--hcCCCcc
Confidence 356899999999999988877664 36778888888765443322 22 34799999942 2 2347778
Q ss_pred CceEEEE
Q 007743 249 NLKCLVI 255 (591)
Q Consensus 249 ~l~~lVl 255 (591)
.+.+||.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 8888885
No 194
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.76 E-value=2 Score=39.71 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc-----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI-----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIP 416 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip 416 (591)
...++||.++++.-+..+++.+... ++.+..++|+.+...+...+ ....|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999988888775 57788999999876654433 257899999631 1345556
Q ss_pred CCcEEEE
Q 007743 417 AVDWIVQ 423 (591)
Q Consensus 417 ~v~~VI~ 423 (591)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6666653
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.44 E-value=13 Score=36.14 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
++-+++.+++|+|||....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4557789999999997643
No 196
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.33 E-value=1.9 Score=43.19 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=26.3
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCC
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPT 183 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 183 (591)
+..|.-+++.+++|+|||...+ .++..+.. .+..++++..-
T Consensus 71 l~~G~li~I~G~pGsGKTtlal-~la~~~~~------~g~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLAL-AIVAQAQK------AGGTCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHH-HHHHHHHH------TTCCEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHH-HHHHHHHH------CCCeEEEEECC
Confidence 4467788999999999996543 33333332 24457777643
No 197
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.93 E-value=3.6 Score=44.25 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=54.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHh--hcCCccEEEEeC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDF--CKAEKGILLCTD 407 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F--~~g~~~vLvaT~ 407 (591)
.+.+||.+|++.-+......|...++.+..++|+++..++..++..+ ..+...||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 57899999999999999999999999999999999999998888888 468899999997
No 198
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=82.52 E-value=0.97 Score=40.14 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=71.1
Q ss_pred CcHHHHHhhccccCCC--cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcC
Q 007743 125 MTQIQARAVPPLMVGK--DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHS 202 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~ 202 (591)
..+-|..++..++... -.++.++-|++||...+--++.. .+ ..|..+.+|+|+..-+....+...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~-a~-----~~Gr~V~vLAp~~~s~~~l~~~~~------- 101 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMM-AR-----EQGREVQIIAADRRSQMNMKQDER------- 101 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHH-HH-----HTTCCEEEECSTTHHHHHHSCTTT-------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHH-HH-----hcCeEEEEEcCchHHHHHHHhhcC-------
Confidence 3567889998887543 46788999999998854333322 22 257889999999876554222111
Q ss_pred CeEEEEEcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHhCCCCCc
Q 007743 203 QTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDR 282 (591)
Q Consensus 203 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~ 282 (591)
.. .+++ |-.. ++.. ...+..=+++|||||-.|.- .++..++......+.
T Consensus 102 l~--------------------~~t~--t~~~---ll~~--~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~na 150 (189)
T 2l8b_A 102 LS--------------------GELI--TGRR---QLLE--GMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNV 150 (189)
T ss_dssp CS--------------------SCSS--STTT---TTTT--SCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTC
T ss_pred cC--------------------ccee--ehhh---hhcC--CCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCC
Confidence 00 0110 1111 1111 12234445899999998864 345555554444467
Q ss_pred cEEEEecc
Q 007743 283 QTALFSAT 290 (591)
Q Consensus 283 q~ll~SAT 290 (591)
|+|++--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 77776443
No 199
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.51 E-value=1.6 Score=44.82 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=36.3
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDM---GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|++++--+...+.|.+. -+.+|.-++...+++ .+.+++.||+|+|||+..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~---prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA---PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC---CCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCeeEEECcCCCCHHHHH
Confidence 446799998777776666532 223344445444432 478999999999999764
No 200
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.43 E-value=4.8 Score=37.15 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=48.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcC----CCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-c----cc--CCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQ----VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-A----AR--GLDIP 416 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~----~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-~----~~--GiDip 416 (591)
.+.++||.++++.-+..+...+...+ +.+..++|+.+.......+ +...|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 36689999999999998888887753 7788899988765544333 46789999952 1 11 35555
Q ss_pred CCcEEEE
Q 007743 417 AVDWIVQ 423 (591)
Q Consensus 417 ~v~~VI~ 423 (591)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6666553
No 201
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=82.43 E-value=7.3 Score=33.69 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=50.8
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++++.-+..+...+.. .+..+..++|+.+....... +. ....|+|+|. .+. .++++.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~ 97 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQ 97 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcc
Confidence 346799999999999888877765 36678888888765433222 22 3479999993 222 236777
Q ss_pred CceEEEEeC
Q 007743 249 NLKCLVIDE 257 (591)
Q Consensus 249 ~l~~lVlDE 257 (591)
.+.+||.-.
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888887644
No 202
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.86 E-value=7.7 Score=38.13 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=31.0
Q ss_pred ceEEEEeCchhhhc-cccHHHHHHHHHhCCCCCccEEEEeccCchhHHHHHHh
Q 007743 250 LKCLVIDEADRILE-ANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARL 301 (591)
Q Consensus 250 l~~lVlDEah~l~~-~~f~~~~~~i~~~l~~~~~q~ll~SAT~~~~~~~l~~~ 301 (591)
.+++++|.+.++.. ......+..+...+.. ...++++.++....+...++.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~-de~llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKP-NLVIFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCC-SEEEEEEEGGGTTHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcC-CCCEEEEecHHHHHHHHHHHH
Confidence 45677888775432 3344555555555543 566778888877666555544
No 203
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=81.77 E-value=7.6 Score=35.30 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=50.7
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccCC
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYKN 249 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~ 249 (591)
+.++||.+|++.-+..++..+... +..+..++|+.+....... +. ...+|+|+|. .+. .++++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 557999999999999888877654 6778888888765543322 22 3478999994 222 2477788
Q ss_pred ceEEEE
Q 007743 250 LKCLVI 255 (591)
Q Consensus 250 l~~lVl 255 (591)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888774
No 204
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.69 E-value=8 Score=34.59 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=51.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc--CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----c-ccCCCCCCCc
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----A-ARGLDIPAVD 419 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~-~~GiDip~v~ 419 (591)
...++||.++++.-+..+.+.+... .+.+..++|+.+.......+. ....|+|+|.- + ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999988876 467888999887655443332 25789999952 1 2345667777
Q ss_pred EEEE
Q 007743 420 WIVQ 423 (591)
Q Consensus 420 ~VI~ 423 (591)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 205
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.14 E-value=4.3 Score=42.88 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=55.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
.+.+||.++++.-+......|...++.+..+|++.+..++..+...+..|...||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999999999999999999999999999999999999999995
No 206
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=81.04 E-value=6.5 Score=42.32 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.4
Q ss_pred cccCCCcEEEEccCCCCchHHh
Q 007743 135 PLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..|..+++.+|+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3457789999999999999774
No 207
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.96 E-value=2 Score=42.89 Aligned_cols=44 Identities=23% Similarity=0.110 Sum_probs=27.7
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
+-.|.-+++.+|+|+|||... +.++..+.. .+..++++..-..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLa-l~la~~~~~------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLA-LHAIAEAQK------MGGVAAFIDAEHAL 101 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHH-HHHHHHHHH------TTCCEEEEESSCCC
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHHHHHh------cCCeEEEEeccccc
Confidence 445677899999999999654 333333322 24457777654433
No 208
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.38 E-value=5.9 Score=36.64 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhc----CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe
Q 007743 335 KRFILLYSFLKRN----LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT 406 (591)
Q Consensus 335 ~k~~~l~~~l~~~----~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT 406 (591)
+.+.++..++... ...++||.++++.-+..++..+... ++.+..++|+.+... ....+..+...|+|+|
T Consensus 80 KT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~T 156 (237)
T 3bor_A 80 KTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGT 156 (237)
T ss_dssp HHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEEC
Confidence 3334444444432 3568999999999999888888765 466777888765433 2334456678999999
Q ss_pred C-----cccc-CCCCCCCcEEEE
Q 007743 407 D-----VAAR-GLDIPAVDWIVQ 423 (591)
Q Consensus 407 ~-----~~~~-GiDip~v~~VI~ 423 (591)
. .+.+ .+++..+++||.
T Consensus 157 p~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 157 PGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp HHHHHHHHHTTSSCSTTCCEEEE
T ss_pred HHHHHHHHHhCCcCcccCcEEEE
Confidence 4 2223 356666777664
No 209
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.78 E-value=9.7 Score=37.92 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI-----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIPA 417 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip~ 417 (591)
..++||.|+++.-+..++..+... ++.+..++|+.+....... +..+...|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988888765 7889999999987665443 445778999999521 23467788
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888874
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.48 E-value=5 Score=44.53 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+.++++.||+|+|||...-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 45689999999999997643
No 211
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=79.09 E-value=12 Score=32.67 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++++.-+..++..+... +..+..++|+......... +. ...+|+|+|.- + ..++++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~--~~Gldi~ 98 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F--GRGMDIE 98 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C--STTCCGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h--hcCcchh
Confidence 3457999999999999888777653 6778888888765443222 22 35799999942 1 2346777
Q ss_pred CceEEEEeC
Q 007743 249 NLKCLVIDE 257 (591)
Q Consensus 249 ~l~~lVlDE 257 (591)
.+.+||.-.
T Consensus 99 ~~~~Vi~~d 107 (172)
T 1t5i_A 99 RVNIAFNYD 107 (172)
T ss_dssp GCSEEEESS
T ss_pred hCCEEEEEC
Confidence 788888644
No 212
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=78.99 E-value=20 Score=36.58 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=26.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQ 189 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q 189 (591)
.++-+++.+++|+|||..... +..++.. .+.+++++. +.+..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~--LA~~l~~-----~g~~Vllvd~D~~r~aa~~ 143 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK--LALYYKG-----KGRRPLLVAADTQRPAARE 143 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH--HHHHHHT-----TTCCEEEEECCSSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH--HHHHHHH-----cCCeEEEeeccccCchhHH
Confidence 445677889999999977432 2233321 244555554 45555543
No 213
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.90 E-value=6.4 Score=36.01 Aligned_cols=72 Identities=8% Similarity=0.124 Sum_probs=48.1
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc---CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc------cccCCCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV------AARGLDIPAV 418 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~------~~~GiDip~v 418 (591)
...++||.++++.-+..++..+... ++.+..++|+.+...+...+ . ....|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4667999999999999999888875 67788889887765443332 2 34789999952 2235667777
Q ss_pred cEEEE
Q 007743 419 DWIVQ 423 (591)
Q Consensus 419 ~~VI~ 423 (591)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77764
No 214
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.62 E-value=5.3 Score=35.79 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=50.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----cc-cCCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI-----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AA-RGLDIPA 417 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-~GiDip~ 417 (591)
..++||.++++.-+..+++.+... +..+..++|+.+....... + .+...|+|+|.- +. ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888877664 5778889999886554322 2 346789999962 12 2345667
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.99 E-value=5.8 Score=40.19 Aligned_cols=20 Identities=15% Similarity=-0.024 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.|.-+.+.+|+|+|||....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHH
Confidence 34568899999999997644
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.82 E-value=1.2 Score=49.73 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER 220 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 220 (591)
.+++.||||+|||...-.-+-.. ......+|.+...++.......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l--------~~~~~~~i~i~~s~~~~~~~~~--------------------------- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI--------FGDEESMIRIDMSEYMEKHSTS--------------------------- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH--------HSCTTCEEEEEGGGGCSSCCCC---------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--------cCCCcceEEEechhcccccccc---------------------------
Q ss_pred HhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhccccHHHHHHHHHh-----------CCCCCccEEEEe
Q 007743 221 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKL-----------LPKKDRQTALFS 288 (591)
Q Consensus 221 l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~f~~~~~~i~~~-----------l~~~~~q~ll~S 288 (591)
.+.+...+...+ ..+|+|||+|.+ .......+..++.. ... +..+|+.|
T Consensus 568 -----------~~~l~~~~~~~~------~~vl~lDEi~~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~-~~~iI~tt 627 (758)
T 3pxi_A 568 -----------GGQLTEKVRRKP------YSVVLLDAIEKA-HPDVFNILLQVLEDGRLTDSKGRTVDFR-NTILIMTS 627 (758)
T ss_dssp --------------CHHHHHHCS------SSEEEEECGGGS-CHHHHHHHHHHHHHSBCC-----CCBCT-TCEEEEEE
T ss_pred -----------cchhhHHHHhCC------CeEEEEeCcccc-CHHHHHHHHHHhccCeEEcCCCCEeccC-CeEEEEeC
No 217
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.47 E-value=3.7 Score=40.08 Aligned_cols=44 Identities=11% Similarity=-0.081 Sum_probs=28.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELA 187 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa 187 (591)
.| -+++.+|+|+|||...+-.+.+. .+. ..+..++++..-..+.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~-~~~----g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSY-MRQ----YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHH-HHH----CTTCEEEEEESSCCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHH-Hhc----CCCceEEEEeccchhh
Confidence 45 57899999999997644333332 221 1256788888655553
No 218
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=77.29 E-value=10 Score=42.38 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc-------CChHHHHHHHHHHHHHHhhcCCeEEEE
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC-------PTRELAIQTHAVAKDLLKYHSQTVGLV 208 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~-------PtreLa~q~~~~~~~~~~~~~~~~~~~ 208 (591)
+..++.+++.||+|+|||+..-.-+-.. +...+.+. ..-+....+...+.......
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~------- 297 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA------- 297 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcC-------
Q ss_pred EcCccchHHHHHHhcCCCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchhhhc----------cccHHHHHHHHHhCC
Q 007743 209 IGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILE----------ANFEEEMRQIMKLLP 278 (591)
Q Consensus 209 ~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~----------~~f~~~~~~i~~~l~ 278 (591)
..++++||+|.+.. ......+..++..+.
T Consensus 298 -----------------------------------------p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 298 -----------------------------------------PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp -----------------------------------------SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC
T ss_pred -----------------------------------------CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc
Q ss_pred CCCccEEEEeccCchh
Q 007743 279 KKDRQTALFSATQTKK 294 (591)
Q Consensus 279 ~~~~q~ll~SAT~~~~ 294 (591)
. ...++++.||-++.
T Consensus 337 ~-~~~v~vI~atn~~~ 351 (806)
T 1ypw_A 337 Q-RAHVIVMAATNRPN 351 (806)
T ss_dssp T-TSCCEEEEECSCTT
T ss_pred c-cccEEEecccCCch
No 219
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=76.56 E-value=14 Score=38.51 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 139 GKDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
|.-+.+.|++|||||...- .|..++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~--~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG--KLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH--HHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH--HHHHHhh
Confidence 4457799999999998743 3444443
No 220
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=76.30 E-value=4.3 Score=47.56 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=43.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcc-----cCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQ-----FAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~-----~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
+.|.. +|.|.-|||||.+-.--++..|.... ..+.....+|+|+=|+..|.++.+.+....
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45554 99999999999886665666665321 011233579999999999999888887654
No 221
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.04 E-value=2.7 Score=42.57 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=29.4
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL 186 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL 186 (591)
..+.++++.|+||||||...-.-+.+. .. .+..++|+=|..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~-~~------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLRE-YM------QGSRVIIIDPEREY 75 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHH-HT------TTCCEEEEESSCCS
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHH-HH------CCCEEEEEeCCcCH
Confidence 356789999999999997643333222 22 35667888887764
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.54 E-value=2.5 Score=38.62 Aligned_cols=34 Identities=29% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 123 QFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 123 ~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..-+.-|..++..+..|.-+.+.+|.|||||+.+
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3445556677777788888999999999999764
No 223
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.31 E-value=16 Score=33.97 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=50.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIPAV 418 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip~v 418 (591)
..++||.++++.-+..+...+... ++.+..++|+.+.......+ .....|+|+|.-. ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999998888777664 56788889988765543332 2457899999631 223567777
Q ss_pred cEEEE
Q 007743 419 DWIVQ 423 (591)
Q Consensus 419 ~~VI~ 423 (591)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77764
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=74.26 E-value=21 Score=34.31 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
++-+++.+++|+|||....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5567788999999997644
No 225
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.51 E-value=3.9 Score=37.36 Aligned_cols=71 Identities=6% Similarity=0.073 Sum_probs=43.7
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIPA 417 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip~ 417 (591)
...++||.++++.-+..+++.+... ++.+..++|+.+....... +. ...|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999998888877764 6788889998875544332 22 27899998521 23455666
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666653
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.50 E-value=3.3 Score=41.90 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=33.2
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDM---GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|++.+=-....+.|.+. -+.+|--++...++ -.+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHH
Confidence 456899996445555555432 12233334443333 2467999999999999764
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.48 E-value=1.5 Score=38.85 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 007743 137 MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~ 156 (591)
+.|+-+++.||+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999763
No 228
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.23 E-value=2.4 Score=43.51 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=32.2
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDM---GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|++++--....+.|.+. -+.+|--++...++ -.+-+|+.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHHH
Confidence 345799986444555544421 12233333333332 2468999999999999874
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.87 E-value=3.2 Score=40.46 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
++.+++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997644
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=72.67 E-value=1.7 Score=38.30 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.0
Q ss_pred ccCCCcEEEEccCCCCchHHhH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~ 157 (591)
+..++.+++.|++|||||...-
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHH
Confidence 3467789999999999998743
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=72.35 E-value=3.8 Score=38.52 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=28.7
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMG--FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
...|+++.-.+...+.|...- +..+..++... ....+.+++.||+|+|||+..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 356888876666666554320 00000000000 012356999999999999764
No 232
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.31 E-value=2.5 Score=43.16 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCCchHH
Q 007743 138 VGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~ 155 (591)
.|.-+++.||||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 345688999999999976
No 233
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=72.17 E-value=3.7 Score=42.77 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=38.4
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLL 198 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 198 (591)
.|....+.+-||||||++.. .+ ... .+..+|||+|+...|.|+++.+..+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a--~l---~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA--EI---AER-----HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH--HH---HHH-----SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHH--HH---HHH-----hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 46678999999999997632 21 111 23458999999999999999998764
No 234
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.05 E-value=1.4 Score=45.35 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=33.0
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDM---GFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|++.+=-....+.|.+. -+..|--++...+ --.+.+|+.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHH
Confidence 45799987666666666542 1122222333222 23468999999999999764
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=71.97 E-value=1.9 Score=41.07 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.6
Q ss_pred ccCCCcEEEEccCCCCchHHh
Q 007743 136 LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..|.-+++.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778899999999999763
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.72 E-value=20 Score=36.59 Aligned_cols=44 Identities=30% Similarity=0.312 Sum_probs=26.2
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHH
Q 007743 140 KDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQ 189 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q 189 (591)
+.+++.+++|+|||....--+ ..+.. ..|.+++++. |.+..+.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA-~~l~~-----~~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG-KFLRE-----KHKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HHHHH-----TSCCCEEEEECCCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH-----hcCCeEEEEecCCCCccHHH
Confidence 357778999999998754322 22221 1155666665 66666554
No 237
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.63 E-value=20 Score=33.64 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=51.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC-----cc--ccCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD-----VA--ARGLDIP 416 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~--~~GiDip 416 (591)
.+.++||.++++.-+..++..+... +..+..++|+......... +..+ ..|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3667999999999999888888764 5677888888876554433 2334 78999994 11 2346777
Q ss_pred CCcEEEE
Q 007743 417 AVDWIVQ 423 (591)
Q Consensus 417 ~v~~VI~ 423 (591)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8887764
No 238
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=71.23 E-value=7.2 Score=39.97 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+++.+++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999997754
No 239
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=71.02 E-value=9.1 Score=40.30 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=48.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----cccC-C-CCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AARG-L-DIPA 417 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-i-Dip~ 417 (591)
..++||.++++.-+......+... ++.+..+||+.+...+...+. ....|+|+|.- +..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888887777665 899999999997655433222 23679999963 2222 4 6778
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 240
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.69 E-value=1.7 Score=45.87 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCCchHH
Q 007743 114 FRAIQDMGFQFMTQIQARAVPP-LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 114 ~~~l~~~~~~~~~~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~ 155 (591)
...|.++|. +++.+..-+.. +-.|..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 445556663 33444444433 34788899999999999976
No 241
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=70.60 E-value=34 Score=36.04 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=54.9
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++|+.-|..++..+..... .+..+..++|+......... +. ...+|+|||. .+. .++++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcc
Confidence 456899999999999999988876532 25678888888765443222 22 4579999995 232 347888
Q ss_pred CceEEEEeCc
Q 007743 249 NLKCLVIDEA 258 (591)
Q Consensus 249 ~l~~lVlDEa 258 (591)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8888886553
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=70.44 E-value=1 Score=43.24 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=25.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHH-Hhhcc--ccCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQA-RAVPP--LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~-~~i~~--il~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|++++--..+.+.|...= ..|+.. .++.. +.-.+.+++.||.|+|||+..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 457888876666666665421 111111 11111 111234999999999999763
No 243
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=70.32 E-value=7.7 Score=34.42 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=43.2
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH---HHHHh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE---AERIV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++++.-+..+...+.. .+..+..+.|+.+.... ...+. ...+|+|+|. . +. .++++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~--~Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----AA--RGLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----hh--cCCCcc
Confidence 356799999999999988877765 36778888887654322 22232 3578999994 2 21 236677
Q ss_pred CceEEEE
Q 007743 249 NLKCLVI 255 (591)
Q Consensus 249 ~l~~lVl 255 (591)
.+.+||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 7888776
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=69.82 E-value=2.1 Score=40.23 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=29.6
Q ss_pred cccccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhccc--cCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDMG--FQFMTQIQARAVPPL--MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~i--l~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|+++.-.+.....+...- |..+ .++..+ --.+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3457888876666655554331 1111 111111 11234999999999999763
No 245
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.19 E-value=17 Score=38.14 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=63.8
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccc
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSAR 214 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 214 (591)
-+..|.-+++.+++|+|||.....-+- +... .|..++++++-.. ..|+...+.. .+. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g--~~~~-----~G~~vi~~~~ee~-~~~l~~~~~~----~g~---------~~ 335 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVE--NACA-----NKERAILFAYEES-RAQLLRNAYS----WGM---------DF 335 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHH--HHHT-----TTCCEEEEESSSC-HHHHHHHHHT----TSC---------CH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH--HHHh-----CCCCEEEEEEeCC-HHHHHHHHHH----cCC---------CH
Confidence 345677889999999999976433221 1111 2445677776432 2344433321 111 11
Q ss_pred hHHHHHHhcC-CCEEEe-----CchHHHHHHhcCCCCccCCceEEEEeCchhhhccc-----cHHHHHHHHHhCCCCCcc
Q 007743 215 RGEAERIVKG-VNLLVA-----TPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEAN-----FEEEMRQIMKLLPKKDRQ 283 (591)
Q Consensus 215 ~~~~~~l~~~-~~Iiv~-----Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~l~~~~-----f~~~~~~i~~~l~~~~~q 283 (591)
.+.. ..+ ..+.-. +.|.....+... ....+.++||+| -=.-++.. ....+..++..+.....-
T Consensus 336 -~~~~--~~g~~~~~~~~p~~LS~g~~q~~~~a~--~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~t 409 (525)
T 1tf7_A 336 -EEME--RQNLLKIVCAYPESAGLEDHLQIIKSE--INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEIT 409 (525)
T ss_dssp -HHHH--HTTSEEECCCCGGGSCHHHHHHHHHHH--HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred -HHHH--hCCCEEEEEeccccCCHHHHHHHHHHH--HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCE
Confidence 1110 111 111111 333333332221 123456899999 55555555 566666666666543445
Q ss_pred EEEEeccC
Q 007743 284 TALFSATQ 291 (591)
Q Consensus 284 ~ll~SAT~ 291 (591)
+++.|-..
T Consensus 410 vilvsh~~ 417 (525)
T 1tf7_A 410 GLFTNTSD 417 (525)
T ss_dssp EEEEEECS
T ss_pred EEEEECcc
Confidence 55555443
No 246
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.03 E-value=2.2 Score=42.06 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
+-+++.||||||||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999764
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=68.91 E-value=1.9 Score=42.07 Aligned_cols=17 Identities=35% Similarity=0.132 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
+-+++.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999764
No 248
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=68.35 E-value=2.4 Score=38.43 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=17.7
Q ss_pred ccCCCcEEEEccCCCCchHHh
Q 007743 136 LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..|+-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456788999999999999763
No 249
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=68.32 E-value=2.3 Score=37.27 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
++-+++.|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999774
No 250
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=68.21 E-value=15 Score=35.41 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=50.3
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccCC
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYKN 249 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~ 249 (591)
+.++||.++++.-+..++..+.. .+..+..++|+......... +. ...+|+|||. .+. .++++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCccccc
Confidence 56799999999998887776653 46788889998765544332 22 3479999994 222 2477788
Q ss_pred ceEEEE
Q 007743 250 LKCLVI 255 (591)
Q Consensus 250 l~~lVl 255 (591)
+.+||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888875
No 251
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.95 E-value=4.2 Score=42.62 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCCcHHHHHhhccccCCCcEEEEccCCCCchHH
Q 007743 122 FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 122 ~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~ 155 (591)
+.--..+-..++..+..+.++++.||+|+|||..
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3333444455566677889999999999999976
No 252
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=67.95 E-value=2.7 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHH
Q 007743 138 VGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~ 155 (591)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 567799999999999865
No 253
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.92 E-value=2.9 Score=37.59 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++.+++.|++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998743
No 254
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=67.85 E-value=20 Score=35.87 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++++.-+..+++.+.. .+..+..++|+......... +. ...+|+|||. .+.. ++++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 466799999999999988887765 36778888888765433222 22 3579999995 3333 37788
Q ss_pred CceEEEE
Q 007743 249 NLKCLVI 255 (591)
Q Consensus 249 ~l~~lVl 255 (591)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 255
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=67.73 E-value=2.6 Score=42.18 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.5
Q ss_pred ccCCCcEEEEccCCCCchHH
Q 007743 136 LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~ 155 (591)
+..|..+++.||||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44788999999999999976
No 256
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=67.69 E-value=2.3 Score=37.58 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998754
No 257
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=67.66 E-value=2.2 Score=41.56 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999764
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=67.35 E-value=3.1 Score=37.86 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999763
No 259
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=67.21 E-value=44 Score=35.39 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=55.6
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH---HHh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE---RIV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++|+.-|..++..+..... .+..+..++|+........ .+. ...+|+|||. .+. .++++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcc
Confidence 456899999999999999988876533 2567888888876543322 222 3578999995 232 347888
Q ss_pred CceEEEEeCch
Q 007743 249 NLKCLVIDEAD 259 (591)
Q Consensus 249 ~l~~lVlDEah 259 (591)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 89988876543
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=67.07 E-value=2.5 Score=38.08 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 007743 137 MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~ 156 (591)
..|.-+++.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999763
No 261
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=67.02 E-value=2.4 Score=42.28 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=19.3
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556778887 566799999999873
No 262
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=66.94 E-value=6 Score=41.47 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=20.4
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLY 165 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~ 165 (591)
.+.++++.|.||||||.+.-.-++..++
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999875443444443
No 263
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=66.79 E-value=3.3 Score=39.13 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999763
No 264
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.78 E-value=4.6 Score=40.24 Aligned_cols=19 Identities=42% Similarity=0.413 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999864
No 265
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=66.69 E-value=38 Score=35.29 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=24.7
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEc--CChHHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVIC--PTRELAIQ 189 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~--PtreLa~q 189 (591)
.+++++++|+|||..+.--+ ..+.. .|.+++++. |.|..+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~------~G~kVllVd~D~~r~aa~~ 146 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR------KGWKTCLICADTFRAGAFD 146 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH------TTCCEEEEEECCSSSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh------CCCeEEEEeccccchhHHH
Confidence 57888999999998753222 22222 245566665 34555543
No 266
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.65 E-value=8.1 Score=39.34 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=33.4
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQD---MGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~---~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|++++=-+...+.|.+ +-+.+|--++...+++ .+.+|+.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~---prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP---PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC---CSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCCCceECCCCchHHHHH
Confidence 45689999633444444432 2223444444444432 467999999999999764
No 267
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=66.41 E-value=3.5 Score=40.91 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=20.8
Q ss_pred HhhccccCCCc--EEEEccCCCCchHHh
Q 007743 131 RAVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 131 ~~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
..+..++.|.| +++-|+||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 36677889987 456799999999874
No 268
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=66.22 E-value=18 Score=36.89 Aligned_cols=71 Identities=8% Similarity=0.031 Sum_probs=52.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----ccc-CCCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AAR-GLDIPAV 418 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~-GiDip~v 418 (591)
..++||.++|+.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|.- +.+ .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999998888765 46788899999876544333 245789999962 223 3567788
Q ss_pred cEEEE
Q 007743 419 DWIVQ 423 (591)
Q Consensus 419 ~~VI~ 423 (591)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88774
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.12 E-value=2.2 Score=37.97 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.6
Q ss_pred ccCCCcEEEEccCCCCchHH
Q 007743 136 LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~ 155 (591)
+..|.-+++.||+|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34577789999999999976
No 270
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=65.93 E-value=3.4 Score=41.03 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=20.9
Q ss_pred HhhccccCCCcE--EEEccCCCCchHHh
Q 007743 131 RAVPPLMVGKDV--LGAARTGSGKTLAF 156 (591)
Q Consensus 131 ~~i~~il~g~dv--lv~a~TGsGKTl~~ 156 (591)
..+..++.|.|+ ++-|+||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 367778899884 56799999999874
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=65.74 E-value=3.6 Score=37.15 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 007743 137 MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~ 156 (591)
+.|+-+++.||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 46788899999999999753
No 272
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=65.69 E-value=7.2 Score=38.71 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++.+++.||+|+|||....
T Consensus 69 ~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35689999999999998743
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=65.57 E-value=3.3 Score=37.29 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999764
No 274
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=65.48 E-value=2.8 Score=41.21 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=19.0
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445678887 567799999999873
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=65.21 E-value=2.5 Score=36.64 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999864
No 276
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=64.84 E-value=8.5 Score=36.48 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCCCCcHHHH-HhhccccCCC-----cEEEEccCCCCchHHhH
Q 007743 112 HTFRAIQDMGFQFMTQIQA-RAVPPLMVGK-----DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 112 ~l~~~l~~~~~~~~~~~Q~-~~i~~il~g~-----dvlv~a~TGsGKTl~~~ 157 (591)
.+.+.|+-.||. +++- .++..++.++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888888875 5553 2344445443 48999999999998754
No 277
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=64.76 E-value=2.3 Score=42.00 Aligned_cols=19 Identities=47% Similarity=0.657 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
..|..+++.||||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688999999999999975
No 278
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.72 E-value=20 Score=35.04 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=51.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIPA 417 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip~ 417 (591)
...++||.++++.-+..+++.+... ++.+..++|+.........+. ...|+|+|.-. ...+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 4678999999999988888888764 677888999887665544332 47899999631 22356777
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 279
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.45 E-value=11 Score=34.24 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=46.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc--------CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----ccc-CCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AAR-GLD 414 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~--------~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~-GiD 414 (591)
..++||.++++.-+..+++.+... ++.+..++|+.+...... .+ .....|+|+|.- +.+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999998888877654 577888888876433211 11 235679999952 222 345
Q ss_pred CCCCcEEEE
Q 007743 415 IPAVDWIVQ 423 (591)
Q Consensus 415 ip~v~~VI~ 423 (591)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 556666553
No 280
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=64.36 E-value=3.6 Score=39.28 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=30.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccc--cCCCcEEEEccCCCCchHHh
Q 007743 100 STTSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPL--MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 100 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i--l~g~dvlv~a~TGsGKTl~~ 156 (591)
+..+|+++.-.+.....+...-...-. ..++..+ .-.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~---~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN---PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC---HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC---HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 346788887777766666543110000 1111111 11234999999999999763
No 281
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=64.36 E-value=2 Score=41.57 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
.+.+++.||+|+|||...
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999764
No 282
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.85 E-value=7.9 Score=35.87 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=48.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----ccc---CCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AAR---GLDIP 416 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~---GiDip 416 (591)
+.++||.++++.-+..++..+... ++.+..++|+.....+ ......+...|+|+|.- +.+ ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999988888775 6677777766432211 11223456789999942 112 46777
Q ss_pred CCcEEEE
Q 007743 417 AVDWIVQ 423 (591)
Q Consensus 417 ~v~~VI~ 423 (591)
++++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 7777764
No 283
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=63.80 E-value=3 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+.-+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 566899999999999864
No 284
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.63 E-value=3.2 Score=41.27 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=18.3
Q ss_pred hccccCCCc--EEEEccCCCCchHHh
Q 007743 133 VPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
+..++.|.+ +++-|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345678887 566799999999873
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.45 E-value=3.2 Score=41.70 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.2
Q ss_pred ccCCCcEEEEccCCCCchHHh
Q 007743 136 LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..|.-+++.||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345777899999999999763
No 286
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=63.38 E-value=10 Score=39.86 Aligned_cols=71 Identities=11% Similarity=0.215 Sum_probs=50.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----cccC-C-CCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AARG-L-DIPA 417 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-i-Dip~ 417 (591)
..++||.++++.-+......+... ++.+..+||+.+...+...+. +...|+|+|.- +..+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998888777777665 899999999997655433322 23679999963 1222 3 5667
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888775
No 287
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.29 E-value=3.3 Score=36.75 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999874
No 288
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.26 E-value=2.8 Score=41.52 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=18.2
Q ss_pred hccccCCCc--EEEEccCCCCchHHh
Q 007743 133 VPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
+..++.|.+ +++-|+||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567877 467799999999873
No 289
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=63.20 E-value=7.8 Score=37.21 Aligned_cols=19 Identities=37% Similarity=0.364 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
....+++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999764
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=63.18 E-value=3.5 Score=38.82 Aligned_cols=16 Identities=38% Similarity=-0.020 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.||||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999999764
No 291
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=63.13 E-value=3.2 Score=41.43 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.4
Q ss_pred hccccCCCc--EEEEccCCCCchHHh
Q 007743 133 VPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
+..++.|.| +++-|+||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 345668887 566799999999873
No 292
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=62.98 E-value=3.4 Score=41.91 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.3
Q ss_pred hccccCCCc--EEEEccCCCCchHHh
Q 007743 133 VPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
+..++.|.+ +++-|.||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345668887 566799999999874
No 293
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=62.88 E-value=3.2 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=18.7
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445678887 456799999999873
No 294
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.88 E-value=3.4 Score=41.14 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=18.8
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445678887 567799999999873
No 295
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=62.87 E-value=3.3 Score=41.10 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=18.1
Q ss_pred hccccCCCc--EEEEccCCCCchHHh
Q 007743 133 VPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
+..++.|.| +++-|+||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344568877 566799999999873
No 296
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=62.83 E-value=19 Score=36.75 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=53.8
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHc-CC---CeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-c-----ccCCCCC
Q 007743 347 NLSKKVMVFFSSCNSVKFHSELLRYI-QV---DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-A-----ARGLDIP 416 (591)
Q Consensus 347 ~~~~~~iVF~~s~~~~~~l~~~L~~~-~~---~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-~-----~~GiDip 416 (591)
....++||.|++..-+......+... +. .+..+||+.....+..... ...|+|+|.- + ...+...
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 35789999999999998888877765 55 8899999999877655443 3679999852 2 1246677
Q ss_pred CCcEEEE
Q 007743 417 AVDWIVQ 423 (591)
Q Consensus 417 ~v~~VI~ 423 (591)
.+++||.
T Consensus 125 ~~~~vIi 131 (494)
T 1wp9_A 125 DVSLIVF 131 (494)
T ss_dssp SCSEEEE
T ss_pred hceEEEE
Confidence 7888774
No 297
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=62.75 E-value=3.4 Score=40.21 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 007743 137 MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~ 156 (591)
.....+++.|++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34678999999999999764
No 298
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=62.61 E-value=3.4 Score=40.70 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.4
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556678887 567799999999774
No 299
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=62.52 E-value=3.4 Score=40.98 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=18.7
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445668887 466799999999873
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=62.48 E-value=3.5 Score=35.91 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999763
No 301
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.47 E-value=3.3 Score=42.02 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=20.0
Q ss_pred hhccccCCCcE--EEEccCCCCchHHh
Q 007743 132 AVPPLMVGKDV--LGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~dv--lv~a~TGsGKTl~~ 156 (591)
.+..++.|.|+ ++-|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 56677899874 56799999999884
No 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.25 E-value=3.5 Score=36.61 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
+-+.+.||+|||||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44788999999999763
No 303
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=62.11 E-value=3.4 Score=41.19 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.0
Q ss_pred hhccccCCCcE--EEEccCCCCchHHh
Q 007743 132 AVPPLMVGKDV--LGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~dv--lv~a~TGsGKTl~~ 156 (591)
.+..++.|.|+ ++-|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 44556788874 56799999999873
No 304
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.83 E-value=4.5 Score=36.29 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999763
No 305
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=61.82 E-value=3 Score=36.53 Aligned_cols=20 Identities=25% Similarity=0.064 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.|.-+.+.||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56668899999999997744
No 306
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=61.75 E-value=7.7 Score=37.66 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=18.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
.|.-+.+.||+|||||... -.+..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll--~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI--AKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH--HHHHHHHH
Confidence 3566788999999999773 34444444
No 307
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=61.74 E-value=3.3 Score=39.91 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=30.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHH-Hhhccc-cCCCcEEEEccCCCCchHHh
Q 007743 101 TTSFDSLGLSQHTFRAIQDMGFQFMTQIQA-RAVPPL-MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 101 ~~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~-~~i~~i-l~g~dvlv~a~TGsGKTl~~ 156 (591)
..+|+++.-.....+.|...-. .+... +.+..+ ..++.+++.||+|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3568888666666666543210 01100 001111 23578999999999999764
No 308
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=61.73 E-value=3.5 Score=40.96 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.4
Q ss_pred hccccCCCc--EEEEccCCCCchHHh
Q 007743 133 VPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
+..++.|.+ +++-|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 445668877 566799999999874
No 309
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=61.66 E-value=7.9 Score=37.41 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++-+++.+++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999998744
No 310
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=61.60 E-value=17 Score=36.10 Aligned_cols=71 Identities=6% Similarity=0.069 Sum_probs=52.1
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIPA 417 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip~ 417 (591)
...++||.++++.-+..+...+... ++.+..++|+.+.......+. ...|+|+|.-. ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999998888777654 678899999998766555443 46799999521 23456677
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 311
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=61.58 E-value=3.6 Score=41.16 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=18.7
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.+ +++-|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445678887 566799999999773
No 312
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=61.56 E-value=3.4 Score=41.23 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=19.1
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.+ +++-|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678887 466799999999773
No 313
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=61.48 E-value=3.5 Score=41.02 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.3
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556678887 466799999999874
No 314
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=61.34 E-value=3.4 Score=41.54 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=17.3
Q ss_pred cccCCCc--EEEEccCCCCchHHh
Q 007743 135 PLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 135 ~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.++.|.+ +++-|+||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4568887 556799999999774
No 315
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=61.30 E-value=3.1 Score=41.62 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=19.2
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4555678887 456799999999873
No 316
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=61.27 E-value=35 Score=33.88 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=51.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----cc-cCCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AA-RGLDIPA 417 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-~GiDip~ 417 (591)
...++||.++++.-+..+.+.+... ++.+..++|+......... ..+...|+|+|.- +. ...++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 3558999999999998888877764 6788889998876543222 2356789999952 22 3466778
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 317
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.19 E-value=5.9 Score=38.37 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=47.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------c-cCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI-----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------A-RGLDIP 416 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~-~GiDip 416 (591)
..++||.++|+.-+..++..+..+ ++.+..++|+...... ......|||+|.-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999988888765 3566777776653221 13456799999632 1 356777
Q ss_pred CCcEEEE
Q 007743 417 AVDWIVQ 423 (591)
Q Consensus 417 ~v~~VI~ 423 (591)
++++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888774
No 318
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.76 E-value=3.8 Score=40.86 Aligned_cols=19 Identities=37% Similarity=0.358 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+.-+++.||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4457899999999999763
No 319
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.75 E-value=16 Score=43.31 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=26.0
Q ss_pred CCceEEEEeCchhhhccccHHHHHHHHHhCCCCCccEEEEe
Q 007743 248 KNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 248 ~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
++-++||+|||=--+|..-...+...+..+.+ ++.+++.+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IA 1273 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIA 1273 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEEC
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CCEEEEec
Confidence 44578999999877776656666666666554 44444433
No 320
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=60.46 E-value=4 Score=40.91 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=20.0
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5667788987 456799999999873
No 321
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.45 E-value=3.5 Score=41.96 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=19.7
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5566778987 456799999999873
No 322
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=60.42 E-value=24 Score=35.21 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=51.0
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccCC
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYKN 249 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~ 249 (591)
+.++||.++++.-|..+++.+... +..+..++|+......... +. ...+|+|+|. .+. .++++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccC
Confidence 467999999999999988877654 6678888888765443322 22 3478999994 232 3478888
Q ss_pred ceEEEE
Q 007743 250 LKCLVI 255 (591)
Q Consensus 250 l~~lVl 255 (591)
+++||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998885
No 323
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=60.42 E-value=3.8 Score=41.24 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.5
Q ss_pred hccccCCCc--EEEEccCCCCchHHh
Q 007743 133 VPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
+..++.|.+ +++-|+||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445678887 566799999999884
No 324
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=60.24 E-value=4.2 Score=39.83 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999764
No 325
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=59.90 E-value=43 Score=33.35 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHh----cCCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEe
Q 007743 335 KRFILLYSFLKR----NLSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCT 406 (591)
Q Consensus 335 ~k~~~l~~~l~~----~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT 406 (591)
+.+..+..++.. ....++||.++++.-+..+++.+... ++.+..++|+.........+. ....|+|+|
T Consensus 87 KT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~T 162 (410)
T 2j0s_A 87 KTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGT 162 (410)
T ss_dssp HHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEEC
T ss_pred chHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcC
Confidence 333444444433 24678999999999999888888765 467888899988766544433 245799999
Q ss_pred C-----ccc-cCCCCCCCcEEEE
Q 007743 407 D-----VAA-RGLDIPAVDWIVQ 423 (591)
Q Consensus 407 ~-----~~~-~GiDip~v~~VI~ 423 (591)
. .+. ..++...+++||.
T Consensus 163 p~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 163 PGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp HHHHHHHHHTTSSCCTTCCEEEE
T ss_pred HHHHHHHHHhCCccHhheeEEEE
Confidence 5 222 3466777888774
No 326
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=59.72 E-value=3.7 Score=35.57 Aligned_cols=16 Identities=6% Similarity=-0.180 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999874
No 327
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=59.63 E-value=4.1 Score=36.62 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|.-+++.|+.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999764
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=59.55 E-value=3.7 Score=35.87 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999764
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=59.52 E-value=4.3 Score=36.32 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchHH
Q 007743 140 KDVLGAARTGSGKTLA 155 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~ 155 (591)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999975
No 330
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=59.27 E-value=1e+02 Score=33.24 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=55.9
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++|+.-|..+.+.+... ++.+..++|+......... +. ...+|+|||. .+ ..++.+.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l--~~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL--REGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC--STTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh--hCCcccC
Confidence 3568999999999998877777653 6777777877654333222 23 3479999995 22 2347888
Q ss_pred CceEEEEeCchhh
Q 007743 249 NLKCLVIDEADRI 261 (591)
Q Consensus 249 ~l~~lVlDEah~l 261 (591)
.++++|+-+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999998754
No 331
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.23 E-value=17 Score=40.43 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----cccC-C-CCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AARG-L-DIPA 417 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-i-Dip~ 417 (591)
.+++||.+|++.-+......+... ++.+..+||+.+...+...+. +...|+|+|.- +.++ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877777665 899999999997665433322 35789999952 1222 3 5667
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 332
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=59.19 E-value=4.2 Score=37.39 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=16.6
Q ss_pred ccCCCcEEEEccCCCCchHHh
Q 007743 136 LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~ 156 (591)
+-.|+-+++.||.|||||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778899999999999763
No 333
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=59.18 E-value=3.6 Score=41.23 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=18.8
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.+ +++-|+||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445678887 566799999999773
No 334
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.17 E-value=5.5 Score=36.46 Aligned_cols=20 Identities=15% Similarity=0.033 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 007743 137 MVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~ 156 (591)
..|+-+.+.||+|||||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36778899999999999763
No 335
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=59.09 E-value=12 Score=38.31 Aligned_cols=54 Identities=6% Similarity=0.030 Sum_probs=38.9
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-cCCCEEEeCc
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATP 232 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp 232 (591)
+.++||++|++.-+..+++.+... +..+..++|+.. ......+. ...+|+|||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc
Confidence 446999999999999988887764 677888887632 22222333 4579999995
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.77 E-value=4.6 Score=36.47 Aligned_cols=25 Identities=28% Similarity=-0.003 Sum_probs=19.5
Q ss_pred hhccccCCCcEEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+|.+..+.-+.+.|++|||||...
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHH
Confidence 3455666777889999999999763
No 337
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=58.66 E-value=9.1 Score=38.08 Aligned_cols=40 Identities=25% Similarity=0.137 Sum_probs=26.6
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
+..|.-+++.+++|+|||...+-.+.+. .. .+..++++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~-~~------~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA-QR------EGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH-HH------TTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH-HH------CCCeEEEEeC
Confidence 3467789999999999997754333332 22 2445777765
No 338
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.65 E-value=11 Score=38.77 Aligned_cols=48 Identities=25% Similarity=0.186 Sum_probs=28.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCCchHHhH
Q 007743 102 TSFDSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~ 157 (591)
..|+++.-.....+.+... -..+......++.+++.||+|+|||+...
T Consensus 34 ~~~~~iiG~~~~~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVI--------VELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp SEETTEESCHHHHHHHHHH--------HHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hchhhccCHHHHHHHHHHH--------HHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 4567765555555544321 01111122345789999999999997753
No 339
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=58.59 E-value=54 Score=32.20 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHH---HHh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAE---RIV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++++.-|..+++.+... +..+..++|+........ .+. ...+|+|+|. .+. .++++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 4568999999999999888877653 667888888876543322 222 3478999994 232 347888
Q ss_pred CceEEEEeCch
Q 007743 249 NLKCLVIDEAD 259 (591)
Q Consensus 249 ~l~~lVlDEah 259 (591)
++++||.-...
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 89998875554
No 340
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=58.49 E-value=10 Score=39.00 Aligned_cols=41 Identities=29% Similarity=0.109 Sum_probs=26.9
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
-+..|.=+++.|++|+|||...+--+.+.. . .+..+++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a-~------~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMS-D------NDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHH-H------TTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHH-H------cCCEEEEEEC
Confidence 345667789999999999976443333332 2 2556788763
No 341
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=58.46 E-value=4.8 Score=39.76 Aligned_cols=16 Identities=31% Similarity=0.144 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999764
No 342
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=58.32 E-value=3.7 Score=40.26 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.1
Q ss_pred hccccCCCcEEEEccCCCCchHHh
Q 007743 133 VPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 133 i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
...+..+.++++.||+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334456789999999999999764
No 343
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=58.24 E-value=10 Score=40.09 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=25.8
Q ss_pred eEEEEeCchhhhc---cccHHHHHHHHHhCCCCCccEEEEecc
Q 007743 251 KCLVIDEADRILE---ANFEEEMRQIMKLLPKKDRQTALFSAT 290 (591)
Q Consensus 251 ~~lVlDEah~l~~---~~f~~~~~~i~~~l~~~~~q~ll~SAT 290 (591)
-+|||||+|.++. ..+...+..|...-+.....+++.|-.
T Consensus 345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQR 387 (574)
T 2iut_A 345 IVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQR 387 (574)
T ss_dssp EEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESC
T ss_pred EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 4899999997764 234455666777666555555554443
No 344
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=58.20 E-value=4.5 Score=36.59 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=16.7
Q ss_pred cccCCCcEEEEccCCCCchHHh
Q 007743 135 PLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..|.-+.+.||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888899999999999764
No 345
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=58.09 E-value=3.8 Score=35.79 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|.-+++.|+.|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999764
No 346
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=58.08 E-value=10 Score=37.13 Aligned_cols=58 Identities=16% Similarity=-0.011 Sum_probs=30.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHH-HHHHHHHHH
Q 007743 137 MVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTREL-AIQTHAVAK 195 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreL-a~q~~~~~~ 195 (591)
..|.-+++.|++|+|||...+-.+.+......+. ..+..++++.--..+ ..++...+.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-g~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-GLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-CCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3567789999999999976443332211110000 114567777644322 334443433
No 347
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.96 E-value=5.8 Score=35.97 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=22.3
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHhH
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++.++.. ..+..|.-+++.|++|||||...-
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 34555544 234567778999999999997643
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=57.90 E-value=3.3 Score=36.59 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999998743
No 349
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=57.76 E-value=12 Score=38.44 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=44.7
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceE
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKC 252 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~ 252 (591)
+.++||.+|+++-|..+++.+... +..+..++|.. .......+. ...+|+|||. .+. .++++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAE--MGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEESS-----STT--CCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhh--eeeccC-ceE
Confidence 457999999999999988887754 67788888843 333333333 3479999995 232 236677 777
Q ss_pred EE
Q 007743 253 LV 254 (591)
Q Consensus 253 lV 254 (591)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 350
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=57.76 E-value=9.3 Score=37.89 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=26.6
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcC
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICP 182 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~P 182 (591)
-+..|.-+++.+++|+|||...+..+... .. .+..++++.-
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~-~~------~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA-QA------AGGIAAFIDA 97 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH-HH------TTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH-Hh------CCCeEEEEEC
Confidence 34467789999999999997644333332 22 2455777764
No 351
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=57.58 E-value=23 Score=40.78 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CC----CeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-cccCCC-CCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QV----DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-AARGLD-IPA 417 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~----~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-~~~GiD-ip~ 417 (591)
.+.++||.++|+.-+..++..+... ++ .+..+||+.+...+....+.+.+ ..|+|+|.- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4678999999999998888877654 56 78999999999988888887777 899999962 111111 557
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 352
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=57.47 E-value=4.6 Score=41.48 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=19.0
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..++.|.| +++-|.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678887 566799999999874
No 353
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=57.23 E-value=8.6 Score=30.60 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=33.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCH
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQ 385 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~ 385 (591)
...+++|||.+-..+...+..|...|+++..+.|++..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 35689999999888999999999999999999999763
No 354
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=56.68 E-value=11 Score=34.84 Aligned_cols=20 Identities=45% Similarity=0.511 Sum_probs=16.0
Q ss_pred cEEEEccCCCCchHHhHHHH
Q 007743 141 DVLGAARTGSGKTLAFLIPA 160 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~lp~ 160 (591)
++++.++.|+|||...+--+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999998854333
No 355
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=56.64 E-value=11 Score=28.97 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=31.4
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCCeEeccCccC
Q 007743 350 KKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQK 384 (591)
Q Consensus 350 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 384 (591)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999999888899875
No 356
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=56.62 E-value=5.1 Score=40.50 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=13.3
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.||||||||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678999999999664
No 357
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=56.45 E-value=8.8 Score=37.20 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=19.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
.|.-+.+.||+|+|||... ..+..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll--~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL--GKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH--HHHHHHHH
Confidence 5667889999999999873 33444443
No 358
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=55.92 E-value=5.4 Score=36.74 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=13.4
Q ss_pred ccCCCcEEEEccCCCCchHHh
Q 007743 136 LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~ 156 (591)
+..|.-+.+.||+|||||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 446777889999999999773
No 359
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=55.90 E-value=76 Score=34.31 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=55.1
Q ss_pred CCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHH---Hh-cCCCEEEeCchHHHHHHhcCCCCccC
Q 007743 173 NGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAER---IV-KGVNLLVATPGRLLDHLQNTKGFIYK 248 (591)
Q Consensus 173 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 248 (591)
.+.++||.++|+.-|..+.+.+... ++.+..++|+......... +. ...+|+|||.- + ..++++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l--~~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L--REGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C--CTTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h--hcCccCC
Confidence 3568999999999998887777653 6677777877654433222 33 34799999942 2 2347888
Q ss_pred CceEEEEeCchhh
Q 007743 249 NLKCLVIDEADRI 261 (591)
Q Consensus 249 ~l~~lVlDEah~l 261 (591)
.++++|+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 9999999888753
No 360
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.84 E-value=9.8 Score=45.83 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHH
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGE 217 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 217 (591)
.|+-+.+.+|.|||||+..+- ++....+ .|..|+++.+--+|.... ++++ ++..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~-~~a~~~~------~g~~~~~i~~e~~~~~~~---~~~~----Gv~~------------ 1483 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQ-VIAAAQR------EGKTCAFIDAEHALDPIY---ARKL----GVDI------------ 1483 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHHHHHH------TTCCEEEECTTSCCCHHH---HHHT----TCCG------------
T ss_pred CCCEEEEEcCCCCCHHHHHHH-HHHHHHh------cCCeEEEEecCCCCCHHH---HHHc----CCCH------------
Confidence 456799999999999987543 3333222 467788888876665442 3333 2211
Q ss_pred HHHHhcCCCEEEeCchHHHHHHhcCCC-CccCCceEEEEeCchhhhccc-----------------cHHHHHHHHHhCCC
Q 007743 218 AERIVKGVNLLVATPGRLLDHLQNTKG-FIYKNLKCLVIDEADRILEAN-----------------FEEEMRQIMKLLPK 279 (591)
Q Consensus 218 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-~~~~~l~~lVlDEah~l~~~~-----------------f~~~~~~i~~~l~~ 279 (591)
-+++|+-|..--++|.-... +.-..+++||+|.+-.+.... +...+.++...+.+
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~ 1556 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1556 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 13667777443222211000 111347899999988776421 11234444445544
Q ss_pred CCccEEEEeccCchhH
Q 007743 280 KDRQTALFSATQTKKV 295 (591)
Q Consensus 280 ~~~q~ll~SAT~~~~~ 295 (591)
..-+++|...+...+
T Consensus 1557 -~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1557 -SNTLLIFINQIRMKI 1571 (1706)
T ss_dssp -HTCEEEEEECBC---
T ss_pred -CCcEEEEeecccccc
Confidence 344666666655443
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=55.73 E-value=5.1 Score=35.86 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999874
No 362
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=55.51 E-value=6.2 Score=37.09 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.4
Q ss_pred ccCCCcEEEEccCCCCchHHhH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+.|+.+++.|++|||||...-
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3458999999999999998743
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=55.32 E-value=5.6 Score=35.68 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+.-+++.|+.|||||...
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999874
No 364
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=55.04 E-value=53 Score=32.63 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----c-ccCCCCCC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----A-ARGLDIPA 417 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~-~~GiDip~ 417 (591)
...++||.++++.-+..+.+.+... +..+..++|+...... ...+..+...|+|+|.- + ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4678999999999998888888765 5677788888765443 34455577899999952 2 23456677
Q ss_pred CcEEEE
Q 007743 418 VDWIVQ 423 (591)
Q Consensus 418 v~~VI~ 423 (591)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787764
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=54.60 E-value=4.6 Score=35.75 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999998743
No 366
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.51 E-value=7.8 Score=49.61 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhc---cccCCCcEEEEccCCCCchHHhH
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQARAVP---PLMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q~~~i~---~il~g~dvlv~a~TGsGKTl~~~ 157 (591)
|...+.+.+.++|+..--.+-.+++. .+....-+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44567777778888543333334443 34456679999999999999965
No 367
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=54.10 E-value=12 Score=33.57 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCcEEEEecChhhHHH-HHHHHHHc---CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 349 SKKVMVFFSSCNSVKF-HSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~-l~~~L~~~---~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
..++||+|++...+.. +.+.+... ++.+..++|+.....+...+. ....|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 6789999999888777 55555443 678888998765433222211 2467899885
No 368
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.44 E-value=5.3 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
.-+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999874
No 369
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.43 E-value=5.4 Score=36.09 Aligned_cols=19 Identities=26% Similarity=0.123 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|.-+.+.||+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556789999999999753
No 370
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=53.26 E-value=10 Score=29.96 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=32.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQK 384 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 384 (591)
...+++|||.+-......+..|...|+.++.+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 3578999999988899999999999999888888874
No 371
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=53.21 E-value=38 Score=37.57 Aligned_cols=84 Identities=8% Similarity=-0.032 Sum_probs=56.1
Q ss_pred hhHHHHHHHHH-HhcCCCcEEEEecChhhHHHHHHHH----HHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc
Q 007743 334 AKRFILLYSFL-KRNLSKKVMVFFSSCNSVKFHSELL----RYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV 408 (591)
Q Consensus 334 ~~k~~~l~~~l-~~~~~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~ 408 (591)
.+.+..++.++ ....+..++|.++|+.-+.+.++.+ ..+++.+..+.|+++...|.... ...|+|+|+-
T Consensus 99 GKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 99 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp CHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 34444444444 2334668999999998887666555 44589999999999987655443 3789999962
Q ss_pred c------ccC-------CCCCCCcEEEE
Q 007743 409 A------ARG-------LDIPAVDWIVQ 423 (591)
Q Consensus 409 ~------~~G-------iDip~v~~VI~ 423 (591)
- -.+ +...++.++|.
T Consensus 173 rl~fDyLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 173 EYGFDYLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHHHHHHTTCSSGGGCCCCSCCEEEE
T ss_pred hhhHHHHHhhhhccHhHhcccCCcEEEE
Confidence 1 122 45567777763
No 372
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.15 E-value=1.1e+02 Score=29.55 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
++++.||.|+|||....
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999997754
No 373
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=53.04 E-value=5.6 Score=38.27 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+.-++++||+|||||...
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999764
No 374
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=52.92 E-value=5.2 Score=35.41 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999864
No 375
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=52.52 E-value=20 Score=31.83 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=20.6
Q ss_pred CCEEEeCchHHHHHHhcCCCCccCCceEEEEeCchh
Q 007743 225 VNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADR 260 (591)
Q Consensus 225 ~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~lVlDEah~ 260 (591)
.+++-+.+..+...+..-. ..++++|+|=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l~----~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKDL----ADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHHT----TTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHhc----CCCCEEEEECCCC
Confidence 4666666677766665422 4578999996543
No 376
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=52.51 E-value=6 Score=34.21 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
+++++.++.|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998754
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.48 E-value=6 Score=35.06 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999874
No 378
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=52.46 E-value=5.7 Score=35.16 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.||+|||||...
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999764
No 379
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=52.36 E-value=7.7 Score=38.81 Aligned_cols=20 Identities=40% Similarity=0.413 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
....+++.||+|+|||...-
T Consensus 71 ~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 35689999999999997643
No 380
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=52.13 E-value=6 Score=39.40 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCCc--EEEEccCCCCchHHh
Q 007743 138 VGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~d--vlv~a~TGsGKTl~~ 156 (591)
.|.+ +++-|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 578899999999874
No 381
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=51.99 E-value=43 Score=37.14 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=56.6
Q ss_pred hhHHHHHHHHH-HhcCCCcEEEEecChhhHHHHHHHH----HHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc
Q 007743 334 AKRFILLYSFL-KRNLSKKVMVFFSSCNSVKFHSELL----RYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV 408 (591)
Q Consensus 334 ~~k~~~l~~~l-~~~~~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~ 408 (591)
.+.+..++-++ ....+..++|.++|+.-+.+.++.+ ..+|+.+..+.|+++...|.... ...|+++|+-
T Consensus 108 GKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpg 181 (844)
T 1tf5_A 108 GKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNN 181 (844)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECch
Confidence 33444444433 3334668999999998887766555 44689999999999987765543 3689999961
Q ss_pred -c------------ccCCCCCCCcEEEE
Q 007743 409 -A------------ARGLDIPAVDWIVQ 423 (591)
Q Consensus 409 -~------------~~GiDip~v~~VI~ 423 (591)
+ ...++...++++|.
T Consensus 182 rlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 182 ELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp HHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred hhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 1 11356677887763
No 382
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.87 E-value=8.4 Score=34.76 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
-.++.|+.|||||+...
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36899999999998643
No 383
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=51.87 E-value=5.5 Score=38.43 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=14.8
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999997743
No 384
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=51.76 E-value=11 Score=29.63 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=32.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQK 384 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 384 (591)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3578999999988899999999999999999999875
No 385
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=51.66 E-value=7.2 Score=34.97 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=20.4
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 125 MTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 125 ~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+..+...+ ....|.-+++.|++|||||...
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 344444332 1234667889999999999774
No 386
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=51.40 E-value=13 Score=36.22 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=12.5
Q ss_pred EEEEccCCCCchHH
Q 007743 142 VLGAARTGSGKTLA 155 (591)
Q Consensus 142 vlv~a~TGsGKTl~ 155 (591)
+++.|+.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67899999999976
No 387
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=51.32 E-value=12 Score=37.30 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=18.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
.|.-+.+.||+|||||... -.+..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll--~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL--GKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH--HHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH--HHHHhhcc
Confidence 4556889999999999874 33444443
No 388
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=51.31 E-value=11 Score=29.34 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=32.7
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQK 384 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 384 (591)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3578999999988899999999999999999999875
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=51.14 E-value=8.6 Score=35.44 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+..+++.|++|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 44679999999999998743
No 390
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=51.10 E-value=11 Score=43.99 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=25.8
Q ss_pred CCcEEEEecChh-hHHHHHHHHHHcCCCeEeccC
Q 007743 349 SKKVMVFFSSCN-SVKFHSELLRYIQVDCFDIHG 381 (591)
Q Consensus 349 ~~~~iVF~~s~~-~~~~l~~~L~~~~~~~~~lh~ 381 (591)
...+.|.+.+.. .+..+...|...++++....+
T Consensus 342 ~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 342 YKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 345888898874 788899999999999776444
No 391
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=51.05 E-value=8.8 Score=45.48 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=21.7
Q ss_pred cCCceEEEEeCchhhhccccHHHHHHHHHhCC
Q 007743 247 YKNLKCLVIDEADRILEANFEEEMRQIMKLLP 278 (591)
Q Consensus 247 ~~~l~~lVlDEah~l~~~~f~~~~~~i~~~l~ 278 (591)
+++-+++|+||+=--+|..-...+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 34567999999987777555555555555443
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=50.69 E-value=7 Score=36.30 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677788999999999965
No 393
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=50.57 E-value=14 Score=29.11 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCC-eEeccCccCH
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQVD-CFDIHGKQKQ 385 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~~ 385 (591)
...+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 3568999999988899999999999995 8889998753
No 394
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=50.46 E-value=3.7 Score=38.77 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
.+.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997643
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=50.17 E-value=6.4 Score=35.66 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998743
No 396
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.16 E-value=7.4 Score=35.48 Aligned_cols=23 Identities=22% Similarity=-0.021 Sum_probs=18.1
Q ss_pred cccCCCcEEEEccCCCCchHHhH
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~ 157 (591)
-+-.|.-+.+.+|+|||||....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 34467778999999999997643
No 397
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=50.11 E-value=7.3 Score=35.49 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
+..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998743
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=49.94 E-value=6.3 Score=34.51 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999764
No 399
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=49.90 E-value=8.2 Score=41.44 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchHH
Q 007743 141 DVLGAARTGSGKTLA 155 (591)
Q Consensus 141 dvlv~a~TGsGKTl~ 155 (591)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999965
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=49.87 E-value=6.9 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+.-+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=49.79 E-value=6.9 Score=33.39 Aligned_cols=15 Identities=33% Similarity=0.268 Sum_probs=13.0
Q ss_pred cEEEEccCCCCchHH
Q 007743 141 DVLGAARTGSGKTLA 155 (591)
Q Consensus 141 dvlv~a~TGsGKTl~ 155 (591)
-.++.+|+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999977
No 402
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.75 E-value=5.2 Score=39.39 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
...+++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999764
No 403
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.71 E-value=7.2 Score=33.99 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
.+++.++.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999997643
No 404
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.51 E-value=15 Score=36.13 Aligned_cols=46 Identities=15% Similarity=-0.018 Sum_probs=25.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCCh
Q 007743 138 VGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTR 184 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptr 184 (591)
.|.-+++.|++|+|||...+-.+.+...... ....+..++++.-..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-GGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-TTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCeEEEEECCC
Confidence 4567899999999999764332222111100 001245677776543
No 405
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=49.38 E-value=6.2 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.021 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
|.-+.+.||+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445678999999999764
No 406
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=49.38 E-value=6.5 Score=34.64 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=49.38 E-value=7.5 Score=35.33 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
+.+++.||.|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999764
No 408
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=49.26 E-value=6.5 Score=35.31 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556889999999999874
No 409
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=49.00 E-value=6.6 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.3
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
-.++.||||||||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999998753
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=48.97 E-value=7.6 Score=35.40 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
+..+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998743
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=48.77 E-value=8 Score=33.94 Aligned_cols=18 Identities=22% Similarity=0.122 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+++.|++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348899999999998743
No 412
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=48.45 E-value=13 Score=46.95 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHhh---ccccCCCcEEEEccCCCCchHHhHH
Q 007743 109 LSQHTFRAIQDMGFQFMTQIQ-ARAV---PPLMVGKDVLGAARTGSGKTLAFLI 158 (591)
Q Consensus 109 l~~~l~~~l~~~~~~~~~~~Q-~~~i---~~il~g~dvlv~a~TGsGKTl~~~l 158 (591)
+...+.+.+.+.|+. +++.+ .+++ ..+.....+++.||||||||.++-+
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445567777788875 44444 3333 3344567899999999999998653
No 413
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=48.38 E-value=7.1 Score=35.38 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999874
No 414
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=48.17 E-value=7.1 Score=34.23 Aligned_cols=16 Identities=25% Similarity=0.032 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-.++.+|+|||||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999763
No 415
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=48.00 E-value=7.4 Score=33.64 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchHHh
Q 007743 140 KDVLGAARTGSGKTLAF 156 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~ 156 (591)
+-+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999874
No 416
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=47.89 E-value=7.7 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+.-+++.|++|||||...
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 417
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=47.82 E-value=15 Score=35.95 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.++-+++.+++|+|||....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34567788999999997743
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.81 E-value=7.2 Score=34.34 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 419
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.75 E-value=61 Score=30.97 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=50.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCcc------ccCCCCCCC
Q 007743 349 SKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVA------ARGLDIPAV 418 (591)
Q Consensus 349 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~GiDip~v 418 (591)
..++||.+|++.-+..++..+... +..+..+||+.+.......+ . ...|+|+|.-. ...+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999888888754 57888999998876544332 2 37899999521 223466677
Q ss_pred cEEEE
Q 007743 419 DWIVQ 423 (591)
Q Consensus 419 ~~VI~ 423 (591)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 420
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=47.56 E-value=8.4 Score=35.81 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677888999999999975
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=47.43 E-value=7.3 Score=34.35 Aligned_cols=20 Identities=35% Similarity=0.212 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.|.-+++.|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668899999999998743
No 422
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=47.35 E-value=10 Score=36.71 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=17.3
Q ss_pred ccCCCcEEEEccCCCCchHHh
Q 007743 136 LMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~ 156 (591)
+-.|.-+.+.||+|||||...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 346788899999999999763
No 423
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=47.28 E-value=8.7 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=17.1
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 007743 137 MVGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~~~ 157 (591)
..+.-+++.|+.|||||...-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHH
Confidence 356778999999999998743
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=47.26 E-value=7.4 Score=34.02 Aligned_cols=19 Identities=21% Similarity=0.062 Sum_probs=11.7
Q ss_pred CCcEEEEccCCCCchHHhH
Q 007743 139 GKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~~ 157 (591)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998743
No 425
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=46.97 E-value=10 Score=33.35 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+.+.||.|||||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 426
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=46.89 E-value=9.9 Score=37.33 Aligned_cols=18 Identities=39% Similarity=0.300 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 578999999999997743
No 427
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=46.61 E-value=25 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=31.4
Q ss_pred CcEEEEe-cChhhHHHHHHHHHHcCCCeEeccCccCH
Q 007743 350 KKVMVFF-SSCNSVKFHSELLRYIQVDCFDIHGKQKQ 385 (591)
Q Consensus 350 ~~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lh~~~~~ 385 (591)
.++|||| .+-..+...+..|...|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 7899999 57777888999999999999999999864
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=46.38 E-value=8 Score=34.58 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999764
No 429
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=46.11 E-value=10 Score=34.67 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
..+-+++.||+||||++..-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44567889999999997753
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=46.07 E-value=9.5 Score=34.84 Aligned_cols=20 Identities=30% Similarity=0.214 Sum_probs=16.8
Q ss_pred ccCCCcEEEEccCCCCchHH
Q 007743 136 LMVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~ 155 (591)
+..|.-+.+.||.|||||..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34678889999999999975
No 431
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=45.99 E-value=12 Score=33.43 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=27.0
Q ss_pred cCCceEEEEeCchhh--hccccHHHHHHHHHhCCCCCccEEEEeccCc
Q 007743 247 YKNLKCLVIDEADRI--LEANFEEEMRQIMKLLPKKDRQTALFSATQT 292 (591)
Q Consensus 247 ~~~l~~lVlDEah~l--~~~~f~~~~~~i~~~l~~~~~q~ll~SAT~~ 292 (591)
..+.+++|+||+..+ .+..|...+..++.. ...+++-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~----~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST----PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC----SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC----CCcEEEEEeecC
Confidence 456789999999877 345566666666653 223554466653
No 432
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=45.90 E-value=10 Score=34.51 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
..+.+.|++|||||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998743
No 433
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.80 E-value=8.2 Score=34.36 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3689999999999764
No 434
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=45.56 E-value=8.1 Score=34.57 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999764
No 435
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=45.49 E-value=61 Score=29.68 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHcCCC-eEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 335 KRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVD-CFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 335 ~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
.|......++... ..+++|++++..-+..+...+...++. +..++|+.. ....|+|+|.
T Consensus 120 GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp THHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 3443333333332 678999999999999998888888888 888888764 2467888884
No 436
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.32 E-value=8.6 Score=33.05 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999874
No 437
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=45.10 E-value=8.6 Score=34.52 Aligned_cols=16 Identities=38% Similarity=0.148 Sum_probs=13.3
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999763
No 438
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=44.92 E-value=9.5 Score=34.29 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678999999999998743
No 439
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.74 E-value=9.8 Score=35.61 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677888999999999975
No 440
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=44.70 E-value=9.8 Score=35.10 Aligned_cols=19 Identities=37% Similarity=0.340 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.+|.|||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678888999999999975
No 441
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=44.46 E-value=21 Score=31.10 Aligned_cols=15 Identities=27% Similarity=-0.017 Sum_probs=12.6
Q ss_pred cEEEEccCCCCchHH
Q 007743 141 DVLGAARTGSGKTLA 155 (591)
Q Consensus 141 dvlv~a~TGsGKTl~ 155 (591)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999975
No 442
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=44.36 E-value=10 Score=35.87 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677889999999999975
No 443
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=44.33 E-value=9.7 Score=36.31 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677788999999999975
No 444
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=44.30 E-value=10 Score=38.97 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
.+++++.+|+|+|||+..
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999764
No 445
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=44.02 E-value=9.7 Score=34.63 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999874
No 446
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=44.02 E-value=20 Score=28.31 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=32.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCC-eEeccCccCH
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQVD-CFDIHGKQKQ 385 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~~ 385 (591)
...+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4678999999988899999999999985 8889999764
No 447
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=43.97 E-value=60 Score=36.23 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=51.3
Q ss_pred hcCCCcEEEEecChhhHHHHHHHH----HHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-c-----c-----
Q 007743 346 RNLSKKVMVFFSSCNSVKFHSELL----RYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-A-----A----- 410 (591)
Q Consensus 346 ~~~~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-~-----~----- 410 (591)
...+..++|.++|..-+.+.++.+ ..+|+.+..+.|+++...|.... ...|+++|+- + -
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~ 222 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAH 222 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhc
Confidence 334668999999988776665554 45699999999999987766554 2689999962 1 1
Q ss_pred --cCCCCCCCcEEEE
Q 007743 411 --RGLDIPAVDWIVQ 423 (591)
Q Consensus 411 --~GiDip~v~~VI~ 423 (591)
..+....++++|.
T Consensus 223 ~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 223 SLDDLVQRGHHYAIV 237 (922)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred cHhhhccCCCCEEEE
Confidence 1355667777663
No 448
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=43.56 E-value=9.4 Score=33.63 Aligned_cols=15 Identities=33% Similarity=0.270 Sum_probs=13.1
Q ss_pred EEEEccCCCCchHHh
Q 007743 142 VLGAARTGSGKTLAF 156 (591)
Q Consensus 142 vlv~a~TGsGKTl~~ 156 (591)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999774
No 449
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=43.55 E-value=9.4 Score=35.55 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
.+..+++.|+.|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568999999999998743
No 450
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=43.45 E-value=9.5 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.5
Q ss_pred EEEEccCCCCchHHhH
Q 007743 142 VLGAARTGSGKTLAFL 157 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~ 157 (591)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998743
No 451
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=43.37 E-value=9.3 Score=35.97 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCchHHhH
Q 007743 140 KDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 140 ~dvlv~a~TGsGKTl~~~ 157 (591)
.-+++.|++|||||...-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 357899999999998743
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=43.31 E-value=12 Score=33.86 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchHHhH
Q 007743 141 DVLGAARTGSGKTLAFL 157 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~~ 157 (591)
.+++.||+||||++..-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36888999999997753
No 453
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=43.24 E-value=9.3 Score=34.61 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999874
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=43.18 E-value=10 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677788999999999965
No 455
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=43.00 E-value=10 Score=35.17 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+.-+++.||.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 456
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=42.78 E-value=11 Score=35.79 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
..|.-+.+.||.|||||+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677788999999999975
No 457
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.77 E-value=11 Score=39.10 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 007743 138 VGKDVLGAARTGSGKTLAFL 157 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~~ 157 (591)
...++++.||+|+|||...-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34689999999999998743
No 458
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.45 E-value=11 Score=35.01 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677788999999999975
No 459
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=42.32 E-value=11 Score=35.43 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3677788999999999975
No 460
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=42.24 E-value=7.9 Score=36.29 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.+.-+++.|++|||||...
T Consensus 31 ~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp SCEEEEEESCGGGTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999764
No 461
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=42.16 E-value=9.4 Score=38.17 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=0.0
Q ss_pred EEEEccCCCCchHHh
Q 007743 142 VLGAARTGSGKTLAF 156 (591)
Q Consensus 142 vlv~a~TGsGKTl~~ 156 (591)
.++.|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 462
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=42.10 E-value=11 Score=35.53 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677788999999999975
No 463
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=42.10 E-value=17 Score=29.64 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=31.6
Q ss_pred CCcEEEEecChhh--HHHHHHHHHHcCCCeEeccCccCH
Q 007743 349 SKKVMVFFSSCNS--VKFHSELLRYIQVDCFDIHGKQKQ 385 (591)
Q Consensus 349 ~~~~iVF~~s~~~--~~~l~~~L~~~~~~~~~lh~~~~~ 385 (591)
..+++|||.+-.. +...+..|...|+.+..+.|++..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 5689999998776 788999999999998889998753
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=42.02 E-value=9.7 Score=35.51 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677788999999999975
No 465
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=42.00 E-value=14 Score=34.53 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchHHh
Q 007743 138 VGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~~ 156 (591)
.|.-+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999764
No 466
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=41.95 E-value=38 Score=36.76 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=49.9
Q ss_pred CcEEEEecChhhHHHHHHHHHHc----CCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeCc-----cccC-C-CCCCC
Q 007743 350 KKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDV-----AARG-L-DIPAV 418 (591)
Q Consensus 350 ~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-i-Dip~v 418 (591)
+++||.++++..+......+... ++.+..++|+.+...+...+. ....|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999998888888777765 789999999986543322221 24789999962 2233 3 56778
Q ss_pred cEEEE
Q 007743 419 DWIVQ 423 (591)
Q Consensus 419 ~~VI~ 423 (591)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 467
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=41.79 E-value=9.9 Score=41.82 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=19.6
Q ss_pred hhccccCCCc--EEEEccCCCCchHHh
Q 007743 132 AVPPLMVGKD--VLGAARTGSGKTLAF 156 (591)
Q Consensus 132 ~i~~il~g~d--vlv~a~TGsGKTl~~ 156 (591)
.+..+++|.| ++.-|+||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788987 456699999999873
No 468
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=41.77 E-value=10 Score=34.67 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999874
No 469
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=41.63 E-value=65 Score=36.09 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=48.4
Q ss_pred hhHHHHHHHH-HHhcCCCcEEEEecChhhHHHHHHHH----HHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC
Q 007743 334 AKRFILLYSF-LKRNLSKKVMVFFSSCNSVKFHSELL----RYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD 407 (591)
Q Consensus 334 ~~k~~~l~~~-l~~~~~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~ 407 (591)
.+.+..++.+ +....+..++|.++|..-+.+.++.+ ..+|+.+..+.|+++...|.... ...|+++|.
T Consensus 104 GKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 104 GKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred chHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 3444444444 33344668999999988777665554 45699999999999987766654 378999996
No 470
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=41.30 E-value=27 Score=29.37 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCC-CeEeccCccC
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQV-DCFDIHGKQK 384 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lh~~~~ 384 (591)
...++||||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 367899999998888899999999998 5889999985
No 471
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=41.17 E-value=23 Score=38.51 Aligned_cols=68 Identities=6% Similarity=0.030 Sum_probs=45.1
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEEEcCccchHHHHHHh-cCCCEEEeCchHHHHHHhcCCCCccCCceE
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIV-KGVNLLVATPGRLLDHLQNTKGFIYKNLKC 252 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~~l~~ 252 (591)
+.++||.+|+++-+..+++.|... +..+..++|. ........+. ...+|||||. .+.. ++++. +.+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcE
Confidence 567999999999999888777643 6778888884 2222222233 3479999994 2332 36666 766
Q ss_pred EE
Q 007743 253 LV 254 (591)
Q Consensus 253 lV 254 (591)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 472
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.01 E-value=12 Score=35.20 Aligned_cols=19 Identities=26% Similarity=0.178 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3677788999999999975
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=40.90 E-value=20 Score=37.74 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=23.0
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHh
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYN 166 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~ 166 (591)
.+-.|.-+++.+|+|||||+....-++.-+..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 34578889999999999998755433444443
No 474
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=40.87 E-value=48 Score=36.68 Aligned_cols=75 Identities=7% Similarity=0.022 Sum_probs=51.0
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHHHh-------hcCCeEEEEEcCccchHHHHHHh---------cCCCEEEeCchHHHH
Q 007743 174 GTGVIVICPTRELAIQTHAVAKDLLK-------YHSQTVGLVIGGSARRGEAERIV---------KGVNLLVATPGRLLD 237 (591)
Q Consensus 174 ~~~~lil~PtreLa~q~~~~~~~~~~-------~~~~~~~~~~gg~~~~~~~~~l~---------~~~~Iiv~Tp~~L~~ 237 (591)
+..+||.+|++.-+..+++.+..... ..+..+..++|+.........+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 56799999999999999988876332 24567888888876554433221 2357999995
Q ss_pred HHhcCCCCccCCceEEEE
Q 007743 238 HLQNTKGFIYKNLKCLVI 255 (591)
Q Consensus 238 ~l~~~~~~~~~~l~~lVl 255 (591)
.+.. ++++..+.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 2222 267778887663
No 475
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=40.86 E-value=19 Score=36.07 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=27.1
Q ss_pred ceEEEEeCchhhhc---cccHHHHHHHHHhCCCCCccEEEEe
Q 007743 250 LKCLVIDEADRILE---ANFEEEMRQIMKLLPKKDRQTALFS 288 (591)
Q Consensus 250 l~~lVlDEah~l~~---~~f~~~~~~i~~~l~~~~~q~ll~S 288 (591)
-.++|+||||.++. ..+...+..+++..++...-+++.|
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~t 304 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVIS 304 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEE
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEc
Confidence 46899999999985 3355677788877776444444433
No 476
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=40.85 E-value=12 Score=35.01 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
..|.-+.+.||.|||||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4677788999999999975
No 477
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=40.74 E-value=11 Score=33.84 Aligned_cols=18 Identities=22% Similarity=-0.088 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchHHh
Q 007743 139 GKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 139 g~dvlv~a~TGsGKTl~~ 156 (591)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778999999999764
No 478
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=40.62 E-value=12 Score=35.07 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677788999999999975
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=40.55 E-value=12 Score=35.47 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677788999999999965
No 480
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=40.51 E-value=34 Score=39.57 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHHHhhcCCccEEEEeC-----ccccC-CCCCCCcEE
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTD-----VAARG-LDIPAVDWI 421 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-iDip~v~~V 421 (591)
.+.++||.+|++.-+...+..+....-.+..++|+++. ++...|+|+|. .+.++ ..+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 46789999999999999999998876688999999872 46688999993 33333 235567777
Q ss_pred EE
Q 007743 422 VQ 423 (591)
Q Consensus 422 I~ 423 (591)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 481
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.35 E-value=7.2 Score=34.24 Aligned_cols=16 Identities=25% Similarity=0.135 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3668899999999764
No 482
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=40.28 E-value=13 Score=35.29 Aligned_cols=19 Identities=42% Similarity=0.462 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677788999999999975
No 483
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=40.19 E-value=11 Score=39.12 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=28.1
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhccccCCCcEEEEccCCCCchHHh
Q 007743 102 TSFDSLGLSQHTFRAIQDMG--FQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAF 156 (591)
Q Consensus 102 ~~f~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 156 (591)
.+|+++.-.....+.|.+.- +..+..++...+ .-.+.+++.||+|+|||+..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~---~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA---RMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC---CCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC---CCCCeEEEECCCCCCHHHHH
Confidence 56888765555544444320 111222211111 12356999999999999764
No 484
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.99 E-value=46 Score=33.04 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=11.3
Q ss_pred EEccCCCCchHHhHHH
Q 007743 144 GAARTGSGKTLAFLIP 159 (591)
Q Consensus 144 v~a~TGsGKTl~~~lp 159 (591)
..+.-|.|||...+--
T Consensus 149 ~s~KGGvGKTT~a~nL 164 (373)
T 3fkq_A 149 TSPCGGVGTSTVAAAC 164 (373)
T ss_dssp ECSSTTSSHHHHHHHH
T ss_pred ECCCCCChHHHHHHHH
Confidence 3457889999876543
No 485
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=39.94 E-value=14 Score=32.77 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 486
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=39.89 E-value=1.3e+02 Score=31.05 Aligned_cols=85 Identities=11% Similarity=0.115 Sum_probs=59.1
Q ss_pred eeEEEecCchhHHHHHHHHHHhcCCCcEEEEecChhhHHHHHHHHHHc-CCCeEec-------cCcc-C----HHHHHHH
Q 007743 325 QQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI-QVDCFDI-------HGKQ-K----QQKRTTT 391 (591)
Q Consensus 325 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~l-------h~~~-~----~~~R~~~ 391 (591)
.+.+.-+....+..++..++.. ...++||.+++...+..++..|... +-.+..+ |... + ...|..+
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~-~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER-HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH-SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 3445556666777777777765 3678999999999999999999875 2223222 1111 1 3568889
Q ss_pred HHHhhcCCccEEEEeCccc
Q 007743 392 FFDFCKAEKGILLCTDVAA 410 (591)
Q Consensus 392 ~~~F~~g~~~vLvaT~~~~ 410 (591)
+..+.+++..|+|+|-.+.
T Consensus 95 l~~L~~~~~~ivv~sv~al 113 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPVNTL 113 (483)
T ss_dssp HHHGGGCCSSEEEEEHHHH
T ss_pred HHHHHhCCCCEEEEEHHHH
Confidence 9999888888999885443
No 487
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=39.79 E-value=11 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 007743 141 DVLGAARTGSGKTLAF 156 (591)
Q Consensus 141 dvlv~a~TGsGKTl~~ 156 (591)
-+.+.|+.|||||.+.
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999864
No 488
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=39.67 E-value=9.7 Score=36.97 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||+|||||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3678899999999999976
No 489
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=39.67 E-value=16 Score=34.10 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
..|.-+.+.||.|||||+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677788999999999976
No 490
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=39.62 E-value=15 Score=31.59 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=15.5
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566678999999999965
No 491
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=39.57 E-value=26 Score=29.13 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCC-CeEeccCccCH
Q 007743 348 LSKKVMVFFSSCNSVKFHSELLRYIQV-DCFDIHGKQKQ 385 (591)
Q Consensus 348 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lh~~~~~ 385 (591)
...++||||.+-..+...+..|...|+ ++..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 467899999998889999999999999 58899999753
No 492
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=39.56 E-value=13 Score=35.12 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCchHH
Q 007743 138 VGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 138 ~g~dvlv~a~TGsGKTl~ 155 (591)
.|.-+.+.||.|||||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 677788999999999975
No 493
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=39.55 E-value=16 Score=34.51 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677788999999999976
No 494
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=39.30 E-value=1.2e+02 Score=30.10 Aligned_cols=91 Identities=8% Similarity=0.084 Sum_probs=53.5
Q ss_pred HhhccccCCCcEEEEccCCC-CchHHhHHHHHHHHHhcccCCCCC-cEEEEEcCChHHHHHHHHHHHHHHhhcCCeEEEE
Q 007743 131 RAVPPLMVGKDVLGAARTGS-GKTLAFLIPAVELLYNAQFAPRNG-TGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLV 208 (591)
Q Consensus 131 ~~i~~il~g~dvlv~a~TGs-GKTl~~~lp~l~~l~~~~~~~~~~-~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~ 208 (591)
..+...+.++.++|.|.||+ |..++ ..|.. .| ..++++.-...-..++...+.......+..+..+
T Consensus 27 ~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~------~g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~ 94 (399)
T 3nzo_A 27 KELQSVVSQSRFLVLGGAGSIGQAVT------KEIFK------RNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTF 94 (399)
T ss_dssp HHHHHHHHTCEEEEETTTSHHHHHHH------HHHHT------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEE
T ss_pred HHHHHHhCCCEEEEEcCChHHHHHHH------HHHHH------CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEE
Confidence 34455678899999998884 65544 33333 24 4566666655544555555544333233566777
Q ss_pred EcCccchHHHHHHh--cCCCEEEeCch
Q 007743 209 IGGSARRGEAERIV--KGVNLLVATPG 233 (591)
Q Consensus 209 ~gg~~~~~~~~~l~--~~~~Iiv~Tp~ 233 (591)
.++.........+. .++++||-..+
T Consensus 95 ~~Dl~d~~~~~~~~~~~~~D~Vih~Aa 121 (399)
T 3nzo_A 95 ALDIGSIEYDAFIKADGQYDYVLNLSA 121 (399)
T ss_dssp CCCTTSHHHHHHHHHCCCCSEEEECCC
T ss_pred EEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 77766655444443 47888886543
No 495
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=39.26 E-value=13 Score=35.45 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 007743 137 MVGKDVLGAARTGSGKTLA 155 (591)
Q Consensus 137 l~g~dvlv~a~TGsGKTl~ 155 (591)
-.|.-+.+.||.|||||+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677788999999999975
No 496
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=39.19 E-value=15 Score=38.48 Aligned_cols=53 Identities=13% Similarity=-0.026 Sum_probs=30.5
Q ss_pred cccCCCcEEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChHHHHHHHHHH
Q 007743 135 PLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVA 194 (591)
Q Consensus 135 ~il~g~dvlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 194 (591)
-+..|.-+++.|++|+|||...+--+.+. .. ..+..+++++-- +-..|+...+
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~-a~-----~~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQW-GT-----AMGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHH-TT-----TSCCCEEEEESS-SCHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHH-HH-----hcCCcEEEEecc-CCHHHHHHHH
Confidence 35567778999999999997643323222 11 125567777642 2234444443
No 497
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=39.07 E-value=95 Score=24.53 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCcEEEEe------cChhhHHHHHHHHHHcCCCeEeccCccCHHHHHHHHH
Q 007743 349 SKKVMVFF------SSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFF 393 (591)
Q Consensus 349 ~~~~iVF~------~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~ 393 (591)
..+++||. ++|..|.....+|...++.+..+.=......+..+..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 57899998 6899999999999999988766654445554444433
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=39.06 E-value=29 Score=30.61 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=21.0
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHhcccCCCCCcEEEEEcCChH
Q 007743 142 VLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRE 185 (591)
Q Consensus 142 vlv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~lil~Ptre 185 (591)
++|.|++|||||.-+. + +.. . +..+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~----~-la~-----~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE----A-LIG-----D-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHH----H-HHC-----S-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHH----H-HHh-----c-CCCeEEEecCCC
Confidence 6889999999995432 2 221 1 344788876543
No 499
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=38.95 E-value=14 Score=36.01 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=0.0
Q ss_pred ccCCCcEEEEccCCCCchHHhHHHHHH
Q 007743 136 LMVGKDVLGAARTGSGKTLAFLIPAVE 162 (591)
Q Consensus 136 il~g~dvlv~a~TGsGKTl~~~lp~l~ 162 (591)
+..|.-+++.+|+|+|||...+..+.+
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
No 500
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=38.35 E-value=12 Score=35.88 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=0.0
Q ss_pred EEEEccCCCCchHHh
Q 007743 142 VLGAARTGSGKTLAF 156 (591)
Q Consensus 142 vlv~a~TGsGKTl~~ 156 (591)
+.+.|++|||||...
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Done!