Query 007744
Match_columns 591
No_of_seqs 125 out of 216
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 14:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02724 CDC45: CDC45-like pro 100.0 5E-163 1E-167 1367.5 50.5 560 25-590 1-620 (622)
2 KOG2475 CDC45 (cell division c 100.0 3E-159 7E-164 1254.3 36.8 566 1-591 2-585 (587)
3 TIGR00644 recJ single-stranded 97.7 0.023 5E-07 64.6 28.2 102 7-115 40-146 (539)
4 COG0608 RecJ Single-stranded D 96.7 0.018 4E-07 64.6 13.3 88 23-117 36-125 (491)
5 PF01368 DHH: DHH family; Int 96.6 0.0052 1.1E-07 56.5 7.0 94 23-118 5-100 (145)
6 PRK11070 ssDNA exonuclease Rec 94.3 0.1 2.3E-06 59.7 7.4 103 8-117 56-164 (575)
7 PF09026 CENP-B_dimeris: Centr 84.2 0.31 6.8E-06 42.6 0.0 9 245-253 60-68 (101)
8 PF03066 Nucleoplasmin: Nucleo 71.7 2 4.3E-05 40.9 1.4 18 101-118 84-101 (149)
9 PRK05427 putative manganese-de 66.9 17 0.00037 38.5 7.2 26 33-58 12-37 (308)
10 cd03028 GRX_PICOT_like Glutare 61.6 20 0.00043 30.6 5.5 74 23-99 7-84 (90)
11 PF04931 DNA_pol_phi: DNA poly 57.2 6 0.00013 47.3 2.0 15 60-74 553-567 (784)
12 COG0618 Exopolyphosphatase-rel 53.4 55 0.0012 35.0 8.3 91 23-115 16-118 (332)
13 cd03418 GRX_GRXb_1_3_like Glut 53.3 47 0.001 26.5 6.1 67 26-99 2-72 (75)
14 KOG1832 HIV-1 Vpr-binding prot 51.8 7 0.00015 46.5 1.2 12 7-18 1189-1200(1516)
15 KOG1189 Global transcriptional 50.1 5.6 0.00012 46.5 0.1 6 9-14 728-733 (960)
16 TIGR00365 monothiol glutaredox 49.7 39 0.00085 29.4 5.4 75 23-100 11-89 (97)
17 PRK14848 deubiquitinase SseL; 46.9 13 0.00028 38.3 2.1 79 39-117 144-225 (317)
18 KOG1832 HIV-1 Vpr-binding prot 42.6 12 0.00027 44.6 1.4 6 110-115 1356-1361(1516)
19 COG1125 OpuBA ABC-type proline 40.0 47 0.001 34.8 5.0 72 306-381 84-187 (309)
20 cd05015 SIS_PGI_1 Phosphogluco 39.0 34 0.00074 32.4 3.6 52 63-117 4-62 (158)
21 PLN02970 serine racemase 37.2 34 0.00075 36.4 3.7 66 27-100 257-324 (328)
22 TIGR02190 GlrX-dom Glutaredoxi 37.2 92 0.002 25.6 5.6 69 23-99 7-78 (79)
23 cd08025 RNR_PFL_like_DUF711 Un 36.7 40 0.00086 37.1 4.0 37 345-382 21-66 (400)
24 cd03029 GRX_hybridPRX5 Glutare 35.8 88 0.0019 25.0 5.1 67 25-99 2-71 (72)
25 PRK06110 hypothetical protein; 34.7 42 0.0009 35.6 3.8 64 26-100 251-314 (322)
26 PRK14538 putative bifunctional 33.5 1.8E+02 0.0038 35.4 9.1 50 215-265 495-550 (838)
27 PF14490 HHH_4: Helix-hairpin- 31.3 31 0.00067 29.9 1.8 34 331-364 2-36 (94)
28 cd02066 GRX_family Glutaredoxi 31.3 1.8E+02 0.0038 22.1 6.1 45 25-73 1-45 (72)
29 cd03027 GRX_DEP Glutaredoxin ( 29.6 1.5E+02 0.0032 23.8 5.5 66 25-97 2-70 (73)
30 PRK05313 hypothetical protein; 29.1 2.7E+02 0.0059 31.2 8.9 37 345-382 25-70 (452)
31 PF08369 PCP_red: Proto-chloro 28.1 44 0.00095 25.3 1.9 34 352-385 4-37 (45)
32 PF04263 TPK_catalytic: Thiami 27.9 55 0.0012 30.0 2.9 73 34-111 43-122 (123)
33 PF02724 CDC45: CDC45-like pro 27.0 68 0.0015 37.5 4.1 52 55-114 55-106 (622)
34 PRK12906 secA preprotein trans 26.6 2.9E+02 0.0062 33.5 9.1 46 6-58 425-470 (796)
35 PRK08638 threonine dehydratase 26.6 76 0.0017 33.9 4.2 65 27-100 258-322 (333)
36 KOG1834 Calsyntenin [Extracell 26.6 61 0.0013 37.7 3.5 35 80-119 827-861 (952)
37 KOG3130 Uncharacterized conser 26.5 37 0.00081 37.2 1.7 10 308-317 414-423 (514)
38 COG5129 MAK16 Nuclear protein 25.6 54 0.0012 33.3 2.5 11 43-53 114-124 (303)
39 PRK13104 secA preprotein trans 24.7 1.2E+02 0.0026 37.0 5.6 48 5-59 428-475 (896)
40 PRK05576 cobalt-precorrin-2 C( 24.4 5E+02 0.011 25.9 9.4 112 9-131 78-195 (229)
41 PF05511 ATP-synt_F6: Mitochon 23.9 39 0.00085 30.0 1.1 33 358-390 60-96 (99)
42 KOG1752 Glutaredoxin and relat 22.9 2.3E+02 0.005 25.3 5.8 70 23-99 13-88 (104)
43 PRK10696 tRNA 2-thiocytidine b 22.6 2.1E+02 0.0045 29.3 6.3 39 22-61 28-66 (258)
44 PRK10954 periplasmic protein d 21.9 3.9E+02 0.0084 26.2 7.9 67 311-391 107-173 (207)
45 TIGR00963 secA preprotein tran 21.6 3.8E+02 0.0083 32.2 8.8 99 6-118 390-491 (745)
46 KOG0073 GTP-binding ADP-ribosy 20.6 1.1E+02 0.0025 29.9 3.6 79 25-118 18-99 (185)
47 CHL00122 secA preprotein trans 20.5 1.3E+02 0.0028 36.5 4.8 50 5-61 408-457 (870)
No 1
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=100.00 E-value=5.2e-163 Score=1367.50 Aligned_cols=560 Identities=39% Similarity=0.654 Sum_probs=481.5
Q ss_pred CEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhCCCCC
Q 007744 25 PLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPK 104 (591)
Q Consensus 25 ~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~~~~~ 104 (591)
||+|+| |+|||||||||||+.|||+|+|+|+|+||+||+||+++++++ ++++++||||||||++||.+||+++++
T Consensus 1 ~Vli~v-~~dvDalcA~kiL~~Llk~d~I~~~l~PV~gy~el~~~~~~~----~~~~~~vilIncGa~~dl~~~l~~~~~ 75 (622)
T PF02724_consen 1 SVLILV-ALDVDALCACKILTSLLKSDNIQYSLVPVSGYSELERAYEEL----DEDIKSVILINCGATVDLEEFLELDED 75 (622)
T ss_pred CEEEEE-cCChHHHHHHHHHHHHHHhcCCCeeEEEeCCHHHHHHHHHHH----hhhhceEEEEecCchhhHHHHhCCCCc
Confidence 699999 599999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cEEEEEcCCCCCccCCCcCCCCcEEEEecCCchhh--hhccccchhHhhhhcccCCC-------CCCCC--CCCCCC---
Q 007744 105 ARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQ--ADLAYDFNVSALAHAIDLGI-------DDEDS--DSDEED--- 170 (591)
Q Consensus 105 ~~iyViDSHRP~~L~Nv~~~~~~v~i~~~~dd~~~--~~~~y~~~~~~~~~~~~~~~-------ede~~--d~d~d~--- 170 (591)
++||||||||||||+|||+.+++|+||.+.+++.+ ..+.|..-..++.++++.++ |+|+| ++++++
T Consensus 76 ~~iyViDshRP~~L~Nv~~~~~~v~v~ddg~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~D~e~d~~~e~~~~~~~ 155 (622)
T PF02724_consen 76 VTIYVIDSHRPWNLDNVFSDNDQVIVFDDGDIEEELQEEPEYRDAYEALEEMPEEEDDEDDEDSDDEDDEEDEESDSSDE 155 (622)
T ss_pred eEEEEEeCCCCccHhhccCCCCcEEEEECCChhhhcchhhhhHHHHHHhhhccccccccccccCcccccccccccccccc
Confidence 99999999999999999995589999933222221 11111100023322222211 11100 000000
Q ss_pred -------CCCccccccCCCccccccccc--cC---CCCh---HHHHHHHHHHHhhcCcccccchHHHHHHHHHHhcccCc
Q 007744 171 -------DSESEGEENEGGSRKRRRVDL--ER---GEDP---EKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTN 235 (591)
Q Consensus 171 -------~ed~d~~d~~~~~~kr~r~~~--~~---~~~~---~~~~~~~~~~yY~~gs~~g~s~s~~~y~La~~l~r~~~ 235 (591)
+++++++++++.+++|+|+.. .. .+++ +++.++.+..||++|||||+|+|++||+|||+|+|+++
T Consensus 156 ~~~~~d~d~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~r~~~~~~~~~i~~yY~~gs~~g~ssa~~~y~La~~l~r~~~ 235 (622)
T PF02724_consen 156 RDSWSDEDEDDDEDDEDEDERSRKRSNSSDSSKKLRRRRRREREEYREEIEKYYSQGSYYGKSSAVLMYELASSLGRDDN 235 (622)
T ss_pred cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhcCceecccHHHHHHHHHHHhCCCch
Confidence 000010112223444444322 10 1111 33455567789999999999999999999999999999
Q ss_pred chhHHHHHhhchHHhhhccchHHHHHHHHHHHHHhhhcCCCCccccccccCCccccCCCcceeecCCCcchhhhhcchhh
Q 007744 236 ELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQEWNLF 315 (591)
Q Consensus 236 d~LW~AIvGlT~q~i~~rI~~~~Y~~~~~~L~~~v~r~~~~~~~~~~~~~~~~~~~~~d~~~I~~~~e~rl~LlRHWsLy 315 (591)
|+|||||||+|+||+++||++++|.+.+..|++||+|+++.++.++....+.+..+++|+++|++++|||||||||||||
T Consensus 236 d~LW~AIvGlT~q~i~~~i~~~~Y~~~~~~L~~eV~rl~~~~~~~~~~~~~~~~~~s~d~~~I~~~~e~rl~LlRHWSLy 315 (622)
T PF02724_consen 236 DLLWLAIVGLTDQYIHERISSERYDRYVPLLQDEVSRLNPSNDSNSVSSEDPTSARSPDDMSIRFEEELRLMLLRHWSLY 315 (622)
T ss_pred HHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccccccccccccccccCCCCceeeeccccceeeeccCcHH
Confidence 99999999999999999999999999999999999999887655555555667888999999999999999999999999
Q ss_pred hhhhcCccchhcccccccchHHHHHHHHHHhCCchhhhhcccccCcHHHHHHHHHHHHhhccccCCCCcccceEEEEecc
Q 007744 316 DSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGY 395 (591)
Q Consensus 316 dSm~~S~yvaskL~lW~~~G~krL~~lLA~MGisL~~~kQ~y~~Md~~~k~~L~~~l~~~a~~ygL~dl~~~sF~r~~Gy 395 (591)
|||+||+||||||+|||++|+||||+|||+|||||+||||+|.|||+++|++|+++|+++||+|||++++|+||+|+|||
T Consensus 316 dSm~~S~yvaskL~lWt~~G~krL~~lLAkMGisL~~~~Q~y~~Md~~~K~~L~~~l~~~a~~ygL~dl~~~sF~r~~Gy 395 (622)
T PF02724_consen 316 DSMYHSSYVASKLKLWTEKGRKRLHKLLAKMGISLKQAQQKYSYMDMELKRELREKLEKYAPKYGLDDLVFPSFVRTYGY 395 (622)
T ss_pred HHHhhchhhHhhcchhhhhhHHHHHHHHHHhCCcHHHHcCCchhCCHHHHHHHHHHHHHHHHhcCCCCceeeeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHhhhhccc-------------------------cCCCccccccHHHHHHhccCCChHHHHHHHHHHH
Q 007744 396 SSRVSAADVVYGVTALLESFV-------------------------TSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAI 450 (591)
Q Consensus 396 ~~~lSA~D~v~al~ALLe~~~-------------------------~~~~~~~~~nF~~A~DaL~~~~~~~L~~gi~~Ak 450 (591)
+++|||+||||||+||||+++ ..++++|++|||.|||||++.|++.|++||++||
T Consensus 396 ~~~lSA~D~v~al~ALLE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nF~~A~DaL~~~~~~~l~~gi~~Ak 475 (622)
T PF02724_consen 396 RGKLSASDVVYALTALLEVGKSSSNVNNASNPENDSDEEEDNEEDEEKEEESWVDNFWRAYDALSRSNIDLLKKGIELAK 475 (622)
T ss_pred CCceeHHHHHHHHHHHhcCCccccccccccCcccccccchhhhhhcccccccHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999872 1135789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCceeecCceEEEEeCCCCCcccccChHHHHHHHHHHHHHHHHhCCCC-----CceEEEeecCC
Q 007744 451 KVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARM-----KPLVCACLAQE 525 (591)
Q Consensus 451 ~lq~ai~r~g~~~i~~~~~I~~~~~fr~~~l~e~~d~~~F~~P~~L~~La~fLl~a~~~~~~~~-----~PlVla~~~~~ 525 (591)
.+||||++||+++|+ +++|+++|+||||+|+||||+++|+||++|++||+||++|+++++++. +||||||++++
T Consensus 476 ~lq~ai~~~~~slie-~~~I~~~~~fr~~~l~dg~d~~~F~~P~~L~~La~~L~~a~~~~~~~~~~~~~~PlVla~l~~~ 554 (622)
T PF02724_consen 476 SLQRAIFRTGSSLIE-KKQIKSLGPFRYCVLKDGPDLELFSHPLALTKLALFLLDALRESSKKRRAKRSLPLVLAALDEE 554 (622)
T ss_pred HHHHHHHHHHHHHhc-cCccccCCCeEEEEeCCchhHHHhCCHHHHHHHHHHHHHHHHHhccccccccccceeEEeecCC
Confidence 999999999999995 679999999999999999999999999999999999999998876433 99999999999
Q ss_pred CCeEEEEeccCCCCCCCCC-CChhhHHHHHHHHHhCCcccccCccceeEEEeccchhHHHHHHHhc
Q 007744 526 PNKVLIVGVCGKPRLGALR-GNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEK 590 (591)
Q Consensus 526 ~~~~lVvGv~~~~~~~~~~-~N~Fg~aF~~aa~~~~a~~~~D~Fdssviei~~eDl~~Fle~L~~~ 590 (591)
+|+||||||+++|..|+.. +|+||+||++||++|||+++||+||||||||+++|+++|+|+|+.+
T Consensus 555 ~~~~lVvGv~~~p~~~~~~~~N~Fg~aF~~aa~~~~a~~~~d~Fdssviei~~eDl~~Fle~L~~~ 620 (622)
T PF02724_consen 555 RGTYLVVGVSAPPISGDSDGKNFFGRAFQQAAEETGARVRHDSFDSSVIEIKKEDLSKFLEALTLS 620 (622)
T ss_pred CCeEEEEEeccCCcccccccccHHHHHHHHHHHHhCCeEecccccceEEEEeHHHHHHHHHHHHhh
Confidence 9999999998889888877 9999999999999999999999999999999999999999999975
No 2
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-159 Score=1254.34 Aligned_cols=566 Identities=41% Similarity=0.627 Sum_probs=487.0
Q ss_pred CCccchHHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCC
Q 007744 1 MVREKKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSET 80 (591)
Q Consensus 1 ~~~~~~~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~ 80 (591)
||+.+.|.+||++|++.+.++| |||+|||| +||||||||||||+|||+|.|||+|+||+||.||++++.++ .++
T Consensus 2 fv~~~~~~~~y~ki~~~~~S~s-~~vlifVs-~DiDALCA~kiLt~Llk~D~iqysivPVsG~~elek~~~e~----~e~ 75 (587)
T KOG2475|consen 2 FVEISDFREFYNKIKEGSRSLS-CPVLIFVS-LDIDALCATKILTHLLKCDHIQYSIVPVSGWSELEKAFLEL----QEQ 75 (587)
T ss_pred cccHHHHHHHHHHHHhccccCC-CcEEEEEe-cChhHHHHHHHHHHHHhccccceeEEEecchHHHHHHHHhh----ccC
Confidence 5777899999999999998886 99999997 99999999999999999999999999999999999999999 789
Q ss_pred ccEEEEEecccccchHHhhCCCCCcEEEEEcCCCCCccCCCcCCCCcEEEEecCCchhhhhccccchhHhhhhcccCCCC
Q 007744 81 QITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAHAIDLGID 160 (591)
Q Consensus 81 ~~~vilINcGg~vDl~~~l~~~~~~~iyViDSHRP~~L~Nv~~~~~~v~i~~~~dd~~~~~~~y~~~~~~~~~~~~~~~e 160 (591)
++++|||||||++||..+|+||....||||||||||||+|||++ +||+|+.+.|++ +..++++..-.+++.+ |+|
T Consensus 76 ~~~iiLiNcG~~vDL~~~L~~P~e~~~fViDSHRP~nl~Niy~~-~qi~~l~d~d~e-e~i~~~e~~fy~~e~~---DEe 150 (587)
T KOG2475|consen 76 IKYIILINCGATVDLTRLLQPPSEDVIFVIDSHRPFNLENIYED-NQIHLLDDGDDE-EQIPDLEDAFYDLESE---DEE 150 (587)
T ss_pred ceEEEEecCCcchhHHHHhCCcccceEEEEeCCCCcchhhcccC-ceEEEecCCChh-hhcchHHHHHHhhhcc---chh
Confidence 99999999999999999999755558999999999999999987 689888444433 3345543111222111 111
Q ss_pred CCCCCCCCCCCCCccccccCCCccccccccccC----CCCh-----HHHHHHHHHHHhhcCcccccchHHHHHHHHHHhc
Q 007744 161 DEDSDSDEEDDSESEGEENEGGSRKRRRVDLER----GEDP-----EKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLR 231 (591)
Q Consensus 161 de~~d~d~d~~ed~d~~d~~~~~~kr~r~~~~~----~~~~-----~~~~~~~~~~yY~~gs~~g~s~s~~~y~La~~l~ 231 (591)
++++- +|| +|.+ |.+...++++|.++.. .|++ +++++.+.++||++|||||+|++++||+|||.|+
T Consensus 151 ~S~~~--eDd-~~ad--E~e~~~~~~~R~e~~~~~r~~krr~rr~~e~e~~~Il~eYy~~gt~~g~ss~~~lfela~ml~ 225 (587)
T KOG2475|consen 151 DSDDV--EDD-EEAD--ESEEYSESRQRLEEEIDQRASKRRERRKWEKERRTILFEYYESGTWHGSSSAVTLFELASMLG 225 (587)
T ss_pred hcCcc--ccc-cccc--ccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcceeecCchHHHHHHHHHHhc
Confidence 11100 111 1100 1011233333332111 0111 2334556678999999999999999999999999
Q ss_pred ccCcchhHHHHHhhchHHhhhccchHHHHHHHHHHHHHhhhcCCCCccccccccCCccccCCCcceeecCCCcchhhhhc
Q 007744 232 KNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQE 311 (591)
Q Consensus 232 r~~~d~LW~AIvGlT~q~i~~rI~~~~Y~~~~~~L~~~v~r~~~~~~~~~~~~~~~~~~~~~d~~~I~~~~e~rl~LlRH 311 (591)
|++||+|||||||+|+|++|.+|+.+.|+.+++.||+||+|++|.+..+.++ ..++.+|++++|||||||||
T Consensus 226 k~~nd~LWlaiVGlT~q~i~~~i~~~~y~~~v~~lq~~V~Rl~p~~~~~~~t--------~~~~~~Itfe~el~L~LyrH 297 (587)
T KOG2475|consen 226 KDNNDLLWLAIVGLTSQMIHKKITEMYYQRCVDLLQDHVNRLTPKNIDNQNT--------LDDCLRITFERELRLMLYRH 297 (587)
T ss_pred cchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--------ccccceEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999998765433221 23469999999999999999
Q ss_pred chhhhhhhcCccchhcccccccchHHHHHHHHHHhCCchhhhhcccccCcHHHHHHHHHHHHhhccccCCCCcccceEEE
Q 007744 312 WNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLR 391 (591)
Q Consensus 312 WsLydSm~~S~yvaskL~lW~~~G~krL~~lLA~MGisL~~~kQ~y~~Md~~~k~~L~~~l~~~a~~ygL~dl~~~sF~r 391 (591)
|||||||+||+||++||++|+++|+||||+|||+|||||.||||+|.+||+++||+|++.|+++||+|||.|+.|.+|+|
T Consensus 298 WsL~dSm~~S~Y~~~klklWs~~G~KrLh~lLA~MGl~L~e~kQkf~aMd~~lk~~l~~~~er~a~~ygl~D~~~~tF~r 377 (587)
T KOG2475|consen 298 WSLFDSMLYSSYVSAKLKLWSENGDKRLHKLLARMGLPLVEAKQKFEAMDLELKRELKSMFERFAPKYGLMDIIFATFTR 377 (587)
T ss_pred ccHHHHHHHHHHHHhHhhhhhhhhHHHHHHHHHHhCCcHHHHHHHhhhcCHHHHHHHHHHHHhhcccccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcccchhhHHHHHHhhhhccccC----CCccccccHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007744 392 LHGYSSRVSAADVVYGVTALLESFVTS----DGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKS 467 (591)
Q Consensus 392 ~~Gy~~~lSA~D~v~al~ALLe~~~~~----~~~~~~~nF~~A~DaL~~~~~~~L~~gi~~Ak~lq~ai~r~g~~~i~~~ 467 (591)
++||++++||||||||+|||||++++. ...+..++|..|+|+|++.|.++|..||++||.+||||+|||.++|+++
T Consensus 378 t~Gy~~~~sAsDvvyA~talLEs~nskt~~~~~~s~ed~f~ea~d~ls~~~ldlL~~g~~lA~~lqrAi~rtg~a~lek~ 457 (587)
T KOG2475|consen 378 TLGYRGKLSASDVVYALTALLESGNSKTIMNSFDSGEDIFLEALDALSRQNLDLLNRGIQLAQKLQRAIFRTGAAALEKS 457 (587)
T ss_pred hccccccccHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999996531 2356689999999999999999999999999999999999999999755
Q ss_pred CceeecCceEEEEeCCCCCcccccChHHHHHHHHHHHHHHHHhCCC--CCceEEEeecC--CCCeEEEEeccCCCCCCCC
Q 007744 468 GAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGAR--MKPLVCACLAQ--EPNKVLIVGVCGKPRLGAL 543 (591)
Q Consensus 468 ~~I~~~~~fr~~~l~e~~d~~~F~~P~~L~~La~fLl~a~~~~~~~--~~PlVla~~~~--~~~~~lVvGv~~~~~~~~~ 543 (591)
+|+++|+||||+++||||+++|.+|++|++||.||++|+++++++ .+|||+|||.+ ..|+++||||+|.+..++.
T Consensus 458 -~I~s~r~fr~~~l~egpD~~~f~~P~aL~~l~~fli~a~~e~~~~r~~lPlv~a~pl~~~~~G~~~vvgv~~~~~~~~~ 536 (587)
T KOG2475|consen 458 -LIISLRPFRLCSLQEGPDLDLFSYPLALTKLAGFLIRAFAESEKGRTLLPLVAACPLEGLSAGTLLVVGVMPETDDSDD 536 (587)
T ss_pred -hhhcCCceEEEEeccCccHHhhcCHHHHHHHHHHHHHHHHhhhccccccchhhhccccccccceEEEeccCCccccccc
Confidence 999999999999999999999999999999999999999887664 59999999998 7799999999977665543
Q ss_pred -CCChhhHHHHHHHHHhCCcccccCccceeEEEeccchhHHHHHHHhcC
Q 007744 544 -RGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL 591 (591)
Q Consensus 544 -~~N~Fg~aF~~aa~~~~a~~~~D~Fdssviei~~eDl~~Fle~L~~~~ 591 (591)
.+|+||+|||+||++|+|...||+||+||||++++|+++|+++|+.+|
T Consensus 537 ~~~N~FG~AFe~aa~~T~a~~~~d~FesSviel~~sdl~~FL~~Lt~~l 585 (587)
T KOG2475|consen 537 SLKNFFGRAFEQAAQETSALLLQDYFESSVIELRASDLGSFLESLTVKL 585 (587)
T ss_pred chhhhHHHHHHHHHhhCchHHHHHhhhhHHHHHhHhhhhhHHHHHHHHh
Confidence 379999999999999999999999999999999999999999999875
No 3
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=97.72 E-value=0.023 Score=64.58 Aligned_cols=102 Identities=20% Similarity=0.294 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEE-e---cCChHHHHHhhccccCCCCCCcc
Q 007744 7 LDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACY-P---VSSFQEIHKYAGPNLGSSSETQI 82 (591)
Q Consensus 7 ~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~-P---V~gy~eL~~~~~e~~~~~~~~~~ 82 (591)
...+.+.|.+.-.+ ..+|+|+- -.|+|++||+-+|...|+.=+....++ | -.||.=.....++.. .+...
T Consensus 40 ~~~a~~~i~~~i~~--~~~I~I~g-h~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~---~~~~~ 113 (539)
T TIGR00644 40 MEKAVERIIEAIEN--NEKILIFG-DYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAI---ENGVS 113 (539)
T ss_pred HHHHHHHHHHHHhc--CCeEEEEE-ccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHH---hcCCC
Confidence 45566666543332 46899997 589999999999999999877665443 3 144542333334432 23457
Q ss_pred EEEEEecccccchH-HhhCCCCCcEEEEEcCCCC
Q 007744 83 TILLINWGSHRDLK-RVLNLGPKARVFVVDSHRP 115 (591)
Q Consensus 83 ~vilINcGg~vDl~-~~l~~~~~~~iyViDSHRP 115 (591)
.+|.+.||..--.. +.+ ...++.+.|+|-|-|
T Consensus 114 LiI~vD~G~~~~~~~~~~-~~~g~~vIviDHH~~ 146 (539)
T TIGR00644 114 LIITVDNGISAHEEIDYA-KELGIDVIVTDHHEP 146 (539)
T ss_pred EEEEeCCCcccHHHHHHH-HhcCCCEEEECCCCC
Confidence 89999999874222 222 223678999999977
No 4
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.018 Score=64.57 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHH-HHHhhccccCCCCCCccEEEEEecccc-cchHHhhC
Q 007744 23 DSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQE-IHKYAGPNLGSSSETQITILLINWGSH-RDLKRVLN 100 (591)
Q Consensus 23 ~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~e-L~~~~~e~~~~~~~~~~~vilINcGg~-vDl~~~l~ 100 (591)
+.+|+|+. -+|+|.+|++-||...|++-++.+.+.++....+ .- +.+... .+....+|.+-||.. .+-.....
T Consensus 36 ~~~I~I~~-d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g-~~~~~~---~~~~~liItvD~G~~~~~~i~~~~ 110 (491)
T COG0608 36 GEKILIYG-DYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG-AIRKLK---EEGADLIITVDNGSGSLEEIARAK 110 (491)
T ss_pred CCEEEEEE-ecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch-HHHHHH---hcCCCEEEEECCCcccHHHHHHHH
Confidence 56899997 5999999999999999999999999999888776 21 112221 345688999999976 55555443
Q ss_pred CCCCcEEEEEcCCCCCc
Q 007744 101 LGPKARVFVVDSHRPIH 117 (591)
Q Consensus 101 ~~~~~~iyViDSHRP~~ 117 (591)
..+..|.|+|-| |-.
T Consensus 111 -~~g~~vIVtDHH-~~~ 125 (491)
T COG0608 111 -ELGIDVIVTDHH-PPG 125 (491)
T ss_pred -hCCCcEEEECCC-CCC
Confidence 346899999999 653
No 5
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=96.64 E-value=0.0052 Score=56.51 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCEEEEecCC--ChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhC
Q 007744 23 DSPLLIFPSTS--DVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLN 100 (591)
Q Consensus 23 ~~~VlI~Vs~~--DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~ 100 (591)
..+|+|+.- . |.|++||+-+|..+|+.-+.....+|+.............. ........+|++-||..--....+.
T Consensus 5 ~~~i~i~~H-~~~D~Dgl~Sa~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ii~vD~~~~~~~~~~~~ 82 (145)
T PF01368_consen 5 AERILIVGH-INPDADGLGSAIALAKILKRLGKEVTVIPIPEGPPHEYFLFVLK-YFEMNEDLIILVDCGSPDRDGEKLE 82 (145)
T ss_dssp TSEEEEEEB-SS-SHHHHHHHHHHHHHHHHTTCTEEEEEECSSTCGHHHHHHHH-HTTHHHSEEEEES-SSGGGSGTTGG
T ss_pred CCEEEEEcc-CCCCchHHHHHHHHHHHHHHcCCCceEEecCCCCcchhhhhhhh-hhcccceEEEEecCCccccchHHHH
Confidence 457888874 7 99999999999999999999888888877764433321110 0011237999999988865555444
Q ss_pred CCCCcEEEEEcCCCCCcc
Q 007744 101 LGPKARVFVVDSHRPIHL 118 (591)
Q Consensus 101 ~~~~~~iyViDSHRP~~L 118 (591)
...+..+.|||-|+|-..
T Consensus 83 ~~~~~~viiiDHH~~~~~ 100 (145)
T PF01368_consen 83 ELKGIKVIIIDHHQPGEE 100 (145)
T ss_dssp GTSCSEEEEEESSSSBSS
T ss_pred hcCCCCEEEeCCCCCCcc
Confidence 334578889999988765
No 6
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=94.26 E-value=0.1 Score=59.68 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcc--eeEEe---cCChHHHHHhhccccCCCCCCcc
Q 007744 8 DSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVR--YACYP---VSSFQEIHKYAGPNLGSSSETQI 82 (591)
Q Consensus 8 ~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~--y~l~P---V~gy~eL~~~~~e~~~~~~~~~~ 82 (591)
..+-++|.+.-.. +.+|+|+- -+|||.+||+-||...|+.-+++ ...+| -.||.==..+.+++. .+...
T Consensus 56 ~~a~~ri~~ai~~--~e~I~I~g-DyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~---~~~~~ 129 (575)
T PRK11070 56 EKAVELLYNALRE--GTRIIVVG-DFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAH---ARGAQ 129 (575)
T ss_pred HHHHHHHHHHHHC--CCEEEEEE-ecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHH---hcCCC
Confidence 4445555443332 56899997 59999999999999999988773 34678 677753345555553 23568
Q ss_pred EEEEEecccc-cchHHhhCCCCCcEEEEEcCCCCCc
Q 007744 83 TILLINWGSH-RDLKRVLNLGPKARVFVVDSHRPIH 117 (591)
Q Consensus 83 ~vilINcGg~-vDl~~~l~~~~~~~iyViDSHRP~~ 117 (591)
.||.+.||-+ ++..+... .-++.|.|.|-|.|-.
T Consensus 130 LiItvD~Gi~~~e~i~~a~-~~gidvIVtDHH~~~~ 164 (575)
T PRK11070 130 LIVTVDNGISSHAGVAHAH-ALGIPVLVTDHHLPGE 164 (575)
T ss_pred EEEEEcCCcCCHHHHHHHH-HCCCCEEEECCCCCCC
Confidence 9999999988 33333332 1378899999999853
No 7
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=84.18 E-value=0.31 Score=42.56 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.2
Q ss_pred hchHHhhhc
Q 007744 245 LTDQFVHER 253 (591)
Q Consensus 245 lT~q~i~~r 253 (591)
||++.|..|
T Consensus 60 ltSf~id~~ 68 (101)
T PF09026_consen 60 LTSFPIDDK 68 (101)
T ss_dssp HCTS---HH
T ss_pred hhccchhHh
Confidence 555555544
No 8
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=71.73 E-value=2 Score=40.86 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=11.5
Q ss_pred CCCCcEEEEEcCCCCCcc
Q 007744 101 LGPKARVFVVDSHRPIHL 118 (591)
Q Consensus 101 ~~~~~~iyViDSHRP~~L 118 (591)
+.+-|+|.+.=+.-|.|+
T Consensus 84 ~~ppVtf~L~~GsGPVhi 101 (149)
T PF03066_consen 84 ITPPVTFRLKCGSGPVHI 101 (149)
T ss_dssp ESSSEEEEEEESSS-EEE
T ss_pred cCCCEEEEEEecCCCEEe
Confidence 445677777777777775
No 9
>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=66.86 E-value=17 Score=38.49 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHhHhcCCcceeEE
Q 007744 33 SDVDSLCALKIILHVLESDSVRYACY 58 (591)
Q Consensus 33 ~DvDAlCA~rIL~~Llk~D~I~y~l~ 58 (591)
+|.||||++--|..++++-+....++
T Consensus 12 PD~DaigSalala~~l~~~g~~~~~~ 37 (308)
T PRK05427 12 PDTDSICSAIAYAYLKKALGLDAEAV 37 (308)
T ss_pred CCHHHHHHHHHHHHHHHHhCCceEEE
Confidence 79999999999999998766554444
No 10
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=61.60 E-value=20 Score=30.59 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCCEEEEec-CCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEe---cccccchHHh
Q 007744 23 DSPLLIFPS-TSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLIN---WGSHRDLKRV 98 (591)
Q Consensus 23 ~~~VlI~Vs-~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilIN---cGg~vDl~~~ 98 (591)
.++|+||.. +++...-..|+-+..+|+.-+|.|..+.|..-.++.+...+.. ....+- +|+|| .||.-++.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~--g~~tvP-~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS--NWPTFP-QLYVNGELVGGCDIVKEM 83 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh--CCCCCC-EEEECCEEEeCHHHHHHH
Confidence 468999963 2566677789999999999999999999988777777777662 112222 24555 4666666655
Q ss_pred h
Q 007744 99 L 99 (591)
Q Consensus 99 l 99 (591)
.
T Consensus 84 ~ 84 (90)
T cd03028 84 H 84 (90)
T ss_pred H
Confidence 4
No 11
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=57.20 E-value=6 Score=47.26 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=9.7
Q ss_pred cCChHHHHHhhcccc
Q 007744 60 VSSFQEIHKYAGPNL 74 (591)
Q Consensus 60 V~gy~eL~~~~~e~~ 74 (591)
|.-..||...|+...
T Consensus 553 ~~~l~dl~~c~~~~~ 567 (784)
T PF04931_consen 553 VDVLDDLQICYEKAF 567 (784)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556667777776554
No 12
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=53.45 E-value=55 Score=35.00 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCEEEEec-CCChhHHHHHHHHHHhHhcCCcceeEEecC--ChHHHHHhhccc---cC-C---CCCCccEEEEEecccc
Q 007744 23 DSPLLIFPS-TSDVDSLCALKIILHVLESDSVRYACYPVS--SFQEIHKYAGPN---LG-S---SSETQITILLINWGSH 92 (591)
Q Consensus 23 ~~~VlI~Vs-~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~--gy~eL~~~~~e~---~~-~---~~~~~~~vilINcGg~ 92 (591)
..+++|++- .+|+|||.++--|+.|++.-++.=++.++. ...+-...+..+ .. . ...+...+|++-|.+.
T Consensus 16 ~~~i~i~~H~nPD~DalgSa~aL~~ll~~~~~~~~v~~~G~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~iivDt~~~ 95 (332)
T COG0618 16 HDKILILTHENPDPDALGSALALAELLKDLGKNKEVLYVGPITHPENRAFLNLLGDELERIEDDPLDDYDLVIIVDTANL 95 (332)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHhCCCceEEEecccCCcchHhhhhhcccccccccCCCcccCCEEEEECCCCC
Confidence 346666641 389999999999999999999866666665 344333332221 10 0 0124456777777653
Q ss_pred --cchHHhhCCCCCcEEEEEcCCCC
Q 007744 93 --RDLKRVLNLGPKARVFVVDSHRP 115 (591)
Q Consensus 93 --vDl~~~l~~~~~~~iyViDSHRP 115 (591)
+........+ ..+.|||-|-+
T Consensus 96 ~ri~~~~~~~~~--~~~ivIDHH~~ 118 (332)
T COG0618 96 PRIGDQELLLDS--KKVIVIDHHPG 118 (332)
T ss_pred CCcccccccccC--CceEEEeCCCC
Confidence 2222222111 46677776655
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=53.27 E-value=47 Score=26.51 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=46.2
Q ss_pred EEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCC-CccEEEEEe---cccccchHHhh
Q 007744 26 LLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSE-TQITILLIN---WGSHRDLKRVL 99 (591)
Q Consensus 26 VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~-~~~~vilIN---cGg~vDl~~~l 99 (591)
|.||.. ..| .-|+-...+|+..+|.|..+-|....+......+.. ... .+ =+|+|| +||.-|+.++-
T Consensus 2 i~ly~~-~~C---p~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~--~~~~~v-P~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIYTK-PNC---PYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS--GGRRTV-PQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred EEEEeC-CCC---hHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh--CCCCcc-CEEEECCEEEeChHHHHHHH
Confidence 677764 454 567778888889999999999998766655544432 111 23 356788 88888887764
No 14
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.75 E-value=7 Score=46.52 Aligned_cols=12 Identities=25% Similarity=0.146 Sum_probs=4.6
Q ss_pred HHHHHHHHHhhh
Q 007744 7 LDSFYTRLRESA 18 (591)
Q Consensus 7 ~~~~Y~~I~~~~ 18 (591)
+.+|-+..+.++
T Consensus 1189 ~vkFsn~~q~r~ 1200 (1516)
T KOG1832|consen 1189 AVKFSNSLQFRA 1200 (1516)
T ss_pred eeehhhhHHHHH
Confidence 333334443333
No 15
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=50.10 E-value=5.6 Score=46.48 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.2
Q ss_pred HHHHHH
Q 007744 9 SFYTRL 14 (591)
Q Consensus 9 ~~Y~~I 14 (591)
.|-++|
T Consensus 728 sF~~kv 733 (960)
T KOG1189|consen 728 SFAEKV 733 (960)
T ss_pred HHHHHH
Confidence 333333
No 16
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=49.66 E-value=39 Score=29.39 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCCEEEEec-CCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEe---cccccchHHh
Q 007744 23 DSPLLIFPS-TSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLIN---WGSHRDLKRV 98 (591)
Q Consensus 23 ~~~VlI~Vs-~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilIN---cGg~vDl~~~ 98 (591)
..+|+||.- ..+...-.-|+-...+|+.-+|+|..+-|..-.++.....+.. +..--=.|+|| .||.-||.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t---g~~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS---NWPTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh---CCCCCCEEEECCEEEeChHHHHHH
Confidence 458999963 1234445678889999999999999999976666666666652 22112236777 7888888887
Q ss_pred hC
Q 007744 99 LN 100 (591)
Q Consensus 99 l~ 100 (591)
.+
T Consensus 88 ~~ 89 (97)
T TIGR00365 88 YQ 89 (97)
T ss_pred HH
Confidence 54
No 17
>PRK14848 deubiquitinase SseL; Provisional
Probab=46.90 E-value=13 Score=38.28 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHhHhcCCccee---EEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhCCCCCcEEEEEcCCCC
Q 007744 39 CALKIILHVLESDSVRYA---CYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRP 115 (591)
Q Consensus 39 CA~rIL~~Llk~D~I~y~---l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~~~~~~~iyViDSHRP 115 (591)
||.+=+.+..+.=.|-|- ++|-++-.-|+.+.-|.++..+-.-.-|++||-||..=|..|-.+-+.+++.||-|||-
T Consensus 144 ~~~q~~~~~~~~~~VNyP~GL~~P~s~~~~L~~~L~E~i~~s~~~~nevF~INtg~HWil~~~~Ki~~kiKC~iFNs~~~ 223 (317)
T PRK14848 144 AATQGLVQESPLLSVNYPIGLIHPTTKENILSTQLLEKIAQSGLSHNEVFLINTGDHWLLCLFYKLAEKIKCLIFNTYYD 223 (317)
T ss_pred HHhhccccCCccceecCCceeeecCccchhHHHHHHhhhhhcCCCcceEEEecCCCcEEEEEhHHhhhhceEEEeecHhh
Confidence 444444555554555553 68999999999998888743233445679999999998888877778999999999998
Q ss_pred Cc
Q 007744 116 IH 117 (591)
Q Consensus 116 ~~ 117 (591)
.+
T Consensus 224 l~ 225 (317)
T PRK14848 224 LN 225 (317)
T ss_pred hh
Confidence 87
No 18
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.55 E-value=12 Score=44.57 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.4
Q ss_pred EcCCCC
Q 007744 110 VDSHRP 115 (591)
Q Consensus 110 iDSHRP 115 (591)
|+..||
T Consensus 1356 i~v~R~ 1361 (1516)
T KOG1832|consen 1356 IPVDRC 1361 (1516)
T ss_pred eecccc
Confidence 333443
No 19
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=40.00 E-value=47 Score=34.81 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=59.8
Q ss_pred hhhhhcchhhhhhhcCccchhccccccc-chHHHHHHHHHHhCCchhhhhc-----------------------------
Q 007744 306 LMLLQEWNLFDSMLCSSYIATKLKTWSD-NGMKKLKLLLARMGFALVDCQQ----------------------------- 355 (591)
Q Consensus 306 l~LlRHWsLydSm~~S~yvaskL~lW~~-~G~krL~~lLA~MGisL~~~kQ----------------------------- 355 (591)
.-|+=||+..+-+- +.-+|+=|.. +=++|..+||..+|++..+-.+
T Consensus 84 igLFPh~Tv~eNIa----~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 84 IGLFPHLTVAENIA----TVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred cccCCCccHHHHHH----hhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 46888999999876 5567888987 7889999999999998865443
Q ss_pred --ccccCcHHHHHHHHHHHHhhccccCC
Q 007744 356 --KFQYMNLEVKRKMKDEFERFLPEYGL 381 (591)
Q Consensus 356 --~y~~Md~~~k~~L~~~l~~~a~~ygL 381 (591)
+|..+|+-.|++|.+.|.+.=.++|.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~k 187 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGK 187 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCC
Confidence 56688999999999999988888876
No 20
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=38.95 E-value=34 Score=32.40 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=35.3
Q ss_pred hHHHHHhhccccCCCC-CCccEEEEEecccccc----hHHhhC-CC-CCcEEEEEcCCCCCc
Q 007744 63 FQEIHKYAGPNLGSSS-ETQITILLINWGSHRD----LKRVLN-LG-PKARVFVVDSHRPIH 117 (591)
Q Consensus 63 y~eL~~~~~e~~~~~~-~~~~~vilINcGg~vD----l~~~l~-~~-~~~~iyViDSHRP~~ 117 (591)
+.++++..++.. . ..++.|+++||||.-- +.+++. +. ....++++|+.-|..
T Consensus 4 ~~~i~~~~~~i~---~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~ 62 (158)
T cd05015 4 LERIKEFAEKVR---SGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDD 62 (158)
T ss_pred HHHHHHHHHHHh---cCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHH
Confidence 455666666663 3 3689999999999644 233332 21 367789999999865
No 21
>PLN02970 serine racemase
Probab=37.20 E-value=34 Score=36.39 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=37.1
Q ss_pred EEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCC--CCCccEEEEEecccccchHHhhC
Q 007744 27 LIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSS--SETQITILLINWGSHRDLKRVLN 100 (591)
Q Consensus 27 lI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~--~~~~~~vilINcGg~vDl~~~l~ 100 (591)
++-| .|-+++.|+|.|.. ...|. +=|-++ .-|.-+.+...... .++-+.|++|-|||++|+..+++
T Consensus 257 ~v~V--~d~e~~~a~~~la~---~~gi~--ve~s~a-a~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~~~~~~~~ 324 (328)
T PLN02970 257 VITV--DDKEIIEAMKLCYE---RLKVV--VEPSGA-IGLAAALSDSFRSNPAWKGCKNVGIVLSGGNVDLGVLWE 324 (328)
T ss_pred EEEE--CHHHHHHHHHHHHH---hcCcE--EeHHHH-HHHHHHHhCcccccccccCCCeEEEEECCCCCCHHHHHH
Confidence 5555 48999999988752 23332 112222 12222222221000 11237999999999999998865
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=37.18 E-value=92 Score=25.61 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEe---cccccchHHhh
Q 007744 23 DSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLIN---WGSHRDLKRVL 99 (591)
Q Consensus 23 ~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilIN---cGg~vDl~~~l 99 (591)
..+|.||.. . .-+-|+-...+|+..+|.|..+.|....+.....+.. ....+=. |+|| .||.-||.++|
T Consensus 7 ~~~V~ly~~-~---~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~---g~~~vP~-i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 7 PESVVVFTK-P---GCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVT---GATTVPQ-VFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCEEEEEC-C---CCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHH---CCCCcCe-EEECCEEEcCHHHHHHHh
Confidence 467898874 3 4467888888899999999999998765543322211 1112222 3444 56777776665
No 23
>cd08025 RNR_PFL_like_DUF711 Uncharacterized proteins with similarity to Ribonucleotide reductase and Pyruvate formate lyase. This subfamily contains Streptococcus pneumoniae Sp0239 and similar uncharacterized proteins. Sp0239 is structurally similar to ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL), which are believed to have diverged from a common ancestor. RNR and PFL possess a ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. PFL is an essential enzyme in anaerobic bacteria that catalyzes the conversion of pyruvate and CoA to acteylCoA and formate.
Probab=36.75 E-value=40 Score=37.10 Aligned_cols=37 Identities=19% Similarity=0.568 Sum_probs=23.8
Q ss_pred HhCCchhhhhcc---------cccCcHHHHHHHHHHHHhhccccCCC
Q 007744 345 RMGFALVDCQQK---------FQYMNLEVKRKMKDEFERFLPEYGLT 382 (591)
Q Consensus 345 ~MGisL~~~kQ~---------y~~Md~~~k~~L~~~l~~~a~~ygL~ 382 (591)
.|||||..|.-. |.-+. ..=+.|.+..++...+||..
T Consensus 21 T~gisL~~c~~~d~~~~~~~i~~ki~-~~a~~lv~~~~~i~~e~Gip 66 (400)
T cd08025 21 TLGISLLDCIDPDIDELCENIYEKIT-SAAKRLVETVEEVSSELGVP 66 (400)
T ss_pred eeeecccccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCe
Confidence 689999888764 22221 23344666777778888874
No 24
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=35.76 E-value=88 Score=24.97 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=41.9
Q ss_pred CEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEe---cccccchHHhh
Q 007744 25 PLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLIN---WGSHRDLKRVL 99 (591)
Q Consensus 25 ~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilIN---cGg~vDl~~~l 99 (591)
+|.||.. . .-+-|+-...+|+.-+|+|..++|..-.+.. ...... ....+=. |+|| .||.-||.++|
T Consensus 2 ~v~lys~-~---~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~-~~~~~~--g~~~vP~-ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTK-P---GCPFCARAKAALQENGISYEEIPLGKDITGR-SLRAVT--GAMTVPQ-VFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEEC-C---CCHHHHHHHHHHHHcCCCcEEEECCCChhHH-HHHHHh--CCCCcCe-EEECCEEEeCHHHHHHHh
Confidence 5777764 3 3356666778888899999999998655332 222221 1112222 4666 68888888876
No 25
>PRK06110 hypothetical protein; Provisional
Probab=34.67 E-value=42 Score=35.60 Aligned_cols=64 Identities=8% Similarity=-0.017 Sum_probs=40.4
Q ss_pred EEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhC
Q 007744 26 LLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLN 100 (591)
Q Consensus 26 VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~ 100 (591)
-.+-| .|-+++-|+|.|- +...|.+.--...+...+.+..+.. .-+.|++|.|||++|+..+-+
T Consensus 251 ~~~~V--sd~e~~~a~~~l~---~~~gi~~e~ssaa~laa~~~~~~~~------~~~~Vv~i~tGgn~d~~~~~~ 314 (322)
T PRK06110 251 RIVRV--TDDEVAAAMRAYF---TDTHNVAEGAGAAALAAALQERERL------AGKRVGLVLSGGNIDRAVFAR 314 (322)
T ss_pred eEEEE--CHHHHHHHHHHHH---HHcCcEEehHHHHHHHHHHhChhhh------CCCcEEEEECCCCCCHHHHHH
Confidence 35565 4889998988775 4455555533333344444332222 235899999999999987644
No 26
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=33.46 E-value=1.8e+02 Score=35.42 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=34.0
Q ss_pred cccchHHHHHHHHHHhccc------CcchhHHHHHhhchHHhhhccchHHHHHHHHH
Q 007744 215 HGKPSGCLMYDLSHSLRKN------TNELLWLACVSLTDQFVHERLTDERYQAGVME 265 (591)
Q Consensus 215 ~g~s~s~~~y~La~~l~r~------~~d~LW~AIvGlT~q~i~~rI~~~~Y~~~~~~ 265 (591)
|+.|+|-+++++...++.. ....|-.+|+.=|-.|.. +.++.++......
T Consensus 495 ~ASST~ELV~Ell~~~~~~i~l~~~eAt~LyaGI~tDTg~F~~-~Tt~rTFeaAA~L 550 (838)
T PRK14538 495 SASSTVELLVELMGFLEKEIHITAFEASIMYAGILIDTNAFIY-RTSSRTFEVASKL 550 (838)
T ss_pred CcCcHHHHHHHHHHHcCCCCCCCHHHHHHHHhHHHHHcCCccc-CCCHHHHHHHHHH
Confidence 5667777888887655533 345677888877777777 5777777655433
No 27
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=31.32 E-value=31 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.414 Sum_probs=21.4
Q ss_pred ccc-chHHHHHHHHHHhCCchhhhhcccccCcHHH
Q 007744 331 WSD-NGMKKLKLLLARMGFALVDCQQKFQYMNLEV 364 (591)
Q Consensus 331 W~~-~G~krL~~lLA~MGisL~~~kQ~y~~Md~~~ 364 (591)
|++ +|..++..+|.++|||...++.-|...-.+.
T Consensus 2 ~~~~~~~~~~~~~L~~~gl~~~~a~kl~~~yg~~a 36 (94)
T PF14490_consen 2 WKENRGLRELMAFLQEYGLSPKLAMKLYKKYGDDA 36 (94)
T ss_dssp -------HHHHHHHHHTT--HHHHHHHHHHH-TTH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHH
Confidence 555 7899999999999999999999887654433
No 28
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=31.26 E-value=1.8e+02 Score=22.10 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=35.5
Q ss_pred CEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccc
Q 007744 25 PLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPN 73 (591)
Q Consensus 25 ~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~ 73 (591)
+|.+|.+ ..+ .-|+-...+|+.-+|.|..+.|....++...+.+.
T Consensus 1 ~v~ly~~-~~C---p~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~ 45 (72)
T cd02066 1 KVVVFSK-STC---PYCKRAKRLLESLGIEFEEIDILEDGELREELKEL 45 (72)
T ss_pred CEEEEEC-CCC---HHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHH
Confidence 4777864 443 37888888899999999999999988877777665
No 29
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=29.57 E-value=1.5e+02 Score=23.78 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=44.9
Q ss_pred CEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEe---cccccchHH
Q 007744 25 PLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLIN---WGSHRDLKR 97 (591)
Q Consensus 25 ~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilIN---cGg~vDl~~ 97 (591)
+|.||.. +.+ ..|+-...+|+.-+|+|..+.|..-.+....+.+.. ....+ =+|+|| .||.-||.+
T Consensus 2 ~v~ly~~-~~C---~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~--g~~~v-P~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSR-LGC---EDCTAVRLFLREKGLPYVEINIDIFPERKAELEERT--GSSVV-PQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEec-CCC---hhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh--CCCCc-CEEEECCEEEeCHHHHHh
Confidence 4677753 444 678999999999999999999998777666666653 11222 344555 366655554
No 30
>PRK05313 hypothetical protein; Provisional
Probab=29.15 E-value=2.7e+02 Score=31.23 Aligned_cols=37 Identities=24% Similarity=0.570 Sum_probs=23.8
Q ss_pred HhCCchhhhhcc---------cccCcHHHHHHHHHHHHhhccccCCC
Q 007744 345 RMGFALVDCQQK---------FQYMNLEVKRKMKDEFERFLPEYGLT 382 (591)
Q Consensus 345 ~MGisL~~~kQ~---------y~~Md~~~k~~L~~~l~~~a~~ygL~ 382 (591)
.|||||..|.-. |.-+. ..=++|.+..++...+||..
T Consensus 25 T~gisL~~c~~~d~~~~~~~i~~ki~-~~A~~lv~~~~~i~~e~Gip 70 (452)
T PRK05313 25 TMGISLLDCIDPDLDRAAEKIYDKIT-TKAKNLVEVAEEIEREYGIP 70 (452)
T ss_pred cceecccccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCe
Confidence 699999888764 22221 22344666777778888874
No 31
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=28.06 E-value=44 Score=25.31 Aligned_cols=34 Identities=18% Similarity=0.468 Sum_probs=26.2
Q ss_pred hhhcccccCcHHHHHHHHHHHHhhccccCCCCcc
Q 007744 352 DCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFY 385 (591)
Q Consensus 352 ~~kQ~y~~Md~~~k~~L~~~l~~~a~~ygL~dl~ 385 (591)
+|++....+|.-+|+.++...|++|.+-|...|+
T Consensus 4 eA~~~L~~iP~fvR~~~r~~~E~~Ar~~G~~~IT 37 (45)
T PF08369_consen 4 EAEARLDRIPFFVRKKLRDAAEKYARERGYDEIT 37 (45)
T ss_dssp HHHHHHCTS-HHHHHHHHHHHHHHHHHCT-SEE-
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHcCCCeEC
Confidence 5566666678899999999999999999987665
No 32
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=27.93 E-value=55 Score=30.01 Aligned_cols=73 Identities=16% Similarity=0.338 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEe-cccccch-----HHhhCC-CCCcE
Q 007744 34 DVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLIN-WGSHRDL-----KRVLNL-GPKAR 106 (591)
Q Consensus 34 DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilIN-cGg~vDl-----~~~l~~-~~~~~ 106 (591)
|-||+-. -....++.-.+.....|...+.|++.+.+... ......|+++| .||-+|- ..++.. ..++.
T Consensus 43 DfDSi~~--~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~---~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~~~~~~ 117 (123)
T PF04263_consen 43 DFDSISP--EVLEFYKSKGVEIIHFPEKDYTDLEKALEYAI---EQGPDEIIVLGALGGRFDHTLANLNLLYKYKKRGIK 117 (123)
T ss_dssp -SSSS-H--HHHHHHHHCTTEEEEE-STTS-HHHHHHHHHH---HTTTSEEEEES-SSSSHHHHHHHHHHHHHHHTTTSE
T ss_pred cCCCCCh--HHHHHHHhhccceecccccccCHHHHHHHHHH---HCCCCEEEEEecCCCcHHHHHHHHHHHHHHHHcCCe
Confidence 8888877 45566777799999999999999999998874 33444555555 5665664 223332 36889
Q ss_pred EEEEc
Q 007744 107 VFVVD 111 (591)
Q Consensus 107 iyViD 111 (591)
|+++|
T Consensus 118 i~lid 122 (123)
T PF04263_consen 118 IVLID 122 (123)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99987
No 33
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=26.96 E-value=68 Score=37.50 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=32.2
Q ss_pred eeEEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhCCCCCcEEEEEcCCC
Q 007744 55 YACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHR 114 (591)
Q Consensus 55 y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~~~~~~~iyViDSHR 114 (591)
.-++=..|--||...++ . . +-..|..|-.==.++|.-++. .+-.|+|+|...
T Consensus 55 vilIncGa~~dl~~~l~-~----~-~~~~iyViDshRP~~L~Nv~~--~~~~v~v~ddg~ 106 (622)
T PF02724_consen 55 VILINCGATVDLEEFLE-L----D-EDVTIYVIDSHRPWNLDNVFS--DNDQVIVFDDGD 106 (622)
T ss_pred EEEEecCchhhHHHHhC-C----C-CceEEEEEeCCCCccHhhccC--CCCcEEEEECCC
Confidence 44444556677776554 2 1 346677777777788888775 344666676644
No 34
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=26.61 E-value=2.9e+02 Score=33.46 Aligned_cols=46 Identities=15% Similarity=0.321 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEE
Q 007744 6 KLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACY 58 (591)
Q Consensus 6 ~~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~ 58 (591)
.+....+.|++... .+.||||++. ++..+..|+.+|++.+|+|.+.
T Consensus 425 K~~al~~~i~~~~~--~g~pvLI~t~-----si~~se~ls~~L~~~gi~~~~L 470 (796)
T PRK12906 425 KFNAVVKEIKERHA--KGQPVLVGTV-----AIESSERLSHLLDEAGIPHAVL 470 (796)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEeC-----cHHHHHHHHHHHHHCCCCeeEe
Confidence 44455555554332 4689999985 5778999999999999999854
No 35
>PRK08638 threonine dehydratase; Validated
Probab=26.58 E-value=76 Score=33.95 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=38.7
Q ss_pred EEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhC
Q 007744 27 LIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLN 100 (591)
Q Consensus 27 lI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~ 100 (591)
++-| .|-+++.|++.|. +...|. +-| +|-.-+.-....... +...-+.|++|.|||++|+..+.+
T Consensus 258 ~v~V--sd~ea~~a~~~l~---~~~gi~--~e~-sgA~~~Aa~~~~~~~-~~~~~~~vv~v~~Ggn~~~~~~~~ 322 (333)
T PRK08638 258 IVLV--SEDEIRNAMKDLI---QRNKVV--TEG-AGALATAALLSGKLD-QYIQNKKVVAIISGGNVDLSRVSQ 322 (333)
T ss_pred EEEE--CHHHHHHHHHHHH---HHcCCe--ech-hHHHHHHHHHhCCcc-cccCCCcEEEEECCCCCCHHHHHH
Confidence 5555 4999999998764 444442 344 444444333211100 011236899999999999998765
No 36
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=26.56 E-value=61 Score=37.74 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=23.2
Q ss_pred CccEEEEEecccccchHHhhCCCCCcEEEEEcCCCCCccC
Q 007744 80 TQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLH 119 (591)
Q Consensus 80 ~~~~vilINcGg~vDl~~~l~~~~~~~iyViDSHRP~~L~ 119 (591)
+.-+||.|=|=|++=+.-.++ .+=|=|.|||.--.
T Consensus 827 saatvViVVcVgfLv~mvvlG-----v~rir~~h~~~~r~ 861 (952)
T KOG1834|consen 827 SAATVVIVVCVGFLVFMVVLG-----VLRIRDAHRRRRRR 861 (952)
T ss_pred cceEEEEEeehhHHHHHHHHh-----heeeecccchhhhh
Confidence 456777788877755544443 35677999998544
No 37
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.45 E-value=37 Score=37.15 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=5.9
Q ss_pred hhhcchhhhh
Q 007744 308 LLQEWNLFDS 317 (591)
Q Consensus 308 LlRHWsLydS 317 (591)
.+|..++|++
T Consensus 414 ~~~~~e~~e~ 423 (514)
T KOG3130|consen 414 VLRSIECEEA 423 (514)
T ss_pred chhhHHHHHh
Confidence 4566666654
No 38
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=25.63 E-value=54 Score=33.25 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=5.4
Q ss_pred HHHHhHhcCCc
Q 007744 43 IILHVLESDSV 53 (591)
Q Consensus 43 IL~~Llk~D~I 53 (591)
+-+.|++.-..
T Consensus 114 LTQyll~~RRL 124 (303)
T COG5129 114 LTQYLLKARRL 124 (303)
T ss_pred HHHHHHHHHHH
Confidence 34555554444
No 39
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=24.74 E-value=1.2e+02 Score=37.03 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEe
Q 007744 5 KKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYP 59 (591)
Q Consensus 5 ~~~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~P 59 (591)
..|...-+.|++... .+.||||++. ++..+.+|+.+|+..+|+|.+.=
T Consensus 428 ~k~~av~~~i~~~~~--~g~PVLVgt~-----Sie~sE~ls~~L~~~gi~h~vLn 475 (896)
T PRK13104 428 DKFQAIIEDVRECGV--RKQPVLVGTV-----SIEASEFLSQLLKKENIKHQVLN 475 (896)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEeC-----cHHHHHHHHHHHHHcCCCeEeec
Confidence 345555566655443 3689999986 78999999999999999998763
No 40
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=24.37 E-value=5e+02 Score=25.89 Aligned_cols=112 Identities=9% Similarity=0.107 Sum_probs=59.5
Q ss_pred HHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCcc----EE
Q 007744 9 SFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQI----TI 84 (591)
Q Consensus 9 ~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~----~v 84 (591)
+..+.|..... .+..|.++++ =|+=---...=|...++..++.++++| |.+-+..+...+ +.... .+
T Consensus 78 ~~~~~i~~~~~--~g~~V~~l~~-GDP~~y~~~~~l~~~~~~~~~~v~viP--GiSs~~~a~a~~----g~~l~~~~~~~ 148 (229)
T PRK05576 78 ENAEEIAAEAE--EGKNVAFITL-GDPNLYSTFSHLLEYLKCHDIEVETVP--GISSFTAIASRA----GVPLAMGDESL 148 (229)
T ss_pred HHHHHHHHHHH--cCCcEEEEeC-cCccccccHHHHHHHHHhCCCCEEEeC--ChhHHHHHHHHc----CCCcccCCceE
Confidence 33444443332 2467999886 566432333334445566577777765 777777777765 33333 67
Q ss_pred EEEecccccchHHhhCCCCCcEEEEEc-CCCCCccCCCcCCCC-cEEEE
Q 007744 85 LLINWGSHRDLKRVLNLGPKARVFVVD-SHRPIHLHNLSDGND-NVVVL 131 (591)
Q Consensus 85 ilINcGg~vDl~~~l~~~~~~~iyViD-SHRP~~L~Nv~~~~~-~v~i~ 131 (591)
.+|.+++.-.+...+... + ++.|+- .|+|-.+..+....+ .+.|.
T Consensus 149 ~iis~~~~~~l~~~l~~~-~-~~vl~~~~~~~~~i~~~l~~~~~~v~v~ 195 (229)
T PRK05576 149 AIIPATREALIEQALTDF-D-SVVLMKVYKNFALIEELLEEGYLDALYV 195 (229)
T ss_pred EEEECCCHHHHHHHhhcC-C-EEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 788888833344555432 3 344444 454444443332211 46665
No 41
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=23.86 E-value=39 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=24.2
Q ss_pred ccCcHHHHHHHHHHHHhhccccCCC---Ccc-cceEE
Q 007744 358 QYMNLEVKRKMKDEFERFLPEYGLT---DFY-YRSFL 390 (591)
Q Consensus 358 ~~Md~~~k~~L~~~l~~~a~~ygL~---dl~-~~sF~ 390 (591)
.-..+++.++|.+.|++.+..||.. |+. ||.|.
T Consensus 60 VD~~Pe~~kel~eel~kL~r~YG~g~~~Dm~kFP~Fk 96 (99)
T PF05511_consen 60 VDAGPEYEKELNEELEKLARQYGGGSGVDMTKFPTFK 96 (99)
T ss_dssp TT--THHHHHHHHHHHHHHHHHHSS---TTTS-SS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcccccHHhCCCCC
Confidence 3457899999999999999999987 554 78773
No 42
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=2.3e+02 Score=25.30 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=49.8
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChH---HHHHhhccccCCCCCCccEEEEEe---cccccchH
Q 007744 23 DSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQ---EIHKYAGPNLGSSSETQITILLIN---WGSHRDLK 96 (591)
Q Consensus 23 ~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~---eL~~~~~e~~~~~~~~~~~vilIN---cGg~vDl~ 96 (591)
..+|+||. . .+.|=|+-+..||..-.+.++++=+.... |++++..+.. ....+-+ |||| .||.-|+.
T Consensus 13 ~~~VVifS--K--s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~t--g~~tvP~-vFI~Gk~iGG~~dl~ 85 (104)
T KOG1752|consen 13 ENPVVIFS--K--SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLT--GQRTVPN-VFIGGKFIGGASDLM 85 (104)
T ss_pred cCCEEEEE--C--CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhc--CCCCCCE-EEECCEEEcCHHHHH
Confidence 46899994 3 68888999999999999999998876543 7888888763 1122222 2333 38998888
Q ss_pred Hhh
Q 007744 97 RVL 99 (591)
Q Consensus 97 ~~l 99 (591)
++-
T Consensus 86 ~lh 88 (104)
T KOG1752|consen 86 ALH 88 (104)
T ss_pred HHH
Confidence 763
No 43
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=22.61 E-value=2.1e+02 Score=29.31 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=32.1
Q ss_pred CCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecC
Q 007744 22 SDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVS 61 (591)
Q Consensus 22 ~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~ 61 (591)
.+.+|+|-|| =-+||+|...+|..+-+.-.+.|++++|.
T Consensus 28 ~~~kilVa~S-GG~DS~~LL~ll~~l~~~~~~~~~l~av~ 66 (258)
T PRK10696 28 EGDRVMVCLS-GGKDSYTLLDILLNLQKRAPINFELVAVN 66 (258)
T ss_pred CCCEEEEEec-CCHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 4568999998 69999999999998766666677777776
No 44
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=21.90 E-value=3.9e+02 Score=26.22 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=44.5
Q ss_pred cchhhhhhhcCccchhcccccccchHHHHHHHHHHhCCchhhhhcccccCcHHHHHHHHHHHHhhccccCCCCcccceEE
Q 007744 311 EWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFL 390 (591)
Q Consensus 311 HWsLydSm~~S~yvaskL~lW~~~G~krL~~lLA~MGisL~~~kQ~y~~Md~~~k~~L~~~l~~~a~~ygL~dl~~~sF~ 390 (591)
||.+|++++.. . . + .....|.+++++.|++..+..+.+.. ...+..+.. -.+.+.++|++. -|+|+
T Consensus 107 ~~~lf~~i~~~-~-----~-~--~~~~~L~~~a~~~Gld~~~f~~~l~s--~~~~~~v~~-~~~~a~~~gI~g--tPtfi 172 (207)
T PRK10954 107 TPPLFEGVQKT-Q-----T-I--QSAADIRDVFIKAGVKGEDYDAAWNS--FVVKSLVAQ-QEKAAADLQLRG--VPAMF 172 (207)
T ss_pred HHHHHHHHHcc-C-----C-C--CCHHHHHHHHHHcCCCHHHHHHHHhC--hHHHHHHHH-HHHHHHHcCCCC--CCEEE
Confidence 57788886432 1 1 2 24567999999999999888887655 345554444 444678888864 36666
Q ss_pred E
Q 007744 391 R 391 (591)
Q Consensus 391 r 391 (591)
-
T Consensus 173 I 173 (207)
T PRK10954 173 V 173 (207)
T ss_pred E
Confidence 5
No 45
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=21.62 E-value=3.8e+02 Score=32.19 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEE
Q 007744 6 KLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITIL 85 (591)
Q Consensus 6 ~~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vi 85 (591)
.|....+.|++... .+.|||||+. +++.+..|+.+|+..+|++.+.=-. ..+=+...... .+......|
T Consensus 390 k~~ai~~~i~~~~~--~grpvLV~t~-----si~~se~ls~~L~~~gi~~~~Lna~-q~~rEa~ii~~---ag~~g~VtI 458 (745)
T TIGR00963 390 KWKAVVDEIKERHA--KGQPVLVGTT-----SVEKSELLSNLLKERGIPHNVLNAK-NHEREAEIIAQ---AGRKGAVTI 458 (745)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeC-----cHHHHHHHHHHHHHcCCCeEEeeCC-hHHHHHHHHHh---cCCCceEEE
Confidence 45555555655443 3689999985 6888999999999999999764332 22222233322 233445555
Q ss_pred EEecccc-cchHH--hhCCCCCcEEEEEcCCCCCcc
Q 007744 86 LINWGSH-RDLKR--VLNLGPKARVFVVDSHRPIHL 118 (591)
Q Consensus 86 lINcGg~-vDl~~--~l~~~~~~~iyViDSHRP~~L 118 (591)
-=|..|- .|+.. +-++ --.|||=.+||-+.
T Consensus 459 ATnmAgRGtDI~l~~V~~~---GGl~VI~t~~p~s~ 491 (745)
T TIGR00963 459 ATNMAGRGTDIKLEEVKEL---GGLYVIGTERHESR 491 (745)
T ss_pred EeccccCCcCCCccchhhc---CCcEEEecCCCCcH
Confidence 4555443 55543 2211 14688888888643
No 46
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=20.59 E-value=1.1e+02 Score=29.88 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=56.4
Q ss_pred CEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhC---C
Q 007744 25 PLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLN---L 101 (591)
Q Consensus 25 ~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~---~ 101 (591)
+|+|+ ++| ---=+-|+..|++.| +=++.|+.||+ ...+ -...-.+.+-..||..-+.+++. -
T Consensus 18 riLiL--GLd--NsGKTti~~kl~~~~--~~~i~pt~gf~-----Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfe 82 (185)
T KOG0073|consen 18 RILIL--GLD--NSGKTTIVKKLLGED--TDTISPTLGFQ-----IKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFE 82 (185)
T ss_pred EEEEE--ecC--CCCchhHHHHhcCCC--ccccCCcccee-----eEEE----EecceEEEEEEcCCcchhHHHHHHhhh
Confidence 56665 344 334566888888888 77888888875 1122 12446788899999999999875 2
Q ss_pred CCCcEEEEEcCCCCCcc
Q 007744 102 GPKARVFVVDSHRPIHL 118 (591)
Q Consensus 102 ~~~~~iyViDSHRP~~L 118 (591)
..+.-|||+||--|--+
T Consensus 83 stdglIwvvDssD~~r~ 99 (185)
T KOG0073|consen 83 STDGLIWVVDSSDRMRM 99 (185)
T ss_pred ccCeEEEEEECchHHHH
Confidence 46889999999877743
No 47
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=20.54 E-value=1.3e+02 Score=36.50 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=38.4
Q ss_pred chHHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecC
Q 007744 5 KKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVS 61 (591)
Q Consensus 5 ~~~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~ 61 (591)
..|...-+.|++... .+.||||... +++++.+|+.+|+..+|+|++.=-.
T Consensus 408 ~K~~AI~~ei~~~~~--~grPVLIgT~-----SIe~SE~ls~~L~~~gi~h~vLNAk 457 (870)
T CHL00122 408 SKWRAIADECLQMHQ--TGRPILIGTT-----TIEKSELLSQLLKEYRLPHQLLNAK 457 (870)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEeeC-----CHHHHHHHHHHHHHcCCccceeeCC
Confidence 345556666665443 3689999975 7899999999999999999986543
Done!