BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007745
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/478 (46%), Positives = 307/478 (64%), Gaps = 12/478 (2%)
Query: 109 VVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAELRNMVSRTLTCRIDKR 168
++GASGDLAKKKI+P ++ L+ +G LP++ I GYARS++T A++R +++
Sbjct: 10 IMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEK 69
Query: 169 ENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKLMAHEGGRVSNRLFYLSIPPNIFIDAV 228
K+++F R Y +GQYD ++ L+ + A G +NRLFYL++PP ++
Sbjct: 70 L----KLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVT 125
Query: 229 RCASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLGKELVENL 288
+ S S GW R+IVEKPFGRD +SS ++ + +EDQI+RIDHYLGKE+V+NL
Sbjct: 126 KNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNL 185
Query: 289 SVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALF 348
VLRF+N IF P+W+R I V L F E FGTEGRGGYFD +GIIRD+MQNHLLQ+L L
Sbjct: 186 MVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLV 245
Query: 349 AMETPVSLDAEDTRNEKVKVLRSMRPLRLEDVVTGQYKSHTKG-GVSYPAYTDDKTVSKD 407
AME P S +++D R+EKVKVL+ + ++ +VV GQY + G G + Y DD TV +
Sbjct: 246 AMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRG 305
Query: 408 SLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGNLYNRNFGTDLDR 467
S T TFAA L+++N RWDGVPF+++ GKAL+ R+ E+R+QF V G+++++
Sbjct: 306 STTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQC------ 359
Query: 468 ATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSK-EIPDAYERLLLDAI 526
NELV+RVQP+EA+Y K+ K PG+ + S L+L Y RY ++PDAYERL+LD
Sbjct: 360 KRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLILDVF 419
Query: 527 EGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 584
G + F+RSDEL AW +FTP P Y YGSRGP A L R ++
Sbjct: 420 CGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADELMKRVGFQY 477
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/478 (46%), Positives = 307/478 (64%), Gaps = 12/478 (2%)
Query: 109 VVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAELRNMVSRTLTCRIDKR 168
++GASGDLAKKKI+P ++ L+ +G LP++ I GYARS++T A++R +++
Sbjct: 35 IMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEK 94
Query: 169 ENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKLMAHEGGRVSNRLFYLSIPPNIFIDAV 228
K+++F R Y +GQYD ++ L+ + A G +NRLFYL++PP ++
Sbjct: 95 L----KLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVT 150
Query: 229 RCASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLGKELVENL 288
+ S S GW R+IVEKPFGRD +SS ++ + +EDQI+RIDHYLGKE+V+NL
Sbjct: 151 KNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNL 210
Query: 289 SVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALF 348
VLRF+N IF P+W+R I V L F E FGTEGRGGYFD +GIIRD+MQNHLLQ+L L
Sbjct: 211 MVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLV 270
Query: 349 AMETPVSLDAEDTRNEKVKVLRSMRPLRLEDVVTGQYKSHTKG-GVSYPAYTDDKTVSKD 407
AME P S +++D R+EKVKVL+ + ++ +VV GQY + G G + Y DD TV +
Sbjct: 271 AMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRG 330
Query: 408 SLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGNLYNRNFGTDLDR 467
S T TFAA L+++N RWDGVPF+++ GKAL+ R+ E+R+QF V G+++++
Sbjct: 331 STTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQC------ 384
Query: 468 ATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSK-EIPDAYERLLLDAI 526
NELV+RVQP+EA+Y K+ K PG+ + S L+L Y RY ++PDAYERL+LD
Sbjct: 385 KRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLILDVF 444
Query: 527 EGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 584
G + F+RSDEL AW +FTP P Y YGSRGP A L R ++
Sbjct: 445 CGSQMHFVRSDELLEAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADELMKRVGFQY 502
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/479 (46%), Positives = 294/479 (61%), Gaps = 22/479 (4%)
Query: 105 VSITVVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAEL--RNMVSRTLT 162
++I V+GASGDLAKKK FPALF LY G LP+ I GYARS M D E ++ ++ T
Sbjct: 55 LTIVVLGASGDLAKKKTFPALFQLYCNGMLPRDVNILGYARSTMEDVEKWKKDTLAGFFT 114
Query: 163 CRIDKRENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKLMAHEGG-----RVSNRLFYL 217
R+D+R C + FL+R Y +G YD E+FA L+++++ E + NRLFYL
Sbjct: 115 -RLDER-GC--HVGNFLRRISYMTGSYDRDEDFARLNERILRMEEAFQGPEKGGNRLFYL 170
Query: 218 SIPPNIFIDAVRCASSSASSGN--GWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFR 275
++PP++F+ R S A GW R+IVEKPFGRD+E+S ++ LK E Q+FR
Sbjct: 171 ALPPSVFVGVCRGLSKGAMQKPELGWVRLIVEKPFGRDTETSEQLSNQLKPLFNERQVFR 230
Query: 276 IDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRD 335
IDHYLGKE+V+N+ V RF+N +F LW+ I VQ+ F E GT GRGGYFD GIIRD
Sbjct: 231 IDHYLGKEMVQNIIVTRFANRVFSALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRD 290
Query: 336 IMQNHLLQILALFAMETPVSLDAEDTRNEKVKVLRSMRPLRLEDVVTGQYKSHTKGGVSY 395
++QNHL QIL+L ME P SL AED R+EKV+VLR + P + V GQY + G S
Sbjct: 291 VIQNHLTQILSLLTMEKPRSLSAEDIRDEKVQVLRQVVPANPAECVLGQYTASADG--ST 348
Query: 396 PAYTDDKTVSKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGN 455
P Y DD +V K S PTFA L ++N RW GVPF+++AGKAL R +IR+QF+
Sbjct: 349 PGYLDDPSVPKGSHCPTFAVLRLHVNNDRWHGVPFIIRAGKALEERLLDIRIQFKD---- 404
Query: 456 LYNRNFGTDLDRATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSKEIP 515
R FG R NELV+R QP EA+YLK+ K PGL ++ L+L Y RY +P
Sbjct: 405 -EIRPFGESTQR--NELVIRAQPSEAMYLKLTAKTPGLLNDTHQTELDLTYERRYDVTLP 461
Query: 516 DAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAH 574
DAYE L+ +A+ G F+R DELDAAW ++TP + Y GS GP A
Sbjct: 462 DAYESLIHEALLGNSTNFVRVDELDAAWRIYTPLLHAIDRGEVKVLPYAAGSCGPEEAQ 520
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 254 bits (650), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 151/485 (31%), Positives = 240/485 (49%), Gaps = 18/485 (3%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAELRNMVSRTLTCRID 166
+T G +GDLAK+K++P++F LY +G+L KHF I G AR + D E + +V ++ D
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 167 KRENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKL--MAHEGGRVSNRLFYLSIPPNIF 224
+ + F++ Y + ++A L + + A + NR+FY+S+ P F
Sbjct: 68 DQAQAEA----FIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFF 123
Query: 225 IDAVR-CASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLGKE 283
+ S + G+ R+++EKPFG +++A + L+ ++Q+FRIDHYLGKE
Sbjct: 124 GTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKE 183
Query: 284 LVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQ 343
+V+N++ LRF N IF+ W++ YI+NVQ+ SE G E R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 344 ILALFAMETPVSLDAEDTRNEKVKVLRSMRPLRLEDV----VTGQYKSHTKGGVSYPAYT 399
I+ AME P S +D R K +++ +V V QY + + Y
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSA--DFKPYL 301
Query: 400 DDKTVSKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGNLYNR 459
++ V DS TF A L D RW+GVPF +++GK L ++T + + F+ G
Sbjct: 302 EELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF--- 356
Query: 460 NFGTDLDRATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSKEIPDAYE 519
NFG++ + L + + P AI LK+N K L + K P+ YE
Sbjct: 357 NFGSEQEACEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYE 416
Query: 520 RLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAAR 579
R++ D + G+ F + + AW E Y GS GP + L A
Sbjct: 417 RMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAA 476
Query: 580 YNVRW 584
W
Sbjct: 477 NGDAW 481
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/485 (31%), Positives = 239/485 (49%), Gaps = 18/485 (3%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAELRNMVSRTLTCRID 166
+T G +GDLAK+K++P++F LY +G+L KHF I G AR + D E + +V + D
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKDFTD 67
Query: 167 KRENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKL--MAHEGGRVSNRLFYLSIPPNIF 224
+ + F++ Y + ++A L + + A + NR+FY+S+ P F
Sbjct: 68 DQAQAEA----FIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFF 123
Query: 225 IDAVR-CASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLGKE 283
+ S + G+ R+++EKPFG +++A + L+ ++Q+FRIDHYLGKE
Sbjct: 124 GTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKE 183
Query: 284 LVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQ 343
+V+N++ LRF N IF+ W++ YI+NVQ+ SE G E R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 344 ILALFAMETPVSLDAEDTRNEKVKVLRSMRPLRLEDV----VTGQYKSHTKGGVSYPAYT 399
I+ AME P S +D R K +++ +V V QY + + Y
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSA--DFKPYL 301
Query: 400 DDKTVSKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGNLYNR 459
++ V DS TF A L D RW+GVPF +++GK L ++T + + F+ G
Sbjct: 302 EELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF--- 356
Query: 460 NFGTDLDRATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSKEIPDAYE 519
NFG++ + L + + P AI LK+N K L + K P+ YE
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYE 416
Query: 520 RLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAAR 579
R++ D + G+ F + + AW E Y GS GP + L A
Sbjct: 417 RMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAA 476
Query: 580 YNVRW 584
W
Sbjct: 477 NGDAW 481
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 239/485 (49%), Gaps = 18/485 (3%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAELRNMVSRTLTCRID 166
+T G +GDLAK+K++P++F LY +G+L KHF I G AR + D E + +V ++ D
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 167 KRENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKL--MAHEGGRVSNRLFYLSIPPNIF 224
+ + F++ Y + ++A L + + A + NR+FY+S+ P F
Sbjct: 68 DQAQAEA----FIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFF 123
Query: 225 IDAVR-CASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLGKE 283
+ S + G+ R+++EKPFG +++A + L+ ++Q+FRIDHYLGKE
Sbjct: 124 GTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKE 183
Query: 284 LVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQ 343
+V+N++ LRF N IF+ W++ YI+NVQ+ E G E R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLCEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 344 ILALFAMETPVSLDAEDTRNEKVKVLRSMRPLRLEDV----VTGQYKSHTKGGVSYPAYT 399
I+ AME P S +D R K +++ +V V QY + + Y
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSA--DFKPYL 301
Query: 400 DDKTVSKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGNLYNR 459
++ V DS TF A L D RW+GVPF +++GK L ++T + + F+ G
Sbjct: 302 EELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF--- 356
Query: 460 NFGTDLDRATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSKEIPDAYE 519
NFG++ + L + + P AI LK+N K L + K P+ YE
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYE 416
Query: 520 RLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAAR 579
R++ D + G+ F + + AW E Y GS GP + L A
Sbjct: 417 RMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAA 476
Query: 580 YNVRW 584
W
Sbjct: 477 NGDAW 481
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 252 bits (644), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 240/485 (49%), Gaps = 18/485 (3%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAELRNMVSRTLTCRID 166
+T G +GDLAK+K++P++F LY +G+L KHF I G AR + D E + +V ++ D
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 167 KRENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKL--MAHEGGRVSNRLFYLSIPPNIF 224
+ + F++ Y + ++A L + + A + NR+FY+S+ P F
Sbjct: 68 DQAQAEA----FIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFF 123
Query: 225 IDAVR-CASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLGKE 283
+ S + G+ R+++EKPFG +++A + L+ ++Q+FRI+HYLGKE
Sbjct: 124 GTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRINHYLGKE 183
Query: 284 LVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQ 343
+V+N++ LRF N IF+ W++ YI+NVQ+ SE G E R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 344 ILALFAMETPVSLDAEDTRNEKVKVLRSMRPLRLEDV----VTGQYKSHTKGGVSYPAYT 399
I+ AME P S +D R K +++ +V V QY + + Y
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSA--DFKPYL 301
Query: 400 DDKTVSKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGNLYNR 459
++ V DS TF A L D RW+GVPF +++GK L ++T + + F+ G
Sbjct: 302 EELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF--- 356
Query: 460 NFGTDLDRATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSKEIPDAYE 519
NFG++ + L + + P AI LK+N K L + K P+ YE
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYE 416
Query: 520 RLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAAR 579
R++ D + G+ F + + AW E Y GS GP + L A
Sbjct: 417 RMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAA 476
Query: 580 YNVRW 584
W
Sbjct: 477 NGDAW 481
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 251 bits (641), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 240/485 (49%), Gaps = 18/485 (3%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEGFLPKHFTIFGYARSKMTDAELRNMVSRTLTCRID 166
+T G +GDLAK+K++P++F LY +G+L KHF I G AR + D E + +V ++ D
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 167 KRENCDEKMDEFLKRCFYHSGQYDSQENFAALDKKL--MAHEGGRVSNRLFYLSIPPNIF 224
+ + F++ Y + ++A L + + A + NR+FY+S+ P F
Sbjct: 68 DQAQAEA----FIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFF 123
Query: 225 IDAVR-CASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLGKE 283
+ S + G+ R+++EKPFG +++A + L+ ++Q+FRIDHYLGKE
Sbjct: 124 GTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKE 183
Query: 284 LVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQ 343
+V+N++ LRF N IF+ W++ YI+NVQ+ SE G E R GY+D G + D++QN+ +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNNTMQ 243
Query: 344 ILALFAMETPVSLDAEDTRNEKVKVLRSMRPLRLEDV----VTGQYKSHTKGGVSYPAYT 399
I+ AME P S +D R K +++ +V V QY + + Y
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSA--DFKPYL 301
Query: 400 DDKTVSKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTRRTEIRVQFRHVPGNLYNR 459
++ V DS TF A L D RW+GVPF +++GK L ++T + + F+ G
Sbjct: 302 EELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF--- 356
Query: 460 NFGTDLDRATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSHLNLHYAARYSKEIPDAYE 519
NFG++ + L + + P AI LK+N K L + K P+ YE
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYE 416
Query: 520 RLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAAR 579
R++ D + G+ F + + AW E Y GS GP + L A
Sbjct: 417 RMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAA 476
Query: 580 YNVRW 584
W
Sbjct: 477 NGDAW 481
>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDF|B Chain B, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDI|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDI|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDX|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UDX|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UE0|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE0|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE1|A Chain A, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
pdb|3UE1|B Chain B, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
Length = 731
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 199 DKKLMAHEGGRVSNRLFYLSIPPNIFIDAVRCASSSA---SSG---NGWTRVIVEKPFGR 252
D +L+A GG++S + Y IPPN FI A A S+ SG G R + E G
Sbjct: 27 DNQLIAEYGGKLSIPVEYKQIPPN-FIHAFLAAEDSSFFEHSGISFKGLGRALSESVTGS 85
Query: 253 DSE---SSAAMTKSLKQYLKEDQIFR---IDHYLGKELVENLS 289
D + S+ M + YL ++ + + +L +++ +NLS
Sbjct: 86 DVQTGGSTITMQVAKNYYLSPERTLKRKITEIFLARKIEQNLS 128
>pdb|3P1Z|B Chain B, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|D Chain D, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|F Chain F, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|H Chain H, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|J Chain J, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|L Chain L, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
Length = 186
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 222 NIFIDAVRCASSSASSGNGWTRVIVEKPFGRDSESSAAMTKSLKQYLKEDQIFRIDHYLG 281
++ + V A S S G + VEKP G D E ++ YL E + + G
Sbjct: 18 SVLVTDVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLAEKGVLEVAKPDG 77
Query: 282 KEL-VENLSVL-----RFSNL--IFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDH 329
+ VE+L RFS L I+ L R ++ L F DF G DH
Sbjct: 78 SSVGVEDLRTAVRGNPRFSMLYNIYRDLRERGFVVRSGLKFGSDFAVYRLGPGIDH 133
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 432 MKAGKALHTRRTEIRVQFRHVPGNLYNRNFGTDLDRATNELVLRVQPDEAIYLKINNKVP 491
+K+ +AL + E+ VQ + R+ T LD L+LR +P E +++++ K
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDT----LILREKPGEPEWVELDRKNI 63
Query: 492 GLGMRLDRSHLN---LHYAARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWAL 545
L + + +LN LH A S E+ E E+ LF R+ AAW L
Sbjct: 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-------NEKALFRRAKARIAAWKL 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,929,515
Number of Sequences: 62578
Number of extensions: 696720
Number of successful extensions: 1583
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1536
Number of HSP's gapped (non-prelim): 13
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)