BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007746
(591 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera]
Length = 773
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/649 (55%), Positives = 431/649 (66%), Gaps = 66/649 (10%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR ADHRDKLLACG LIV
Sbjct: 133 MLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADHRDKLLACGALIV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+GLL SLPIKKMKQ
Sbjct: 192 AELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLGSLPIKKMKQ 251
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGISGEEV++RLL K
Sbjct: 252 LGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGEEVESRLLSK 311
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHTLTLHA A+KS+D
Sbjct: 312 SHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTLHARAYKSND 371
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ + SGW ITALSVS
Sbjct: 372 SDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSGWSITALSVS 431
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSPSGSESYSTLNSTELQN 359
ASKIV + +GTCSIMKYF+G D S+ +Q D +AA LS SGSESY LN E Q
Sbjct: 432 ASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSESYLGLNPRETQK 491
Query: 360 ELPGEQVWIEHSMADLGQLEMKANTW--NGLDPSCSISKQTSGTESSSSLDQNKPQNRDD 417
+ PGE+ I + M +L Q E K W G K+ + T S S +Q +P D
Sbjct: 492 QFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQEQVEPIQ--D 549
Query: 418 SRMRS------------------VPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSG 459
+++ S +P + E + +A +D A+ + +K D+ CS
Sbjct: 550 TKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVM 609
Query: 460 NHDTEHAETLLPLGDCLSESNKKQVNIPKE----------RLDNSTG-----------DC 498
+ + + S + QV +PKE R D+S DC
Sbjct: 610 DELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDC 666
Query: 499 ---------LSESNQ-------NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLR 542
+ E Q NQV +PKE + AA T + RC +R E+W +
Sbjct: 667 SVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRCSLGGGAERRETWSYK 724
Query: 543 IEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKNR 591
I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP KN+
Sbjct: 725 IDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK 773
>gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
Length = 779
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 358/655 (54%), Positives = 431/655 (65%), Gaps = 72/655 (10%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR ADHRDKLLACG LIV
Sbjct: 133 MLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADHRDKLLACGALIV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+GLL SLPIKKMKQ
Sbjct: 192 AELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLGSLPIKKMKQ 251
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGISGEEV++RLL K
Sbjct: 252 LGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGEEVESRLLSK 311
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHTLTLHA A+KS+D
Sbjct: 312 SHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTLHARAYKSND 371
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ + SGW ITALSVS
Sbjct: 372 SDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSGWSITALSVS 431
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSP------SGSESYSTLN 353
ASKIV + +GTCSIMKYF+G D S+ +Q D +AA LS SGSESY LN
Sbjct: 432 ASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSDWGVYSGSESYLGLN 491
Query: 354 STELQNELPGEQVWIEHSMADLGQLEMKANTW--NGLDPSCSISKQTSGTESSSSLDQNK 411
E Q + PGE+ I + M +L Q E K W G K+ + T S S +Q +
Sbjct: 492 PRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQEQVE 551
Query: 412 PQNRDDSRMRS------------------VPIKSNQQEHKKSALKDKGASSILNFFKSGD 453
P D+++ S +P + E + +A +D A+ + +K D
Sbjct: 552 PIQ--DTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYKIDD 609
Query: 454 LSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKE----------RLDNSTG------- 496
+ CS + + + S + QV +PKE R D+S
Sbjct: 610 IDCSVMDELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYK 666
Query: 497 ----DC---------LSESNQ-------NQVNIPKERLAEAATTSTSTDRCGSDQIQQRS 536
DC + E Q NQV +PKE + AA T + RC +R
Sbjct: 667 IDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRCSLGGGAERR 724
Query: 537 ESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKNR 591
E+W +I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP KN+
Sbjct: 725 ETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK 779
>gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max]
Length = 703
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 334/607 (55%), Positives = 402/607 (66%), Gaps = 52/607 (8%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML ETP +S+ + ++E LKSH+LGLE KDG+D+K V++WLCR DA ++DKLLACG LIV
Sbjct: 133 MLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASYQDKLLACGALIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LRM+VLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+GLL SLPIKKMK
Sbjct: 193 CDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEGLLASLPIKKMKH 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGISGEEV+ RLLPK
Sbjct: 253 LGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGISGEEVEGRLLPK 312
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGP+ALKTV SVQHWLNQLCEEL+ERL SDL+QNKRIA TLTLHA A+K+ D
Sbjct: 313 SHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQTLTLHARAYKTGD 372
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS +KFPSKSCPLRYGT KIQED LFQAGLR+FLG + K G+ + W +T+LSVS
Sbjct: 373 SDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNENNNWGVTSLSVS 432
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSESYSTLNSTELQN 359
ASK+V + SGT SI+KYF G STS Q D ID AAP SPSGS + S L E +
Sbjct: 433 ASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSGNCSGLVPNEFEL 492
Query: 360 ELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLD----------Q 409
E P E ++ S A L Q DP C +S + G SSL
Sbjct: 493 EYP-EDTGMKDSKACLDQ----------QDPLCHLSCKADGLTEESSLVSPSGSEDRILH 541
Query: 410 NKPQN----RDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEH 465
N+P D R+ ++ + K + K +G SI++FF + S SS
Sbjct: 542 NEPHRDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYHNSQSS------- 594
Query: 466 AETLLPLGDCLSESNKK-QVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTST 524
L + N K ++ DNS C+ QV +P E E T+ S
Sbjct: 595 ----------LEQKNVKISSSLGSHSADNSHSTCI------QVEMPAEHPHEEFDTNKS- 637
Query: 525 DRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADY 584
RC + Q + W I EIDPS+I+ELP EIQ E Q WLRP KRP+ K+G +I Y
Sbjct: 638 -RCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVAKRGSSITHY 696
Query: 585 FSPSKNR 591
FSP K+R
Sbjct: 697 FSPDKSR 703
>gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
Length = 672
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 310/592 (52%), Positives = 387/592 (65%), Gaps = 60/592 (10%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLA+ PPESL+ +DEE LKSHILG+ +DG+D K V++W+CR DAD R+KLL+CG++IV
Sbjct: 133 MLADAPPESLELIDEEVLKSHILGMSREDGDDFKENVRDWICRKDADRREKLLSCGIIIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+S+V+ LL SLPIKKMKQ
Sbjct: 193 AELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYSAVQELLSSLPIKKMKQ 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LG+ TVGDLL++SE KLQE YG NTGTWLWNIARGISGEEVQ RLLPK
Sbjct: 253 LGGKLGTSLQTDLGIDTVGDLLQYSETKLQEHYGINTGTWLWNIARGISGEEVQGRLLPK 312
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAFKS D
Sbjct: 313 SHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLSSDLEQNKRIASTLTLHASAFKSRD 372
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
S+S KKFPSKSCPLRYG KIQED FNLFQA RE++G FG K +G+ WRIT LS+S
Sbjct: 373 SNSHKKFPSKSCPLRYGVTKIQEDAFNLFQAAFREYMGPFGSKPRGNKQETWRITGLSIS 432
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNE 360
ASKIV + SGT SIM+YF S S + D ++PS SE S STE Q
Sbjct: 433 ASKIVDIPSGTSSIMRYFQSESTVPSRS--VDGCVQDHVTITPSASEGCSEQRSTETQAA 490
Query: 361 LPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRM 420
+P E+ + +++ + N G+DP + + ++ + N+
Sbjct: 491 MPEEETGVTYTLHNF------ENPDKGIDPVSEKDVVSCPSNEATDVSTQSESNKGTQTK 544
Query: 421 RSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESN 480
R +N +E K+ G SI++ FK+ + + S E + +S ++
Sbjct: 545 RIGRKMNNSKE------KNWGMPSIVDIFKNYNATPPSKQETQEDS--------TVSSTS 590
Query: 481 KKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWK 540
KK + NS S+ +QVN E ++R + W
Sbjct: 591 KKA------KFSNS-------SHNSQVNQEVE--------------------ERREKDWG 617
Query: 541 LRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 587
+ +EID SV DELP EIQ E++++LRP+K+ + K G T IA YF P
Sbjct: 618 YKTDEIDQSVFDELPVEIQRELRSFLRPNKQFNAGKSKGDGSTSSIAHYFPP 669
>gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana]
gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 672
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/593 (52%), Positives = 384/593 (64%), Gaps = 62/593 (10%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDKLL+CG++IV
Sbjct: 133 MLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIIIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQ
Sbjct: 193 AELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQ 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPK
Sbjct: 253 LGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPK 312
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S D
Sbjct: 313 SHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKD 372
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT LSVS
Sbjct: 373 SDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRITGLSVS 432
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNSTELQN 359
ASKIV + SGT SIM+YF S S D + ++ S SE S STE Q
Sbjct: 433 ASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRSTETQA 489
Query: 360 ELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSR 419
+P + +++ + + + + D S + T+ S+ + NK ++
Sbjct: 490 AMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK-----GTQ 542
Query: 420 MRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSES 479
+ + K N + K++G SI++ FK+ + + S E D S
Sbjct: 543 TKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------DSTVSS 588
Query: 480 NKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESW 539
K+ + S S+ +QVN E + R W
Sbjct: 589 ASKRAKLS------------SSSHNSQVNQEVE--------------------ESRETDW 616
Query: 540 KLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 587
+ +EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 617 GYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 669
>gi|30694597|ref|NP_851130.1| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|13430742|gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|21280927|gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|332007771|gb|AED95154.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 588
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/593 (52%), Positives = 384/593 (64%), Gaps = 62/593 (10%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDKLL+CG++IV
Sbjct: 49 MLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIIIV 108
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQ
Sbjct: 109 AELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQ 168
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPK
Sbjct: 169 LGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPK 228
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S D
Sbjct: 229 SHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKD 288
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT LSVS
Sbjct: 289 SDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRITGLSVS 348
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNSTELQN 359
ASKIV + SGT SIM+YF S S D + ++ S SE S STE Q
Sbjct: 349 ASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRSTETQA 405
Query: 360 ELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSR 419
+P + +++ + + + + D S + T+ S+ + NK ++
Sbjct: 406 AMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK-----GTQ 458
Query: 420 MRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSES 479
+ + K N + K++G SI++ FK+ + + S E D S
Sbjct: 459 TKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------DSTVSS 504
Query: 480 NKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESW 539
K+ + S S+ +QVN E + R W
Sbjct: 505 ASKRAKLS------------SSSHNSQVNQEVE--------------------ESRETDW 532
Query: 540 KLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 587
+ +EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 533 GYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 585
>gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis
thaliana]
Length = 672
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 309/593 (52%), Positives = 382/593 (64%), Gaps = 62/593 (10%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDKLL+CG++IV
Sbjct: 133 MLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIIIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELR QVLKETE TCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQ
Sbjct: 193 AELRKQVLKETELTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQ 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPK
Sbjct: 253 LGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPK 312
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S D
Sbjct: 313 SHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKD 372
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GS G+K QG+ WRIT LSVS
Sbjct: 373 SDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSVGIKPQGNKLETWRITGLSVS 432
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNSTELQN 359
ASKIV + SGT SIM+YF S S D + ++ S SE S STE Q
Sbjct: 433 ASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRSTETQA 489
Query: 360 ELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSR 419
+P + +++ + + + + D S + T+ S+ + NK ++
Sbjct: 490 AMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK-----GTQ 542
Query: 420 MRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSES 479
+ + K N + K++G SI++ FK+ + + S E D S
Sbjct: 543 TKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------DSTVSS 588
Query: 480 NKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESW 539
K+ + S S+ +QVN E + R W
Sbjct: 589 ASKRAKLS------------SSSHNSQVNQEVE--------------------ESRETDW 616
Query: 540 KLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 587
+ +EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 617 GYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 669
>gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana]
Length = 689
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 311/598 (52%), Positives = 384/598 (64%), Gaps = 67/598 (11%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDKLL+CG++IV
Sbjct: 145 MLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIIIV 204
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQ
Sbjct: 205 AELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQ 264
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPK
Sbjct: 265 LGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPK 324
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK--- 237
SHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+
Sbjct: 325 SHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRVPT 384
Query: 238 --SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 295
S DSDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT
Sbjct: 385 SLSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRIT 444
Query: 296 ALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNS 354
LSVSASKIV + SGT SIM+YF S S D + ++ S SE S S
Sbjct: 445 GLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRS 501
Query: 355 TELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQN 414
TE Q +P + +++ + + + + D S + T+ S+ + NK
Sbjct: 502 TETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK--- 556
Query: 415 RDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGD 474
++ + + K N + K++G SI++ FK+ + + S E D
Sbjct: 557 --GTQTKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------D 600
Query: 475 CLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQ 534
S K+ + S S+ +QVN E +
Sbjct: 601 STVSSASKRAKLS------------SSSHNSQVNQEVE--------------------ES 628
Query: 535 RSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 587
R W + +EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 629 RETDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 686
>gi|224075345|ref|XP_002304597.1| predicted protein [Populus trichocarpa]
gi|222842029|gb|EEE79576.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/320 (78%), Positives = 290/320 (90%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML ETPPESL+ ++EE+ KSHILGL+S+D ND++ V +WL R DA+H+DKLLACG LIV
Sbjct: 32 MLRETPPESLESINEESRKSHILGLKSEDANDAQENVSKWLRRSDANHQDKLLACGALIV 91
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+ELRM+VLKET+FTCSAGIAHNKMLAKL SGMNKPAQQT VP SSVKGLL+SLPIKKMKQ
Sbjct: 92 SELRMEVLKETQFTCSAGIAHNKMLAKLVSGMNKPAQQTVVPSSSVKGLLESLPIKKMKQ 151
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LGV+TVGDLL+FSE+KLQE +G NTGTWLW+IARGI+GEEVQ RLLPK
Sbjct: 152 LGGKLGTSLQTDLGVSTVGDLLQFSEEKLQERFGINTGTWLWSIARGINGEEVQGRLLPK 211
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG+GKSFPGPRALKT+ASVQHWLNQLC+EL+ER+C DL+QNK+IAHT T++ASA+KS D
Sbjct: 212 SHGAGKSFPGPRALKTIASVQHWLNQLCDELNERICCDLDQNKQIAHTFTVYASAYKSCD 271
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
S+S KKFPSKSCPLRYGTAKIQED FNLFQAGLRE++GS GVKT G H++GW IT+LSVS
Sbjct: 272 SESYKKFPSKSCPLRYGTAKIQEDAFNLFQAGLREYIGSHGVKTLGHHHNGWGITSLSVS 331
Query: 301 ASKIVPVLSGTCSIMKYFNG 320
ASKIV + SGT SI KYF+G
Sbjct: 332 ASKIVAIPSGTGSITKYFHG 351
>gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula]
gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula]
Length = 543
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/389 (70%), Positives = 314/389 (80%), Gaps = 4/389 (1%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML ETPPE ++ V+EE LKSH+LGL+ KDG+D+K V++W+CR DA +++KLLACG IV
Sbjct: 133 MLMETPPECVEHVEEEVLKSHVLGLQIKDGDDAKEEVRKWICRSDASYQEKLLACGAFIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+GLL+S PIKKMKQ
Sbjct: 193 AELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPHSSVEGLLESFPIKKMKQ 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ++LG+ TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGISGEEV+ RLLPK
Sbjct: 253 LGGKLGTSLQSDLGINTVGDLLQFSEEKLQQRYGINTGTWLWNIARGISGEEVEGRLLPK 312
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGP+ALKT+ASVQHWLN+L EELSERL SD++QNKRIAHTLTLHA A+K D
Sbjct: 313 SHGSGKTFPGPQALKTIASVQHWLNELGEELSERLDSDMDQNKRIAHTLTLHARAYKKGD 372
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCPLRYGT KIQED LFQ+GLR+FLG + KT GS + W ITALSVS
Sbjct: 373 SDSHKKFPSKSCPLRYGTTKIQEDALTLFQSGLRDFLGLYNSKTNGSE-NKWGITALSVS 431
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSESYSTLNSTELQN 359
ASKIVP+ SGT SI KYF+ GS+S Q DN ID AP SPSGSE+ + ELQ
Sbjct: 432 ASKIVPIPSGTHSITKYFSETFPHGSSSNQSVDNVIDEVAPSSPSGSENCMGVIPNELQL 491
Query: 360 ELPGEQVWIEHSMADLGQLEMKANTWNGL 388
E P E + H A L Q +K +NGL
Sbjct: 492 ECPEEDTGVNHPKACLDQQILKG--FNGL 518
>gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 557
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/401 (65%), Positives = 309/401 (77%), Gaps = 1/401 (0%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML ETPPES++ +D EALKSH+LGL+ ++ +D + V++WL +CD+D+RDKLLACG LIV
Sbjct: 133 MLVETPPESMEAIDVEALKSHVLGLDQEEQSDGQECVRKWLTKCDSDYRDKLLACGTLIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKGLLDSLPIKKMKQ
Sbjct: 193 AELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLDSLPIKKMKQ 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG SGEEVQ RLLP
Sbjct: 253 LGGKLGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGEEVQCRLLPN 312
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGKSFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHTLT HA+A++ SD
Sbjct: 313 SHGSGKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTFHATAYRLSD 372
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCPLRYG AKIQED NLF+AGLR++LGS+ G +GWRIT+LSVS
Sbjct: 373 SDSHKKFPSKSCPLRYGAAKIQEDALNLFKAGLRDYLGSYRANILGDSNNGWRITSLSVS 432
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNE 360
ASKI+ + SG CSI KY + ++SEQ DN I L SG +YS ++S E +E
Sbjct: 433 ASKIMTIPSGMCSITKYLHVQHSSCTSSEQPQDNDIQETALH-SGCTNYSVMDSNEAHDE 491
Query: 361 LPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGT 401
GE++ IE LG + + D S K+ T
Sbjct: 492 RTGEEMKIEDEHDRLGCTDYSVDLCEAFDKSTGEEKEEKAT 532
>gi|145281849|gb|ABP49609.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 442
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/307 (78%), Positives = 270/307 (87%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDKLL+CG++IV
Sbjct: 133 MLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIIIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQ
Sbjct: 193 AELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQ 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPK
Sbjct: 253 LGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPK 312
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S D
Sbjct: 313 SHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKD 372
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT LSVS
Sbjct: 373 SDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRITGLSVS 432
Query: 301 ASKIVPV 307
ASKIV +
Sbjct: 433 ASKIVDI 439
>gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis]
gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis]
Length = 560
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/339 (72%), Positives = 275/339 (81%), Gaps = 25/339 (7%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML +TPP SLD +D+E LKSH+LGL++++GND+K V+EWLCR DADHRDKLLACG +IV
Sbjct: 133 MLKDTPPNSLDVIDDEVLKSHVLGLKNENGNDAKEDVREWLCRNDADHRDKLLACGAIIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELRMQVLKETEFTCSAGIAHNKM + L D KQ
Sbjct: 193 AELRMQVLKETEFTCSAGIAHNKMDCNI--------------------LFDC-----RKQ 227
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQNELGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGI+GEEVQ RLLPK
Sbjct: 228 LGGKLGSSLQNELGVDTVGDLLQFSEEKLQDRYGINTGTWLWNIARGINGEEVQGRLLPK 287
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHGSGKSFPGP+ALKT+ASVQHWLNQLCEELSERLCSDLEQNKR+AHTLTLHASA+KSSD
Sbjct: 288 SHGSGKSFPGPQALKTIASVQHWLNQLCEELSERLCSDLEQNKRMAHTLTLHASAYKSSD 347
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKS PLRYGTAKIQED FNLFQAGLRE+LG+ GVK GSH++GW IT LSVS
Sbjct: 348 SDSHKKFPSKSGPLRYGTAKIQEDAFNLFQAGLREYLGAHGVKVLGSHHNGWGITGLSVS 407
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAA 339
A+KI+ + SGT SIMKYFNG F S+Q PD+FI A
Sbjct: 408 ANKIIDLPSGTSSIMKYFNGQSSFHCPSKQTPDSFIHDA 446
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 502 SNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDE 561
S N V + KE L A + DR Q +R ESW +I+EIDPSVI+ELP EIQDE
Sbjct: 475 SEVNLVELGKESLL--AEHRANYDRHNLTQNAER-ESWNYKIDEIDPSVINELPPEIQDE 531
Query: 562 IQAWLRPSKRPHRVKQGFTIADYFSPSK 589
++AWL+P KR VK+G TIA YFSP K
Sbjct: 532 VRAWLQPHKRARIVKKGATIAHYFSPPK 559
>gi|242054469|ref|XP_002456380.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
gi|241928355|gb|EES01500.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
Length = 636
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 287/599 (47%), Positives = 363/599 (60%), Gaps = 104/599 (17%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML + PP+S +E+ EA KS+ILGL S D + + V+ WLCR DAD++DKLLACG +IV
Sbjct: 133 MLLQAPPDSQEEIFMEAAKSNILGLLS-DAGEKEKNVRAWLCRSDADYQDKLLACGAIIV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L SLP+KKMKQ
Sbjct: 192 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLASLPVKKMKQ 251
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV T+GDLL F+EDKLQE YG NTGTWLW ARGISGEEV+ RLLPK
Sbjct: 252 LGGKLGSSLQDDLGVETIGDLLSFTEDKLQEQYGVNTGTWLWKTARGISGEEVEDRLLPK 311
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTLHA A K ++
Sbjct: 312 SHGCGKTFPGPRALKNSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTLHARASKENE 371
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
DS KKFPSKSCPLRYGT KIQED LF++GL EFL S +GW IT+LSV+
Sbjct: 372 RDSTKKFPSKSCPLRYGTRKIQEDAMKLFESGLHEFLES--------QNTGWSITSLSVT 423
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNE 360
ASKI + SGT SI++Y GP+ AAP P+ +S S L N+
Sbjct: 424 ASKIFDIPSGTSSILRYIKGPN--------------SAAP--PAIPDSSSVPEDPSLDND 467
Query: 361 LPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRM 420
+ + + E PS S K+ + T S S++ + Q + R+
Sbjct: 468 VFVKPIHEEQCQ-----------------PSTS-EKEDNNTHSVSTISAKQCQANKEKRI 509
Query: 421 RSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCL---- 476
K + KG SSIL F G S H+ ++ L+ C
Sbjct: 510 ------------SKKLPEVKGTSSILKFLSRGQ----STFHEKRKSDGLI----CSHQGP 549
Query: 477 ---SESNK-KQVNIPKERLD-NSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQ 531
SE+NK ++ N+P + D N T C S N
Sbjct: 550 GSSSEANKAEENNVPADAEDRNHTNSCAEPSGSN-------------------------- 583
Query: 532 IQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 590
+W I++IDP+V++ELP EIQ EIQ W+RPSK P ++G TI+ YF P+++
Sbjct: 584 ------TWMFNIQDIDPAVVEELPPEIQREIQGWVRPSKHPSTKRRGSTISSYFPPARS 636
>gi|414880429|tpg|DAA57560.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 623
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/599 (46%), Positives = 365/599 (60%), Gaps = 91/599 (15%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLLACG +IV
Sbjct: 107 MVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLACGAIIV 165
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQ
Sbjct: 166 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQ 225
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGISGEEV+ RLLPK
Sbjct: 226 LGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGISGEEVEDRLLPK 285
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTLHA AFK ++
Sbjct: 286 SHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTLHARAFKKNE 345
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
DS KKFPSKSCPLRYGT KIQED LF++GL EFL S +GW IT+LSV+
Sbjct: 346 HDSMKKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQNTGWGITSLSVT 397
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNE 360
ASKI + SGT SI++Y GP + + +PD+ AA L+ +S L N+
Sbjct: 398 ASKIFDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALAI--PDSSFVPEDPSLDND 453
Query: 361 LPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRM 420
+ E + E PS S + + T S+S+ K + ++ R+
Sbjct: 454 VFVEPIHEEE-----------------CQPSTSEKEDDNNTHSASAFSAKKCRANEEKRI 496
Query: 421 RSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDC----- 475
K +G SSIL F G S H+ ++ L+ C
Sbjct: 497 ------------SKKLPGVQGTSSILKFLSRGQ----STLHEKRKSDGLI----CSHQGP 536
Query: 476 --LSESNKKQV-NIPKERLD-NSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQ 531
SE+ K N+P E D N+T C S N
Sbjct: 537 GSSSEAYKAGAHNVPAEAEDRNNTNSCAEPSGSN-------------------------- 570
Query: 532 IQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 590
+W +++IDP+V++ELP EIQ EIQ W+RPSK P ++G TI+ YF P+++
Sbjct: 571 ------TWTFNLQDIDPAVVEELPPEIQREIQGWVRPSKHPITKRRGSTISSYFPPARS 623
>gi|222619273|gb|EEE55405.1| hypothetical protein OsJ_03511 [Oryza sativa Japonica Group]
Length = 621
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 260/322 (80%), Gaps = 9/322 (2%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD++DKLL+CG +IV
Sbjct: 120 MLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADYQDKLLSCGAIIV 178
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQ
Sbjct: 179 AQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQ 238
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPK
Sbjct: 239 LGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPK 298
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL+A A K +
Sbjct: 299 SHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACKKNK 358
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K W IT+LSVS
Sbjct: 359 SDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK--------WSITSLSVS 410
Query: 301 ASKIVPVLSGTCSIMKYFNGPD 322
ASKI + GT SI++Y GP+
Sbjct: 411 ASKIFDIPIGTSSILRYIKGPN 432
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 536 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 589
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 565 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 618
>gi|57900369|dbj|BAD87579.1| putative DNA polymerase [Oryza sativa Japonica Group]
Length = 634
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 260/322 (80%), Gaps = 9/322 (2%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD++DKLL+CG +IV
Sbjct: 133 MLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADYQDKLLSCGAIIV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQ
Sbjct: 192 AQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQ 251
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPK
Sbjct: 252 LGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPK 311
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL+A A K +
Sbjct: 312 SHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACKKNK 371
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K W IT+LSVS
Sbjct: 372 SDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK--------WSITSLSVS 423
Query: 301 ASKIVPVLSGTCSIMKYFNGPD 322
ASKI + GT SI++Y GP+
Sbjct: 424 ASKIFDIPIGTSSILRYIKGPN 445
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 536 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 589
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 631
>gi|115440035|ref|NP_001044297.1| Os01g0757800 [Oryza sativa Japonica Group]
gi|57900368|dbj|BAD87578.1| putative DNA polymerase [Oryza sativa Japonica Group]
gi|113533828|dbj|BAF06211.1| Os01g0757800 [Oryza sativa Japonica Group]
Length = 642
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 260/322 (80%), Gaps = 9/322 (2%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD++DKLL+CG +IV
Sbjct: 133 MLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADYQDKLLSCGAIIV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQ
Sbjct: 192 AQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQ 251
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPK
Sbjct: 252 LGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPK 311
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL+A A K +
Sbjct: 312 SHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACKKNK 371
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K W IT+LSVS
Sbjct: 372 SDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK--------WSITSLSVS 423
Query: 301 ASKIVPVLSGTCSIMKYFNGPD 322
ASKI + GT SI++Y GP+
Sbjct: 424 ASKIFDIPIGTSSILRYIKGPN 445
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 536 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 590
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K+
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAKS 632
>gi|414880431|tpg|DAA57562.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 480
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/342 (63%), Positives = 268/342 (78%), Gaps = 11/342 (3%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLLACG +IV
Sbjct: 133 MVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLACGAIIV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQ
Sbjct: 192 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQ 251
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGISGEEV+ RLLPK
Sbjct: 252 LGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGISGEEVEDRLLPK 311
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTLHA AFK ++
Sbjct: 312 SHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTLHARAFKKNE 371
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
DS KKFPSKSCPLRYGT KIQED LF++GL EFL S +GW IT+LSV+
Sbjct: 372 HDSMKKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQNTGWGITSLSVT 423
Query: 301 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLS 342
ASKI + SGT SI++Y GP + + +PD+ AA L+
Sbjct: 424 ASKIFDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALA 463
>gi|326524061|dbj|BAJ97041.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/320 (65%), Positives = 252/320 (78%), Gaps = 9/320 (2%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML E+PPES + EEA KS+IL L S D D + VK WLCR DAD++DKLLACG ++V
Sbjct: 133 MLLESPPESSGSIFEEATKSNILDLPS-DAGDREENVKAWLCRADADYQDKLLACGAILV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L SLP+KKMKQ
Sbjct: 192 AQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLASLPVKKMKQ 251
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SLQ++LGV TVGDLL F+E+KLQE YG NTGTWLW ARGISGEEV+ RLLPK
Sbjct: 252 LGGKLGSSLQDDLGVETVGDLLGFTEEKLQEYYGVNTGTWLWKTARGISGEEVEDRLLPK 311
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
SHG GK+FPGP+ALK +SV+ WL++LCEELSER+ SDL NKR+A TLTL A A K ++
Sbjct: 312 SHGCGKTFPGPKALKNNSSVKSWLDKLCEELSERIQSDLSCNKRVAQTLTLQARASKENE 371
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 300
+S KKFPSKSCPLRYGT KIQED LF++GL +F GS +GW IT+LSV+
Sbjct: 372 GNSMKKFPSKSCPLRYGTGKIQEDAMKLFESGLHDFW--------GSQNAGWSITSLSVT 423
Query: 301 ASKIVPVLSGTCSIMKYFNG 320
ASKI + SGT SI+KY G
Sbjct: 424 ASKIFDIPSGTNSILKYIKG 443
>gi|357136514|ref|XP_003569849.1| PREDICTED: DNA polymerase eta-like [Brachypodium distachyon]
Length = 632
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/317 (64%), Positives = 249/317 (78%), Gaps = 9/317 (2%)
Query: 2 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 61
L E+PPES + + EEA KS+IL L S D ++ + V+ WLCR DAD++DKLLACG +IV
Sbjct: 134 LLESPPESSEIIFEEATKSNILDLSS-DVSNREENVRAWLCRADADYQDKLLACGAIIVA 192
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L SLP+KKMKQL
Sbjct: 193 QLRIKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLASLPVKKMKQL 252
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
GGKLG+SLQ++LGV TVGDLL F+E+KLQ+ YG NTGTWLW ARGISGEEV+ R+LPKS
Sbjct: 253 GGKLGSSLQDDLGVKTVGDLLTFTEEKLQDYYGVNTGTWLWKTARGISGEEVEDRILPKS 312
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 241
HG GK+FPG +ALK ASV+ WL++LCEELSER+ SDL NKR+A TLTLHA A K ++
Sbjct: 313 HGCGKTFPGSKALKNNASVKSWLDKLCEELSERIQSDLNSNKRVAQTLTLHARACKENEC 372
Query: 242 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSA 301
+ KKFPSKSCPLRYGT KIQED LF++ L +F GS +GW IT+LSV+A
Sbjct: 373 NLMKKFPSKSCPLRYGTGKIQEDAMKLFESALHDFW--------GSRNTGWSITSLSVTA 424
Query: 302 SKIVPVLSGTCSIMKYF 318
SKI SGT SI++Y
Sbjct: 425 SKIFDDTSGTNSILRYI 441
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 539 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 590
W +E+IDP+V+ ELP EIQ EIQ W RPSK+ +G TI+ YF P+++
Sbjct: 581 WMFNVEDIDPAVVGELPLEIQREIQGWTRPSKQASTKPRGHTISSYFPPARS 632
>gi|449434198|ref|XP_004134883.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 506
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/237 (76%), Positives = 210/237 (88%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML ETPPES++ +D EALKSH+LGL+ ++ +D + V++WL +CD+D+RDKLLACG LIV
Sbjct: 138 MLVETPPESMEAIDVEALKSHVLGLDQEEQSDGQECVRKWLTKCDSDYRDKLLACGTLIV 197
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKGLLDSLPIKKMKQ
Sbjct: 198 AELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLDSLPIKKMKQ 257
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG SGEEVQ RLLP
Sbjct: 258 LGGKLGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGEEVQCRLLPN 317
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
SHGSGKSFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHTLT HA+A++
Sbjct: 318 SHGSGKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTFHATAYR 374
>gi|145281847|gb|ABP49608.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 350
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 156/201 (77%), Positives = 180/201 (89%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDKLL+CG++IV
Sbjct: 133 MLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIIIV 192
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQ
Sbjct: 193 AELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQ 252
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPK
Sbjct: 253 LGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPK 312
Query: 181 SHGSGKSFPGPRALKTVASVQ 201
SHGSGK+FPGPRALK++++V+
Sbjct: 313 SHGSGKTFPGPRALKSLSTVR 333
>gi|302770725|ref|XP_002968781.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
gi|300163286|gb|EFJ29897.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
Length = 444
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/297 (59%), Positives = 210/297 (70%), Gaps = 5/297 (1%)
Query: 13 VDEEALKSHILGLESKDGNDSKATV--KEWLCRCDADHRDKLLACGVLIVTELRMQVLKE 70
V EEA SHI+GL +S A + KEW CR DA D LLACG +I+ ++R+ VL E
Sbjct: 142 VSEEASTSHIVGLPQVRWLESSAKLGTKEWFCRPDASREDHLLACGAIIIADIRLAVLAE 201
Query: 71 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 130
TEFTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V+ LL +LPI K+ +LGGKLG L+
Sbjct: 202 TEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESLLATLPISKIGKLGGKLGQELE 261
Query: 131 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 190
ELGV TVGDLL+FSE KLQ+ YG NTGTWLWN ARGI+G+EVQ R LPKSH SGK+FPG
Sbjct: 262 GELGVKTVGDLLQFSELKLQDMYGPNTGTWLWNTARGINGDEVQDRTLPKSHSSGKTFPG 321
Query: 191 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 250
PRALKT+ +V +WL +L E L RL DL QN R AH LT+HAS S + KF SK
Sbjct: 322 PRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLLTIHASCHIVSRATEAPKFSSK 381
Query: 251 SCPLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKTQGSHYSGWRITALSVSASKIV 305
S PLRYG KI ED+ LF+ L EF S G K Q S W +T LS++AS I+
Sbjct: 382 SRPLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KEQSEITSSWAVTGLSLTASNIM 437
>gi|302822456|ref|XP_002992886.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
gi|300139334|gb|EFJ06077.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
Length = 436
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 175/295 (59%), Positives = 207/295 (70%), Gaps = 9/295 (3%)
Query: 13 VDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETE 72
V EEA SHI+GL + G KEW CR DA D LLACG +IV ++R+ VL ETE
Sbjct: 142 VSEEASTSHIVGLPQELGT------KEWFCRPDASREDHLLACGAIIVADIRLAVLAETE 195
Query: 73 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 132
FTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V+ LL +LPI K+ +LGGKLG L+ E
Sbjct: 196 FTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESLLATLPISKIGKLGGKLGQELEGE 255
Query: 133 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 192
LGV TVGDLL+FSE KLQ+ YG NTGTWLWN ARGI+G+EVQ R LPKSH SGK+FPGPR
Sbjct: 256 LGVKTVGDLLQFSEVKLQDMYGPNTGTWLWNTARGINGDEVQDRTLPKSHSSGKTFPGPR 315
Query: 193 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSC 252
ALKT+ +V +WL +L E L RL DL QN R AH LT+HAS + KF SKS
Sbjct: 316 ALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLLTIHASCHIEGRATEAPKFSSKSR 375
Query: 253 PLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKTQGSHYSGWRITALSVSASKIV 305
PLRYG KI ED+ LF+ L EF S G K Q S W +T LS++AS I+
Sbjct: 376 PLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KEQSEITSSWAVTGLSLTASNIM 429
>gi|168033798|ref|XP_001769401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679321|gb|EDQ65770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 446
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/301 (52%), Positives = 201/301 (66%), Gaps = 7/301 (2%)
Query: 9 SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVL 68
SL + EEA K+HILGLE +DG ++ T EWLC+ + D LLACG LIV ELR VL
Sbjct: 140 SLGTLSEEARKTHILGLE-EDGENA-MTAGEWLCQSNVPRCDALLACGALIVAELRAAVL 197
Query: 69 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 128
ET+FTCSAGI HNKMLAKL S M+KPAQQT +P S V LL ++P+KK+ LGGKLG S
Sbjct: 198 AETQFTCSAGIGHNKMLAKLTSSMHKPAQQTLIPSSYVPTLLATIPLKKIGHLGGKLGKS 257
Query: 129 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 188
L +LGV T GDL++FS+ KLQE YG NTG WLW++ARG +G+EV+A++LPKS GK+F
Sbjct: 258 LTEDLGVKTPGDLIQFSKLKLQELYGVNTGNWLWDVARGKNGDEVKAKVLPKSISCGKTF 317
Query: 189 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA-FKSSDSDSRKKF 247
G AL + SV +WL ++C+EL E+L DLE + R A L HA+ + + KKF
Sbjct: 318 AGRTALTNMTSVMYWLGEMCDELQEKLDIDLEVHNRKAKLLVFHAAVQLRGGNPQPGKKF 377
Query: 248 PSKSCPLRYGTAKIQEDTFNLFQAGLREFL----GSFGVKTQGSHYSGWRITALSVSASK 303
PSKSCP+RYG KI D LF+ GLR+F VK + W +TALS+ A
Sbjct: 378 PSKSCPIRYGKEKILADARILFERGLRDFCPVNKSLSPVKGSSNSKCEWAVTALSIGAGG 437
Query: 304 I 304
I
Sbjct: 438 I 438
>gi|125527765|gb|EAY75879.1| hypothetical protein OsI_03798 [Oryza sativa Indica Group]
Length = 498
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/229 (62%), Positives = 173/229 (75%), Gaps = 26/229 (11%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLES--------------------------KDGNDSK 34
ML E+PPE L+ + EEA KS+ILGL S +D + +
Sbjct: 133 MLLESPPELLELIFEEATKSNILGLPSVIFVLHDLIVVSLQFDMNVTNRASYVQDVINRE 192
Query: 35 ATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 94
+V+ WLCR DAD++DKLL+CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+K
Sbjct: 193 DSVRAWLCRADADYQDKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHK 252
Query: 95 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 154
PAQQT VP S+V+ L SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG
Sbjct: 253 PAQQTVVPSSAVQDFLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYG 312
Query: 155 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 203
NTGTWLW IARGISGEEV+ RLLPKSHG GK+FPGP+ALK ASV+ +
Sbjct: 313 VNTGTWLWKIARGISGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKEF 361
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 536 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 589
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 442 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 495
>gi|414884037|tpg|DAA60051.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 397
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 143/185 (77%), Gaps = 2/185 (1%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLL CG +IV
Sbjct: 208 MLLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLPCGAIIV 266
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQ
Sbjct: 267 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQ 326
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG-TWLWNIARGISGEEVQARLLP 179
LGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTG + AR +E ++L
Sbjct: 327 LGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGHGMVAAFARAAWLKEYHEKVLV 386
Query: 180 KSHGS 184
+ +GS
Sbjct: 387 EIYGS 391
>gi|348501702|ref|XP_003438408.1| PREDICTED: DNA polymerase eta [Oreochromis niloticus]
Length = 685
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 168/297 (56%), Gaps = 22/297 (7%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G LIV E+R V K T F CSAGI+HNK+LAKLA G+NKP +QT +P SV L S
Sbjct: 198 LTVGALIVEEMRAAVEKHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLDSVTELFSS 257
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP+ K++ LGGKLGTS+ LG+ +GDL +FS+ +L++ +G TG WL+++ RGI E
Sbjct: 258 LPVGKIRNLGGKLGTSITETLGIENMGDLTRFSKAQLEQHFGEKTGQWLYDLCRGIDFEA 317
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ R LPKS G K+FPG +L T VQ+WL+QL EL ERL D E N R+A LT+
Sbjct: 318 VKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTKDREVNGRVAKMLTVG 377
Query: 233 ASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
D R S+ C L RY KI DTF + ++ + T G+H +
Sbjct: 378 VRQL----GDKRMSSFSRCCALVRYEATKISSDTFAIIKS----------LNTAGNHQAA 423
Query: 292 WR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGS 346
W ++ L +SASK V S I + + STS Q P +P +GS
Sbjct: 424 WTPPLSMLYLSASKFSDV-SSAGGIAGFLSS----DSTSTQPPREPKHVSPCKQTGS 475
>gi|414884038|tpg|DAA60052.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 585
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLL CG +IV
Sbjct: 208 MLLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLPCGAIIV 266
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQ
Sbjct: 267 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQ 326
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 158
LGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTG
Sbjct: 327 LGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTG 364
>gi|414884035|tpg|DAA60049.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 378
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLL CG +IV
Sbjct: 1 MLLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLPCGAIIV 59
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQ
Sbjct: 60 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQ 119
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 158
LGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTG
Sbjct: 120 LGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTG 157
>gi|432904760|ref|XP_004077403.1| PREDICTED: DNA polymerase eta-like [Oryzias latipes]
Length = 708
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 152/255 (59%), Gaps = 17/255 (6%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G LIV E+R V K+T F CSAGI+HNK+LAKLA G+NKP +QT +P SV L +S
Sbjct: 201 LTMGALIVEEMRAAVEKQTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLESVTELFNS 260
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI K++ LGGK+G S+ L V +GDL +FS+ +L + +G TG WL+++ RG+ E
Sbjct: 261 LPIGKIRNLGGKMGASIIETLKVENMGDLTRFSQSQLVQHFGEKTGQWLYDLCRGVESEA 320
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ R LPKS G K+FPG +L T VQ+WL+QL EL ERL D E N R+A LT+
Sbjct: 321 VKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLNKDKETNGRVAKLLTVG 380
Query: 233 ASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
D R S+ C L Y AK+ D+F + ++ + T G+H +
Sbjct: 381 VRQL----GDKRPSSFSRCCALVHYEAAKLSSDSFAIIKS----------LNTAGNHQAA 426
Query: 292 WR--ITALSVSASKI 304
W +T L +SASK
Sbjct: 427 WTPPLTLLHLSASKF 441
>gi|410901122|ref|XP_003964045.1| PREDICTED: DNA polymerase eta-like [Takifugu rubripes]
Length = 707
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 149/255 (58%), Gaps = 17/255 (6%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G LIV E+R V K T F CSAGI+HNK+LAKLA G+NKP +QT +P SV+ L S
Sbjct: 192 LTVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPLDSVRDLFSS 251
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP+ K++ LGGKLG S+ LGV +G+L +FS +L + +G TG WL+++ RGI E
Sbjct: 252 LPVGKIRNLGGKLGASITETLGVENMGELTRFSLAQLGQHFGEKTGQWLYDLCRGIDFEA 311
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ R LPKS G K+FPG +L T VQ+WL+QL EL ERL D E N R+A LT+
Sbjct: 312 VKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTKDREVNGRVAKLLTVG 371
Query: 233 ASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
D R S+ C L RY K+ D+F + ++ + T G+H
Sbjct: 372 VRQL----GDKRANSFSRCCALVRYEAPKLATDSFAIIRS----------LNTAGAHQET 417
Query: 292 WR--ITALSVSASKI 304
W + L +SASK
Sbjct: 418 WTPPLAMLHLSASKF 432
>gi|94158209|ref|NP_001035337.1| DNA polymerase eta [Danio rerio]
gi|92098322|gb|AAI15308.1| Zgc:136881 [Danio rerio]
Length = 743
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 182/336 (54%), Gaps = 29/336 (8%)
Query: 9 SLDEVDEEALK-SHILGLESKDGN-------DSKATVKEWL----CRCDADHRDKLLACG 56
S+ ++ + LK +HI G ++ N A +++WL ++ D LA G
Sbjct: 133 SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSSSTESSPADLHLAVG 192
Query: 57 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 116
LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT +P SSV L +LPI
Sbjct: 193 ALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLSSVPQLFSTLPIS 252
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 176
K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG WL+++ RGI E V+ R
Sbjct: 253 KIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDLCRGIEFEPVKPR 312
Query: 177 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
LPKS G K+F G L+T VQ+WL+QL EL ERL D + N R+A LT+
Sbjct: 313 QLPKSIGCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVNGRVARQLTVGVRQA 372
Query: 237 KSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR-- 293
S S S+ C L RY K+ D+ + ++ + T G+H W
Sbjct: 373 GGQRSGSF----SRCCALVRYDAMKMTNDSLTIIKS----------LNTAGAHQEAWSPA 418
Query: 294 ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSE 329
+T L +SASK S + + + F D S S+
Sbjct: 419 LTLLHLSASKFSDAPSSSSAGITGFLSSDAASSPSQ 454
>gi|390332295|ref|XP_001183938.2| PREDICTED: DNA polymerase eta-like [Strongylocentrotus purpuratus]
Length = 774
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 178/328 (54%), Gaps = 27/328 (8%)
Query: 7 PESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHRDKLLACGVLIVTELRM 65
PE L + + H + E D D K ++ WL AD K L G LI E+R
Sbjct: 280 PEQLHQT---FIAGHDVAEEGVDIEDVRKRGLETWLT--SADLATKRLGVGALIAEEMRA 334
Query: 66 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 125
V K+T F CSAGI+HNKMLAK+A G +KP +Q+ +P + + ++PI+K + LGGKL
Sbjct: 335 AVFKDTGFRCSAGISHNKMLAKIACGFHKPNRQSVLPPEGLDKVYKTIPIRKFRNLGGKL 394
Query: 126 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 185
G S+ +LGV +GDLL+++E +LQ+ Y TGTWL++I RGI E V+ R L KS G
Sbjct: 395 GHSISEDLGVEYMGDLLRYTEKQLQKRYSEKTGTWLYSICRGIDDEPVRPRQLAKSTGCS 454
Query: 186 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS-AFKSSDSDSR 244
K+FPG AL T V+HW L EE+ RL + E N R A LT+ A K + +
Sbjct: 455 KTFPGKNALDTRDKVKHWFRSLAEEVEHRLLREEETNNRTAKHLTVSVGQAGKPLMTTA- 513
Query: 245 KKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSA 301
S+SC + + + KI +D F++ Q + G+H + W IT L +SA
Sbjct: 514 ----SRSCAIHQISSEKIAKDCFSVIQ----------NLNHAGNHQAAWSPAITYLGISA 559
Query: 302 SKIVPVLSGTCSIMKYF--NGPDKFGST 327
SK V S ++ F +GP K +T
Sbjct: 560 SKFVEGGSSKSGSIQSFLSSGPSKPATT 587
>gi|449496783|ref|XP_004174688.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase eta [Taeniopygia
guttata]
Length = 699
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 170/326 (52%), Gaps = 33/326 (10%)
Query: 20 SHILGLESKDGNDSKAT-------VKEWLCRCDADHRD---KLLACGVLIVTELRMQVLK 69
+ + GL + G D + EWL D+ D L G +IV E+R+ V +
Sbjct: 145 TFVQGLPGEPGPDPAGKEELRQRGLDEWLASLSFDNPDCPDLQLTMGAVIVEEIRVAVEE 204
Query: 70 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 129
T F CSAGI+HNK LAKLA G+NKP +QT V V L LP+ ++ LGGKLGT++
Sbjct: 205 ATGFRCSAGISHNKTLAKLACGLNKPNRQTLVSARFVPQLFSQLPVSSIRNLGGKLGTAI 264
Query: 130 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 189
+ LGV +G+L +FSE +LQ +G TG+WL+++ RGI E V+ R LP+S G K+FP
Sbjct: 265 TDILGVEYIGELTQFSETELQTHFGDKTGSWLYDLCRGIEEEPVKNRYLPQSIGCSKNFP 324
Query: 190 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 249
G AL T +VQHWL QL EL RL D QN R+A L + D+R S
Sbjct: 325 GKLALATQKAVQHWLLQLALELESRLNKDRSQNHRVARQLMV----VIRQQGDTRV---S 377
Query: 250 KSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV--SASKIVP 306
+ C L RY K+ D F L Q G+H + W +SV SASK
Sbjct: 378 RLCALSRYDAQKMCNDAFTLIQT----------CNVAGAHQAAWSPPLISVQLSASKFSE 427
Query: 307 VLSGTCSIMKYFNG---PDKFGSTSE 329
++ + I + G PD +TS+
Sbjct: 428 PITLSTGIATFLTGDAQPDGTATTSQ 453
>gi|53134355|emb|CAG32324.1| hypothetical protein RCJMB04_23b13 [Gallus gallus]
Length = 693
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 159/288 (55%), Gaps = 24/288 (8%)
Query: 24 GLESKDGND-SKATVKEWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGI 79
GL+ D + + ++EWL D+ D LA G +IV E+R+ V K T F CSAGI
Sbjct: 155 GLQPADKEELRRRGLQEWLASLSFDNVNCPDLQLAMGAVIVEEIRVAVEKATGFRCSAGI 214
Query: 80 AHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVG 139
+HNKMLAKLA G+NKP +QT V SV L +P+ ++ LGGKLG ++ + LGV +G
Sbjct: 215 SHNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIG 274
Query: 140 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 199
++ KFSE +LQ +G TG+WL+++ RGI E V+ R LP+S G K+FPG AL T
Sbjct: 275 EVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKE 334
Query: 200 VQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGT 258
VQHWL QL EL RL D QN R+A L + D+R S+ C + RY
Sbjct: 335 VQHWLLQLALELESRLIKDRSQNHRVAKQLMV----VIRMQGDTRL---SRFCAVTRYDA 387
Query: 259 AKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV--SASKI 304
KI D F L Q G+H + W +SV +ASK
Sbjct: 388 QKIFNDAFALIQ----------NCNMAGAHQAAWSPPLISVHLAASKF 425
>gi|50838832|ref|NP_001001304.1| DNA polymerase eta [Gallus gallus]
gi|31442180|dbj|BAC77302.1| polymerase eta [Gallus gallus]
Length = 673
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 159/288 (55%), Gaps = 24/288 (8%)
Query: 24 GLESKDGND-SKATVKEWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGI 79
GL+ D + + ++EWL D+ D LA G +IV E+R+ V K T F CSAGI
Sbjct: 155 GLQPADKEELRRRGLQEWLASLSFDNVNCPDLQLAMGAVIVEEIRVAVEKATGFRCSAGI 214
Query: 80 AHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVG 139
+HNKMLAKLA G+NKP +QT V SV L +P+ ++ LGGKLG ++ + LGV +G
Sbjct: 215 SHNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIG 274
Query: 140 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 199
++ KFSE +LQ +G TG+WL+++ RGI E V+ R LP+S G K+FPG AL T
Sbjct: 275 EVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKE 334
Query: 200 VQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGT 258
VQHWL QL EL RL D QN R+A L + D+R S+ C + RY
Sbjct: 335 VQHWLLQLALELESRLIKDRSQNHRVAKQLMV----VIRMQGDTRL---SRFCAVTRYDA 387
Query: 259 AKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV--SASKI 304
KI D F L Q G+H + W +SV +ASK
Sbjct: 388 QKIFNDAFALIQ----------NCNMAGAHQAAWSPPLISVHLAASKF 425
>gi|326915374|ref|XP_003203993.1| PREDICTED: DNA polymerase eta-like [Meleagris gallopavo]
Length = 554
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 159/295 (53%), Gaps = 26/295 (8%)
Query: 37 VKEWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 93
++EWL D+ D L+ G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+N
Sbjct: 30 LQEWLASLSFDNLNCPDLQLSMGAVIVEEMRVAVEKATGFRCSAGISHNKMLAKLACGLN 89
Query: 94 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 153
KP +QT V SV L +P+ ++ LGGKLG ++ + LGV +G + +FSE +LQ +
Sbjct: 90 KPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGQVTQFSEMELQTHF 149
Query: 154 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
G TG+WL+++ RGI E V+ R LP+S G K+FPG AL T VQHWL QL EL
Sbjct: 150 GDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELES 209
Query: 214 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAG 272
RL D QN R+A L + D+R S+ C + RY KI D F L Q
Sbjct: 210 RLIKDRSQNHRVAKQLMV----VIRMQGDTRL---SRFCAVTRYDAQKIFSDAFALIQ-- 260
Query: 273 LREFLGSFGVKTQGSHYSGWRITALSV--SASKI-VPVL--SGTCSIMKYFNGPD 322
G+H + W +SV +ASK P +G S + PD
Sbjct: 261 --------NCNMAGTHQAAWSPPLISVHLAASKFSAPTFLSAGIASFLTSDTSPD 307
>gi|60686908|gb|AAX35543.1| DNA polymerase eta [Xenopus laevis]
Length = 684
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 148/263 (56%), Gaps = 17/263 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D LA G +IV E+R V +ET F CSAGIAHNK+LAKLA G+NKP +QT +
Sbjct: 181 DPHSADVKLAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQG 240
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV GL LPI K++ LGGKLGTS++ L V +G L +F+ LQ +G TG+WL+++
Sbjct: 241 SVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLYSL 300
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI E V+ R LPKS G K+FPG +L T VQ+WL QL EL RL D + N R
Sbjct: 301 CRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDANNR 360
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A LT+ + S S+ C L RY KI D F L L SF
Sbjct: 361 VAKLLTVGLNQMGKRLYGSM----SRCCALTRYDAQKISSDAFVL--------LKSFNAA 408
Query: 284 TQGSHYSGWR--ITALSVSASKI 304
G H + W +T L +SASK
Sbjct: 409 --GMHQAAWSPPLTLLQLSASKF 429
>gi|148227394|ref|NP_001087074.1| DNA-directed DNA polymerase eta [Xenopus laevis]
gi|50417752|gb|AAH77989.1| Polh-prov protein [Xenopus laevis]
Length = 684
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 148/263 (56%), Gaps = 17/263 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D LA G +IV E+R V +ET F CSAGIAHNK+LAKLA G+NKP +QT +
Sbjct: 181 DPHSADVKLAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQG 240
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV GL LPI K++ LGGKLGTS++ L V +G L +F+ LQ +G TG+WL+++
Sbjct: 241 SVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLYSL 300
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI E V+ R LPKS G K+FPG +L T VQ+WL QL EL RL D + N R
Sbjct: 301 CRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDANNR 360
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A LT+ + S S+ C L RY KI D F L L SF
Sbjct: 361 VAKLLTVGLNQMGKRLYGSM----SRCCALTRYDAQKISSDAFVL--------LKSFNAA 408
Query: 284 TQGSHYSGWR--ITALSVSASKI 304
G H + W +T L +SASK
Sbjct: 409 --GMHQAAWSPPLTLLQLSASKF 429
>gi|340368085|ref|XP_003382583.1| PREDICTED: DNA polymerase eta-like [Amphimedon queenslandica]
Length = 583
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 156/265 (58%), Gaps = 18/265 (6%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
C +D R +L ++V +R +L E FTCSAGI+HNKMLAKLA+GM+KP QQT +P
Sbjct: 178 CSSDER--VLIVAAILVQRIRETILNEVGFTCSAGISHNKMLAKLAAGMHKPNQQTILPQ 235
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
S V + + +KK++ LGGKLG +Q++L + VG L ++S LQE +G TG+WL+
Sbjct: 236 SQVDVVFSTTLLKKVRHLGGKLGEQVQDKLKIECVGQLQEYSLKVLQEKFGLKTGSWLYE 295
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
+ RGI E++ R++ KS G GK+FPGP LKT +V++WL QL EL ERL D+ +N
Sbjct: 296 LCRGICHEKISNRIITKSIGCGKNFPGPSKLKTAKAVKYWLEQLSRELVERLEEDMTENT 355
Query: 224 RIAHTLTLHASAFKSSDSDSRK-KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
R A ++T+H + S +R PS Y T+ I +++N G + V
Sbjct: 356 RQAQSITVHFLPEGQASSVARTFALPS------YNTSLIVNNSWNAINKGHKP------V 403
Query: 283 KTQGSHYSGWR--ITALSVSASKIV 305
+ SH + W I + +SA K V
Sbjct: 404 TNEESHLT-WTTGILNIHLSAGKFV 427
>gi|321458271|gb|EFX69342.1| hypothetical protein DAPPUDRAFT_228708 [Daphnia pulex]
Length = 695
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 176/335 (52%), Gaps = 16/335 (4%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWL---CRCDADHRDKLLACGV 57
ML+++ ++D EE ++ +G D +D K V WL + + D L G
Sbjct: 130 MLSDSTATAIDL--EELPNTYFVGW-GNDTDDVKG-VHGWLQALSEGNYNDNDWKLTYGA 185
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++V ++R V ++T F CSAGI++NKMLAKLA G+NKP +QT +PF SV+ + P+KK
Sbjct: 186 ILVEKMRAAVYEKTGFRCSAGISNNKMLAKLACGINKPNKQTVLPFRSVEEFFTTFPLKK 245
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
++ LGGKLG L+ E TT+ D++K E LQE + T TWL+ ARG+ E V +R
Sbjct: 246 VRNLGGKLGLVLREEFHCTTMADIVKIPERVLQERFDSKTATWLFWYARGVDHESVSSRR 305
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
LPKS G K+F G AL + + HWL +LC E+SERL D E N R A LTL
Sbjct: 306 LPKSIGCNKNFTGLAALDSREKISHWLEELCAEVSERLEKDRETNNRTAKLLTLTVRL-- 363
Query: 238 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 297
+ D R ++S PL K+ ++ A L QG+ +T L
Sbjct: 364 --EGDIRPYSYTRSIPLTSSYEKM-----HMANACLAVISKENPCFKQGNTRVPVVVTCL 416
Query: 298 SVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLP 332
VSASK V L I ++F + + E+ P
Sbjct: 417 GVSASKFVDQLENNSRIDRFFVTKNSAETNKEKEP 451
>gi|443700616|gb|ELT99496.1| hypothetical protein CAPTEDRAFT_172544 [Capitella teleta]
Length = 620
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 171/321 (53%), Gaps = 24/321 (7%)
Query: 20 SHILGLESKDGNDSKATVKE-----WL-CRCDA---DHRDKLLACGVLIVTELRMQVLKE 70
+++LG E ++ K+ +E WL + DA + +K LA G +IV E+R +V
Sbjct: 143 TYVLGCEEEEKCTDKSVQRERGLITWLRSQSDAHTVNEHEKQLAVGAVIVEEMRARVHTV 202
Query: 71 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 130
T F CSAGIA NKMLAKL G+NKP +QT +PFS++ + +KK++ GGK G S+
Sbjct: 203 TGFRCSAGIASNKMLAKLVCGINKPNKQTLLPFSNILHFFGGVKVKKVRGFGGKFGESVC 262
Query: 131 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 190
+L V T+GD+ +FS ++LQE +G TG+WL++ RG E+V R L KS G K+F G
Sbjct: 263 EQLQVETMGDIRRFSRNQLQECFGDKTGSWLYDTCRGQETEDVIDRQLTKSVGCSKNFRG 322
Query: 191 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 250
P L T V+ WL+++ +E+ ERL D N R+A +L +H + S + S
Sbjct: 323 PEMLVTKEQVKLWLSRMSKEIEERLLKDRASNNRVAKSLHVHIQYVVNKKVTSASRCASL 382
Query: 251 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKIVPVL 308
+RY K+ +D + L R L H S W IT + +SASK +
Sbjct: 383 ---VRYNAQKLADDAYLLLSKFNRSLL----------HQSSWSPPITCMGISASKFSDLS 429
Query: 309 SGTCSIMKYFNGPDKFGSTSE 329
+ I + P F S S+
Sbjct: 430 NTGRDIKSFLQDPSAFPSVSQ 450
>gi|395832422|ref|XP_003789270.1| PREDICTED: DNA polymerase eta [Otolemur garnettii]
Length = 414
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 134/227 (59%), Gaps = 5/227 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D+ D L G +IV E+R + K+T F CSAGI+HNK+LAKLA G+NKP +QT V +
Sbjct: 182 DSTSPDLQLTVGAMIVEEMRAAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHA 241
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 242 SVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGGKNGSWLYAM 301
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R
Sbjct: 302 CRGIEHDPVKPRQLPKTIGCSKNFPGKTALSTREQVQWWLLQLAQELEERLTKDRNDNDR 361
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+A LT+ D R + C L RY K+ D F + +
Sbjct: 362 VATQLTVSIRV----QGDKRLSSLRRCCALSRYDAYKMSHDAFAVIK 404
>gi|384245783|gb|EIE19275.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169]
Length = 454
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 155/289 (53%), Gaps = 24/289 (8%)
Query: 51 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
+LLACG +V ELR V +E ++CSAGIAHNK+LAKLASGM+KP+QQT V V GL+
Sbjct: 150 RLLACGAAVVAELRAAVRRELGYSCSAGIAHNKILAKLASGMHKPSQQTLVTLDCVPGLM 209
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
LPI K++QLGGK G + L +TTVG+L +L+ WL ++RGI
Sbjct: 210 AGLPIPKLRQLGGKFGEEIMTALNITTVGELSAVPLRRLEAVCSQADALWLHRLSRGIDD 269
Query: 171 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 230
EEV+ R LP+S GK+F G ALK +V WL +L +EL ER+ +D N+R+ LT
Sbjct: 270 EEVKERQLPQSISCGKTFRGHTALKAFPAVHKWLGELGDELEERITADRADNERVPRLLT 329
Query: 231 LHASAFKSSDSDSRKKFPSKSCPLRYGTAK-IQEDTFNLFQAGLREFLGSFGVKTQGSHY 289
+ + + S+SC LR ++ + ED L +K S
Sbjct: 330 V--GMWGEGGPGTSGGSVSRSCQLRRPESQPMAEDGLKL-------------IKRWASDR 374
Query: 290 SGWRITALSVSASKIVPVLSGTCSIMKYF--------NGPDKFGSTSEQ 330
GW IT+L ++AS +G+ +I ++ P GST+ Q
Sbjct: 375 PGWAITSLYMTASNFQAAPTGSSTITRFLKPKSAPGQQSPPPSGSTAAQ 423
>gi|348576228|ref|XP_003473889.1| PREDICTED: DNA polymerase eta-like [Cavia porcellus]
Length = 712
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 159/293 (54%), Gaps = 17/293 (5%)
Query: 34 KATVKEWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 90
K + EWL D+ D L G LIV E+R + ++T F CSAGI+HNK+LAKLA
Sbjct: 169 KRGLYEWLDSLQIDNLASPDLQLTVGALIVEEMRAAIERQTGFQCSAGISHNKVLAKLAC 228
Query: 91 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 150
G+NKP +QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ
Sbjct: 229 GLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGELTQFTESQLQ 288
Query: 151 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 210
+G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +E
Sbjct: 289 NHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQE 348
Query: 211 LSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLF 269
L ERL D + N R+A L + D R + C L RY K+ +D F +
Sbjct: 349 LEERLTKDQKDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSQDAFAVI 404
Query: 270 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
+ + G++T+ S +T L + A+K +C+ + F D
Sbjct: 405 RN-----CNTSGIQTEWSP----PLTMLFLCATKFSVSAPASCTDITAFLSSD 448
>gi|73973002|ref|XP_532150.2| PREDICTED: DNA polymerase eta [Canis lupus familiaris]
Length = 712
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 166/325 (51%), Gaps = 22/325 (6%)
Query: 7 PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR---DKLLACGVL 58
P S D + ++ G + +G D K + +WL D+ D L G +
Sbjct: 136 PISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNNTSPDLQLTVGAV 195
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI K+
Sbjct: 196 IVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPISKI 255
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R L
Sbjct: 256 RSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQL 315
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
PK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L +
Sbjct: 316 PKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV--- 372
Query: 239 SDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 297
D R + C L RY K+ D F + + + G+KT S +T L
Sbjct: 373 -QGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKN-----CNTSGIKTDWSP----PLTML 422
Query: 298 SVSASKIVPVLSGTCSIMKYFNGPD 322
+ A+K +C+ + F D
Sbjct: 423 FLCATKFSAPAPSSCTDITTFLSSD 447
>gi|307168868|gb|EFN61792.1| DNA polymerase eta [Camponotus floridanus]
Length = 764
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 156/548 (28%), Positives = 256/548 (46%), Gaps = 65/548 (11%)
Query: 48 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 107
H KL GV IV E+R + KET+F CSAGIA NK+LAKLA G++KP QT +P ++V
Sbjct: 125 HAQKLAVAGV-IVEEIRASIYKETKFRCSAGIAQNKILAKLACGLHKPNCQTILPKTAVS 183
Query: 108 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 167
L +LP+KK++ LGGK G + LG +GDL+++S ++LQ+ + TG WL+NIARG
Sbjct: 184 SLFSTLPVKKVRNLGGKFGDIVVESLGCNVMGDLVQYSLEQLQKRFDEKTGFWLYNIARG 243
Query: 168 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 227
I E V RLL KS + K FPG +A+ ++ ++HW L E+ ERL D E+N+R A
Sbjct: 244 IDDEPVTNRLLSKSIAACKKFPGKQAITSLEVLKHWAKDLTAEVCERLEQDYEENQRRAT 303
Query: 228 TLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 286
LT+ +++ + S+ ++S L Y KI ++ TQ
Sbjct: 304 LLTISYHYYQNRSTVSQ----TRSLVLNSYKPDKIASQCVDVITKA-----------TQC 348
Query: 287 SHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGS 346
+ + +SASK VP S +K+F S++ ID + + S
Sbjct: 349 P------VAYMGISASKFVPSKESD-SFLKFFKNVTSRDRKSDKASSE-IDKSGIVYSPR 400
Query: 347 ESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSS 406
++ + E++ E P V E S + K + S + + + S
Sbjct: 401 NMINSSSHLEIKEEKPFTIVSKEDSFLKAERKLQKIKESPMIKKSVTRTNERIIKTSEKI 460
Query: 407 LDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSI------------LNFFKSG-- 452
L+ + N +DS + +K Q +++ LKDK S + +N +K+G
Sbjct: 461 LNNSLNMNSEDSPISKRVVKLVQVCNERDKLKDKRLSDVKINKNDFQDSFFMNIYKTGKQ 520
Query: 453 ---DLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGD-----CLSESNQ 504
D GN D + E + KQ ++ E+ NS D C+ E +
Sbjct: 521 EYPDNESMDGNIDVKQLEY-----------DGKQSSV-DEKSANSIDDYNSNLCIQEDAR 568
Query: 505 NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLR-----IEEIDPSVIDELPKEIQ 559
+ + + + + S + + Q S +LR +++IDP ++ LP ++Q
Sbjct: 569 EKPSTSHAYIHVSNNDANSMKKSNKETSVQEP-SVRLREIFPNLDDIDPDILSLLPTDLQ 627
Query: 560 DEIQAWLR 567
+E + + +
Sbjct: 628 EEARLYTK 635
>gi|351707957|gb|EHB10876.1| DNA polymerase eta [Heterocephalus glaber]
Length = 711
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 160/292 (54%), Gaps = 18/292 (6%)
Query: 34 KATVKEWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 90
K + +WL D+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA
Sbjct: 168 KQGLHQWLDSLQIDNTISPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLAC 227
Query: 91 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 150
G+NKP +QT V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ
Sbjct: 228 GLNKPNRQTLVSQGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGVEYMGELTQFTESQLQ 287
Query: 151 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 210
+G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +E
Sbjct: 288 NHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQE 347
Query: 211 LSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLF 269
L ERL D N R+A L + D R + C L RY K+ +D F +
Sbjct: 348 LEERLTKDQSDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAYKMSQDAFAVI 403
Query: 270 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCS-IMKYFNG 320
+ + G++T+ S +T L + A+K G+C+ I + +G
Sbjct: 404 RN-----CNTSGIQTEWSP----PLTMLFLCATKFSVSGPGSCTDITAFLSG 446
>gi|403261356|ref|XP_003923089.1| PREDICTED: DNA polymerase eta isoform 3 [Saimiri boliviensis
boliviensis]
Length = 648
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 17/284 (5%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 111 QWLDSLQTDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 170
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G
Sbjct: 171 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGE 230
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 231 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERL 290
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLR 274
D N R+A L + D R + C L RY K+ D F++ +
Sbjct: 291 TKDRNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN--- 343
Query: 275 EFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+ G++T+ S +T L + A+K +C+ + F
Sbjct: 344 --YNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSF 381
>gi|403261352|ref|XP_003923087.1| PREDICTED: DNA polymerase eta isoform 1 [Saimiri boliviensis
boliviensis]
Length = 710
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 17/284 (5%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 173 QWLDSLQTDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 232
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G
Sbjct: 233 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGE 292
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 293 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERL 352
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLR 274
D N R+A L + D R + C L RY K+ D F++ +
Sbjct: 353 TKDRNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN--- 405
Query: 275 EFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+ G++T+ S +T L + A+K +C+ + F
Sbjct: 406 --YNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSF 443
>gi|402867082|ref|XP_003897697.1| PREDICTED: DNA polymerase eta isoform 1 [Papio anubis]
Length = 712
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 150/274 (54%), Gaps = 14/274 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP 417
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
+T L + A+K +C+ + F D
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|383419309|gb|AFH32868.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 150/274 (54%), Gaps = 14/274 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNASGIQTEWSP 417
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
+T L + A+K +C+ + F D
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|380813878|gb|AFE78813.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 150/274 (54%), Gaps = 14/274 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP 417
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
+T L + A+K +C+ + F D
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|193783756|dbj|BAG53738.1| unnamed protein product [Homo sapiens]
Length = 617
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 89 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 148
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 149 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 208
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 209 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 268
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 269 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 320
>gi|193785802|dbj|BAG51237.1| unnamed protein product [Homo sapiens]
Length = 701
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 173 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 232
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 233 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 292
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 293 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 352
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 353 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|221045690|dbj|BAH14522.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 111 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 170
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 171 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 230
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 231 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 290
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 291 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|194377454|dbj|BAG57675.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 111 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 170
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 171 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 230
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 231 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 290
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 291 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|55626670|ref|XP_518497.1| PREDICTED: DNA polymerase eta isoform 4 [Pan troglodytes]
gi|410211556|gb|JAA02997.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410262340|gb|JAA19136.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410302290|gb|JAA29745.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330903|gb|JAA34398.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330905|gb|JAA34399.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330907|gb|JAA34400.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330909|gb|JAA34401.1| polymerase (DNA directed), eta [Pan troglodytes]
Length = 713
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 173 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 232
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 233 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 292
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 293 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 352
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 353 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|5729982|ref|NP_006493.1| DNA polymerase eta [Homo sapiens]
gi|59798441|sp|Q9Y253.1|POLH_HUMAN RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
gi|5457144|gb|AAD43810.1|AF158185_1 xeroderma pigmentosum variant RAD30 [Homo sapiens]
gi|5138988|dbj|BAA81666.1| DNA polymerase eta [Homo sapiens]
gi|11463971|dbj|BAB18601.1| DNA polymerase eta [Homo sapiens]
gi|34732732|gb|AAQ81300.1| polymerase (DNA directed), eta [Homo sapiens]
gi|119624615|gb|EAX04210.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
gi|119624616|gb|EAX04211.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
Length = 713
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 173 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 232
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 233 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 292
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 293 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 352
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 353 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|397526775|ref|XP_003833292.1| PREDICTED: DNA polymerase eta [Pan paniscus]
Length = 651
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 111 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 170
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 171 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 230
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 231 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 290
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 291 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|301757340|ref|XP_002914510.1| PREDICTED: DNA polymerase eta-like [Ailuropoda melanoleuca]
gi|281345709|gb|EFB21293.1| hypothetical protein PANDA_002412 [Ailuropoda melanoleuca]
Length = 712
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 149/281 (53%), Gaps = 17/281 (6%)
Query: 7 PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR---DKLLACGVL 58
P S D + ++ G + +G D K + +WL D+ D L G +
Sbjct: 136 PISADLLPTTYIEGLPQGRTTAEGTDQKEETRKQGLFQWLESLRIDNTTSPDLQLTVGAV 195
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
IV E+R + KET F CSAGI+HNK+LAKLA G+NKP QT V SV L +PI ++
Sbjct: 196 IVEEMRAAIEKETGFQCSAGISHNKVLAKLACGLNKPNHQTLVSLGSVPQLFSQMPISRI 255
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R L
Sbjct: 256 RNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYGMCRGIEHDPVRPRQL 315
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
PK+ G K+FPG AL T VQ WL QL EL ERL D N R+A L +
Sbjct: 316 PKTIGCSKNFPGKTALATQEQVQWWLLQLAHELEERLTKDRNDNDRVATQL----AVIIR 371
Query: 239 SDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ----AGLR 274
D R + C L RY K+ D F + + +G+R
Sbjct: 372 VQGDKRLSSVRRCCALTRYDAHKMSHDAFAVIRNCNTSGIR 412
>gi|402867084|ref|XP_003897698.1| PREDICTED: DNA polymerase eta isoform 2 [Papio anubis]
Length = 414
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 5/222 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L RY K+ D F + +
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|395534246|ref|XP_003769157.1| PREDICTED: DNA polymerase eta [Sarcophilus harrisii]
Length = 704
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 152/275 (55%), Gaps = 14/275 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 182 DSGSPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 241
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L LPI K++ LGGKLG S+ + LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 242 SVPQLFSHLPISKIRNLGGKLGASVIDTLGVEYMGELTQFTELQLQNHFGEKNGSWLYAM 301
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPK+ G K+FPG AL T V+ WL QL +EL ERL D N R
Sbjct: 302 CRGIEHDPVKPRQLPKTIGCSKNFPGKIALATQEQVKWWLLQLAQELEERLIKDRNDNDR 361
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A LT+ D R + C L Y ++ D F L + + G+K
Sbjct: 362 VATQLTVSIRV----QGDRRLSSLRRCCALVCYDAHRMSNDAFALIRN-----CNTAGIK 412
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+ S +T L + A+K P + +C+ + F
Sbjct: 413 AEWSP----PLTMLFLCATKFSPSVPPSCTDITSF 443
>gi|16041729|gb|AAH15742.1| POLH protein [Homo sapiens]
gi|119624614|gb|EAX04209.1| polymerase (DNA directed), eta, isoform CRA_a [Homo sapiens]
Length = 414
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 130/222 (58%), Gaps = 5/222 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|403261354|ref|XP_003923088.1| PREDICTED: DNA polymerase eta isoform 2 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 131/222 (59%), Gaps = 5/222 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L RY K+ D F++ +
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIK 404
>gi|426353300|ref|XP_004044135.1| PREDICTED: DNA polymerase eta [Gorilla gorilla gorilla]
Length = 415
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 130/222 (58%), Gaps = 5/222 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|299856826|pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
gi|299856829|pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
gi|299856832|pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
gi|342351155|pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
gi|386783389|pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
gi|386783392|pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
gi|386783395|pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
gi|386783398|pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
gi|386783401|pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
gi|386783404|pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
gi|394986303|pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
gi|394986306|pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
gi|394986309|pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
gi|394986312|pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
gi|394986315|pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
gi|394986318|pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
gi|394986321|pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
gi|394986324|pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
gi|394986327|pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986330|pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
gi|394986333|pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
gi|394986336|pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986339|pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986342|pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986345|pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
gi|394986348|pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
gi|394986351|pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 130/222 (58%), Gaps = 5/222 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 190 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 249
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 250 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 309
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 310 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 369
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L RY K+ D F + +
Sbjct: 370 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 407
>gi|431838335|gb|ELK00267.1| DNA polymerase eta [Pteropus alecto]
Length = 712
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 148/270 (54%), Gaps = 14/270 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSHIPISKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ D R + C L RY K+ D F + + + GV+T+ S
Sbjct: 367 VVSIRV----QGDKRLSTLRRCCALTRYDAHKMSHDAFAVIRN-----CNTSGVQTEWSP 417
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+T L + A+K +C+ + F
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITVF 443
>gi|299856835|pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
gi|374977693|pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
gi|386783428|pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 130/222 (58%), Gaps = 5/222 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 190 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 249
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 250 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 309
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 310 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 369
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L RY K+ D F + +
Sbjct: 370 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 407
>gi|344263722|ref|XP_003403945.1| PREDICTED: DNA polymerase eta [Loxodonta africana]
Length = 718
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 154/284 (54%), Gaps = 17/284 (5%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP
Sbjct: 176 QWLDSLQIDNTASPDLQLTMGAVIVEEVRAAIERQTGFQCSAGISHNKVLAKLACGLNKP 235
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
QT V SV L +PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 236 NSQTLVSHGSVPQLFSQMPITKVRNLGGKLGASVVGILGIEYMGELTQFTESQLQSHFGE 295
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G GK+FPG AL T VQ WL QL +EL ERL
Sbjct: 296 KNGSWLYAVCRGIEHDPVKPRQLPKTIGCGKNFPGKTALVTREQVQWWLLQLAQELEERL 355
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLR 274
D N R+A LT+ D R + C L Y K+ D F A LR
Sbjct: 356 TKDRNDNDRMATQLTVTIRV----QGDKRLSSLRRCCALTHYDAHKMSHDAF----AVLR 407
Query: 275 EFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+ G++T+ S +T L +SA+K +C + F
Sbjct: 408 N-CNTSGIQTEWSP----PLTMLFLSATKFYASGPSSCPDITVF 446
>gi|126310086|ref|XP_001366117.1| PREDICTED: DNA polymerase eta [Monodelphis domestica]
Length = 704
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 151/277 (54%), Gaps = 18/277 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D L G +IV E+R+ + K T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 182 DPSSSDLRLTVGAVIVEEMRVAIEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 241
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L LPI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 242 SVPQLFSHLPIGKIRNLGGKLGASVIGTLGVEYMGELTQFTELQLQSHFGEKNGSWLYAM 301
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPK+ G K+FPG AL T V+ WL QL +EL ERL D + N R
Sbjct: 302 CRGIEHDPVKPRQLPKTIGCSKNFPGITALTTQEQVKWWLLQLAQELEERLTKDQKDNDR 361
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA-KIQEDTFNLFQAGLREFLGSFGVK 283
+A L + D R + C L Y A K+ D F L + + G+K
Sbjct: 362 VALQLAVSIRI----QGDKRLSSLRRCCALAYYDAHKMSSDAFALIRN-----CNTAGIK 412
Query: 284 TQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYF 318
T+ W +T L + A+K P +C+ + F
Sbjct: 413 TE------WAPPLTMLFLCATKFSPSDPTSCTDITSF 443
>gi|156387566|ref|XP_001634274.1| predicted protein [Nematostella vectensis]
gi|156221355|gb|EDO42211.1| predicted protein [Nematostella vectensis]
Length = 345
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 134/210 (63%), Gaps = 3/210 (1%)
Query: 9 SLDEVDEEALKS-HILGLESK--DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 65
++ E+ EE ++ I GL SK D S KEWL + +A + LA G +I E+R
Sbjct: 133 TVPEIAEEVWRTTAIEGLSSKGSDTTISDELQKEWLSQLEASPYLRNLAAGAVIAAEMRH 192
Query: 66 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 125
VL++T FTCSAG+A NK+LAKL G+NKP +QT +P S+V L ++P++K++ LGGKL
Sbjct: 193 AVLEKTGFTCSAGVATNKVLAKLCCGLNKPDKQTLLPHSAVTNLFKTMPLRKVRHLGGKL 252
Query: 126 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 185
G+ L +EL V +GDLL+F + L+ +G G L+N+ RGI E V+AR LPKS G
Sbjct: 253 GSQLHSELNVEFMGDLLQFKINDLKAQFGSKNGELLYNLCRGIDNEPVRARQLPKSVSCG 312
Query: 186 KSFPGPRALKTVASVQHWLNQLCEELSERL 215
K+FPG L T V+ W+ QL EEL ERL
Sbjct: 313 KNFPGKTKLSTCQQVKFWMEQLVEELHERL 342
>gi|340710696|ref|XP_003393922.1| PREDICTED: DNA polymerase eta-like [Bombus terrestris]
Length = 820
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 186/357 (52%), Gaps = 40/357 (11%)
Query: 9 SLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRCDADHRD---KLLACGVLIVT 61
SL+ + + + ++G ND SK T K W+ + D + LA LIV
Sbjct: 137 SLNHLVTQLSNTFVVGYSEVGKNDEEERSKGT-KTWIMNVFENLEDIEAQKLAIAGLIVE 195
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
E+R + +T F CSAGIA NK+LAKLA G++KP +QT +P ++V L +LPIKK++ L
Sbjct: 196 EIRADIFDKTGFRCSAGIAENKILAKLACGLHKPNRQTILPATAVSTLYSTLPIKKVRNL 255
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
GGK GT + L +GDL+++S LQ+ + TG WL+NIARGI E V RL+ KS
Sbjct: 256 GGKFGTVVVESLNCNVMGDLVQYSLQYLQKRFDEKTGLWLYNIARGIDNEPVNIRLVSKS 315
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 241
G+ K FPG +A+ ++ ++HW +L E+ ERL DLE+N+R A +T+ +++ +
Sbjct: 316 IGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENERRATLMTICYQYYQNKAT 375
Query: 242 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG--SHYSGWRITALSV 299
S+ S+SC T N ++ G+ ++ S + I L +
Sbjct: 376 VSQ----SRSC------------TLNSYKP------GNMAIRCVQIISKSTQCPIAYLGI 413
Query: 300 SASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTE 356
SA K +P G+ + +F ++E P IDA + YS N+T+
Sbjct: 414 SAGKFIPA-KGSGNFRNFF-------KSNESEPHKKIDAQTKNTKVESIYSVENTTK 462
>gi|296198265|ref|XP_002746624.1| PREDICTED: DNA polymerase eta [Callithrix jacchus]
Length = 709
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 149/270 (55%), Gaps = 14/270 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT + SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLLSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIHKIRSLGGKLGASVTEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ D R + C L RY K+ D F++ + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQTEWSP 417
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+T L + A+K +C+ + F
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSF 443
>gi|91094387|ref|XP_971192.1| PREDICTED: similar to DNA polymerase eta [Tribolium castaneum]
gi|270014910|gb|EFA11358.1| hypothetical protein TcasGA2_TC011515 [Tribolium castaneum]
Length = 679
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 136/241 (56%), Gaps = 5/241 (2%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA G L+ E+R +V K T + CSAGIAHNK+LAKL ++KP +QT +P V+ ++
Sbjct: 171 LAVGGLVTEEIRREVFKVTGYKCSAGIAHNKILAKLVCSLHKPNKQTILPQEEVEKFFET 230
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
PI K+K LGGK G +L + VTT+G L K E L + Y TG WL NIARGI E
Sbjct: 231 TPINKVKNLGGKFGQTLSEDFHVTTMGQLAKIPEKLLVQKYDEKTGNWLHNIARGIDMEP 290
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL- 231
V +L+ KS K+FPG AL T +VQHWL +L E+SERL DL++N R A + +
Sbjct: 291 VTTKLIAKSIACCKNFPGKTALVTEENVQHWLGKLAAEMSERLDKDLKENNRRAKQIIVS 350
Query: 232 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
A D S + P S Y KI + F + + R+ G++ +K G + S
Sbjct: 351 FAQEVNKKDVHSTRTHPLVS----YNEQKIAQAAFEVVKRFCRKSDGTYHLKFLGLNASS 406
Query: 292 W 292
+
Sbjct: 407 F 407
>gi|350412770|ref|XP_003489756.1| PREDICTED: DNA polymerase eta-like [Bombus impatiens]
Length = 818
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 32/306 (10%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA LIV E+R + +T F CSAGIA NK+LAKLA G++KP +QT +P ++V L +
Sbjct: 187 LAIAGLIVEEIRADIFDKTGFRCSAGIAGNKILAKLACGLHKPNRQTILPAAAVSTLYST 246
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPIKK++ LGGK G + L +GDLL++S LQ+ + TG+WL+NIARGI E
Sbjct: 247 LPIKKVRNLGGKFGDVVVESLNCNVMGDLLQYSLQYLQKRFDEKTGSWLYNIARGIDNEP 306
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V RL+ KS G+ K FPG +A+ ++ ++HW +L E+ ERL DLE+N+R A +T+
Sbjct: 307 VNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENERRATLMTIC 366
Query: 233 ASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG--SHYS 290
+++ + S+ S+SC T N ++ G+ ++ S +
Sbjct: 367 YQYYQNKATVSQ----SRSC------------TLNSYKP------GNMAIRCVQIISKST 404
Query: 291 GWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYS 350
I L +SA K +P G+ + +F ++E P IDA + YS
Sbjct: 405 QCPIAYLGISAGKFIPA-KGSGNFRNFF-------KSNESEPHKKIDAQTENTKVESIYS 456
Query: 351 TLNSTE 356
N+T+
Sbjct: 457 VENTTK 462
>gi|195592306|ref|XP_002085876.1| GD12080 [Drosophila simulans]
gi|194197885|gb|EDX11461.1| GD12080 [Drosophila simulans]
Length = 889
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 134/230 (58%), Gaps = 7/230 (3%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L
Sbjct: 202 DIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAETASL 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + + LG+ +G ++KFSE +LQ + GTWL+NI+RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCDTLGIKFMGQVVKFSEVELQRKFDEKNGTWLFNISRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHT 228
E V R KS G K FPG + + ++QHWL +L E+++RL D +E N+R H
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHM 381
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 277
+ + D D + S+S L+ Y I + +L +A + FL
Sbjct: 382 VVQYV-----QDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANTKTFL 426
>gi|10440504|dbj|BAB15799.1| dpol-eta [Drosophila melanogaster]
gi|12083719|dbj|BAB20905.1| DNA polymerase eta [Drosophila melanogaster]
gi|16198323|gb|AAL14000.1| SD05329p [Drosophila melanogaster]
Length = 885
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 145/273 (53%), Gaps = 16/273 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L
Sbjct: 202 DIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLTETASL 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ + GTWL+NI+RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHT 228
E V R KS G K FPG + + ++QHWL +L E+++RL D +E N+R H
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHM 381
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GSFGVKTQ 285
+ + D D + S+S LR Y I + +L +A + FL GS
Sbjct: 382 VVQYV-----QDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGSESALNN 436
Query: 286 GSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
I L +S K V SG + + F
Sbjct: 437 A-------IKFLGISVGKFETVSSGQNKLQEMF 462
>gi|24668444|ref|NP_649371.2| DNApol-eta [Drosophila melanogaster]
gi|7296509|gb|AAF51794.1| DNApol-eta [Drosophila melanogaster]
Length = 885
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 145/273 (53%), Gaps = 16/273 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L
Sbjct: 202 DIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLTETASL 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ + GTWL+NI+RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHT 228
E V R KS G K FPG + + ++QHWL +L E+++RL D +E N+R H
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHM 381
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GSFGVKTQ 285
+ + D D + S+S LR Y I + +L +A + FL GS
Sbjct: 382 VVQYV-----QDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGSESALNN 436
Query: 286 GSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
I L +S K V SG + + F
Sbjct: 437 A-------IKFLGISVGKFETVSSGQNKLQEMF 462
>gi|197245419|ref|NP_001127801.1| DNA-directed DNA polymerase eta [Nasonia vitripennis]
Length = 753
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 166/312 (53%), Gaps = 25/312 (8%)
Query: 11 DEVDEEALKSHILGLESKDGNDSKATVK---EWLCRCDADHRDKLLACGVLIVTELRMQV 67
D + ++ S+I+G D N+ + K +WL D + + LA V +R +V
Sbjct: 138 DSISKQLENSYIVGFSESDINNEEQRSKGLQDWLSELADDIQIQRLAIAGAFVEHIRKEV 197
Query: 68 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 127
T F CSAGI+ NK+LAKLA G++KP +QT +P S+V L SLP+KK++ LGGKLG
Sbjct: 198 YDTTGFRCSAGISFNKILAKLACGLHKPNRQTILPASAVPELYGSLPVKKVRNLGGKLGD 257
Query: 128 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 187
+ + L + DLL +S LQ + TG WL+NIARGI E V RL+ KS G+ K
Sbjct: 258 MVIDSLKCNVMADLLPYSLQYLQNRFDEKTGMWLYNIARGIDSEPVTPRLVSKSIGACKR 317
Query: 188 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 247
FPG +A+ + ++HW+ +L E+ ERL DLE+N+R A L + +F+ D +
Sbjct: 318 FPGKQAIVELDVLKHWIGELSAEVCERLEQDLEENERKASQLIV---SFQYC-QDKKLVS 373
Query: 248 PSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 306
S++ L Y K+ E + N+ ++ L SF L +SA K +
Sbjct: 374 QSRTVALTSYKQEKVAEQSLNIVVKATQQLLISF----------------LGLSAGKFIK 417
Query: 307 VLSGTCSIMKYF 318
G+ + M +F
Sbjct: 418 A-KGSENFMNFF 428
>gi|260803774|ref|XP_002596764.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
gi|229282024|gb|EEN52776.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
Length = 354
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 111/174 (63%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
DA D+ LA G I E+R V +ET F CSAGI HNK+LAKL G++KP QQT +P +
Sbjct: 180 DASMYDRRLAVGAAIAEEMRAAVERETGFHCSAGIGHNKVLAKLCCGLHKPKQQTVLPHA 239
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +LPIKK++ GGKLG SL ELGV +G L FSE +LQ G GTWL+N+
Sbjct: 240 SVPQLYSTLPIKKVRGCGGKLGASLTEELGVEYMGQLAAFSEKELQAKCGDKCGTWLYNL 299
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
RGI E V+ R + +S G GK+FPG L T V HWL QL EL+ERL D
Sbjct: 300 CRGIDYEAVKDRQVAQSIGCGKNFPGRECLDTKEKVLHWLTQLTSELAERLQKD 353
>gi|195348695|ref|XP_002040883.1| GM22104 [Drosophila sechellia]
gi|194122393|gb|EDW44436.1| GM22104 [Drosophila sechellia]
Length = 889
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 133/230 (57%), Gaps = 7/230 (3%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L
Sbjct: 202 DIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAETASL 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + LG+ +G ++KFSE +LQ + GTWL+NI+RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVELQRKFDEKNGTWLFNISRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHT 228
E V R KS G K FPG + + ++QHWL +L E+++RL D +E N+R H
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHM 381
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 277
+ + D D + S+S L+ Y I + +L +A + FL
Sbjct: 382 VVQYV-----QDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANTKTFL 426
>gi|302822400|ref|XP_002992858.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
gi|300139306|gb|EFJ06049.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
Length = 808
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 125/209 (59%), Gaps = 27/209 (12%)
Query: 120 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 179
+LGGKLG L+ ELGV TVG LL+FSE KLQ+ YG NTGTWLWN +RGI+G+EVQ R LP
Sbjct: 8 KLGGKLGQELEGELGVKTVGGLLQFSEVKLQDMYGPNTGTWLWNTSRGINGDEVQDRTLP 67
Query: 180 KSHGSGKSFPGPRALKTVAS--------VQHWLNQLCEELSERLCSDLEQNKRIA-HTLT 230
KSH SGK+FPGP+ALKT+ + V +WL +L E L RL DL QN R A H LT
Sbjct: 68 KSHSSGKTFPGPQALKTLETLRATFLLQVVYWLKELAETLQLRLDEDLSQNNRTAQHLLT 127
Query: 231 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 290
+HAS S + KF SKS PLRYG KI AG K Q S
Sbjct: 128 IHASCHIESRATEAPKFSSKSRPLRYGVDKI--------SAG----------KEQSEITS 169
Query: 291 GWRITALSVSASKIVPVLSGTCSIMKYFN 319
W +T LS++AS I+ G I +Y +
Sbjct: 170 SWAVTGLSLTASNIMAKPMGVNPITQYVD 198
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 539 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 589
W+ + EEIDPSV ELP EIQ E+Q R + R F+ D+ K
Sbjct: 267 WEYKQEEIDPSVFAELPSEIQQELQVTHRRNLHKERTVASFSDQDHLKHEK 317
>gi|410959244|ref|XP_003986222.1| PREDICTED: DNA polymerase eta [Felis catus]
Length = 712
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIYKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R +PK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVRPRKIPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L Y K+ D F + +
Sbjct: 367 AVSIRV----QGDRRLSSLRRCCALTHYDAHKMSRDAFAVIR 404
>gi|194752317|ref|XP_001958469.1| GF23499 [Drosophila ananassae]
gi|190625751|gb|EDV41275.1| GF23499 [Drosophila ananassae]
Length = 876
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 128/229 (55%), Gaps = 5/229 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + E+R V KET + CSAGIAHNK+LAKLA+G+NKP +QT +P +
Sbjct: 202 DIRLLIGAAVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGLNKPNKQTILPLGEIPAF 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + +G+ +G L KFSE +LQ Y GTWL+NIARGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETMGIKFLGQLCKFSEAELQRKYDEKNGTWLFNIARGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G K FPG + + S+QHWL +L E++ERL D +N R A +
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSSEINERLEKDFIENNRKAKQM 381
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 277
+ D D + S+S L+ Y + + L ++ + FL
Sbjct: 382 VVQY----IQDIDGHEVASSRSTALKDYDKESLAKFALELIRSNTKTFL 426
>gi|77735847|ref|NP_001029622.1| DNA polymerase eta [Bos taurus]
gi|73587313|gb|AAI03397.1| Polymerase (DNA directed), eta [Bos taurus]
gi|296474420|tpg|DAA16535.1| TPA: DNA-directed DNA polymerase eta [Bos taurus]
Length = 711
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 128/218 (58%), Gaps = 5/218 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R+ + K+T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTMGAVIVEEMRVAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+ +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI
Sbjct: 247 FNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R + K+ G GK+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRPITKTLGCGKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 266
+ D R + C L Y K+ D F
Sbjct: 367 VVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 400
>gi|145352281|ref|XP_001420480.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580714|gb|ABO98773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 534
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 170/329 (51%), Gaps = 24/329 (7%)
Query: 2 LAETPPESLDE-----VDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD--KLLA 54
L E+ + L+E + E+A SH G + G + W R +++ R+ KLLA
Sbjct: 156 LTESAKKVLEETAWATILEKARTSHAAGASAVSGKGYASVA--WWNRDESEWREEEKLLA 213
Query: 55 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 114
G I LR + E +T SAGIA NKMLAKL SGMNKPA QT + LLD LP
Sbjct: 214 AGAYICFNLRKACVDELGYTLSAGIALNKMLAKLTSGMNKPASQTVLCPDHTSTLLDELP 273
Query: 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
I +++ LG K G L + L V T+G+L + KL+E G W+ ++ G+ + V+
Sbjct: 274 IDRIRGLGAKFGRELADGLNVKTIGELARTPLRKLEEVCGEEKAQWVRKVSLGLDDDPVK 333
Query: 175 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 234
AR +PKS G+GK+F G A++++AS +HWL +L EL++R +D E+ R+ LTL S
Sbjct: 334 AREMPKSIGTGKTFRGALAIRSIASAKHWLAELTAELNDRCEADEEEWNRVPKLLTLGLS 393
Query: 235 AFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 294
+ ++ S S+ CPLR G ++ +D L S W I
Sbjct: 394 SPDERETSS--GHCSRRCPLRPGADEMAQDALTLLS-------------KWASGRERWSI 438
Query: 295 TALSVSASKIVPVLSGTCSIMKYFNGPDK 323
T +SVSAS V + + +++ F K
Sbjct: 439 TGMSVSASNFVSLEKDSGDVVEMFKNATK 467
>gi|194876038|ref|XP_001973703.1| GG13193 [Drosophila erecta]
gi|190655486|gb|EDV52729.1| GG13193 [Drosophila erecta]
Length = 890
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 130/229 (56%), Gaps = 5/229 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L
Sbjct: 202 DIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLADTASL 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + LG+ +G ++KF+E +LQ + GTWL+NI+RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETLGIKYIGQVVKFTEVELQRKFDEKNGTWLFNISRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G K FPG + + ++QHWL +L E+++RL D +N R A +
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKQM 381
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 277
+ D D + S+S L+ Y I +L +A + FL
Sbjct: 382 VVQY----VQDIDGEEVASSRSTALKDYDQESIVRFALDLIRANTKTFL 426
>gi|383850772|ref|XP_003700950.1| PREDICTED: DNA polymerase eta-like [Megachile rotundata]
Length = 774
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 138/233 (59%), Gaps = 8/233 (3%)
Query: 20 SHILGLESKDGNDS---KATVKEWLCRCDADHRD---KLLACGVLIVTELRMQVLKETEF 73
+ I+G ND + V WL + D + LA +IV ELR + ET F
Sbjct: 148 TFIVGYSEIGKNDEEQRRKGVNAWLTNIFEELEDVQAQELALAGVIVEELRQDIYNETGF 207
Query: 74 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 133
CSAGI++NK+LAKLA G++KP +QT +P ++V L +LPIKK++ LGGK G + L
Sbjct: 208 KCSAGISNNKILAKLACGLHKPNRQTILPPNAVSELYSTLPIKKVRNLGGKFGDVVIESL 267
Query: 134 GVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRA 193
+GDLL++S LQ+ + TG WL+NIARGI E V RL+ KS G+ K FPG +A
Sbjct: 268 NCNVMGDLLQYSLQYLQKRFDDKTGLWLYNIARGIDNEPVTTRLISKSIGACKKFPGKQA 327
Query: 194 LKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 244
+ +V ++HW + E+ ERL DL++N+R A LT+ H KS+ + SR
Sbjct: 328 ITSVDVLRHWAGDMAAEVCERLEQDLQENERRATLLTVCYHYYQNKSTVTQSR 380
>gi|195379088|ref|XP_002048313.1| GJ11416 [Drosophila virilis]
gi|194155471|gb|EDW70655.1| GJ11416 [Drosophila virilis]
Length = 871
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 128/229 (55%), Gaps = 5/229 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G I E+R V ET + CSAGIAHNK+LAKLA+GMNKP +QT +P + + L
Sbjct: 203 DLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAEIPAL 262
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
D LP+ K+K LGGK G ++ LGV +G +LK+SE +LQ G+WL NIARGI
Sbjct: 263 FDQLPVGKIKGLGGKFGETVCETLGVKFLGQVLKYSEKELQRKLDEKNGSWLHNIARGID 322
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G K FPG + + ++QHWL +L E+++RL D +N R A +
Sbjct: 323 LEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEMNDRLEKDFIENNRKAKQM 382
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 277
+ D D ++ S+S P+ Y + + L + + FL
Sbjct: 383 VVQY----VQDVDGQEVASSRSTPINHYDQETLAKQALELIRTNTKTFL 427
>gi|322796130|gb|EFZ18706.1| hypothetical protein SINV_03879 [Solenopsis invicta]
Length = 818
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 2/200 (1%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D + + LA ++V E+R + +ET F CSAGIA NK+LAKLA G++KP +QT +P +V
Sbjct: 180 DIQTQRLAVAGIMVEEMRESIYRETGFRCSAGIAQNKILAKLACGLHKPNRQTILPEVAV 239
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
L +LPIKK++ LGGK G ++ LG +GDL+++S ++LQ+ + TG WL+NIAR
Sbjct: 240 SSLYSTLPIKKVRNLGGKFGDNVIESLGCNVMGDLMQYSLEQLQKHFDEKTGFWLYNIAR 299
Query: 167 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 226
GI E V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL D +N+R A
Sbjct: 300 GIDDEPVTNRLLAKSIGACKQFPGKQAITSLEMLKHWAGDLAAEVCERLEEDFVENQRRA 359
Query: 227 HTLTL--HASAFKSSDSDSR 244
L + H KS+ S +R
Sbjct: 360 TLLVISYHYYQNKSTISQTR 379
>gi|307200513|gb|EFN80675.1| DNA polymerase eta [Harpegnathos saltator]
Length = 827
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 125/194 (64%), Gaps = 2/194 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA +IV E+R + ET F CSAGI+ NK+LAKLA G++KP +QT +P ++V L +
Sbjct: 183 LAVAGMIVEEIRASIYNETGFRCSAGISQNKILAKLACGLHKPNRQTILPEAAVASLYST 242
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
L +KK++ LGGK G + LG +GDL+++S ++LQ+ + TG WL+NIARGI E
Sbjct: 243 LSVKKVRNLGGKFGDVVVESLGCNVMGDLMQYSLEQLQKHFDEKTGLWLYNIARGIDNEP 302
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL- 231
V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL DL +N+R A LT+
Sbjct: 303 VTNRLLSKSVGACKKFPGKQAITSLEVLKHWAGDLAAEVCERLEQDLIENQRRATLLTIS 362
Query: 232 -HASAFKSSDSDSR 244
H +S+ S SR
Sbjct: 363 YHYYQNRSTVSQSR 376
>gi|335292187|ref|XP_003356678.1| PREDICTED: DNA polymerase eta [Sus scrofa]
Length = 698
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 166/314 (52%), Gaps = 22/314 (7%)
Query: 7 PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR---DKLLACGVL 58
P S D + ++ GL + +G K ++ +WL +D+ + L G +
Sbjct: 136 PVSADLLPTTYIEGFPQGLTTAEGTVEKEEMRKQGLLQWLDSLQSDNTSSPELQLTVGAV 195
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
IV E+R + ++T CSAGI+HNK+LAKLA ++KP +QT V SV + +PI K+
Sbjct: 196 IVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLVSLGSVPQVFSQMPISKV 255
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI E V+ R +
Sbjct: 256 RHLGGKLGASIIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHEPVRPRQV 315
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
K+ G GK+FPG AL T VQ WL QL +EL ERL D N R+A L +
Sbjct: 316 TKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRVL-- 373
Query: 239 SDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 297
D R + C L Y K+ +D F A +R + S G++T+ S +T L
Sbjct: 374 --GDKRLSSLRRCCALTHYDAHKMSQDAF----AAIRNYNTS-GIQTEWSP----PLTML 422
Query: 298 SVSASKIVPVLSGT 311
+ A+K +GT
Sbjct: 423 FLCATKFSASSAGT 436
>gi|195440450|ref|XP_002068055.1| GK12166 [Drosophila willistoni]
gi|194164140|gb|EDW79041.1| GK12166 [Drosophila willistoni]
Length = 864
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 130/229 (56%), Gaps = 4/229 (1%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G I E+R V KET + CSAG+AHNK+LAKLA+G+NKP +QT +P + GL
Sbjct: 203 DIRLLIGACIAGEVRAAVKKETGYECSAGVAHNKILAKLAAGLNKPNKQTILPLDEIPGL 262
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
++LP+ K+K LGGK G + L + +G+LLKFSE +LQ + GTWL NI RGI
Sbjct: 263 FETLPVGKIKGLGGKFGEIVCETLSIKFLGELLKFSEGELQRKFDEKNGTWLANICRGID 322
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHT 228
E V R KS G K FPG + + ++QHWL++L E++ERL D +E N+R
Sbjct: 323 LECVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLSELATEITERLEKDAIENNRRAKQM 382
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFL 277
+ + + S + S + P Y + + +L +A + FL
Sbjct: 383 VVQYVQDLDGEEVASSR---SNALPNHYDKETLANISLDLIKANTKTFL 428
>gi|195496653|ref|XP_002095784.1| GE19515 [Drosophila yakuba]
gi|194181885|gb|EDW95496.1| GE19515 [Drosophila yakuba]
Length = 895
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 130/229 (56%), Gaps = 5/229 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P +
Sbjct: 202 DIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAETASF 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + LG+ +G ++KF+E +LQ + GTWL+NI+RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFTEVELQRKFDEKNGTWLFNISRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G + FPG + + ++QHWL +L E+++RL D +N R A +
Sbjct: 322 MEAVTPRFYSKSIGCCQKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKQM 381
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 277
+ D D + S+S L+ Y I + +L +A + FL
Sbjct: 382 VVQY----VQDIDGEEVASSRSTALKDYDQESIVRFSLDLIKANTKTFL 426
>gi|195128223|ref|XP_002008564.1| GI11744 [Drosophila mojavensis]
gi|193920173|gb|EDW19040.1| GI11744 [Drosophila mojavensis]
Length = 894
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 130/229 (56%), Gaps = 5/229 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G I E+R V ET + CSAGIAHNK+LAKLA+GMNKP +QT +P + + L
Sbjct: 203 DLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAQIPPL 262
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
D LP+ K+K +GGK G ++ LGV +G +LK+SE LQ +GTWL NIARGI
Sbjct: 263 FDQLPVGKIKGMGGKFGETVCETLGVKFLGQVLKYSEKDLQRKLDEKSGTWLHNIARGID 322
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G K FPG + + ++QHWL +L E+++RL D +N R A +
Sbjct: 323 LEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEINDRLEKDFIENNRKAKQM 382
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 277
+ D D ++ S+S PL + + + + L +A + FL
Sbjct: 383 VVQY----VQDIDGQEVASSRSMPLNQCDQETLVKQSLELIKANTKTFL 427
>gi|440902446|gb|ELR53238.1| DNA polymerase eta [Bos grunniens mutus]
Length = 710
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+ +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI
Sbjct: 247 FNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R + K+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRPITKTLGCSKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 266
+ D R + C L Y K+ D F
Sbjct: 367 VVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 400
>gi|357624213|gb|EHJ75075.1| DNA polymerase eta [Danaus plexippus]
Length = 785
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 122/204 (59%), Gaps = 5/204 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D +H LL G LIV+E+R V ET + CSAGIAHNK+LAKL GMNKP +QT +P
Sbjct: 171 DYEHSKHLLV-GALIVSEIRAAVYAETGYQCSAGIAHNKILAKLVCGMNKPNKQTVLPKH 229
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +L +KK+K LGGK G + L ++T+G L +F+E LQ + G+WL+NI
Sbjct: 230 SVNILYKTLSLKKVKHLGGKFGDHVAETLNISTMGQLQRFTEKDLQARFDEKNGSWLYNI 289
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
ARG+ E VQAR PKS G K G AL+ + S++ WL L +E+ RL D +N R
Sbjct: 290 ARGVDLEPVQARFNPKSIGCCKQLRGKAALQDLVSLRKWLRDLGDEIENRLEQDSLENNR 349
Query: 225 IAH----TLTLHASAFKSSDSDSR 244
I + +L AS K S SR
Sbjct: 350 IPKQMVVSFSLQASKGKRDISSSR 373
>gi|426250341|ref|XP_004018895.1| PREDICTED: DNA polymerase eta [Ovis aries]
Length = 708
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 186 DLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 245
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+ +PI +++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI
Sbjct: 246 FNQVPINRVRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWLYAMCRGIE 305
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R + K+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 306 HDPVKPRPITKTIGCSKNFPGKTALSTRFQVQWWLLQLAQELEERLTKDRNANDRVATQL 365
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 266
+ D R + C L Y K+ D F
Sbjct: 366 VVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 399
>gi|347965825|ref|XP_321730.5| AGAP001404-PA [Anopheles gambiae str. PEST]
gi|333470336|gb|EAA01093.5| AGAP001404-PA [Anopheles gambiae str. PEST]
Length = 929
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 149/275 (54%), Gaps = 10/275 (3%)
Query: 43 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 102
R + D L G IV E+R V + T F CSAGIAHNK+LAKL +G +KP +QT +P
Sbjct: 189 RLEYKKSDIKLLVGASIVNEIRAAVKERTGFECSAGIAHNKILAKLTAGFHKPNKQTILP 248
Query: 103 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 162
+S+ L ++LP+KK+K LGGKLG + L + + +L++F E LQ+ + G+W++
Sbjct: 249 INSIPKLYETLPLKKVKGLGGKLGDQVCEVLKIKFMSELVQFPESVLQQHFEQRMGSWMY 308
Query: 163 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
+ARGI E V A+ KS G K FPG A+ +A++ HWLN+L E++ERL DL++N
Sbjct: 309 LMARGIDLEAVTAKFHSKSIGCCKRFPGKNAITGLATLHHWLNELASEVTERLEKDLDEN 368
Query: 223 KRIAHTLTL-HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG 281
R A LT+ ++ + D S + + Y +I D + + F S
Sbjct: 369 NRTAKQLTVSYSQQIDNVDVSSTRSI----ALVAYDAERIAADALDAIKRNTERFFASNS 424
Query: 282 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMK 316
T H I L +SA K P +G + +K
Sbjct: 425 --TTALHNP---IKFLGISAGKFEPNGAGKGAGIK 454
>gi|291396262|ref|XP_002714741.1| PREDICTED: DNA-directed DNA polymerase eta [Oryctolagus cuniculus]
Length = 687
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 127/218 (58%), Gaps = 5/218 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + ++T CSAGI+HNK+LAKLA G+NKP +QT V V L
Sbjct: 187 DVRLTMGAVIVEEMRAAIERKTGLQCSAGISHNKVLAKLACGLNKPNRQTLVSHKFVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG+S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQVPIRKVRNLGGKLGSSVIAILGIEYMGELTQFTESQLQWHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R +PKS G K+FPG AL T VQ WL QL EL ERL D N R+A L
Sbjct: 307 HDPVRPRQIPKSVGCSKNFPGQTALATPEQVQWWLLQLARELEERLTKDQTDNDRMATQL 366
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 266
+ D R + C + RY K+ +D F
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCAITRYDAHKMSQDAF 400
>gi|194223548|ref|XP_001497587.2| PREDICTED: DNA polymerase eta [Equus caballus]
Length = 713
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 165/321 (51%), Gaps = 22/321 (6%)
Query: 7 PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR---DKLLACGVL 58
P S D + ++ G + +G D K ++ +WL D+ D L G +
Sbjct: 136 PISADLLPSTYIEGLPQGSTTAEGTDEKEEMRKQGLFQWLDSLQTDNTTSPDLQLTVGAV 195
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
IV E+R + ++T CSAGI+HNK+LAKLA G+NKP QT + SV L +PI K+
Sbjct: 196 IVEEMRAAIERQTGLQCSAGISHNKVLAKLACGLNKPNHQTLISHGSVPQLFSQMPISKI 255
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R +
Sbjct: 256 RNLGGKLGASVIGILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQI 315
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G K+FP AL T VQ WL QL +EL ERL D +N R+A L +
Sbjct: 316 LKSIGCCKNFPAKVALTTQEQVQWWLLQLAQELEERLIKDRNENDRVATQLAVSLRV--- 372
Query: 239 SDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 297
D R + C L Y K+ D F A +R + S G++ + S +T L
Sbjct: 373 -QGDRRLSSLRRCCALTCYDAHKMSHDAF----AVIRNYNVS-GIQNEWSP----PLTML 422
Query: 298 SVSASKIVPVLSGTCSIMKYF 318
+SA+K +C+ + F
Sbjct: 423 FLSATKFSASTPSSCTDITNF 443
>gi|380014904|ref|XP_003691455.1| PREDICTED: DNA polymerase eta-like [Apis florea]
Length = 700
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 131/213 (61%), Gaps = 5/213 (2%)
Query: 37 VKEWLCRCDADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 93
+K W+ + D + LA LIV ++R + + F CSAGIA NK+LAKLA G++
Sbjct: 167 IKTWIKNVFEEFEDIEAQKLAIAGLIVEKIRTDISDKIGFKCSAGIAQNKILAKLACGLH 226
Query: 94 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 153
KP +QT +P ++V L +LPIKK++ LGGK G + L +GDLL++S LQ+ +
Sbjct: 227 KPNRQTILPAAAVLTLYSTLPIKKVRNLGGKFGDIVTESLNCNVMGDLLQYSLQYLQKRF 286
Query: 154 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
TG WL+NIARGI E V RL+ KS G+ K FPG +A+ ++ ++HW+++L E+ E
Sbjct: 287 DEKTGLWLYNIARGIDNEPVTVRLVSKSIGACKKFPGKQAITSLNMLKHWISELSAEICE 346
Query: 214 RLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 244
RL DL +N+R A +T+ H K+ S SR
Sbjct: 347 RLEQDLTENERRATLVTICYHYYQNKTIVSQSR 379
>gi|328786259|ref|XP_001122310.2| PREDICTED: DNA polymerase eta [Apis mellifera]
Length = 689
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 123/194 (63%), Gaps = 2/194 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
A LIV ++R + + F CSAGIA NK+LAKLA G++KP +QT +P ++V L +
Sbjct: 186 FAIAGLIVEKIRADIFDKIGFKCSAGIAQNKILAKLACGLHKPNRQTILPAAAVLTLYST 245
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPIKK++ LGGK G + L +GDLL++ LQ+ + TG WL+NIARGI E
Sbjct: 246 LPIKKVRNLGGKFGHIVTESLNCNVMGDLLQYPLQYLQKRFDEKTGLWLYNIARGIDNEP 305
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL- 231
V RL+ KS G+ K FPG +A+ ++ ++HW+++L E+ ERL DL +N+R A +T+
Sbjct: 306 VNVRLVSKSIGACKKFPGKQAIISLNMLKHWISELSAEICERLERDLMENERRATLVTIC 365
Query: 232 -HASAFKSSDSDSR 244
H K++ S SR
Sbjct: 366 YHYYQNKTTVSQSR 379
>gi|198465285|ref|XP_001353578.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
gi|198150090|gb|EAL31091.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
Length = 894
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 114/183 (62%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G I E+R V K+T + CSAGIAHNK+LAKLA+G+NKP +QT +P + + GL
Sbjct: 202 DIRLLIGASIAGEVRAAVKKDTGYDCSAGIAHNKILAKLAAGLNKPNKQTILPLAEIPGL 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + LG+ +G L+K++E +LQ + GTWL+ ++RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEGELQRKFDEKNGTWLFYMSRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G K FPG + + S+QHWL +L E+++RL D +N R A +
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSIEINDRLEKDFIENNRKAKQM 381
Query: 230 TLH 232
+
Sbjct: 382 VVQ 384
>gi|195161139|ref|XP_002021427.1| GL25322 [Drosophila persimilis]
gi|194118540|gb|EDW40583.1| GL25322 [Drosophila persimilis]
Length = 892
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 114/183 (62%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G I E+R V K+T + CSAGIAHNK+LAKLA+G+NKP +QT +P + + GL
Sbjct: 202 DIRLLIGASIAGEVRAAVKKDTGYDCSAGIAHNKILAKLAAGLNKPNKQTILPLAEIPGL 261
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
DSLP+ K+K LGGK G + LG+ +G L+K++E +LQ + GTWL+ ++RGI
Sbjct: 262 FDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEGELQRKFDEKNGTWLFYMSRGID 321
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G K FPG + + S+QHWL +L E+++RL D +N R A +
Sbjct: 322 LEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSIEINDRLEKDFIENNRKAKQM 381
Query: 230 TLH 232
+
Sbjct: 382 VVQ 384
>gi|157817057|ref|NP_001101674.1| DNA polymerase eta [Rattus norvegicus]
gi|149069361|gb|EDM18802.1| polymerase (DNA directed), eta (RAD 30 related) (predicted) [Rattus
norvegicus]
Length = 689
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 153/279 (54%), Gaps = 14/279 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 181 DPTSPDLRLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 240
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +PI+K++ LGGKLG S+ + LGV +GDL +F+E +LQ +G G+WL+ +
Sbjct: 241 SVPQLFSQMPIRKIRSLGGKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAM 300
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI E V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 301 CRGIEHEPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDNGR 360
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A L + + D R + C L RY K+ +D F A +R + GV+
Sbjct: 361 VATQLVVSIRV----EGDKRLSSLRRCCALTRYDAHKMSQDAF----ATIRN-CNTSGVQ 411
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
T+ S +T L + A+K C+ + F D
Sbjct: 412 TEWSP----PLTMLFLCATKFSASAPPACTDITVFLSSD 446
>gi|170034418|ref|XP_001845071.1| DNA polymerase eta [Culex quinquefasciatus]
gi|167875704|gb|EDS39087.1| DNA polymerase eta [Culex quinquefasciatus]
Length = 820
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/355 (34%), Positives = 180/355 (50%), Gaps = 26/355 (7%)
Query: 7 PESLDE---VDEEALKSHILGLESK-DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTE 62
PE+LD V E++ ++ + DG S ++ R D L G IV E
Sbjct: 150 PETLDNTFAVGYESVGQYVQKISCDLDGRSSSQELESEEDRVAYKKSDIKLLIGASIVNE 209
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R V ++T + CSAGIAHNK+LAKL +G NKP +QT +P S+ L +L IKK+K LG
Sbjct: 210 IRAAVKEKTGYECSAGIAHNKILAKLTAGFNKPNKQTVLPLKSISKLYQTLQIKKVKGLG 269
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
GKLG + L + + L +FSE +LQ + G+W++ +ARGI E V + KS
Sbjct: 270 GKLGEQVCELLKIEFMSQLTQFSEKQLQAHFDERMGSWMYLMARGIDLEAVTPKFNSKSI 329
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL-HASAFKSSDS 241
G K FPG A+ +A++QHWL +L E+ +RL DL++N R A +T+ +A +D
Sbjct: 330 GCCKRFPGKNAITGLATLQHWLGELANEIQDRLEKDLDENNRTARQMTVSYAQQIGDNDV 389
Query: 242 DSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GSFGVKTQGSHYSGWRITALS 298
S ++S PL Y +I +D + FL GS G + L
Sbjct: 390 SS-----TRSVPLVCYEAERIAKDALEAIRRNTEVFLKQGSNGALNNAVKF-------LG 437
Query: 299 VSASKIVPVLSGTCSIMK--YFNGPDKF---GSTSEQLPDNFIDAAPLSPSGSES 348
+SA K +G S +K + N K G TS+ P ++ + A +P+ ES
Sbjct: 438 ISAGKFENNATGKKSALKEMFSNIASKAPNPGETSKDAPTSY-NIASNAPNSGES 491
>gi|301626020|ref|XP_002942198.1| PREDICTED: DNA polymerase eta-like [Xenopus (Silurana) tropicalis]
Length = 300
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 103/154 (66%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D LA G +IV E+R V KET F CSAGIAHNK+LAKLA G+NKP +QT + SV GL
Sbjct: 124 DLKLAVGAIIVEEMRAAVEKETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQGSVPGL 183
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
LPI K++ LGGKLGTS++ L V +G L +F+E LQ +G TG+WL+++ RGI
Sbjct: 184 FSELPISKVRHLGGKLGTSIRESLSVEYIGQLTQFTEQHLQNHFGEKTGSWLYSLCRGIE 243
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 203
E V+ R LPKS G K FPG AL T VQ+W
Sbjct: 244 DEPVKPRQLPKSIGCSKIFPGKTALSTQEQVQYW 277
>gi|327262355|ref|XP_003215990.1| PREDICTED: DNA polymerase eta-like [Anolis carolinensis]
Length = 689
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 149/275 (54%), Gaps = 17/275 (6%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G +I+ E+R V T F CS GI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 190 LTVGAVIMEEMRAAVESATGFRCSVGISHNKVLAKLACGLNKPNRQTLVSQGSVPQLFSK 249
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
+PI ++ LGGKLG S+ LGV VG L++FSE +LQ +G TG+WL+++ RGI E
Sbjct: 250 MPIGNIRNLGGKLGASVTELLGVEYVGQLIQFSELQLQMHFGDKTGSWLYDLCRGIEHEP 309
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ R LPKS G K+F G AL T VQHWL QL EL ERL D +QN R A L++
Sbjct: 310 VKPRQLPKSIGCSKNFRGREALVTQKQVQHWLLQLALELEERLNKDRDQNNRTAKQLSIG 369
Query: 233 ASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
S + S+ C L +Y KI +D F + Q G +
Sbjct: 370 IRMQGSKNPSGL----SRCCALSQYDAHKISQDAFAVIQ----------NCNAAGGLQAA 415
Query: 292 WR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKF 324
W +T L +SA+K V ++ + I + + ++
Sbjct: 416 WSPPVTLLQLSATKFVEEMTSSGDITAFLSNDSQY 450
>gi|198430107|ref|XP_002128588.1| PREDICTED: similar to polymerase (DNA directed), eta [Ciona
intestinalis]
Length = 785
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 121/205 (59%), Gaps = 10/205 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L IV ++R+ + ++T F CSAGI+HNKML+KL+ G+NKP +QT +PF+ V GL +
Sbjct: 190 LLVAAAIVEKMRLAIYQQTSFRCSAGISHNKMLSKLSCGINKPNKQTILPFNMVAGLFQT 249
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
+ I K++ LGGKLG + GV +G L ++ L + +G TG WL+ + GI E
Sbjct: 250 IKIGKIRNLGGKLGKEIMFRFGVEKIGHLTNQTKQHLVDGFGEKTGLWLYEVCHGIDHEP 309
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ R + +S G K+F G AL + V+HW+ L EL ERL D + N R++H LT+H
Sbjct: 310 VKERHVAQSVGCSKNFTGNDALGSRNKVKHWVRCLTTELVERLNKDKQMNNRVSHALTIH 369
Query: 233 ASAFKSSDSDSRKKFPSKSCPL-RY 256
KK S++CP+ RY
Sbjct: 370 IGI---------KKPISRTCPISRY 385
>gi|344259088|gb|EGW15192.1| DNA polymerase eta [Cricetulus griseus]
Length = 633
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 152/275 (55%), Gaps = 14/275 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
DA D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 119 DATSPDLQLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 178
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 179 SVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAM 238
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPKS G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 239 CRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEERLTKDRNDNDR 298
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A L + D R + C L +Y K+ +D F A +R + G++
Sbjct: 299 VATQLAVSIRV----QGDKRLSSLRRCCALTQYDAHKMSQDAF----AAIRN-CNTSGIQ 349
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
T+ S +T L + A+K +C+ + F
Sbjct: 350 TEWSP----PLTMLFLCATKFSASAPSSCTDITVF 380
>gi|354506314|ref|XP_003515209.1| PREDICTED: DNA polymerase eta [Cricetulus griseus]
Length = 695
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 152/275 (55%), Gaps = 14/275 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
DA D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 181 DATSPDLQLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 240
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 241 SVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAM 300
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPKS G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 301 CRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEERLTKDRNDNDR 360
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A L + D R + C L +Y K+ +D F A +R + G++
Sbjct: 361 VATQLAVSIRV----QGDKRLSSLRRCCALTQYDAHKMSQDAF----AAIRN-CNTSGIQ 411
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
T+ S +T L + A+K +C+ + F
Sbjct: 412 TEWSP----PLTMLFLCATKFSASAPSSCTDITVF 442
>gi|118763825|gb|AAI28367.1| Polh protein [Mus musculus]
Length = 556
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 150/279 (53%), Gaps = 14/279 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 43 DPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 102
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+ +
Sbjct: 103 SVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAM 162
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 163 CRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDNDR 222
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A L + D R + C L RY K+ +D F A +R + G++
Sbjct: 223 VATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQ 273
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
T+ S +T L + A+K C+ + F D
Sbjct: 274 TEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 308
>gi|157106621|ref|XP_001649408.1| DNA polymerase eta [Aedes aegypti]
gi|108879827|gb|EAT44052.1| AAEL004562-PA [Aedes aegypti]
Length = 852
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 12/284 (4%)
Query: 29 DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 88
DG S ++ R D L G IV E+R V ++T + CSAGIAHNK+LAKL
Sbjct: 176 DGRVSSQELESEEDRVAYKKSDIKLLIGASIVNEIRAAVKEKTGYECSAGIAHNKILAKL 235
Query: 89 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 148
+G +KP +QT +P + + ++L +KK+K LGGKLG + L + T+ +L KF E
Sbjct: 236 TAGFHKPNKQTILPLKCISKMYETLSLKKVKGLGGKLGDQVCELLKIQTMSELAKFPEKV 295
Query: 149 LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 208
LQ + G+W++ +A+GI E V + KS G K FPG A+ +A+++HWL +L
Sbjct: 296 LQNHFDDRMGSWMYLMAKGIDLEAVTPKFNSKSIGCCKRFPGKNAISGIATLKHWLGELA 355
Query: 209 EELSERLCSDLEQNKRIAHTLTL-HASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTF 266
E+ ERL DL++N R A +T+ +A F +D S ++S PL Y +I D
Sbjct: 356 NEIQERLEKDLDENNRTAKQMTVSYAQQFGQNDVSS-----TRSVPLVGYNAERIAADAL 410
Query: 267 NLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSG 310
+ FL K+ S I L +SA K +SG
Sbjct: 411 EAIKRNTDVFL-----KSDSSGALNKPIKFLGISAGKFDDNVSG 449
>gi|17105328|ref|NP_109640.1| DNA polymerase eta [Mus musculus]
gi|59798431|sp|Q9JJN0.1|POLH_MOUSE RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
homolog
gi|8918248|dbj|BAA97570.1| XPV [Mus musculus]
gi|26331290|dbj|BAC29375.1| unnamed protein product [Mus musculus]
gi|148691533|gb|EDL23480.1| polymerase (DNA directed), eta (RAD 30 related) [Mus musculus]
Length = 694
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 150/279 (53%), Gaps = 14/279 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 181 DPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 240
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+ +
Sbjct: 241 SVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAM 300
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 301 CRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDNDR 360
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A L + D R + C L RY K+ +D F A +R + G++
Sbjct: 361 VATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQ 411
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
T+ S +T L + A+K C+ + F D
Sbjct: 412 TEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 446
>gi|328700741|ref|XP_001945230.2| PREDICTED: DNA polymerase eta-like [Acyrthosiphon pisum]
Length = 744
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 157/308 (50%), Gaps = 27/308 (8%)
Query: 20 SHILGLESKDGNDSKATVKEWL--CRCDADHRDKLL--ACGVLIVTELRMQVLKETEFTC 75
+ + G + D +K WL + D LL G ++V +LR + ++T F C
Sbjct: 146 TFVEGYSDDNSKDKNKNLKSWLHDVYNNELQDDYLLRLTIGAMMVEKLRQSIFEQTGFRC 205
Query: 76 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 135
SAGIA+NK+L+KLA G++KP QQT +P SSV L +++PIKK+K LGGKLG ++ E
Sbjct: 206 SAGIANNKILSKLACGLHKPNQQTMLPPSSVPHLFETIPIKKVKNLGGKLGERIRQEFNC 265
Query: 136 TTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALK 195
+ DL + LQ+ + T +L+ I++GI E V++RL+PKS GS KSFP LK
Sbjct: 266 EFMSDLAAIPLNDLQQKFNDKTCNFLYQISKGIDNEPVESRLIPKSIGSCKSFPT--GLK 323
Query: 196 TVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSC--P 253
++ WLN L ++ ++L D E NKR A +T+ D + K P+ C
Sbjct: 324 VKEEIKQWLNTLMNDIVDKLKDDYEANKRKATLMTVSVRYL-----DKKTKLPTSQCFEV 378
Query: 254 LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKIVPVLSGT 311
Y K+ + + S T+ W+ I+ L V+ + V ++
Sbjct: 379 TTYSHNKLLDTAY-----------SSLCTMTENQKSLQWKNPISFLGVAIGRFVE-MNVK 426
Query: 312 CSIMKYFN 319
SI YFN
Sbjct: 427 SSIDNYFN 434
>gi|195022393|ref|XP_001985566.1| GH17135 [Drosophila grimshawi]
gi|193899048|gb|EDV97914.1| GH17135 [Drosophila grimshawi]
Length = 871
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 109/183 (59%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G I E+R V ET + CSAGIAHNK+LAKL +GMNKP +QT +P + + L
Sbjct: 203 DLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLVAGMNKPNKQTILPLAEIPAL 262
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
D LP+ K+K LGGK G ++ LG+ +G +LK++E +LQ +GTWL IA GI
Sbjct: 263 FDQLPVGKIKGLGGKFGETVCETLGIKFLGHVLKYTEKELQRKLDEKSGTWLHQIACGID 322
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V R KS G K FPG + + S+QHWL +L E+++RL D +N R A +
Sbjct: 323 LEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELASEMNDRLEKDFIENNRKAKQM 382
Query: 230 TLH 232
+
Sbjct: 383 VVQ 385
>gi|149583604|ref|XP_001516192.1| PREDICTED: DNA polymerase eta [Ornithorhynchus anatinus]
Length = 729
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 133/228 (58%), Gaps = 5/228 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D+ D L G +IV E+R + K+T + CSAGI+HNK+LAKLA G+NKP +QT +
Sbjct: 182 DSSSPDLRLTVGAVIVEEMRAAIEKDTGYQCSAGISHNKVLAKLACGLNKPNRQTLLSHG 241
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V L D +PI K++ LGGKLG S+ + LGV +G L F+E +LQ +G TG+WL+ +
Sbjct: 242 FVPELFDQMPIGKIRSLGGKLGASITDNLGVEYMGQLTHFTESQLQSHFGEKTGSWLFAM 301
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R +P + G K+FPG AL T VQ WL QL EL ERL D + N R
Sbjct: 302 CRGIEHDPVKPRQVPNTVGCSKNFPGKTALATEEQVQWWLLQLALELEERLNKDRDDNDR 361
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQA 271
+A L++ A D R + CPL RY K+ D L ++
Sbjct: 362 VATHLSVSARI----QGDKRLSSLRRGCPLTRYDARKMSSDALALIRS 405
>gi|339234771|ref|XP_003378940.1| DNA polymerase eta [Trichinella spiralis]
gi|316978474|gb|EFV61459.1| DNA polymerase eta [Trichinella spiralis]
Length = 633
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 137/256 (53%), Gaps = 15/256 (5%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G ++V +R Q+ ++T F CSAGIA NKMLAKLA G+NKP QQT V SSV
Sbjct: 172 LHVIGAVLVNRIRKQIFEKTNFYCSAGIAVNKMLAKLACGLNKPKQQTIVLPSSVAEFFS 231
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG---TWLWNIARGI 168
++PI+K++ LGGKLG + + T+ +L + L++ G T WL + GI
Sbjct: 232 TVPIRKVRNLGGKLGYKITKHFEIETMRELANLNPSLLEKFVGEKTKLVLNWLLELCCGI 291
Query: 169 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 228
+ V R LPKS G K+FPG AL++V V+HW QL EEL ERL N RIA +
Sbjct: 292 DRDPVVIRQLPKSIGCSKNFPGRNALRSVNDVRHWTRQLSEELEERL------NCRIAKS 345
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
LT+ + ++++ ++ Y I +D F L Q EF + Q S
Sbjct: 346 LTVGIRTEEKPENEANCHSSRQTFLRDYSAEVISQDAFGLIQ----EF--NTNSAKQSSI 399
Query: 289 YSGWRITALSVSASKI 304
+ IT LS+SAS+
Sbjct: 400 WLKPAITMLSMSASRF 415
>gi|307103424|gb|EFN51684.1| hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis]
Length = 720
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 149/263 (56%), Gaps = 25/263 (9%)
Query: 70 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 129
E ++CSAG+AH+K++AKL SG++KPAQQT +P S+V LL LPI K+K LGGKLG +
Sbjct: 219 ELGYSCSAGVAHSKLMAKLCSGLHKPAQQTVLPASAVAALLGQLPIPKLKGLGGKLGERV 278
Query: 130 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 189
+ELGV TVG L +L+ ++G WL +ARG + ++V+ R L KS G GK+F
Sbjct: 279 MSELGVETVGQLAAVPLSRLEAAFGEKEAQWLAALARGATDDKVEERRLAKSVGCGKTFR 338
Query: 190 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA----FKSSDSDSRK 245
G +AL+ +A+V WL +L EL+ERL DL++N R A LT+ + +
Sbjct: 339 GRQALRDLAAVHKWLLELGGELAERLQEDLQENSREAKLLTVSFAPQLPWVATQQPGGTA 398
Query: 246 KF--------PSKSCPLRYGTAK-IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA 296
F ++SCPLR TA+ I ED L + E QG GW ++
Sbjct: 399 LFHAAPGYHATTRSCPLRKATAEAIAEDALALIKRWAAE---------QGQ---GWSLST 446
Query: 297 LSVSASKIVPVLSGTCSIMKYFN 319
+ V+AS V V S +I ++F
Sbjct: 447 MDVAASNFVAVQSAASAITRFFK 469
>gi|308809351|ref|XP_003081985.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
gi|116060452|emb|CAL55788.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
Length = 595
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 136/256 (53%), Gaps = 15/256 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
+KLLA G I LR + E +T SAGIA NKMLAKL SGMNKPA QT + + L
Sbjct: 257 EKLLAAGAYICHNLRKACVDELGYTLSAGIATNKMLAKLTSGMNKPASQTVLCPDHTEAL 316
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LPI +++ LG K G L L V T+G+L + KL+E G W+ ++ G
Sbjct: 317 LAELPIDRIRGLGAKFGRELVEGLDVKTIGELARTPIRKLEEICGEERAQWVRKVSLGQD 376
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R +PKS G+GK+F G A++++ S + WL +L EL++R D ++ R L
Sbjct: 377 DDPVKEREMPKSIGTGKTFRGALAIRSLESAKKWLAELAAELNDRCEDDRDEWNREPKLL 436
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 289
TL S+ +++S S+ CP+R G +I +D L + S
Sbjct: 437 TLGLSSPDELNTNS--GHCSRRCPMRLGADEITQDALAL-------------ISKWSSGR 481
Query: 290 SGWRITALSVSASKIV 305
S W IT +SVSAS V
Sbjct: 482 SDWSITGMSVSASNFV 497
>gi|355561734|gb|EHH18366.1| hypothetical protein EGK_14943 [Macaca mulatta]
Length = 690
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 139/274 (50%), Gaps = 36/274 (13%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T EQN R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALAT----------------------REQNDRVATQL 344
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 345 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP 395
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
+T L + A+K +C+ + F D
Sbjct: 396 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 425
>gi|355748582|gb|EHH53065.1| hypothetical protein EGM_13625 [Macaca fascicularis]
Length = 690
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 119/222 (53%), Gaps = 27/222 (12%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPK+ G K+FPG AL T EQN R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALAT----------------------REQNDRVATQL 344
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
+ D R + C L RY K+ D F + +
Sbjct: 345 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 382
>gi|413943903|gb|AFW76552.1| hypothetical protein ZEAMMB73_679088 [Zea mays]
Length = 409
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
ML + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLL CG +IV
Sbjct: 200 MLLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLTCGAIIV 258
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM KPAQQT VP SSV+ LL SLP+KKM
Sbjct: 259 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMRKPAQQTVVPSSSVQDLLASLPVKKMYH 318
Query: 121 LGGKLGTSLQNELGVTTVGDLL 142
+ K+ + E + V +L
Sbjct: 319 VHEKITNFMAPEPMILFVSGVL 340
>gi|47223238|emb|CAF98622.1| unnamed protein product [Tetraodon nigroviridis]
Length = 671
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 126/255 (49%), Gaps = 57/255 (22%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA G LIV E+R V K+T F CSAGI+HNK+LAKLA G+NKP +QT +P SV L S
Sbjct: 198 LAVGALIVEEMRAAVEKDTGFRCSAGISHNKVLAKLACGLNKPNRQTLLPLGSVGELFSS 257
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI K++ WL+++ RG+ E
Sbjct: 258 LPIGKIQ----------------------------------------WLYDLCRGVDFEA 277
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ R LPKS G K+FPG +L T VQ+WLNQL EL ERL D E N R+A LT+
Sbjct: 278 VKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLNQLALELEERLTKDREANGRVAKMLTVG 337
Query: 233 ASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
D R S+ C L RY K+ D+F + ++ + T G H +
Sbjct: 338 VRQL----GDKRPSSFSRCCALVRYEATKLATDSFAIIRS----------LNTAGPHQAT 383
Query: 292 WR--ITALSVSASKI 304
W +T L +SA+K
Sbjct: 384 WTPPLTMLHLSATKF 398
>gi|444725442|gb|ELW66006.1| DNA polymerase eta [Tupaia chinensis]
Length = 681
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 137/270 (50%), Gaps = 36/270 (13%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERQTSFQCSAGISHNKVLAKLACGLNKPNRQTLVSLGSVPQL 246
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPICKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ V+ R LPKS G K+FPG AL T EQN R+A L
Sbjct: 307 HDPVKPRQLPKSIGCSKNFPGKTALAT----------------------REQNDRVATQL 344
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ D R + C L Y K+ D F A +R + G++T+ S
Sbjct: 345 AVSIRV----QGDKRLSSLRRCCALSHYDAHKMSHDAF----AAIRN-CNTSGIQTEWSP 395
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+T L + A+K +C+ + F
Sbjct: 396 ----PLTMLFLCATKFSACAPSSCTDITAF 421
>gi|324509837|gb|ADY44123.1| DNA polymerase eta [Ascaris suum]
Length = 602
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 116/204 (56%), Gaps = 4/204 (1%)
Query: 32 DSKATVKEWLCRCDADHRDKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 90
D +A ++EW+ R L LA IV +R ++ ++T+F+CSAGI NKM+AKL
Sbjct: 173 DREANLREWIIEACVQQRQALRLAVAAEIVERIRAEIKEKTQFSCSAGIGSNKMIAKLIC 232
Query: 91 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 150
+KP QQT +P + + S I ++ LGGKLG +L N + T+ +L S +L
Sbjct: 233 SRHKPGQQTIIPDEFIAEIFRSTRILSIRNLGGKLGHALMNAFSIETMSELCGISMQQLS 292
Query: 151 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 210
E + W++NIARGI E V+AR S K+FPG AL + + VQ WL+ L +E
Sbjct: 293 EHFSAQ-AKWIYNIARGIDDEPVRARDKQSSIAVSKNFPGSSALTSTSEVQTWLDGLVKE 351
Query: 211 LSERLCSDLEQNKRIAHTLTLHAS 234
L++RL D +NKR A TLH S
Sbjct: 352 LAKRLIDDQIKNKRTA--CTLHVS 373
>gi|297290923|ref|XP_002803805.1| PREDICTED: DNA polymerase eta-like [Macaca mulatta]
Length = 730
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 135/268 (50%), Gaps = 20/268 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
G E +V K F C ++LAKLA G+NKP +QT V SV L +PI
Sbjct: 217 GPTTAEETVQKVTKFLHFAC------FQVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPI 270
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+
Sbjct: 271 RKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKP 330
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L +
Sbjct: 331 RQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV 390
Query: 236 FKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 294
D R + C L RY K+ D F + + + G++T+ S +
Sbjct: 391 ----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP----PL 437
Query: 295 TALSVSASKIVPVLSGTCSIMKYFNGPD 322
T L + A+K +C+ + F D
Sbjct: 438 TMLFLCATKFSASAPSSCTDITSFLSSD 465
>gi|297713023|ref|XP_002833023.1| PREDICTED: DNA polymerase eta, partial [Pongo abelii]
Length = 492
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 14/240 (5%)
Query: 84 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 143
+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +
Sbjct: 1 VLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQ 60
Query: 144 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 203
F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ W
Sbjct: 61 FTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWW 120
Query: 204 LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQ 262
L QL +EL ERL D N R+A L + D R + C L RY K+
Sbjct: 121 LLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMS 176
Query: 263 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
D F + + + G++T+ S +T L + A+K +C+ + F D
Sbjct: 177 HDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 227
>gi|302833114|ref|XP_002948121.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
gi|300266923|gb|EFJ51109.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
Length = 1251
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 35/294 (11%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D ++LL G ++ +LR +L+E ++CSAG+AH K++AKL SG++KP QQT V +V
Sbjct: 155 DPHERLLVAGAVVAAQLRSALLRELGYSCSAGVAHYKLMAKLGSGLHKPNQQTVVLARAV 214
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
LL +LP+ K++ LG K G +Q LG+ T+G+L +L+ YG L +A
Sbjct: 215 PTLLRNLPLAKLRSLGPKFGEQVQEGLGIQTLGELWSVPASRLESLYGPEAAAGLMRLAA 274
Query: 167 GI-SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
G+ G+ V RL PK+ GK+F G AL+ + V L QL E+SER+ +D + R+
Sbjct: 275 GMDEGDMVSPRLAPKTLSCGKTFRGSSALQDIRQVSPRLMQLAAEMSERIEADRRDHGRL 334
Query: 226 AHTLTL--------------------HASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQED 264
LTL + + S+SC L R T I E
Sbjct: 335 PTQLTLTLQTGAPGLAGAGAGEAAGGPGAGGGGAGGGGNGSTHSRSCRLARTSTECIAEV 394
Query: 265 TFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
L V+ + SGWRIT LS++ S+ SG ++ ++
Sbjct: 395 ATGL-------------VRKWAAERSGWRITGLSITTSRFDSAPSGPSTLARFL 435
>gi|332030091|gb|EGI69916.1| DNA polymerase eta [Acromyrmex echinatior]
Length = 787
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 78 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT 137
IA +LAKLA G++KP +QT +P ++V L +LP+KK++ LGGK G + LG
Sbjct: 187 AIAGIIILAKLACGLHKPNRQTILPEAAVSSLYSTLPVKKVRNLGGKFGDVVVESLGCKV 246
Query: 138 VGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTV 197
+GDLL++S ++L++ + TG WL+NIARGI E V RLL KS G+ K FPG +A+ ++
Sbjct: 247 MGDLLQYSLEQLKKHFDEKTGFWLYNIARGIDDEPVTNRLLAKSIGACKKFPGKQAITSL 306
Query: 198 ASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 244
++HW L E+ ERL D +N+R A L + H +S+ S +R
Sbjct: 307 EVLKHWAGDLAAEVCERLEEDFIENQRRATLLVISYHYYHNRSTVSQTR 355
>gi|298710336|emb|CBJ31954.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 644
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 107/188 (56%), Gaps = 3/188 (1%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D+ L G + +R+ V +E FT SAGIA NK+LAKLAS +NKP +QT VP + +
Sbjct: 178 DRALLAGARLTAAMRLAVEQELGFTVSAGIASNKVLAKLASSINKPNKQTVVPAGASSDM 237
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
LD++P++ ++ LGGKLG ++ + DL +FS+ L ++G TG WLW RG+
Sbjct: 238 LDTVPLRSVRGLGGKLGETVVSWSKAEKASDLKRFSQQDLVGNFGTKTGEWLWRACRGMD 297
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E V L PKS KSF ++ SV +W+ LC ELS+R+ D E R A L
Sbjct: 298 DEPVAPNLKPKSLSVCKSFT---PVRDEESVLNWMRLLCTELSQRIAVDREAWSRRATKL 354
Query: 230 TLHASAFK 237
TL + K
Sbjct: 355 TLQMISLK 362
>gi|428181880|gb|EKX50742.1| hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta
CCMP2712]
Length = 334
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 115/190 (60%), Gaps = 11/190 (5%)
Query: 3 AETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTE 62
A+ P LDE+D K+ + G E + GN + + L R R LLA G +VT+
Sbjct: 151 ADVGPTLLDEMD----KTWVAGYEQQTGNGQEEWWRRPLSRWKTSER--LLAAGAQVVTK 204
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R VL+ET FTCSAGI+HNK+LAKL SG++KP QQT +P + + L+ LPI +++ LG
Sbjct: 205 MRRAVLEETSFTCSAGISHNKILAKLGSGLHKPNQQTILPTEAAQKLMQDLPISRLRGLG 264
Query: 123 G-KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT----GTWLWNIARGISGEEVQARL 177
G KLG ++Q E V TVG+L K L +G + G W++ IA+GI + V+ +
Sbjct: 265 GEKLGKAIQEEFHVETVGELQKIPCPLLVSKFGDSPKPPGGLWVYRIAKGICLQPVKDQE 324
Query: 178 LPKSHGSGKS 187
L KS GSGKS
Sbjct: 325 LAKSRGSGKS 334
>gi|312079328|ref|XP_003142126.1| hypothetical protein LOAG_06542 [Loa loa]
gi|307762710|gb|EFO21944.1| hypothetical protein LOAG_06542 [Loa loa]
Length = 545
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 102/179 (56%), Gaps = 1/179 (0%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G ++ ++R + K T F CSAGI +KM+AKL +KP QQT V ++ + +
Sbjct: 197 LIIGADVIEQIRSAIKKNTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEAIPKVFEY 256
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
PI +++ LGGKLG +L + V T+G+L + S L E + W++NIARGI E+
Sbjct: 257 TPINEVRNLGGKLGRALVEKFDVKTMGELSQISMSDLSECFPAQ-AKWIYNIARGIDEEK 315
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V AR S K+FPGP ALKT V+ WL L +EL +RL D N R A TL +
Sbjct: 316 VTARDKQSSVAVSKNFPGPNALKTDGDVKFWLEGLIKELVKRLIDDQITNIRTASTLHI 374
>gi|332234353|ref|XP_003266375.1| PREDICTED: DNA polymerase eta [Nomascus leucogenys]
Length = 723
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 141/300 (47%), Gaps = 31/300 (10%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM----------- 84
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+
Sbjct: 173 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKIDNLTSPDLQLT 232
Query: 85 -LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 143
A + M ++ T + S I + LGGKLG S+ LG+ +G+L +
Sbjct: 233 VGAVIVEEMGAAIERETDIYDVTYQFFVSFVISR--SLGGKLGASVIEILGIEYMGELTQ 290
Query: 144 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 203
F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ W
Sbjct: 291 FTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWW 350
Query: 204 LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQ 262
L QL +EL ERL D N R+A L + D R + C L RY K+
Sbjct: 351 LLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMS 406
Query: 263 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
D F + + + G++T+ S +T L + A+K +C+ + F D
Sbjct: 407 HDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 457
>gi|298709408|emb|CBJ49221.1| translesion synthesis DNA polymerase eta splice variant [Ectocarpus
siliculosus]
Length = 838
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 20 SHILGLESKDGNDSK--ATVKEWLCRC-DADHRDK-LLACGVLIVTELRMQVLKETEFTC 75
+H+ GL + + A W R +A RD+ LL+CG +V+ LR V E ++C
Sbjct: 258 THVAGLSDDHASKEQQLADGVSWWARTQEAFTRDQELLSCGAAVVSRLRAAVRSELGYSC 317
Query: 76 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 135
+AG+AHNK+LAKL S M+KP QT +P V+ + +LP+++++ GGK G + +LGV
Sbjct: 318 TAGVAHNKLLAKLCSNMHKPNAQTVLPLDKVEVVFHTLPVERVRGWGGKFGVKMMEKLGV 377
Query: 136 TTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALK 195
+T G++ +LQ G G W + I + V AR PKS G K+FPG L
Sbjct: 378 STAGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVNARSAPKSVGCSKTFPGKTKLT 437
Query: 196 TVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 239
+ + ++ WL++L +EL RL E + LT+ +A + +
Sbjct: 438 SFSEIERWLSELSKELISRLVEQQEGEGQTPSKLTVSFAALQQA 481
>gi|402588248|gb|EJW82181.1| ImpB/MucB/SamB family protein [Wuchereria bancrofti]
Length = 518
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 107/190 (56%), Gaps = 2/190 (1%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C+ D++ KL+ G +V ++R + + T F CSAGI +KM+AKL +KP QQT V
Sbjct: 187 CKTKDDYKLKLI-IGADLVEQIRRNIKESTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVV 245
Query: 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
++ + + PI +++ LGGKLG +L + + T+G+L K S L E Y W+
Sbjct: 246 FNEAIPKVFEYTPINEVRNLGGKLGRALMEKFDIKTMGELSKISMSHLSE-YFPAQAKWV 304
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+NIA GI E+V AR S K+FPG ALKT V+ WL L +EL +RL D
Sbjct: 305 YNIAHGIDEEKVTARDKQSSVAVSKNFPGVNALKTDVDVKFWLEGLVKELVKRLIDDQIA 364
Query: 222 NKRIAHTLTL 231
N R A TL +
Sbjct: 365 NIRTASTLHI 374
>gi|256075427|ref|XP_002574021.1| DNA polymerase eta [Schistosoma mansoni]
gi|353229352|emb|CCD75523.1| putative DNA polymerase eta [Schistosoma mansoni]
Length = 400
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 111/196 (56%), Gaps = 1/196 (0%)
Query: 39 EWLCRCDADHRD-KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 97
+W+ D++ + + LA +V +R V +T F CSAGI NK +AKLA +NKP +
Sbjct: 125 DWIKLLDSNFAEGRRLAVASELVYRIRQAVFTKTGFKCSAGIGPNKSIAKLACSLNKPNK 184
Query: 98 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 157
QT +P S+ LL++ I K++ LGGKLG+++ +L + T+G L L + +G T
Sbjct: 185 QTIIPQESIPILLENTHINKIRNLGGKLGSTVVKKLKIETLGQLSSIPLSVLTKEFGEKT 244
Query: 158 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 217
WL +++ GI E V R LPKS G K+F G L + ++ WL L EE+ ERL
Sbjct: 245 SKWLHDLSHGIDHEVVTTRSLPKSVGCSKNFLGRATLTSSEQIKRWLLCLAEEIFERLDV 304
Query: 218 DLEQNKRIAHTLTLHA 233
D Q++R L L+A
Sbjct: 305 DYHQHQRYPTRLILYA 320
>gi|412988027|emb|CCO19423.1| DNA polymerase eta [Bathycoccus prasinos]
Length = 741
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 130/272 (47%), Gaps = 15/272 (5%)
Query: 38 KEWLCR--CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
K WL R + HR+KL G + R +T S G++ NKMLAKL SGMNKP
Sbjct: 285 KSWLNRPLSEWSHREKLKIAGAYVCNVAREDCFVNLGYTLSCGVSSNKMLAKLTSGMNKP 344
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
T + S LL+ LPI +++ LGG LG L LGVTT+G L K L + G
Sbjct: 345 NCCTILEESFTPSLLEHLPIDRIRGLGGNLGEELSEVLGVTTIGGLAKADRKSLLMALGR 404
Query: 156 NTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
+ LW ARG+ + V+ R PKS + K+F G L+T V W+ +L EELSE
Sbjct: 405 DEKKTLWVQRAARGVDDDPVKERSAPKSIATSKTFRGAMCLETTDQVLKWIGELAEELSE 464
Query: 214 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 273
R D + +R TLTL + ++ S R S PL Q D +
Sbjct: 465 RTELDGQDWRRHPKTLTLGIRSNLTAHSAHR------SHPLSGSGNDCQADNLKTLGGTI 518
Query: 274 -REFLGSFGVKTQGSHYSGWRITALSVSASKI 304
++FL +G+ G++ T LS++ S
Sbjct: 519 FKKFLAEWGIMNN----RGFQCTVLSLTTSNF 546
>gi|170581390|ref|XP_001895662.1| ImpB/MucB/SamB family protein [Brugia malayi]
gi|158597305|gb|EDP35487.1| ImpB/MucB/SamB family protein [Brugia malayi]
Length = 500
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 100/179 (55%), Gaps = 1/179 (0%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G +V ++R + K T F CSAGI +KM+AKL +KP QQT V ++ + +
Sbjct: 145 LIIGADLVEQIRRNIKKSTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEAIPKVFEY 204
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
PI +++ LGGKLG +L + + T+G+L + S L E Y W++NIA GI E+
Sbjct: 205 TPINEVRNLGGKLGRALMEKFNIKTMGELSEISMSHLSE-YFPAQAKWIYNIAHGIDDEK 263
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V AR S K+FPG ALKT V+ WL L +EL +RL D N R A TL +
Sbjct: 264 VTARDKQSSVAVSKNFPGANALKTDVDVKFWLEGLVKELVKRLIDDQIANIRTASTLHI 322
>gi|75756001|gb|ABA27055.1| TO87b-2 [Taraxacum officinale]
Length = 95
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 74/102 (72%), Gaps = 7/102 (6%)
Query: 212 SERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 271
SERL +D+E NKRIAHTLTLH +A+K D D+ KKFPSKSCPLRYG K+ ED NLF
Sbjct: 1 SERLHTDMETNKRIAHTLTLHVTAYKCGDRDTDKKFPSKSCPLRYGAGKVLEDAVNLFHC 60
Query: 272 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCS 313
GLRE++ Q S GWRIT LSVSASKIV + SGTCS
Sbjct: 61 GLREYMNH-----QSS--GGWRITGLSVSASKIVDIPSGTCS 95
>gi|115534089|ref|NP_497480.2| Protein POLH-1 [Caenorhabditis elegans]
gi|84570637|dbj|BAE72703.1| DNA polymerase eta [Caenorhabditis elegans]
gi|373218637|emb|CCD62153.1| Protein POLH-1 [Caenorhabditis elegans]
Length = 584
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LL + V ++R Q+ +ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+ +L
Sbjct: 188 LLLIAAVTVEQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQTLIPWFYVREILR 247
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
PI ++ GGK+G +Q L +T +G+LL+ +L E++ N +L ++A G E
Sbjct: 248 LTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFP-NQHEYLRSVAEGHCDE 306
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 230
V+ R S K+FPG ++++V ++ WL+ L +EL++RL +D +NKR A L
Sbjct: 307 PVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLATDQAENKRTAENLV 365
>gi|341901232|gb|EGT57167.1| CBN-POLH-1 protein [Caenorhabditis brenneri]
Length = 587
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LL V +R ++ +ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+ +L
Sbjct: 186 LLLIAACTVEAIRDRIHEETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWVYVREILR 245
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+ PI ++ GGKLG +Q L +T +G++L+ L ES+ + +L IA+G+ E
Sbjct: 246 TTPIGDVRGFGGKLGNRVQELLNITLMGEILEIDYSLLVESFP-DQHEYLIAIAQGMCDE 304
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 230
V+ R S K+FPG A++T+ ++ WL+ L +EL++RL +D +NKR A L
Sbjct: 305 PVRPRKESSSIAVSKNFPGKLAIRTIQELRKWLDGLTKELAKRLWTDQNENKRTAENLV 363
>gi|358060048|dbj|GAA94107.1| hypothetical protein E5Q_00754 [Mixia osmundae IAM 14324]
Length = 628
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 131/271 (48%), Gaps = 13/271 (4%)
Query: 49 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 108
+D LA G ++ + R +V + +TCSAGIA NKML+KL S KP QT + ++V
Sbjct: 225 QDVALALGAEMMEKCRKEVYTQLGYTCSAGIAKNKMLSKLCSAWKKPNAQTVLRDTAVHN 284
Query: 109 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 168
L L +K++ LGGKLG SL NE +TVGDL S +LQ G +G W W I RGI
Sbjct: 285 FLKPLKFQKIRFLGGKLGDSLANEYESSTVGDLWSVSLQELQRKLGNESGMWCWEIIRGI 344
Query: 169 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 227
EVQ + KS S K+F A+ A +WL EL+ RL E I
Sbjct: 345 DLTEVQPKAATKSMLSSKNFKP--AINKWADGAYWLRVSATELAARLNEQRESVPGIWPK 402
Query: 228 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 287
T+TL+ F+ + SR SK C Y + F + + L+EF GS
Sbjct: 403 TITLN---FRDINYVSR----SKQCAFPYSNNLSADYVFKITERLLKEFQNEGSKPDDGS 455
Query: 288 HYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
T+L ++ + + V SG I +F
Sbjct: 456 MTPA---TSLGLAFNGLERVASGQAGIQDFF 483
>gi|291244467|ref|XP_002742117.1| PREDICTED: DNA-directed DNA polymerase eta-like, partial
[Saccoglossus kowalevskii]
Length = 289
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 95/148 (64%), Gaps = 10/148 (6%)
Query: 20 SHILGLESKDGND---------SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKE 70
+ ++G + K+ ND + V +WL C + K LA G +IV E+R V ++
Sbjct: 143 TFVVGWDGKENNDPNEEPPLESQTSGVFQWLNNCHSIEH-KRLAIGAVIVEEMRKAVYQK 201
Query: 71 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 130
TEF CSAG++HNK+LAKLA G+NKP +QT +PF SV+ L +P+ K++ LGGKLG LQ
Sbjct: 202 TEFRCSAGVSHNKILAKLACGINKPNKQTVLPFESVEKLFKLIPVNKVRHLGGKLGQQLQ 261
Query: 131 NELGVTTVGDLLKFSEDKLQESYGFNTG 158
+ELG+ +GD+ KF+E +LQ G TG
Sbjct: 262 DELGMQYMGDICKFTEKELQIKLGDKTG 289
>gi|398405964|ref|XP_003854448.1| hypothetical protein MYCGRDRAFT_11773, partial [Zymoseptoria
tritici IPO323]
gi|339474331|gb|EGP89424.1| hypothetical protein MYCGRDRAFT_11773 [Zymoseptoria tritici IPO323]
Length = 479
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 126/265 (47%), Gaps = 17/265 (6%)
Query: 55 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 114
G ++ ELR V + +T SAGIA NKMLAKL +G KP QT + V L SL
Sbjct: 228 IGAGVIRELRHTVHSKLHYTASAGIASNKMLAKLGAGCKKPNNQTILRTRDVPEFLSSLK 287
Query: 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
KK++ LGG+LGT+++ VTTV DLL S ++Q G + GTW++N+ RG EV
Sbjct: 288 YKKIRGLGGQLGTAVEEAFNVTTVADLLPVSLKQMQTLLGADEGTWIYNVIRGREHSEVS 347
Query: 175 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS-DLEQNKRIAHTLTLHA 233
R LP+S S K+F A+ + HWL EL +R+ + D +R TL ++
Sbjct: 348 TRKLPQSMLSQKTFTP--AIANIEKASHWLRMFAAELYDRVVALDTPTLRRRPRTLAVN- 404
Query: 234 SAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 293
+ P R A I T + A L L S ++ + W
Sbjct: 405 -----------HHINGRFGPTRSRQATI--STGSTMSADLIYELASSKLREISAEAVSWP 451
Query: 294 ITALSVSASKIVPVLSGTCSIMKYF 318
AL V S V + + + SI +F
Sbjct: 452 CAALGVVLSNFVELDTQSLSITTFF 476
>gi|384246648|gb|EIE20137.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 772
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 106/204 (51%), Gaps = 12/204 (5%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
++ L+ G I LR V + FTCSAGIA NK+LAK+AS MNKP QQT VP +V +
Sbjct: 164 ERRLSIGANIACRLRGAVRDQLGFTCSAGIAANKLLAKVASAMNKPNQQTIVPPRAVDEM 223
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+ LP+KK++ GGKLG L +G T G + +L +G + RG S
Sbjct: 224 MRDLPLKKLRNFGGKLGAELA-AMGCVTAGQVSALPHGQLTARFGEERAAGIARAVRGYS 282
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E VQ + L KS + KSF A A + WL L +ELS RL D + R TL
Sbjct: 283 DEPVQVKELAKSMLAAKSF---NATSAPAELDRWLRILADELSHRLTEDGLTHSRAPRTL 339
Query: 230 TLHASAFKSSDSDSRKKFPSKSCP 253
+L +++ S+ D SK CP
Sbjct: 340 SL---SYRGSNGDR-----SKCCP 355
>gi|452842927|gb|EME44862.1| hypothetical protein DOTSEDRAFT_70800 [Dothistroma septosporum
NZE10]
Length = 628
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 11/237 (4%)
Query: 38 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 97
++W D D D ++ IV ++R ++ KE ++TCSAG++ NKMLAKL SG KP
Sbjct: 165 EKWSEEEDPDWDDVVMLIASEIVRDVRARIFKELKYTCSAGLSRNKMLAKLGSGHKKPNA 224
Query: 98 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 157
QT + +V+ L K++ LGGKLG + TV +LL S ++L++ G +T
Sbjct: 225 QTVIRNRAVQQFLSGFKFTKIRNLGGKLGDEVVAAFNTDTVSELLPISIEQLKKQLGDST 284
Query: 158 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 217
G WL+ + RG EV R KS S KSF ++ +V WL ++ RL
Sbjct: 285 GAWLYGVIRGEDDSEVNPRTQIKSMLSAKSFRP--SINSVDVASKWLRIFVADIFSRLVE 342
Query: 218 D-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 273
+ + +NKR T+ LH + +R SKS P+ G +E FNL +A L
Sbjct: 343 EGVLENKRRPKTINLH----HRQGAQTR----SKSAPIPLGKGITEEVLFNLAKALL 391
>gi|388583788|gb|EIM24089.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 584
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 159/336 (47%), Gaps = 23/336 (6%)
Query: 1 MLAETPPE-SLDEVDEE------ALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 53
L + PP+ +LD+V E A +++ S+ G+D + E + D +
Sbjct: 162 FLKQLPPDKTLDDVLPEPPIISFADVGNVIPTSSEKGSDGEIIADEEM---QTTWEDVAI 218
Query: 54 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 113
G +V E R + ++ +TCSAGI+HNK+LAKL S KP QT + +V L +
Sbjct: 219 QVGAQLVAEARKIMFEKIGYTCSAGISHNKILAKLCSAYKKPDDQTVLRRDAVDSFLGPM 278
Query: 114 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 173
+K++ LGGK G +L TV DL K ++Q +G W++N RGI+ +EV
Sbjct: 279 SFQKIRSLGGKFGEALAAHYDAATVSDLWKVPLGEMQRQFG-EESIWIYNTIRGINSDEV 337
Query: 174 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL-EQNKRIA--HTLT 230
+ R++ KS + KS P + TV V+HWL L ELS+RL E+ K+ ++
Sbjct: 338 KERVITKSMLASKSLRPP--INTVGEVRHWLKILSSELSQRLKEVRGEEGKKTMWPKSIV 395
Query: 231 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 290
L + S + FP + +G IQ+ L L+EF+ + H
Sbjct: 396 LSMNQVYQSSRSHQGAFPYNNS---FGPELIQKHAEKL----LKEFVRCDTKEMPDEHKL 448
Query: 291 GWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGS 326
G+ + L++S S + V +G I + K G+
Sbjct: 449 GYDVNKLALSFSGLATVEAGQRGIEGFLGQMTKNGN 484
>gi|268571285|ref|XP_002640994.1| C. briggsae CBR-POLH-1 protein [Caenorhabditis briggsae]
Length = 608
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 104/179 (58%), Gaps = 1/179 (0%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LL + V +R ++ ET+F CSAG+ +NKM+AKL +KP QQT +P+ + + +L
Sbjct: 188 LLLIAAITVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWRNCREILR 247
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+ PI ++ GGK+G +Q L +T +G++L+ L E++ + +L +A G+ E
Sbjct: 248 TTPIGDVRGFGGKMGNRIQEMLNITLMGEILELDIALLIETFP-DQHEYLRAVAEGLDDE 306
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 230
V+ R S K+FPG A++T ++ W+ L +EL++RL +D +NKR A L
Sbjct: 307 PVRPRKESSSIAVSKNFPGKMAIRTTGELKKWVGGLVKELAKRLGTDQAENKRTAENLV 365
>gi|241830533|ref|XP_002414817.1| DNA polymerase eta, putative [Ixodes scapularis]
gi|215509029|gb|EEC18482.1| DNA polymerase eta, putative [Ixodes scapularis]
Length = 727
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 130/285 (45%), Gaps = 72/285 (25%)
Query: 20 SHILGLESKDGNDSKA-TVKEWLCR-CDADHRDKLLACGVLIVTELRMQVLKETEFTCSA 77
+H++G + G S+ V EWL D D LLA G +V +R VL++T F CSA
Sbjct: 142 THVVGYPEERGVRSREEAVAEWLSTIVDPGGGDSLLARGCALVERIRAAVLEQTGFDCSA 201
Query: 78 GIAHNK-------------------------------MLAKLASGMNKPAQQTTVPFSSV 106
G+AHNK +LAKL G++KP QQT +P S+V
Sbjct: 202 GVAHNKVLAKLVCGLHKPRQQTVLPHSAVPTLFATLPVLAKLVCGLHKPRQQTVLPHSAV 261
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES-YGFNTGTWLWNIA 165
L +LP+ K++ LGGKLG ++ +L V S+D L S +G TG WL+ +A
Sbjct: 262 PTLFATLPVHKLRNLGGKLGEDVREKLQV---------SQDYLCLSVFGHRTGQWLYKLA 312
Query: 166 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
RG+ E V R LP+S G GK+F G AL + ++N R
Sbjct: 313 RGVDDEPVTCRKLPQSIGCGKNFTGSSALHSA----------------------DKNDRT 350
Query: 226 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLF 269
A LT+ + + SR SCP+ Y +I +D +
Sbjct: 351 AQLLTVGVTRSGHQGAISR------SCPMVAYCATRIAQDALAVL 389
>gi|225683428|gb|EEH21712.1| sister chromatid cohesion protein Eso1 [Paracoccidioides
brasiliensis Pb03]
Length = 681
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 132/280 (47%), Gaps = 22/280 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 239 DPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNR 298
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L +++ LGGKLG + G VGDLL+ ++L+ G +TGTWL+ I
Sbjct: 299 AIQHFLSGFRFTQIRMLGGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEI 358
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG +K+ + WL ++ RL + + +N
Sbjct: 359 IRGYEYSEVSMRTKIKSMLSTKSFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLEN 415
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
KR +T+H ++ + S+ P+ G F+L + L + + +
Sbjct: 416 KRRPKVVTIHHR--------TKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI 467
Query: 283 KTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
W LS++ S L+G S+ +F D
Sbjct: 468 ---------WPCANLSLNVSGFEDGLTGNRSLDSFFGRGD 498
>gi|378730434|gb|EHY56893.1| DNA polymerase eta subunit [Exophiala dermatitidis NIH/UT8656]
Length = 663
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 128/267 (47%), Gaps = 20/267 (7%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ G +V +R + ++TCSAGIA NKM+AKL +G KP QQT V +V+ L
Sbjct: 246 MNIGAEVVRGVRQTIYDRLKYTCSAGIARNKMMAKLGAGYKKPNQQTIVRNRAVQHFLSG 305
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
K++ LGGKLG + + G V +LL ++L+ G +TGTWL+ I RG E
Sbjct: 306 FKFTKIRNLGGKLGDHVVDTFGTDEVTELLAIPIEQLKARLGDDTGTWLYGIIRGEDNSE 365
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTL 231
V +R KS S KSF ++ TV WL ++ RL + + +NKR T+TL
Sbjct: 366 VNSRTQIKSMLSAKSFRP--SINTVEQANRWLRIFVADIYARLVEEGVTENKRRPKTITL 423
Query: 232 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
H + +R SK P+ G KI E+T LF+ + LG V +
Sbjct: 424 H----HRQGAQTR----SKQLPIPQGK-KIDENT--LFELA-KTLLGQVVVDGR-----A 466
Query: 292 WRITALSVSASKIVPVLSGTCSIMKYF 318
W LS+S ++G I +
Sbjct: 467 WPCANLSLSVGGFEDGVAGNKGIDTFL 493
>gi|429862856|gb|ELA37463.1| sister chromatid cohesion protein eso1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 656
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV ++R QVL++ +TCSAG+A NK+L+KL SG KP QQT +
Sbjct: 227 DPDWDDVAILIGSEIVRDVRRQVLEKLFYTCSAGVAKNKLLSKLGSGHKKPNQQTVIRNR 286
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L KM+ LGGKLG ++ V +LL D+++ G TGTW++N
Sbjct: 287 AVDQFLSGFKFTKMRNLGGKLGENVVTTFNTDAVSELLPILLDQMKAKLGHETGTWVYNT 346
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV +R KS S KSF + T WL ++ RL + + +NK
Sbjct: 347 IRGIDNSEVNSRTQIKSMLSAKSFRP--YINTPEKAVRWLRIFVADIFARLVEEGVLENK 404
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 405 RRPRTINLH 413
>gi|328768045|gb|EGF78092.1| hypothetical protein BATDEDRAFT_26797 [Batrachochytrium
dendrobatidis JAM81]
Length = 604
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 8/205 (3%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G + LR Q+ E +TCS GIAH K+LAKL S +NKP +QT + V
Sbjct: 217 DLQLYLGSRLSASLRKQIFDELGYTCSTGIAHGKILAKLVSSINKPNKQTVLQIEKVPDF 276
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+ ++ + K+ +GGK G + VT +L +S D+L + G+ GTWL+N RGI
Sbjct: 277 MKTIKLSKINGMGGKFGAEIMKTFQVTMAHELWVYSADELVKQLGYEHGTWLYNACRGID 336
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+++Q + +S + K+ + + ++WL L EL R+ ++ E N+R L
Sbjct: 337 FQKIQGQTKSQSMTACKNLTP--NIHSTDDARYWLGILASELYTRVNTEFETNQRWPKLL 394
Query: 230 TLHASAFKSSDSDSRKKFPSKSCPL 254
LH F++ + + K SKSCP
Sbjct: 395 VLH---FRNPNCPADK---SKSCPF 413
>gi|392574155|gb|EIW67292.1| hypothetical protein TREMEDRAFT_12962, partial [Tremella
mesenterica DSM 1558]
Length = 645
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 103/193 (53%), Gaps = 13/193 (6%)
Query: 23 LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 82
LG+E DG S+ +W D L G I++ELR +V K +TCSAGIAHN
Sbjct: 198 LGIEEPDG--SQEPEGKW--------EDWALCIGAEIMSELRAEVYKRLHYTCSAGIAHN 247
Query: 83 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 142
K +AKL S KP QT + ++ L ++ ++ LGGKLG ++ E G TVGD+L
Sbjct: 248 KAMAKLCSAWKKPNNQTVLRIAATPAFLRNMDFTDIRFLGGKLGNAIATEYGAKTVGDML 307
Query: 143 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 202
D+LQ +G W++NI RGI EV+ R+ KS + K+ A+ T A H
Sbjct: 308 TVPLDELQRRFG-EESVWVYNIIRGIDHTEVKERVTTKSMLASKN--TRPAVTTPAQGLH 364
Query: 203 WLNQLCEELSERL 215
W+ L EL+ RL
Sbjct: 365 WIQVLSGELNVRL 377
>gi|449017709|dbj|BAM81111.1| similar to DNA-damage-inducible protein P [Cyanidioschyzon merolae
strain 10D]
Length = 516
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 123/270 (45%), Gaps = 16/270 (5%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
V +V +R +L E +TCSAG+A NKMLAK AS NKP + T +P+S +L +P+
Sbjct: 160 AVRLVQRMRDAILDELRYTCSAGVACNKMLAKFASSTNKPNKLTAIPWSETNSILARIPL 219
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+++ LGGK G LQ T+ DL + S LQ +Y T WL+ +ARG V+
Sbjct: 220 SRVRGLGGKFGAELQRNFKAETLADLSQLSMAALQAAYEPCTAEWLFWLARGYDPSRVEP 279
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
R P+S + KSF + T + L L L +R+ D + R TL + ++
Sbjct: 280 RDRPRSLLAAKSFA---PVDTWQDARRILFLLATRLEQRIERDTSMHHRRPRTLCVSFTS 336
Query: 236 FKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 295
++ R S+S P +ED G + L S SG+R
Sbjct: 337 AQAGLQGQRHHHASRSGPF---PTCAKEDAAASIAEGAEKLLRSI--------RSGFRFP 385
Query: 296 A--LSVSASKIVPVLSGTCSIMKYFNGPDK 323
+ A+ P+ SG SI Y P K
Sbjct: 386 CKRFMLEATNFQPIASGAYSIRSYMGKPGK 415
>gi|295666590|ref|XP_002793845.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277498|gb|EEH33064.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 664
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 20/279 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 238 DPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNR 297
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L +++ LGGKLG + G VGDLL+ ++L+ G +TGTWL+ I
Sbjct: 298 AIQHFLSGFRFTQIRMLGGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEI 357
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++K+ + WL ++ RL + + +NK
Sbjct: 358 IRGYEYSEVSTRTKIKSMLSTKSFRP--SIKSSGQAEKWLRIFVADIYGRLLEEGVLENK 415
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
R +T+H ++ + S+ P+ G F+L + L + + +
Sbjct: 416 RRPKVVTIHHR--------TKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI- 466
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
W LS++ S L+G S+ +F D
Sbjct: 467 --------WPCANLSLNVSGFEDGLTGNRSLDSFFGRGD 497
>gi|226287048|gb|EEH42561.1| DNA polymerase eta [Paracoccidioides brasiliensis Pb18]
Length = 675
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 131/280 (46%), Gaps = 22/280 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + + ++TCSA IA NKM+AKL S NKP +QT V
Sbjct: 235 DPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAAIARNKMMAKLGSSCNKPNKQTIVRNR 294
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L +++ LGGKLG + G VGDLL+ ++L+ G +TGTWL+ I
Sbjct: 295 AIQHFLSGFRFTQIRMLGGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEI 354
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG +K+ + WL ++ RL + + +N
Sbjct: 355 IRGYEYSEVSMRTKIKSMLSTKSFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLEN 411
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
KR +T+H ++ + S+ P+ G F+L + L + + +
Sbjct: 412 KRRPKVVTIHHR--------TKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI 463
Query: 283 KTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
W LS++ S L+G S+ +F D
Sbjct: 464 ---------WPCANLSLNVSGFEDGLTGNRSLDSFFGRGD 494
>gi|212534508|ref|XP_002147410.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
gi|210069809|gb|EEA23899.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
Length = 673
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G I +R + + +TCSAGIA NKM++KL S NKP +QT +
Sbjct: 246 DPDWDDVAMLIGAEITRSIRAVIWDKLSYTCSAGIARNKMMSKLGSAQNKPNKQTIIRNR 305
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + E G V +LL S D+ + +T W++NI
Sbjct: 306 AIQKFLGGFQFTKIRWLGGKLGERISAEFGTEEVKELLNVSLDQFKAKLDDDTAVWVYNI 365
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG+ EV R KS S KSF ++ + + WL +L RL D L +NK
Sbjct: 366 IRGVDDSEVNPRTQIKSMLSAKSFRP--SINSADQARKWLRIFAADLYNRLVEDGLLENK 423
Query: 224 RIAHTLTLH 232
R TL+LH
Sbjct: 424 RRPTTLSLH 432
>gi|320169035|gb|EFW45934.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 893
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 119/237 (50%), Gaps = 20/237 (8%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LL I E+R VL + +F CSAGIA NKMLAKLAS +NKP +QTTV + L+
Sbjct: 460 LLWFAAQITLEIRNAVLNQLDFHCSAGIAENKMLAKLASSLNKPNKQTTVTSTGAIALMR 519
Query: 112 SLPIKKMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
SLP++K++ LGGKLG + LG + G++ F +L G +TG +++ RG
Sbjct: 520 SLPLRKIRGLGGKLGREVCKRLGDIELAGEVWSFPLSRLVSLLGSDTGPFVYAAVRGRDS 579
Query: 171 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 230
V R KS + KSF ++T S+ WL L EL R+ +D KR+ TL
Sbjct: 580 SAVVPRSTTKSMLAAKSFSP--VVETYQSLLDWLRVLASELVLRMRAD----KRVPRTLK 633
Query: 231 LHASAFKSSDSDSRK-------KFPSKSCPL---RYGTAKIQEDTFNLFQAGLREFL 277
+ F + + R + S+SCPL R+ + + L + RE L
Sbjct: 634 VQ---FHRASPNGRANSHAWWLEGKSRSCPLPHDRFNAELLASTAYGLLPSDAREIL 687
>gi|308480033|ref|XP_003102224.1| CRE-POLH-1 protein [Caenorhabditis remanei]
gi|308262150|gb|EFP06103.1| CRE-POLH-1 protein [Caenorhabditis remanei]
Length = 602
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 100/179 (55%), Gaps = 1/179 (0%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LL V +R ++ ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+ +L
Sbjct: 188 LLLIAACTVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWKYVREILR 247
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
PI ++ GGK G +Q L ++ +G++L+ L E++ + +L +A G+ E
Sbjct: 248 LTPIGDVRGFGGKFGNRVQEMLNISLMGEILEIEWHLLIEAFP-DQHEYLRAVAEGLDDE 306
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 230
V+ R S K+FPG A++T ++ W+ L +EL++RL D +NKR A L
Sbjct: 307 PVRPRRESSSIAVSKNFPGKSAIRTTREMRKWVEGLVKELAKRLVVDQVENKRTAENLV 365
>gi|310794025|gb|EFQ29486.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 637
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 7/232 (3%)
Query: 2 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 61
LA PP D+ E+ + + L+ + D+ + E D D D + G IV
Sbjct: 188 LANPPP--YDDPTEDLPRPSVAALDWQ--ADALVDLDEEQESVDPDWDDVAILIGSEIVR 243
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+R Q+L+ ++TCSAGIA NK+L+KL SG KP QQT + +V L K++ L
Sbjct: 244 HVRGQILERLQYTCSAGIAKNKLLSKLGSGHKKPNQQTVIRNRAVTHFLSGFKFTKIRNL 303
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
GGKLG ++ + V +LL D+++ G +TG W+++ RGI EV +R KS
Sbjct: 304 GGKLGENVVSTFNTDAVRELLDIPLDQMKAKLGHDTGNWVYDTIRGIDTSEVNSRTQIKS 363
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 232
S KSF + T WL ++ RL + + +NKR T+ LH
Sbjct: 364 MLSAKSFRP--YINTPEQAIRWLRIFAADIFARLIEEGVLENKRRPRTINLH 413
>gi|111308137|gb|AAI21715.1| Zgc:136881 [Danio rerio]
Length = 294
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 12/162 (7%)
Query: 9 SLDEVDEEALK-SHILGLESKDGN-------DSKATVKEWL----CRCDADHRDKLLACG 56
S+ ++ + LK +HI G ++ N A +++WL ++ D LA G
Sbjct: 133 SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSSSTESSPADLRLAVG 192
Query: 57 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 116
LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT +P SSV L +LPI
Sbjct: 193 ALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLSSVPQLFSTLPIS 252
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 158
K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG
Sbjct: 253 KIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTG 294
>gi|406861269|gb|EKD14324.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 717
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 114/237 (48%), Gaps = 15/237 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G I+ ++R V ++TCS G+A NKMLAKL S KP QQT +
Sbjct: 230 DPDWDDVAILIGSEIIRDVRAAVRTHLKYTCSGGVAQNKMLAKLGSAHKKPNQQTIIRNR 289
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ GGK+G S+ TV DLL D+L++ G +TGTW++ I
Sbjct: 290 AIQQFLSEFKFTKIRGFGGKMGDSITAAFNTDTVQDLLAVPIDQLKQKLGDDTGTWVYEI 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV +R KS S KSF ++ T WL ++ RL + + +NK
Sbjct: 350 IRGKESSEVNSRTAIKSMLSAKSFRP--SINTAEQANRWLRIFAADIYSRLVEEGVLENK 407
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSF 280
R T+ LH S + S+S P+ G KI D LF+ R LG
Sbjct: 408 RRPKTINLHHR--------SGGQTKSRSSPISLGK-KI--DEVGLFELA-RSLLGQL 452
>gi|407921870|gb|EKG15007.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 591
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 99/181 (54%), Gaps = 4/181 (2%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ G IV ++R ++ +E ++TCSAG+A NKMLAKL SG KP QQT + +V+ L
Sbjct: 108 ILIGSEIVRDIRAKIFEELKYTCSAGVARNKMLAKLGSGHQKPNQQTVIRNRAVQNFLSE 167
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
+ K++ LGGKLG + TV DLL ++LQ G TG WL++I RG E
Sbjct: 168 MKFTKIRNLGGKLGDEVVAMFNTETVKDLLDVPLEQLQR-LGDGTGIWLYDIIRGNDTSE 226
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTL 231
V +RL KS S KSF ++ T WL ++ R + + +NKR T+TL
Sbjct: 227 VNSRLKIKSMLSAKSFRP--SINTFEQGIRWLRIFSADIFSRCVEEGVLENKRRPKTITL 284
Query: 232 H 232
H
Sbjct: 285 H 285
>gi|336264622|ref|XP_003347087.1| hypothetical protein SMAC_05386 [Sordaria macrospora k-hell]
gi|380093781|emb|CCC08745.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 672
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV ++R+ + + +TCSAG+A NK+L+KL S KP QQT +
Sbjct: 231 DPDWDDVAILIGSEIVRKVRIAIKDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVIRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV+ L KM+ LGGKLG + TV DLL S ++L+ G +TG W++N
Sbjct: 291 SVQHFLSDFKFTKMRNLGGKLGEQISQIYHTDTVKDLLGVSVEQLKSKLGDDTGVWVYNT 350
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV R+ KS S KSF ++ T WL ++ RL + + +NK
Sbjct: 351 VRGIDNSEVNPRVQIKSMLSAKSFRP--SIATFEQGVRWLRIFAADIFSRLVEEGVLENK 408
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 409 RRPKTINLH 417
>gi|358393445|gb|EHK42846.1| hypothetical protein TRIATDRAFT_33108 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 128/282 (45%), Gaps = 22/282 (7%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D D D + G IV +R QV ++ +TCSAGIA+NK+++KL S KP +QT V
Sbjct: 224 VDPDWDDVAILIGSEIVRRVRAQVREKLGYTCSAGIANNKLVSKLGSAFKKPNEQTVVRN 283
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+V L + + KM+ LGGKLG + + G ++ +L ++ + G T W +N
Sbjct: 284 RAVMLFLTEIKVTKMRNLGGKLGDQVVSTFGTESIKELRDIPLEQFKAKLGEETAIWFYN 343
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRAL-KTVASVQHWLNQLCEELSERLCSD-LEQ 221
RGI EV +R KS S KSF R L K+ WL ++ RL + + +
Sbjct: 344 TIRGIDHSEVNSRTQIKSMLSAKSF---RPLIKSSEQATKWLRIFAGDIYSRLVEEGILE 400
Query: 222 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG 281
+KR T+ LH + S+ CP+ G ++ F L + L + + G
Sbjct: 401 HKRWPRTINLHHRHAGQTR--------SRGCPIPTGKPLDEQALFILCKELLNQIVAEGG 452
Query: 282 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDK 323
W T LS+S S + G I +F D+
Sbjct: 453 ---------AWPCTNLSLSVSGFEEGVKGNMGIGAFFKKRDE 485
>gi|296419283|ref|XP_002839244.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635259|emb|CAZ83435.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 44 CDA--DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
CD D D + IV E+R V KE +TCSAGIA NK+LAKL SG KP QQT V
Sbjct: 206 CDEQLDWDDVGMGVAAEIVEEVRTSVRKELGYTCSAGIAQNKLLAKLGSGYKKPNQQTIV 265
Query: 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
+ + L++ K++ LGGKLG + E G + LL LQ +T TW+
Sbjct: 266 RIRAAQRFLNTFKFTKLRNLGGKLGERISEEFGTEELSSLLDTPLQALQLKLNDDTATWV 325
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV-QHWLNQLCEELSERLCSD-L 219
+NI RGI EV R L KS S KSF R T A WL ++ R+ + +
Sbjct: 326 YNIIRGIDKSEVNPRTLIKSMLSAKSF---RPYITTADAGSKWLTIFISDIYSRMEEEGV 382
Query: 220 EQNKRIAHTLTLH 232
+ KR T+TL+
Sbjct: 383 MEGKRRPKTMTLN 395
>gi|367021894|ref|XP_003660232.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
gi|347007499|gb|AEO54987.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
Length = 577
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 96/190 (50%), Gaps = 5/190 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D +V +R + + +TC+AGIA NK+L+KL S KP QQT +
Sbjct: 138 DPDWDDVAFCVASEVVRNVRAAIRDKLRYTCAAGIARNKLLSKLGSAHKKPNQQTVIRNR 197
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K + LGGKLG + E G +V +LL S ++L+ G TG W++N
Sbjct: 198 AVRQFLSGFKFTKFRNLGGKLGEQVTREFGSESVPELLSVSVEQLKLKLGDETGVWVYNT 257
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RGI EV R KS S KSF PG + TV WL ++ RL + + +N
Sbjct: 258 LRGIDTSEVNPRTQIKSMFSAKSFRPG---ISTVEQATKWLRIFVADIFARLVEEGVLEN 314
Query: 223 KRIAHTLTLH 232
KR T+ LH
Sbjct: 315 KRRPRTINLH 324
>gi|346977255|gb|EGY20707.1| sister chromatid cohesion protein Eso1 [Verticillium dahliae
VdLs.17]
Length = 660
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G I+ +R ++ + +TCSAGIA+NKML+KL S KP QQT +
Sbjct: 228 DPDWDDVAILIGSEIIRGVRARIHEVLHYTCSAGIANNKMLSKLGSAHKKPNQQTVIRNR 287
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG ++ N TV DLL D+++ G TG W++N
Sbjct: 288 AIQQFLSDFKFTKIRNLGGKLGDTIVNTFNTDTVKDLLPTPLDQMKARLGDETGIWVYNT 347
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV +R KS S KSF ++ T WL ++ RL + + +NK
Sbjct: 348 IRGIDQSEVNSRTQIKSMLSAKSFRP--SIHTPDQGNRWLRIFVADIFSRLVEEGVLENK 405
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 406 RRPKTINLH 414
>gi|302419901|ref|XP_003007781.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
gi|261353432|gb|EEY15860.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
Length = 631
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G I+ +R ++ + +TCSAGIA+NKML+KL S KP QQT +
Sbjct: 199 DPDWDDVAILIGSEIIRGVRARIHEVLHYTCSAGIANNKMLSKLGSAHKKPNQQTVIRNR 258
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG ++ N TV DLL D+++ G TG W++N
Sbjct: 259 AVQQFLSDFKFTKIRNLGGKLGDTIVNTFNTDTVKDLLPTPLDQMKARLGDETGIWVYNT 318
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV +R KS S KSF ++ T WL ++ RL + + +NK
Sbjct: 319 IRGIDQSEVNSRTQIKSMLSAKSFRP--SIHTPDQGNRWLRIFVADIFSRLVEEGVLENK 376
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 377 RRPKTINLH 385
>gi|402224670|gb|EJU04732.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 604
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 120/230 (52%), Gaps = 11/230 (4%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D LA G +V ++R +V K+ +T SAGIA NK +AKL + KP QT + +++
Sbjct: 227 DVALALGAEMVHKVRQEVHKQLGYTTSAGIARNKTMAKLCASCKKPFGQTVLRDAAIPLY 286
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L+ +P KK++ LGGKLG +L + T+GDLL S++ +Q+ +G W+++I RG
Sbjct: 287 LNPMPFKKIRFLGGKLGDALASAYDAKTIGDLLSVSKEDMQQQFG-EESYWVYDILRGRD 345
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHT 228
EV+ R KS + K+ A+KT + QHWL L ELS RL + + + T
Sbjct: 346 YAEVKERTGVKSMMASKNVRP--AIKTFSDGQHWLRVLSAELSLRLEEARDLSPAVWPKT 403
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 278
L LH K R S+ CP + A E L + LRE +G
Sbjct: 404 LVLH---IKQGFDAPR----SRQCPFPFTNALSDEYIARLGERLLRELVG 446
>gi|452822562|gb|EME29580.1| DNA polymerase eta subunit [Galdieria sulphuraria]
Length = 546
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 51 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
++L+ G I ++R + + +T SAGIA NK+LAKL S +NKP +QT + +V LL
Sbjct: 203 QILSIGCAIAAKIRYAIYSQFNYTSSAGIAENKLLAKLGSSLNKPNRQTLISPKAVPFLL 262
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
++LP+KK++ LGGKLGT ++ T + + +K E G W++N+ RGI
Sbjct: 263 ENLPLKKLRGLGGKLGTRIEERTNAKTAKEAQNVTLEKWNEIVGRENAEWIYNLVRGIDY 322
Query: 171 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 230
V AR + KS + KSF +A + ++ W+ L EL ERL D N R
Sbjct: 323 SPVNARGITKSILAAKSF---KAECSWEGMEKWIKILAYELCERLRKDETMNSRRPINFI 379
Query: 231 LHASAFKSSDSDSRKKFPS 249
+H S+ S S FP+
Sbjct: 380 VHYSSVGSVSSSKSIPFPN 398
>gi|85111821|ref|XP_964120.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
gi|28925887|gb|EAA34884.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
Length = 672
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV ++R+ + + +TCSAG+A NK+L+KL S KP QQT +
Sbjct: 231 DPDWDDVAILIGSEIVRKVRIAIKDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVLRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
S++ L KM+ LGGKLG + TV DLL S ++L+ G +TG W++N
Sbjct: 291 SIQHFLSDFKFTKMRNLGGKLGEQISQMFHTDTVKDLLSASVEQLKSKLGDDTGVWVYNT 350
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV R+ KS S KSF ++ + WL ++ RL + + +NK
Sbjct: 351 VRGIDTSEVNPRVQIKSMLSAKSFRP--SITSFEQAVRWLRIFAADIFSRLVEEGVLENK 408
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 409 RRPKTINLH 417
>gi|239612109|gb|EEQ89096.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ER-3]
Length = 756
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 306 DPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNR 365
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L +++ LGGKLG + G VG LL ++L+ G +TGTWL+ +
Sbjct: 366 AVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYEL 425
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG +++ + WL ++ RL + + +N
Sbjct: 426 LRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLEN 482
Query: 223 KRIAHTLTLH 232
KR +T+H
Sbjct: 483 KRRPKVITIH 492
>gi|261202176|ref|XP_002628302.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
gi|239590399|gb|EEQ72980.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
Length = 757
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 307 DPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNR 366
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L +++ LGGKLG + G VG LL ++L+ G +TGTWL+ +
Sbjct: 367 AVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYEL 426
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG +++ + WL ++ RL + + +N
Sbjct: 427 LRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLEN 483
Query: 223 KRIAHTLTLH 232
KR +T+H
Sbjct: 484 KRRPKVITIH 493
>gi|115400311|ref|XP_001215744.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191410|gb|EAU33110.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1077
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G +V LR + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 662 DPDWDDIAMLVGSEVVRSLRTALWNKLQYTCSAGIARNKMMAKLGSSSNKPNKQTIVRNR 721
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG + G VGDLL+ ++L+ +T WL+ I
Sbjct: 722 AVQNFLGGFKFTKIRMLGGKLGDQVTALFGTEQVGDLLQVPLEQLRAKLDDDTALWLYGI 781
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ +V + WL ++ RL D + +N+
Sbjct: 782 IRGEDRSEVNPRTQIKSMLSAKSFRP--SINSVEQAEKWLRIFAADIYGRLVEDGVLENR 839
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 840 RRPRTIALH 848
>gi|121713084|ref|XP_001274153.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
gi|119402306|gb|EAW12727.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
Length = 674
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V + ++TCS G+A NKM+AKL S NKP +QT V
Sbjct: 251 DPDWDDIAMLIGSEIVRSVRKFVWDKLKYTCSGGVARNKMMAKLGSACNKPNKQTIVRNR 310
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG + G V DLLK S ++L+ +T +WL+ I
Sbjct: 311 AVQNFLGGYKFTKIRMLGGKLGDQITASFGTEQVSDLLKVSHEQLRAKLDDDTASWLYGI 370
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ +V + WL ++ RL + + +N+
Sbjct: 371 IRGEDKSEVNPRTQIKSMLSAKSFRP--SINSVDQAEKWLRIFAADIYGRLVEEGVLENR 428
Query: 224 RIAHTLTLH 232
R T++LH
Sbjct: 429 RRPRTVSLH 437
>gi|336463579|gb|EGO51819.1| hypothetical protein NEUTE1DRAFT_149518 [Neurospora tetrasperma
FGSC 2508]
Length = 672
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV ++R+ + + +TCSAG+A NK+L+KL S KP QQT +
Sbjct: 231 DPDWDDVAILIGSEIVRKVRIAIKDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVLRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
S++ L KM+ LGGKLG + TV DLL S ++L+ G +TG W++N
Sbjct: 291 SIQHFLSDFKFTKMRNLGGKLGEQISQMFHTDTVKDLLSASVEQLKSKLGDDTGVWVYNT 350
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV R+ KS S KSF ++ + WL ++ RL + + +NK
Sbjct: 351 VRGIDTSEVNPRVHIKSMLSAKSFRP--SITSFEQAVRWLRIFAADIFSRLVEEGVLENK 408
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 409 RRPKTINLH 417
>gi|380490518|emb|CCF35959.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 640
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 129/275 (46%), Gaps = 20/275 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R Q+ + ++TCSAGIA NK+L+KL SG KP QQT +
Sbjct: 227 DPDWDDVAILIGSEIVRHVRGQIFERLQYTCSAGIAKNKLLSKLGSGHKKPNQQTVIRNR 286
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L K++ LGGKLG ++ + V +LL ++++ G +TG+W+ N
Sbjct: 287 AVSHFLSGFKFTKIRNLGGKLGENVVSTFNTDAVSELLAIPLEQMKAKLGHDTGSWVHNT 346
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV +R KS S KSF + T WL ++ RL + + +NK
Sbjct: 347 IRGIDLSEVNSRTQIKSMLSAKSFRP--YINTPEQAVRWLRIFAADIFARLVEEGVLENK 404
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
R T+ LH D + K S+ P+ G ++ F L ++ + + +
Sbjct: 405 RRPRTINLHHR------HDGQTK--SRQGPIPQGKTLDEQALFELAKSLMNQIM------ 450
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
T+GS W LS+S ++G I +
Sbjct: 451 TEGSI---WPCANLSLSVGGFEDGVTGNMGIGAFL 482
>gi|367041902|ref|XP_003651331.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
gi|346998593|gb|AEO64995.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
Length = 642
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 22/276 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D IV +R + + +TC+AGIA NK+L+KL S KP QQT +
Sbjct: 205 DPDWDDVAFLVASEIVRNIRAAIRDKLRYTCAAGIARNKLLSKLGSAHRKPNQQTVIRNR 264
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K + LGGKLG + +V +LL S ++L+ G TGTW++N
Sbjct: 265 AVRKFLSGFKFTKFRNLGGKLGEHVSQVFNTESVQELLSVSLEQLKLRLGDETGTWVYNT 324
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RGI EV +R KS S KSF PG + TV WL ++ RL + + ++
Sbjct: 325 LRGIDTSEVNSRTQIKSMLSAKSFRPG---INTVEQATRWLKIFAADIFARLVEEGVLEH 381
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
KR T+ LH S +R S+ P+ G + E F L ++ L + +
Sbjct: 382 KRRPKTINLH----HRHGSQTR----SRQSPIPQGRSLDAETLFRLAKSLLHQIV----- 428
Query: 283 KTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
Q H W + LS+S +SG I +
Sbjct: 429 --QEGHV--WPCSNLSLSVGGFEDGISGNMGIAGFL 460
>gi|350297199|gb|EGZ78176.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 672
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV ++R+ + + +TCSAG+A NK+L+KL S KP QQT +
Sbjct: 231 DPDWDDVAILIGSEIVRKVRIAIEDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVLRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
S++ L KM+ LGGKLG + TV DLL S ++L+ G +TG W++N
Sbjct: 291 SIQHFLSDFKFTKMRNLGGKLGEQISQMYHTDTVKDLLSASVEQLKSKLGDDTGVWVYNT 350
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV R+ KS S KSF ++ + WL ++ RL + + +NK
Sbjct: 351 VRGIDTSEVNPRVQIKSMLSAKSFRP--SITSFEQAVRWLRIFAADIFSRLVEEGVLENK 408
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 409 RRPKTINLH 417
>gi|327352728|gb|EGE81585.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ATCC
18188]
Length = 549
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 251 DPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNR 310
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L +++ LGGKLG + G VG LL ++L+ G +TGTWL+ +
Sbjct: 311 AVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYEL 370
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG +++ + WL ++ RL + + +N
Sbjct: 371 LRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLEN 427
Query: 223 KRIAHTLTLH 232
KR +T+H
Sbjct: 428 KRRPKVITIH 437
>gi|358369617|dbj|GAA86231.1| sister chromatid cohesion protein [Aspergillus kawachii IFO 4308]
Length = 670
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V ++TCSAG+A NKM+AKL S NKP +QT V
Sbjct: 250 DPDWDDIAILIGSEIVRSVRAAVWDRLQYTCSAGVAKNKMMAKLGSACNKPNKQTIVRNR 309
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG + G V DLLK S ++ + +T TWL+ I
Sbjct: 310 AVQRFLSGYKFTKIRMLGGKLGDQVTAMFGTEQVSDLLKVSLEQFRAKLDDDTATWLYGI 369
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV +R KS S KSF ++ +V WL+ ++ RL D + ++K
Sbjct: 370 IRGEDKSEVNSRTQIKSMLSAKSFRP--SINSVDQADKWLSIFAADIFGRLVEDGVLEHK 427
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 428 RRPKTVALH 436
>gi|296817667|ref|XP_002849170.1| DNA polymerase eta [Arthroderma otae CBS 113480]
gi|238839623|gb|EEQ29285.1| DNA polymerase eta [Arthroderma otae CBS 113480]
Length = 646
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D + D ++ G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 246 DPEWDDIVMLVGSEIVKSIRAAVWDQLKYTCSGGIARNKMIAKLGSACNKPNRQTIVRNR 305
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + +E + DLL D+L+ +TGTWL+ I
Sbjct: 306 AIQQFLSGYKFTKIRSLGGKLGKRVASEFETEKIRDLLNIPLDRLKNKLDDDTGTWLYQI 365
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF P+ L + + W+ E+ RL + + +NK
Sbjct: 366 IRGEDDSEVTPRTEIKSMISAKSF-NPK-LNALDQAERWMRIFVTEIYGRLIDEGVLENK 423
Query: 224 RIAHTLTLH 232
R +T+H
Sbjct: 424 RRPKMITVH 432
>gi|302668344|ref|XP_003025744.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
gi|291189871|gb|EFE45133.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
Length = 645
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D + D ++ G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 247 DPEWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNR 306
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + +E + DLL D+L+ +TG WL+ I
Sbjct: 307 AIQQFLSGYKFTKIRSLGGKLGKKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQI 366
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF P+ L ++ + W+ EL RL + + +NK
Sbjct: 367 IRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEKWMRIFVAELYGRLVDEGVLENK 424
Query: 224 RIAHTLTLH 232
R +T+H
Sbjct: 425 RRPKMITVH 433
>gi|440634992|gb|ELR04911.1| hypothetical protein GMDG_00170 [Geomyces destructans 20631-21]
Length = 641
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 3/181 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ G IV ++R V ++ ++TCS GIAHNKML+KL S KP QQT + +++ L
Sbjct: 235 ILLGSEIVRDVRAAVSEQLKYTCSGGIAHNKMLSKLGSAHRKPNQQTVIRNRAIQQFLSD 294
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
K++ LGGKLGT + + TV LL+ ++L++ G TG+W++ RGI E
Sbjct: 295 FKFTKIRNLGGKLGTQIVDTFETDTVSGLLEVPVERLKQKLGDETGSWVYQTIRGIDQSE 354
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTL 231
V +R KS S KSF ++ + WL ++ RL + + +NKR T+ L
Sbjct: 355 VNSRTQIKSMLSAKSFQP--SINSREQASRWLRIFVGDIYARLVEEGVLENKRRPKTINL 412
Query: 232 H 232
H
Sbjct: 413 H 413
>gi|116193781|ref|XP_001222703.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
gi|88182521|gb|EAQ89989.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
Length = 661
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D IV +R+ + + +TC+AGIA NK+L+KL S KP QQT +
Sbjct: 220 DPDWDDVAFLVASEIVRNIRVAIRDKLRYTCAAGIAKNKLLSKLGSAHKKPNQQTVIRNR 279
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K + LGGKLG + +V +LL S D+L+ +G TG W++N
Sbjct: 280 AVRQFLSGFKFTKFRNLGGKLGEQVSQTFKTESVQELLAVSIDQLKSKFGAETGAWVYNT 339
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV +R KS S KSF ++ TV WL ++ RL + + +NK
Sbjct: 340 LRGYDTSEVNSRTQIKSMLSAKSFRP--SINTVDQAMKWLRIFAADIFARLVDEGVLENK 397
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 398 RRPKTINLH 406
>gi|347837334|emb|CCD51906.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 668
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + ++ ++TCSAG+A NKML+KL S KP QQT +
Sbjct: 230 DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQNKMLSKLGSAHKKPNQQTVIRNR 289
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGK G + V DLL ++L++ G TGTW++N+
Sbjct: 290 AIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLVPVEQLKQKLGEETGTWVYNV 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI +V +R KS S KSF ++ T WL ++ RL + + +NK
Sbjct: 350 IRGIDVSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWLRIFAADIQSRLVEEGVLENK 407
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 408 RRPKTINLH 416
>gi|154309314|ref|XP_001553991.1| hypothetical protein BC1G_07551 [Botryotinia fuckeliana B05.10]
Length = 668
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + ++ ++TCSAG+A NKML+KL S KP QQT +
Sbjct: 230 DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQNKMLSKLGSAHKKPNQQTVIRNR 289
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGK G + V DLL ++L++ G TGTW++N+
Sbjct: 290 AIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLVPVEQLKQKLGEETGTWVYNV 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI +V +R KS S KSF ++ T WL ++ RL + + +NK
Sbjct: 350 IRGIDVSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWLRIFAADIQSRLVEEGVLENK 407
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 408 RRPKTINLH 416
>gi|145237696|ref|XP_001391495.1| DNA polymerase eta [Aspergillus niger CBS 513.88]
gi|134075969|emb|CAK48163.1| unnamed protein product [Aspergillus niger]
gi|350635582|gb|EHA23943.1| hypothetical protein ASPNIDRAFT_48454 [Aspergillus niger ATCC 1015]
Length = 670
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V ++TCSAG+A NKM+AKL S NKP +QT V
Sbjct: 250 DPDWDDIAMLIGSEIVRSVRAAVWDRLQYTCSAGVAKNKMMAKLGSSCNKPNKQTIVRNR 309
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG + G V DL+K S ++ + +T TWL+ I
Sbjct: 310 AVQRFLGGYKFTKIRMLGGKLGDQVTAMFGTEQVSDLIKVSLEQFRAKLDDDTATWLYGI 369
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV +R KS S KSF ++ +V WL+ ++ RL D + ++K
Sbjct: 370 IRGEDKSEVNSRTQIKSMLSAKSFRP--SINSVDQADKWLSIFAADIFGRLVEDGVLEHK 427
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 428 RRPKTVALH 436
>gi|302501757|ref|XP_003012870.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
gi|291176431|gb|EFE32230.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
Length = 644
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D + D ++ G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 246 DPEWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNR 305
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + +E + DLL D+L+ +TG WL+ I
Sbjct: 306 AIQQFLSGYKFTKIRSLGGKLGKRISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQI 365
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF P+ L ++ + W+ E+ RL + + +NK
Sbjct: 366 IRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENK 423
Query: 224 RIAHTLTLH 232
R +T+H
Sbjct: 424 RRPKMITVH 432
>gi|449675574|ref|XP_004208438.1| PREDICTED: DNA polymerase eta-like, partial [Hydra magnipapillata]
Length = 333
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA G I ++R +V ++ FTCSAGI NKMLAK+ +G +KP QQT V +V + S
Sbjct: 187 LAIGATIADKMRKEVKEKLGFTCSAGIGQNKMLAKIVAGFHKPDQQTLVLPDNVAEMFQS 246
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
++K++ LGGKLG L V + DLLK S L++ G +G ++ + RGI E
Sbjct: 247 TKMRKIRSLGGKLGKQLAETFNVEYMSDLLKISSHDLEKVIGKKSGDLVYGLCRGIDYEP 306
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVA 198
V+ R LPKS G K+F G L T A
Sbjct: 307 VRPRQLPKSVGCSKNFNGKLTLSTTA 332
>gi|400595519|gb|EJP63314.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 105/202 (51%), Gaps = 5/202 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV LR ++ + +TCSAG+A NK+L+KL SG KP +QT V
Sbjct: 351 DPDWDDVAILVGSEIVRGLRSEIRERMRYTCSAGVACNKLLSKLGSGFKKPNRQTVVRNR 410
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L + K++ LGGKLG + + G V DLL S ++L+ G TG WL+N
Sbjct: 411 AVGIFLHEFKLTKIRNLGGKLGEQVVSIFGTEKVEDLLPVSVEQLKAKLGEETGVWLYNT 470
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG+ EV R +S S KSF P + T WL ++ RL + + +NK
Sbjct: 471 IRGVDTSEVNPRTQLRSMLSAKSF-RPH-INTQEQADRWLRIFVGDIFNRLVEEGVLENK 528
Query: 224 RIAHTLTLHASAFKSSDSDSRK 245
R T+H SA ++ + SR+
Sbjct: 529 R--RPKTIHLSARHATQTRSRQ 548
>gi|303319933|ref|XP_003069966.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240109652|gb|EER27821.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 665
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 22/277 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ G IV +R+ + + +TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 272 DPDWDDMVMLVGADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNR 331
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + + V +LL+ ++ + +TG WL+ +
Sbjct: 332 AIQQFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYEL 391
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG + ++ + WL E+ RL + + ++
Sbjct: 392 IRGNDWSEVNPRTQIKSMISTKSFRPG---INSLEQAEKWLRIFAAEIYGRLVEEGVLEH 448
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
KR LT+H S + SR+ P+ G A +E F L + L++
Sbjct: 449 KRRPKVLTIHHR--HSGHTKSRQ------VPIPTGMAIDEEPLFALAKDLLKQV------ 494
Query: 283 KTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 319
T H W L+++ S +SG S+ +F
Sbjct: 495 -TNEGHM--WPCMNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|302921584|ref|XP_003053312.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734252|gb|EEU47599.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 683
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 125/276 (45%), Gaps = 20/276 (7%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL SG KP +QT V
Sbjct: 231 IDPDWDDVAILIGSEIVRDVRAKVRQDLGYTCSAGVASNKLLSKLGSGYKKPNKQTVVRN 290
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+V L I K++ LGGKLG + + ++ +LL+ ++ G +TG W+ N
Sbjct: 291 RAVSSFLSGFKITKLRNLGGKLGEQIVSTFNTESLTELLEVPLATIKSKLGHDTGLWIHN 350
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RGI EV +R KS S KSF + + WL ++ RL + + +N
Sbjct: 351 TIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSQEQAVRWLRIFVADIFARLVEEGVLEN 408
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
KR T+ LH + S+ P+R G A +E L ++ LG V
Sbjct: 409 KRRPRTINLHHR--------HEGQVKSRQSPIRQGKALNEESLLEL----AKDLLGQIIV 456
Query: 283 KTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+ + W LS+S + G I +
Sbjct: 457 EGR-----VWPCANLSLSVGGFEDGVKGNMGIDAFL 487
>gi|320034290|gb|EFW16235.1| sister chromatid cohesion protein [Coccidioides posadasii str.
Silveira]
Length = 665
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 22/277 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ G IV +R+ + + +TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 272 DPDWDDMVMLVGADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNR 331
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + + V +LL+ ++ + +TG WL+ +
Sbjct: 332 AIQQFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYEL 391
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG + ++ + WL E+ RL + + ++
Sbjct: 392 IRGNDWSEVNPRTQIKSMISTKSFRPG---INSLEQAEKWLRIFAAEIYGRLVEEGVLEH 448
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
KR LT+H S + SR+ P+ G A +E F L + L++
Sbjct: 449 KRRPKVLTIHHR--HSGHTKSRQ------VPIPTGMAIDEEPLFALAKDLLKQV------ 494
Query: 283 KTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 319
T H W L+++ S +SG S+ +F
Sbjct: 495 -TNEGHM--WPCMNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|409048993|gb|EKM58471.1| hypothetical protein PHACADRAFT_140428 [Phanerochaete carnosa
HHB-10118-sp]
Length = 629
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 132/275 (48%), Gaps = 19/275 (6%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ ++ ++R V + ++ SAGI+ NK LAKL + KP Q+ + +++
Sbjct: 262 DVALSIAAELMGKIRHDVYTKLGYSTSAGISRNKFLAKLTASYKKPNNQSILRNAAIPNY 321
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L +P +K++ LGGKLG +L E V+TV DLL + D++Q +G W+W I RG+
Sbjct: 322 LRPMPFQKIRFLGGKLGKALAEEYDVSTVSDLLTVNLDEIQRKFG-EESIWVWEILRGVD 380
Query: 170 GEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 227
EV+ + + KS + K+ P P + T + HW+ L EL+ RL E +
Sbjct: 381 RTEVKEKPPITKSMLASKNLPQP--IVTASQGHHWIRVLAAELALRLREARESIPALWPK 438
Query: 228 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL-REFLGSFGVKTQG 286
+L LH + F SK P + T +I D L +E +G T
Sbjct: 439 SLVLHV-------QQGHEAFRSKQAPFSF-TREITVDVIATAGDKLWKELVG-----TDT 485
Query: 287 SHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 321
S + +IT + +S S IV +G I +F P
Sbjct: 486 SRKAPMKITHIQLSFSGIVSTETGQRRIEGFFQKP 520
>gi|326481425|gb|EGE05435.1| sister chromatid cohesion protein [Trichophyton equinum CBS 127.97]
Length = 642
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D + D ++ G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 246 DPEWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNR 305
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + +E + DLL D+L+ +TG WL+ I
Sbjct: 306 AIQQFLSGYKFTKIRSLGGKLGKKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQI 365
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF P+ L ++ + W+ E+ RL + + +NK
Sbjct: 366 IRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENK 423
Query: 224 RIAHTLTLH 232
R +T+H
Sbjct: 424 RRPKMITVH 432
>gi|326468815|gb|EGD92824.1| sister chromatid cohesion protein [Trichophyton tonsurans CBS
112818]
Length = 642
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D + D ++ G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 246 DPEWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNR 305
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + +E + DLL D+L+ +TG WL+ I
Sbjct: 306 AIQQFLSGYKFTKIRSLGGKLGKKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQI 365
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF P+ L ++ + W+ E+ RL + + +NK
Sbjct: 366 IRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENK 423
Query: 224 RIAHTLTLH 232
R +T+H
Sbjct: 424 RRPKMITVH 432
>gi|389646325|ref|XP_003720794.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|86196643|gb|EAQ71281.1| hypothetical protein MGCH7_ch7g688 [Magnaporthe oryzae 70-15]
gi|351638186|gb|EHA46051.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|440479415|gb|ELQ60186.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae P131]
Length = 668
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 13/236 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D L I ++R + ++TCSAG+A NK+L+KL S KP QQT +
Sbjct: 235 DPDWDDIALLIASEITRDIRQTIFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRGR 294
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG-FNTGTWLWN 163
+V+ L K++ LGGKLG + G +V DLL+ D+L+ G +T W++N
Sbjct: 295 AVRKFLSDFKFTKIRNLGGKLGDQVVAAFGTESVSDLLEVPLDQLKLRLGEESTALWVYN 354
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RGI EV +R KS S KSF ++ +V WL ++ RL + + +N
Sbjct: 355 TIRGIDNSEVNSRTQIKSMLSAKSFRP--SIHSVDQANKWLRIFSADIFSRLVEEGVLEN 412
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT-FNLFQAGLREFL 277
KR T+ LH S ++SCP+ G + + + L Q LR+ +
Sbjct: 413 KRRPKTMNLHHRHNGQSK--------ARSCPIPQGVRVLDDSVLYELAQNLLRQIV 460
>gi|440471150|gb|ELQ40183.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae Y34]
Length = 679
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 117/237 (49%), Gaps = 15/237 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D L I ++R + ++TCSAG+A NK+L+KL S KP QQT +
Sbjct: 246 DPDWDDIALLIASEITRDIRQTIFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRGR 305
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG-FNTGTWLWN 163
+V+ L K++ LGGKLG + G +V DLL+ D+L+ G +T W++N
Sbjct: 306 AVRKFLSDFKFTKIRNLGGKLGDQVVAAFGTESVSDLLEVPLDQLKLRLGEESTALWVYN 365
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RGI EV +R KS S KSF ++ +V WL ++ RL + + +N
Sbjct: 366 TIRGIDNSEVNSRTQIKSMLSAKSFRP--SIHSVDQANKWLRIFSADIFSRLVEEGVLEN 423
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT--FNLFQAGLREFL 277
KR T+ LH S ++SCP+ G ++ +D+ + L Q LR+ +
Sbjct: 424 KRRPKTMNLHHRHNGQSK--------ARSCPIPQGV-RVLDDSVLYELAQNLLRQIV 471
>gi|67537016|ref|XP_662282.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|40741530|gb|EAA60720.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|259482486|tpe|CBF77016.1| TPA: DNA polymerase eta (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 674
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V +TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 252 DPDWDDVAMLIGAEIVRSVRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPNKQTVVRNR 311
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + G + +LLK S ++ + +T WL+ I
Sbjct: 312 AIQNFLSGFKFTKIRMLGGKLGDQVTAMFGTEQISELLKVSLEQFRAKLNDDTAVWLYGI 371
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ T+ WL+ ++ RL + + ++K
Sbjct: 372 IRGEDKSEVNPRTQIKSMLSAKSFRP--SINTLDQADKWLHIFAADIYGRLVEEGVLEHK 429
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQED-TFNLFQAGLREF 276
R T+ LH + S+ P+ G+A I ED F L + LR+
Sbjct: 430 RRPKTIALHHR--------QGAQVKSRQLPIP-GSATIDEDLLFELGKTLLRQI 474
>gi|392865724|gb|EAS31537.2| sister chromatid cohesion protein [Coccidioides immitis RS]
Length = 665
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 22/277 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ G IV +R + + +TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 272 DPDWDDVVMLVGADIVRSVRFMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNR 331
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + + V +LL+ ++ + +TG WL+ +
Sbjct: 332 AIQQFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYEL 391
Query: 165 ARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RG EV R KS S KSF PG + ++ + WL E+ RL + + ++
Sbjct: 392 IRGNDWSEVNPRTQIKSMISTKSFRPG---INSLEQAEKWLRIFAAEIYGRLVEEGVLEH 448
Query: 223 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
KR LT+H S + SR+ P+ G A +E F L + L++
Sbjct: 449 KRRPKVLTIHHR--HSGHTKSRQ------VPIPTGMAIDEEPLFALAKDLLKQV------ 494
Query: 283 KTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 319
T H W L+++ S +SG S+ +F
Sbjct: 495 -TNEGHM--WPCMNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|327301129|ref|XP_003235257.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
gi|326462609|gb|EGD88062.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
Length = 645
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D + D + G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 246 DPEWDDIAIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNR 305
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + +E + DLL D+L+ +TG WL+ I
Sbjct: 306 AIQQFLSGYKFTKIRSLGGKLGKKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQI 365
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF P+ L ++ + W+ E+ RL + + +NK
Sbjct: 366 IRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENK 423
Query: 224 RIAHTLTLH 232
R +T+H
Sbjct: 424 RRPKMITVH 432
>gi|425773935|gb|EKV12260.1| hypothetical protein PDIG_45850 [Penicillium digitatum PHI26]
gi|425782385|gb|EKV20297.1| hypothetical protein PDIP_17780 [Penicillium digitatum Pd1]
Length = 575
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D L G IV +R ++ K +TCSAGIA NKMLAKLASG NKP QT +
Sbjct: 214 DWDDIALNIGSEIVDNIRREIFKHMRYTCSAGIARNKMLAKLASGYNKPNHQTVILRRGT 273
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
+ L + K++ LGG LGT + + V +LL +++E G G W++N+ R
Sbjct: 274 REFLSTHKFTKIRGLGGLLGTQISEKFNTKMVSELLAIPLSQMKEEMGLEVGAWVFNVIR 333
Query: 167 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 226
G EV R+ +S S K+F P+ + ++ WL +L RL +N RI+
Sbjct: 334 GEEQSEVNPRMHVQSMLSAKTFV-PKIV-SIDQAAKWLRIFVADLLGRLDELGSENHRIS 391
Query: 227 HTL 229
T+
Sbjct: 392 PTI 394
>gi|345566460|gb|EGX49403.1| hypothetical protein AOL_s00078g436 [Arthrobotrys oligospora ATCC
24927]
Length = 776
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 2/169 (1%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D ++ IV ++R +V + +TCSAGI+ NKMLAKL SG KP QQT V +V
Sbjct: 229 DWDDIIMGIAAEIVADIRGEVRRRLGYTCSAGISRNKMLAKLGSGYKKPNQQTIVRNRAV 288
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
L S+ ++ LGGKLG+ + G V ++L + + G +TGTWL+ R
Sbjct: 289 THFLSSMKFTSIRNLGGKLGSEVATAFGTENVSEVLSVPLETFKAKLGDDTGTWLYKTIR 348
Query: 167 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
GI EV R KS S KSF A+ ++WL C ++ R+
Sbjct: 349 GIDTTEVLTRTDIKSMLSAKSFTP--AITRYQQGENWLKVFCADIVSRV 395
>gi|238505178|ref|XP_002383818.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
gi|220689932|gb|EED46282.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
Length = 673
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V +TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 251 DPDWDDVAMLIGSDIVRAVRTVVWDNLSYTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNR 310
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + G V DLL+ + ++ + +T WL+ I
Sbjct: 311 AIQNFLSGFKFTKIRMLGGKLGDQVTALFGTEQVSDLLQVTLEQFRAKLDDDTANWLYGI 370
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ +V + WL ++ RL D + +++
Sbjct: 371 IRGEDKSEVNPRTQIKSMLSAKSFRP--SINSVEQAERWLRIFAADIYGRLVEDGVLEHR 428
Query: 224 RIAHTLTLH 232
R TL LH
Sbjct: 429 RRPKTLALH 437
>gi|425772364|gb|EKV10771.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum PHI26]
gi|425774774|gb|EKV13074.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum Pd1]
Length = 646
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 143/321 (44%), Gaps = 30/321 (9%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ G IV +R V ++ +TCSAG+ NKM+AKL S NKP QT V
Sbjct: 238 DPDWDDVVMLIGSEIVRSVRSAVWEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNR 297
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L +++ LGGKLG + G V +LL ++L+ T TWL+ I
Sbjct: 298 AVQNFLGGYKFTQIRMLGGKLGDQITAAFGTEKVSELLNAPLEQLRTKLADQTATWLYGI 357
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ ++ + WL ++ RL D + +N+
Sbjct: 358 IRGEDRSEVNPRTQIKSMLSAKSFRP--SINSLDQAEKWLRIFAADIYGRLVEDGVLENR 415
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
R +T+H +S S+ P+ +A + ++L + LR+ +
Sbjct: 416 RRPKVITMHHRTAQSR---------SRQIPIASSSAIDENLLYDLANSLLRQVV------ 460
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSP 343
+ W + LS+S S +S +I + D+ + S ID +P
Sbjct: 461 ---ADGQAWPCSNLSLSVSSFEDGVSNNKAIEGFLIRGDQAKALSHSSRPRDIDNSP--- 514
Query: 344 SGSESYSTLNSTELQNELPGE 364
S L STE + +L G+
Sbjct: 515 ------SELPSTEKRRKLDGD 529
>gi|315048855|ref|XP_003173802.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
gi|311341769|gb|EFR00972.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
Length = 646
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D + D ++ G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 248 DPEWDDVVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNR 307
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + +E + DLL D+L+ +TG WL+ I
Sbjct: 308 AIQQFLSGYKFTKIRSLGGKLGKKIASEFETDKISDLLNIPLDRLKNKLDDDTGVWLYQI 367
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF P+ L ++ + W+ E+ RL + + +NK
Sbjct: 368 IRGEDDCEVTPRTEIKSMISAKSF-NPK-LVSLDQGEKWMRIFVAEIYGRLIDEGVLENK 425
Query: 224 RIAHTLTLH 232
R +T+H
Sbjct: 426 RRPKMITVH 434
>gi|340519771|gb|EGR50009.1| predicted protein [Trichoderma reesei QM6a]
Length = 661
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 20/280 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ G IV +R Q+ + +TCSAGIA++K+++KL S KP QT V
Sbjct: 226 DPDWDDVVMLVGSEIVRGVRAQIRERLGYTCSAGIANSKLVSKLGSAYKKPNAQTVVRSR 285
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L + + KM+ LGGKLG + + +V +L D+++ G T WL+N
Sbjct: 286 AVLPFLTGIKVTKMRNLGGKLGDQVVSIFNTESVKELRDIPLDQIKAKLGDETAVWLYNT 345
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG+ EV +R KS S KSF ++ T WL ++ RL + + ++K
Sbjct: 346 IRGVDHSEVNSRTQIKSMLSAKSFRP--SINTPEQAIKWLRIFAGDIYSRLVEEGILEHK 403
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
R T+ LH + SK P+ G A ++ FNL + L + + V
Sbjct: 404 RWPRTINLHHRHAGQTR--------SKQSPISPGKALDEQALFNLAKDLLHQIMAEGDV- 454
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDK 323
W LS+S + G +I +F D+
Sbjct: 455 --------WPCANLSLSVGGFEEGVKGNMAIGAFFKKRDE 486
>gi|358385031|gb|EHK22628.1| hypothetical protein TRIVIDRAFT_191350 [Trichoderma virens Gv29-8]
Length = 654
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 3/203 (1%)
Query: 31 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 90
ND+ + E D D D ++ G IV +R ++ ++ +TCSAGIA+NK+++KL S
Sbjct: 212 NDNLVVLDEDQETLDPDWDDVVILLGSEIVRGVRAEIREKLGYTCSAGIANNKLVSKLGS 271
Query: 91 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 150
KP QT V +V L + + KM+ LGGKLG + + G +V +L D+++
Sbjct: 272 AFKKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKLGDQVVSTFGTESVKELRDIPLDQIK 331
Query: 151 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 210
G T WL+N RGI EV +R KS S KSF ++KT WL +
Sbjct: 332 AKLGDETAVWLYNTIRGIDLSEVNSRTQIKSMLSAKSFRP--SIKTPEQGIKWLRIFAGD 389
Query: 211 LSERLCSD-LEQNKRIAHTLTLH 232
+ RL + + ++KR T+ LH
Sbjct: 390 IYSRLVEEGILEHKRWPRTINLH 412
>gi|156058306|ref|XP_001595076.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980]
gi|154700952|gb|EDO00691.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 611
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R + ++ ++TCSAGIA NKML+KL SG KP QQT +
Sbjct: 172 DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGIAQNKMLSKLGSGHKKPNQQTVIRNR 231
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGK G + V DLL + L++ G TGTW+ N+
Sbjct: 232 AVQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLVPMEHLKQKLGEETGTWVHNV 291
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG +V +R KS S KSF ++ T WL ++ RL + + +NK
Sbjct: 292 IRGNDTSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWLRIFVADIHSRLVEEGVLENK 349
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 350 RRPKTINLH 358
>gi|70998010|ref|XP_753737.1| sister chromatid cohesion protein (Eso1) [Aspergillus fumigatus
Af293]
gi|66851373|gb|EAL91699.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus Af293]
gi|159126527|gb|EDP51643.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus A1163]
Length = 672
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 13/236 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V + +TCS G+A NKM+AKL S NKP +QT V
Sbjct: 250 DPDWDDIAMLIGSEIVRSVRTAVWNKLSYTCSGGVARNKMMAKLGSACNKPNKQTIVRNR 309
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L S K++ LGGKLG + G V DLL ++ + + T +WL+ I
Sbjct: 310 AIQNFLGSFKFTKIRMLGGKLGDQVATLFGTEQVSDLLLVPLEQFRAKFDDATASWLYGI 369
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ + + WL ++ RL D + +N+
Sbjct: 370 IRGEDKSEVNPRTQIKSMLSAKSFRP--SINSADQAEKWLRIFAADIYGRLVEDGVLENR 427
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQED-TFNLFQAGLREFLG 278
R T+ LH + S+ P+ G+A I E F L + LR+ +G
Sbjct: 428 RRPKTIALHHR--------QGGQVRSRQLPIP-GSATIDEGLLFELGRTLLRQVIG 474
>gi|169780638|ref|XP_001824783.1| DNA polymerase eta [Aspergillus oryzae RIB40]
gi|83773523|dbj|BAE63650.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867099|gb|EIT76352.1| DNA polymerase iota/DNA damage inducible protein [Aspergillus
oryzae 3.042]
Length = 673
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V +TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 251 DPDWDDVAMLIGSDIVRAVRTVVWDNLSYTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNR 310
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L K++ LGGKLG + G V DLL+ + ++ + +T WL+ I
Sbjct: 311 AIQTFLGGFKFTKIRMLGGKLGDQVTALFGTEQVSDLLQVTLEQFRAKLDDDTANWLYGI 370
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ +V + WL ++ RL D + +++
Sbjct: 371 IRGEDKSEVNPRTQIKSMLSAKSFRP--SINSVEQAERWLRIFAADIYGRLVEDGVLEHR 428
Query: 224 RIAHTLTLH 232
R TL LH
Sbjct: 429 RRPKTLALH 437
>gi|331234078|ref|XP_003329699.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308689|gb|EFP85280.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 673
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 133/286 (46%), Gaps = 26/286 (9%)
Query: 45 DADH-----RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
D+DH D L G ++ R QV +TCSAGIA NKMLAKL S KP QT
Sbjct: 205 DSDHPTNTWTDIALLIGAELMARCRQQVFDRLGYTCSAGIATNKMLAKLCSAYKKPNAQT 264
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT------VGDLLKFSEDKLQESY 153
+ +V+ L + K++ LGGKLG S+ +EL +T + ++ K +LQ S
Sbjct: 265 VLRAGAVRDFLRPFELSKLRFLGGKLGQSV-SELVASTCDKSCQLSEVWKIPLSQLQASL 323
Query: 154 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
G TG W+W RG+ EV+ + L KS S K+F ++ T + HWL L +L
Sbjct: 324 GEQTGMWVWETVRGVDRSEVETKTLVKSMMSSKNFRP--SITTWSQALHWLRILARDLCA 381
Query: 214 RLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAG 272
RL E I + +H + + FP TA++ +D +F G
Sbjct: 382 RLNEAREATPGIWPKLIVMHKRDGLQNSLTKQIAFPF--------TAQLTDD--YIFSLG 431
Query: 273 LREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
++ L F V Y +T+L+++ + + +G +I +F
Sbjct: 432 -KKLLQEFAVIQTDQTYRLDTVTSLALAFHNLERIEAGQRAIQGFF 476
>gi|353235092|emb|CCA67110.1| related to DNA polymerase eta [Piriformospora indica DSM 11827]
Length = 615
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 18/291 (6%)
Query: 46 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
A D L+ ++ R ++ + +T SAGIA NK LAKL + KP Q+ + ++
Sbjct: 236 ATWHDVALSIAAELLDNTRREIRETLGYTTSAGIARNKFLAKLVASYKKPNSQSVLRNAA 295
Query: 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 165
+ L LP +K++ LGGKLGT L E TVG+LL ++Q +G + W++ +
Sbjct: 296 IPNYLRPLPFQKIRFLGGKLGTILAEEYEAKTVGELLYIDLAEMQRKFGPES-LWVYQVF 354
Query: 166 RGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI EV+ + + KS + K+ P P ++ V W+ LC EL+ RL E
Sbjct: 355 RGIDIGEVKEKPPVNKSMLASKNLPKP--IRQDGDVLQWVRVLCSELAVRLLEARETGTV 412
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL----REFLGSF 280
T+ LH ++ DS S+ SK P + +++ T ++ A + +E S
Sbjct: 413 WPKTIALHTK--QAGDSASK----SKQTPFPF----VRDLTGDVIVAAVMKLWKELHTSD 462
Query: 281 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQL 331
+ + +I ++VS + + + G +I +F GP G++S +L
Sbjct: 463 AERAANPNVPKMKIINIAVSFNGVETLEQGQRNIAGFFGGPASKGASSSKL 513
>gi|340975581|gb|EGS22696.1| DNA polymerase eta-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 507
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 10/238 (4%)
Query: 41 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 100
L D D D IV LR + ++ +TCSAGIA NK+L+KL S KP QQT
Sbjct: 245 LAILDPDWDDVAFYVASGIVRHLRSSIKEKLGYTCSAGIARNKLLSKLGSSYKKPNQQTV 304
Query: 101 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ +V L + K++ LGGKLG + ++ DLL ++++ G T W
Sbjct: 305 IRNRAVAHFLSGVKFTKIRNLGGKLGEQVSRAFNTDSIPDLLTVPIEQMKVKLGDETAIW 364
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-L 219
L+N RG+ EV R+ KS S KSF L T+ WL ++ RL + +
Sbjct: 365 LYNTLRGVDMSEVNPRIQIKSMLSAKSFRP--TLTTIDQAVRWLRIFAADIFSRLVEEGV 422
Query: 220 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFL 277
+++R T+ LH ++ +R S+SCP+ G A F+L + L +
Sbjct: 423 LEHRRHPKTINLH---YRPLGGQAR----SRSCPIPQGRALDDGTLFDLAKTLLTHIV 473
>gi|322696817|gb|EFY88604.1| sister chromatid cohesion protein Eso1 [Metarhizium acridum CQMa
102]
Length = 585
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 11/235 (4%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R QV +TCSAGIA+NKM++KL SG KP QT V
Sbjct: 163 DPDWDDVAILIGSEIVRNVRAQVHGRLGYTCSAGIANNKMVSKLGSGFKKPNSQTVVRSR 222
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L + K++ LGGKLG + + ++ DLL+ S ++++ G TG+WL +
Sbjct: 223 AVHLFLADFKVTKIRNLGGKLGERVVSVFNTQSIKDLLEVSLEQMKSKLGDETGSWLHDT 282
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV +R KS S KSF ++ T WL ++ RL + + N+
Sbjct: 283 LRGIDNSEVNSRTQIKSMLSAKSFRP--SISTEEQALKWLRIFVGDIFSRLVEEGVLDNR 340
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 278
R ++ LH + SK P+ G +E F+L + L + L
Sbjct: 341 RRPRSINLHHRHAGQTR--------SKQSPIPPGQVIDEESLFHLAKDLLTQILA 387
>gi|453085241|gb|EMF13284.1| DNA/RNA polymerase, partial [Mycosphaerella populorum SO2202]
Length = 696
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ IV ++R V K+ +T SAGI+ NKMLAKL SG KP QT +
Sbjct: 217 DPDWDDIVVLLASEIVRDVRAAVFKQLNYTMSAGISRNKMLAKLGSGHKKPNSQTVIRNR 276
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG + TV +LL S ++L++ G TG+WL++I
Sbjct: 277 AVQHFLSGYKFTKIRSLGGKLGDQIVAAFNTDTVAELLPVSVEQLKKQLGDETGSWLYDI 336
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ + WL ++ RL + + +NK
Sbjct: 337 LRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFDVACKWLRIFVSDIYGRLVEEGVLENK 394
Query: 224 RIAHTLTLH 232
R ++ +H
Sbjct: 395 RRPKSINIH 403
>gi|255955947|ref|XP_002568726.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590437|emb|CAP96625.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 646
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 103/202 (50%), Gaps = 6/202 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ G IV +R V ++ +TCSAG+ NKM+AKL S NKP QT V
Sbjct: 238 DPDWDDIVMLIGSEIVRSVRNTVWEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNR 297
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L +++ LGGKLG + G V DLL ++L+ +T +WL+ I
Sbjct: 298 AVQNFLGGYKFTQIRMLGGKLGEQITAAFGTEKVSDLLNVPLEQLRSKLADHTASWLYGI 357
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ ++ + WL ++ RL D + +N+
Sbjct: 358 IRGDDRSEVNPRTQIKSMLSAKSFRP--SINSLDQAEKWLRIFAADIYGRLVEDGVLENR 415
Query: 224 RIAHTLTLHASAFKSSDSDSRK 245
R +T+H +++ S SR+
Sbjct: 416 RRPKVITMH---HRTAQSRSRQ 434
>gi|452002715|gb|EMD95173.1| hypothetical protein COCHEDRAFT_1129437 [Cochliobolus
heterostrophus C5]
Length = 717
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D +A IV ++R + +TCS G+A NKMLAKL SG KP QQT +
Sbjct: 231 DPDWDDVCMAIASEIVRDVRKHIKDALGYTCSGGVARNKMLAKLGSGYKKPNQQTVIRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+VK L + K++ LGGKLG + + G V DL++ D+L++ G +TG+WL++I
Sbjct: 291 AVKHFLSDMKFTKIRMLGGKLGDEVVSIFGTDKVKDLIEQPLDQLKK-LGDDTGSWLYSI 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ + WL ++ R + + +NK
Sbjct: 350 IRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEQGVRWLRIFVADIFSRCVEEGVLENK 407
Query: 224 RIAHTLTLH 232
R ++ LH
Sbjct: 408 RRPKSINLH 416
>gi|408392199|gb|EKJ71557.1| hypothetical protein FPSE_08196 [Fusarium pseudograminearum CS3096]
Length = 737
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 11/235 (4%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S KP +QT V
Sbjct: 283 DPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASNKLLSKLGSAYKKPNKQTVVRNR 342
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V + + K++ LGGKLG + + V +LL+ ++ G +TG W++N
Sbjct: 343 AVSAFMAGFKVTKLRNLGGKLGEQIVSTFNTENVTELLEVPLSSMKAKLGHDTGFWVFNT 402
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV +R KS S KSF + + WL ++ RL + + +NK
Sbjct: 403 IRGIDTSEVNSRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAADIFARLVEEGVLENK 460
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 278
R T+ LH + S+ P+ G A +E F L + L + +
Sbjct: 461 RRPKTMNLH--------HRHEGQVRSRQVPIHQGRALDEECLFELAKDLLSQIIA 507
>gi|167536588|ref|XP_001749965.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771475|gb|EDQ85140.1| predicted protein [Monosiga brevicollis MX1]
Length = 722
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 131/289 (45%), Gaps = 39/289 (13%)
Query: 20 SHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGI 79
+H++G DG D WL + + D LL G +I E+R +V +ET + CSAGI
Sbjct: 164 THVMGYAPDDGPDDHLGFG-WLPKSE---EDALLFHGAMIAAEIRFRVFEETGYVCSAGI 219
Query: 80 AHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVG 139
AHNK+ AK+ SG NKP+QQT P +S ++ +Q G +L V
Sbjct: 220 AHNKLFAKMGSGFNKPSQQTLYPRASSGD-------QQYRQAGERL-----------LVA 261
Query: 140 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 199
D L S +L+ + T WL + RG V ++ P+S KS G +A + +
Sbjct: 262 DCLGLSLAELRTEFSSETAAWLHGLLRGHDSRAVASKGPPRSLLEAKSITG-QATQLIV- 319
Query: 200 VQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSC-PLRYGT 258
V++W+N LC L+ R+ D ++ R L FK +D S+SC P+ +
Sbjct: 320 VEYWINNLCHGLARRILDDARRHNRWPKNYVLQ---FKRR-ADRTYFGASRSCGPVPH-- 373
Query: 259 AKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 307
I D QA E + Q G ++ ++ A K VP+
Sbjct: 374 --ITRDMVRHAQANPEEG------RVQADITEGRELSGVAAGARKDVPL 414
>gi|242790335|ref|XP_002481538.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718126|gb|EED17546.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 658
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 2/171 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G I+ +R + + +TCSAGIA NKM++KL S NKP +QT +
Sbjct: 247 DPDWDDVAMLIGAEIIRSIRSAIWDKLSYTCSAGIARNKMMSKLGSAQNKPNKQTIIRNR 306
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L +++ LGGKLG ++ E G V +LL S ++ + +T WL+NI
Sbjct: 307 AIQNFLGGFQFTRIRMLGGKLGEQIRAEFGTEQVKELLNISVEQFKAKLDDDTAVWLYNI 366
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
RGI EV R KS S KSF ++ + + WL +L L
Sbjct: 367 IRGIDDSEVNTRTQIKSMLSAKSFRP--SINSADQARKWLRIFAADLYNSL 415
>gi|398406126|ref|XP_003854529.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
gi|339474412|gb|EGP89505.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
Length = 678
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 128/275 (46%), Gaps = 20/275 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ IV ++R + ++ ++TCSAG++ NKMLAKL SG KP QT +
Sbjct: 226 DPDWDDIVMLIASEIVRDVRKAIWEQLKYTCSAGLSRNKMLAKLGSGHKKPNSQTIIRNR 285
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG + TV +LL +++++ G +TG WL +I
Sbjct: 286 AVQHFLSGFKFTKIRNLGGKLGDEVVAAFNTDTVSELLPVPVEQMKKQLGDDTGMWLHSI 345
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ + WL ++ RL + + NK
Sbjct: 346 IRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEVACRWLRIFVADIFGRLVEEGVLDNK 403
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
R TLT+H + +R SK P+ G A I ED L++A + L GV
Sbjct: 404 RRPKTLTIH----HRQGAQTR----SKQAPIPMGRA-ITED--GLYEAA-KNLLA--GVV 449
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
G W LS++ + G I +
Sbjct: 450 VDG---RAWPCANLSLAVGGFEEGVQGNLGIGNFL 481
>gi|336370736|gb|EGN99076.1| hypothetical protein SERLA73DRAFT_168617 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ ++ ++R +V + +T SAGI+ NK LAKL + KP Q+ + +++
Sbjct: 249 DVALSIAAELMDQIRKEVHTKLGYTTSAGISRNKFLAKLCASYKKPNSQSILRNTAIPNY 308
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP +K++ LGGKLG +L E V+TVGDLL S +++Q +G N+ W++ + RGI
Sbjct: 309 LRPLPFQKIRFLGGKLGDALAKEYDVSTVGDLLTISLEEMQRKFGENS-IWVYELLRGID 367
Query: 170 GEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 227
EV+ + + KS + K+ P P + + HWL L EL+ RL E + +
Sbjct: 368 RSEVKEKSAMFKSMLASKNLPKP--ITNPSEGHHWLRVLAAELALRLKDSREASPNLWPK 425
Query: 228 TLTLHASAFKSSDSDSRKKFP 248
T+ LHA + + FP
Sbjct: 426 TIVLHARKGYETARSKQASFP 446
>gi|119479517|ref|XP_001259787.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
gi|119407941|gb|EAW17890.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 112/236 (47%), Gaps = 13/236 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R V + +TCS G+A NKM++KL S NKP +QT V
Sbjct: 251 DPDWDDIAMLIGSEIVRSVRTAVWNKLSYTCSGGVARNKMMSKLGSACNKPNKQTIVRNR 310
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+++ L S K++ LGGKLG + G V DLL ++ + +T +WL+ I
Sbjct: 311 AIQNFLGSYKFTKIRMLGGKLGDQVATLFGTEQVSDLLPVPLEQFRAKLDDDTASWLYGI 370
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ + + WL ++ RL D + +N+
Sbjct: 371 IRGEDKSEVNPRTQIKSMLSAKSFRP--SINSADQAEKWLRIFAADIYGRLVEDGVLENR 428
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQED-TFNLFQAGLREFLG 278
R T+ LH + S+ P+ G+A I E F L + LR+ +G
Sbjct: 429 RRPKTVALHHR--------QGGQVRSRQLPIP-GSATIDESLLFELGRTLLRQVIG 475
>gi|46130620|ref|XP_389090.1| hypothetical protein FG08914.1 [Gibberella zeae PH-1]
Length = 684
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 11/235 (4%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S KP +QT V
Sbjct: 230 DPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASNKLLSKLGSAYKKPNKQTVVRNR 289
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V + + K++ +GGKLG + + V +LL+ ++ G +TG W++N
Sbjct: 290 AVSAFMAGFKVMKLRNMGGKLGEQIVSTFNTENVTELLEVPLSSMKAKLGHDTGFWVFNT 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV R KS S KSF + + WL ++ RL + + +NK
Sbjct: 350 IRGIDTSEVNPRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAADIFARLVEEGVLENK 407
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 278
R T+ LH + S+ P+ G A +E F L + L + +
Sbjct: 408 RRPKTMNLHHR--------HEGQVRSRQVPIHQGRALDEECLFELAKDLLSQIIA 454
>gi|402084841|gb|EJT79859.1| sister chromatid cohesion protein Eso1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 785
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 129/277 (46%), Gaps = 20/277 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D +L IV +R+ V + +TCSAG+A NK+L+KL S KP QQT +
Sbjct: 237 DPDWDDVVLLLASEIVRNIRLAVRERLGYTCSAGVASNKLLSKLGSAHRKPNQQTVIRNR 296
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L L K++ LGGKLG + G +V +LL + L+ G +GTW+++I
Sbjct: 297 SVHHFLSDLKFTKIRNLGGKLGEQVVEAFGSDSVSELLAAPLELLKAKLGAESGTWVYHI 356
Query: 165 ARG-ISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQ 221
RG +GE V +R KS S KSF P + AS WL ++ RL + + +
Sbjct: 357 IRGDDAGEPVNSRTQIKSMLSAKSFRPSINRPEQAAS---WLRIFAADIFARLIEEGVLE 413
Query: 222 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG 281
NKR T+ LH + S+SC + G A ++ + L Q LR+ + G
Sbjct: 414 NKRRPRTMNLHHRNVGQTR--------SRSCQIPQGKALDEQVLYELAQTLLRQIVAEAG 465
Query: 282 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+ W LS+ + ++G I +
Sbjct: 466 SE------RAWSCDNLSLQVAGFEDGITGNMGIGGFL 496
>gi|258570849|ref|XP_002544228.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237904498|gb|EEP78899.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 588
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 128/276 (46%), Gaps = 21/276 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D ++ G I+ +R+ V + ++TCS GIA NKM+AKL S NKP +QT V
Sbjct: 196 DPDWDDVVMLIGAEIIRSVRLLVWERLKYTCSGGIARNKMMAKLGSACNKPNKQTIVRHR 255
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ L K++ LGGKLG + + VG+L + ++L+ +TG WL +
Sbjct: 256 AVQQFLGDFKFTKIRNLGGKLGKHISSTFETEQVGELQQVPLEQLKAKLDDDTGMWLHEL 315
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S K+F ++ + + WL E+ RL + + ++K
Sbjct: 316 IRGNDYSEVTPRTQIKSMSSTKAFRP--SITSSEQAEKWLRIFVAEIYGRLVEEGVLEHK 373
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
R LT+H ++ S+ P+ G A +E F L + L++ + +
Sbjct: 374 RRPKVLTIHRYTGQTK---------SRQIPIPSGMALGEEPLFALAKQLLKQIVNDGQM- 423
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 319
W LS++ S ++G S+ +F
Sbjct: 424 --------WPCINLSLTVSGFEDGVAGNQSLDGFFT 451
>gi|322709529|gb|EFZ01105.1| sister chromatid cohesion protein Eso1 [Metarhizium anisopliae
ARSEF 23]
Length = 651
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +R QV +TCSAGIA+NKM++KL SG KP QT V
Sbjct: 227 DPDWDDVAILIGSEIVRNVRAQVRGRLGYTCSAGIANNKMVSKLGSGFKKPNSQTVVRSR 286
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L + K++ LGGKLG + + ++ DLL+ S + ++ G TG+WL +
Sbjct: 287 AVHLFLADFKVTKIRNLGGKLGERVVSTYSTQSIKDLLEVSLEHMKSKLGDETGSWLHDT 346
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV +R KS S KSF ++ T WL ++ RL + + N+
Sbjct: 347 LRGIDNSEVSSRTQIKSMLSAKSFRP--SISTEEQALKWLRIFVGDIFSRLGEEGVLDNR 404
Query: 224 RIAHTLTLH 232
R ++ LH
Sbjct: 405 RRPRSINLH 413
>gi|242016043|ref|XP_002428648.1| DNA polymerase IV, putative [Pediculus humanus corporis]
gi|212513311|gb|EEB15910.1| DNA polymerase IV, putative [Pediculus humanus corporis]
Length = 292
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 91/141 (64%), Gaps = 7/141 (4%)
Query: 20 SHILG---LESKDGNDSKATVKEWLCRCD----ADHRDKLLACGVLIVTELRMQVLKETE 72
++ILG L++KD + EW+ + ++ D LA G +I+ ++R ++L++T
Sbjct: 147 TYILGHCDLKNKDEEKRLEGLAEWIRITENEKMVENADYKLAIGGIIMEKMRSKILEKTS 206
Query: 73 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 132
F CSAGIAHNK+LAKL +G++KP +QT +P +SV L + LPI+K+K LGGKLG + +
Sbjct: 207 FHCSAGIAHNKILAKLTAGLHKPKKQTILPHNSVPELYEKLPIRKVKSLGGKLGKHVSEK 266
Query: 133 LGVTTVGDLLKFSEDKLQESY 153
L V + +L KFS LQ+ +
Sbjct: 267 LSVNYMSELYKFSLQDLQQEF 287
>gi|449297801|gb|EMC93818.1| hypothetical protein BAUCODRAFT_36277 [Baudoinia compniacensis UAMH
10762]
Length = 723
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 3/175 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
IV ++R V + +TCSAGI+ NKMLAKL +G +KP QT + +V+ L K+
Sbjct: 245 IVRDVRKAVFDQLHYTCSAGISKNKMLAKLGAGHHKPNGQTVIRNRAVQQFLSGFKFTKI 304
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LGGKLG L V ++LK ++L++ +G +TG+WL++ RG EV R
Sbjct: 305 RNLGGKLGDELVAAFNTDLVSEMLKVPLEQLKKQFGDDTGSWLYSTFRGEDTSEVNPRTQ 364
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 232
KS S KSF ++ + WL ++ RL + + +NKR T+ LH
Sbjct: 365 IKSMLSAKSFRP--SINSFEVACKWLRIFVADIFSRLVEEGVLENKRRPKTINLH 417
>gi|346320479|gb|EGX90079.1| sister chromatid cohesion protein Eso1 [Cordyceps militaris CM01]
Length = 670
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 97/190 (51%), Gaps = 3/190 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + G IV +LR ++ ++ +TCSAG+A NK+L+KL SG KP +QT V
Sbjct: 230 DPDWDDVAILVGSEIVRDLRSEIREKLRYTCSAGVACNKLLSKLGSGYKKPNRQTVVRNR 289
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L + K++ LGGKLG + + V DLL ++L+ G TG WL+N
Sbjct: 290 AVAVFLQDFKLTKIRNLGGKLGEQVVSIFETEQVKDLLPVPVEQLKAKLGDETGIWLYNT 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG+ EV R KS S KSF + T WL ++ RL + + +NK
Sbjct: 350 IRGVDTSEVNPRTQIKSMLSAKSFRP--YINTQDQAIKWLRIFAGDIFNRLVEEGVLENK 407
Query: 224 RIAHTLTLHA 233
R T+ L A
Sbjct: 408 RRPKTIHLSA 417
>gi|395332120|gb|EJF64499.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 725
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 36/292 (12%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ ++ +R + + +T SAG+A NK LAKL + KP QT + +++
Sbjct: 282 DVALSIAAELMMRIREDIRTKLGYTTSAGLARNKFLAKLTASYKKPMNQTILRNAAIPNY 341
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L +P +K++ LGGKLG +L E V+TV DLL S +++Q +G N+ W++ I RGI
Sbjct: 342 LRPMPFQKIRFLGGKLGKALAEEYDVSTVSDLLTISLEEMQRKFGENS-IWVYEILRGID 400
Query: 170 GEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 227
EV+ + + KS + K+ P P + A HW+ L EL+ RL + N +
Sbjct: 401 RTEVKEKSAVNKSMLASKNLPQP--ITKAAEGYHWIRVLAAELALRLNEARDSNPALWPK 458
Query: 228 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG------ 281
T+ LH R+ Y T + ++ F ++ + + SFG
Sbjct: 459 TIVLHI----------RRG---------YETMRSKQTPFPFTRSVTVDVIASFGDKLWKE 499
Query: 282 -VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLP 332
V T GS + ++IT + +S S I + +G +I + + + EQ+P
Sbjct: 500 LVGTAGS--TPFKITNVQLSFSGIGTMEAGQRTIEGFLSA---RTACDEQIP 546
>gi|451847016|gb|EMD60324.1| hypothetical protein COCSADRAFT_39969 [Cochliobolus sativus ND90Pr]
Length = 716
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 15/212 (7%)
Query: 22 ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 81
++G +DG D D D D + IV ++R + +TCS G+A
Sbjct: 219 LVGTGEEDGEDR-----------DPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGGVAR 267
Query: 82 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 141
NKMLAKL SG KP QQT + +VK L + K++ LGGKLG + + G V DL
Sbjct: 268 NKMLAKLGSGYKKPNQQTVIRNRAVKNFLSDMKFTKIRMLGGKLGDEVVSTFGTDKVRDL 327
Query: 142 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 201
++ D+L++ G +TG+WL++ RG EV R KS S KSF ++ +
Sbjct: 328 MEQPLDQLKK-LGEDTGSWLYSTIRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEQGV 384
Query: 202 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 232
WL ++ R + + +NKR ++ LH
Sbjct: 385 RWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|396501078|ref|XP_003845891.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
gi|312222472|emb|CBY02412.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
Length = 731
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 18/233 (7%)
Query: 4 ETPPESLDEVDEEAL---KSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
E P E L +V AL ++ +DG D+ D D D + IV
Sbjct: 199 EDPTERLPKVPTTALDWAADALVETGEEDGEDA-----------DPDWDDVCMVIASEIV 247
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
E+R + +TCSAG+A NKML+KL SG KP QQT + +VK L + K++
Sbjct: 248 REVRRHIKDTLGYTCSAGVARNKMLSKLGSGYKKPNQQTVIRNRAVKHFLGDMKFTKIRM 307
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
LGGKLG + G V DL+ ++L++ G +TGTWL++ RG EV R K
Sbjct: 308 LGGKLGDEVVAMFGTDKVRDLMDQPLEQLKK-LGDDTGTWLYSTIRGEDNSEVNPRTQIK 366
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 232
S S KSF ++ + WL ++ R + + +NKR T+ LH
Sbjct: 367 SMLSAKSFRP--SINSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKTINLH 417
>gi|342878015|gb|EGU79426.1| hypothetical protein FOXB_10011 [Fusarium oxysporum Fo5176]
Length = 1648
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 3/190 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S KP +QT V
Sbjct: 229 VDPDWDDVAILIGSEIVRKVRAEVRQKLGYTCSAGVASNKLLSKLGSAYKKPNKQTVVRN 288
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+V + I K++ LGGKLG + + +V +LL ++ G +T W++N
Sbjct: 289 RAVSAFMAGFKITKLRNLGGKLGEQIVSTFNTESVIELLDVPLATMKTKLGHDTSFWIYN 348
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 222
RGI EV +R KS S KSF + + WL ++ RL + + +N
Sbjct: 349 TIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAADIFARLVEEGVLEN 406
Query: 223 KRIAHTLTLH 232
KR T+ LH
Sbjct: 407 KRRPRTMNLH 416
>gi|159484140|ref|XP_001700118.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
gi|158272614|gb|EDO98412.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
Length = 873
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 52 LLAC----GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 107
L+AC G LI LR V ++ FTCSAG++ NK+LAK+ S NKP +QT V V+
Sbjct: 163 LVACSPCGGGLIAQRLRRAVYEQLGFTCSAGVSVNKLLAKVGSARNKPDKQTLVLPRGVQ 222
Query: 108 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 167
+L LP+ K++ LGGKLG +L+ +LG T G + LQ G +G W+W + RG
Sbjct: 223 DMLTDLPLGKLRGLGGKLGAALEGQLGAATAGQAAALPLEALQRVLGERSGLWVWQVVRG 282
Query: 168 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
E V + PKS S KSF A +Q WL L EEL
Sbjct: 283 QCSEPVTPKDKPKSLLSCKSF---EPTSAPAELQRWLLILAEEL 323
>gi|389748620|gb|EIM89797.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 700
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ ++ ++R V ++ +T SAGIA NK LAKL + K Q+ + +++
Sbjct: 265 DVALSIAAELMDKIRGDVREQLGYTTSAGIARNKFLAKLTASYRKYDSQSVLRNAAIPNY 324
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L + +K++ LGGKLG +L +E V+TVGDLL S +++Q +G W++ I RGI
Sbjct: 325 LQPMQFQKIRFLGGKLGKALADEYDVSTVGDLLTISLEEMQRKFG-EESIWVYEILRGID 383
Query: 170 GEEVQARL-LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 228
EV+ + + KS + K+ P P + TVA HWL L EL+ RL ++ T
Sbjct: 384 RSEVKEKPSMAKSMMASKNLPRP--ITTVAEGPHWLRVLAAELALRLNEARMEHDVWPKT 441
Query: 229 LTLH 232
+ +H
Sbjct: 442 IVVH 445
>gi|392564568|gb|EIW57746.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 699
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 5/201 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ ++ +R + + +T SAGIA NK LAKL + KP QT + +++
Sbjct: 279 DVALSIAAELMLRIREDIRTKLGYTTSAGIARNKFLAKLTASYKKPMNQTVLRNAAIPNY 338
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L + +K++ LGGKLG +L E V+TVGDLL S +++Q +G ++ W++ I RGI
Sbjct: 339 LKPMAFQKIRFLGGKLGKALAEEYDVSTVGDLLTISLEEMQRKFGEDS-IWVYEILRGID 397
Query: 170 GEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 227
EV+ + + KS + K+ P P + HW+ L EL+ RL E N +
Sbjct: 398 RSEVKEKSAVNKSMLASKNLPQP--ITKATQGYHWIRVLAAELALRLNEAREANTALWPK 455
Query: 228 TLTLHASAFKSSDSDSRKKFP 248
T+ LH + + FP
Sbjct: 456 TIVLHIRQGYETSKSKQTPFP 476
>gi|330916199|ref|XP_003297332.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
gi|311330060|gb|EFQ94574.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
Length = 715
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + IV ++R + +TCS GIA NKML+K+ SG KP QQT +
Sbjct: 231 DPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGGIARNKMLSKIGSGYKKPNQQTVIRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+VK L + K++ LGGKLG + G V DL++ D+L++ G +TGTW+++I
Sbjct: 291 AVKHFLSDMKFTKIRMLGGKLGDEVVAMFGTDKVKDLVEQPLDQLKK-LGDDTGTWIYSI 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF ++ + WL ++ R + + +NK
Sbjct: 350 IRGEDNSEVNPRTQIKSMLSAKSFRP--SIHSFEQGVRWLRIFVADIFSRCIEEGVLENK 407
Query: 224 RIAHTLTLH 232
R ++ LH
Sbjct: 408 RRPKSINLH 416
>gi|189192050|ref|XP_001932364.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973970|gb|EDU41469.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 714
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 4/189 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D + IV ++R + +TCS GIA NKML+KL SG KP QQT +
Sbjct: 231 DPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGGIARNKMLSKLGSGYKKPNQQTVIRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+VK L + K++ LGGKLG + G V DL++ D+L+ G +TGTW+ +I
Sbjct: 291 AVKHFLSDMKFTKIRMLGGKLGDEVVAMFGTDKVRDLVEQPLDQLKR-LGDDTGTWIHSI 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RG EV R KS S KSF A+ + WL ++ R + + +NK
Sbjct: 350 IRGEDNSEVNPRTQIKSMLSAKSFRP--AIHSFEQGVRWLRIFVADIFSRCVEEGVLENK 407
Query: 224 RIAHTLTLH 232
R ++ LH
Sbjct: 408 RRPKSINLH 416
>gi|443895989|dbj|GAC73333.1| protein involved in establishing cohesion between sister chromatids
during DNA replication [Pseudozyma antarctica T-34]
Length = 846
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 99/200 (49%), Gaps = 4/200 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D LA G ++ +R VL E +T SAGIA NK LAKL S KP QT + SV
Sbjct: 393 DVALALGAELLNRVRQNVLDELNYTTSAGIACNKTLAKLCSSWRKPNGQTIMRPCSVANF 452
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
SLP +K++ LGGKLG ++ E TV DL + D++Q +G W++N+ RGI
Sbjct: 453 YSSLPFQKIRFLGGKLGNAMGLEWNSATVSDLWQVGLDEMQAKFG-EEARWVYNVLRGID 511
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHT 228
EV+ R+ ++ + KS A+ HWL+ L EL+ RL E+ + T
Sbjct: 512 YSEVRERVNNQTMLASKSVRP--AITKPEEAMHWLSILATELAIRLREAREERTNLWPKT 569
Query: 229 LTLHASAFKSSDSDSRKKFP 248
L L S + FP
Sbjct: 570 LVLRYIRAGSVPRSRQTAFP 589
>gi|393221247|gb|EJD06732.1| eta DNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 695
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 5/189 (2%)
Query: 46 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
A +D LA ++ +R +V ++ + SAGIA NK LAKLA+ K Q + +
Sbjct: 266 ATWQDVGLAIAAELMASMRKEVHEKLGYLTSAGIARNKFLAKLAASYRKFNTQNILRNLA 325
Query: 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 165
+ G L +P +K++ LGGKLG +L E V+TVGDLL +++Q +G W++ I
Sbjct: 326 IPGFLKPMPFQKIRFLGGKLGKALATEYDVSTVGDLLHIGIEEMQSKFG-ECSVWVYEIL 384
Query: 166 RGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI EV+ + ++ KS + K+ P P L + HW+ L EL+ RL E
Sbjct: 385 RGIDRAEVKEKAVINKSMNASKNLPKP--LTDPSEGPHWIRMLAAELAIRLNEARENTPG 442
Query: 225 I-AHTLTLH 232
+ TL+LH
Sbjct: 443 LWPRTLSLH 451
>gi|336383501|gb|EGO24650.1| hypothetical protein SERLADRAFT_449409 [Serpula lacrymans var.
lacrymans S7.9]
Length = 636
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 7/203 (3%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ--TTVPFSSVK 107
D L+ ++ ++R +V + +T SAGI+ NK LAKL + KP Q + + +++
Sbjct: 249 DVALSIAAELMDQIRKEVHTKLGYTTSAGISRNKFLAKLCASYKKPNSQVCSILRNTAIP 308
Query: 108 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 167
L LP +K++ LGGKLG +L E V+TVGDLL S +++Q +G N+ W++ + RG
Sbjct: 309 NYLRPLPFQKIRFLGGKLGDALAKEYDVSTVGDLLTISLEEMQRKFGENS-IWVYELLRG 367
Query: 168 ISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI- 225
I EV+ + + KS + K+ P P + + HWL L EL+ RL E + +
Sbjct: 368 IDRSEVKEKSAMFKSMLASKNLPKP--ITNPSEGHHWLRVLAAELALRLKDSREASPNLW 425
Query: 226 AHTLTLHASAFKSSDSDSRKKFP 248
T+ LHA + + FP
Sbjct: 426 PKTIVLHARKGYETARSKQASFP 448
>gi|197244663|dbj|BAG68958.1| DNA polymerase eta [Coprinopsis cinerea]
Length = 641
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 21/248 (8%)
Query: 4 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 63
+ P S + EEA+ H GL+ DG D+ T W D L+ +V +
Sbjct: 229 DQPSTSKQQPAEEAV--HDEGLQ--DGEDANTT---W--------HDVALSIAAGMVMKA 273
Query: 64 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 123
R VL++ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++ LGG
Sbjct: 274 RKGVLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRFLGG 333
Query: 124 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR--LLPKS 181
KLG +L E TVGDLL S D++Q +G ++ W++ I RGI EV+ + L KS
Sbjct: 334 KLGRALAQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRGIDRSEVKDKGTTLTKS 392
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSD 240
+ K+ P P + + HW+ L EL+ RL + + + + LHA S
Sbjct: 393 MLASKNLPKP--ITAASEGYHWIRVLAAELALRLNEARQISPNLWPKNIVLHARKGYESS 450
Query: 241 SDSRKKFP 248
+ FP
Sbjct: 451 RSKQAVFP 458
>gi|403415591|emb|CCM02291.1| predicted protein [Fibroporia radiculosa]
Length = 1222
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 148/315 (46%), Gaps = 26/315 (8%)
Query: 12 EVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKET 71
E+ ++A++S S+ ++S VKE C D L+ ++ +R + ++
Sbjct: 799 EIRDDAIRSQ-RSARSRTHDESSEGVKE--CDSSTTWHDVALSIAAELMGRIRRDIHEKL 855
Query: 72 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 131
+T SAG+A NK LAKL + KP Q+ + +++ L + +K++ LGGKLG ++
Sbjct: 856 GYTTSAGLARNKFLAKLTASYKKPNSQSILRNAAIPNYLRPIAFQKIRFLGGKLGKAIAE 915
Query: 132 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPG 190
E +TVGDLL + +++Q G N+ W++ I RGI EV+ + + KS + K+ P
Sbjct: 916 EFDASTVGDLLLINLEEMQRKLGENS-IWVYEILRGIDRSEVKEKSFVNKSMMASKNLPQ 974
Query: 191 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPS 249
P +T HW+ L EL+ RL +Q + TL LH + + FP
Sbjct: 975 PVTNETQG--YHWIRVLAAELALRLTEARDQTPALWPKTLVLHVRQGYDTARSKQAPFPF 1032
Query: 250 KSCPLRYGTAKIQEDTFNLFQAG---LREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 306
D + AG RE +G T S + +IT +++ + +
Sbjct: 1033 SR----------HVDIDIVASAGDKLWRELVG-----TDTSRAAPVKITHIALGFTGVES 1077
Query: 307 VLSGTCSIMKYFNGP 321
+ +G SI +F+ P
Sbjct: 1078 MEAGQQSIEGFFHTP 1092
>gi|326429234|gb|EGD74804.1| hypothetical protein PTSG_12528 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 17/190 (8%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D LL G + ELR+ V + + SAGI+H+K++AK+ SG NKP QT +P + + +
Sbjct: 201 DWLLVEGAAVAAELRVAVYERLGYVVSAGISHSKLMAKVGSGHNKPGHQTIIPHYAARPM 260
Query: 110 LDSLPIKKMKQLGGKLGT----SLQNELG-----------VTTVGDLLKFSEDKLQESYG 154
L LPI ++ QL GK+G +LQ G V D L + + L G
Sbjct: 261 LAKLPISRVPQLHGKMGRAVKLALQESRGEHWRYQALSSREVLVEDCLGLTLEYLASKLG 320
Query: 155 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 214
TW+ RG V + P+S KS +A+ T +++HW+ LC L+ER
Sbjct: 321 REAATWVHAFLRGHDTRAVHPKGPPRSLLEAKST--SKAMTTYPALRHWVGNLCFGLAER 378
Query: 215 LCSDLEQNKR 224
+ D +N R
Sbjct: 379 ILDDHARNNR 388
>gi|323507618|emb|CBQ67489.1| related to DNA polymerase eta [Sporisorium reilianum SRZ2]
Length = 831
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 3/187 (1%)
Query: 29 DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 88
D DS+A + + + + D LA G ++ +R VL E +T SAGIA NK L+KL
Sbjct: 375 DDLDSEAALWDRIEYGETTWTDVALALGAELMNRVRQNVLDELGYTTSAGIASNKTLSKL 434
Query: 89 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 148
S KP QT + SV SLP +K++ LGGKLG ++ E TV DL + D+
Sbjct: 435 CSSWRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLGNAMGIEWNSATVADLWQVGLDE 494
Query: 149 LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 208
+Q +G W++N+ RGI EV+ R+ ++ + KS A+ HWL L
Sbjct: 495 MQAKFG-EEARWVYNVLRGIDYSEVRERVNNQTMLASKSVRP--AITRPEEAIHWLGILA 551
Query: 209 EELSERL 215
EL+ RL
Sbjct: 552 TELAIRL 558
>gi|392594879|gb|EIW84203.1| DNA polymerase eta [Coniophora puteana RWD-64-598 SS2]
Length = 623
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 14/247 (5%)
Query: 5 TPPESLDEVDEEALKSHILG-LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 63
+PP LD D K H++ L S DG+DS E+ D L +T++
Sbjct: 207 SPPLELDWAD----KVHLIPILPSDDGDDSPKDESEF----PPTWHDVALCIAAEFMTKM 258
Query: 64 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 123
R QVL ++ SAG+A NK LAKL++ + KP Q+ + ++ L + +K++ LGG
Sbjct: 259 RKQVLDTLGYSTSAGLARNKALAKLSASVRKPNGQSILRNDAIPNYLRPMAFQKIRFLGG 318
Query: 124 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSH 182
KLG + +E V++VGD+L S D++Q +G W++ + RGI EV+ + KS
Sbjct: 319 KLGKAFADEYDVSSVGDILTVSLDEMQSKFG-EESLWVYELVRGIDRSEVKEKTAYFKSM 377
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDS 241
+ K+ P P + + W+ L EL+ RL E + T+ LH +
Sbjct: 378 LASKNLPKP--ITKSSEGPQWIRVLAAELTLRLNEARETMPSLWPKTIALHLRKGYEASR 435
Query: 242 DSRKKFP 248
+ FP
Sbjct: 436 SKQAPFP 442
>gi|209489406|gb|ACI49169.1| hypothetical protein Csp3_JD01.001 [Caenorhabditis angaria]
Length = 975
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 8 ESLDEVDEEALKSHILG----LESKDGNDSKATVKEWLCRC-------DADHRDKLLACG 56
E + EV++E S I+G DGND K T +E + R +D K L
Sbjct: 798 EKILEVEQETELSDIIGALPTTHIADGNDKKETEEERIDRIAKFYEETKSDENQKKLMIA 857
Query: 57 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 116
+ + ++R ++ ++T+F CSAGI +NKM+AKL +KP QQT +PF V+ +L PI
Sbjct: 858 AIAIEDIRAKIREKTQFYCSAGIGNNKMMAKLVCARHKPRQQTIIPFQYVRDILKVTPIG 917
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
++ GGK+GT + L + T+G++L +++ E++ +L +A G E V
Sbjct: 918 DIRGFGGKMGTKIMEMLKIKTMGEILTIEFERVVEAFP-EQHEYLKCVAEGYDDEPVH 974
>gi|328852695|gb|EGG01839.1| hypothetical protein MELLADRAFT_117712 [Melampsora larici-populina
98AG31]
Length = 672
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 134/330 (40%), Gaps = 42/330 (12%)
Query: 6 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 65
PP LD E H L L + D + W D L G ++ + R
Sbjct: 182 PPPQLDWKSTE----HNLILNTSDSEVDEMMTTTWT--------DVALMIGAELMAQCRK 229
Query: 66 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 125
V + +TCSAG+ NKMLAKL S KP QT + S +K L L + K++ LGGKL
Sbjct: 230 AVFDQLGYTCSAGVTSNKMLAKLCSSYKKPNAQTVLRPSCIKSFLRDLEVSKIRFLGGKL 289
Query: 126 GTSLQNELG----------------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
G SL + TTVG++ LQ G TG W+W I RGI
Sbjct: 290 GKSLIELIHHPSQATAAEEEAEESIRTTVGEVWNLDLSLLQNKLGDETGMWVWEIVRGID 349
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHT 228
EV+ + KS S K+F ++ + HWL L +L RL I T
Sbjct: 350 KTEVEPKTQVKSMMSSKNFRP--SISSWEEGIHWLRILSTDLLARLNEARTLTPGIWPKT 407
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 288
+ +H + + + FP T K+ D +F G R L F +K
Sbjct: 408 IVMHKRDGNYNSTAKQIGFPF--------TQKL--DRLYIFNLGQR-LLQEFVIKENSKK 456
Query: 289 YSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+IT+L ++ + + SG I +F
Sbjct: 457 KELGKITSLCLAFQTLERLESGQQGIEGFF 486
>gi|388852652|emb|CCF53815.1| related to DNA polymerase eta [Ustilago hordei]
Length = 874
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 3/184 (1%)
Query: 32 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 91
DS+A + + + + D LA G ++ +R VL E +T SAGI NK L+KL S
Sbjct: 396 DSEAALWDRIEYGETTWTDVALALGAELMNRVRQNVLDELGYTTSAGIGSNKTLSKLCSS 455
Query: 92 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 151
KP QT + SV SLP +K++ LGGKLG ++ E TV DL + D++Q
Sbjct: 456 WRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLGNAMGVEWNSATVSDLWNVTLDEMQA 515
Query: 152 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
G W++N+ RGI EV+ R+ ++ + KS A+ HWL L EL
Sbjct: 516 KLG-EEARWVYNVLRGIDYSEVRERVNNQTMLASKSVRP--AITKPEEAMHWLTILATEL 572
Query: 212 SERL 215
+ RL
Sbjct: 573 AIRL 576
>gi|391347259|ref|XP_003747882.1| PREDICTED: DNA polymerase eta-like [Metaseiulus occidentalis]
Length = 270
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 69/95 (72%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D LA G I+ E+R +VL+ET FTCSAGI+HNK++AKLA+G++KP + T VP SSV
Sbjct: 165 DGGDAYLARGAAIMMEMRAKVLQETGFTCSAGISHNKIVAKLAAGLHKPNRLTVVPHSSV 224
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 141
L ++PI K++ LGGKLG ++ +L V T+ +L
Sbjct: 225 ALLFTTVPIGKVRNLGGKLGENITKDLNVQTMAEL 259
>gi|19113570|ref|NP_596778.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe 972h-]
gi|12230051|sp|O42917.1|ESO1_SCHPO RecName: Full=N-acetyltransferase eso1; AltName: Full=ECO1 homolog;
AltName: Full=Sister chromatid cohesion protein eso1
gi|2842510|emb|CAA16862.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe]
gi|7678718|dbj|BAA95122.1| Eso1 [Schizosaccharomyces pombe]
Length = 872
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D L IV E+R + + ++TCSAG++ N ML+KL S NKP +QT + +++
Sbjct: 210 DWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNAI 269
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
+ L SL I ++ LGGK G + N LG ++ D+ S D L + G G +WN+
Sbjct: 270 QDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCH 329
Query: 167 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
GI E+ ++ KS S K+F + +K+ +W +L R +LE +R
Sbjct: 330 GIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASDLRSRFL-ELEGMRR 385
>gi|71003135|ref|XP_756248.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
gi|46096253|gb|EAK81486.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
Length = 865
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 3/185 (1%)
Query: 28 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 87
+D DS+A + + + + D LA G ++ +R VL E +T SAGI NK L+K
Sbjct: 381 QDDLDSEAALWDHIEYGETTWTDVALALGAELMNRVRQNVLDELGYTTSAGIGSNKTLSK 440
Query: 88 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 147
L S KP QT + SV SLP +K++ LGGKLG ++ E TV DL D
Sbjct: 441 LCSSWRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLGNAMGAEWNSATVSDLWGVGLD 500
Query: 148 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 207
++Q +G W++N+ RGI EV+ R+ ++ + KS A+ HWL+ L
Sbjct: 501 EMQAKFG-EEARWVYNVLRGIDYSEVRERVNNQTMLASKSVRP--AITKPEEATHWLDIL 557
Query: 208 CEELS 212
EL+
Sbjct: 558 STELA 562
>gi|414880430|tpg|DAA57561.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 220
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 1 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 60
M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLLACG +IV
Sbjct: 133 MVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLACGAIIV 191
Query: 61 TELRMQVLKETEFTCSAGIAHNKM 84
+LR++VL+ET+FTCSAGIAHNK+
Sbjct: 192 AQLRVRVLEETQFTCSAGIAHNKV 215
>gi|409078314|gb|EKM78677.1| hypothetical protein AGABI1DRAFT_121111 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 674
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ ++ E R QV +E +T SAGIA NK LAKL + KP Q+ + ++
Sbjct: 295 DVALSIAAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIPSY 353
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP +K++ LGGKLG +L E V+T ++Q +G N W++ + RGI
Sbjct: 354 LRPLPFRKIRFLGGKLGEALAKEYDVST----------EMQNKFGEN-AIWVYEVLRGID 402
Query: 170 GEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 227
EV+ + + KS + K+ P P +K + HW+ L EL+ RL E+N +
Sbjct: 403 RNEVKEKGKVNKSMLASKNLPKP--IKNTSEGHHWIRVLAAELALRLNDAREENPNLWPK 460
Query: 228 TLTLHASAFKSSDSDSRKKFP 248
TL LHA + FP
Sbjct: 461 TLVLHARRAYDDGRSKQAPFP 481
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 15/250 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
D K L+ LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TV
Sbjct: 105 AYLDVTTNKKNLSSATLIAEQIRSKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTV 164
Query: 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
P S V L+ L +KK + GK+ + G+ T DL S ++LQ +G N+G +
Sbjct: 165 PPSKVLSFLEGLDVKKFYGI-GKVTAEKMYQKGIFTGADLRAKSLEELQSYFG-NSGEYF 222
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+ IARGI VQ L KS G +F K ++S + ++ + ++LSE + L +
Sbjct: 223 YQIARGIHLSPVQPFRLIKSIGVEHTFE-----KNISS-EIFMTEPLQQLSEEVSLRLSK 276
Query: 222 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGS 279
K +A T+TL K SD + + S++ P G + L+Q LRE +
Sbjct: 277 KKLLAKTVTL-----KLKYSDFKIQTRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRL 331
Query: 280 FGVKTQGSHY 289
GV +Y
Sbjct: 332 LGVSLSNFNY 341
>gi|426199305|gb|EKV49230.1| hypothetical protein AGABI2DRAFT_184029 [Agaricus bisporus var.
bisporus H97]
Length = 672
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ ++ E R QV +E +T SAGIA NK LAKL + KP Q+ + ++
Sbjct: 293 DVALSIAAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIPSY 351
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP +K++ LGGKLG +L E V+T ++Q +G N W++ + RGI
Sbjct: 352 LRPLPFRKIRFLGGKLGEALAKEYDVST----------EMQNKFGEN-AIWVYEVLRGID 400
Query: 170 GEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 227
EV+ + + KS + K+ P P +K + HW+ L EL+ RL E+N +
Sbjct: 401 RNEVKEKGKVNKSMLASKNLPKP--IKNTSEGHHWIRVLAAELALRLNDAREENPNLWPK 458
Query: 228 TLTLHASAFKSSDSDSRKKFP 248
TL LHA + FP
Sbjct: 459 TLVLHARRAYDDGRSKQAPFP 479
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + LI E+R ++L+ET T SAGI+ NK +AK+AS NKP Q TVP
Sbjct: 112 LDVTANRKGMPSATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPP 171
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V+ L+SL I+K + GK+ N LG+ T DL + SE L +G +G +
Sbjct: 172 EDVQEFLESLEIRKFHGV-GKVTAEKMNALGIFTGADLRRQSEHFLTGHFG-KSGHHYYR 229
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
+ RG+ VQ +PKS G+ ++F L + + L ++ EELS RL + K
Sbjct: 230 VVRGVHDSPVQPSRVPKSLGAERTF--SENLSSEVFMVEKLTKIAEELSRRLRTRNRSGK 287
Query: 224 RIAHTLTLHASAF 236
I TL + S F
Sbjct: 288 TI--TLKIRYSDF 298
>gi|171676163|ref|XP_001903035.1| hypothetical protein [Podospora anserina S mat+]
gi|170936147|emb|CAP60807.1| unnamed protein product [Podospora anserina S mat+]
Length = 696
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 3/189 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D L IV +R + ++ ++CSAG++ NK+L+KL S KP QQT +
Sbjct: 238 DPDWDDVALLVASEIVRNVRGVIREKLGYSCSAGVSRNKLLSKLGSAHKKPDQQTVIRNR 297
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V L K++ LGGKLG + + V DLL ++L++ G G W++
Sbjct: 298 AVGHFLSGFKFTKIRNLGGKLGEQVADAFKTEAVSDLLTVPIEQLKQKLGDENGVWIYET 357
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNK 223
RGI EV + KS S KSF + TV WL ++ RL + + ++K
Sbjct: 358 LRGIDTSEVNSGTQIKSMLSAKSFRPD--ITTVEQATKWLRIFAADIFARLVEEGVLEHK 415
Query: 224 RIAHTLTLH 232
R T+ LH
Sbjct: 416 RRPKTINLH 424
>gi|299749828|ref|XP_001836363.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298408617|gb|EAU85452.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 669
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 4 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 63
+ P S + EEA+ H GL+ DG D+ T W D L+ +V +
Sbjct: 238 DQPSTSKQQPAEEAV--HDEGLQ--DGEDANTT---W--------HDVALSIAAGMVMKA 282
Query: 64 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 123
R VL++ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++ LGG
Sbjct: 283 RKGVLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRFLGG 342
Query: 124 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR---GISGEEVQAR--LL 178
KLG +L E TVGDLL S D++Q +G ++ W++ I R GI EV+ + L
Sbjct: 343 KLGRALAQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRQYSGIDRSEVKDKGTTL 401
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS + K+ P P + + HW+ L EL+ RL
Sbjct: 402 TKSMLASKNLPKP--ITAASEGYHWIRVLAAELALRL 436
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 8/205 (3%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K LI TE+R ++ ++T T SAGI+ NK +AK+AS NKP Q TV F
Sbjct: 114 LDVTHNKKNCPSATLIATEIRQKIYEKTGLTASAGISINKFVAKIASDFNKPNGQKTVSF 173
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V+ LD L +K+ + GK+ T G+ T DL S L+E +G N + +
Sbjct: 174 DEVQDFLDVLDVKRFYGI-GKVTTEKMYLKGIFTGKDLRNKSLSFLEEHFG-NHAIYYYQ 231
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
+ARGI EV+ LPKS G+ ++F + + + ++ L + +EL ER+ K
Sbjct: 232 LARGIHLSEVKPLRLPKSVGAERTF--SKNITSEVFMEKDLYAIAQELHERMAKKGVSGK 289
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFP 248
I TL + S F S K FP
Sbjct: 290 TI--TLKIKYSDF--SVQTRSKTFP 310
>gi|169623303|ref|XP_001805059.1| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
gi|160704960|gb|EAT77740.2| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
Length = 652
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D D IV ++R + ++ +TCS G+A NKMLAKL SG KP QQT +
Sbjct: 231 DPDWDDVCTVIASEIVRDVRKNIKEKLGYTCSGGVAKNKMLAKLGSGYKKPNQQTVIRNR 290
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
++K L + K++ LGGKLG G V L++ ++L++ G +TG+WL+NI
Sbjct: 291 AIKHFLSDMKFTKIRMLGGKLGDEAVAMFGTDLVKSLMEQPLEQLKK-LGDDTGSWLYNI 349
Query: 165 ARGISGEEVQARLLPKSHGSGKSF 188
RG EV R KS S KSF
Sbjct: 350 IRGEDHSEVNPRTQIKSMLSAKSF 373
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 107/188 (56%), Gaps = 11/188 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I ++ V + T TCSAG+++NK LAK+ASGMNKP T + +++V+ +LD+LPI +
Sbjct: 122 IAASIKHDVYETTHLTCSAGVSYNKFLAKIASGMNKPNGLTVIHYNNVQQILDALPIGEF 181
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK+ ++L + T DL + SE +L E +G G+ L+N ARGI + ++
Sbjct: 182 PGV-GKVTEQKMHKLKIATGKDLRQLSEIELIEQFG-KKGSSLYNKARGIGTDIIEVERE 239
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G +F + + + ++ ++ E +E++ + L+ ++A T+T+ K+
Sbjct: 240 RKSIGKETTFAHDK------NDESYILRVMNEQTEKVAAKLQSMNKVADTITV---KIKT 290
Query: 239 SDSDSRKK 246
SD +S K
Sbjct: 291 SDFESHTK 298
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 13/210 (6%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K L LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP
Sbjct: 107 LDVTTNKKDLPSATLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPP 166
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ L L IKK + GK+ + G+ T DL S ++LQ +G N G + +
Sbjct: 167 QEILDFLAPLDIKKFYGI-GKVTAQKMYQKGIFTGADLRAKSLEELQTYFG-NNGEYFYQ 224
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
IARGI VQ L KS G +F +T + + +L + +EL E + L++ K
Sbjct: 225 IARGIHLSAVQPFRLRKSIGVEHTF------ETNITSERFLEKPLKELCEEVALRLKEKK 278
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCP 253
+A T+TL K SD +++ S+S P
Sbjct: 279 LLAKTVTL-----KLKYSDFKQQTRSRSIP 303
>gi|302767294|ref|XP_002967067.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
gi|300165058|gb|EFJ31666.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
Length = 332
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
Query: 46 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
A D LL G + E+R V KET + CS GI+HNKMLAK+A +NKP +QT + S+
Sbjct: 127 ATQGDLLLMVGTQLAAEIRCAVEKETGYQCSCGISHNKMLAKMACSLNKPDKQTCITQSA 186
Query: 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 165
V + LP++K+ +G + +L+ E+GV T+GD+ + +L +G G L++
Sbjct: 187 VNDFIVPLPVRKIPGVGRQTEATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDAC 245
Query: 166 RGISGEEVQARLLPKSHGSGKSFPGPRALK-------------TVASVQHWLNQLCEELS 212
RG VQ + KS SF +L T +Q L+ L +L
Sbjct: 246 RGHDYSRVQDKGFSKSLSVEDSFKPCSSLDQAKVRLNSSCIRVTSVCLQEILSCLAPDLI 305
Query: 213 ERLCSDLEQNKRIAHTLTL 231
RL D + +R T T+
Sbjct: 306 ARLDEDKAETERTPKTFTV 324
>gi|168024165|ref|XP_001764607.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684185|gb|EDQ70589.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D+ L G +I +R V E +T S +P +V GL
Sbjct: 184 DRRLLAGSIIADRMRASVRNELGYTIS-----------------------VIPPRAVPGL 220
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+ +LP+KK+K LGGKLG + + G TT G+ + L +G GT+ W +G+
Sbjct: 221 MKALPLKKIKLLGGKLGEEMTKKWGCTTAGEAQQIPHAALVACFGDRLGTYAWKAVQGLK 280
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
E+VQ + L KS + KSF A+ +A ++ WL+ L +L+ R+ D E N+R
Sbjct: 281 AEQVQVKDLVKSMLASKSFG---AINELAGIRRWLSVLSHDLAIRMSRDFEMNQRQPKVF 337
Query: 230 TLH--ASAFKSSDSDSR 244
L+ + FK+S SR
Sbjct: 338 QLYYRSGKFKNSADHSR 354
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 13/238 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP V L
Sbjct: 116 MPSATLIAQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPPEEVLDFLAQ 175
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
L IKK + GK+ + G+ T DL + ++LQE +G N G + + IARGI
Sbjct: 176 LDIKKFYGI-GKVTAQKMYQKGIFTGADLRAKTLEELQEYFG-NNGEYFYQIARGIHLSP 233
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
VQ L KS G +F + + ++ L +LCEE+++RL K + TL L
Sbjct: 234 VQPFRLVKSIGVEHTFET--NISSEIFMEEPLKKLCEEVAQRLAKKQLLAKTV--TLKLK 289
Query: 233 ASAFK-SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 289
S FK + S + F S + +++ L+Q LRE + GV +Y
Sbjct: 290 YSDFKQQTRSRTLIDFVGDSATIYQVISEL------LYQERLRESVRLLGVSLSHFNY 341
>gi|410931299|ref|XP_003979033.1| PREDICTED: DNA polymerase eta-like, partial [Takifugu rubripes]
Length = 245
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G LIV E+R V K T F CSAGI+HNK+LAKLA G+NKP +QT +P SV+ L S
Sbjct: 172 LTVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPLDSVRDLFSS 231
Query: 113 LPIKKMKQLGGKLG 126
LP+ K++ LGGKLG
Sbjct: 232 LPVGKIRNLGGKLG 245
>gi|403337853|gb|EJY68151.1| DNA polymerase eta [Oxytricha trifallax]
Length = 606
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
+K L I +R + +E ++ S GI+HNK +AKLAS NKP QT VP +K
Sbjct: 248 EKKLFIANQIAYSIRQDIKRELQYNASCGISHNKTMAKLASANNKPNAQTVVPIRYMKRA 307
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
+ + I ++ GGK+G SL N G+TT+G + + S + LQ +T W+ +++ GI
Sbjct: 308 MKDVKIDSVRFCGGKVGESLHNA-GLTTMGQIQETSIEDLQLIVSQSTAQWIKDLSDGIC 366
Query: 170 GEEVQARLLPKSHGSGKSF 188
EEV+ R LP + + K+F
Sbjct: 367 YEEVKERNLPTTANAVKTF 385
>gi|361128232|gb|EHL00178.1| putative N-acetyltransferase eso1 [Glarea lozoyensis 74030]
Length = 298
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ G IV +R V ++ ++TCS G+A NKMLAKL S KP QQT V +V+ L
Sbjct: 180 ILIGSEIVRNVRAAVREKLKYTCSGGVAQNKMLAKLGSAHKKPNQQTIVRNRAVQQFLSD 239
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 167
L K++ LGGKLG + + V DLL ++L++ G +TGTW++ I RG
Sbjct: 240 LKFTKIRGLGGKLGEQITSSFNTDNVKDLLPIPIEQLKQKLGDDTGTWVYQIIRG 294
>gi|134112233|ref|XP_775092.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257744|gb|EAL20445.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 708
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G +++ +R +V +TC+AGIAHNK +AKL S KP QT + ++V
Sbjct: 247 DWALCMGGELMSNVREEVYLRLHYTCTAGIAHNKAMAKLCSAWKKPNNQTILRTAAVPAF 306
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L+ ++ LGGKLG ++ + G T + S D++Q +G W++NI RGI
Sbjct: 307 LNGRDFTDIRSLGGKLGAAIAQQFGAKTRRTV---SLDEMQRKFG-EESIWVYNILRGID 362
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
EV R+ KS + KS A+ + WL+ L EL+ RL
Sbjct: 363 HSEVTDRVATKSMLASKSIRP--AVTSPQQGHQWLSILAGELNVRL 406
>gi|348670497|gb|EGZ10319.1| hypothetical protein PHYSODRAFT_522191 [Phytophthora sojae]
Length = 527
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 36/213 (16%)
Query: 41 LCRCDADHRDKLLAC-GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
C+ A+H K L C G +I E+R + + +TCS G+A NK+LAKLAS +NKP Q
Sbjct: 147 FCQDPANHDTKRLLCIGAVISREIRQAIYSKLGYTCSTGVAGNKLLAKLASPLNKPNGQV 206
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN------ELGVTTVGDLLKFSEDKLQESY 153
V V L+ SLP++K++ LGGKLG L+ +L T +E L +
Sbjct: 207 VVAPRFVADLMKSLPMRKVRGLGGKLGKQLETAKDAFKKLSAHTFLQRCGLAE--LTKHV 264
Query: 154 GFNTGTWLWNIARGISGEE------VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 207
G T ++ I +G G E VQ ++L G +W+ L
Sbjct: 265 GQETAAYVHQICQGDDGNEPVEEKKVQVKML----GC-----------------YWVRLL 303
Query: 208 CEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
CEE+ R + +NKR LT+ + K D
Sbjct: 304 CEEMVMRCEDERVENKRFPSQLTIQFTRAKPGD 336
>gi|170098863|ref|XP_001880650.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644175|gb|EDR08425.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 629
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ--TTVPFSSVK 107
D L+ ++ R QVL++ ++ SAGIA NK LAKL + KP Q + + +++
Sbjct: 265 DVALSIAAELMGSARAQVLQKLGYSTSAGIARNKFLAKLTASYKKPNSQAGSILRNAAIP 324
Query: 108 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 167
L + +K++ LGGKLG + E +TV L D +Q +G W++ + RG
Sbjct: 325 NYLKPIAFRKIRFLGGKLGKAFAQEYDASTVTPL-----DDMQNKFG-EESIWVYEVLRG 378
Query: 168 ISGEEVQAR--LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
I EV+ + +L KS + K+ P P +K + HW+ L EL+ RL +++ +
Sbjct: 379 IDRAEVKDKGSVLNKSMLASKNLPKP--IKNASEGHHWIRVLAAELALRLNDARKESPNL 436
Query: 226 -AHTLTLHASAFKSSDSDSRKKFP 248
TL LHA + + FP
Sbjct: 437 WPKTLVLHARKGYEAGRSKQAPFP 460
>gi|210620712|ref|ZP_03292198.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
gi|210155213|gb|EEA86219.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
Length = 326
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D K + +I ++ + +ET T SAG+++NK +AKLAS KP T +
Sbjct: 110 DVTENKKKIKSATIIAKLIKEDIKRETGLTASAGVSYNKFVAKLASDYQKPNGLTVITED 169
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+V+ LD+LP+KK +G L+N G+ T DL S +KL++ + N G L+N
Sbjct: 170 NVQEFLDTLPVKKFFGVGKVTERVLKNN-GINTGYDLRNTSLEKLEKIFK-NRGLELYNF 227
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
ARGI V + KS G+ + + + +V L++LCEE++ER+ + +
Sbjct: 228 ARGIDNRPVNPTRIRKSIGAETTLIENKNIDDAETVM-ILDELCEEVAERMAKE----DK 282
Query: 225 IAHTLTL 231
+A T+TL
Sbjct: 283 VAKTITL 289
>gi|390600437|gb|EIN09832.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 634
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 104/217 (47%), Gaps = 15/217 (6%)
Query: 44 CDA--DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
CDA D L+ ++ ++R + + +T SAGIA NK LAKLA+ KP QT +
Sbjct: 244 CDAATTWHDVALSLAAELMQKIREDIHTKLGYTTSAGIARNKFLAKLAASYRKPMSQTIL 303
Query: 102 PFSSVKGLLDSLPIKK--MKQLGGKLGTSLQNELGVTTVGDLLKFS-EDKLQESYGFNTG 158
S++ L + +K ++ LGGKLG +L E TTVGDLL S D +Q +G
Sbjct: 304 RNSAIPNYLRPMKFQKVSIRNLGGKLGEALAQEFDATTVGDLLNVSLADVMQRKFG-EES 362
Query: 159 TWLWNIAR-----GISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 212
W++ I R GI EV+ + ++ KS + K+ P A + HW+ L EL+
Sbjct: 363 LWVYEILRYNTRFGIDRSEVKEKSIVNKSMLASKNLATPVAKPSEG--HHWIRVLAAELA 420
Query: 213 ERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 248
RL E + TL LH + + FP
Sbjct: 421 LRLNEARESRPGLWPKTLVLHVRQGYAQSRSKQGPFP 457
>gi|302755030|ref|XP_002960939.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
gi|300171878|gb|EFJ38478.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
Length = 294
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 46 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
A D LL G + E+R V KET + CS GI+HNKMLAK+A +NKP +QT + S+
Sbjct: 140 ATQGDLLLMVGTQLAAEIRCAVEKETGYQCSCGISHNKMLAKMACSLNKPNKQTCITQSA 199
Query: 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 165
V + LP+ K+ +G + +L+ E+GV T+GD+ + +L +G G L++
Sbjct: 200 VNDFIVPLPVCKIPGVGRQTEATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDAC 258
Query: 166 RGISGEEVQARLLPKSHGSGKSF 188
RG VQ + KS SF
Sbjct: 259 RGHDYSRVQDKGFSKSLSVEDSF 281
>gi|358348542|ref|XP_003638304.1| hypothetical protein MTR_126s0013 [Medicago truncatula]
gi|355504239|gb|AES85442.1| hypothetical protein MTR_126s0013 [Medicago truncatula]
Length = 201
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 471 PLGDC--LSESNKKQVNIPKERLDNSTGD---CLSESNQNQVNIPKERLAEAATTSTSTD 525
P G+C N Q + ++ + N+ G S NQV IP E + T+
Sbjct: 83 PQGNCSITKFFNNSQSSFEQKNVTNTQGSQSASASYLTSNQVEIPAEGVG------TNNS 136
Query: 526 RCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYF 585
C D + Q S++W I+EIDPS+IDELP EIQDE + WLRP KRP+ VK+G +I YF
Sbjct: 137 GCSVDNMPQGSQAWSYNIDEIDPSIIDELPPEIQDEFRTWLRPRKRPNVVKRGSSITQYF 196
Query: 586 SPSK 589
P +
Sbjct: 197 RPDR 200
>gi|312373689|gb|EFR21388.1| hypothetical protein AND_17125 [Anopheles darlingi]
Length = 281
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 64/95 (67%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G IV E+R V ++T + CSAG+AHNK+LAKL +G +KP +QT +P S+ L
Sbjct: 169 DIKLLVGASIVNEIRAAVKEKTGYECSAGVAHNKILAKLTAGFHKPNKQTILPIESIAKL 228
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 144
++LP+KK+K LGGKLG + L + + +L++F
Sbjct: 229 YETLPVKKVKGLGGKLGDQVCELLKIKFMSELVQF 263
>gi|403162637|ref|XP_003322823.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173018|gb|EFP78404.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 366
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L G ++ R QV +TCSAGIA NKMLAKL S KP QT + +V+
Sbjct: 131 DIALLIGTELMARCRQQVFDRLGYTCSAGIATNKMLAKLCSAYKKPNAQTVLRAGAVRDF 190
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE------DKLQESYGFNTGTWLWN 163
L + K++ LGGKLG S+ +EL +T L + S+ +LQ S G TG W+W
Sbjct: 191 LRPFELSKLRFLGGKLGQSV-SELVDSTCDKLCQLSKVWKVPLSQLQASLGEQTGMWVWE 249
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
++ EV+ + L KS S K+
Sbjct: 250 SVHDVNRSEVETKTLVKSMMSSKNL 274
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +E+R ++L T T SAGI++NK LAK+AS +NKP Q +P + + LP+KK
Sbjct: 122 IASEIRARILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPPKTGPSFIQRLPVKKF 181
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + ++LG+ T DL + S + L + +G G + + IARGI +VQ
Sbjct: 182 HGVGPATAEKM-HQLGIETGADLKQRSFEFLSQHFG-KAGAYFYGIARGIDNRDVQPDRK 239
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
KS G+ +FP + V ++ QL L ++C N A T+TL F
Sbjct: 240 RKSIGAEDTFP-----EDVFELETAREQL-HPLVSKVCQFCSNNDTGAKTVTLKVKYF 291
>gi|449438635|ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1155
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 9/242 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ +++R ++ T T SAGIA N ++A+LA+ KP Q +P V L+ LPIK
Sbjct: 549 VLASKIRKEIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDDYLNPLPIKD 608
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L+ V T L S+D LQ+ +G TG LWN +RG+ V L
Sbjct: 609 LPGIGHALEEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVG--L 665
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ +S G K Q +L LC+E+S RL Q + T TL +
Sbjct: 666 IQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLNGCGVQGR----TFTLKIKKRR 721
Query: 238 SSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 295
+ + K C L + T + D + Q +++ G F + + G +++
Sbjct: 722 KNADEPTKYMGCGDCENLSHSLTVPVATDDLEILQRIVKQLFGFFVIDVKEIRGIGLQVS 781
Query: 296 AL 297
L
Sbjct: 782 KL 783
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 11/225 (4%)
Query: 7 PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQ 66
P D E ++K + LE D + + + +L D K LI +++R +
Sbjct: 78 PPRFDRYREISMKIRAIFLEYTDLVEPLSLDEAYL---DVTENKKGNPSATLIASQIRER 134
Query: 67 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 126
+ ++T CSAGI+ NK +AK+AS NKP Q TV V L++L I+K + GK+
Sbjct: 135 IFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFLEALDIRKFYGV-GKVT 193
Query: 127 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 186
+LG+ T DL K + L E +G +G+ +N+ RGI V+ +PKS G+ +
Sbjct: 194 AQKMYQLGIFTGLDLKKKPIEFLNEHFG-KSGSLYYNVVRGIHNSPVKPDRVPKSVGAER 252
Query: 187 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+F + ++S L +L E LS L L +NK T+TL
Sbjct: 253 TFT-----ENLSSEVFMLERL-EHLSVELEQRLRKNKVAGKTITL 291
>gi|354806700|ref|ZP_09040181.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
gi|354514884|gb|EHE86850.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
Length = 376
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA + +V ++ ++LKET+ SAGI++NK LAK+AS KPA +T V L
Sbjct: 134 LAHTIDVVAYIQKEILKETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSR 193
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K + +G K +Q ELG+ T DLL+ SE L +++G G L+ RGI
Sbjct: 194 LPIEKFRGVGKKTAPRMQ-ELGILTGADLLEQSEMMLMQNFG-KLGYGLYRHVRGIDNRP 251
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V + KS G+ ++ P L + VQ L +L EL R L +N++ T+ L
Sbjct: 252 VAYQRERKSIGNENTYGQP--LISEEQVQVELKKLAIELERR----LRKNQKHGLTVVLK 305
Query: 233 ASAFKSSDSDSRKKF 247
+ RK F
Sbjct: 306 VRNRQFETITKRKTF 320
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 13/212 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
D K ++ +I E+R ++ E T SAGI+ NK +AK+AS NKP Q TV
Sbjct: 110 AYLDVTQNKKNMSSATMIAAEIRQKIFIELGLTASAGISINKFVAKIASDYNKPNGQKTV 169
Query: 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
+ V L+ LPIKK + GK+ T +LG+ T DL S D L++ +G +GT+
Sbjct: 170 APNEVLLFLEQLPIKKFYGV-GKVTTEKMYQLGIFTGLDLKSKSLDFLEKHFG-KSGTFY 227
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+++ RG+ EV+A + KS + +F L + + L+++ EL R L++
Sbjct: 228 YHVVRGVHNGEVKANRIAKSVAAEHTF--DINLTSEIFMLEKLSKIANELERR----LQK 281
Query: 222 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCP 253
+++ T+TL K SD ++ SK+ P
Sbjct: 282 HQKAGKTVTL-----KIKYSDFTQQTRSKTLP 308
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ KS G+ ++F P L + + L+ + E+++ RL
Sbjct: 230 IRKSVGAEETF--PENLTSEVYMLRELDHIAEDVARRL 265
>gi|79529581|ref|NP_199288.4| DNA repair protein REV1 [Arabidopsis thaliana]
gi|59796995|dbj|BAD89586.1| deoxycytidyl transferase [Arabidopsis thaliana]
gi|332007773|gb|AED95156.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1101
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 9/242 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ + +R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+
Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGT 551
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 552 LPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQ 610
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++ G R + VQH+L LC+E+S R L+ + I T TL K
Sbjct: 611 ESKSIGAEVNW-GVR-FRDQQDVQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKKRK 664
Query: 238 SSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 295
+ K C R T D + Q ++ GSF + + G +++
Sbjct: 665 KDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVS 724
Query: 296 AL 297
L
Sbjct: 725 KL 726
>gi|68469717|ref|XP_721110.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
gi|46443012|gb|EAL02297.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
Length = 640
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D G I+ E+R + +E +T SAG+A K +AKLA+G KP QT + S++
Sbjct: 242 DWDDICFIIGSQILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAI 301
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWL 161
L + + + +GGKLG S+ N++ V + + FS+ ++E G G +
Sbjct: 302 NSFLTNFELTDVTGMGGKLGESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKV 361
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+NI RGI+ E+Q+ + KS S K+F + + WL +L RL +
Sbjct: 362 YNIVRGINAIELQSTIEVKSMTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLIDLDNE 420
Query: 222 NKRIAHT 228
N ++ T
Sbjct: 421 NMELSST 427
>gi|68469958|ref|XP_720989.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|46442884|gb|EAL02170.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|238882146|gb|EEQ45784.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 640
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D G I+ E+R + +E +T SAG+A K +AKLA+G KP QT + S++
Sbjct: 242 DWDDICFIIGSQILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAI 301
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWL 161
L + + + +GGKLG S+ N++ V + + FS+ ++E G G +
Sbjct: 302 NSFLTNFELTDVTGMGGKLGESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKV 361
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+NI RGI+ E+Q+ + KS S K+F + + WL +L RL +
Sbjct: 362 YNIVRGINAIELQSTIEVKSMTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLIDLDSE 420
Query: 222 NKRIAHT 228
N ++ T
Sbjct: 421 NMELSST 427
>gi|124007421|ref|ZP_01692127.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
gi|123987077|gb|EAY26826.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
Length = 325
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ +I E++ ++ T+ T SAGI+ NK LAK+AS M+KP T + +
Sbjct: 115 MPSATIIAREIKQKIFDATQLTASAGISVNKFLAKVASDMDKPNGLTLISPEEAADFVAK 174
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPIKK +G +Q +LG+ T DL ++ + KL +G G + +NIA+GI
Sbjct: 175 LPIKKFHGIGKVTAKKMQ-QLGIFTGADLRRWDKAKLVRQFG-KVGNYYFNIAQGIDQRS 232
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V + KS + +F L ++ ++ L+QL EEL R +E+ K T+TL
Sbjct: 233 VNPHRIRKSISTENTF--DHDLASLEEMETALHQLAEELMRR----MEKTKSFGQTITL 285
>gi|301093411|ref|XP_002997552.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110570|gb|EEY68622.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 525
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 40 WLCRCDADHRDKLLAC-GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 98
+ C+ A+H K L C G +I E+R + + +TCS GIA NK+LAKLAS +NKP Q
Sbjct: 144 YFCQDPANHDTKRLLCIGAVISREIRQAIYNKLGYTCSTGIAGNKLLAKLASPLNKPNGQ 203
Query: 99 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 158
V V L+ SLP++K++ LGGKLG L+ T G+ K KL ++ F
Sbjct: 204 VVVASRFVIDLMKSLPMRKIRGLGGKLGKQLE------TAGESFK----KL-SAHTFLQR 252
Query: 159 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
L +A+ + G+E A + GS + P K V + LCEE+ R +
Sbjct: 253 CGLIELAKHV-GQETAAYVHSICQGSDDNEPVEE--KKVQVKITGVRLLCEEVVIRCEDE 309
Query: 219 LEQNKRIAHTLTLH 232
+NKR L++
Sbjct: 310 RIENKRFPSQLSIQ 323
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 13/212 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
D H K LI +E+R ++LK T SAGI+ NK +AK+AS +NKP Q T+
Sbjct: 110 AYLDVTHHKKGNPSASLIASEIRTEILKLTGLHASAGISINKFVAKIASDINKPNGQKTI 169
Query: 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
P V L++L I+K + GK+ LG+ T DL SED L+ +G +G +
Sbjct: 170 PPEEVLSFLENLDIRKFFGI-GKVTADKMYGLGIFTGADLKLKSEDFLETHFG-KSGRYF 227
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+ RG+ EV + KS G+ ++F + + ++ + L EELS+RL +
Sbjct: 228 YRAVRGVHHSEVSPERIQKSVGAERTF--NENISSEVFLEGKIIALAEELSKRLG----R 281
Query: 222 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCP 253
+K T+TL K +D +++ + SK+ P
Sbjct: 282 SKLSGKTITLK---LKYADFNTQTR--SKTLP 308
>gi|366090384|ref|ZP_09456750.1| DNA polymerase IV [Lactobacillus acidipiscis KCTC 13900]
Length = 367
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ ++ + TCSAGI++NK LAKLAS KP T V V+ L L I+K + +G
Sbjct: 131 IQQEIFTKVHLTCSAGISYNKFLAKLASDYRKPVGITLVRQDEVQDFLFPLAIEKFRGVG 190
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
K + ++LGV T DL + S +L +G G L+ RGI V+ + + KS
Sbjct: 191 KKTVPKM-HQLGVFTGKDLYQLSSGELISHFG-KMGYILYQRVRGIDERPVEWQRIRKSL 248
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
G+ ++F P L TVASV+++L ++ ++RL +L+Q ++ TL +
Sbjct: 249 GNERTFDRP--LTTVASVENFL----QKSAKRLADELDQQQKHGKTLVI 291
>gi|213410204|ref|XP_002175872.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
gi|212003919|gb|EEB09579.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
Length = 884
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 2/178 (1%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D + L G IV E+R ++ +TCSAGI+ N ML+K+ S NKP +QT + S V
Sbjct: 210 DWDEVFLHYGARIVKEIRNEIFNTLGYTCSAGISRNAMLSKILSSKNKPNKQTVLLNSMV 269
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
L + + +++ GGK G L +L + D+ D+L G +WN+
Sbjct: 270 DHYLADVRLSELRLFGGKYGEELGKKLNAEYIKDIRAIPMDELIRILGDRDAQVVWNVCN 329
Query: 167 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
GI E+ +S S K+F + LK+ W +L R D+EQ KR
Sbjct: 330 GIDNSEITNVNNTQSMLSAKNFLRSK-LKSSEEAMKWFRVFASDLMSRYM-DVEQIKR 385
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++LK+ T SAGI+ NK +AK+AS NKP Q TVP V L++L I+K
Sbjct: 126 LIAEEIRAKILKDVGLTASAGISINKFIAKVASDYNKPNGQKTVPPEEVLDFLEALDIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ T DL D L E +G +G + +N+ RGI EV+
Sbjct: 186 FYGV-GKVTAERMYQLGIFTGKDLKTKDVDFLTEHFG-KSGKFYFNVVRGIHLSEVKPNR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ KS G+ ++F L + + L + EL +RL
Sbjct: 244 IAKSVGAERTFSD--NLTSEIFMLEKLENIANELEKRL 279
>gi|428179324|gb|EKX48195.1| DNA polymerase eta, replication coupled repair, partial [Guillardia
theta CCMP2712]
Length = 242
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 18 LKSHILGLESKDGNDSKATVKEWLCRCD----ADHRDKLLACGVLIVTELRMQVLKETEF 73
L I LE D + K + E R D A D L G +I R VL+ T F
Sbjct: 129 LYRRIFDLEQNDAD--KHGLNETNDRFDEINTAKEEDLKLLLGAVICQAARAGVLEHTSF 186
Query: 74 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 129
TCS GI+HNKML+KLAS +KP QQT VP V+ L++ LP+K ++ LGGK G L
Sbjct: 187 TCSGGISHNKMLSKLASARHKPNQQTIVPVQGVQSLMEQLPLKNIRGLGGKFGNQL 242
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + ET T SAGI+ NK +AK+AS +NKP Q TV ++ LD+L +KK
Sbjct: 112 LIAQEIRQAIFAETGLTASAGISINKFIAKIASDVNKPNGQKTVTQDEIQDFLDALNVKK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ LGV T DL + S L+ ++G N+G + +ARGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYALGVFTGKDLRQKSLAFLERNFG-NSGKHYYQLARGIHNGEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F + + S + L +L + ++ + L Q K TLT+
Sbjct: 230 IRKSVGAEQTFA-----ENLTSEIYMLKEL-DSIASEVAMRLAQQKVAGKTLTI 277
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLDRLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRSEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 230 IRKSVGAEETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 277
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 121 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLDRLDVRK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 181 FYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRSEVQPFR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 239 IRKSVGAEETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 286
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+RM++L+ T T SAGI+ NK LAK+AS NKP Q T+ V L+ L IKK
Sbjct: 121 LIAHEIRMKILERTGLTASAGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G K + + LG+ T DL S + L E +G G ++I RG+S V+
Sbjct: 181 FFGIGKKTADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G+ ++F L + ++ L+ L EELS RL
Sbjct: 239 TIKSVGTERTF--DENLSSEVFIETKLDMLVEELSLRL 274
>gi|449495749|ref|XP_004159933.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1032
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ +++R ++ T T SAGIA N ++A+LA+ KP Q +P V L+ LPIK
Sbjct: 464 VLASKIRKEIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDDYLNPLPIKD 523
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L+ V T L S+D LQ+ +G TG LWN +RG+ V L
Sbjct: 524 LPGIGHALEEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVG--L 580
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ +S G K Q +L LC+E+S RL
Sbjct: 581 IQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRL 618
>gi|448513234|ref|XP_003866901.1| Rad32 protein [Candida orthopsilosis Co 90-125]
gi|380351239|emb|CCG21463.1| Rad32 protein [Candida orthopsilosis Co 90-125]
Length = 671
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D +LA G ++ +LR + E +T SAG+A NK++AKL+ G KP QT V ++
Sbjct: 236 DWDDVVLAIGSELLLDLRQSIHDELGYTTSAGLARNKLVAKLSGGFKKPDDQTIVRNCAL 295
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT--------- 157
L++ + + +GGKLG L N GV + + F ++E+Y ++
Sbjct: 296 NRFLNNFELTDVTGMGGKLGEQLINRFGVPPDRNSIAF----IRENYSLSSVKEEIKEDP 351
Query: 158 --GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
L+ I RG+ E+ R+ KS S K+F G R T+A WL +LS RL
Sbjct: 352 DLALKLYKIVRGLHPSELTDRVEIKSMMSTKNFLGTRNW-TLADAYDWLTVFSGDLSNRL 410
Query: 216 CSDLEQNKRIAHTLT 230
+DL+ N+ + +LT
Sbjct: 411 -TDLD-NESMELSLT 423
>gi|186529382|ref|NP_001119373.1| DNA repair protein REV1 [Arabidopsis thaliana]
gi|384950720|sp|A3EWL3.1|REV1_ARATH RecName: Full=DNA repair protein REV1; Short=AtREV1; AltName:
Full=Rev1-like terminal deoxycytidyl transferase
gi|125656400|gb|ABN48548.1| polymerase ATREV1-1105 [Arabidopsis thaliana]
gi|332007774|gb|AED95157.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1105
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ + +R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+
Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGT 551
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 552 LPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQ 610
Query: 178 LPKSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 233
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 611 ESKSIGAEVNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKI 664
Query: 234 SAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
K + K C R T D + Q ++ GSF + + G
Sbjct: 665 KKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVG 724
Query: 292 WRITAL 297
+++ L
Sbjct: 725 LQVSKL 730
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ +ET T SAGI+ NK +AK+AS KP QTT+ V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFEETGLTASAGISVNKFVAKIASDFRKPNGQTTITADEVQDFLDVLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ ELG+ DL + S L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAQKMYELGIFKGKDLREKSLAFLERNFG-NSGLYFYELSRGIHRAEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA-HTLTL 231
+ KS G+ +F + ++ L+ + E+++ RL Q + +A T+TL
Sbjct: 230 IRKSVGAEHTF--AENFTSEIYMEEALSAIAEDVARRL-----QRQEVAGRTITL 277
>gi|358340778|dbj|GAA48604.1| DNA polymerase eta subunit [Clonorchis sinensis]
Length = 452
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 92 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 151
M Q+ + FS + + P+ + LGGKLG ++ G+ T+G L + S +L E
Sbjct: 1 MEHVRSQSGLTFSPLS--FEIFPVYFRRNLGGKLGVAIMERFGIQTLGQLTEISLTQLTE 58
Query: 152 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
+G T WL+ + RG + V R + +S G K+F G L + S+++WL L +EL
Sbjct: 59 VFGEKTAQWLYELCRGHDPDAVTPRSIAQSVGCSKNFVGRSILTSTQSIEYWLRCLSDEL 118
Query: 212 SERLCSDLEQNKRIAHTLTLHA 233
ERL D ++R A LTL+
Sbjct: 119 VERLIDDRRIHQRHATRLTLYV 140
>gi|297794885|ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
gi|297311162|gb|EFH41586.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
Length = 1105
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+ + +R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+
Sbjct: 492 FLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDGLPVGT 551
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 552 LPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQ 610
Query: 178 LPKSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 233
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 611 ESKSIGAEVNWGVRFRDQQDVCIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKI 664
Query: 234 SAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
K+ + K C R T D + Q ++ GSF + + G
Sbjct: 665 KKRKNDAEEPTKYMGCGDCDNLSRSITVPAATDDVEVLQRISKKLFGSFCLDVKEVRGVG 724
Query: 292 WRITAL 297
+++ L
Sbjct: 725 LQVSKL 730
>gi|83647018|ref|YP_435453.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
gi|83635061|gb|ABC31028.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
Length = 356
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
Query: 54 AC---GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
AC LI E+R +V ++ T SAG+A NK LAK+AS NKP + VK +
Sbjct: 114 ACKGSATLIAEEIRARVRQDLRLTVSAGVAPNKFLAKIASDWNKPDGIFVIRPQDVKDFI 173
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
LP++K+ + GK+ + LG+TT GDL + S+D L+ +G + G L+N++RG+
Sbjct: 174 PQLPVRKINGV-GKVTAAKMEALGITTCGDLQRLSKDDLERHFG-SYGERLYNLSRGVDN 231
Query: 171 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ + KS ++ L+ + ++ L EEL ER
Sbjct: 232 RPVQTEWVRKSLSVEHTY--DHDLQNLDAILDSCEPLFEELLERF 274
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ S V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITESEVQNFLDRLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ +L + S + L+ ++G N+G + + +ARGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGRNLREKSLEFLERNFG-NSGNYYYELARGIHRSEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ KS G+ ++F L + + L+ + E+++ RL
Sbjct: 230 IRKSVGAEETF--AENLTSEVYMLRELDHIAEDVARRL 265
>gi|449542568|gb|EMD33547.1| hypothetical protein CERSUDRAFT_57122 [Ceriporiopsis subvermispora
B]
Length = 628
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D L+ + +R ++ + ++ SAGIA NK LAKL + KP Q+ + +++
Sbjct: 249 DVALSIAAEYMMTIRHEIYTKLGYSLSAGIARNKFLAKLTASYKKPNNQSILRDAAIPNY 308
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL----KFSEDKLQESYGFNTGTWLWNIA 165
L +P +K++ LGGKLG +L E V+TVGDLL KF ED + W++ I
Sbjct: 309 LRPMPFQKIRFLGGKLGKALAQEYDVSTVGDLLSMQRKFGEDSI----------WVYEIL 358
Query: 166 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV----QHWLNQLCEELSERLCSDLEQ 221
R +S QA K KS + L + HW+ L EL+ RL E
Sbjct: 359 RYVS----QAYATCKKSAVNKSMLASKNLLNPVTKPSQGHHWIRVLAAELALRLNEAREN 414
Query: 222 NKRI-AHTLTLHASAFKSSDSDSRKKFP 248
+ T+ LH S + FP
Sbjct: 415 IPTLWPKTIVLHVRQGYDSFRSKQAAFP 442
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ +E T SAGI+ NK +AK+AS NKP Q TV V L+ L I+K
Sbjct: 127 IAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFLEDLEIRKF 186
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK+ T LG+ T DL + S + L E++G +G + +N+ RGI EV+ +
Sbjct: 187 YGV-GKVTTQKMYSLGIFTGKDLKEKSVEFLTENFG-KSGAFYYNVVRGIHLSEVKPNRI 244
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
PKS G+ ++F L + + L + EL RL K I TL + S FK
Sbjct: 245 PKSVGAERTF--SENLSSEVFMLERLESIANELERRLKKSKIAGKTI--TLKIKYSDFK 299
>gi|406888144|gb|EKD34717.1| DNA-directed DNA polymerase [uncultured bacterium]
Length = 335
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 14/177 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ ++R Q+ +E + T SAGI+ NK LAK+AS +NKP T+P L SLPI+K
Sbjct: 91 ILADKIRRQIFRELQLTASAGISFNKFLAKVASDINKPNGIATIPPGKALEFLSSLPIRK 150
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK ++LG+TT DL ++ ED L +G G++ +I RGI V+ +
Sbjct: 151 FYGV-GKATEQKMHQLGITTGYDLRQWQEDNLILHFG-KIGSFFHDIVRGIDNRPVEPQR 208
Query: 178 LPKSHGSGKSFPGPRALKT--VASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTL 231
+ KS G + A+ T + + L L EEL L + KRI +TLTL
Sbjct: 209 IRKSIGCETTL----AIDTDDICKINDILTGLAEELGNSL-----KRKRIGGYTLTL 256
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ + T+ T SAGI+ NK LAK+AS NKP Q T+ V+ L++L IKK
Sbjct: 121 LIAQEIRQKIFERTQLTASAGISINKFLAKVASDYNKPNGQKTINPEEVEAFLEALEIKK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G K + + G+ T DL S D L+E +G G + I RGI V
Sbjct: 181 FFGIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFG-KAGKAYYYIVRGIHNSPVSPDR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
L KS G+ ++F L + +++ L + EELS RL
Sbjct: 239 LTKSVGTERTF--DENLSSEVYLENKLAHIVEELSLRL 274
>gi|307352827|ref|YP_003893878.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156060|gb|ADN35440.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 361
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
E++ ++ TCS GI K++AK+ASGMNKPA T V +++ LD LP+ + +
Sbjct: 134 EIKERIFHAEGLTCSVGIGPGKVIAKIASGMNKPAGMTVVRPDAIRDFLDPLPVDAIPGI 193
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K L+ G+ T+ DLL +L++++G G + +ARGI EV+ + KS
Sbjct: 194 GKKTKVRLEKH-GIVTIKDLLGCDIQELKDAFG-KHGIMMHRLARGIDDSEVREKEGQKS 251
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G ++ P + + + L+ LCE + RL
Sbjct: 252 IGKQTTY--PEDVSDTSILLSDLSDLCENVQNRL 283
>gi|420148930|ref|ZP_14656115.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754419|gb|EJF37809.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 353
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 99/174 (56%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGKDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F ++ + S + L +L + ++E + L++ + T+TL
Sbjct: 230 IRKSVGAEETF-----VENLTSEVYMLREL-DHIAEDVARRLDKQQVAGKTVTL 277
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 15/241 (6%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + LI E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV
Sbjct: 112 LDVTENKKGIPSATLIAQEIREKIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVNP 171
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V+ L+ L I+K + GK+ LG+ L SE+ L E++G +G + +N
Sbjct: 172 EEVEEFLEQLQIRKFYGV-GKVTAEKMYRLGIFKGIQLKDKSEEFLTENFG-KSGKYYYN 229
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
+ RGI EV+A + KS G+ ++F + +AS + ++ + E ++E + L+ +K
Sbjct: 230 VVRGIHNSEVKADRIRKSLGAERTFS-----ENIAS-EIFMMERLENIAEEIERRLKGSK 283
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFG 281
T+TL K SD + SK+ P + + DT LFQ ++ + G
Sbjct: 284 VAGKTVTL-----KIKYSDFTLQTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLLG 338
Query: 282 V 282
+
Sbjct: 339 I 339
>gi|429859010|gb|ELA33810.1| sister chromatid cohesion protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 567
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 139/313 (44%), Gaps = 27/313 (8%)
Query: 54 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 113
+ G IV +R ++ K+ + T SAGI+ NKMLAK AS MNKPA QT + S+ ++ +L
Sbjct: 233 SIGGSIVRHIREEIKKQLQLTTSAGISCNKMLAKAASRMNKPAGQTILRRKSIPIIMPTL 292
Query: 114 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 173
+ LG +LG + G + DLL+ S +++ G G W++N RG V
Sbjct: 293 KATSLSGLGRQLGQKVVKTFGSDNIRDLLQVSLTEMRLQLGAEDGQWVYNAIRGDEKGPV 352
Query: 174 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS-DLE-QNKRIAHTLTL 231
+ R +S + K+F P+A + + WL +L RL DL+ + R T+ +
Sbjct: 353 RPRSEVQSLLAAKTF-IPKA-ENLQQADKWLRIFAADLESRLHDLDLDSEVPRRPRTIAV 410
Query: 232 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
H +R SK P+ +E F + LR+ H
Sbjct: 411 H-HHINGRFGPTR----SKQAPISPQIEINKESIFTMLHDLLRDL---------TEHGES 456
Query: 292 WRITALSVSASKIVPVLSG--TCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSP------ 343
W +SVS S + L T I +F D S ++ + + AP SP
Sbjct: 457 WPCLGVSVSMSNLDSGLPAPQTGRITSFF-ATDNSRSPRKRGREEDVCDAPGSPAKRQTV 515
Query: 344 SGSESYSTLNSTE 356
+ S++Y + ++TE
Sbjct: 516 ASSDAYKSPDATE 528
>gi|335356977|ref|ZP_08548847.1| DNA polymerase IV [Lactobacillus animalis KCTC 3501]
Length = 360
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L VL L+ ++ ET+ TCS G+++NK LAKLAS KP T V VK L
Sbjct: 121 LGSAVLTAHRLQQRIYDETQLTCSIGVSYNKFLAKLASDFCKPVGMTVVRPEEVKAFLFP 180
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K + +G K + + LG+ DL SE L + +G GT L+ RGI
Sbjct: 181 LPIEKFRGVGKKTAPKM-HALGIEKGEDLYAKSERYLNKHFG-KIGTVLYQQVRGIDERP 238
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ R KS G+ ++F P V+ Q +N +L+ RL +L ++ TL L
Sbjct: 239 VEVR-ERKSIGTERTFIRP----LVSEAQ--VNDEFRQLATRLAKELNNKQKHGKTLVL 290
>gi|241951166|ref|XP_002418305.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
gi|223641644|emb|CAX43605.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
Length = 642
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D G I+ E+R + E +T SAG+A K +AKLA+G KP QT + S++
Sbjct: 244 DWDDICFIIGSQILLEVRKDIFAELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAI 303
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWL 161
L + + + +GGKLG S+ N++ V + + FS D ++E G G +
Sbjct: 304 NSFLTNFELTDVTGMGGKLGESIINKINVPPQINSISFIRENFSIDSIKEKLGGELGLKV 363
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+NI RG + E+Q+ + KS S K+F ++ + WL +L RL +
Sbjct: 364 YNICRGTNAIELQSLIEVKSMTSTKNFTS-FSVNNLFDAYDWLKVFAGDLHNRLIDLDNE 422
Query: 222 NKRIAHT 228
N ++ T
Sbjct: 423 NIELSST 429
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ T T SAGI+ NK +AK+AS NKP Q TV V+ L++L I+K
Sbjct: 127 IAKEIRNRIYLNTGLTASAGISINKFIAKIASDYNKPNGQKTVKPKEVESFLEALDIRKF 186
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK+ T LG+ T DL S + L+ +G N+G+ + I RG V+ +
Sbjct: 187 YGI-GKVTTEKMYLLGIFTGKDLKTKSREFLEYHFG-NSGSHYYQIVRGFHNSPVKPERI 244
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
PKS G+ +F L+ ++S + +L + + +S+ L + L++NK T+TL
Sbjct: 245 PKSVGAEHTF-----LENLSS-EVFLKERLDNISQELETRLKKNKLAGKTITL 291
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI +E+R +++ E T SAGI+ NK +AK+AS NKP Q T+ V L+SL IKK
Sbjct: 124 LIASEIRQRIVDEVGLTASAGISINKFVAKIASDYNKPNGQKTIHPDDVTLFLESLDIKK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ T +LG+ T DL + + L+E +G +GT +++ RGIS V
Sbjct: 184 FYGI-GKVTTEKMYQLGIYTGQDLKSKTIEYLEEHFG-KSGTHYYHLVRGISNSPV---- 237
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
K + + KS T + + ++ + E +++ L L+++K T+TL K
Sbjct: 238 --KPNRASKSVAAEHTFYTNLTSEIFMEEKLERIADELAKRLQKHKLSGKTVTL-----K 290
Query: 238 SSDSDSRKKFPSKSCP 253
SD ++ SK+ P
Sbjct: 291 IKYSDFSQQTRSKTLP 306
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 6/179 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ET T SAGI+ NK +AK+AS +KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFNETGLTASAGISINKFIAKIASDYHKPNGQTTITQAEVQDFLDKLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGKDLREKSLAFLERNFG-NSGHYYYELSRGIHRSEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
+ KS G+ ++F L + ++ L ++ E++ RL K I TL + S F
Sbjct: 230 IRKSVGAEETF--AENLTSEVYMERELERIAEDVVRRLKKQQVAGKTI--TLKIKYSDF 284
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
TE+R ++ ET T SAG+++NK LAKLAS M+KP Q +P +++L +KK
Sbjct: 128 TEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKPNGQFVIPPQRGAEFIEALAVKKFHG 187
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
+G L N LG+ T DL S + LQ+ +G +G W + IARG V+ K
Sbjct: 188 VGPVTAEKL-NTLGIYTGADLRAQSLEFLQQHFG-KSGGWYYAIARGEDDRPVEPNRPRK 245
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
S GS +FP R L A ++ + ++ +++ C E+N+ T+T+
Sbjct: 246 SSGSETTFPEDRFLP--AEIEEGVLEMADDVWV-WC---EKNRSFGATVTV 290
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ +T T SAGI+ NK +AK+AS NKP Q TV V L++L I+K
Sbjct: 126 LIAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLENLDIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ LG+ T DL + S D L++ +G +G++ +N+ RGI V+
Sbjct: 186 FYGV-GKVTAEKMYRLGIFTGFDLKQKSVDFLEKHFG-KSGSYYYNVVRGIHLSSVKPHR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+PKS G+ ++F + ++S L +L E ++ L L+++K T+TL K
Sbjct: 244 IPKSVGAERTF-----FENLSSEIFMLEKL-ENIASELEKRLQKSKIAGKTITL-----K 292
Query: 238 SSDSDSRKKFPSKSCP 253
SD + SK+ P
Sbjct: 293 IKYSDFTLQTRSKTLP 308
>gi|224105631|ref|XP_002313880.1| predicted protein [Populus trichocarpa]
gi|222850288|gb|EEE87835.1| predicted protein [Populus trichocarpa]
Length = 1191
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 11/243 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ + +R ++ T T SAGIA N ++A+LA+ KP Q +P SV L LPIK
Sbjct: 558 LLASTIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHKLPIKA 617
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L+ + V T G L S++ LQ+ +G TG LWN +RG+ V
Sbjct: 618 LPGIGHVLEEKLKKQ-NVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRLVGNIQ 676
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAF 236
K+ G+ ++ G R K + Q +L LC+E+S RL Q R+ T TL
Sbjct: 677 ESKTIGAEVNW-GVR-FKDLQDSQCFLLNLCKEVSFRL-----QGCRVQGRTFTLKIKKR 729
Query: 237 KSSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 294
+ + K C L + T I D Q ++ GSF + + G ++
Sbjct: 730 RKDAGEPAKYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRGVGLQV 789
Query: 295 TAL 297
+ L
Sbjct: 790 SKL 792
>gi|356495829|ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Glycine max]
Length = 1115
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 10/249 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ + +R ++ K T T SAGIA N ++A++A+ KP Q + V+ L LPI
Sbjct: 497 LLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHLCQLPINA 556
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L+ + V T G L S+ LQ+ YG TG LW +RGI V
Sbjct: 557 LPGIGYVLQEKLKKQ-NVHTCGQLRMISKASLQKDYGMKTGEMLWIYSRGIDNRLVGGFQ 615
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++ G R K + +H+L LC+E+S RL Q + T TL +
Sbjct: 616 ESKSVGADVNW-GVR-FKDIKDCEHFLINLCKEVSLRLQGCGVQGR----TFTLKIKKRR 669
Query: 238 SSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 295
+ + K C L + T + D + Q +++ LG F + + G ++
Sbjct: 670 KNADEPAKFMGCGDCENLSHSVTIPVATDNVEILQRIVKQLLGCFYIDVKEIRGIGLHVS 729
Query: 296 AL-SVSASK 303
L S ASK
Sbjct: 730 RLESAEASK 738
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 230 IRKSVGAEETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|354546768|emb|CCE43500.1| hypothetical protein CPAR2_211440 [Candida parapsilosis]
Length = 670
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D +LA G + +LR + E +T SAG+A NK++AKL+ G KP QT V ++
Sbjct: 233 DWDDVVLAIGSQFLLDLRQAIYDELGYTTSAGLARNKLVAKLSGGFKKPDDQTIVRNCAL 292
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT--------- 157
L + + + +GGKLG L N+ V + + F ++E+Y F+
Sbjct: 293 NRFLSNFELTDVTGMGGKLGEQLINKFEVPPDRNSIAF----IRENYTFDMVKQELREDA 348
Query: 158 --GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
L+ I RG+ E+ R+ KS S K+F G + T+A WL +LS RL
Sbjct: 349 ELALKLYQIVRGLYSSELTDRIEIKSMMSTKNFLGSKGW-TLADAYDWLTVFSGDLSNRL 407
Query: 216 CSDLEQNKRIAHTLT 230
+DL+ N+ + +LT
Sbjct: 408 -TDLD-NESMELSLT 420
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R ++L++T T SAGI+ NK +AK+AS NKP Q TV + V L++L I
Sbjct: 123 ATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHPTEVLDFLEALDI 182
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
KK + GK+ LG+ T DL +E L E++G +G + I RGI V
Sbjct: 183 KKFYGV-GKVTQKKMYALGIYTGADLKTKTEAYLTENFG-KSGAHYYRIVRGIHHSAV-- 238
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
K H + KS R + + ++ + +ELSE L L ++ T+TL
Sbjct: 239 ----KPHRTRKSIGAERTFNENLASEIFMEERLKELSEELARRLTKSDVAGKTITL 290
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E+R ++ KE T SAGI+ NK +AK+AS NKP Q TV V L+ LPI+K
Sbjct: 126 LLAEEIRARIFKEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPDEVNAFLEELPIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ T +LGV T DL S + L++ +G +G + +N+ RGI EV++
Sbjct: 186 FYGV-GKVTTEKMYQLGVFTGLDLKSKSVEFLEKHFG-KSGNFYFNVVRGIHNSEVKSDR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS + +F S + ++ + E ++ L L ++K T+TL K
Sbjct: 244 ITKSVAAEHTFD------VNLSSEIFMLEKLEGIAIALERRLNKHKVAGKTITL-----K 292
Query: 238 SSDSDSRKKFPSKSCP 253
SD ++ SK+ P
Sbjct: 293 IKYSDFTQQTRSKTVP 308
>gi|213963495|ref|ZP_03391749.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
gi|213953903|gb|EEB65231.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
Length = 356
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R ++ E T SAGI+ NK +AK+AS +KP QTT+ + V+ LD L +
Sbjct: 110 ATLIAQEIRQRIFNEIGLTASAGISVNKFIAKIASDYHKPNGQTTITQAEVQDFLDKLDV 169
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K + GK+ +LG+ DL + S L+ ++G N+G + + ++RGI EVQ
Sbjct: 170 RKFYGI-GKVTAEKMYQLGIFKGKDLREKSLAFLERNFG-NSGHYYYELSRGIHRSEVQP 227
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F A + V ++ + E ++E + LE+ + T+TL
Sbjct: 228 FRIRKSVGAEETF----AENLTSEV--YMERELERIAEDVVRRLEKQQVAGKTITL 277
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 230 IRKSVGAEETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 15/227 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ + T SAGI+ NK +AK+AS +NKP Q TVP V L+ L IKK
Sbjct: 127 LIALEIRQKIKERTGLNASAGISINKFIAKVASDINKPNGQKTVPPEEVIPFLEVLDIKK 186
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G + + G+ T DL S + L E++G +G + +NI RGI EV+
Sbjct: 187 FYGVGKVMKEKMYRH-GIYTGLDLKGKSIEFLSENFG-KSGAYYYNIVRGIHNSEVKPSR 244
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS + ++F + +AS L +L +SE + L+++K T+TL K
Sbjct: 245 TRKSLAAERTFS-----ENIASEIFMLEKLA-PISEEVERRLKKSKVAGKTVTL-----K 293
Query: 238 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 282
SD + SK+ PL + +T LFQ G++ + G+
Sbjct: 294 IKYSDFTLQTRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGI 340
>gi|158338583|ref|YP_001519760.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
gi|158308824|gb|ABW30441.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
Length = 355
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E++ + +ET T SAG++ NK LAK+ASG++KP + V + + LPI+K
Sbjct: 122 IAREIKGLIHQETHLTASAGVSINKFLAKMASGLDKPNGLSLVAPDQAEAFVQQLPIEKF 181
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK+ + ++LG+ T +L ++SE L +G G + + IARGI V A +
Sbjct: 182 HGI-GKVTAAKMHQLGIQTGAELRQWSEPSLVRQFG-KVGHYYYGIARGIDERPVIANRI 239
Query: 179 PKSHGSGKS-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ +S FP L + L+ + ++ RL +N+R HTLTL
Sbjct: 240 RKSIGAERSFFPDISGLPV---LMEELDAIAAQVHLRLA----ENQRSGHTLTL 286
>gi|405120879|gb|AFR95649.1| eta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 704
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 29 DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 88
DG S++ W D L G +++ +R +V +TC+A L
Sbjct: 238 DGRTSRSNRDSW--------EDWALCMGGELMSNVREEVYLRLHYTCTA----------L 279
Query: 89 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 148
S KP QT + ++V L+ ++ LGGKLG ++ E G TVGD+L S D+
Sbjct: 280 CSAWKKPNNQTILRTAAVPAFLNDRDFTDIRSLGGKLGAAIAQEFGAKTVGDMLTVSLDE 339
Query: 149 LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 208
+Q+ +G W++NI RGI EV R+ KS + KS A+ + WL+ L
Sbjct: 340 MQKKFG-EESIWVYNILRGIDHSEVTERVTTKSMLASKSIRP--AVTSPQQGHQWLSILA 396
Query: 209 EELSERL 215
EL+ RL
Sbjct: 397 GELNVRL 403
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
TE+R +L ET T SAG+++NK LAKLAS M KP Q +P + +LP+KK
Sbjct: 128 TEIRACILSETGLTASAGVSYNKFLAKLASDMRKPNGQYVIPPQRGAEFIATLPVKKFHG 187
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
+ G + + N LG+ T DL S + LQ +G +G W + IARG V+ K
Sbjct: 188 I-GPVTAAKMNALGIQTGADLRSQSIEFLQRQFG-KSGAWYYAIARGEDDRPVEPNRPRK 245
Query: 181 SHGSGKSFPGPRAL 194
S GS +F R +
Sbjct: 246 SSGSETTFSEDRVI 259
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+RM++L+ T T S GI+ NK LAK+AS NKP Q T+ V L+ L IKK
Sbjct: 121 LIAHEIRMKILERTGLTASVGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G K + + LG+ T DL S + L E +G G ++I RG+S V+
Sbjct: 181 FFGIGKKTADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G+ ++F L + ++ L+ L EELS RL
Sbjct: 239 TIKSVGTERTF--DENLSSEVFIETKLDILVEELSLRL 274
>gi|451947937|ref|YP_007468532.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfocapsa sulfexigens DSM 10523]
gi|451907285|gb|AGF78879.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfocapsa sulfexigens DSM 10523]
Length = 359
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R +V E TCSAG+++NK LAK+AS M KP T +P + LLD+LPI K +
Sbjct: 129 IRSRVFHEVGLTCSAGVSYNKFLAKVASDMKKPDGLTVIPIDEARSLLDTLPIGKFFGV- 187
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
G++ + LG+ D+L+F + +L +G G + +IARG+ V+++ KS
Sbjct: 188 GRVTEKKMHSLGIHYGRDILRFDKAQLIRFFG-KAGAFFHDIARGVDNRPVESQKGRKSI 246
Query: 183 GSGKSF 188
G+ +F
Sbjct: 247 GTETTF 252
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E+R+++ E T SAGI+ NK +AK+AS NKP Q TV V L+ LPI+K
Sbjct: 126 LLAQEIRLRIFNEVGITASAGISVNKFVAKIASDYNKPNGQKTVNPDEVIPFLEELPIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ T +LG+ T DL S + L++ +G +G + +N+ RGI EV+A
Sbjct: 186 FYGV-GKVTTEKMYQLGIFTGLDLKSKSVEFLEKHFG-KSGGFYFNVVRGIHNSEVKASR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS + +F ++S L QL E+++ L L++ + T+TL K
Sbjct: 244 ITKSVAAEHTFD-----VNLSSEIFMLEQL-EKIAVSLEKRLKKYNILGKTVTL-----K 292
Query: 238 SSDSDSRKKFPSKSCP 253
SD ++ SK+ P
Sbjct: 293 IKYSDFTQQTRSKTLP 308
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ ETE T SAGIA NK LAK+AS KP Q + V+ L LP+ K+
Sbjct: 124 IAQTIRAQIRAETELTASAGIAPNKFLAKIASDWRKPDGQFVIRPHRVEAFLTPLPVNKV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L ELG+ TVGDL SE +L+ +G + G L+ ARGI V++
Sbjct: 184 PGVGKVMEAKL-AELGIATVGDLRARSEAELEARFG-SFGLRLYQRARGIDERPVESDQP 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F AL L +L+E+ + + +RIA T+ L
Sbjct: 242 VQSISSEDTFAEDLALDA-------LEPAIRQLAEKTWNATRRTERIARTVVL 287
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 8/190 (4%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
D K + LI E+R ++ ++T T SAGI+ NK LAK+AS +NKP Q T+
Sbjct: 109 AYLDVTENKKGMESANLIAKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTI 168
Query: 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
++ L+ LP++K + GK+ + LG+ DL K S + L +G +G
Sbjct: 169 HPDKMEEFLEELPVEKFYGV-GKVTANKMFSLGIYKGKDLKKKSLEDLIRIFG-KSGQHY 226
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+N+ RGI EV+ + KS ++F + + Q +N+ E L++ L L++
Sbjct: 227 YNVVRGIHTSEVKPHRIQKSVAVERTF-----FEDLLDEQQ-INEKLESLAQELHQRLQK 280
Query: 222 NKRIAHTLTL 231
N + TLTL
Sbjct: 281 NNILGRTLTL 290
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 55 CGVLIVTE----LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
CG+ TE +R Q+ +ET T SAGIA NK LAK+AS NKP Q V V L
Sbjct: 113 CGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVVRPGKVLDFL 172
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
LP++K+ + GK+ + +LG+ TVGDL S ++L+ +G G L+ +ARGI
Sbjct: 173 QPLPVRKVPGV-GKVTQARLEQLGIHTVGDLATHSAEELEHYFG-RYGRRLYELARGIDE 230
Query: 171 EEVQ 174
EVQ
Sbjct: 231 REVQ 234
>gi|330718299|ref|ZP_08312899.1| DNA-damage-inducible protein P [Leuconostoc fallax KCTC 3537]
Length = 361
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 55 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 114
G I ++R ++LK T T S G++HNK+LAKL S NKP T + S++ +D+LP
Sbjct: 127 SGATIAAQIRHEILKTTHLTSSVGVSHNKLLAKLGSNYNKPNGVTVINHSNMLEFIDALP 186
Query: 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
I K + +G K L +L + L + S++ L+ +G G L+ ARG++ EV+
Sbjct: 187 IDKFRGVGQKTKEKL-IQLDIHDGRQLRQLSQEMLRAQFG-KFGEHLYLQARGMNFSEVK 244
Query: 175 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ +S G +F R L T A VQ+ QL +++ L Q K + TL +
Sbjct: 245 WQRQRQSVGKETTF--DRFLHTEAQVQNAFGQLA----DKMIISLRQQKVVGRTLNI 295
>gi|366161628|ref|ZP_09461490.1| DNA polymerase IV [Escherichia sp. TW09308]
gi|432371030|ref|ZP_19614094.1| DNA polymerase IV [Escherichia coli KTE11]
gi|430900243|gb|ELC22262.1| DNA polymerase IV [Escherichia coli KTE11]
Length = 351
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K+ L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKYDLVMLLKRFG-KFGHILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|350639910|gb|EHA28263.1| hypothetical protein ASPNIDRAFT_43424 [Aspergillus niger ATCC 1015]
Length = 1165
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I ELR V KET S GI N +LAK+A KPA Q + +V + +L ++ +
Sbjct: 509 IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDL 568
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G LGT L++ LGV V D+ + D+L S G TG +W ARGI EV +L
Sbjct: 569 PGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVL 627
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 628 RKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|134078076|emb|CAK40159.1| unnamed protein product [Aspergillus niger]
Length = 1165
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I ELR V KET S GI N +LAK+A KPA Q + +V + +L ++ +
Sbjct: 509 IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDL 568
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G LGT L++ LGV V D+ + D+L S G TG +W ARGI EV +L
Sbjct: 569 PGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVL 627
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 628 RKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|260783390|ref|XP_002586758.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
gi|229271883|gb|EEN42769.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
Length = 488
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D R K LACG I E+R + + TC AGIAHNK+LAKL +G +KP QQT++ V
Sbjct: 132 DERHKRLACGSQIAAEIREALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQTSLLPGGV 191
Query: 107 KGLLDSLPI-KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 165
L+ +L + + +G + LQ LG++TV +L D LQ +G T + +
Sbjct: 192 GKLMGTLKTARNIPGIGSRTFKRLQT-LGISTVQELQDAPADTLQAEFGSQTAQVMQQLC 250
Query: 166 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
RG+ V P++ SF + + + + L + L +RL D R
Sbjct: 251 RGVDPSPVTPTGPPQTISDEDSF---KKCGSFQDAKKRMTGLLQSLMKRLKGD----GRF 303
Query: 226 AHTLTLHASAFKSSD 240
H L + +S+
Sbjct: 304 PHVLRVTVRKLSASN 318
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR ++ T T SAG+++NKMLAK+AS +NKP +P + SLPI++
Sbjct: 124 IAERLRAEIRAATGLTASAGVSYNKMLAKIASDLNKPDGLAVIPPAEGPAFAASLPIERF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + + LG+ T DLL+FS + L++++G G + +++ARGI V+
Sbjct: 184 HGI-GKATAAHMHALGIKTGADLLRFSAESLRQAFG-KHGDFYYHMARGIDLRPVEPTRE 241
Query: 179 PKSHGSGKSF 188
KS GS +F
Sbjct: 242 RKSIGSETTF 251
>gi|256544709|ref|ZP_05472081.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
gi|256399598|gb|EEU13203.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
Length = 347
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 14/207 (6%)
Query: 25 LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 84
+ES + ++ E D + K+LA +++ QVLKET S GI++NK
Sbjct: 89 IESYSHTIEQVSIDEAYIFIDNNEDKKILA------QKIQNQVLKETGIGVSIGISYNKF 142
Query: 85 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 144
LAKLAS NKP + V +L +L IKK+ LG K L+ ++GV + DLLK
Sbjct: 143 LAKLASDWNKPMGIKEISKEEVPEILKNLDIKKVHGLGNKSVQKLK-DIGVYKIADLLKL 201
Query: 145 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 204
++ LQ +G G +++ + RG +VQ K G+ F + K + + ++
Sbjct: 202 DQEFLQSLFG-KQGRYVYKVIRGEDNRKVQTN--TKRKSIGREFTFRKNTKDLKILYAYI 258
Query: 205 NQLCEELSERLCSDLEQNKRIAHTLTL 231
+E+S+++ DL+ A+T+ L
Sbjct: 259 ----DEISQKIEEDLKAKDIKAYTINL 281
>gi|81427996|ref|YP_394995.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
gi|78609637|emb|CAI54683.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
Length = 376
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L + +V L+ +L+ET+ SAGI++NK LAK+AS KPA +T V L
Sbjct: 134 LTHTIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSR 193
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K + +G K +Q+ LG+ T DLL SE L + +G G L+ RGI
Sbjct: 194 LPIEKFRGVGQKTVPKMQD-LGIMTGADLLAQSEMFLMQHFG-KLGYGLYRHVRGIDNRP 251
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
V+ + KS G+ ++ P L + VQ L L EL++RL
Sbjct: 252 VEYQRERKSIGNEHTYGQP--LISEEQVQVQLKSLAVELAQRL 292
>gi|317031843|ref|XP_001393536.2| DNA damage repair protein Mus42 [Aspergillus niger CBS 513.88]
Length = 1155
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I ELR V KET S GI N +LAK+A KPA Q + +V + +L ++ +
Sbjct: 509 IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDL 568
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G LGT L++ LGV V D+ + D+L S G TG +W ARGI EV +L
Sbjct: 569 PGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVL 627
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 628 RKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|296083109|emb|CBI22513.3| unnamed protein product [Vitis vinifera]
Length = 1123
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ + +R ++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK
Sbjct: 492 LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKA 551
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 552 LPGIGHVLEEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQ 610
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G+ ++ G R + +H+L LC+E++ RL
Sbjct: 611 ESKSIGAEVNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 646
>gi|359475496|ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vitis vinifera]
Length = 1175
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ + +R ++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK
Sbjct: 514 LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKA 573
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 574 LPGIGHVLEEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQ 632
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G+ ++ G R + +H+L LC+E++ RL
Sbjct: 633 ESKSIGAEVNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 668
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 21/200 (10%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V+ L+ LPI+K
Sbjct: 126 LLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEAFLEDLPIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ T +LG+ T DL S + L++ +G +G + +++ RGI EV++
Sbjct: 186 FYGV-GKVTTEKMYQLGIFTGTDLKSKSLEFLEKHFG-KSGAFYYHVVRGIHNSEVKSSR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRI---AHTLTLHA 233
+ KS + +F ++S + QL ER+ S LE+ KR T+TL
Sbjct: 244 IAKSVAAEHTFD-----VNLSSEIFMMEQL-----ERIASSLEKRLKRYNVSGKTITL-- 291
Query: 234 SAFKSSDSDSRKKFPSKSCP 253
K SD ++ SK+ P
Sbjct: 292 ---KIKYSDFSQQTRSKTLP 308
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 10/166 (6%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D +LA V I E+R ++ +ET T SAG+++NK+LAKLAS KP VP
Sbjct: 147 DGILA--VQIAREIRARIERETGLTASAGVSYNKLLAKLASDWRKPNGLFVVPPERGLTF 204
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G L + +G+ TV DL S + L +G TG W + IARGI
Sbjct: 205 LAPLPVSKLHGVGPATVKKL-SSMGIHTVLDLRNMSREALIAQFG-KTGLWFYEIARGID 262
Query: 170 GEEVQARLLPKSHGSGKSFP----GPRALKTVASVQHWLNQLCEEL 211
VQ KS G+ ++FP P+ + +A++Q Q+ L
Sbjct: 263 LRPVQPSRQRKSVGTERTFPKNLADPKVM--LATLQQMAGQVAARL 306
>gi|417671081|ref|ZP_12320581.1| DNA polymerase IV [Shigella dysenteriae 155-74]
gi|332097566|gb|EGJ02545.1| DNA polymerase IV [Shigella dysenteriae 155-74]
Length = 345
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + E+G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 13/199 (6%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R ++L +T T SAGI+ NK +AK+AS NKP Q TV V L +L I
Sbjct: 124 ATLIAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNPEEVLEFLSALDI 183
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K + GK+ +LG+ T DL K S + L + +G +G +N+ RGI V+
Sbjct: 184 RKFYGV-GKVTAEKMYQLGIFTGADLKKKSLEFLNQEFG-KSGQHYYNVVRGIHLSTVKP 241
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
PKS G+ ++F S + ++ Q E +++ L L+++K T+TL
Sbjct: 242 SRTPKSVGAERTFSEN------LSSEIFMLQRLENIAQELEKRLKKSKLAGKTVTL---- 291
Query: 236 FKSSDSDSRKKFPSKSCPL 254
K SD + SK+ P
Sbjct: 292 -KIKYSDFTLQTRSKTLPF 309
>gi|41057954|gb|AAR98934.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 320
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 99 LIAQEIRQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 158
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + E+G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 159 IPGV-GKVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 216
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 217 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 251
>gi|194432752|ref|ZP_03065037.1| DNA polymerase IV [Shigella dysenteriae 1012]
gi|194419014|gb|EDX35098.1| DNA polymerase IV [Shigella dysenteriae 1012]
Length = 350
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 120 LIAQEIRQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 179
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + E+G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 180 IPGV-GKVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 237
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 238 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|448089441|ref|XP_004196808.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|448093718|ref|XP_004197839.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359378230|emb|CCE84489.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359379261|emb|CCE83458.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
Length = 693
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D + G I+ E+R ++ K FT S G+A NK++AKLA G KP QT + S++
Sbjct: 233 DWDDACILLGSQILFEIRWEIFKVLGFTTSGGVARNKVMAKLAGGFLKPDNQTIILNSNI 292
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTT---------VGDLLKFSEDKLQESYGFNT 157
L++ + M+ +GGK G + LGV T + D E K + S T
Sbjct: 293 NSFLENFELDDMRSMGGKAGQLILKTLGVPTDTKSNTIAYIRDNFTLGELKDKLSNDSVT 352
Query: 158 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
++++ RG EE+ R KS S K+F + T+ WL +L R+
Sbjct: 353 SEKIYDLVRGNYSEELTFRTDVKSMMSRKNFTSRTYVTTLKDAIDWLKVFSGDLVNRIV 411
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L
Sbjct: 115 LATATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTP 174
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP+ K+ +G + L ELG+ TVGDL E +L+ +G + G L+ ARGI
Sbjct: 175 LPVSKVPGVGKVMQAKL-AELGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDQRP 232
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+A +S S +F AL L L+E+ + + +RIA T+ L
Sbjct: 233 VEADQQVQSISSEDTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|255085274|ref|XP_002505068.1| predicted protein [Micromonas sp. RCC299]
gi|226520337|gb|ACO66326.1| predicted protein [Micromonas sp. RCC299]
Length = 236
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D LA G I +R VL +T FT S G+AHNKMLAKLAS NKP +QT V +V +
Sbjct: 157 DMRLAIGAHICAGIRAAVLHQTGFTMSGGVAHNKMLAKLASARNKPNKQTAVSARAVTEM 216
Query: 110 LDSLPIKKMKQLGGKLG 126
++SLP++ +K LGGKLG
Sbjct: 217 MESLPMRSIKGLGGKLG 233
>gi|424779955|ref|ZP_18206841.1| DNA polymerase IV [Catellicoccus marimammalium M35/04/3]
gi|422843494|gb|EKU27931.1| DNA polymerase IV [Catellicoccus marimammalium M35/04/3]
Length = 360
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 109/208 (52%), Gaps = 10/208 (4%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D HR + + + + ++ ++ +E + TCSAG+++NK LAKLAS KP T +
Sbjct: 112 DVSHRCQTITEAIQVARMIQYKIWEELQLTCSAGVSYNKTLAKLASDYQKPCGLTYITKE 171
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
L LPI+K K +G K ++ LG+ D+L++SE + +++G G L+
Sbjct: 172 QAPQFLAQLPIEKFKGIGKKTLPKMKA-LGIHYGRDVLRYSEQEWIQNFG-KFGYDLYQR 229
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+GI V+ + +S G+ ++F P + + L Q +L+ER+ +L++ +
Sbjct: 230 VQGIDERPVEYKRKKQSIGTERTFHPPLLDEGM------LQQTLRQLTERIAIELKEKEY 283
Query: 225 IAHTLTLHASAFKSSDSDSRK-KFPSKS 251
+ LTL + + ++ +R+ +FP ++
Sbjct: 284 YGNVLTLKWR-YPNKNAQTRQIQFPHRT 310
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ T DL SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|320592660|gb|EFX05090.1| sister chromatid cohesion protein [Grosmannia clavigera kw1407]
Length = 870
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 114
G IV +RM + F CSAGIA NK+++KL S +KP +QT V +V L+ L
Sbjct: 295 GARIVRAVRMAIYDHLRFRCSAGIASNKLVSKLGSSQHKPDRQTVVRPRAVGSFLERLSS 354
Query: 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ---------ESYGFNTGTWLWNIA 165
+ +++ LGGKLG + ++ +L ++Q ES +T ++ +
Sbjct: 355 VTRLRGLGGKLGARVVAAFDTESIAELRTIPLAEMQSRLAGGGAGESIDADTARHVYGML 414
Query: 166 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
RGI EV +R KS S KSF P L + + WL EL RL ++R+
Sbjct: 415 RGIDHGEVTSRTEIKSLISAKSFQPP--LTSPEQGRRWLRVFAAELRCRLL-----DERL 467
Query: 226 AHTLTLHASAFKSSD 240
+ L S + +D
Sbjct: 468 SQALLEAVSVGRDAD 482
>gi|424150956|ref|ZP_17882245.1| DNA polymerase IV [Escherichia coli PA24]
gi|424535976|ref|ZP_17979270.1| DNA polymerase IV [Escherichia coli EC4013]
gi|390734600|gb|EIO06094.1| DNA polymerase IV [Escherichia coli PA24]
gi|390877299|gb|EIP38236.1| DNA polymerase IV [Escherichia coli EC4013]
Length = 351
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ V + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------VEDIHHWSE--CEAIIERLYPELERR 273
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V G L++L I+K
Sbjct: 126 LIAEEIRTRIFNEVGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLGFLEALDIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ + G+ T DL S + L++++G +G++ + I RGI EV+
Sbjct: 186 FYGI-GKVTAEKMYQKGIFTGTDLKSKSLEFLEQNFG-KSGSYYYYIVRGIHNSEVKPNR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS + ++F L + + L + EE+S+RL ++K T+TL
Sbjct: 244 IRKSLAAERTF--SENLSSEIFMLEKLEHIAEEVSKRLI----RSKVAGKTVTL 291
>gi|291278892|ref|YP_003495727.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
gi|290753594|dbj|BAI79971.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
Length = 400
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 74 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 133
TCS G+ NK++AK+ASG+NKP VP K +DS PI K+ +G +L +N L
Sbjct: 131 TCSIGVGSNKLIAKMASGINKPDGFCYVPREKNKDFIDSFPISKIWGVGRRLAKRFEN-L 189
Query: 134 GVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRA 193
G+ + DL F D L E +G N G L+ +A G E V P G S P
Sbjct: 190 GIFSTKDLRDFGVDSLVEMFGKN-GYKLYAMANGEYFEGVNTNEEP-VKSIGHSMTLPMD 247
Query: 194 LKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
+ + + +L QLCE +SER + KR+
Sbjct: 248 IFNMDELSPYLLQLCEMVSERARQNRVSGKRL 279
>gi|254422468|ref|ZP_05036186.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
gi|196189957|gb|EDX84921.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
Length = 371
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V I ++R ++ + + T SAG++ NK LAK+AS +NKP + + K ++
Sbjct: 135 IGSAVAIAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDGLSFISPEEAKTFIEQ 194
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
L I+ +G T +++ LG+ T DL +++ +L +++G G++ + +AR
Sbjct: 195 LRIEDFYGVGPATATKMKS-LGIHTGADLKTWTQAELTQTFG-KVGSYYYRVARAEDNRP 252
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V + KS G+ +SF R L + ++ L + E+S+R L++NKR HTLTL
Sbjct: 253 VNPNRIRKSIGAERSF--FRDLSQIEDMETALANIATEVSQR----LQKNKRQGHTLTLK 306
Query: 233 ASAFKSSDSDSRKK 246
+ + D+ +R +
Sbjct: 307 IK-YDNYDTITRSR 319
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L
Sbjct: 115 LATATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTP 174
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP+ K+ +G + L ELG+ TVGDL E +L+ +G + G L+ ARGI
Sbjct: 175 LPVSKVPGVGKVMQAKL-AELGIVTVGDLRTHGEVELEARFG-SFGLRLYQRARGIDQRP 232
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+A +S S +F AL L L+E+ + + +RIA T+ L
Sbjct: 233 VEADQQVQSISSEDTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|325190748|emb|CCA25240.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 619
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 35/221 (15%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
++LL G LI E+R V E + CS GI+ NK++AKLAS +NKP QT V V L
Sbjct: 207 EQLLCVGALISREIREAVYTELGYRCSTGISTNKLIAKLASPLNKPNGQTIVSPRFVPLL 266
Query: 110 LDSLPIKKMKQLGGKLGTSL----------------------QNEL----------GVTT 137
+ PI+K++ LGGKLG + QN + T
Sbjct: 267 MRHHPIQKVRGLGGKLGHRMMEYYDQFVCSKEKQENKEPQKYQNTMESGGKRDEIKSKIT 326
Query: 138 VGDLLK-FSEDKLQESYGFNTGTWLWNIARGISGEE-VQA-RLLPKSHGSGKSFPGPRAL 194
GD ++ S L +G T +++ + G G E V ++ K S K F +
Sbjct: 327 AGDFIQACSLSSLSAYFGNETAAFVYRLCLGDDGNEPVDGDKVDLKGFSSTKQFTPNSHI 386
Query: 195 KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
+ +++WL + EE+ +R+ + ++R +TLH ++
Sbjct: 387 QNEPQLRYWLRIISEEMMDRINEEKHDHRRFPVHVTLHITS 427
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ ++T T SAGI+ NK LAK+AS +NKP Q T+ ++ L+ LP++K
Sbjct: 126 IAREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKIENFLEELPVEKF 185
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ G++ + LG+ DL K + +L +G +G++ +N+ RGI EV
Sbjct: 186 YGV-GRVTANKMFTLGIFKGKDLKKKTLQELVSLFG-KSGSYYYNVVRGIHNSEV----- 238
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
K H KS R + +N+ E LS L L++N + LTL
Sbjct: 239 -KPHRIQKSVAVERTFFEDLFDEQQINEKLESLSAELHQRLQKNNILGRALTL 290
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI +R Q+L++T+ T SAG+++NKMLAK+AS +NKP + + +LP+
Sbjct: 119 ATLIANRIRQQILRQTQLTASAGVSYNKMLAKIASDLNKPNGIAVITPEQGLDFIANLPV 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
KK + GK + +++G+ T DL D L++ +G G + IA GI EV+A
Sbjct: 179 KKFHGI-GKATVKMLHDMGIFTGLDLRNTPADVLKQHFG-KRGDFFHQIAHGIDNREVKA 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS GS +F + + + L E S+ DL++ +R A T+T+
Sbjct: 237 ERNHKSVGSETTF-----VHNTMDDKVIVAALYRENSQAF-KDLQKKQRKARTITI 286
>gi|19568909|gb|AAL91966.1|AF483103_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|359459403|ref|ZP_09247966.1| DNA polymerase IV [Acaryochloris sp. CCMEE 5410]
Length = 355
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E++ +++ET T SAG++ NK LAK+ASG+ KP + V + + LPI+K
Sbjct: 122 IAREIKRLIVQETHLTASAGVSINKFLAKMASGLEKPNGLSLVAPDQAETFVQQLPIEKF 181
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK+ + ++LG+ T +L ++SE L +G G + + IARGI V A +
Sbjct: 182 HGI-GKVTAAKMHQLGIQTGTELRQWSEPSLVRQFG-KVGHYYYGIARGIDQRPVVANRI 239
Query: 179 PKSHGSGKS-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ +S FP L + L+ + ++ RL +N+R +TLTL
Sbjct: 240 RKSIGAERSFFPDISGLPV---LMEELDAIATQVHLRLA----ENQRSGYTLTL 286
>gi|238752553|ref|ZP_04614027.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
gi|238709228|gb|EEQ01472.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
Length = 371
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K
Sbjct: 140 LIAQEIRQSIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLSFLHDLPLSK 199
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G LQ ELG+ T D+ FS+ +L + +G G LW + GI EV
Sbjct: 200 IPGVGKVTAKRLQ-ELGLITCSDVQNFSQAELLKRFG-KFGHVLWERSHGIDEREVSPDR 257
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W Q CE L E+L S+LE R
Sbjct: 258 LRKSVGVERTL--------AEDIHDW--QSCESLIEQLYSELETRLR 294
>gi|119476993|ref|ZP_01617274.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
gi|119449800|gb|EAW31037.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
Length = 388
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 4/172 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R +V + T SAG+A NK LAK+ S NKP +P + V + ++P+ +
Sbjct: 148 LIAEEIRQRVKESVGITLSAGVAPNKFLAKIGSDWNKPNGLCVIPPARVDAFVQAMPVDR 207
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GDL FS +L E +G + G+ L++++RGI V+
Sbjct: 208 LFGV-GKVTAERLHRMGIQTCGDLRAFSIFQLSERFG-SFGSRLYDLSRGIDDRAVKTGR 265
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 229
+ KS +FP L + S L L ++L+ RL + +Q+K A+ +
Sbjct: 266 IRKSLSVEHTFPSD--LSAIDSCLEQLPDLFDQLTTRLQTLNDQSKGAAYRV 315
>gi|22095606|sp|P58963.1|DPO4_ESCFE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19568915|gb|AAL91969.1|AF483106_1 DNA polymerase DinB [Escherichia fergusonii]
Length = 331
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 110 LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAK 169
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 170 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 227
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 228 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 262
>gi|406892189|gb|EKD37611.1| hypothetical protein ACD_75C01070G0002 [uncultured bacterium]
Length = 370
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ ++R + +E + T SAG++ NK LAK+AS +NKP TT+P L SLPI+K
Sbjct: 124 LLAEKIRRHIFRELQLTASAGVSFNKFLAKVASDINKPNGITTIPPDKALEFLASLPIRK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK ++LG+TT +L ++ ED+L +G G++ +I RGI V+ +
Sbjct: 184 FHGV-GKATERKMHQLGITTGYELRQWREDQLIRHFG-KYGSFFHDIVRGIDNRPVEPQR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G + L T +N + +L+E L L + + + LTL
Sbjct: 242 IRKSIGCETT------LATDTDDIGTINAILADLAEELDHSLGKRRIGGYNLTL 289
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+
Sbjct: 109 LDVTHNKKGIDSANLIAKEIRRKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ V L++LPI++ +G + +LG+ DL + S + L +G G ++
Sbjct: 169 TKVLSFLENLPIERFYGIGNVTANKMY-QLGIYKGKDLKEKSLEYLITHFG-KMGRHYYD 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 214
I RGI EV+ + KS G ++ + T + L +L +EL ER
Sbjct: 227 IVRGIHRSEVKPHRIAKSVGVEHTYADD--IDTEKDIDQQLIRLAQELYER 275
>gi|302684051|ref|XP_003031706.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
gi|300105399|gb|EFI96803.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
Length = 635
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D LA + + + ++ +T SAGI NK LAKL + KP + +++
Sbjct: 262 DHALAIAAEYMLKAKEEIYARLGYTTSAGIGRNKFLAKLTASYRKPRGLNVLRNAAIPNY 321
Query: 110 LDSLPIKK------MKQLGGKLGTSLQNELGVTTVGDLLKFSE--DKLQESYGFNTGTWL 161
L LP +K ++ LGGKLG ++ E +TVGDL + +++Q+ +G W+
Sbjct: 322 LRPLPFQKAGTSFSIRFLGGKLGKAIAQEYDASTVGDLFVDAPVTEEMQQKFG-EESIWV 380
Query: 162 WNI-ARGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC-SD 218
+ + RGI EV+ + L KS + K+ P P + A WL L EL+ RL +
Sbjct: 381 YEVLRRGIDRNEVKEKTALFKSMLASKNLPKP--ITNAADGHQWLRVLAAELALRLKDAR 438
Query: 219 LEQNKRIAHTLTLHASAFKSSDSDSRKKFP 248
LE TL LHA + + FP
Sbjct: 439 LESPNLWPKTLVLHARKGYDTGRSKQAPFP 468
>gi|425738440|ref|ZP_18856703.1| DNA polymerase IV [Staphylococcus massiliensis S46]
gi|425479672|gb|EKU46845.1| DNA polymerase IV [Staphylococcus massiliensis S46]
Length = 356
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 8/190 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + +T+ T SAG+++NK LAKLASGMNKP T + ++ V +L +L I
Sbjct: 124 IAEYIRRDIYDKTQLTSSAGVSYNKFLAKLASGMNKPNGLTIIDYNHVHEILMNLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + + G+ T DL + S D+L +G G +N RGI EV+A +
Sbjct: 184 PGVGSRSKEKMHHH-GIYTGADLYQKSMDELIRWFG-KRGVGFYNKVRGIDHREVKAERI 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G+ ++F ++ + + Q ELS + L + ++ A T+T+ +K
Sbjct: 242 RKSVGTERTF------QSDVNDDALILQKIRELSHKTSERLGKLQKSAGTVTVKIKTYKY 295
Query: 239 SDSDSRKKFP 248
++ P
Sbjct: 296 ETISKQRTLP 305
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 55 CGVLIVTE----LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
CG+ TE +R Q+ +ET T SAG+A NK LAK+AS NKP V + V L
Sbjct: 122 CGLPSATEVAQVIRQQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPNKVLAFL 181
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
+ LP++K+ + GK+ + +LG+ TVGDL S +L+ +G G L+ +ARGI
Sbjct: 182 EPLPVRKVPGV-GKVTQARLEQLGIQTVGDLATHSAQELEHYFG-RYGRRLYELARGIDE 239
Query: 171 EEVQ 174
EVQ
Sbjct: 240 REVQ 243
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQFIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ T DL SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 15/202 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ E SAGI+ NK +AK+AS NKP Q TV V L+ L I+K
Sbjct: 126 LIAKEIRQRIFDELGLVASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLEKLEIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ T +LG+ T DL + SE L E++G +G + +++ RG+ V+
Sbjct: 186 FYGV-GKVTTEKMYKLGIFTGFDLKQKSEIFLTENFG-KSGGYYYHVVRGVHNSAVKPHR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+PKS G+ ++F L + + L + EL RL K I TL + S F
Sbjct: 244 IPKSVGAERTF--SENLSSEIFMLERLEHIATELERRLKKSTISGKTI--TLKIKYSDF- 298
Query: 238 SSDSDSRKKFPSKSCPLRYGTA 259
++S LRY A
Sbjct: 299 --------TLQTRSKTLRYYIA 312
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I +
Sbjct: 124 IANYIRRDIFEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMNLDIGEF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ T DL E +L +G G L+N ARGI EV+A +
Sbjct: 184 PGV-GKASKKVMHDNGIFTGQDLYDKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|156378071|ref|XP_001630968.1| predicted protein [Nematostella vectensis]
gi|156217999|gb|EDO38905.1| predicted protein [Nematostella vectensis]
Length = 403
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 21/218 (9%)
Query: 41 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 100
+C C R L G +I +ELR + E T AGIAHNK+LAK+A NKP +QT
Sbjct: 142 VCPCGCHER---LTVGSVIASELRKAIFDEIGLTTCAGIAHNKLLAKIAGEQNKPNKQTL 198
Query: 101 VPFSSVKGLLDSLPIKKMKQLG----GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 156
+ V+GL+ LP++K+ +G +LG+ LG+TT+ +L + S+ L +
Sbjct: 199 LYTERVEGLMGLLPVRKVPGIGRSTCARLGS-----LGITTIAELQECSKKALLNEFNSQ 253
Query: 157 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
L ++ G +V +PKS S+ L ++ SV+ L L L R+
Sbjct: 254 EVRILHALSHGADDSQVSTDSMPKSISEEDSYSN---LCSLESVKTNLRVLIGNLIPRIT 310
Query: 217 SDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
D H T+ + + + K S+ CP+
Sbjct: 311 ED------TGHPQTVRLAIRRGGQAPGVYKKESRQCPV 342
>gi|224007068|ref|XP_002292494.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972136|gb|EED90469.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1538
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 5/187 (2%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D + L G + +R V ++ FT SAGI+ +K++AKL + KP Q + ++
Sbjct: 319 DEIGRALRLGCHVSANVRRVVFQKLGFTLSAGISTSKLVAKLGATYGKPNGQAVIYPVAI 378
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
++D I+K + LGGKLG + + + + + + + + G +G W+++ R
Sbjct: 379 PKVMDETQIRKARMLGGKLGKKV-GSMNIDADDVIRSYIDKSISFAVGDESGRWVFDACR 437
Query: 167 GISGEEVQARL--LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
GI EEV+ L LPKS + KS G + + + W+ L ++ +R+ D +N R
Sbjct: 438 GICLEEVKPTLNVLPKSITAFKSLRG--SAGSYPELDKWVALLASDIMKRVQLDTSRNHR 495
Query: 225 IAHTLTL 231
+ + TL
Sbjct: 496 VPKSCTL 502
>gi|432439586|ref|ZP_19681949.1| DNA polymerase IV [Escherichia coli KTE189]
gi|432444710|ref|ZP_19687019.1| DNA polymerase IV [Escherichia coli KTE191]
gi|433012430|ref|ZP_20200815.1| DNA polymerase IV [Escherichia coli KTE104]
gi|433021974|ref|ZP_20210004.1| DNA polymerase IV [Escherichia coli KTE106]
gi|433325955|ref|ZP_20402923.1| DNA polymerase IV [Escherichia coli J96]
gi|430969396|gb|ELC86500.1| DNA polymerase IV [Escherichia coli KTE189]
gi|430976085|gb|ELC92960.1| DNA polymerase IV [Escherichia coli KTE191]
gi|431536262|gb|ELI12591.1| DNA polymerase IV [Escherichia coli KTE104]
gi|431541300|gb|ELI16740.1| DNA polymerase IV [Escherichia coli KTE106]
gi|432345767|gb|ELL40260.1| DNA polymerase IV [Escherichia coli J96]
Length = 351
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|422804340|ref|ZP_16852772.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
gi|324114892|gb|EGC08858.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
Length = 351
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300929520|ref|ZP_07144986.1| DNA polymerase IV, partial [Escherichia coli MS 187-1]
gi|300462519|gb|EFK26012.1| DNA polymerase IV [Escherichia coli MS 187-1]
Length = 328
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432356608|ref|ZP_19599855.1| DNA polymerase IV [Escherichia coli KTE4]
gi|430879418|gb|ELC02749.1| DNA polymerase IV [Escherichia coli KTE4]
Length = 351
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPSV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|424817372|ref|ZP_18242523.1| DNA polymerase IV [Escherichia fergusonii ECD227]
gi|325498392|gb|EGC96251.1| DNA polymerase IV [Escherichia fergusonii ECD227]
Length = 351
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPTEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|343085717|ref|YP_004775012.1| DNA polymerase IV [Cyclobacterium marinum DSM 745]
gi|342354251|gb|AEL26781.1| DNA polymerase IV [Cyclobacterium marinum DSM 745]
Length = 358
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L LI ++R ++ ++T SAGI++NK LAK+AS +NKP Q + + L+
Sbjct: 118 LPSATLIAKDIRKKIKEQTGLNASAGISYNKFLAKIASDLNKPNGQAVITPGEAEAFLEK 177
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G + + N G+ DL ++S L +G +G + I RGI E
Sbjct: 178 LPIEKFYGIGKVMAKKM-NGFGIYNGYDLKQYSLPFLTGRFG-KSGLHFYKIVRGIHESE 235
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G ++F ++++Q L E + LE+N+ I T+T+
Sbjct: 236 VKPNRIRKSIGMERTFDN-----DLSAMQAIEASLKENILPEFFRRLEKNQAIGRTITI 289
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 122/258 (47%), Gaps = 38/258 (14%)
Query: 2 LAETPPESLDEVDEEALK-----SHILGLESKDG-----NDSKA-TVKEWLCRCDADHRD 50
L + PES E D + L+ S+ ++S+ G ND+ + + + +C D +
Sbjct: 244 LIQIDPESSQETDAKLLQIDDPESYSTDMKSQHGSNESLNDTDSHQIDDLICDSDQCLPN 303
Query: 51 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL- 109
C +V+E+R ++ T+ T SAGIA NKMLAK+AS MNKP Q +P S K L
Sbjct: 304 SYWECAEKVVSEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILE 363
Query: 110 -LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK---LQESYGFNTGTWLWNIA 165
+ LPI+K+ + GK+ + N LG+ T D+ DK L+ + + + NI
Sbjct: 364 FIRKLPIRKVSGI-GKVTEKMLNALGIVTGADIY----DKRGLLRLMFSKCSYDYFMNIC 418
Query: 166 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW----LNQLCEELSERLCSDLEQ 221
GI V + KS + ++FP W L Q C +L L ++E+
Sbjct: 419 LGIGSCTVHSEWERKSISTERTFPDI-----------WKPSELFQKCHKLCYSLTEEVEE 467
Query: 222 N--KRIAHTLTLHASAFK 237
+ K TL L SAF+
Sbjct: 468 SNIKGKTVTLKLKTSAFE 485
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI ++R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K
Sbjct: 123 LIAKQIRDRIKEKTGLNASAGISINKFIAKIASDVNKPNGQKTVQPEEVIAFLEELDIRK 182
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ LG+ T DL SE+ L E +G +GT +N+ RGI EV+
Sbjct: 183 FYGV-GKVTAEKMYRLGIFTGKDLKLKSEEYLTEHFG-KSGTHFYNVVRGIHLSEVKPHR 240
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F + ++S L +L E ++E + L ++K T+TL
Sbjct: 241 IRKSLGAERTFN-----ENISSEIFMLERL-ENIAEEIERRLTKSKVAGKTITL 288
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V+ L LP+ ++
Sbjct: 124 IARTIREQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVEAFLTPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+A
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEADQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L++ +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LSEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|260813031|ref|XP_002601223.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
gi|229286515|gb|EEN57235.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
Length = 397
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 49 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 108
R K LACG I E+R + + TC AGIAHNK+LAKL +G +KP QQT++ V
Sbjct: 151 RHKRLACGSQIAAEMRQALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQTSLLPGGVGK 210
Query: 109 LLDSLPI-KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 167
L+ +L + + +G + LQ LG++TV DL D LQ +G T + + RG
Sbjct: 211 LMGTLKTARNIPGIGSRTFKRLQT-LGISTVQDLQDAPADVLQAEFGSQTAQVMQQLCRG 269
Query: 168 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ---HWLNQLCEELSERLCSDLEQNKR 224
+ V P++ SF K AS+Q + L + L +RL D R
Sbjct: 270 VDPSPVTPTGPPQTISDEDSF------KKCASLQDAKERMTGLLQSLMKRLKGD----GR 319
Query: 225 IAHTLTLHASAFKSSD 240
H L + +S+
Sbjct: 320 FPHVLRVTVRKLSASN 335
>gi|41057958|gb|AAR98936.1| SOS inducible DNA polymerase, partial [Shigella flexneri 5a str.
M90T]
Length = 324
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|420369939|ref|ZP_14870578.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
gi|391320753|gb|EIQ77562.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
Length = 288
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L++L I+K
Sbjct: 126 LIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNPEEVLPFLEALDIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ T DL S + LQE +G +G +N+ RGI EV+
Sbjct: 186 FYGV-GKVTAEKMYQLGIFTGNDLKSKSLEFLQEKFG-KSGNHYYNVVRGIHLSEVKPHR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS G+ ++F + ++S L +L E ++E + L+++ T+TL K
Sbjct: 244 IRKSLGAERTFS-----ENISSEIFMLERL-ENIAEEIERRLKKSNVAGKTVTL-----K 292
Query: 238 SSDSDSRKKFPSKSCP 253
SD K SK+ P
Sbjct: 293 IKYSDFTLKTRSKTLP 308
>gi|358372217|dbj|GAA88822.1| DNA damage repair protein Mus42 [Aspergillus kawachii IFO 4308]
Length = 1166
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +LR V KET S GI N +LAK+A KPA Q + +V + +L ++ +
Sbjct: 510 VADDLRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDYIGNLTVQDL 569
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G LGT L++ LGV V D+ + + D+L S G TG +W ARGI EV +L
Sbjct: 570 PGVGYSLGTKLED-LGVKIVKDVRELTRDRLTTSLGPKTGIKIWEYARGIDRTEVGNEVL 628
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 629 RKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 673
>gi|19568865|gb|AAL91944.1|AF483081_1 DNA polymerase DinB [Escherichia coli]
gi|19568869|gb|AAL91946.1|AF483083_1 DNA polymerase DinB [Escherichia coli]
gi|19568871|gb|AAL91947.1|AF483084_1 DNA polymerase DinB [Escherichia coli]
gi|19568873|gb|AAL91948.1|AF483085_1 DNA polymerase DinB [Escherichia coli]
gi|19568875|gb|AAL91949.1|AF483086_1 DNA polymerase DinB [Escherichia coli]
gi|19568877|gb|AAL91950.1|AF483087_1 DNA polymerase DinB [Escherichia coli]
gi|19568879|gb|AAL91951.1|AF483088_1 DNA polymerase DinB [Escherichia coli]
gi|19568881|gb|AAL91952.1|AF483089_1 DNA polymerase DinB [Escherichia coli]
gi|19568889|gb|AAL91956.1|AF483093_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
++ E+R ++ +T T SAGI+ NK LAK+AS NKP Q T+P V L++L +
Sbjct: 123 ATMVAQEIREKIFSKTGLTASAGISINKFLAKIASDWNKPNGQKTIPPEEVLSFLENLDV 182
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
KK +G K + LG+ + DL S L++ +G +G + + RGI EV+
Sbjct: 183 KKFHGIGAKTKLKMYG-LGIYSGNDLKLQSAAFLEKHFG-KSGIHYFKVVRGIHTSEVKP 240
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+PKS G+ ++F +T S + ++ + + +S L ++NK T+TL
Sbjct: 241 HRIPKSLGAERTF------ETNLSSEVYIEEKLKLISALLEKRTKKNKVAGKTITL 290
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGIQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|41057946|gb|AAR98930.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 324
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|19568905|gb|AAL91964.1|AF483101_1 DNA polymerase DinB [Escherichia coli]
gi|19568911|gb|AAL91967.1|AF483104_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|422373049|ref|ZP_16453380.1| DNA polymerase IV [Escherichia coli MS 60-1]
gi|324015566|gb|EGB84785.1| DNA polymerase IV [Escherichia coli MS 60-1]
Length = 351
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+
Sbjct: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 179 AKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNS 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 237 ERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057938|gb|AAR98926.1| SOS inducible DNA polymerase, partial [Escherichia coli]
gi|41057940|gb|AAR98927.1| SOS inducible DNA polymerase, partial [Escherichia coli]
gi|41057956|gb|AAR98935.1| SOS inducible DNA polymerase, partial [Shigella sonnei]
Length = 324
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|19568893|gb|AAL91958.1|AF483095_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|19568883|gb|AAL91953.1|AF483090_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|41057944|gb|AAR98929.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|261338292|ref|ZP_05966176.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
gi|270276954|gb|EFA22808.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
Length = 502
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 21/228 (9%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R QV + TCS GIA NK++AK+AS KP +P + + +P++ +
Sbjct: 140 IARWIRAQVAERFHITCSVGIACNKLVAKMASTNAKPDGMLLIPANRSADFVQLMPLRGI 199
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT-WLWNIARGISGEEVQARL 177
+G L L N G+T+V +L +SE +L ++ G +G LW ARGI EV +
Sbjct: 200 PGIGPALERRL-NSWGITSVTELATYSEQELAQATGSASGAHHLWQAARGIDLREVVTQR 258
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS GS +F + A V+ L++ CE+++ S L + + +A T+T+
Sbjct: 259 EEKSIGSEHTF--AQDTTDAAVVRSLLHRCCEDVA----STLRRKELLARTVTV------ 306
Query: 238 SSDSDSRKKFPSKSCPLRYGTAKIQEDT-FNLFQAGLREFLGSFGVKT 284
+ + P S R T + D +L+ A L + G++T
Sbjct: 307 ------KLRLPDLSYMTRSYTMERPTDMGADLYAATLDQLYTMLGMRT 348
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R Q+ ET T SAG+A NK LAK+AS NKP Q + S V L LP++K+ +G
Sbjct: 129 IRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQYVIRPSRVLEFLQPLPVRKVPGVG 188
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
+ L+ +LG+ TVGDL + +L+ +G G L+ +ARGI EVQ
Sbjct: 189 KVMQARLE-QLGIHTVGDLATHAAQELEHYFG-RYGRRLYELARGIDDREVQ 238
>gi|88800716|ref|ZP_01116275.1| DNA polymerase IV [Reinekea blandensis MED297]
gi|88776580|gb|EAR07796.1| DNA polymerase IV [Reinekea sp. MED297]
Length = 365
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 4/160 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ +R ++++ET T SAGIA NK LAK+AS KP ++ +V L SLP+KK
Sbjct: 121 MLAEHIRQEIVQETGITVSAGIAPNKFLAKVASEWRKPNGLYSISPEAVDEFLSSLPLKK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G K L E G+ T GD+L++S +L + +G +G WL+ ARGI V R
Sbjct: 181 INGVGSKFSQKLA-EHGLHTCGDVLRWSLPRLTQYFG-KSGLWLYQRARGIDHRPVGVRS 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 217
KS +F A ++ Q L L + L+ RL +
Sbjct: 239 DRKSLSVEHTFDTDLAGESACLTQ--LTPLLDTLNRRLAA 276
>gi|418069525|ref|ZP_12706802.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
gi|357536056|gb|EHJ20087.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
Length = 374
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 7/220 (3%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 135 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 194
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 195 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 252
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
+ KS G +++ P L T V L+ + ++L++ + + K + L L S
Sbjct: 253 QRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 308
Query: 236 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 274
F++ + +R +F Y AK D F G+R
Sbjct: 309 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E+R ++ E T SAGI+ NK +AK+AS +NKP Q TV + L+ LPI+K
Sbjct: 126 LLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDINKPNGQKTVNPDEIIPFLEELPIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ T +LG+ T DL S + L++ +G +G + +++ RGI EV+
Sbjct: 186 FYGV-GKVTTEKMYQLGIFTGSDLKSKSLEFLEKHFG-KSGAFYYSVVRGIHNSEVKPHR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS + +F ++S L QL ER+ LE+ + H ++ K
Sbjct: 244 ITKSVAAEHTFD-----VNLSSEIFMLEQL-----ERIAVSLEKRLK-RHNVSGKTVTLK 292
Query: 238 SSDSDSRKKFPSKSCP 253
SD ++ SK+ P
Sbjct: 293 IKYSDFTQQTRSKTLP 308
>gi|270290971|ref|ZP_06197194.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
gi|270280367|gb|EFA26202.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
Length = 374
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 7/220 (3%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 135 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 194
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 195 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 252
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
+ KS G +++ P L T V L+ + ++L++ + + K + L L S
Sbjct: 253 QRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 308
Query: 236 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 274
F++ + +R +F Y AK D F G+R
Sbjct: 309 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|335042079|ref|ZP_08535106.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
gi|333788693|gb|EGL54575.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
Length = 362
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D + + LI ++ ++L+ET T SAG+++NK LAK+AS M+KP +
Sbjct: 110 LDVTYTEAFNGSATLIAQAIKREILQETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRP 169
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ + +LP+ K +G T + N LG+ T DL + S +L E +G G + +N
Sbjct: 170 EQGEAFVAALPVGKFHGIGPATETKMHN-LGIHTGKDLREKSLTELTERFG-KAGQYYYN 227
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
IAR I V+++ + KS G +F + + S+ +L +L+ER+ L +
Sbjct: 228 IARAIDERPVRSQRIRKSLGKETTFA-----EDIHSIPELTAKLL-DLAERVFESLVKQN 281
Query: 224 RIAHTLTL 231
A T+T+
Sbjct: 282 LKARTITV 289
>gi|432552289|ref|ZP_19789022.1| DNA polymerase IV [Escherichia coli KTE47]
gi|431087216|gb|ELD93215.1| DNA polymerase IV [Escherichia coli KTE47]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568863|gb|AAL91943.1|AF483080_1 DNA polymerase DinB [Escherichia coli]
Length = 241
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 67 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 126
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 127 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 184
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 185 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 219
>gi|41057948|gb|AAR98931.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 324
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+
Sbjct: 101 ATLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 160
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 161 AKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNS 218
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 219 ERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|432858656|ref|ZP_20085059.1| DNA polymerase IV [Escherichia coli KTE146]
gi|431408412|gb|ELG91598.1| DNA polymerase IV [Escherichia coli KTE146]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|218703546|ref|YP_002411065.1| DNA polymerase IV [Escherichia coli UMN026]
gi|293403377|ref|ZP_06647468.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298378989|ref|ZP_06988870.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300899474|ref|ZP_07117722.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|387605765|ref|YP_006094621.1| DNA polymerase IV [Escherichia coli 042]
gi|419937299|ref|ZP_14454208.1| DNA polymerase IV [Escherichia coli 576-1]
gi|432351904|ref|ZP_19595216.1| DNA polymerase IV [Escherichia coli KTE2]
gi|432400372|ref|ZP_19643133.1| DNA polymerase IV [Escherichia coli KTE26]
gi|432429401|ref|ZP_19671865.1| DNA polymerase IV [Escherichia coli KTE181]
gi|432459232|ref|ZP_19701398.1| DNA polymerase IV [Escherichia coli KTE204]
gi|432474291|ref|ZP_19716304.1| DNA polymerase IV [Escherichia coli KTE208]
gi|432492561|ref|ZP_19734401.1| DNA polymerase IV [Escherichia coli KTE213]
gi|432520899|ref|ZP_19758066.1| DNA polymerase IV [Escherichia coli KTE228]
gi|432541115|ref|ZP_19777992.1| DNA polymerase IV [Escherichia coli KTE235]
gi|432629807|ref|ZP_19865760.1| DNA polymerase IV [Escherichia coli KTE80]
gi|432639371|ref|ZP_19875218.1| DNA polymerase IV [Escherichia coli KTE83]
gi|432664449|ref|ZP_19900047.1| DNA polymerase IV [Escherichia coli KTE116]
gi|432773442|ref|ZP_20007734.1| DNA polymerase IV [Escherichia coli KTE54]
gi|432837814|ref|ZP_20071308.1| DNA polymerase IV [Escherichia coli KTE140]
gi|432884160|ref|ZP_20099185.1| DNA polymerase IV [Escherichia coli KTE158]
gi|432909829|ref|ZP_20117077.1| DNA polymerase IV [Escherichia coli KTE190]
gi|433017218|ref|ZP_20205491.1| DNA polymerase IV [Escherichia coli KTE105]
gi|433051502|ref|ZP_20238748.1| DNA polymerase IV [Escherichia coli KTE122]
gi|433066408|ref|ZP_20253260.1| DNA polymerase IV [Escherichia coli KTE128]
gi|433157182|ref|ZP_20342062.1| DNA polymerase IV [Escherichia coli KTE177]
gi|433176648|ref|ZP_20361125.1| DNA polymerase IV [Escherichia coli KTE82]
gi|433201685|ref|ZP_20385499.1| DNA polymerase IV [Escherichia coli KTE95]
gi|59889801|emb|CAH19157.1| Damage inducible protein P [Escherichia coli 042]
gi|218430643|emb|CAR11509.1| DNA polymerase IV [Escherichia coli UMN026]
gi|284920065|emb|CBG33122.1| DNA polymerase IV [Escherichia coli 042]
gi|291429230|gb|EFF02250.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298280102|gb|EFI21606.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300356953|gb|EFJ72823.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|388398069|gb|EIL59011.1| DNA polymerase IV [Escherichia coli 576-1]
gi|430880894|gb|ELC04158.1| DNA polymerase IV [Escherichia coli KTE2]
gi|430930487|gb|ELC50988.1| DNA polymerase IV [Escherichia coli KTE26]
gi|430947998|gb|ELC67680.1| DNA polymerase IV [Escherichia coli KTE181]
gi|430992835|gb|ELD09196.1| DNA polymerase IV [Escherichia coli KTE204]
gi|431010231|gb|ELD24579.1| DNA polymerase IV [Escherichia coli KTE208]
gi|431013536|gb|ELD27266.1| DNA polymerase IV [Escherichia coli KTE213]
gi|431045862|gb|ELD56000.1| DNA polymerase IV [Escherichia coli KTE228]
gi|431064734|gb|ELD73593.1| DNA polymerase IV [Escherichia coli KTE235]
gi|431174927|gb|ELE74959.1| DNA polymerase IV [Escherichia coli KTE80]
gi|431185687|gb|ELE85392.1| DNA polymerase IV [Escherichia coli KTE83]
gi|431205008|gb|ELF03518.1| DNA polymerase IV [Escherichia coli KTE116]
gi|431321128|gb|ELG08743.1| DNA polymerase IV [Escherichia coli KTE54]
gi|431392151|gb|ELG75752.1| DNA polymerase IV [Escherichia coli KTE140]
gi|431420388|gb|ELH02673.1| DNA polymerase IV [Escherichia coli KTE158]
gi|431447905|gb|ELH28624.1| DNA polymerase IV [Escherichia coli KTE190]
gi|431537801|gb|ELI13914.1| DNA polymerase IV [Escherichia coli KTE105]
gi|431576189|gb|ELI48888.1| DNA polymerase IV [Escherichia coli KTE122]
gi|431592583|gb|ELI63155.1| DNA polymerase IV [Escherichia coli KTE128]
gi|431682845|gb|ELJ48493.1| DNA polymerase IV [Escherichia coli KTE177]
gi|431711199|gb|ELJ75553.1| DNA polymerase IV [Escherichia coli KTE82]
gi|431726787|gb|ELJ90556.1| DNA polymerase IV [Escherichia coli KTE95]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417826337|ref|ZP_12472917.1| impB/mucB/samB family protein [Shigella flexneri J1713]
gi|335578251|gb|EGM63476.1| impB/mucB/samB family protein [Shigella flexneri J1713]
Length = 343
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 113 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 172
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 173 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 230
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|41057952|gb|AAR98933.1| SOS inducible DNA polymerase, partial [Shigella dysenteriae]
Length = 324
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|301019021|ref|ZP_07183237.1| DNA polymerase IV [Escherichia coli MS 196-1]
gi|299882426|gb|EFI90637.1| DNA polymerase IV [Escherichia coli MS 196-1]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|419298502|ref|ZP_13840520.1| DNA polymerase IV [Escherichia coli DEC11C]
gi|378157078|gb|EHX18120.1| DNA polymerase IV [Escherichia coli DEC11C]
Length = 357
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 127 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 186
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 187 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 244
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 245 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 279
>gi|24111721|ref|NP_706231.1| DNA polymerase IV [Shigella flexneri 2a str. 301]
gi|30061848|ref|NP_836019.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|384541857|ref|YP_005725918.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|415859559|ref|ZP_11533758.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|417700311|ref|ZP_12349456.1| DNA polymerase IV [Shigella flexneri K-218]
gi|417705742|ref|ZP_12354814.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|417710878|ref|ZP_12359885.1| DNA polymerase IV [Shigella flexneri K-272]
gi|417715544|ref|ZP_12364480.1| DNA polymerase IV [Shigella flexneri K-227]
gi|417721265|ref|ZP_12370115.1| DNA polymerase IV [Shigella flexneri K-304]
gi|417726647|ref|ZP_12375394.1| DNA polymerase IV [Shigella flexneri K-671]
gi|417731847|ref|ZP_12380519.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|417737137|ref|ZP_12385746.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|417741777|ref|ZP_12390331.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|418253475|ref|ZP_12878500.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
gi|420318723|ref|ZP_14820582.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|420329470|ref|ZP_14831180.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|420339821|ref|ZP_14841352.1| DNA polymerase IV [Shigella flexneri K-404]
gi|81723732|sp|Q83M86.1|DPO4_SHIFL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|24050502|gb|AAN41938.1| damage-inducible protein P [Shigella flexneri 2a str. 301]
gi|30040092|gb|AAP15825.1| damage-inducible protein P [Shigella flexneri 2a str. 2457T]
gi|281599641|gb|ADA72625.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|313646637|gb|EFS11096.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|332761629|gb|EGJ91909.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|332761724|gb|EGJ92003.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|332764446|gb|EGJ94679.1| DNA polymerase IV [Shigella flexneri K-671]
gi|332768578|gb|EGJ98760.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|333008732|gb|EGK28196.1| DNA polymerase IV [Shigella flexneri K-218]
gi|333009710|gb|EGK29160.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|333010782|gb|EGK30208.1| DNA polymerase IV [Shigella flexneri K-272]
gi|333021280|gb|EGK40533.1| DNA polymerase IV [Shigella flexneri K-227]
gi|333022110|gb|EGK41353.1| DNA polymerase IV [Shigella flexneri K-304]
gi|391255077|gb|EIQ14230.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|391260219|gb|EIQ19283.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|391274563|gb|EIQ33370.1| DNA polymerase IV [Shigella flexneri K-404]
gi|397901349|gb|EJL17695.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|170679693|ref|YP_001742392.1| DNA polymerase IV [Escherichia coli SMS-3-5]
gi|170517411|gb|ACB15589.1| DNA polymerase IV [Escherichia coli SMS-3-5]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|331671823|ref|ZP_08372619.1| DNA polymerase IV [Escherichia coli TA280]
gi|331070812|gb|EGI42171.1| DNA polymerase IV [Escherichia coli TA280]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|91209319|ref|YP_539305.1| DNA polymerase IV [Escherichia coli UTI89]
gi|110640467|ref|YP_668195.1| DNA polymerase IV [Escherichia coli 536]
gi|117622533|ref|YP_851446.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|191171433|ref|ZP_03032982.1| DNA polymerase IV [Escherichia coli F11]
gi|218557187|ref|YP_002390100.1| DNA polymerase IV [Escherichia coli S88]
gi|237707750|ref|ZP_04538231.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|331645437|ref|ZP_08346541.1| DNA polymerase IV [Escherichia coli M605]
gi|386597994|ref|YP_006099500.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|386605783|ref|YP_006112083.1| DNA polymerase IV [Escherichia coli UM146]
gi|416334115|ref|ZP_11671134.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|417082657|ref|ZP_11950885.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|417287701|ref|ZP_12074987.1| DNA polymerase IV [Escherichia coli TW07793]
gi|417660855|ref|ZP_12310436.1| DNA polymerase 4 [Escherichia coli AA86]
gi|419915704|ref|ZP_14434064.1| DNA polymerase IV [Escherichia coli KD1]
gi|419945739|ref|ZP_14462174.1| DNA polymerase IV [Escherichia coli HM605]
gi|422358413|ref|ZP_16439072.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|422748672|ref|ZP_16802585.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|422752926|ref|ZP_16806753.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|422838798|ref|ZP_16886770.1| DNA polymerase IV [Escherichia coli H397]
gi|425298462|ref|ZP_18688512.1| DNA polymerase IV [Escherichia coli 07798]
gi|432361031|ref|ZP_19604228.1| DNA polymerase IV [Escherichia coli KTE5]
gi|432405138|ref|ZP_19647861.1| DNA polymerase IV [Escherichia coli KTE28]
gi|432464294|ref|ZP_19706402.1| DNA polymerase IV [Escherichia coli KTE205]
gi|432469580|ref|ZP_19711635.1| DNA polymerase IV [Escherichia coli KTE206]
gi|432572272|ref|ZP_19808764.1| DNA polymerase IV [Escherichia coli KTE55]
gi|432582388|ref|ZP_19818798.1| DNA polymerase IV [Escherichia coli KTE57]
gi|432586577|ref|ZP_19822949.1| DNA polymerase IV [Escherichia coli KTE58]
gi|432596147|ref|ZP_19832436.1| DNA polymerase IV [Escherichia coli KTE62]
gi|432711936|ref|ZP_19946988.1| DNA polymerase IV [Escherichia coli KTE8]
gi|432753075|ref|ZP_19987644.1| DNA polymerase IV [Escherichia coli KTE22]
gi|432777132|ref|ZP_20011386.1| DNA polymerase IV [Escherichia coli KTE59]
gi|432785925|ref|ZP_20020093.1| DNA polymerase IV [Escherichia coli KTE65]
gi|432800550|ref|ZP_20034541.1| DNA polymerase IV [Escherichia coli KTE84]
gi|432819598|ref|ZP_20053312.1| DNA polymerase IV [Escherichia coli KTE118]
gi|432825726|ref|ZP_20059383.1| DNA polymerase IV [Escherichia coli KTE123]
gi|432892907|ref|ZP_20105012.1| DNA polymerase IV [Escherichia coli KTE165]
gi|433003791|ref|ZP_20192229.1| DNA polymerase IV [Escherichia coli KTE227]
gi|433010996|ref|ZP_20199401.1| DNA polymerase IV [Escherichia coli KTE229]
gi|433071227|ref|ZP_20257936.1| DNA polymerase IV [Escherichia coli KTE129]
gi|433076410|ref|ZP_20262986.1| DNA polymerase IV [Escherichia coli KTE131]
gi|433118779|ref|ZP_20304496.1| DNA polymerase IV [Escherichia coli KTE157]
gi|433152409|ref|ZP_20337379.1| DNA polymerase IV [Escherichia coli KTE176]
gi|433162032|ref|ZP_20346800.1| DNA polymerase IV [Escherichia coli KTE179]
gi|433166968|ref|ZP_20351652.1| DNA polymerase IV [Escherichia coli KTE180]
gi|433181738|ref|ZP_20366046.1| DNA polymerase IV [Escherichia coli KTE85]
gi|122424895|sp|Q1RFU0.1|DPO4_ECOUT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122958567|sp|Q0TL85.1|DPO4_ECOL5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027664|sp|A1A7U2.1|DPO4_ECOK1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|91070893|gb|ABE05774.1| damage-inducible protein P; DNA polymerase IV [Escherichia coli
UTI89]
gi|110342059|gb|ABG68296.1| DNA-damage-inducible protein P (DinP) [Escherichia coli 536]
gi|115511657|gb|ABI99731.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|190908367|gb|EDV67957.1| DNA polymerase IV [Escherichia coli F11]
gi|218363956|emb|CAR01621.1| DNA polymerase IV [Escherichia coli S88]
gi|226898960|gb|EEH85219.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|294491183|gb|ADE89939.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|307628267|gb|ADN72571.1| DNA polymerase IV [Escherichia coli UM146]
gi|315287741|gb|EFU47144.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|320197284|gb|EFW71900.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|323953127|gb|EGB48995.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|323958691|gb|EGB54392.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|330910073|gb|EGH38583.1| DNA polymerase 4 [Escherichia coli AA86]
gi|331045599|gb|EGI17725.1| DNA polymerase IV [Escherichia coli M605]
gi|355353195|gb|EHG02365.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|371611722|gb|EHO00242.1| DNA polymerase IV [Escherichia coli H397]
gi|386248486|gb|EII94658.1| DNA polymerase IV [Escherichia coli TW07793]
gi|388383451|gb|EIL45222.1| DNA polymerase IV [Escherichia coli KD1]
gi|388414873|gb|EIL74817.1| DNA polymerase IV [Escherichia coli HM605]
gi|408221465|gb|EKI45398.1| DNA polymerase IV [Escherichia coli 07798]
gi|430891266|gb|ELC13802.1| DNA polymerase IV [Escherichia coli KTE5]
gi|430932634|gb|ELC53053.1| DNA polymerase IV [Escherichia coli KTE28]
gi|430997045|gb|ELD13312.1| DNA polymerase IV [Escherichia coli KTE205]
gi|431000294|gb|ELD16356.1| DNA polymerase IV [Escherichia coli KTE206]
gi|431111366|gb|ELE15270.1| DNA polymerase IV [Escherichia coli KTE55]
gi|431119404|gb|ELE22403.1| DNA polymerase IV [Escherichia coli KTE57]
gi|431123857|gb|ELE26511.1| DNA polymerase IV [Escherichia coli KTE58]
gi|431133814|gb|ELE35780.1| DNA polymerase IV [Escherichia coli KTE62]
gi|431259451|gb|ELF51814.1| DNA polymerase IV [Escherichia coli KTE8]
gi|431305856|gb|ELF94173.1| DNA polymerase IV [Escherichia coli KTE22]
gi|431330706|gb|ELG17970.1| DNA polymerase IV [Escherichia coli KTE59]
gi|431341856|gb|ELG28852.1| DNA polymerase IV [Escherichia coli KTE65]
gi|431351446|gb|ELG38233.1| DNA polymerase IV [Escherichia coli KTE84]
gi|431370600|gb|ELG56393.1| DNA polymerase IV [Escherichia coli KTE118]
gi|431375110|gb|ELG60454.1| DNA polymerase IV [Escherichia coli KTE123]
gi|431425359|gb|ELH07429.1| DNA polymerase IV [Escherichia coli KTE165]
gi|431517112|gb|ELH94634.1| DNA polymerase IV [Escherichia coli KTE227]
gi|431519208|gb|ELH96660.1| DNA polymerase IV [Escherichia coli KTE229]
gi|431594676|gb|ELI64955.1| DNA polymerase IV [Escherichia coli KTE129]
gi|431602470|gb|ELI71903.1| DNA polymerase IV [Escherichia coli KTE131]
gi|431649763|gb|ELJ17105.1| DNA polymerase IV [Escherichia coli KTE157]
gi|431678465|gb|ELJ44461.1| DNA polymerase IV [Escherichia coli KTE176]
gi|431692822|gb|ELJ58245.1| DNA polymerase IV [Escherichia coli KTE179]
gi|431694762|gb|ELJ60107.1| DNA polymerase IV [Escherichia coli KTE180]
gi|431712483|gb|ELJ76777.1| DNA polymerase IV [Escherichia coli KTE85]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300934932|ref|ZP_07149986.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|432678680|ref|ZP_19914084.1| DNA polymerase IV [Escherichia coli KTE143]
gi|300459838|gb|EFK23331.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|431225324|gb|ELF22528.1| DNA polymerase IV [Escherichia coli KTE143]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568901|gb|AAL91962.1|AF483099_1 DNA polymerase DinB [Escherichia coli]
gi|19568903|gb|AAL91963.1|AF483100_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|432379911|ref|ZP_19622875.1| DNA polymerase IV [Escherichia coli KTE15]
gi|432385678|ref|ZP_19628579.1| DNA polymerase IV [Escherichia coli KTE16]
gi|432512492|ref|ZP_19749736.1| DNA polymerase IV [Escherichia coli KTE224]
gi|432609957|ref|ZP_19846131.1| DNA polymerase IV [Escherichia coli KTE72]
gi|432644660|ref|ZP_19880465.1| DNA polymerase IV [Escherichia coli KTE86]
gi|432654294|ref|ZP_19890014.1| DNA polymerase IV [Escherichia coli KTE93]
gi|432697601|ref|ZP_19932774.1| DNA polymerase IV [Escherichia coli KTE169]
gi|432744220|ref|ZP_19978926.1| DNA polymerase IV [Escherichia coli KTE43]
gi|432902591|ref|ZP_20112298.1| DNA polymerase IV [Escherichia coli KTE194]
gi|432942026|ref|ZP_20139442.1| DNA polymerase IV [Escherichia coli KTE183]
gi|432983976|ref|ZP_20172716.1| DNA polymerase IV [Escherichia coli KTE215]
gi|433037183|ref|ZP_20224807.1| DNA polymerase IV [Escherichia coli KTE113]
gi|433099795|ref|ZP_20285912.1| DNA polymerase IV [Escherichia coli KTE145]
gi|433142794|ref|ZP_20327977.1| DNA polymerase IV [Escherichia coli KTE168]
gi|433186970|ref|ZP_20371107.1| DNA polymerase IV [Escherichia coli KTE88]
gi|430910511|gb|ELC31821.1| DNA polymerase IV [Escherichia coli KTE16]
gi|430911890|gb|ELC33141.1| DNA polymerase IV [Escherichia coli KTE15]
gi|431045079|gb|ELD55328.1| DNA polymerase IV [Escherichia coli KTE224]
gi|431151780|gb|ELE52791.1| DNA polymerase IV [Escherichia coli KTE72]
gi|431184873|gb|ELE84616.1| DNA polymerase IV [Escherichia coli KTE86]
gi|431195720|gb|ELE94684.1| DNA polymerase IV [Escherichia coli KTE93]
gi|431247268|gb|ELF41506.1| DNA polymerase IV [Escherichia coli KTE169]
gi|431296065|gb|ELF85793.1| DNA polymerase IV [Escherichia coli KTE43]
gi|431437832|gb|ELH19339.1| DNA polymerase IV [Escherichia coli KTE194]
gi|431456001|gb|ELH36350.1| DNA polymerase IV [Escherichia coli KTE183]
gi|431506412|gb|ELH85008.1| DNA polymerase IV [Escherichia coli KTE215]
gi|431556226|gb|ELI30015.1| DNA polymerase IV [Escherichia coli KTE113]
gi|431623391|gb|ELI92062.1| DNA polymerase IV [Escherichia coli KTE145]
gi|431667270|gb|ELJ33860.1| DNA polymerase IV [Escherichia coli KTE168]
gi|431710438|gb|ELJ74814.1| DNA polymerase IV [Escherichia coli KTE88]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|425303750|ref|ZP_18693556.1| DNA polymerase IV [Escherichia coli N1]
gi|408232494|gb|EKI55692.1| DNA polymerase IV [Escherichia coli N1]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|419146340|ref|ZP_13691037.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|421680998|ref|ZP_16120832.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
gi|378002027|gb|EHV65082.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|404342029|gb|EJZ68427.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
Length = 343
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 113 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 172
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 173 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 230
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|218550064|ref|YP_002383855.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|416895677|ref|ZP_11925561.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|417114256|ref|ZP_11965634.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|422782942|ref|ZP_16835727.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|422802135|ref|ZP_16850629.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|432430401|ref|ZP_19672847.1| DNA polymerase IV [Escherichia coli KTE187]
gi|432600770|ref|ZP_19837026.1| DNA polymerase IV [Escherichia coli KTE66]
gi|432842572|ref|ZP_20075994.1| DNA polymerase IV [Escherichia coli KTE141]
gi|432848028|ref|ZP_20079900.1| DNA polymerase IV [Escherichia coli KTE144]
gi|433206413|ref|ZP_20390118.1| DNA polymerase IV [Escherichia coli KTE97]
gi|218357605|emb|CAQ90244.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|323965213|gb|EGB60671.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|323976250|gb|EGB71343.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|327254575|gb|EGE66191.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|386141860|gb|EIG83006.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|430956759|gb|ELC75429.1| DNA polymerase IV [Escherichia coli KTE187]
gi|431144809|gb|ELE46503.1| DNA polymerase IV [Escherichia coli KTE66]
gi|431397599|gb|ELG81045.1| DNA polymerase IV [Escherichia coli KTE141]
gi|431402377|gb|ELG85689.1| DNA polymerase IV [Escherichia coli KTE144]
gi|431733416|gb|ELJ96852.1| DNA polymerase IV [Escherichia coli KTE97]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057950|gb|AAR98932.1| SOS inducible DNA polymerase, partial [Shigella flexneri]
Length = 322
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|16128217|ref|NP_414766.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|74310874|ref|YP_309293.1| DNA polymerase IV [Shigella sonnei Ss046]
gi|170021341|ref|YP_001726295.1| DNA polymerase IV [Escherichia coli ATCC 8739]
gi|170079858|ref|YP_001729178.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188492262|ref|ZP_02999532.1| DNA polymerase IV [Escherichia coli 53638]
gi|194438229|ref|ZP_03070321.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218552837|ref|YP_002385750.1| DNA polymerase IV [Escherichia coli IAI1]
gi|218693716|ref|YP_002401383.1| DNA polymerase IV [Escherichia coli 55989]
gi|238899621|ref|YP_002925417.1| DNA polymerase IV [Escherichia coli BW2952]
gi|251783788|ref|YP_002998092.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253774744|ref|YP_003037575.1| DNA polymerase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160345|ref|YP_003043453.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|254287148|ref|YP_003052896.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|300947288|ref|ZP_07161491.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|300955690|ref|ZP_07168040.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|301643542|ref|ZP_07243584.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|312970357|ref|ZP_07784538.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|331640760|ref|ZP_08341895.1| DNA polymerase IV [Escherichia coli H736]
gi|383176868|ref|YP_005454873.1| DNA polymerase IV [Shigella sonnei 53G]
gi|386279278|ref|ZP_10056964.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386596884|ref|YP_006093284.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|386612415|ref|YP_006132081.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|386703468|ref|YP_006167315.1| DNA polymerase IV [Escherichia coli P12b]
gi|387610725|ref|YP_006113841.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|387619993|ref|YP_006127620.1| DNA polymerase IV [Escherichia coli DH1]
gi|388476342|ref|YP_488526.1| DNA polymerase IV [Escherichia coli str. K-12 substr. W3110]
gi|404373579|ref|ZP_10978822.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|407467706|ref|YP_006785852.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483577|ref|YP_006780726.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484117|ref|YP_006771663.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414574461|ref|ZP_11431672.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|415777326|ref|ZP_11488578.1| DNA polymerase IV [Escherichia coli 3431]
gi|416262047|ref|ZP_11640622.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|417126868|ref|ZP_11974422.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|417135509|ref|ZP_11980294.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|417246600|ref|ZP_12039701.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|417274019|ref|ZP_12061363.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|417279671|ref|ZP_12066977.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|417293063|ref|ZP_12080343.1| DNA polymerase IV [Escherichia coli B41]
gi|417611291|ref|ZP_12261766.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|417616602|ref|ZP_12267038.1| DNA polymerase IV [Escherichia coli G58-1]
gi|417803595|ref|ZP_12450633.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|417836883|ref|ZP_12483129.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|417867906|ref|ZP_12512939.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|417946822|ref|ZP_12590031.1| DNA polymerase IV [Escherichia coli XH140A]
gi|417978142|ref|ZP_12618915.1| DNA polymerase IV [Escherichia coli XH001]
gi|418042361|ref|ZP_12680560.1| DNA polymerase IV [Escherichia coli W26]
gi|418261973|ref|ZP_12883684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|418959675|ref|ZP_13511572.1| DNA polymerase IV [Escherichia coli J53]
gi|419140734|ref|ZP_13685491.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|419152086|ref|ZP_13696674.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|419157543|ref|ZP_13702072.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|419162541|ref|ZP_13707021.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|419173609|ref|ZP_13717467.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|419368536|ref|ZP_13909667.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|419389670|ref|ZP_13930511.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|419394844|ref|ZP_13935629.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|419400199|ref|ZP_13940933.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|419405371|ref|ZP_13946075.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|419410862|ref|ZP_13951536.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|419806627|ref|ZP_14331726.1| DNA polymerase IV [Escherichia coli AI27]
gi|419811151|ref|ZP_14336028.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|419927843|ref|ZP_14445567.1| DNA polymerase IV [Escherichia coli 541-1]
gi|419942197|ref|ZP_14458821.1| DNA polymerase IV [Escherichia coli 75]
gi|420356882|ref|ZP_14857902.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|420361856|ref|ZP_14862784.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|420378556|ref|ZP_14878058.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|421776172|ref|ZP_16212778.1| DNA polymerase IV [Escherichia coli AD30]
gi|422764577|ref|ZP_16818325.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|422769504|ref|ZP_16823195.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|422776897|ref|ZP_16830550.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|422784882|ref|ZP_16837621.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|422791043|ref|ZP_16843746.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|422816251|ref|ZP_16864466.1| DNA polymerase IV [Escherichia coli M919]
gi|422990955|ref|ZP_16981726.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|422992894|ref|ZP_16983658.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|422998103|ref|ZP_16988859.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|423006588|ref|ZP_16997331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|423008209|ref|ZP_16998947.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|423022396|ref|ZP_17013099.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|423027550|ref|ZP_17018243.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|423033387|ref|ZP_17024071.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|423036253|ref|ZP_17026927.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041373|ref|ZP_17032040.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048059|ref|ZP_17038716.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423051643|ref|ZP_17040451.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058608|ref|ZP_17047404.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423701027|ref|ZP_17675486.1| DNA polymerase IV [Escherichia coli H730]
gi|425118330|ref|ZP_18520070.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|425270942|ref|ZP_18662457.1| DNA polymerase IV [Escherichia coli TW15901]
gi|425281616|ref|ZP_18672737.1| DNA polymerase IV [Escherichia coli TW00353]
gi|425286835|ref|ZP_18677773.1| DNA polymerase IV [Escherichia coli 3006]
gi|429722453|ref|ZP_19257351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774532|ref|ZP_19306535.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429779795|ref|ZP_19311748.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783847|ref|ZP_19315760.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429789185|ref|ZP_19321060.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429795415|ref|ZP_19327241.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429801341|ref|ZP_19333119.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429804973|ref|ZP_19336720.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429809784|ref|ZP_19341486.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429815544|ref|ZP_19347203.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429821132|ref|ZP_19352745.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429906805|ref|ZP_19372774.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911001|ref|ZP_19376957.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916840|ref|ZP_19382780.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921878|ref|ZP_19387799.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927696|ref|ZP_19393602.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931628|ref|ZP_19397523.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933230|ref|ZP_19399120.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938884|ref|ZP_19404758.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946527|ref|ZP_19412382.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949176|ref|ZP_19415024.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957442|ref|ZP_19423271.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|432368234|ref|ZP_19611340.1| DNA polymerase IV [Escherichia coli KTE10]
gi|432415204|ref|ZP_19657838.1| DNA polymerase IV [Escherichia coli KTE44]
gi|432483893|ref|ZP_19725821.1| DNA polymerase IV [Escherichia coli KTE212]
gi|432529562|ref|ZP_19766618.1| DNA polymerase IV [Escherichia coli KTE233]
gi|432562169|ref|ZP_19798801.1| DNA polymerase IV [Escherichia coli KTE51]
gi|432578942|ref|ZP_19815377.1| DNA polymerase IV [Escherichia coli KTE56]
gi|432625807|ref|ZP_19861795.1| DNA polymerase IV [Escherichia coli KTE77]
gi|432635595|ref|ZP_19871484.1| DNA polymerase IV [Escherichia coli KTE81]
gi|432659507|ref|ZP_19895170.1| DNA polymerase IV [Escherichia coli KTE111]
gi|432669117|ref|ZP_19904669.1| DNA polymerase IV [Escherichia coli KTE119]
gi|432684113|ref|ZP_19919435.1| DNA polymerase IV [Escherichia coli KTE156]
gi|432690117|ref|ZP_19925367.1| DNA polymerase IV [Escherichia coli KTE161]
gi|432702820|ref|ZP_19937951.1| DNA polymerase IV [Escherichia coli KTE171]
gi|432717260|ref|ZP_19952262.1| DNA polymerase IV [Escherichia coli KTE9]
gi|432735711|ref|ZP_19970503.1| DNA polymerase IV [Escherichia coli KTE42]
gi|432763540|ref|ZP_19997993.1| DNA polymerase IV [Escherichia coli KTE48]
gi|432830266|ref|ZP_20063875.1| DNA polymerase IV [Escherichia coli KTE135]
gi|432879528|ref|ZP_20096530.1| DNA polymerase IV [Escherichia coli KTE154]
gi|432944820|ref|ZP_20141225.1| DNA polymerase IV [Escherichia coli KTE196]
gi|432953143|ref|ZP_20145698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|433041743|ref|ZP_20229279.1| DNA polymerase IV [Escherichia coli KTE117]
gi|433046297|ref|ZP_20233738.1| DNA polymerase IV [Escherichia coli KTE120]
gi|433172011|ref|ZP_20356579.1| DNA polymerase IV [Escherichia coli KTE232]
gi|442594020|ref|ZP_21011944.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442600405|ref|ZP_21018082.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450238531|ref|ZP_21898924.1| DNA polymerase IV [Escherichia coli S17]
gi|2501652|sp|Q47155.1|DPO4_ECOLI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123617967|sp|Q3Z5A4.1|DPO4_SHISS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027665|sp|B1J100.1|DPO4_ECOLC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|984587|dbj|BAA07593.1| DinP [Escherichia coli W3110]
gi|1552799|gb|AAB08651.1| DinP [Escherichia coli]
gi|1786425|gb|AAC73335.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|4902967|dbj|BAA77901.1| DNA polymerase IV [Escherichia coli str. K12 substr. W3110]
gi|73854351|gb|AAZ87058.1| damage-inducible protein P [Shigella sonnei Ss046]
gi|169756269|gb|ACA78968.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739]
gi|169887693|gb|ACB01400.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188487461|gb|EDU62564.1| DNA polymerase IV [Escherichia coli 53638]
gi|194422893|gb|EDX38888.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218350448|emb|CAU96135.1| DNA polymerase IV [Escherichia coli 55989]
gi|218359605|emb|CAQ97146.1| DNA polymerase IV [Escherichia coli IAI1]
gi|238860838|gb|ACR62836.1| DNA polymerase IV [Escherichia coli BW2952]
gi|242376061|emb|CAQ30746.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253325788|gb|ACT30390.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972246|gb|ACT37917.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|253976455|gb|ACT42125.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|260450573|gb|ACX40995.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|300317441|gb|EFJ67225.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|300453089|gb|EFK16709.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|301078042|gb|EFK92848.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|309700461|emb|CBI99755.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|310337006|gb|EFQ02144.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|315134916|dbj|BAJ42075.1| DNA polymerase IV [Escherichia coli DH1]
gi|315616806|gb|EFU97423.1| DNA polymerase IV [Escherichia coli 3431]
gi|320176695|gb|EFW51732.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|323943351|gb|EGB39504.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|323945385|gb|EGB41439.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|323963542|gb|EGB59100.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|323972412|gb|EGB67619.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|324115582|gb|EGC09521.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|331037558|gb|EGI09778.1| DNA polymerase IV [Escherichia coli H736]
gi|332341584|gb|AEE54918.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|340730476|gb|EGR59807.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|340741871|gb|EGR76014.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|341921195|gb|EGT70797.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|342361447|gb|EGU25585.1| DNA polymerase IV [Escherichia coli XH140A]
gi|344192205|gb|EGV46302.1| DNA polymerase IV [Escherichia coli XH001]
gi|345366378|gb|EGW98469.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|345382492|gb|EGX13371.1| DNA polymerase IV [Escherichia coli G58-1]
gi|354858087|gb|EHF18538.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|354859941|gb|EHF20388.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|354866637|gb|EHF27060.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|354876971|gb|EHF37331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|354879280|gb|EHF39618.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|354883867|gb|EHF44181.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|354885668|gb|EHF45960.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|354888735|gb|EHF48989.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|354901336|gb|EHF61463.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905567|gb|EHF65650.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354908074|gb|EHF68130.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354918546|gb|EHF78502.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354922234|gb|EHF82149.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|359331082|dbj|BAL37529.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MDS42]
gi|378000067|gb|EHV63141.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|378003670|gb|EHV66710.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|378014734|gb|EHV77632.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|378017007|gb|EHV79882.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|378038204|gb|EHW00721.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|378222886|gb|EHX83120.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|378244963|gb|EHY04902.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|378251696|gb|EHY11592.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|378252030|gb|EHY11924.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|378257760|gb|EHY17596.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|378261353|gb|EHY21147.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|383101636|gb|AFG39145.1| DNA polymerase IV [Escherichia coli P12b]
gi|383474725|gb|EID66705.1| DNA polymerase IV [Escherichia coli W26]
gi|384377367|gb|EIE35261.1| DNA polymerase IV [Escherichia coli J53]
gi|384470373|gb|EIE54485.1| DNA polymerase IV [Escherichia coli AI27]
gi|385156093|gb|EIF18092.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|385540238|gb|EIF87061.1| DNA polymerase IV [Escherichia coli M919]
gi|385713513|gb|EIG50445.1| DNA polymerase IV [Escherichia coli H730]
gi|386123629|gb|EIG72220.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386145118|gb|EIG91582.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|386153363|gb|EIH04652.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|386209228|gb|EII19715.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|386233494|gb|EII65475.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|386237770|gb|EII74714.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|386252635|gb|EIJ02326.1| DNA polymerase IV [Escherichia coli B41]
gi|388398494|gb|EIL59385.1| DNA polymerase IV [Escherichia coli 75]
gi|388406661|gb|EIL67057.1| DNA polymerase IV [Escherichia coli 541-1]
gi|391289580|gb|EIQ48072.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|391289700|gb|EIQ48187.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|391297130|gb|EIQ55197.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|391307028|gb|EIQ64768.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|397903383|gb|EJL19684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|404292949|gb|EJZ49726.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|406779279|gb|AFS58703.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055874|gb|AFS75925.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063741|gb|AFS84788.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408199329|gb|EKI24531.1| DNA polymerase IV [Escherichia coli TW15901]
gi|408206458|gb|EKI31260.1| DNA polymerase IV [Escherichia coli TW00353]
gi|408219187|gb|EKI43353.1| DNA polymerase IV [Escherichia coli 3006]
gi|408458911|gb|EKJ82696.1| DNA polymerase IV [Escherichia coli AD30]
gi|408573916|gb|EKK49721.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|429351348|gb|EKY88068.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429352051|gb|EKY88767.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429352809|gb|EKY89518.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429366722|gb|EKZ03323.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429367633|gb|EKZ04225.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429370128|gb|EKZ06694.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429382515|gb|EKZ18979.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429384748|gb|EKZ21202.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429385271|gb|EKZ21724.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429396964|gb|EKZ33311.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429399210|gb|EKZ35531.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429399499|gb|EKZ35819.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410254|gb|EKZ46476.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429412154|gb|EKZ48351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429419139|gb|EKZ55277.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429427698|gb|EKZ63778.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434542|gb|EKZ70566.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429435366|gb|EKZ71384.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429439924|gb|EKZ75903.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429444507|gb|EKZ80452.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429450811|gb|EKZ86703.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456301|gb|EKZ92146.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|430889126|gb|ELC11795.1| DNA polymerase IV [Escherichia coli KTE10]
gi|430944387|gb|ELC64484.1| DNA polymerase IV [Escherichia coli KTE44]
gi|431019546|gb|ELD32942.1| DNA polymerase IV [Escherichia coli KTE212]
gi|431057654|gb|ELD67077.1| DNA polymerase IV [Escherichia coli KTE233]
gi|431100334|gb|ELE05338.1| DNA polymerase IV [Escherichia coli KTE51]
gi|431109270|gb|ELE13236.1| DNA polymerase IV [Escherichia coli KTE56]
gi|431165705|gb|ELE66037.1| DNA polymerase IV [Escherichia coli KTE77]
gi|431174381|gb|ELE74427.1| DNA polymerase IV [Escherichia coli KTE81]
gi|431203978|gb|ELF02561.1| DNA polymerase IV [Escherichia coli KTE111]
gi|431214156|gb|ELF11988.1| DNA polymerase IV [Escherichia coli KTE119]
gi|431225659|gb|ELF22853.1| DNA polymerase IV [Escherichia coli KTE156]
gi|431231751|gb|ELF27435.1| DNA polymerase IV [Escherichia coli KTE161]
gi|431247804|gb|ELF42018.1| DNA polymerase IV [Escherichia coli KTE171]
gi|431266864|gb|ELF58397.1| DNA polymerase IV [Escherichia coli KTE9]
gi|431287982|gb|ELF78768.1| DNA polymerase IV [Escherichia coli KTE42]
gi|431313688|gb|ELG01657.1| DNA polymerase IV [Escherichia coli KTE48]
gi|431380028|gb|ELG64928.1| DNA polymerase IV [Escherichia coli KTE135]
gi|431414302|gb|ELG97045.1| DNA polymerase IV [Escherichia coli KTE154]
gi|431463836|gb|ELH43959.1| DNA polymerase IV [Escherichia coli KTE196]
gi|431470804|gb|ELH50698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|431560660|gb|ELI34169.1| DNA polymerase IV [Escherichia coli KTE117]
gi|431573448|gb|ELI46247.1| DNA polymerase IV [Escherichia coli KTE120]
gi|431696825|gb|ELJ61978.1| DNA polymerase IV [Escherichia coli KTE232]
gi|441606093|emb|CCP97224.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441650606|emb|CCQ03511.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|449325468|gb|EMD15372.1| DNA polymerase IV [Escherichia coli S17]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|416293780|ref|ZP_11650545.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|420323949|ref|ZP_14825736.1| DNA polymerase IV [Shigella flexneri CCH060]
gi|320186906|gb|EFW61624.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|391257297|gb|EIQ16415.1| DNA polymerase IV [Shigella flexneri CCH060]
Length = 350
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 120 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 179
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 180 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 237
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 238 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|306813279|ref|ZP_07447472.1| DNA polymerase IV [Escherichia coli NC101]
gi|432970436|ref|ZP_20159315.1| DNA polymerase IV [Escherichia coli KTE207]
gi|433081206|ref|ZP_20267682.1| DNA polymerase IV [Escherichia coli KTE133]
gi|305854042|gb|EFM54481.1| DNA polymerase IV [Escherichia coli NC101]
gi|431486207|gb|ELH65858.1| DNA polymerase IV [Escherichia coli KTE207]
gi|431606254|gb|ELI75633.1| DNA polymerase IV [Escherichia coli KTE133]
Length = 350
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 120 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 179
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 180 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 237
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 238 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|304385242|ref|ZP_07367587.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
gi|304328449|gb|EFL95670.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
Length = 377
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 7/220 (3%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 138 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 197
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 198 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 255
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
+ KS G +++ P L T V L+ + ++L++ + + K + L L S
Sbjct: 256 QRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 311
Query: 236 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 274
F++ + +R +F Y AK D F G+R
Sbjct: 312 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|293408387|ref|ZP_06652226.1| DNA polymerase IV [Escherichia coli B354]
gi|291471565|gb|EFF14048.1| DNA polymerase IV [Escherichia coli B354]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I +
Sbjct: 124 IANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMNLDIGEF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + N G+ T DL E +L +G G L+N ARGI EV+A +
Sbjct: 184 PGVGKASKKVMHNN-GIYTGQDLYDKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|326800591|ref|YP_004318410.1| DNA polymerase IV [Sphingobacterium sp. 21]
gi|326551355|gb|ADZ79740.1| DNA polymerase IV [Sphingobacterium sp. 21]
Length = 354
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 27/192 (14%)
Query: 50 DKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 108
DKL + + I E++ + E T SAG++ NK +AK+AS MNKP T + S ++
Sbjct: 114 DKLGIGSAIEIAKEIKNAIRTELHLTASAGVSTNKFVAKIASDMNKPDGLTFIGPSRIEA 173
Query: 109 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 168
+++LPI+K + GK+ N L + DL K S+D L +G G + +NI RGI
Sbjct: 174 FIEALPIQKFYGI-GKVTAKKMNSLQIYKGADLKKLSKDHLLNLFG-KVGNFYYNIVRGI 231
Query: 169 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE---------LSERLCSDL 219
VQ +F R LK++ + + + L EE +++R+ L
Sbjct: 232 DERPVQ------------TF---RELKSIGAEDTFTSDLMEEQELIMELKLIAQRVVKRL 276
Query: 220 EQNKRIAHTLTL 231
E + + TLTL
Sbjct: 277 EAKQVLGSTLTL 288
>gi|215485381|ref|YP_002327812.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312964711|ref|ZP_07778962.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|417754070|ref|ZP_12402165.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|418995265|ref|ZP_13542884.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|419000425|ref|ZP_13547987.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|419005962|ref|ZP_13553418.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|419011786|ref|ZP_13559154.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|419016730|ref|ZP_13564056.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|419022310|ref|ZP_13569558.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|419027236|ref|ZP_13574436.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|419033383|ref|ZP_13580481.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|419038018|ref|ZP_13585078.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
gi|215263453|emb|CAS07774.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312290732|gb|EFR18610.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|377850207|gb|EHU15174.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|377850763|gb|EHU15718.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|377853915|gb|EHU18805.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|377864039|gb|EHU28837.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|377866704|gb|EHU31468.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|377868792|gb|EHU33519.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|377879016|gb|EHU43589.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|377883802|gb|EHU48320.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|377885738|gb|EHU50229.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|377898262|gb|EHU62622.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
Length = 351
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568887|gb|AAL91955.1|AF483092_1 DNA polymerase DinB [Escherichia coli]
Length = 331
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 110 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 169
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 170 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 227
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 228 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 262
>gi|332527775|ref|ZP_08403814.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
gi|332112171|gb|EGJ12147.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
Length = 432
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 4/173 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R V + T +CS G+ NK+LAK+AS ++KP + V + + + LP++++
Sbjct: 154 VAQEIRNNVRRTTGLSCSIGVTPNKLLAKIASELDKPDGLSVVTAAELPTRIWPLPVRRI 213
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K G L LGV T+GDL LQE +G + G WL + A G V
Sbjct: 214 NGIGPKAGAKLA-ALGVATIGDLATRERAWLQEHFGRSYGAWLHDAAHGQDDRPVVTHSE 272
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
P S +F R L V + L + +L+ER+ +DL++ A T+ +
Sbjct: 273 PVSVSRETTF--ERDLHAVQD-RARLTAVFTDLAERVAADLQRKGYAARTIGI 322
>gi|187733383|ref|YP_001879027.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
gi|226738240|sp|B2U3S3.1|DPO4_SHIB3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187430375|gb|ACD09649.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
Length = 354
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 124 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 184 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 242 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 276
>gi|110804358|ref|YP_687878.1| DNA polymerase IV [Shigella flexneri 5 str. 8401]
gi|424836826|ref|ZP_18261463.1| DNA polymerase IV [Shigella flexneri 5a str. M90T]
gi|110613906|gb|ABF02573.1| damage-inducible protein P [Shigella flexneri 5 str. 8401]
gi|383465878|gb|EID60899.1| DNA polymerase IV [Shigella flexneri 5a str. M90T]
Length = 334
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 104 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 163
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 164 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 221
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 222 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 256
>gi|157156229|ref|YP_001461421.1| DNA polymerase IV [Escherichia coli E24377A]
gi|191165703|ref|ZP_03027542.1| DNA polymerase IV [Escherichia coli B7A]
gi|193063270|ref|ZP_03044361.1| DNA polymerase IV [Escherichia coli E22]
gi|194427631|ref|ZP_03060179.1| DNA polymerase IV [Escherichia coli B171]
gi|260842478|ref|YP_003220256.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|260853485|ref|YP_003227376.1| DNA polymerase IV [Escherichia coli O26:H11 str. 11368]
gi|260866431|ref|YP_003232833.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300823445|ref|ZP_07103575.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300921971|ref|ZP_07138117.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|301325439|ref|ZP_07218925.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|331666565|ref|ZP_08367439.1| DNA polymerase IV [Escherichia coli TA271]
gi|331675915|ref|ZP_08376632.1| DNA polymerase IV [Escherichia coli H591]
gi|415780327|ref|ZP_11490550.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|415801746|ref|ZP_11499726.1| DNA polymerase IV [Escherichia coli E128010]
gi|415814397|ref|ZP_11506017.1| DNA polymerase IV [Escherichia coli LT-68]
gi|415821217|ref|ZP_11510231.1| DNA polymerase IV [Escherichia coli OK1180]
gi|416342416|ref|ZP_11676647.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|417139526|ref|ZP_11982948.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|417173878|ref|ZP_12003674.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|417186796|ref|ZP_12011827.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|417190773|ref|ZP_12013369.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|417216634|ref|ZP_12023306.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|417252579|ref|ZP_12044338.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|417268239|ref|ZP_12055600.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|417299321|ref|ZP_12086551.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|417311526|ref|ZP_12098251.1| DNA polymerase IV [Escherichia coli PCN033]
gi|417589919|ref|ZP_12240640.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|417595109|ref|ZP_12245781.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|418945175|ref|ZP_13498083.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|419195265|ref|ZP_13738677.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|419201317|ref|ZP_13744547.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|419207244|ref|ZP_13750373.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|419213691|ref|ZP_13756723.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|419219514|ref|ZP_13762471.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|419224983|ref|ZP_13767875.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|419230880|ref|ZP_13773673.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|419236112|ref|ZP_13778864.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|419241701|ref|ZP_13784351.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|419247104|ref|ZP_13789721.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|419252871|ref|ZP_13795422.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|419258875|ref|ZP_13801336.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|419264918|ref|ZP_13807305.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|419270564|ref|ZP_13812897.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|419276359|ref|ZP_13818629.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|419281933|ref|ZP_13824156.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|419287730|ref|ZP_13829848.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|419293066|ref|ZP_13835127.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|419304792|ref|ZP_13846706.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|419309819|ref|ZP_13851696.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|419315128|ref|ZP_13856958.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|419320903|ref|ZP_13862647.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|419327148|ref|ZP_13868781.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|419332519|ref|ZP_13874085.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|419339504|ref|ZP_13880981.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|419379121|ref|ZP_13920102.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|419384373|ref|ZP_13925280.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|419868034|ref|ZP_14390337.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|419885738|ref|ZP_14406415.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|419888861|ref|ZP_14409324.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|419897859|ref|ZP_14417433.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|419901234|ref|ZP_14420604.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|419908192|ref|ZP_14426938.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|419949116|ref|ZP_14465373.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|420090813|ref|ZP_14602576.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|420097127|ref|ZP_14608432.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|420102342|ref|ZP_14613355.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|420110151|ref|ZP_14620184.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|420116243|ref|ZP_14625686.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|420122888|ref|ZP_14631791.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|420127544|ref|ZP_14636169.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|420133582|ref|ZP_14641796.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|420389587|ref|ZP_14888860.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|422835044|ref|ZP_16883102.1| DNA polymerase IV [Escherichia coli E101]
gi|422957405|ref|ZP_16969619.1| DNA polymerase IV [Escherichia coli H494]
gi|422976448|ref|ZP_16977049.1| DNA polymerase IV [Escherichia coli TA124]
gi|423709983|ref|ZP_17684333.1| DNA polymerase IV [Escherichia coli B799]
gi|424748379|ref|ZP_18176525.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|424759498|ref|ZP_18187162.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|424770422|ref|ZP_18197624.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|425377041|ref|ZP_18761460.1| DNA polymerase IV [Escherichia coli EC1865]
gi|432375351|ref|ZP_19618365.1| DNA polymerase IV [Escherichia coli KTE12]
gi|432812388|ref|ZP_20046237.1| DNA polymerase IV [Escherichia coli KTE101]
gi|432833329|ref|ZP_20066877.1| DNA polymerase IV [Escherichia coli KTE136]
gi|432872913|ref|ZP_20092611.1| DNA polymerase IV [Escherichia coli KTE147]
gi|432966383|ref|ZP_20155303.1| DNA polymerase IV [Escherichia coli KTE203]
gi|450210255|ref|ZP_21894032.1| DNA polymerase IV [Escherichia coli O08]
gi|189027662|sp|A7ZHZ2.1|DPO4_ECO24 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157078259|gb|ABV17967.1| DNA polymerase IV [Escherichia coli E24377A]
gi|190904210|gb|EDV63920.1| DNA polymerase IV [Escherichia coli B7A]
gi|192931178|gb|EDV83781.1| DNA polymerase IV [Escherichia coli E22]
gi|194414401|gb|EDX30675.1| DNA polymerase IV [Escherichia coli B171]
gi|257752134|dbj|BAI23636.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. 11368]
gi|257757625|dbj|BAI29122.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|257762787|dbj|BAI34282.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300421641|gb|EFK04952.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|300524063|gb|EFK45132.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300847737|gb|EFK75497.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|320201150|gb|EFW75733.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|323158084|gb|EFZ44183.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|323160304|gb|EFZ46257.1| DNA polymerase IV [Escherichia coli E128010]
gi|323171085|gb|EFZ56734.1| DNA polymerase IV [Escherichia coli LT-68]
gi|323178473|gb|EFZ64051.1| DNA polymerase IV [Escherichia coli OK1180]
gi|331065789|gb|EGI37673.1| DNA polymerase IV [Escherichia coli TA271]
gi|331076475|gb|EGI47752.1| DNA polymerase IV [Escherichia coli H591]
gi|338766893|gb|EGP21788.1| DNA polymerase IV [Escherichia coli PCN033]
gi|345346277|gb|EGW78613.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|345362411|gb|EGW94563.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|371593951|gb|EHN82824.1| DNA polymerase IV [Escherichia coli TA124]
gi|371598406|gb|EHN87207.1| DNA polymerase IV [Escherichia coli H494]
gi|371613370|gb|EHO01869.1| DNA polymerase IV [Escherichia coli E101]
gi|375319510|gb|EHS65649.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|378053892|gb|EHW16182.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|378057556|gb|EHW19783.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|378063638|gb|EHW25804.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|378069002|gb|EHW31097.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|378072568|gb|EHW34625.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|378082703|gb|EHW44647.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|378083002|gb|EHW44941.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|378091174|gb|EHW53007.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|378095024|gb|EHW56814.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|378103286|gb|EHW64956.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|378108255|gb|EHW69870.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|378117382|gb|EHW78897.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|378119153|gb|EHW80648.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|378121509|gb|EHW82960.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|378134548|gb|EHW95869.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|378136364|gb|EHW97658.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|378140419|gb|EHX01646.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|378147177|gb|EHX08325.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|378152921|gb|EHX14007.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|378161542|gb|EHX22518.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|378175763|gb|EHX36577.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|378175934|gb|EHX36745.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|378176918|gb|EHX37719.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|378190970|gb|EHX51546.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|378192154|gb|EHX52720.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|378234266|gb|EHX94344.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|378237724|gb|EHX97746.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|385704631|gb|EIG41703.1| DNA polymerase IV [Escherichia coli B799]
gi|386157254|gb|EIH13596.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|386176570|gb|EIH54049.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|386181871|gb|EIH64630.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|386191745|gb|EIH80486.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|386193496|gb|EIH87780.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|386216510|gb|EII32999.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|386230597|gb|EII57952.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|386257113|gb|EIJ12604.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|388346124|gb|EIL11866.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|388348168|gb|EIL13787.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|388354612|gb|EIL19515.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|388359096|gb|EIL23450.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|388375707|gb|EIL38709.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|388376486|gb|EIL39399.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|388419826|gb|EIL79536.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|391315132|gb|EIQ72665.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|394385113|gb|EJE62657.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|394385211|gb|EJE62752.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|394388729|gb|EJE65972.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|394404379|gb|EJE79786.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|394404527|gb|EJE79896.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|394411939|gb|EJE86120.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|394418029|gb|EJE91732.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|394425091|gb|EJE98115.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|408310459|gb|EKJ27508.1| DNA polymerase IV [Escherichia coli EC1865]
gi|421942427|gb|EKT99761.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|421944722|gb|EKU01967.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|421947192|gb|EKU04275.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|430901255|gb|ELC23223.1| DNA polymerase IV [Escherichia coli KTE12]
gi|431357280|gb|ELG43947.1| DNA polymerase IV [Escherichia coli KTE101]
gi|431388491|gb|ELG72214.1| DNA polymerase IV [Escherichia coli KTE136]
gi|431405014|gb|ELG88257.1| DNA polymerase IV [Escherichia coli KTE147]
gi|431475744|gb|ELH55548.1| DNA polymerase IV [Escherichia coli KTE203]
gi|449323141|gb|EMD13107.1| DNA polymerase IV [Escherichia coli O08]
Length = 351
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|218688123|ref|YP_002396335.1| DNA polymerase IV [Escherichia coli ED1a]
gi|218698823|ref|YP_002406452.1| DNA polymerase IV [Escherichia coli IAI39]
gi|222155074|ref|YP_002555213.1| DNA polymerase IV [Escherichia coli LF82]
gi|386622636|ref|YP_006142364.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|387615594|ref|YP_006118616.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|422831010|ref|ZP_16879161.1| DNA polymerase IV [Escherichia coli B093]
gi|433196857|ref|ZP_20380789.1| DNA polymerase IV [Escherichia coli KTE94]
gi|218368809|emb|CAR16557.1| DNA polymerase IV [Escherichia coli IAI39]
gi|218425687|emb|CAR06479.1| DNA polymerase IV [Escherichia coli ED1a]
gi|222032079|emb|CAP74818.1| DNA polymerase IV [Escherichia coli LF82]
gi|312944855|gb|ADR25682.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|349736374|gb|AEQ11080.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|371603091|gb|EHN91770.1| DNA polymerase IV [Escherichia coli B093]
gi|431726006|gb|ELJ89834.1| DNA polymerase IV [Escherichia coli KTE94]
Length = 351
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H L + +R Q+ +ET T SAGIA NK LAK+AS NKP Q +
Sbjct: 110 LDVTHNKGGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVIRP 169
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ V L LP++K+ + GK+ + +LG+ TVGDL S ++L +G G L+
Sbjct: 170 TKVLEFLQPLPVRKVPGV-GKVTQARLEQLGIHTVGDLATHSLEELAHYFG-RYGRRLYE 227
Query: 164 IARGISGEEVQ 174
+ARGI EVQ
Sbjct: 228 LARGIDEREVQ 238
>gi|420334490|ref|ZP_14836112.1| DNA polymerase IV [Shigella flexneri K-315]
gi|391268181|gb|EIQ27109.1| DNA polymerase IV [Shigella flexneri K-315]
Length = 351
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300991266|ref|ZP_07179526.1| DNA polymerase IV, partial [Escherichia coli MS 200-1]
gi|300305583|gb|EFJ60103.1| DNA polymerase IV [Escherichia coli MS 200-1]
Length = 320
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 90 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 149
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 150 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 207
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 208 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 242
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
LA + +R Q+ +ET T SAG+A NK LAK+AS NKP + S V L
Sbjct: 119 LASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVIKPSRVLDFLQP 178
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K+ +G + L+ +LG+ TVGDL + S +L++ +G G L+ +ARGI
Sbjct: 179 LPVRKVPGVGKVMQARLE-QLGIQTVGDLSRHSVAELEQRFG-RYGVRLYELARGIDERA 236
Query: 173 VQA 175
VQA
Sbjct: 237 VQA 239
>gi|19568867|gb|AAL91945.1|AF483082_1 DNA polymerase DinB [Escherichia coli]
Length = 295
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 74 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 133
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 134 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 191
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 192 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 226
>gi|424125733|ref|ZP_17858963.1| DNA polymerase IV [Escherichia coli PA9]
gi|390692917|gb|EIN67571.1| DNA polymerase IV [Escherichia coli PA9]
Length = 345
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|26246277|ref|NP_752316.1| DNA polymerase IV [Escherichia coli CFT073]
gi|227884751|ref|ZP_04002556.1| DNA polymerase IV [Escherichia coli 83972]
gi|300977370|ref|ZP_07173861.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|301045874|ref|ZP_07193061.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|331656311|ref|ZP_08357273.1| DNA polymerase IV [Escherichia coli TA206]
gi|331681650|ref|ZP_08382283.1| DNA polymerase IV [Escherichia coli H299]
gi|386627857|ref|YP_006147577.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|386632777|ref|YP_006152496.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386637671|ref|YP_006104469.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|417144149|ref|ZP_11985955.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|422362112|ref|ZP_16442686.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|422367371|ref|ZP_16447820.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|432410336|ref|ZP_19653019.1| DNA polymerase IV [Escherichia coli KTE39]
gi|432434908|ref|ZP_19677310.1| DNA polymerase IV [Escherichia coli KTE188]
gi|432455211|ref|ZP_19697415.1| DNA polymerase IV [Escherichia coli KTE201]
gi|432494133|ref|ZP_19735952.1| DNA polymerase IV [Escherichia coli KTE214]
gi|432502994|ref|ZP_19744732.1| DNA polymerase IV [Escherichia coli KTE220]
gi|432522416|ref|ZP_19759556.1| DNA polymerase IV [Escherichia coli KTE230]
gi|432567127|ref|ZP_19803654.1| DNA polymerase IV [Escherichia coli KTE53]
gi|432591390|ref|ZP_19827719.1| DNA polymerase IV [Escherichia coli KTE60]
gi|432606171|ref|ZP_19842368.1| DNA polymerase IV [Escherichia coli KTE67]
gi|432615051|ref|ZP_19851186.1| DNA polymerase IV [Escherichia coli KTE75]
gi|432649814|ref|ZP_19885577.1| DNA polymerase IV [Escherichia coli KTE87]
gi|432782195|ref|ZP_20016381.1| DNA polymerase IV [Escherichia coli KTE63]
gi|432897074|ref|ZP_20108070.1| DNA polymerase IV [Escherichia coli KTE192]
gi|432977007|ref|ZP_20165833.1| DNA polymerase IV [Escherichia coli KTE209]
gi|432998500|ref|ZP_20187041.1| DNA polymerase IV [Escherichia coli KTE223]
gi|433027326|ref|ZP_20215203.1| DNA polymerase IV [Escherichia coli KTE109]
gi|433056568|ref|ZP_20243663.1| DNA polymerase IV [Escherichia coli KTE124]
gi|433085886|ref|ZP_20272293.1| DNA polymerase IV [Escherichia coli KTE137]
gi|433123831|ref|ZP_20309427.1| DNA polymerase IV [Escherichia coli KTE160]
gi|433137901|ref|ZP_20323191.1| DNA polymerase IV [Escherichia coli KTE167]
gi|433147740|ref|ZP_20332809.1| DNA polymerase IV [Escherichia coli KTE174]
gi|433211173|ref|ZP_20394792.1| DNA polymerase IV [Escherichia coli KTE99]
gi|442605942|ref|ZP_21020751.1| DNA polymerase IV [Escherichia coli Nissle 1917]
gi|29427651|sp|P59477.1|DPO4_ECOL6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|26106675|gb|AAN78860.1|AE016756_43 DNA polymerase IV [Escherichia coli CFT073]
gi|227838352|gb|EEJ48818.1| DNA polymerase IV [Escherichia coli 83972]
gi|300302124|gb|EFJ58509.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|300409895|gb|EFJ93433.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|307552163|gb|ADN44938.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|315295163|gb|EFU54498.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|315300865|gb|EFU60087.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|331054559|gb|EGI26568.1| DNA polymerase IV [Escherichia coli TA206]
gi|331080852|gb|EGI52017.1| DNA polymerase IV [Escherichia coli H299]
gi|355418756|gb|AER82953.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|355423676|gb|AER87872.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386164032|gb|EIH25818.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|430938272|gb|ELC58513.1| DNA polymerase IV [Escherichia coli KTE39]
gi|430967292|gb|ELC84647.1| DNA polymerase IV [Escherichia coli KTE188]
gi|430985634|gb|ELD02227.1| DNA polymerase IV [Escherichia coli KTE201]
gi|431028666|gb|ELD41708.1| DNA polymerase IV [Escherichia coli KTE214]
gi|431042411|gb|ELD52900.1| DNA polymerase IV [Escherichia coli KTE220]
gi|431055130|gb|ELD64693.1| DNA polymerase IV [Escherichia coli KTE230]
gi|431102960|gb|ELE07630.1| DNA polymerase IV [Escherichia coli KTE53]
gi|431132834|gb|ELE34832.1| DNA polymerase IV [Escherichia coli KTE60]
gi|431141797|gb|ELE43560.1| DNA polymerase IV [Escherichia coli KTE67]
gi|431157991|gb|ELE58612.1| DNA polymerase IV [Escherichia coli KTE75]
gi|431193643|gb|ELE92975.1| DNA polymerase IV [Escherichia coli KTE87]
gi|431331907|gb|ELG19150.1| DNA polymerase IV [Escherichia coli KTE63]
gi|431429884|gb|ELH11718.1| DNA polymerase IV [Escherichia coli KTE192]
gi|431483035|gb|ELH62735.1| DNA polymerase IV [Escherichia coli KTE209]
gi|431514879|gb|ELH92718.1| DNA polymerase IV [Escherichia coli KTE223]
gi|431546441|gb|ELI20838.1| DNA polymerase IV [Escherichia coli KTE109]
gi|431574801|gb|ELI47560.1| DNA polymerase IV [Escherichia coli KTE124]
gi|431610462|gb|ELI79754.1| DNA polymerase IV [Escherichia coli KTE137]
gi|431650663|gb|ELJ17979.1| DNA polymerase IV [Escherichia coli KTE160]
gi|431665368|gb|ELJ32087.1| DNA polymerase IV [Escherichia coli KTE167]
gi|431677496|gb|ELJ43572.1| DNA polymerase IV [Escherichia coli KTE174]
gi|431736312|gb|ELJ99642.1| DNA polymerase IV [Escherichia coli KTE99]
gi|441712967|emb|CCQ06728.1| DNA polymerase IV [Escherichia coli Nissle 1917]
Length = 351
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|424100583|ref|ZP_17835780.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|424566835|ref|ZP_18007788.1| DNA polymerase IV [Escherichia coli EC4448]
gi|425370440|ref|ZP_18755434.1| DNA polymerase IV [Escherichia coli EC1864]
gi|390674241|gb|EIN50443.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|390916441|gb|EIP74899.1| DNA polymerase IV [Escherichia coli EC4448]
gi|408301573|gb|EKJ19162.1| DNA polymerase IV [Escherichia coli EC1864]
Length = 343
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 113 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 172
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 173 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 230
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|322831681|ref|YP_004211708.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|384256795|ref|YP_005400729.1| DNA polymerase IV [Rahnella aquatilis HX2]
gi|321166882|gb|ADW72581.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|380752771|gb|AFE57162.1| DNA polymerase IV [Rahnella aquatilis HX2]
Length = 352
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 18/247 (7%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H + LI E+R + E T SAGIA K LAK+AS +NKP Q +
Sbjct: 108 DVSHATQCNGSATLIAAEIRQAIFDEINLTASAGIAPIKFLAKIASDLNKPNGQFVITPE 167
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V L LP+ K+ +G LQ E G+ T GD+ ++ KL + +G G LW
Sbjct: 168 KVGAFLQDLPLSKIPGVGKVTAQRLQ-EQGLITCGDVQRYDLAKLLKRFG-KFGRVLWER 225
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-K 223
+GI E+ L KS G ++ + W + C L ERL +L+
Sbjct: 226 CQGIDEREISPERLRKSVGVERTL--------AEDIHSW--EECVSLIERLYPELQTRLS 275
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
R++ L + K D ++ P+ +ED + + + G GV+
Sbjct: 276 RVSPDLRIARQGVKLKFHDFQQTTQEHVWPVLN-----KEDLLKVAREAWEQRRGGRGVR 330
Query: 284 TQGSHYS 290
G H +
Sbjct: 331 LVGLHVT 337
>gi|422764774|ref|ZP_16818501.1| impB/mucB/samB family protein [Escherichia coli E1520]
gi|323938777|gb|EGB35023.1| impB/mucB/samB family protein [Escherichia coli E1520]
Length = 351
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPTEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432994080|ref|ZP_20182699.1| DNA polymerase IV [Escherichia coli KTE218]
gi|433114195|ref|ZP_20300016.1| DNA polymerase IV [Escherichia coli KTE153]
gi|431510662|gb|ELH88906.1| DNA polymerase IV [Escherichia coli KTE218]
gi|431637267|gb|ELJ05365.1| DNA polymerase IV [Escherichia coli KTE153]
Length = 351
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417688076|ref|ZP_12337325.1| DNA polymerase IV [Shigella boydii 5216-82]
gi|332094996|gb|EGJ00035.1| DNA polymerase IV [Shigella boydii 5216-82]
Length = 345
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 8/181 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I +++ ++ +E T SAG++ NK +AK+AS +NKP T + S V ++
Sbjct: 110 IGSAIDIARQIKQEIQEELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFMEH 169
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K + GK+ S +LG+ D+ +++++ L +G TG + +NI RGI
Sbjct: 170 LPIEKFFGV-GKVTASKMKKLGIYRGADMKQWTQEALTRHFG-KTGEFFYNIVRGIDNRP 227
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
VQ KS +F + +A +Q L + +ELS RL L + T+TL
Sbjct: 228 VQPNRQTKSISVEDTFA-----QDIADIQ-VLEDILKELSVRLVKRLNAKELAGKTVTLK 281
Query: 233 A 233
Sbjct: 282 V 282
>gi|82775832|ref|YP_402179.1| DNA polymerase IV [Shigella dysenteriae Sd197]
gi|309786021|ref|ZP_07680650.1| DNA polymerase IV [Shigella dysenteriae 1617]
gi|123563306|sp|Q32J17.1|DPO4_SHIDS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81239980|gb|ABB60690.1| damage-inducible protein P [Shigella dysenteriae Sd197]
gi|308926132|gb|EFP71610.1| DNA polymerase IV [Shigella dysenteriae 1617]
Length = 351
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPPKIMAFLESLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|429030285|ref|ZP_19096187.1| DNA polymerase IV [Escherichia coli 96.0939]
gi|427294596|gb|EKW57772.1| DNA polymerase IV [Escherichia coli 96.0939]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|168750214|ref|ZP_02775236.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|168757259|ref|ZP_02782266.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|168770029|ref|ZP_02795036.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|168776129|ref|ZP_02801136.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|168782992|ref|ZP_02807999.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|168789704|ref|ZP_02814711.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|168800331|ref|ZP_02825338.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|195938634|ref|ZP_03084016.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4024]
gi|208807461|ref|ZP_03249798.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208812602|ref|ZP_03253931.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208820027|ref|ZP_03260347.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209399967|ref|YP_002268858.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|254791391|ref|YP_003076228.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|261223714|ref|ZP_05937995.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK2000]
gi|261255877|ref|ZP_05948410.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK966]
gi|291281075|ref|YP_003497893.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|387505183|ref|YP_006157439.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|416318859|ref|ZP_11661411.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|416328254|ref|ZP_11668044.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|416781031|ref|ZP_11877075.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|416793031|ref|ZP_11882249.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|416803736|ref|ZP_11886849.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|416813945|ref|ZP_11891438.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97]
gi|416824639|ref|ZP_11896104.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|416835278|ref|ZP_11901383.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|419066306|ref|ZP_13612994.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|419073361|ref|ZP_13618935.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|419078503|ref|ZP_13623990.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|419084152|ref|ZP_13629569.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|419090203|ref|ZP_13635524.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|419096132|ref|ZP_13641377.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|419101821|ref|ZP_13646989.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|419113079|ref|ZP_13658114.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|419118591|ref|ZP_13663578.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|419124239|ref|ZP_13669147.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|419129827|ref|ZP_13674683.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|420267592|ref|ZP_14770000.1| DNA polymerase IV [Escherichia coli PA22]
gi|420273226|ref|ZP_14775560.1| DNA polymerase IV [Escherichia coli PA40]
gi|420278735|ref|ZP_14781002.1| DNA polymerase IV [Escherichia coli TW06591]
gi|420284829|ref|ZP_14787047.1| DNA polymerase IV [Escherichia coli TW10246]
gi|420290282|ref|ZP_14792450.1| DNA polymerase IV [Escherichia coli TW11039]
gi|420296005|ref|ZP_14798102.1| DNA polymerase IV [Escherichia coli TW09109]
gi|420301963|ref|ZP_14803996.1| DNA polymerase IV [Escherichia coli TW10119]
gi|420307650|ref|ZP_14809624.1| DNA polymerase IV [Escherichia coli EC1738]
gi|420313179|ref|ZP_14815090.1| DNA polymerase IV [Escherichia coli EC1734]
gi|421810416|ref|ZP_16246231.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|421821868|ref|ZP_16257312.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|424081296|ref|ZP_17818189.1| DNA polymerase IV [Escherichia coli FDA517]
gi|424087949|ref|ZP_17824244.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|424094183|ref|ZP_17829978.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|424113385|ref|ZP_17847571.1| DNA polymerase IV [Escherichia coli PA3]
gi|424131751|ref|ZP_17864590.1| DNA polymerase IV [Escherichia coli PA10]
gi|424184280|ref|ZP_17887664.1| DNA polymerase IV [Escherichia coli PA25]
gi|424261109|ref|ZP_17893562.1| DNA polymerase IV [Escherichia coli PA28]
gi|424459629|ref|ZP_17910618.1| DNA polymerase IV [Escherichia coli PA39]
gi|424466082|ref|ZP_17916308.1| DNA polymerase IV [Escherichia coli PA41]
gi|424478674|ref|ZP_17927947.1| DNA polymerase IV [Escherichia coli TW07945]
gi|424484695|ref|ZP_17933597.1| DNA polymerase IV [Escherichia coli TW09098]
gi|424490770|ref|ZP_17939228.1| DNA polymerase IV [Escherichia coli TW09195]
gi|424497905|ref|ZP_17945213.1| DNA polymerase IV [Escherichia coli EC4203]
gi|424504144|ref|ZP_17950957.1| DNA polymerase IV [Escherichia coli EC4196]
gi|424510386|ref|ZP_17956671.1| DNA polymerase IV [Escherichia coli TW14313]
gi|424517970|ref|ZP_17962432.1| DNA polymerase IV [Escherichia coli TW14301]
gi|424541876|ref|ZP_17984738.1| DNA polymerase IV [Escherichia coli EC4402]
gi|424548197|ref|ZP_17990440.1| DNA polymerase IV [Escherichia coli EC4439]
gi|424554478|ref|ZP_17996233.1| DNA polymerase IV [Escherichia coli EC4436]
gi|424560819|ref|ZP_18002134.1| DNA polymerase IV [Escherichia coli EC4437]
gi|424573032|ref|ZP_18013489.1| DNA polymerase IV [Escherichia coli EC1845]
gi|424579006|ref|ZP_18018968.1| DNA polymerase IV [Escherichia coli EC1863]
gi|425101766|ref|ZP_18504439.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|425129462|ref|ZP_18530590.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|425135804|ref|ZP_18536556.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|425148018|ref|ZP_18547942.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|425153634|ref|ZP_18553209.1| DNA polymerase IV [Escherichia coli PA34]
gi|425177683|ref|ZP_18575765.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|425190635|ref|ZP_18587789.1| DNA polymerase IV [Escherichia coli NE1487]
gi|425196965|ref|ZP_18593641.1| DNA polymerase IV [Escherichia coli NE037]
gi|425203633|ref|ZP_18599788.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|425240540|ref|ZP_18634204.1| DNA polymerase IV [Escherichia coli MA6]
gi|425246629|ref|ZP_18639859.1| DNA polymerase IV [Escherichia coli 5905]
gi|425252425|ref|ZP_18645332.1| DNA polymerase IV [Escherichia coli CB7326]
gi|425258760|ref|ZP_18651153.1| DNA polymerase IV [Escherichia coli EC96038]
gi|425264871|ref|ZP_18656815.1| DNA polymerase IV [Escherichia coli 5412]
gi|425292256|ref|ZP_18682877.1| DNA polymerase IV [Escherichia coli PA38]
gi|425309039|ref|ZP_18698538.1| DNA polymerase IV [Escherichia coli EC1735]
gi|425314964|ref|ZP_18704069.1| DNA polymerase IV [Escherichia coli EC1736]
gi|425321040|ref|ZP_18709746.1| DNA polymerase IV [Escherichia coli EC1737]
gi|425327203|ref|ZP_18715460.1| DNA polymerase IV [Escherichia coli EC1846]
gi|425333388|ref|ZP_18721142.1| DNA polymerase IV [Escherichia coli EC1847]
gi|425339806|ref|ZP_18727076.1| DNA polymerase IV [Escherichia coli EC1848]
gi|425345687|ref|ZP_18732522.1| DNA polymerase IV [Escherichia coli EC1849]
gi|425351906|ref|ZP_18738314.1| DNA polymerase IV [Escherichia coli EC1850]
gi|425357891|ref|ZP_18743889.1| DNA polymerase IV [Escherichia coli EC1856]
gi|425364006|ref|ZP_18749590.1| DNA polymerase IV [Escherichia coli EC1862]
gi|425383234|ref|ZP_18767139.1| DNA polymerase IV [Escherichia coli EC1866]
gi|425389935|ref|ZP_18773418.1| DNA polymerase IV [Escherichia coli EC1868]
gi|425396053|ref|ZP_18779124.1| DNA polymerase IV [Escherichia coli EC1869]
gi|425402036|ref|ZP_18784665.1| DNA polymerase IV [Escherichia coli EC1870]
gi|428944644|ref|ZP_19017317.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|428963029|ref|ZP_19034235.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|428969083|ref|ZP_19039744.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|428999510|ref|ZP_19068046.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|429036460|ref|ZP_19101923.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|429053602|ref|ZP_19118113.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|429064690|ref|ZP_19128580.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|429071309|ref|ZP_19134672.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|444922499|ref|ZP_21242239.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444928781|ref|ZP_21247948.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444934174|ref|ZP_21253133.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444939759|ref|ZP_21258422.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444945335|ref|ZP_21263769.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444950870|ref|ZP_21269109.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444967403|ref|ZP_21284886.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444972907|ref|ZP_21290206.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444978424|ref|ZP_21295427.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444988975|ref|ZP_21305722.1| DNA polymerase IV [Escherichia coli PA19]
gi|444994301|ref|ZP_21310907.1| DNA polymerase IV [Escherichia coli PA13]
gi|444999826|ref|ZP_21316295.1| DNA polymerase IV [Escherichia coli PA2]
gi|445005267|ref|ZP_21321618.1| DNA polymerase IV [Escherichia coli PA47]
gi|445010457|ref|ZP_21326659.1| DNA polymerase IV [Escherichia coli PA48]
gi|445016218|ref|ZP_21332275.1| DNA polymerase IV [Escherichia coli PA8]
gi|445021692|ref|ZP_21337621.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|445032409|ref|ZP_21348042.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|445038106|ref|ZP_21353584.1| DNA polymerase IV [Escherichia coli PA35]
gi|445043278|ref|ZP_21358622.1| DNA polymerase IV [Escherichia coli 3.4880]
gi|452971414|ref|ZP_21969641.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4009]
gi|187768454|gb|EDU32298.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|188015590|gb|EDU53712.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|188999602|gb|EDU68588.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|189355747|gb|EDU74166.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|189361061|gb|EDU79480.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|189370777|gb|EDU89193.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|189377361|gb|EDU95777.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|208727262|gb|EDZ76863.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208733879|gb|EDZ82566.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208740150|gb|EDZ87832.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209161367|gb|ACI38800.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|209745364|gb|ACI70989.1| damage-inducible protein DinP [Escherichia coli]
gi|209745368|gb|ACI70991.1| damage-inducible protein DinP [Escherichia coli]
gi|209745370|gb|ACI70992.1| damage-inducible protein DinP [Escherichia coli]
gi|209745372|gb|ACI70993.1| damage-inducible protein DinP [Escherichia coli]
gi|254590791|gb|ACT70152.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|290760948|gb|ADD54909.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|320190215|gb|EFW64865.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|320638166|gb|EFX07915.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|320643248|gb|EFX12447.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|320648895|gb|EFX17513.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|320654675|gb|EFX22676.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660243|gb|EFX27753.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|320665009|gb|EFX32119.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|326342451|gb|EGD66231.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|374357177|gb|AEZ38884.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|377921136|gb|EHU85143.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|377932632|gb|EHU96481.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|377934635|gb|EHU98462.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|377940705|gb|EHV04453.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|377950794|gb|EHV14417.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|377951760|gb|EHV15374.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|377955900|gb|EHV19453.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|377965870|gb|EHV29283.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|377973921|gb|EHV37251.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|377982138|gb|EHV45391.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|377983088|gb|EHV46335.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|390651325|gb|EIN29627.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|390653842|gb|EIN31944.1| DNA polymerase IV [Escherichia coli FDA517]
gi|390675300|gb|EIN51453.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|390689438|gb|EIN64390.1| DNA polymerase IV [Escherichia coli PA3]
gi|390709080|gb|EIN82213.1| DNA polymerase IV [Escherichia coli PA10]
gi|390720703|gb|EIN93411.1| DNA polymerase IV [Escherichia coli PA22]
gi|390734529|gb|EIO06046.1| DNA polymerase IV [Escherichia coli PA25]
gi|390737811|gb|EIO09068.1| DNA polymerase IV [Escherichia coli PA28]
gi|390762811|gb|EIO32066.1| DNA polymerase IV [Escherichia coli PA40]
gi|390777003|gb|EIO44879.1| DNA polymerase IV [Escherichia coli PA41]
gi|390785709|gb|EIO53251.1| DNA polymerase IV [Escherichia coli TW06591]
gi|390786878|gb|EIO54379.1| DNA polymerase IV [Escherichia coli PA39]
gi|390794948|gb|EIO62233.1| DNA polymerase IV [Escherichia coli TW10246]
gi|390802420|gb|EIO69457.1| DNA polymerase IV [Escherichia coli TW11039]
gi|390810887|gb|EIO77615.1| DNA polymerase IV [Escherichia coli TW07945]
gi|390811777|gb|EIO78462.1| DNA polymerase IV [Escherichia coli TW09109]
gi|390819763|gb|EIO86092.1| DNA polymerase IV [Escherichia coli TW10119]
gi|390824204|gb|EIO90207.1| DNA polymerase IV [Escherichia coli TW09098]
gi|390837680|gb|EIP02049.1| DNA polymerase IV [Escherichia coli EC4203]
gi|390840820|gb|EIP04819.1| DNA polymerase IV [Escherichia coli EC4196]
gi|390844539|gb|EIP08267.1| DNA polymerase IV [Escherichia coli TW09195]
gi|390856286|gb|EIP18904.1| DNA polymerase IV [Escherichia coli TW14301]
gi|390861790|gb|EIP24020.1| DNA polymerase IV [Escherichia coli TW14313]
gi|390886893|gb|EIP46938.1| DNA polymerase IV [Escherichia coli EC4402]
gi|390888618|gb|EIP48453.1| DNA polymerase IV [Escherichia coli EC4439]
gi|390895823|gb|EIP55251.1| DNA polymerase IV [Escherichia coli EC4436]
gi|390903876|gb|EIP62892.1| DNA polymerase IV [Escherichia coli EC1738]
gi|390911796|gb|EIP70485.1| DNA polymerase IV [Escherichia coli EC4437]
gi|390912249|gb|EIP70913.1| DNA polymerase IV [Escherichia coli EC1734]
gi|390925373|gb|EIP83075.1| DNA polymerase IV [Escherichia coli EC1863]
gi|390926499|gb|EIP84073.1| DNA polymerase IV [Escherichia coli EC1845]
gi|408077148|gb|EKH11361.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|408086778|gb|EKH20281.1| DNA polymerase IV [Escherichia coli PA34]
gi|408110766|gb|EKH42546.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|408122641|gb|EKH53466.1| DNA polymerase IV [Escherichia coli NE1487]
gi|408130775|gb|EKH60868.1| DNA polymerase IV [Escherichia coli NE037]
gi|408132747|gb|EKH62691.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|408173384|gb|EKI00408.1| DNA polymerase IV [Escherichia coli MA6]
gi|408175304|gb|EKI02236.1| DNA polymerase IV [Escherichia coli 5905]
gi|408187695|gb|EKI13623.1| DNA polymerase IV [Escherichia coli CB7326]
gi|408193072|gb|EKI18626.1| DNA polymerase IV [Escherichia coli 5412]
gi|408193438|gb|EKI18974.1| DNA polymerase IV [Escherichia coli EC96038]
gi|408233796|gb|EKI56870.1| DNA polymerase IV [Escherichia coli PA38]
gi|408240406|gb|EKI63097.1| DNA polymerase IV [Escherichia coli EC1735]
gi|408249932|gb|EKI71840.1| DNA polymerase IV [Escherichia coli EC1736]
gi|408254161|gb|EKI75706.1| DNA polymerase IV [Escherichia coli EC1737]
gi|408260604|gb|EKI81707.1| DNA polymerase IV [Escherichia coli EC1846]
gi|408269132|gb|EKI89419.1| DNA polymerase IV [Escherichia coli EC1847]
gi|408270855|gb|EKI91012.1| DNA polymerase IV [Escherichia coli EC1848]
gi|408279493|gb|EKI99099.1| DNA polymerase IV [Escherichia coli EC1849]
gi|408285961|gb|EKJ04932.1| DNA polymerase IV [Escherichia coli EC1850]
gi|408288793|gb|EKJ07595.1| DNA polymerase IV [Escherichia coli EC1856]
gi|408301411|gb|EKJ19032.1| DNA polymerase IV [Escherichia coli EC1862]
gi|408319081|gb|EKJ35252.1| DNA polymerase IV [Escherichia coli EC1868]
gi|408319154|gb|EKJ35314.1| DNA polymerase IV [Escherichia coli EC1866]
gi|408332099|gb|EKJ47189.1| DNA polymerase IV [Escherichia coli EC1869]
gi|408339326|gb|EKJ53933.1| DNA polymerase IV [Escherichia coli EC1870]
gi|408559634|gb|EKK35946.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|408591388|gb|EKK65821.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|408592913|gb|EKK67267.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|408606135|gb|EKK79602.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|408613102|gb|EKK86431.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|427218324|gb|EKV87335.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|427235148|gb|EKW02790.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|427236794|gb|EKW04351.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|427271555|gb|EKW36347.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|427307312|gb|EKW69784.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|427322322|gb|EKW83957.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|427335050|gb|EKW96099.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|427337139|gb|EKW98067.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|444543247|gb|ELV22541.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444551408|gb|ELV29354.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444552473|gb|ELV30284.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444565710|gb|ELV42563.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444568003|gb|ELV44711.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444572460|gb|ELV48886.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444586723|gb|ELV62211.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444600565|gb|ELV75399.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444609608|gb|ELV84065.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444615865|gb|ELV90053.1| DNA polymerase IV [Escherichia coli PA13]
gi|444615968|gb|ELV90150.1| DNA polymerase IV [Escherichia coli PA19]
gi|444624303|gb|ELV98203.1| DNA polymerase IV [Escherichia coli PA2]
gi|444633494|gb|ELW07018.1| DNA polymerase IV [Escherichia coli PA48]
gi|444633639|gb|ELW07145.1| DNA polymerase IV [Escherichia coli PA47]
gi|444638363|gb|ELW11702.1| DNA polymerase IV [Escherichia coli PA8]
gi|444648478|gb|ELW21407.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|444654681|gb|ELW27329.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|444663608|gb|ELW35825.1| DNA polymerase IV [Escherichia coli PA35]
gi|444668209|gb|ELW40232.1| DNA polymerase IV [Escherichia coli 3.4880]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|312796318|ref|YP_004029240.1| DNA polymerase IV [Burkholderia rhizoxinica HKI 454]
gi|312168093|emb|CBW75096.1| DNA polymerase IV (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
Length = 388
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 12/189 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ ++ V T TCS +A NK+LAK+ S ++KP T + + + + LP++++
Sbjct: 142 LAMRIKQAVRDATGLTCSICVAPNKLLAKIGSELDKPDGMTILSIADLPTRIWPLPVRRV 201
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K G L + LG+ TVGDL K LQE +G + WL ++A GI VQ
Sbjct: 202 NGIGPKAGEKLVS-LGIATVGDLAKADPGLLQEHFGHSYAAWLADVAHGIDERPVQVTSE 260
Query: 179 PKSHGSGKSFPGPRALKTVASVQH---WLNQLCEELSERLCSDLEQNKRIAHT--LTLHA 233
PKS +F + V+H L+ + +L R+ DL + + T L L
Sbjct: 261 PKSMSRETTF------ERDMHVRHDRASLSAIFTDLCVRVAQDLTRKGYVGRTVGLKLRY 314
Query: 234 SAFKSSDSD 242
+ F++ D
Sbjct: 315 ADFRTVTRD 323
>gi|209917444|ref|YP_002291528.1| DNA polymerase IV [Escherichia coli SE11]
gi|209910703|dbj|BAG75777.1| DNA polymerase IV [Escherichia coli SE11]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|415942136|ref|ZP_11555864.1| DNA-directed DNA polymerase [Herbaspirillum frisingense GSF30]
gi|407758923|gb|EKF68687.1| DNA-directed DNA polymerase [Herbaspirillum frisingense GSF30]
Length = 350
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 4/164 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
IV + V + T+ TCS GIA NK+LAKL S + KP T V + + +P+ K+
Sbjct: 111 IVAMFKRSVFEATQLTCSVGIAPNKLLAKLCSDIQKPDGFTIVTMEDIPDRIWPMPVSKI 170
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L + L + T+G+L ED L E++G + G WL+ ++ GI V
Sbjct: 171 NGIGPKSAKKL-DALAIRTIGELAACREDWLVENFGRSYGAWLYRVSHGIDDRPVVTESE 229
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
P S +F R L V ++ L + L E++ +DL++
Sbjct: 230 PVSMSRETTF--ERDLDAVRD-RNELGAIFTRLCEQVAADLDRK 270
>gi|422874487|ref|ZP_16920972.1| DNA polymerase IV [Clostridium perfringens F262]
gi|380304560|gb|EIA16848.1| DNA polymerase IV [Clostridium perfringens F262]
Length = 359
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 6/180 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS GK ++ + + L+++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIKEMIEILDKIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|157159715|ref|YP_001457033.1| DNA polymerase IV [Escherichia coli HS]
gi|193068712|ref|ZP_03049673.1| DNA polymerase IV [Escherichia coli E110019]
gi|293413508|ref|ZP_06656157.1| DNA polymerase IV [Escherichia coli B185]
gi|293418349|ref|ZP_06660784.1| DNA polymerase IV [Escherichia coli B088]
gi|300817250|ref|ZP_07097468.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|300919512|ref|ZP_07136010.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|307313500|ref|ZP_07593121.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|309797859|ref|ZP_07692241.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|331651165|ref|ZP_08352190.1| DNA polymerase IV [Escherichia coli M718]
gi|378714319|ref|YP_005279212.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|386607643|ref|YP_006123129.1| DNA polymerase IV [Escherichia coli W]
gi|386702925|ref|YP_006166762.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|386708073|ref|YP_006171794.1| DNA polymerase IV [Escherichia coli W]
gi|415832818|ref|ZP_11518094.1| DNA polymerase IV [Escherichia coli OK1357]
gi|415879827|ref|ZP_11544933.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|417152597|ref|ZP_11991388.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|417223813|ref|ZP_12027104.1| DNA polymerase IV [Escherichia coli 96.154]
gi|417229975|ref|ZP_12031561.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|417579476|ref|ZP_12230299.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|417600528|ref|ZP_12251113.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|417665320|ref|ZP_12314888.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|419343913|ref|ZP_13885297.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|419348344|ref|ZP_13889697.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|419353246|ref|ZP_13894532.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|419358592|ref|ZP_13899823.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|419363726|ref|ZP_13904908.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|422352008|ref|ZP_16432809.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|432479586|ref|ZP_19721551.1| DNA polymerase IV [Escherichia coli KTE210]
gi|432532438|ref|ZP_19769444.1| DNA polymerase IV [Escherichia coli KTE234]
gi|432677848|ref|ZP_19913277.1| DNA polymerase IV [Escherichia coli KTE142]
gi|432804333|ref|ZP_20038279.1| DNA polymerase IV [Escherichia coli KTE91]
gi|432932589|ref|ZP_20132443.1| DNA polymerase IV [Escherichia coli KTE184]
gi|433090597|ref|ZP_20276906.1| DNA polymerase IV [Escherichia coli KTE138]
gi|433192067|ref|ZP_20376097.1| DNA polymerase IV [Escherichia coli KTE90]
gi|450185316|ref|ZP_21889033.1| DNA polymerase IV [Escherichia coli SEPT362]
gi|189027663|sp|A7ZWJ6.1|DPO4_ECOHS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157065395|gb|ABV04650.1| DNA polymerase IV [Escherichia coli HS]
gi|192958075|gb|EDV88517.1| DNA polymerase IV [Escherichia coli E110019]
gi|291324877|gb|EFE64292.1| DNA polymerase IV [Escherichia coli B088]
gi|291433566|gb|EFF06539.1| DNA polymerase IV [Escherichia coli B185]
gi|300413406|gb|EFJ96716.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|300530226|gb|EFK51288.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|306906668|gb|EFN37179.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|308118543|gb|EFO55805.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|315059560|gb|ADT73887.1| DNA polymerase IV [Escherichia coli W]
gi|323181566|gb|EFZ66986.1| DNA polymerase IV [Escherichia coli OK1357]
gi|323379880|gb|ADX52148.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|324019872|gb|EGB89091.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|331050906|gb|EGI22958.1| DNA polymerase IV [Escherichia coli M718]
gi|342926640|gb|EGU95362.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|345344343|gb|EGW76716.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|345353873|gb|EGW86100.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|378190412|gb|EHX50996.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|378204006|gb|EHX64422.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|378208157|gb|EHX68541.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|378209163|gb|EHX69537.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|378219746|gb|EHX80013.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|383394452|gb|AFH19410.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|383403765|gb|AFH10008.1| DNA polymerase IV [Escherichia coli W]
gi|386169321|gb|EIH35829.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|386198861|gb|EIH97852.1| DNA polymerase IV [Escherichia coli 96.154]
gi|386206465|gb|EII10971.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|397787111|gb|EJK97941.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|431010603|gb|ELD24947.1| DNA polymerase IV [Escherichia coli KTE210]
gi|431064614|gb|ELD73479.1| DNA polymerase IV [Escherichia coli KTE234]
gi|431207759|gb|ELF06005.1| DNA polymerase IV [Escherichia coli KTE142]
gi|431357666|gb|ELG44332.1| DNA polymerase IV [Escherichia coli KTE91]
gi|431456622|gb|ELH36965.1| DNA polymerase IV [Escherichia coli KTE184]
gi|431615609|gb|ELI84735.1| DNA polymerase IV [Escherichia coli KTE138]
gi|431722666|gb|ELJ86631.1| DNA polymerase IV [Escherichia coli KTE90]
gi|449325289|gb|EMD15201.1| DNA polymerase IV [Escherichia coli SEPT362]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|415843600|ref|ZP_11523476.1| DNA polymerase IV [Shigella sonnei 53G]
gi|425113565|ref|ZP_18515409.1| DNA polymerase IV [Escherichia coli 8.0566]
gi|323169562|gb|EFZ55234.1| DNA polymerase IV [Shigella sonnei 53G]
gi|408573520|gb|EKK49356.1| DNA polymerase IV [Escherichia coli 8.0566]
Length = 312
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 82 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 141
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 142 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 199
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 200 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|19568895|gb|AAL91959.1|AF483096_1 DNA polymerase DinB [Escherichia coli]
gi|19568897|gb|AAL91960.1|AF483097_1 DNA polymerase DinB [Escherichia coli]
gi|19568899|gb|AAL91961.1|AF483098_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|419862901|ref|ZP_14385473.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
gi|388343966|gb|EIL09864.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ ++T T SAGI+ NK +AK+AS NKP Q TV V+ ++ L +KK
Sbjct: 125 LIAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEAFIEVLDVKK 184
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ T DL + + L++ +G N+G +N++RGIS +V+
Sbjct: 185 FYGI-GKVTAEKMYQLGIYTGLDLKNKTLEYLEQHFG-NSGQAFYNLSRGISYSQVKPNR 242
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++F L + ++ L + E+ R +++ K T+TL K
Sbjct: 243 QMKSIGAERTF--NENLSSEIYMEERLENIASEIERR----IKKYKISGKTITL-----K 291
Query: 238 SSDSDSRKKFPSKSCP 253
SD ++ SK+ P
Sbjct: 292 IKYSDFTQQTRSKTLP 307
>gi|416286267|ref|ZP_11648245.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|420345344|ref|ZP_14846777.1| DNA polymerase IV [Shigella boydii 965-58]
gi|320178933|gb|EFW53895.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|391276627|gb|EIQ35396.1| DNA polymerase IV [Shigella boydii 965-58]
Length = 350
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 120 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 179
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 180 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 237
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 238 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
E+R ++L ET T SAG+++NK LAKLAS + KP Q +P ++ LP+K+ +
Sbjct: 129 EIRARILAETGLTASAGVSYNKFLAKLASDVRKPNGQFVIPPQRGAEFIEGLPVKQFHGV 188
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G + N LG+ T DL S + LQ+ +G +G W + IARG V+ KS
Sbjct: 189 GPVTAEKM-NALGIQTGADLRAQSLEFLQQHFG-RSGAWYYAIARGEDDRPVEPNRPRKS 246
Query: 182 HGSGKSFPGPRAL 194
GS +F R L
Sbjct: 247 SGSETTFSEDRLL 259
>gi|419923466|ref|ZP_14441411.1| DNA polymerase IV [Escherichia coli 541-15]
gi|388393729|gb|EIL55084.1| DNA polymerase IV [Escherichia coli 541-15]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGMRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L SLP+ ++
Sbjct: 124 IARTIRTQIREETRLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLSLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|168261272|ref|ZP_02683245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|205350046|gb|EDZ36677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQRCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|19568891|gb|AAL91957.1|AF483094_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L L I
Sbjct: 124 IANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMHLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ T DL E +L +G G L+N ARGI EV+A +
Sbjct: 184 PGV-GKASKKVMHDNGIFTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + +++V ++ SL I
Sbjct: 124 IAQYIRRDILEQTALTASAGVSYNKFLAKLASGMNKPNGMTVIDYNNVHDIIMSLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ + T DL + SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNDIYTGQDLYQKSEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRI 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSIGTERTF 251
>gi|417621489|ref|ZP_12271819.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|419373694|ref|ZP_13914754.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
gi|345386937|gb|EGX16769.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|378227113|gb|EHX87289.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
Length = 312
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 82 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 141
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 142 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 199
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 200 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|219112721|ref|XP_002178112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410997|gb|EEC50926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 13/253 (5%)
Query: 47 DH-RDKLLACGVLIVTELRMQVLKETE-FTCSAGIAHNKMLAKLASGMNKPAQQTTVP-- 102
DH R + G ++ ++R +V + T TCSAG+A N +L+K+AS NKP Q VP
Sbjct: 199 DHERISAVLAGSQVLQDMRSRVTEVTGGLTCSAGLAPNFLLSKIASDRNKPNGQCLVPSD 258
Query: 103 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 162
S+ G L LP +K+ + G++ + + G+ TV DL + ++ + + +L
Sbjct: 259 HESIIGFLHPLPTRKVSGI-GRVTAKILSSFGIATVADLYR-ERSLVRFLFQEASAEFLL 316
Query: 163 NIARGISG-EEVQARLLPKSHGSGKSFPGPRALKTVASVQHW--LNQLCEELSERLCSDL 219
+ G SG +E A + G G+ G +T A+ + W +N EE++E L SD+
Sbjct: 317 RASIGCSGSDERNADDVETDDGPGQK--GISRERTFAAKESWTAINLKLEEIAELLSSDM 374
Query: 220 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGS 279
+ AHT+T+ +S D SR + + ++ A ++ +L + EF GS
Sbjct: 375 KHKNIFAHTVTVKVK-LRSFDCLSRSRSLGRGVFIQ-AAADLRPIALDLLRELKDEFSGS 432
Query: 280 FGVKTQGSHYSGW 292
F V+ G S +
Sbjct: 433 FAVRLLGIRCSSF 445
>gi|386617769|ref|YP_006137349.1| DNA polymerase IV [Escherichia coli NA114]
gi|387828289|ref|YP_003348226.1| DNA polymerase IV [Escherichia coli SE15]
gi|432396106|ref|ZP_19638898.1| DNA polymerase IV [Escherichia coli KTE25]
gi|432420390|ref|ZP_19662948.1| DNA polymerase IV [Escherichia coli KTE178]
gi|432498522|ref|ZP_19740302.1| DNA polymerase IV [Escherichia coli KTE216]
gi|432557297|ref|ZP_19793990.1| DNA polymerase IV [Escherichia coli KTE49]
gi|432693062|ref|ZP_19928277.1| DNA polymerase IV [Escherichia coli KTE162]
gi|432709111|ref|ZP_19944180.1| DNA polymerase IV [Escherichia coli KTE6]
gi|432721852|ref|ZP_19956780.1| DNA polymerase IV [Escherichia coli KTE17]
gi|432726347|ref|ZP_19961230.1| DNA polymerase IV [Escherichia coli KTE18]
gi|432740031|ref|ZP_19974753.1| DNA polymerase IV [Escherichia coli KTE23]
gi|432917226|ref|ZP_20121880.1| DNA polymerase IV [Escherichia coli KTE173]
gi|432924504|ref|ZP_20126791.1| DNA polymerase IV [Escherichia coli KTE175]
gi|432979781|ref|ZP_20168562.1| DNA polymerase IV [Escherichia coli KTE211]
gi|432989343|ref|ZP_20178013.1| DNA polymerase IV [Escherichia coli KTE217]
gi|433095136|ref|ZP_20281354.1| DNA polymerase IV [Escherichia coli KTE139]
gi|433104413|ref|ZP_20290436.1| DNA polymerase IV [Escherichia coli KTE148]
gi|433109432|ref|ZP_20295314.1| DNA polymerase IV [Escherichia coli KTE150]
gi|281177446|dbj|BAI53776.1| DNA polymerase IV [Escherichia coli SE15]
gi|333968270|gb|AEG35075.1| DNA polymerase IV [Escherichia coli NA114]
gi|430918488|gb|ELC39489.1| DNA polymerase IV [Escherichia coli KTE25]
gi|430947555|gb|ELC67252.1| DNA polymerase IV [Escherichia coli KTE178]
gi|431032116|gb|ELD44827.1| DNA polymerase IV [Escherichia coli KTE216]
gi|431094350|gb|ELD99981.1| DNA polymerase IV [Escherichia coli KTE49]
gi|431237204|gb|ELF32204.1| DNA polymerase IV [Escherichia coli KTE162]
gi|431252832|gb|ELF46346.1| DNA polymerase IV [Escherichia coli KTE6]
gi|431268597|gb|ELF60066.1| DNA polymerase IV [Escherichia coli KTE17]
gi|431276455|gb|ELF67475.1| DNA polymerase IV [Escherichia coli KTE18]
gi|431286160|gb|ELF76986.1| DNA polymerase IV [Escherichia coli KTE23]
gi|431447878|gb|ELH28598.1| DNA polymerase IV [Escherichia coli KTE173]
gi|431450145|gb|ELH30637.1| DNA polymerase IV [Escherichia coli KTE175]
gi|431496402|gb|ELH75985.1| DNA polymerase IV [Escherichia coli KTE211]
gi|431498588|gb|ELH77773.1| DNA polymerase IV [Escherichia coli KTE217]
gi|431620014|gb|ELI88902.1| DNA polymerase IV [Escherichia coli KTE139]
gi|431632438|gb|ELJ00726.1| DNA polymerase IV [Escherichia coli KTE150]
gi|431634437|gb|ELJ02678.1| DNA polymerase IV [Escherichia coli KTE148]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|427439515|ref|ZP_18924170.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
gi|425788351|dbj|GAC44958.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
Length = 377
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 7/220 (3%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 138 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 197
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 198 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 255
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
+ KS G +++ P L T V L + ++L++ + + K + L L S
Sbjct: 256 QRERKSIGKEETYGKP--LVTENEVDQRLRLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 311
Query: 236 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 274
F++ + +R +F Y AK D F G+R
Sbjct: 312 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R Q+ + T T SAGIA NK LAK+AS NKP Q + + V+ L L + ++ +
Sbjct: 125 IRAQIFETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKPAQVEAFLTPLKVGRIPGV- 183
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
GK+ ELGV TVGDL +F+ D+LQ +G G L+ ARGI VQ
Sbjct: 184 GKVAERKLAELGVATVGDLRRFTLDELQLRFG-RFGAALYRRARGIDERPVQ 234
>gi|50547727|ref|XP_501333.1| YALI0C01573p [Yarrowia lipolytica]
gi|49647200|emb|CAG81630.1| YALI0C01573p [Yarrowia lipolytica CLIB122]
Length = 640
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 132/289 (45%), Gaps = 40/289 (13%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D +L G I +R QV +E ++TCSAGIA + +AKLAS NKP QT V ++
Sbjct: 221 DWDDLVLMFGARISKRMREQVYEELKYTCSAGIARCRSVAKLASAQNKPNNQTVVRAGAL 280
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW------ 160
L + + +GGKLG + +LG L K S+D + + +
Sbjct: 281 NNYLKKKSLTDIGGMGGKLGEEVLEKLG------LDKESKDNITQVQALSKQQLQQKLQN 334
Query: 161 ------LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 214
++N+ARG ++ R+ KS S K+F LK + WL EL+ R
Sbjct: 335 ASLTEKVFNLARGNLYRGLKTRIELKSMLSAKNF-ARVPLKDRKEAELWLVVFAGELAMR 393
Query: 215 LCSDLEQNK-----RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 269
+ +E K R T++L + FK SR+ + PL + T K++E+ LF
Sbjct: 394 I---VEHEKELGTCRRPRTVSLQHARFKPMVKRSRQ----QDLPLVH-TNKLKEE---LF 442
Query: 270 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
AG++ + + + I+ LS+S + V + +G SI +F
Sbjct: 443 AAGVK----LLKLIENEPEHDAYPISMLSLSVTGFVELPAG-ASIGHFF 486
>gi|41057942|gb|AAR98928.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|301019119|ref|ZP_07183323.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331661627|ref|ZP_08362550.1| DNA polymerase IV [Escherichia coli TA143]
gi|419917055|ref|ZP_14435335.1| DNA polymerase IV [Escherichia coli KD2]
gi|422330511|ref|ZP_16411528.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|432390183|ref|ZP_19633048.1| DNA polymerase IV [Escherichia coli KTE21]
gi|432769059|ref|ZP_20003434.1| DNA polymerase IV [Escherichia coli KTE50]
gi|432791514|ref|ZP_20025608.1| DNA polymerase IV [Escherichia coli KTE78]
gi|432797481|ref|ZP_20031509.1| DNA polymerase IV [Escherichia coli KTE79]
gi|432959552|ref|ZP_20149930.1| DNA polymerase IV [Escherichia coli KTE202]
gi|433061471|ref|ZP_20248440.1| DNA polymerase IV [Escherichia coli KTE125]
gi|300399378|gb|EFJ82916.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331060049|gb|EGI32013.1| DNA polymerase IV [Escherichia coli TA143]
gi|373248531|gb|EHP67959.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|388394924|gb|EIL56165.1| DNA polymerase IV [Escherichia coli KD2]
gi|430922926|gb|ELC43664.1| DNA polymerase IV [Escherichia coli KTE21]
gi|431319354|gb|ELG07025.1| DNA polymerase IV [Escherichia coli KTE50]
gi|431342310|gb|ELG29289.1| DNA polymerase IV [Escherichia coli KTE78]
gi|431345701|gb|ELG32615.1| DNA polymerase IV [Escherichia coli KTE79]
gi|431479984|gb|ELH59715.1| DNA polymerase IV [Escherichia coli KTE202]
gi|431588521|gb|ELI59795.1| DNA polymerase IV [Escherichia coli KTE125]
Length = 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432541635|ref|ZP_19778496.1| DNA polymerase IV [Escherichia coli KTE236]
gi|432546975|ref|ZP_19783773.1| DNA polymerase IV [Escherichia coli KTE237]
gi|432620356|ref|ZP_19856404.1| DNA polymerase IV [Escherichia coli KTE76]
gi|432813757|ref|ZP_20047568.1| DNA polymerase IV [Escherichia coli KTE115]
gi|431078152|gb|ELD85210.1| DNA polymerase IV [Escherichia coli KTE236]
gi|431085457|gb|ELD91562.1| DNA polymerase IV [Escherichia coli KTE237]
gi|431163277|gb|ELE63711.1| DNA polymerase IV [Escherichia coli KTE76]
gi|431368776|gb|ELG55007.1| DNA polymerase IV [Escherichia coli KTE115]
Length = 351
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057936|gb|AAR98925.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 103 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPVFLQTLPLAK 162
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 163 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 220
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|295673426|ref|XP_002797259.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282631|gb|EEH38197.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1160
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +LR V ++T S GI N + A++A KPA Q + +V+ + L +K +
Sbjct: 502 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDL 561
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++
Sbjct: 562 PGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVP 620
Query: 179 PKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 225
KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 621 RKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 665
>gi|168209362|ref|ZP_02634987.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
gi|170712467|gb|EDT24649.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
Length = 359
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVALTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|241663231|ref|YP_002981591.1| DNA polymerase IV [Ralstonia pickettii 12D]
gi|240865258|gb|ACS62919.1| DNA-directed DNA polymerase [Ralstonia pickettii 12D]
Length = 357
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L A G I ++R +V +E T SAG+A NK +AK+AS NKP V + G +
Sbjct: 115 LAASGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVA 174
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
LP+ ++ + GK+ + LG T GDL + D+LQ+ +G G L ++ RGI
Sbjct: 175 ELPVDRLFGV-GKVTAAKLRRLGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHR 232
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L+ L E+L+ R+
Sbjct: 233 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELSVLVEQLAARV 274
>gi|425141743|ref|ZP_18542062.1| DNA polymerase IV [Escherichia coli 10.0869]
gi|408605090|gb|EKK78624.1| DNA polymerase IV [Escherichia coli 10.0869]
Length = 312
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 82 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 141
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 142 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 199
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 200 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|419699174|ref|ZP_14226796.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|422378507|ref|ZP_16458714.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|432731001|ref|ZP_19965840.1| DNA polymerase IV [Escherichia coli KTE45]
gi|432758061|ref|ZP_19992584.1| DNA polymerase IV [Escherichia coli KTE46]
gi|324010201|gb|EGB79420.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|380349696|gb|EIA37962.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|431278405|gb|ELF69395.1| DNA polymerase IV [Escherichia coli KTE45]
gi|431311847|gb|ELF99994.1| DNA polymerase IV [Escherichia coli KTE46]
Length = 351
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERAVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|225377127|ref|ZP_03754348.1| hypothetical protein ROSEINA2194_02773 [Roseburia inulinivorans DSM
16841]
gi|225211032|gb|EEG93386.1| hypothetical protein ROSEINA2194_02773 [Roseburia inulinivorans DSM
16841]
Length = 405
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 3/175 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
CD +KL + T+L+ ++ KE FT + GI+ NK+LAK+AS KP + T+
Sbjct: 123 CDMTGTEKLYGDPIAFATKLKDRIYKELGFTVNIGISTNKLLAKMASDFEKPNRVHTLFP 182
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ LP++ + G L++ LG+TT+G L K L ++ + G +LW
Sbjct: 183 EEMATKFWPLPVESLYGCGKTTAKRLRS-LGITTIGALAKADRQMLLSNFK-SQGDYLWE 240
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
A GIS V A P + G G S P + + H L LCE + R+ D
Sbjct: 241 SANGISSSAVTAE-SPANKGYGNSVTLPYDVTDTENAHHILLSLCETVGARIRYD 294
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L+ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 LSSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEEAMGVLAS 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +++GV T DLL E L +++G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKTVERL-HDMGVYTGQDLLDVPEMVLIDTFG-RFGFDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G +++ + L V L LC +R+ + LE+N++ T+ L
Sbjct: 247 VKVDRVRKSIGKERTY--RKLLYREEDVLKELTSLC----QRVAASLERNEKKGRTIVL 299
>gi|419874079|ref|ZP_14396035.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str. CVM9534]
gi|388351588|gb|EIL16800.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str. CVM9534]
Length = 293
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 63 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 122
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 123 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 180
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 181 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 215
>gi|300902538|ref|ZP_07120515.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|301302018|ref|ZP_07208151.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|415865924|ref|ZP_11538633.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|417168586|ref|ZP_12001037.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|417637524|ref|ZP_12287701.1| DNA polymerase IV [Escherichia coli TX1999]
gi|419168270|ref|ZP_13712668.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|419179263|ref|ZP_13722888.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|419186030|ref|ZP_13729551.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|419190061|ref|ZP_13733529.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|420383905|ref|ZP_14883294.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|427803303|ref|ZP_18970370.1| damage-inducible protein P [Escherichia coli chi7122]
gi|427807907|ref|ZP_18974972.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|432452995|ref|ZP_19695240.1| DNA polymerase IV [Escherichia coli KTE193]
gi|433031645|ref|ZP_20219465.1| DNA polymerase IV [Escherichia coli KTE112]
gi|433128532|ref|ZP_20314017.1| DNA polymerase IV [Escherichia coli KTE163]
gi|433133434|ref|ZP_20318817.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443616243|ref|YP_007380099.1| DNA polymerase IV [Escherichia coli APEC O78]
gi|300405351|gb|EFJ88889.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|300842570|gb|EFK70330.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|315253713|gb|EFU33681.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|345395654|gb|EGX25396.1| DNA polymerase IV [Escherichia coli TX1999]
gi|378018676|gb|EHV81522.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|378027724|gb|EHV90349.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|378031454|gb|EHV94042.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|378042164|gb|EHW04613.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|386170634|gb|EIH42687.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|391309729|gb|EIQ67394.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|412961485|emb|CCK45390.1| damage-inducible protein P [Escherichia coli chi7122]
gi|412968086|emb|CCJ42699.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|430974983|gb|ELC91888.1| DNA polymerase IV [Escherichia coli KTE193]
gi|431560897|gb|ELI34402.1| DNA polymerase IV [Escherichia coli KTE112]
gi|431652088|gb|ELJ19251.1| DNA polymerase IV [Escherichia coli KTE163]
gi|431663249|gb|ELJ30011.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443420751|gb|AGC85655.1| DNA polymerase IV [Escherichia coli APEC O78]
Length = 351
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|383759505|ref|YP_005438490.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
gi|381380174|dbj|BAL96991.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
Length = 432
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 5/179 (2%)
Query: 54 ACGVLIVT-ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
A GV V E+R V + T CS G+ NK+LAK+AS ++KP + V + + +
Sbjct: 148 AGGVRAVAQEIRNNVRRTTGLVCSIGVTPNKLLAKIASELDKPDGLSVVTAAELPTRIWP 207
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++++ +G K G L LGV T+GDL LQE +G + G WL A G
Sbjct: 208 LPVRRINGIGPKAGARLA-ALGVATIGDLAMRERAWLQEHFGRSYGAWLHEAAHGQDDRP 266
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P S +F R L V + L + L+ER+ +DL++ A T+ +
Sbjct: 267 VVTHSEPVSVSRETTF--ERDLHAVQD-RAQLTAVFTHLAERVAADLQRKGYAARTIGI 322
>gi|255555247|ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
gi|223542041|gb|EEF43585.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
Length = 1200
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 9/242 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ + +R ++ + T T SAGIA N +L++LA+ KP Q + V L+ L IK
Sbjct: 483 VLASTIRKEIFETTGCTASAGIARNMLLSRLATRTAKPDGQCYIRPEKVDEYLNELSIKT 542
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L+ + V T G L S+D L + +G TG LWN +RGI V
Sbjct: 543 LPGIGHVLEEKLKKK-NVRTCGQLRLISKDSLHKDFGKKTGEMLWNYSRGIDNRLVGVIQ 601
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++ G R + + QH+L LC+E+S R L+ T TL +
Sbjct: 602 ESKSIGAEVNW-GVR-FRNLQDSQHFLLNLCKEVSLR----LQGCGVHGRTFTLKIKKRR 655
Query: 238 SSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 295
+ K C L + T + D ++ Q ++ GSF + + G +++
Sbjct: 656 KDAGEPTKYMGCGDCENLSHSMTVPVATDDVDVLQRIAKQLFGSFNLDVKEIRGVGLQVS 715
Query: 296 AL 297
L
Sbjct: 716 KL 717
>gi|19568885|gb|AAL91954.1|AF483091_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D +LA V I E+R ++ +ET T SAG+++NK+LAKLAS KP VP
Sbjct: 126 DGVLA--VRIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHGLAF 183
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G L + +G+ TV DL S + L +G G W + +ARGI
Sbjct: 184 LAPLPVGKLHGVGPATVKKL-SAMGIHTVLDLRNASREVLIAQFG-KAGLWFYEVARGID 241
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ KS G ++F P+ L+ + L Q+ ++S RL
Sbjct: 242 SRPVQTSRQRKSVGYERTF--PQNLEDPKVMLSTLRQMAGQVSARL 285
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L+ I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L
Sbjct: 115 LSTATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTP 174
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP+ K+ +G + L LG+ TVGDL E +L+ +G + G L+ ARGI
Sbjct: 175 LPVSKVHGVGKVMQAKL-AALGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDPRP 232
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+A +S S +F AL +A L+E+ + + +RIA T+ L
Sbjct: 233 VEANQQVQSISSEDTFAEDLALDALAPA-------IRLLAEKTWTATRRTERIARTVVL 284
>gi|338215016|ref|YP_004646508.1| DNA polymerase IV [Runella slithyformis DSM 19594]
gi|336309135|gb|AEI52232.1| DNA polymerase IV [Runella slithyformis DSM 19594]
Length = 355
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + LI E++ ++++ T+ T SAG+++NK LAKLAS KP +
Sbjct: 107 LDVTENLKKMRSATLIAQEIKQRIVETTQLTASAGVSYNKFLAKLASDFRKPNGIYVIGP 166
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ + +L + K + GK+ N+LG+ T DL +E L+ +G G++ +N
Sbjct: 167 DEGEAFVANLTVNKFHGI-GKVTAEKMNQLGIQTGMDLKSKTEFFLRTHFG-KMGSYYYN 224
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
IARGI V+A + KS GS +F R L+T+A ++ L L E++
Sbjct: 225 IARGIDQRPVEADRIRKSVGSENTF--DRDLETLAEMEGGLLPLIEDV 270
>gi|226292210|gb|EEH47630.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb18]
Length = 1161
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +LR V ++T S GI N + A++A KPA Q + +V+ + L +K +
Sbjct: 503 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDL 562
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++
Sbjct: 563 PGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVP 621
Query: 179 PKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 225
KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 622 RKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|418825347|ref|ZP_13380648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392815769|gb|EJA71702.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
Length = 339
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 94 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 150
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 151 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 208
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 209 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 258
Query: 220 EQNKRIA 226
E+ I
Sbjct: 259 ERRLAIV 265
>gi|238787934|ref|ZP_04631730.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
gi|238723882|gb|EEQ15526.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
Length = 352
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQSIAAELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLPFLHDLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G + LQ ELG+ T D+ FS+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTASKLQ-ELGLLTCSDVQHFSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L E+L ++LE R
Sbjct: 237 DRLRKSVGVERTL--------AEDIHDWSS--CESLIEQLYTELETRLR 275
>gi|417516172|ref|ZP_12179116.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353654837|gb|EHC96017.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 343
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 98 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 154
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 155 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 212
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 213 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 262
Query: 220 EQNKRIA 226
E+ I
Sbjct: 263 ERRLAIV 269
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R Q+ +ET T SAG+A NK LAK+AS NKP V + V L+ LP++K+ +
Sbjct: 128 IRHQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPAKVLAFLEPLPVRKVPGV- 186
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
GK+ + +LG+ TVGDL S +L+ +G G L+ +ARGI EVQ
Sbjct: 187 GKVTQARLEQLGIHTVGDLATHSAQELEHYFG-RYGRRLYELARGIDEREVQ 237
>gi|56414559|ref|YP_151634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197363489|ref|YP_002143126.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|81599398|sp|Q5PF76.1|DPO4_SALPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|56128816|gb|AAV78322.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197094966|emb|CAR60503.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 351
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++L++T T SAGI+ NK +AK+AS NKP Q TV V L++L IKK
Sbjct: 125 LIAEEIRAKILEKTGLTASAGISINKFIAKVASDYNKPNGQKTVIPGEVLDFLENLDIKK 184
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ LG+ T DL +E L +++G +G + I RGI V
Sbjct: 185 FYGV-GKVTQKKMYALGIYTGADLKTKTEAYLTQNFG-KSGAHYFRIVRGIHNSPV---- 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
K H + KS R + + ++ +ELS+ L L ++K T+TL
Sbjct: 239 --KPHRTRKSIGAERTFNENLASEIYMEARLKELSDELERRLLKSKVAGKTITL 290
>gi|388258303|ref|ZP_10135479.1| DNA-directed DNA polymerase [Cellvibrio sp. BR]
gi|387937815|gb|EIK44370.1| DNA-directed DNA polymerase [Cellvibrio sp. BR]
Length = 355
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ +E T SAGIA NK LAK+AS NKP Q + + V + LP+KK+
Sbjct: 122 IAQEIRARIQREIGITVSAGIAPNKFLAKIASDWNKPNGQFVITPAQVDSFVAQLPVKKI 181
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + L EL + T DL K S +L + +G G+ L+ ++RGI E+
Sbjct: 182 FGVGKAMASKLA-ELSIFTCADLQKLSVFELSQRFG-QMGSRLYKLSRGIDERELTVDRR 239
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS +F + L+ + H L L ++L+ RL
Sbjct: 240 RKSLSVENTF--AKDLQNLPQCLHELPALSQQLAIRL 274
>gi|225681089|gb|EEH19373.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb03]
Length = 1161
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +LR V ++T S GI N + A++A KPA Q + +V+ + L +K +
Sbjct: 503 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDL 562
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++
Sbjct: 563 PGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVP 621
Query: 179 PKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 225
KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 622 RKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|19568913|gb|AAL91968.1|AF483105_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L + P+ K
Sbjct: 115 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTFPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|332281409|ref|ZP_08393822.1| DNA polymerase IV [Shigella sp. D9]
gi|417627167|ref|ZP_12277415.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|432748683|ref|ZP_19983307.1| DNA polymerase IV [Escherichia coli KTE29]
gi|332103761|gb|EGJ07107.1| DNA polymerase IV [Shigella sp. D9]
gi|345378609|gb|EGX10537.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|431300789|gb|ELF90337.1| DNA polymerase IV [Escherichia coli KTE29]
Length = 351
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|198245459|ref|YP_002214268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200390906|ref|ZP_03217517.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|207855798|ref|YP_002242449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|375117745|ref|ZP_09762912.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|418845907|ref|ZP_13400684.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418860672|ref|ZP_13415247.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418864156|ref|ZP_13418691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|421357900|ref|ZP_15808208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421365109|ref|ZP_15815331.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421369118|ref|ZP_15819302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421372564|ref|ZP_15822713.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421376176|ref|ZP_15826285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421380746|ref|ZP_15830808.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384111|ref|ZP_15834140.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421392611|ref|ZP_15842568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395871|ref|ZP_15845803.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421398530|ref|ZP_15848435.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421405287|ref|ZP_15855122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421407887|ref|ZP_15857694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421414038|ref|ZP_15863784.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421419576|ref|ZP_15869268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421423747|ref|ZP_15873398.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421425500|ref|ZP_15875135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421429849|ref|ZP_15879443.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421437785|ref|ZP_15887299.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421440875|ref|ZP_15890350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445723|ref|ZP_15895144.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421451323|ref|ZP_15900689.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436635994|ref|ZP_20515843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436793964|ref|ZP_20521938.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436810464|ref|ZP_20529502.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436813788|ref|ZP_20531976.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831512|ref|ZP_20536180.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436849648|ref|ZP_20540785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436856061|ref|ZP_20545166.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436863047|ref|ZP_20549590.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436871522|ref|ZP_20554696.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436878673|ref|ZP_20559092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886788|ref|ZP_20563194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436894544|ref|ZP_20568022.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436904671|ref|ZP_20574688.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909852|ref|ZP_20576437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436918105|ref|ZP_20581276.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436925673|ref|ZP_20586105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436934146|ref|ZP_20590150.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436941426|ref|ZP_20594986.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436949416|ref|ZP_20599430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436959531|ref|ZP_20603728.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436975250|ref|ZP_20611526.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436987057|ref|ZP_20615701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436999594|ref|ZP_20620167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437009914|ref|ZP_20623894.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437018290|ref|ZP_20626782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437035425|ref|ZP_20633351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046726|ref|ZP_20638542.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437049477|ref|ZP_20640097.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437056709|ref|ZP_20644077.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437065161|ref|ZP_20648846.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437079059|ref|ZP_20656553.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437082082|ref|ZP_20658157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437090106|ref|ZP_20662678.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437115035|ref|ZP_20669257.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437122676|ref|ZP_20672518.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437132779|ref|ZP_20678229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437137886|ref|ZP_20680681.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437149199|ref|ZP_20688072.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151842|ref|ZP_20689513.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437160794|ref|ZP_20694867.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169509|ref|ZP_20699829.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437176703|ref|ZP_20703507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437188110|ref|ZP_20710114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437198466|ref|ZP_20711392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437259572|ref|ZP_20717092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437272583|ref|ZP_20724333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437276752|ref|ZP_20726566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437288221|ref|ZP_20730555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437309658|ref|ZP_20735586.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437329016|ref|ZP_20741106.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437338654|ref|ZP_20743859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437381049|ref|ZP_20750293.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437413030|ref|ZP_20753452.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437456141|ref|ZP_20760260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437470138|ref|ZP_20765153.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437485143|ref|ZP_20769255.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437499181|ref|ZP_20773990.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437513661|ref|ZP_20777639.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437531189|ref|ZP_20780669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554615|ref|ZP_20784387.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437571560|ref|ZP_20788669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437586130|ref|ZP_20793217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437602499|ref|ZP_20798506.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437625841|ref|ZP_20805694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437643106|ref|ZP_20808368.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437664518|ref|ZP_20814321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437675779|ref|ZP_20816847.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437687951|ref|ZP_20819620.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437710216|ref|ZP_20826321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437726256|ref|ZP_20830061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437754980|ref|ZP_20834157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437802361|ref|ZP_20838326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437907945|ref|ZP_20850084.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438076074|ref|ZP_20857333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438090824|ref|ZP_20860653.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438105066|ref|ZP_20866132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438114592|ref|ZP_20870208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|445144062|ref|ZP_21386811.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445153608|ref|ZP_21391455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445163964|ref|ZP_21393996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445218195|ref|ZP_21402532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445219434|ref|ZP_21402735.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445298291|ref|ZP_21411325.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445329323|ref|ZP_21413381.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445343659|ref|ZP_21417128.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445362434|ref|ZP_21424194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|197939975|gb|ACH77308.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603351|gb|EDZ01897.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|206707601|emb|CAR31883.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|326622012|gb|EGE28357.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|392811909|gb|EJA67907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392826056|gb|EJA81789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392831417|gb|EJA87050.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|395980620|gb|EJH89843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395983413|gb|EJH92606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395990137|gb|EJH99269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|396000214|gb|EJI09229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396003403|gb|EJI12391.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396003795|gb|EJI12782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396008172|gb|EJI17107.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396010915|gb|EJI19826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396020673|gb|EJI29514.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396024598|gb|EJI33384.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396029819|gb|EJI38555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396030320|gb|EJI39054.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396035716|gb|EJI44388.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396035795|gb|EJI44466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396037132|gb|EJI45783.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396048747|gb|EJI57291.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396056771|gb|EJI65244.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396057166|gb|EJI65638.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396064078|gb|EJI72466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396064158|gb|EJI72545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396065814|gb|EJI74182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|434958517|gb|ELL52066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434962967|gb|ELL56109.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434964956|gb|ELL57919.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434975296|gb|ELL67606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982469|gb|ELL74292.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434988225|gb|ELL79824.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434991494|gb|ELL82982.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434997574|gb|ELL88813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000737|gb|ELL91859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435007349|gb|ELL98202.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011320|gb|ELM02040.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017193|gb|ELM07701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435018358|gb|ELM08833.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435028225|gb|ELM18304.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435030837|gb|ELM20826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435040066|gb|ELM29835.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435041286|gb|ELM31028.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045257|gb|ELM34902.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435050201|gb|ELM39706.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435054114|gb|ELM43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435054196|gb|ELM43631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435059638|gb|ELM48913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435060135|gb|ELM49405.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435066814|gb|ELM55885.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435074792|gb|ELM63615.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078196|gb|ELM66940.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435081882|gb|ELM70523.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435096227|gb|ELM84499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435097015|gb|ELM85277.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435099809|gb|ELM88000.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435101415|gb|ELM89569.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111250|gb|ELM99155.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435115124|gb|ELN02914.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435115281|gb|ELN03052.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435122326|gb|ELN09848.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435123502|gb|ELN10995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435131008|gb|ELN18236.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435134520|gb|ELN21648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435143315|gb|ELN30181.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146307|gb|ELN33100.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435148368|gb|ELN35095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435155428|gb|ELN41972.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435156030|gb|ELN42532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435164960|gb|ELN51020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435167915|gb|ELN53768.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435173593|gb|ELN59090.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435183621|gb|ELN68582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435185148|gb|ELN70036.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435190547|gb|ELN75129.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435196045|gb|ELN80401.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435203065|gb|ELN86851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435203148|gb|ELN86932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435206848|gb|ELN90340.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435215023|gb|ELN97771.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435216318|gb|ELN98793.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435222316|gb|ELO04432.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435224104|gb|ELO06088.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435230298|gb|ELO11632.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435243491|gb|ELO23748.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435243913|gb|ELO24167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435248013|gb|ELO27934.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435252608|gb|ELO32136.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435260187|gb|ELO39400.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435260401|gb|ELO39600.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435265646|gb|ELO44451.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435275141|gb|ELO53228.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435277393|gb|ELO55346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435282999|gb|ELO60595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435288989|gb|ELO65979.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435292206|gb|ELO68995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435303719|gb|ELO79558.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435310147|gb|ELO84686.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435310911|gb|ELO85232.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435316161|gb|ELO89352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435318755|gb|ELO91664.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435321675|gb|ELO94066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435328991|gb|ELP00449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444847202|gb|ELX72352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444852267|gb|ELX77348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444856698|gb|ELX81724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444867633|gb|ELX92311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444870975|gb|ELX95430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444879083|gb|ELY03191.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444881463|gb|ELY05507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444882093|gb|ELY06085.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|444884113|gb|ELY07957.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
Length = 351
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|398832290|ref|ZP_10590451.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. YR522]
gi|398223387|gb|EJN09731.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. YR522]
Length = 391
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 11/242 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I L+ V + T+ TCS GIA NK+LAKL S M KP T V + + + ++K+
Sbjct: 144 IARRLKSAVFEATQLTCSVGIAPNKLLAKLCSDMQKPDGITIVTMDDLPSRIWPMDVRKI 203
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L+ LG+ ++G+L +ED L E +G + G WL ++ G+ V
Sbjct: 204 NGIGPKSTARLEG-LGIRSIGELAACAEDWLLEHFGQSYGRWLHRVSHGLDERPVVTHSE 262
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAF 236
P S +F R L V Q L ++ L +++ +DLE+ + + L F
Sbjct: 263 PVSMSRETTF--ERDLHAVRDRQQ-LGEVFTRLCQQVAADLERKGYVCRKIGIKLRFDDF 319
Query: 237 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA 296
++ D FP+ PL TA L + L + GVK G G A
Sbjct: 320 ETVTRDV--TFPT---PLGDATAIRHAAGTCLKRIELSRSIRLLGVKASGLQRPGADAAA 374
Query: 297 LS 298
+S
Sbjct: 375 VS 376
>gi|194442660|ref|YP_002039555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|238913297|ref|ZP_04657134.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|418807468|ref|ZP_13363026.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418812007|ref|ZP_13367531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418815365|ref|ZP_13370866.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418821453|ref|ZP_13376878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418831645|ref|ZP_13386595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418835646|ref|ZP_13390537.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418838629|ref|ZP_13393471.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418848833|ref|ZP_13403568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854945|ref|ZP_13409608.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|194401323|gb|ACF61545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|392776747|gb|EJA33433.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392778731|gb|EJA35402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392791048|gb|EJA47541.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392791817|gb|EJA48285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392798542|gb|EJA54813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392802921|gb|EJA59122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392814455|gb|EJA70406.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392822180|gb|EJA77992.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823119|gb|EJA78922.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
Length = 351
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|417503427|ref|ZP_12173976.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353652129|gb|EHC94042.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 304
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|168465387|ref|ZP_02699269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|418763352|ref|ZP_13319476.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418766861|ref|ZP_13322933.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418772033|ref|ZP_13328039.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418774716|ref|ZP_13330677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418781329|ref|ZP_13337214.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418784793|ref|ZP_13340630.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418804608|ref|ZP_13360212.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|419789054|ref|ZP_14314737.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419794108|ref|ZP_14319724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|195631947|gb|EDX50467.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|392616198|gb|EIW98633.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392616520|gb|EIW98953.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392733608|gb|EIZ90810.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392734596|gb|EIZ91778.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392736872|gb|EIZ94034.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392748056|gb|EJA05047.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392749916|gb|EJA06892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392754324|gb|EJA11243.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392769637|gb|EJA26366.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 351
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 60 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIKK 117
V E+R V KET T SAGIA NKMLAK+ S NKP Q +PF S+K + LPI++
Sbjct: 461 VQEMRAFVHKETNLTVSAGIAPNKMLAKICSDKNKPNGQFYLPFDRESIKSFMQDLPIRR 520
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLL--KFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ + G++ L + +G+ T GD+ + + + + +G +L I GI+ V+
Sbjct: 521 IPGV-GRVNERLLDAIGIKTCGDIYTHRATLSLMDKQFGLQ---FLLRIHLGIASNVVEP 576
Query: 176 --RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
R K + F R T++ Q LN+L EE++ L D E+N T+TL
Sbjct: 577 GKREERKIASAKVHF---RTFSTLSDRQQILNKL-EEVAAELEDDTERNGWTGKTVTL 630
>gi|365905357|ref|ZP_09443116.1| DNA polymerase IV [Lactobacillus versmoldensis KCTC 3814]
Length = 357
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I L+ +++KET TCS GI++NK LAK+AS KP +T + + + L +PI+K
Sbjct: 119 IANYLQQRIVKETHLTCSVGISYNKFLAKMASDYRKPFGRTLILGAYAEDFLKPIPIEKF 178
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G L +E+ + T DL +D +++G G ++ GI V+ +
Sbjct: 179 NGIGKTTQKKL-HEMNIYTGADLQNLDQDTFLDTFG-KMGYVMYRRVHGIDDSPVEGNRI 236
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G +++ R + A + H L +L + +S +DL++ ++ T+ L +
Sbjct: 237 RKSIGRERTY--DRNILYSADIHHELKKLAKMVS----NDLKKRRQHGKTVVL---KLRD 287
Query: 239 SDSDSRKK 246
SD D+ K
Sbjct: 288 SDFDTVTK 295
>gi|168819096|ref|ZP_02831096.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|409248740|ref|YP_006884580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|205343975|gb|EDZ30739.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320084568|emb|CBY94360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 351
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|422346234|ref|ZP_16427148.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
gi|373226856|gb|EHP49178.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
Length = 359
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|300691327|ref|YP_003752322.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
gi|299078387|emb|CBJ51037.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
Length = 362
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 179
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ QH L L ++L+ R+
Sbjct: 238 QVQPSQIRKSVSVEETYAT--DLRTLDDCQHELTILVDQLAARV 279
>gi|19568907|gb|AAL91965.1|AF483102_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T D+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCSDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSER 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
D K +A I E+R ++ +ET+ + SAGI+ NK +AK+AS +NKP Q T+
Sbjct: 110 AYLDVTENKKGIATATRIAKEIRQRIWEETQLSASAGISINKFVAKVASDINKPNGQKTI 169
Query: 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
V L++LPIKK +G K ++ +LG+ DL ++ L +G +GT
Sbjct: 170 MPDDVIPFLENLPIKKFYGIGEKTAEKMK-KLGIHFGRDLKQWDLPLLVREFG-KSGTHY 227
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSF 188
+NI RG+ V+ + KS G+ ++F
Sbjct: 228 YNIVRGLQKSTVKPDRIRKSIGAERTF 254
>gi|416568092|ref|ZP_11764531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363578194|gb|EHL62010.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 351
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L+ LP+ K
Sbjct: 127 IAREIRQKIYDKTGLRASAGISINKFIAKVASDINKPNGQKTIHPEEVIQFLEELPVNKF 186
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + N LG+ DL K S ++L + +G +G +NI RGI EV+ +
Sbjct: 187 YGVGKVTAAKMYN-LGIFVGNDLKKRSLEELTQLFG-KSGLHYYNIVRGIHKSEVKPNRI 244
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF-K 237
KS G+ ++F + + + LN + +E+ +R+ + K I TL + S F +
Sbjct: 245 RKSVGAERTF--RENISSEIYMLDKLNDIADEIEKRMHKSNTKGKTI--TLKIKYSDFTQ 300
Query: 238 SSDSDSRKKFPSK 250
+ S + +F SK
Sbjct: 301 QTRSKTVGQFISK 313
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL ++S L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRRWSLVDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 4/171 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H K I E+R + E + T SAGIA K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V + +LP+ K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVSEFIKTLPLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ GI EVQA KS G ++ + T+ LN L +EL RL
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--IENIHTIEQASALLNNLYDELIRRL 277
>gi|417339507|ref|ZP_12121054.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|357960280|gb|EHJ84177.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
Length = 356
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|110799334|ref|YP_696252.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
gi|123344702|sp|Q0TQ38.1|DPO4_CLOP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110673981|gb|ABG82968.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
Length = 359
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
+ KS GK ++ + + L ++ E +SE LC
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLC 278
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 145 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLQPLPVNRV 204
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 205 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 262
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+E+ + +R+ HT+ L
Sbjct: 263 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWKATRKTERVGHTVVL 308
>gi|417606183|ref|ZP_12256714.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
gi|345365850|gb|EGW97950.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
Length = 351
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKSDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417363626|ref|ZP_12136788.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417404428|ref|ZP_12157699.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353599778|gb|EHC55865.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353628510|gb|EHC76549.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 356
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++LKET T SAG+++NK +AKLAS NKP Q +P S + + LPI++
Sbjct: 126 IAMEIRAEILKETGLTASAGVSYNKFIAKLASDENKPNGQCVIPPKSGEQFVAGLPIRRF 185
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G ++ LG+ T DL K L++++G N+ + + ARG VQ +
Sbjct: 186 YGVGPVTAKKMER-LGILTGADLKKADLSWLRQNFG-NSADYYYAAARGKDDRIVQPNRI 243
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G +++ K + + L + E+L L +E+ + HT+ L
Sbjct: 244 RKSVGVERTYS-----KDLFEKEEILTE-TEKLITLLWERIERANAVGHTIVL 290
>gi|313206275|ref|YP_004045452.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321740|ref|YP_006017902.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|442314536|ref|YP_007355839.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
gi|312445591|gb|ADQ81946.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|325336283|gb|ADZ12557.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|441483459|gb|AGC40145.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
Length = 360
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+
Sbjct: 109 LDVTHNKKGIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ V L++LPI++ +G + +LG+ DL + + L +G G ++
Sbjct: 169 TKVLSFLENLPIERFYGIGNVTANKMY-QLGIYKGKDLKEKPLEYLVTHFG-KMGGHYYD 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
I RGI EV+ + KS G ++ + T + L +L +EL R +E+ K
Sbjct: 227 IVRGIHRSEVKPHRIAKSVGVEHTYVDD--IDTEQDIDKQLMRLAQELYRR----IEKKK 280
Query: 224 RIAHTLTL 231
+LTL
Sbjct: 281 VKGKSLTL 288
>gi|416110629|ref|ZP_11592173.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
gi|315023043|gb|EFT36056.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
Length = 348
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+
Sbjct: 97 LDVTHNKKGIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHP 156
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ V L++LPI++ +G + +LG+ DL + + L +G G ++
Sbjct: 157 TKVLSFLENLPIERFYGIGNVTANKMY-QLGIYKGKDLKEKPLEYLVTHFG-KMGGHYYD 214
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
I RGI EV+ + KS G ++ + T + L +L +EL R +E+ K
Sbjct: 215 IVRGIHRSEVKPHRIAKSVGVEHTYVDD--IDTEQDIDKQLMRLAQELYRR----IEKKK 268
Query: 224 RIAHTLTL 231
+LTL
Sbjct: 269 VKGKSLTL 276
>gi|62178884|ref|YP_215301.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224582154|ref|YP_002635952.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375113190|ref|ZP_09758360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75484717|sp|Q57SU1.1|DPO4_SALCH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|62126517|gb|AAX64220.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224466681|gb|ACN44511.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713336|gb|EFZ04907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 351
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|419134618|ref|ZP_13679427.1| DNA polymerase IV [Escherichia coli DEC5E]
gi|377988341|gb|EHV51519.1| DNA polymerase IV [Escherichia coli DEC5E]
Length = 351
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L + P+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTFPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|114566886|ref|YP_754040.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337821|gb|ABI68669.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 393
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 66 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 125
QV E T S GI++NK LAKLAS M+KP + S LL LP+ ++ +G K
Sbjct: 132 QVYSELGLTISVGISYNKFLAKLASDMDKPNGLRIITESEALELLRPLPVSRIWGIGQKT 191
Query: 126 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 185
SL ++LG+ T+GD+ + L++ G + G W +A GI V+ KS G
Sbjct: 192 EQSL-DKLGIKTIGDIQDSPPEWLEDKIG-SAGRLFWELAHGIDRRAVEPEHERKSLGRE 249
Query: 186 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT--LHASAFKS 238
++F P + A +L +L + + LC L Q A T+T L S FK+
Sbjct: 250 ETF--PEDINDTA----YLEKLIVQFAAELCRKLRQEALFAATITIKLRYSNFKT 298
>gi|83814230|ref|YP_445661.1| DNA polymerase IV [Salinibacter ruber DSM 13855]
gi|83755624|gb|ABC43737.1| putative DNA polymerase IV [Salinibacter ruber DSM 13855]
Length = 373
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Query: 55 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 114
G LI LR ++ +ET T SAG+ K +AK+AS ++KP T V + LP
Sbjct: 135 SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLP 194
Query: 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
I+K +G +Q ELG+ T DL + E L +G G +A G VQ
Sbjct: 195 IEKFHGIGPVTAAKMQ-ELGIQTGADLQETPERTLIHHFG-KRGRHFKTLAVGTDDRPVQ 252
Query: 175 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 234
KS G+ ++FP + +A + L++L ++ER+ L Q R T+TL
Sbjct: 253 PDRDRKSVGAERTFP-----EDIARAETMLDRLS-PIAERVAQRLRQANRKGRTVTLK-- 304
Query: 235 AFKSSDSDSRKKFPSKSCPLR 255
KS D + + PLR
Sbjct: 305 -LKSHDHQVSTRQTTVDRPLR 324
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDKGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|425420882|ref|ZP_18802115.1| DNA polymerase IV [Escherichia coli 0.1288]
gi|408348030|gb|EKJ62165.1| DNA polymerase IV [Escherichia coli 0.1288]
Length = 351
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQILPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|168213536|ref|ZP_02639161.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|168217689|ref|ZP_02643314.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
gi|170714869|gb|EDT27051.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|182380253|gb|EDT77732.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
Length = 359
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E++ ++ KE T SAG++ NK LAK+AS KP T + + K + +LPI K
Sbjct: 124 LIALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNLPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +G+ DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGIFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS GK ++ + + L+++ +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILDRIAGRISESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|320352846|ref|YP_004194185.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
gi|320121348|gb|ADW16894.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
Length = 388
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + + T T SAG+++NK LAK+ASG +KP T +P + + +LPI K
Sbjct: 125 IAQAIRAAIRETTGLTASAGVSYNKFLAKIASGYHKPDGLTVIPPDRARDFIAALPIGKF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +Q G+ T DLL+FS ++ +G TG + +IARG+ VQ +
Sbjct: 185 YGVGPATERKMQAH-GIRTGADLLRFSRQEMVALFG-KTGHFFHDIARGLDQRPVQPVRV 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ + + A V L QL +++S RL ++ R TLTL
Sbjct: 243 RKSIGAETTL--AEDILDYARVSVVLYQLVQQVS-RLLAEKATGGR---TLTL 289
>gi|156340492|ref|XP_001620463.1| hypothetical protein NEMVEDRAFT_v1g148076 [Nematostella vectensis]
gi|156205419|gb|EDO28363.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 6/179 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ E SAGI+ NK +AK+AS +NKP Q T+ V L+ LPI K
Sbjct: 47 LIAQEIRQRIWDELTLRASAGISINKFIAKIASDINKPNGQKTINPEEVVSFLEELPINK 106
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G + N G+ DL K+++++L+ ++G +G ++I RGI +V+
Sbjct: 107 FFGIGKVTAAKMHN-YGIFKGADLKKWTKEELEATFG-KSGAQYYHIVRGIHNSQVKPNR 164
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
+ KS + ++F + + + L+++ EL +R+ + + K I TL + S F
Sbjct: 165 VRKSIAAERTF--TENISSEIYMIERLDKIAVELEKRMVASNTKGKTI--TLKIKYSDF 219
>gi|291241885|ref|XP_002740840.1| PREDICTED: DNA-directed DNA polymerase eta-like [Saccoglossus
kowalevskii]
Length = 410
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 157 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
T WL ++ RGI E V+ R LPKS G GK+F G AL T V++WL QL E+ ERL
Sbjct: 2 TRAWLHDVGRGIDNEPVRPRQLPKSVGCGKNFSGKLALATRNEVKYWLLQLATEMEERLQ 61
Query: 217 SDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREF 276
+ E NKR+A ++++ + P ++ +G + DT + + +
Sbjct: 62 IESEMNKRVAKSVSVQVRWGGN---------PPQTASRSFGLHNMDADTISRNALSVIQC 112
Query: 277 LGSFGVKTQGSHYSGW--RITALSVSASKIVPVLS--GTCSIMKYFNGPDKFGST 327
T G+H W I LS+ ASK + G SI +F+G ++ ST
Sbjct: 113 FN-----TAGNHQKAWCPAIITLSMCASKFTETGNNIGKMSISSFFSGKEQSTST 162
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 15/227 (6%)
Query: 50 DKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 108
DKL + + I +++ + E T SAG++ NK +AK+AS +NKP + S ++
Sbjct: 121 DKLNIGSAIEIAKQIKQAIQDELRLTASAGVSINKFVAKIASDINKPNGLKFIGPSGIEN 180
Query: 109 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 168
++ LP++K + GK+ ++G+ T DL K +ED++ +G G + + I RG+
Sbjct: 181 FMELLPVEKFFGV-GKVTAEKMKKMGLHTGADLKKLTEDEMHRHFG-KAGRFYYQIVRGL 238
Query: 169 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 228
EVQ KS G+ +F L T+A + L+++ ++ R LE+ + T
Sbjct: 239 DNREVQPHRETKSMGAEDTF--AYDLTTLAEMNAELDKIAVTVANR----LERYQLKGRT 292
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCP---LRYGTAKIQEDTFNLFQAG 272
+TL K SD + S + P L TA ++ F F+ G
Sbjct: 293 VTLKV---KYSDFKQITRNQSSAAPIADLESITATAKQLLFTSFEEG 336
>gi|325093158|gb|EGC46468.1| DNA damage repair protein Mus42 [Ajellomyces capsulatus H88]
Length = 1162
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +LR V ++T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 499 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDL 558
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 559 PGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPP 617
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 618 RKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|306832183|ref|ZP_07465337.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|386338579|ref|YP_006034748.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|304425622|gb|EFM28740.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|334281215|dbj|BAK28789.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 381
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I ++ + KE TCSAG+++NK LAKLAS KP T + + L
Sbjct: 145 IKSAIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLKK 204
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 205 LPIEKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSP 262
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 229
V++ + KS GS +++ + + + + E+S +R+ L++N ++ T+
Sbjct: 263 VKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTI 313
Query: 230 TLHA 233
L
Sbjct: 314 VLKV 317
>gi|219116476|ref|XP_002179033.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409800|gb|EEC49731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 592
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 7/199 (3%)
Query: 41 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 100
L R D + L G + +R +V FT SAGI NK +AKL++ KP Q
Sbjct: 192 LVRNGMDVDVEALQRGAHLARCIRDEVRTLLGFTLSAGIGSNKTIAKLSAAYGKPNGQAI 251
Query: 101 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL---GVTTVGDLLKF-SEDKLQESYGFN 156
V LL I+K + LGGKLG ++Q L TTV + K+ S L++ +
Sbjct: 252 TYPQFVDTLLADTEIRKCRNLGGKLGKTVQALLPADAPTTVHSIAKYLSLPTLEQHFEAP 311
Query: 157 TGTWLWNIARGISGEEVQAR---LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
T W++ +ARG+ E V ++ L KS + KS P S+ W+ L +E+
Sbjct: 312 TAAWVYRVARGVDTEPVASKNESALTKSITAFKSLPFDVQGHDWESLASWIRLLADEIVS 371
Query: 214 RLCSDLEQNKRIAHTLTLH 232
R+ D +N R + T+
Sbjct: 372 RVERDASRNGRYPKSCTIQ 390
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L++L I
Sbjct: 124 ATLIAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPNGQKTINPEEVIPFLETLDI 183
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K + GK+ G+ T DL S + L+E +G +GT+ ++I RGI EV
Sbjct: 184 RKFYGI-GKVTAEKMYLHGIFTGNDLKSKSLEYLEEHFG-KSGTYYYHIVRGIHNSEV-- 239
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
K H + KS R + + ++ + E ++E + LE++ T+TL
Sbjct: 240 ----KPHRTRKSLGAERTFSENITSELFMMERLEHIAEEIERRLEKSNVAGKTVTL 291
>gi|427400155|ref|ZP_18891393.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
gi|425720895|gb|EKU83810.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
Length = 341
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ + T SAG+A NK +AK+AS NKP V V + +LP+KK
Sbjct: 104 LIAQEIRRRIFETVGITASAGVAPNKFVAKIASDWNKPDGLFLVRPDEVDAFVAALPVKK 163
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 173
+ + GK+ N LG+ T DL +S D+LQE +G + G L++++RGI EV
Sbjct: 164 LHGV-GKVTAEKMNRLGLQTCADLRAWSMDQLQEHFG-SFGARLYDLSRGIDHREV 217
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|15799936|ref|NP_285948.1| DNA polymerase IV [Escherichia coli O157:H7 str. EDL933]
gi|15829512|ref|NP_308285.1| DNA polymerase IV [Escherichia coli O157:H7 str. Sakai]
gi|168763472|ref|ZP_02788479.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|217324216|ref|ZP_03440300.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|387880812|ref|YP_006311114.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|416314767|ref|ZP_11658954.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|419045011|ref|ZP_13591967.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|419049925|ref|ZP_13596836.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|419059657|ref|ZP_13606456.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|419060440|ref|ZP_13607226.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|419107283|ref|ZP_13652393.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|421816484|ref|ZP_16252053.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|421828626|ref|ZP_16263957.1| DNA polymerase IV [Escherichia coli PA7]
gi|423712146|ref|ZP_17686450.1| DNA polymerase IV [Escherichia coli PA31]
gi|424075040|ref|ZP_17812418.1| DNA polymerase IV [Escherichia coli FDA505]
gi|424122327|ref|ZP_17855737.1| DNA polymerase IV [Escherichia coli PA5]
gi|424138355|ref|ZP_17870684.1| DNA polymerase IV [Escherichia coli PA14]
gi|424144804|ref|ZP_17876602.1| DNA polymerase IV [Escherichia coli PA15]
gi|424450070|ref|ZP_17901839.1| DNA polymerase IV [Escherichia coli PA32]
gi|424453353|ref|ZP_17904925.1| DNA polymerase IV [Escherichia coli PA33]
gi|424472686|ref|ZP_17922388.1| DNA polymerase IV [Escherichia coli PA42]
gi|424523797|ref|ZP_17967852.1| DNA polymerase IV [Escherichia coli EC4421]
gi|424530007|ref|ZP_17973663.1| DNA polymerase IV [Escherichia coli EC4422]
gi|425095675|ref|ZP_18498721.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|425123424|ref|ZP_18525028.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|425160107|ref|ZP_18559300.1| DNA polymerase IV [Escherichia coli FDA506]
gi|425165616|ref|ZP_18564444.1| DNA polymerase IV [Escherichia coli FDA507]
gi|425171899|ref|ZP_18570322.1| DNA polymerase IV [Escherichia coli FDA504]
gi|425183923|ref|ZP_18581573.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|425209419|ref|ZP_18605181.1| DNA polymerase IV [Escherichia coli PA4]
gi|425215468|ref|ZP_18610807.1| DNA polymerase IV [Escherichia coli PA23]
gi|425222039|ref|ZP_18616918.1| DNA polymerase IV [Escherichia coli PA49]
gi|425228286|ref|ZP_18622702.1| DNA polymerase IV [Escherichia coli PA45]
gi|425234586|ref|ZP_18628564.1| DNA polymerase IV [Escherichia coli TT12B]
gi|425408572|ref|ZP_18790754.1| DNA polymerase IV [Escherichia coli NE098]
gi|425414858|ref|ZP_18796515.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|425426008|ref|ZP_18807081.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|428950826|ref|ZP_19022984.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|428956675|ref|ZP_19028401.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|428975628|ref|ZP_19045824.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|428981341|ref|ZP_19051099.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|428987616|ref|ZP_19056929.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|428993428|ref|ZP_19062357.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|429005744|ref|ZP_19073696.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|429012110|ref|ZP_19079387.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|429018347|ref|ZP_19085150.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|429023995|ref|ZP_19090434.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|429045093|ref|ZP_19109852.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|429048246|ref|ZP_19112910.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|429059300|ref|ZP_19123467.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|429076537|ref|ZP_19139763.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429823779|ref|ZP_19355316.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429830138|ref|ZP_19361035.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444956342|ref|ZP_21274359.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444961688|ref|ZP_21279458.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|445026927|ref|ZP_21342712.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|445048918|ref|ZP_21364097.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|445054545|ref|ZP_21369503.1| DNA polymerase IV [Escherichia coli 99.0670]
gi|22095615|sp|Q8X7Q1.1|DPO4_ECO57 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|12513002|gb|AAG54556.1|AE005201_9 damage-inducible protein P; putative tRNA synthetase [Escherichia
coli O157:H7 str. EDL933]
gi|13359715|dbj|BAB33681.1| damage-inducible protein DinP [Escherichia coli O157:H7 str. Sakai]
gi|189366404|gb|EDU84820.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|209745366|gb|ACI70990.1| damage-inducible protein DinP [Escherichia coli]
gi|217320437|gb|EEC28861.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|326338762|gb|EGD62581.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|377897027|gb|EHU61415.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|377900349|gb|EHU64682.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|377902286|gb|EHU66592.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|377918852|gb|EHU82897.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|377967154|gb|EHV30560.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|386794270|gb|AFJ27304.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|390653899|gb|EIN31990.1| DNA polymerase IV [Escherichia coli FDA505]
gi|390684103|gb|EIN59733.1| DNA polymerase IV [Escherichia coli PA5]
gi|390711159|gb|EIN84143.1| DNA polymerase IV [Escherichia coli PA15]
gi|390714385|gb|EIN87294.1| DNA polymerase IV [Escherichia coli PA14]
gi|390744762|gb|EIO15604.1| DNA polymerase IV [Escherichia coli PA32]
gi|390745592|gb|EIO16385.1| DNA polymerase IV [Escherichia coli PA31]
gi|390756602|gb|EIO26105.1| DNA polymerase IV [Escherichia coli PA33]
gi|390779287|gb|EIO47006.1| DNA polymerase IV [Escherichia coli PA42]
gi|390861056|gb|EIP23337.1| DNA polymerase IV [Escherichia coli EC4421]
gi|390872231|gb|EIP33571.1| DNA polymerase IV [Escherichia coli EC4422]
gi|408072826|gb|EKH07143.1| DNA polymerase IV [Escherichia coli PA7]
gi|408090828|gb|EKH24085.1| DNA polymerase IV [Escherichia coli FDA506]
gi|408096503|gb|EKH29442.1| DNA polymerase IV [Escherichia coli FDA507]
gi|408103331|gb|EKH35702.1| DNA polymerase IV [Escherichia coli FDA504]
gi|408117126|gb|EKH48357.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|408141950|gb|EKH71370.1| DNA polymerase IV [Escherichia coli PA4]
gi|408150648|gb|EKH79212.1| DNA polymerase IV [Escherichia coli PA23]
gi|408153774|gb|EKH82149.1| DNA polymerase IV [Escherichia coli PA49]
gi|408159116|gb|EKH87218.1| DNA polymerase IV [Escherichia coli PA45]
gi|408167378|gb|EKH94890.1| DNA polymerase IV [Escherichia coli TT12B]
gi|408337814|gb|EKJ52499.1| DNA polymerase IV [Escherichia coli NE098]
gi|408350941|gb|EKJ64767.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|408353439|gb|EKJ66949.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|408560046|gb|EKK36332.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|408585788|gb|EKK60616.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|408617843|gb|EKK90946.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|427215048|gb|EKV84278.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|427218210|gb|EKV87237.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|427234897|gb|EKW02565.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|427251839|gb|EKW18366.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|427253688|gb|EKW20096.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|427254673|gb|EKW20996.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|427271306|gb|EKW36136.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|427277961|gb|EKW42463.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|427287088|gb|EKW50897.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|427293012|gb|EKW56307.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|427301119|gb|EKW64008.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|427305111|gb|EKW67718.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|427323346|gb|EKW84928.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|427335084|gb|EKW96132.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429260584|gb|EKY44141.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429262171|gb|EKY45533.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444583318|gb|ELV59045.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444586342|gb|ELV61854.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|444650657|gb|ELW23483.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|444673232|gb|ELW44885.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|444674790|gb|ELW46299.1| DNA polymerase IV [Escherichia coli 99.0670]
Length = 351
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|225563209|gb|EEH11488.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 1162
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +LR V ++T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 499 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLTVKDL 558
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 559 PGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPP 617
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 618 RKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|288906138|ref|YP_003431360.1| DNA polymerase IV [Streptococcus gallolyticus UCN34]
gi|288732864|emb|CBI14443.1| putative DNA polymerase IV [Streptococcus gallolyticus UCN34]
Length = 365
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I ++ + KE TCSAG+++NK LAKLAS KP T + + L
Sbjct: 129 IKSAIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLKK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 229
V++ + KS GS +++ + + + + E+S +R+ L++N ++ T+
Sbjct: 247 VKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTI 297
Query: 230 TLHA 233
L
Sbjct: 298 VLKV 301
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 54 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 113
A I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V+ L L
Sbjct: 116 AAATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHPHRVEAFLTPL 175
Query: 114 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 173
P+ K+ +G + + L LG+ TVGDL SE +L+ +G + G L+ ARGI V
Sbjct: 176 PVNKVPGVGKVMQSKL-AALGIVTVGDLRDCSEAELEARFG-SFGLRLYQRARGIDERPV 233
Query: 174 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
++ +S S +F AL+ L L+E+ + R+A T+ L
Sbjct: 234 ESDQPVQSISSEDTFAEDLALEA-------LEPAIRRLAEKTWDATRRTDRVARTVVL 284
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 139 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTFILPDQAQDFLKPLPIEKFHGVG 198
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LGV T DLL SE L + +G G L+ ARGI+ V+ + KS
Sbjct: 199 KRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPNRVRKSI 256
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 257 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|383809839|ref|ZP_09965352.1| ImpB/MucB/SamB family protein [Rothia aeria F0474]
gi|383447374|gb|EID50358.1| ImpB/MucB/SamB family protein [Rothia aeria F0474]
Length = 445
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 57 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 116
V I +R ++ E CSAGI+ NK LAK+AS +KP VP V+ LD +P+
Sbjct: 144 VAIAQRVRERIADELSLPCSAGISINKFLAKMASTGSKPNGLWVVPPHRVQEFLDPMPVN 203
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 176
K+ +G + T L NE G+ TV L +F L +G G+ L+ +ARGI V
Sbjct: 204 KLWGVGARSAT-LLNEYGIYTVAQLREFDTQWLCGRFGNAAGSHLYALARGIDHRPVVTE 262
Query: 177 LLPKSHGSGKSF 188
+ KS G+ +F
Sbjct: 263 RVEKSMGAEHTF 274
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I +
Sbjct: 124 IAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGEF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
gi|300076398|gb|ADJ65797.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
Length = 384
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +++ V T TCS G+A NKMLAK++S ++KP T + + ++ + LP++K+
Sbjct: 142 VARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTILTPADIERRIWPLPVRKI 201
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L + LG+ TV DL + D L+ +G + WL +A+G+ VQ
Sbjct: 202 NGIGPKAAEKL-SALGIDTVADLAGAAPDLLRAHFGRSYAEWLGRVAQGVDDRPVQTYSE 260
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
PKS +F R L A + L+++ L +L +DL++ + T+ +
Sbjct: 261 PKSISRETTF--ERDLHARAD-RAQLSEIFTALCVKLAADLDRKGYVGRTIGI 310
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 18/236 (7%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I L ++L T T SAG+++NKMLAK+AS +NKP + + + SL I++
Sbjct: 124 IAERLSAEILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITPAQGADFVASLAIERF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + + LG+ T DL + S + L+ +G G + +++ARGI V+A
Sbjct: 184 HGI-GKATAAHMHALGIQTGADLRRLSRETLRHEFG-KHGDFYYDMARGIDLRPVEAARE 241
Query: 179 PKSHGSGKSFPGPRALKTVASV-QHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS GS +F R ++ A++ Q L Q E +D+++ HTLTL K
Sbjct: 242 RKSIGSETTF--ARDIEDHAALYQALLAQNREAF-----ADVQRRHLQPHTLTL---KLK 291
Query: 238 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 293
SD + + S P +ED L+E + V+ G YSG R
Sbjct: 292 YSDFSQTTRRQTLSTPF-----AREEDAHYWIARLLQEIAPARPVRLVGITYSGLR 342
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|424107414|ref|ZP_17842022.1| DNA polymerase IV [Escherichia coli 93-001]
gi|390670609|gb|EIN47151.1| DNA polymerase IV [Escherichia coli 93-001]
Length = 343
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 113 LIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 172
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 173 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 230
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|87162181|ref|YP_494528.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195793|ref|YP_500603.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|161510117|ref|YP_001575776.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|384862538|ref|YP_005745258.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|416840638|ref|ZP_11903844.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|416846097|ref|ZP_11906377.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|418988982|ref|ZP_13536651.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418994606|ref|ZP_13542240.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|421150671|ref|ZP_15610326.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422744266|ref|ZP_16798233.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|87128155|gb|ABD22669.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203351|gb|ABD31161.1| ImpB/MucB/SamB family superfamily [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160368926|gb|ABX29897.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|302751767|gb|ADL65944.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|320142358|gb|EFW34172.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439836|gb|EGA97552.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|323442999|gb|EGB00620.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|377716116|gb|EHT40300.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377743219|gb|EHT67202.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|394329366|gb|EJE55475.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
Length = 346
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 173
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 231
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|253734997|ref|ZP_04869162.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727179|gb|EES95908.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 346
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I +
Sbjct: 114 IAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGEF 173
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 231
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|241258700|ref|YP_002978584.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863170|gb|ACS60833.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 365
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ T T SAGI++NK LAK+AS NKP Q + + ++ LP+KK
Sbjct: 131 IAAEIRAKIKATTGLTASAGISYNKFLAKMASDQNKPDGQFVITPKNGPAFVERLPVKKF 190
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +Q LG+ T DL + + D L E +G +G + + IARGI +V+ +
Sbjct: 191 HGVGPATAEKMQR-LGIETGADLKERTLDFLVEHFG-KSGPYFYGIARGIDNRQVKPDRV 248
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 249 RKSIGAEDTF 258
>gi|154281677|ref|XP_001541651.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
gi|150411830|gb|EDN07218.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
Length = 1162
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +LR V ++T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 499 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLTVKDL 558
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 559 PGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPP 617
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 618 RKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|430761508|ref|YP_007217365.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011132|gb|AGA33884.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
Length = 372
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E++ V + T +CS GIA NK+LAK+AS ++KP T + S + + LP+ K+
Sbjct: 131 LANEIKAAVREATGLSCSIGIAPNKLLAKIASDLDKPDGLTVLAPSDLAARVWLLPVNKI 190
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K G LQ LG+ T+GDL + L+ +G G WL A G+ + +
Sbjct: 191 NGIGPKAGDRLQG-LGIRTIGDLAGAAPALLERHFGARMGGWLIRAAHGLDEQPIVTESE 249
Query: 179 PKSHGSGKSFPG------PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
P+S +F RAL T A L LCE ++ L + + + I L H
Sbjct: 250 PRSMTRETTFERDLHPRQDRALLTAA-----LTGLCERVAGDLAARGYRGRTIGIKLRYH 304
>gi|377809466|ref|YP_005004687.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056207|gb|AEV95011.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
Length = 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 6/195 (3%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D + K ++ VLI E++ ++ +T TCS GI++NK LAKLAS KP V
Sbjct: 119 LDVTNNKKNMSDSVLIAHEIQKEIFAKTNLTCSTGISYNKFLAKLASEYEKPVGVAMVFP 178
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V L+ +PI+ + +G K + ++LGV DLL FSE L +G G L+
Sbjct: 179 EDVTDFLNDMPIESFRGVGKKTIPKM-HDLGVHFGRDLLSFSESDLIHYFG-KFGYVLYR 236
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
RGI V + KS G ++ P L T V+ L + + L + + + + K
Sbjct: 237 QVRGIDDRPVAYQRERKSIGKEDTYINP--LTTDEEVELQLRIIAQNLLKYVTNQQKHGK 294
Query: 224 RIAHTLTLHASAFKS 238
I L L + F++
Sbjct: 295 TIV--LKLRYTDFET 307
>gi|261195218|ref|XP_002624013.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
gi|239587885|gb|EEQ70528.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
Length = 1171
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR V + T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 507 IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDL 566
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV +
Sbjct: 567 PGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-A 624
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 625 PRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|418898552|ref|ZP_13452620.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377758672|gb|EHT82555.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 346
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 173
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 231
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K
Sbjct: 123 LIAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFLEKLPIEK 182
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +G+ DL +FS L + +G +G +NI RGI EVQ
Sbjct: 183 FFGI-GKVTAEKMKSIGIHNGHDLKQFSIQYLTKKFG-KSGLHFFNIVRGIHLSEVQPNR 240
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ KS + +F + L S + L ++ EEL R+
Sbjct: 241 IRKSLSAENTF--EKDLSDRVSFEAALLEIFEELKRRI 276
>gi|239610626|gb|EEQ87613.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ER-3]
Length = 1171
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR V + T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 507 IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDL 566
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV +
Sbjct: 567 PGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-A 624
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 625 PRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|444983740|ref|ZP_21300613.1| DNA polymerase IV [Escherichia coli PA11]
gi|444600772|gb|ELV75593.1| DNA polymerase IV [Escherichia coli PA11]
Length = 351
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|82751548|ref|YP_417289.1| DNA polymerase IV [Staphylococcus aureus RF122]
gi|123548109|sp|Q2YU32.1|DPO4_STAAB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|82657079|emb|CAI81516.1| DNA polymerase IV [Staphylococcus aureus RF122]
Length = 328
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T V + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVVDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|238793960|ref|ZP_04637579.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
gi|238726727|gb|EEQ18262.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
Length = 352
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQAIFDELSLTASAGIAPIKFLAKIASDLNKPNGQYVITPNQIQPFLHDLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G LQ ELG+ T GD+ + + +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLVTCGDVQNYPQAELLKRFG-KFGHVLWERSHGIDEREISP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L ++L +LE R
Sbjct: 237 DRLRKSVGVERTL--------AEDIHDW--ESCEALIDQLYIELETRLR 275
>gi|386729583|ref|YP_006195966.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
gi|418311480|ref|ZP_12923003.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|418980100|ref|ZP_13527887.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|365234136|gb|EHM75076.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|379992131|gb|EIA13589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|384230876|gb|AFH70123.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
Length = 356
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|327348940|gb|EGE77797.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ATCC
18188]
Length = 1171
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR V + T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 507 IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDL 566
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV +
Sbjct: 567 PGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-A 624
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 625 PRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|417091376|ref|ZP_11956303.1| DNA polymerase IV [Streptococcus suis R61]
gi|353533248|gb|EHC02913.1| DNA polymerase IV [Streptococcus suis R61]
Length = 364
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 IGSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMALIDCFG-RFGYDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G +++ + L V L LC +R+ + LE+N++ T+ L
Sbjct: 247 VKTNRVRKSIGKERTY--RKLLYRDEDVLKELVSLC----QRVAASLERNEKQGRTIVL 299
>gi|22537865|ref|NP_688716.1| DNA polymerase IV [Streptococcus agalactiae 2603V/R]
gi|25011810|ref|NP_736205.1| DNA polymerase IV [Streptococcus agalactiae NEM316]
gi|76787674|ref|YP_330334.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76798415|ref|ZP_00780656.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77405963|ref|ZP_00783042.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|77413674|ref|ZP_00789858.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|406710106|ref|YP_006764832.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
gi|417006108|ref|ZP_11944678.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|424048829|ref|ZP_17786380.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|81588478|sp|Q8DXW9.1|DPO4_STRA5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81588721|sp|Q8E3I8.1|DPO4_STRA3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123601318|sp|Q3JZG9.1|DPO4_STRA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22534761|gb|AAN00589.1|AE014270_7 DNA-damage-inducible protein P [Streptococcus agalactiae 2603V/R]
gi|24413351|emb|CAD47430.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562731|gb|ABA45315.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76586247|gb|EAO62764.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77160274|gb|EAO71401.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|77175415|gb|EAO78205.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|341576289|gb|EGS26700.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|389649850|gb|EIM71325.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|406650991|gb|AFS46392.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
Length = 364
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 139 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVG 198
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LGV T DLL SE L + +G G L+ ARGI+ V+ + KS
Sbjct: 199 KRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSI 256
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 257 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|422747071|ref|ZP_16800996.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
gi|320139725|gb|EFW31594.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
Length = 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 173
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 231
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K
Sbjct: 112 MIAREIREKIKQKTGLNASAGISVNKFIAKVASDINKPNGQKTVNPEEVLDFLEQLEIRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ LG+ T DL SE L + +G G + +N+ RGI EV+
Sbjct: 172 FYGV-GKVTAEKMYRLGIFTGKDLKSKSEAYLADHFG-KHGPYYYNVVRGIHESEVKPNR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS G+ ++F + ++S L +L ++E + L+++K T+TL
Sbjct: 230 MRKSLGAERTFS-----ENISSEIFMLEKLT-NIAEEIERRLQKSKVAGKTVTL 277
>gi|294055037|ref|YP_003548695.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
gi|293614370|gb|ADE54525.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
Length = 350
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 4/187 (2%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
G I TE+R + +ET T SAGIA NK++AK+AS NKP Q V S V+ + LPI
Sbjct: 118 GAEIATEIRSTIERETGLTASAGIAPNKLIAKIASDWNKPNGQCIVGPSKVEAFMRPLPI 177
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K+ +G K ELG+ T G L + + +L +G + G L+ + RGI V+
Sbjct: 178 RKIWGIGPKSAQRF-AELGIETCGQLQELDQTQLTHRFG-SFGFELYKLCRGIDERPVEP 235
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 235
+ KS +F + L+T+ + + L + +EL + L + + + L +
Sbjct: 236 NRIRKSLSCEHTF--QQNLETLRACESQLERQFDELLQDLRASAPDRQITKLVIKLKFAD 293
Query: 236 FKSSDSD 242
F+ + ++
Sbjct: 294 FRQTTAE 300
>gi|51892170|ref|YP_074861.1| DinP-like DNA-damage-inducible protein [Symbiobacterium
thermophilum IAM 14863]
gi|81610604|sp|Q67QM6.1|DPO4_SYMTH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|51855859|dbj|BAD40017.1| DinP-like DNA-damage-inducible protein [Symbiobacterium
thermophilum IAM 14863]
Length = 361
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
V + EL+ + E T SAG+++ K LAKLAS M KP T + + + LL +LP+
Sbjct: 117 AVRVARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPV 176
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K+ +G +L + LG+ T GDLL + D L++ +G L +ARGI V
Sbjct: 177 RKLWGVGPASEQAL-HALGIYTCGDLLAYDPDTLRKHFG-KRADELILLARGIDPRPVVP 234
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G +FP + + +L++L E ++ L +L + A T+T+
Sbjct: 235 YREAKSIGEENTFP------VDQTDREYLSRLLERYADNLAEELRRQGLYARTVTV 284
>gi|297559858|ref|YP_003678832.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844306|gb|ADH66326.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 417
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 57 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 116
V I +R +V +E TCS G+A + AKL S KP VP + V+G LD LP+
Sbjct: 145 VRIAAMIRERVRREQRLTCSVGVAATRFTAKLGSTHCKPDGLLLVPTAHVRGFLDPLPVG 204
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 176
+ +G + +L LGV TVG L ++ D L+ G GT L ++RG+ V
Sbjct: 205 ALPGVGDRTEQTLAR-LGVRTVGQLARYEPDLLRMELGDKAGTRLAELSRGVDTSPVVPE 263
Query: 177 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS GS ++F A V V L +L E++ RL
Sbjct: 264 SPDKSIGSEETFDEDVADPEV--VDRELLRLAEKVGRRL 300
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 4/171 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H K I E+R + E T SAG+A K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V + +LP+ K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVSEFIKTLPLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ GI EVQA KS G ++ + T+ LN L +EL RL
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--IENIHTIEQASALLNNLYQELIRRL 277
>gi|342183906|emb|CCC93386.1| putative DNA polymerase eta [Trypanosoma congolense IL3000]
Length = 517
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LLA +V+++R ++ E F CSAGIAHNK+LAK S +KP QQT + V +
Sbjct: 200 LLAAASHVVSKIRQRIYDELRFDCSAGIAHNKLLAKSISARHKPNQQTLLFPDCVASAMW 259
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGIS 169
+P +K++ GGK G + G + + S+ N + + RG
Sbjct: 260 DMPFRKIRGFGGKFGEIVHKACGCKEMCQETWLFSLPVMRSFFVNDCDAEYAYRRLRGYD 319
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 214
++ R + KS + K+F P T V+ W+ L ELS R
Sbjct: 320 EGKIAERSISKSLIASKAFNPPSL--TTDGVKRWVVVLASELSSR 362
>gi|242096850|ref|XP_002438915.1| hypothetical protein SORBIDRAFT_10g028100 [Sorghum bicolor]
gi|241917138|gb|EER90282.1| hypothetical protein SORBIDRAFT_10g028100 [Sorghum bicolor]
Length = 1017
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +R ++ T+ T SAGIA N +LA+LA+ KP Q +P L SL IK +
Sbjct: 389 VTQRIRSEIFHATKCTASAGIAENMLLARLATRSAKPNGQCFIPSEKADDYLSSLSIKAL 448
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + L+++ + G L +D L + +G TG LWN RGI V +
Sbjct: 449 PGIGHTVSSKLKSK-EIEYCGQLRNVPKDALHKDFGKKTGDLLWNYCRGIDHSVVGSVQE 507
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G+ ++ G R +H+L LC+E+S RL
Sbjct: 508 TKSVGAEINW-GVR-FNDNKDAEHFLTNLCKEVSLRL 542
>gi|312378180|gb|EFR24822.1| hypothetical protein AND_10339 [Anopheles darlingi]
Length = 825
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 11/206 (5%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C D R L I E+R + +E C AGIAHNK+LAKL MNKP +QT +
Sbjct: 243 CLCGCDRR---LILATHIAQEIRECIFRELGLRCCAGIAHNKLLAKLVGAMNKPNKQTVL 299
Query: 102 PFSSVKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
++ + SL ++ + +G K +L VTTV DL + ++L G
Sbjct: 300 LPTASSSFVASLGCVRSLTGIGEKTAQTLAECCNVTTVTDLQQIELERLARHVGHEQAVR 359
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L IA G V+ PKS G S P SV+ + L RL ++
Sbjct: 360 LKQIALGRDDTPVRQTGKPKSVGLEDSCPA-------ISVRADAEEKFRHLLVRLVKNIA 412
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKK 246
++ R+ + + F S+ + ++
Sbjct: 413 EDGRVPIAIKVTVRKFDSTKRTTHRE 438
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I ++ + E + T SAG++ NK +AK+AS +NKP T + SS++ ++
Sbjct: 125 IGSAIEIAKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPSSIESFMEK 184
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K + GK+ +G+ T DL + SE+ L+ +G G + + I RGI E
Sbjct: 185 LPVEKFFGV-GKVTADKMKRMGLHTGADLKRLSENDLKTHFG-KVGAFYYRIVRGIDERE 242
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ KS G+ +F P L + L ++ + ERL
Sbjct: 243 VQPHRETKSLGAEDTF--PYDLTRTEEMNAELEKIAVTVYERL 283
>gi|209882993|ref|XP_002142930.1| DNA polymerase eta [Cryptosporidium muris RN66]
gi|209558536|gb|EEA08581.1| DNA polymerase eta, putative [Cryptosporidium muris RN66]
Length = 717
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L+ G I+ +R ++L++ +TCSAGI+ NKMLAKL + KP Q+ + + +
Sbjct: 297 LILLGATIIYRVRNRLLQDLNYTCSAGISINKMLAKLVCSLRKPNGQSVLLSRWINQYMG 356
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTV-GDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
LPI K++ LGGKLG + +L + + DLL++++ L + +G G +L+N RGI
Sbjct: 357 ILPILKLRLLGGKLGKLVSEKLPMVRMSSDLLQYNKGTLIKLFGEKNGEYLYNTCRGIDL 416
Query: 171 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 214
E V +S S K+F L + + WL+ ELSER
Sbjct: 417 EAVIETQHYRSILSSKNFYS--GLDNLDEIFKWLHIFSSELSER 458
>gi|406601529|emb|CCH46835.1| N-acetyltransferase [Wickerhamomyces ciferrii]
Length = 657
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 25/239 (10%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D L+ G I E+R+QV KE +T SAG+ K +AKLASG KP QT V +S+
Sbjct: 229 DWDDLLMIIGGQITNEIRLQVQKELGYTLSAGVGRVKTIAKLASGFRKPDNQTIVRNNSI 288
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN---------- 156
L + +GGK G ++ +L + D + F ++ +Y N
Sbjct: 289 NNFLKNFDFTDFWSMGGKTGEFIKMKLS-PPLEDSIAF----IRNNYDLNELQDYLEDKE 343
Query: 157 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
+ L+ + RG + + +R++ KS S K+ +++K++ W+ +L +RL
Sbjct: 344 LASKLYQLIRGEYMQSLSSRIILKSMNSNKNIRF-KSVKSLGDSIQWIKVFSADLYQRLI 402
Query: 217 SDLEQN--KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 273
++N K T+++H F+S ++ ++ S PL I E LFQ G+
Sbjct: 403 ETNDENGYKTRPKTISIH---FRSINNFNQPHSKQSSLPL----VPIDELESVLFQYGV 454
>gi|325979102|ref|YP_004288818.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|325179030|emb|CBZ49074.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
Length = 365
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I ++ + +E TCSAG+++NK LAKLAS KP T + + L+
Sbjct: 129 IKSAIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 229
V++ + KS GS +++ + + + + E+S +R+ L++N ++ T+
Sbjct: 247 VKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTI 297
Query: 230 TLHA 233
L
Sbjct: 298 VLKV 301
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 7/210 (3%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + +LI ++R ++ ++T SAG+++NK LAK+AS +NKP Q +
Sbjct: 114 LDVTENKKGINSAILIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKPNGQAYILP 173
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ L+ LPI K +G +Q ++G+ DL +FS L + +G +G +N
Sbjct: 174 EDAEEFLEKLPIGKFFGIGKVTAEKMQ-KIGIHNGADLKQFSLQFLSKKFG-KSGLHYFN 231
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
I RGI EVQ + KS + +F L T + + L + EE+ RL + +
Sbjct: 232 IVRGIHLSEVQPHRVRKSLSAENTFEVD--LTTDEELLNKLQPIYEEVIRRLDKSGIKGR 289
Query: 224 RIAHTLTLHASAFK-SSDSDSRKKFPSKSC 252
+ TL L S F + S + +++P K
Sbjct: 290 TV--TLKLKYSDFSLQTRSKTLEQYPDKEM 317
>gi|359318428|ref|XP_003432548.2| PREDICTED: DNA polymerase iota [Canis lupus familiaris]
Length = 763
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 220 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLIQS 279
Query: 113 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L +K+M +G K L+ LG+++V DL FS L++ G + + ++ G
Sbjct: 280 LNHVKEMPGIGYKTAKRLE-ALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGEDNS 338
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S SF + + V++ + +L L R+C Q+ R HT+ L
Sbjct: 339 PVTPSGPPQSFSEEDSF---KKCSSEVEVKNKIEELLASLLNRVC----QDGRKPHTIRL 391
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
+ S + SR+ S+ CP+
Sbjct: 392 IIRRYSSENHCSRE---SRQCPI 411
>gi|118575583|ref|YP_875326.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Cenarchaeum symbiosum A]
gi|118194104|gb|ABK77022.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Cenarchaeum symbiosum A]
Length = 363
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +++ V ++T TCS G+ N++L+K+AS KP T VP V L+ L I+ +
Sbjct: 130 LAQQVKNAVRRKTRLTCSVGVTPNRLLSKIASDYKKPDGLTVVPPGKVAEFLEPLDIRDI 189
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+GGK +L E+G+ TVG + +LQ+ +G +GT + N ARGI E V R
Sbjct: 190 PGIGGKTEKALA-EMGIRTVGQMRSVDIFELQQRFGRRSGTHMHNAARGIDDEPVSEREP 248
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
H + T+ + L E L E LC DL
Sbjct: 249 NVQHSR---------IVTLKRDSNEFGFLAETLGE-LCRDL 279
>gi|386742568|ref|YP_006215747.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
gi|384479261|gb|AFH93056.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
Length = 351
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI +R Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK
Sbjct: 121 LIAQAIRQQIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSLPLKK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L + +G+ T GD+ + L + G G LW GI V
Sbjct: 181 IPGVGKVTAQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSVNPDR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 226
L KS G ++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 239 LRKSVGVERTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 284
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 144 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVG 203
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LGV T DLL SE L + +G G L+ ARGI+ V+ + KS
Sbjct: 204 KRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSI 261
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 262 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 304
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K
Sbjct: 123 LIAQEIRDRIKEEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFLEKLPIEK 182
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +G+ DL +FS L + +G +G +NI RGI EVQ
Sbjct: 183 FFGI-GKVTAEKMKSIGIHNGHDLKQFSLQYLTKKFG-KSGLHFFNIVRGIHLSEVQPNR 240
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ KS + +F + L S + L ++ EEL R+
Sbjct: 241 IRKSLSAENTF--EKDLSDRVSFEAALLEIFEELKRRI 276
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K
Sbjct: 126 LIAKEIRQKIYDTIGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVSLFLEELEIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ T DL + + L+ ++G N G++ +N+ RGI V+
Sbjct: 186 FYGV-GKVTAEKMYKLGIFTGKDLKLKTLEFLEGNFGKN-GSYYYNVVRGIHTSPVKPHR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+PKS G+ ++F L + + L+ + EEL +RL
Sbjct: 244 IPKSVGAERTF--NENLSSEIFMLERLDHIAEELEKRL 279
>gi|425107620|ref|ZP_18509892.1| DNA polymerase IV [Escherichia coli 6.0172]
gi|408561085|gb|EKK37328.1| DNA polymerase IV [Escherichia coli 6.0172]
Length = 312
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 82 LIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 141
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 142 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 199
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 200 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|294507553|ref|YP_003571611.1| DNA polymerase IV [Salinibacter ruber M8]
gi|294343881|emb|CBH24659.1| DNA polymerase IV [Salinibacter ruber M8]
Length = 373
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 11/201 (5%)
Query: 55 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 114
G LI LR ++ +ET T SAG+ K +AK+AS ++KP T V + LP
Sbjct: 135 SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLP 194
Query: 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
I+K +G +Q ELG+ T DL + E L +G G +A G VQ
Sbjct: 195 IEKFHGIGPVTAAKMQ-ELGIQTGADLQETPERTLIHHFG-KRGRHFKTLAVGTDDRPVQ 252
Query: 175 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 234
KS G+ ++FP + +A + L +L ++ER+ L Q R T+TL
Sbjct: 253 PDRDRKSVGAERTFP-----EDIARAETMLERLS-PIAERVAQRLRQANRKGRTVTLK-- 304
Query: 235 AFKSSDSDSRKKFPSKSCPLR 255
KS D + + PLR
Sbjct: 305 -LKSHDHQVSTRQTTVDRPLR 324
>gi|429730965|ref|ZP_19265607.1| ImpB/MucB/SamB family protein [Corynebacterium durum F0235]
gi|429146693|gb|EKX89741.1| ImpB/MucB/SamB family protein [Corynebacterium durum F0235]
Length = 458
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 14/196 (7%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
LR + +ET T S G K AK+ASG KP VP + LLD LP++K+ +G
Sbjct: 128 LRRLIREETGLTSSIGAGSGKQYAKIASGQAKPDGVFVVPRAREHELLDPLPVRKLWGIG 187
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
T LQ +GV T+GD K S ++ + G G LW +A+G V+ R + K
Sbjct: 188 PVAETKLQR-IGVATIGDFAKLSGVEVDMTLGSTVGRALWQLAKGHDDRPVEPRAIAKQI 246
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 242
+ ++ + L TVA + +++ RL +D R A T+TL K +D
Sbjct: 247 SAEHTY--SKDLTTVADIDAAIDRAASGAYRRLLTD----GRGARTVTLK---LKMADF- 296
Query: 243 SRKKFPSKSCPLRYGT 258
+ S+S L Y T
Sbjct: 297 ---RIESRSQSLLYAT 309
>gi|374338723|ref|YP_005095440.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
gi|372284840|emb|CCF03144.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
Length = 365
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I ++ + +E TCSAG+++NK LAKLAS KP T + + L+
Sbjct: 129 IKSAIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFYGVGKRSVEKL-HQLGVFTGADLLEMPEMTLIDLFG-RFGYDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 229
V++ + KS GS +++ + + + + E+S +R+ L++N ++ T+
Sbjct: 247 VKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTI 297
Query: 230 TLHA 233
L
Sbjct: 298 VLKV 301
>gi|212696530|ref|ZP_03304658.1| hypothetical protein ANHYDRO_01068 [Anaerococcus hydrogenalis DSM
7454]
gi|212676466|gb|EEB36073.1| hypothetical protein ANHYDRO_01068 [Anaerococcus hydrogenalis DSM
7454]
Length = 347
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I +++ QVLK+T S GI++NK LAKLAS NKP + + + +L+ L IKK
Sbjct: 116 IIAKKIQNQVLKQTGIGVSIGISYNKFLAKLASDWNKPFGIKEINENDIPNILEDLDIKK 175
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ LG K L+ ++G+ V DLLK ++ L+ +G G +++ + RG +V+
Sbjct: 176 VHGLGNKSVEKLK-DIGIYKVKDLLKLDQEFLESLFG-KQGRYIYKVIRGEDKRKVETS- 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
K G+ F + K + + ++ +E+S+++ +DL+ A+T+ L
Sbjct: 233 -SKRKSIGREFTFRKNTKDMKILYAYI----DEISKKIENDLKAKDIKAYTINL 281
>gi|399926725|ref|ZP_10784083.1| DNA polymerase IV, damage-inducible protein DinB [Myroides
injenensis M09-0166]
Length = 347
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ + + T SAGI+ NK LAK+AS NKP Q T+ V L++L IKK
Sbjct: 112 LIAYEIRKKIYERLQLTASAGISINKFLAKIASDYNKPNGQKTINPDEVIEFLENLEIKK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G K + + G+ T DL + S D L +G GT +NI RG+ VQ
Sbjct: 172 FFGIGKKTAEKMYH-FGIFTGKDLKEKSLDFLVTHFG-KAGTDYYNIVRGVHESPVQPNR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
KS G+ ++F L + + L+ + EEL RL K I TL L S F
Sbjct: 230 KIKSVGTERTF--DENLSSEVFLMERLDLIVEELGLRLKKQNVAGKTI--TLKLKYSDF 284
>gi|309782562|ref|ZP_07677285.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
gi|308918653|gb|EFP64327.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
Length = 357
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V + G +
Sbjct: 115 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVA 174
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
LP+ ++ +G L+ LG T GDL + D+LQ+ +G G L ++ RGI
Sbjct: 175 ELPVDRLFGVGKVTAAELRR-LGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHR 232
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L+ L E+L+ R+
Sbjct: 233 QVQPSQIRKSVSVEETYATD--LRTLDDCQRELSVLVEQLAARV 274
>gi|213513962|ref|NP_001133709.1| DNA polymerase iota [Salmo salar]
gi|209155032|gb|ACI33748.1| DNA polymerase iota [Salmo salar]
Length = 757
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 113/246 (45%), Gaps = 23/246 (9%)
Query: 10 LDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLK 69
+++ E A S+ + S D +D+K V LLA G I ELR ++
Sbjct: 157 MEQTPESAHYSYEGHVYSLDTSDAKVMVH------------PLLAVGSHIAAELRAEIHS 204
Query: 70 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLGGKLGTS 128
+ T AGIA +K+LAKL +G KP QQTT+ SVK ++ SL ++K+ +G +
Sbjct: 205 KLGLTGCAGIATSKLLAKLVAGTFKPNQQTTLLPESVKDIMGSLNGLRKVPGVGHQTAKR 264
Query: 129 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 188
LQ LG+ V DL F L +G +T L N+A GI V P+S SF
Sbjct: 265 LQ-ALGLVGVQDLQLFPLADLVREFGVSTAQRLQNLALGIDDTPVTPTGAPQSLSDEDSF 323
Query: 189 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 248
+ + + V + L L +R+ D Q + T+ +++ K +SR+
Sbjct: 324 ---KKMSSTNEVWQKVKDLLSSLLDRMHKDGRQPFTLRLTIRRYSATNKWFSRESRQ--- 377
Query: 249 SKSCPL 254
CP+
Sbjct: 378 ---CPI 380
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|340386730|ref|XP_003391861.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 427
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 120/259 (46%), Gaps = 40/259 (15%)
Query: 2 LAETPPESLDEVDEEALK-----SHILGLESKDG-----NDSKATVKEWLCRCDADH--R 49
L + PES E D + L+ SH ++ + G ND+ + L CD+D
Sbjct: 142 LIQIDPESSQETDTKLLQIDDPESHSTDMKLQYGSSESLNDTDLHQSDDLV-CDSDQCLP 200
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
+ C +V E+R ++ T+ T SAGIA NKMLAK+AS MNKP Q +P S K L
Sbjct: 201 NSYWECAERVVNEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKIL 260
Query: 110 --LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK---LQESYGFNTGTWLWNI 164
+ LPI+K+ + GK+ + N LG+ T D+ DK L+ + + + NI
Sbjct: 261 EFIRKLPIRKVSGI-GKVTEKMLNALGIVTGADIY----DKRGLLRLMFSKCSYDYFMNI 315
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW----LNQLCEELSERLCSDLE 220
GI V + KS + ++FP W L Q C +L L ++E
Sbjct: 316 CLGIGSCTVHSEWERKSISTERTFPDI-----------WKPSELFQKCHKLCYSLTEEVE 364
Query: 221 QN--KRIAHTLTLHASAFK 237
++ K TL L SAF+
Sbjct: 365 ESNIKGKTVTLKLKTSAFE 383
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I +++ ++ +E T SAG++ NK +AK+AS +NKP T + S V ++
Sbjct: 119 IGSAIDIARQIKQEIREELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFMEH 178
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K + GK+ S +LG+ D+ +++++ L +G TG + +NI RG+
Sbjct: 179 LPIEKFFGV-GKVTASKMKKLGIHRGADMKQWTQEALTRHFG-KTGKFFYNIVRGVDNRP 236
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
VQ KS +F + +A +Q L + +ELS RL L + T+TL
Sbjct: 237 VQPNRQTKSISVEDTFA-----QDIADLQ-VLEDILKELSGRLAKRLNAKQLAGKTVTL 289
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++LP+K+
Sbjct: 152 IALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKRF 211
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +Q G+ T DL S LQ +G +G++ + IARGI +V+A +
Sbjct: 212 HGVGPATAERMQRH-GIETGLDLKSKSLQFLQTHFG-KSGSYFYGIARGIDERQVRADRI 269
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 270 RKSVGAEDTF 279
>gi|320163305|gb|EFW40204.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LL G +++ ELR +L CSAGIAHNK+LAKLA+ + KP Q V S+ LL
Sbjct: 172 LLEAGAVLIAELRAAILSVLSLECSAGIAHNKLLAKLATRLAKPNGQVVVVNSNPLLLLQ 231
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT--WLWNIARGIS 169
+ GGK+ +L+ +G+ T GD+L+ L +G ++ T L RG
Sbjct: 232 E---AGIPSFGGKVTDTLKT-VGIETGGDVLRAPPSFLASLFGASSPTPASLLRACRGED 287
Query: 170 GEEVQARLLPKSHGSGKSFP---------GPRA----LKTVASVQHWLNQLCEELSERLC 216
EV R L KS S + GP A + + ++ +L E+L+ER
Sbjct: 288 DSEVVDRGLIKSISSQMALTAWARPRFGGGPTATIEPVGVSEDISLFIRELAEDLAERTL 347
Query: 217 SDLEQNKRIAHTLTLHASAFKSSDSDSRKK-FP 248
D + R TLT+ A++ D+ SR + FP
Sbjct: 348 EDQIVHSRHPSTLTV---AYRVDDTWSRSRTFP 377
>gi|77412153|ref|ZP_00788476.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
gi|77161813|gb|EAO72801.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
Length = 364
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 139 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVG 198
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LG+ T DLL SE L + +G G L+ ARGI+ V+ + KS
Sbjct: 199 KRSVEKL-HALGIYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSI 256
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 257 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R Q+ ET T SAG+A NK LAK+AS NKP Q + + V L LP++K+ +
Sbjct: 129 IRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQFVIRPTRVLEFLQPLPVRKVPGV- 187
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
GK+ + +LG+ TVGDL +L+ +G G L+ +ARGI EVQ
Sbjct: 188 GKVTQARLEQLGIQTVGDLATHGVQELEHYFG-RYGRRLYELARGIDEREVQ 238
>gi|195999238|ref|XP_002109487.1| hypothetical protein TRIADDRAFT_2325 [Trichoplax adhaerens]
gi|190587611|gb|EDV27653.1| hypothetical protein TRIADDRAFT_2325, partial [Trichoplax
adhaerens]
Length = 386
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 7/197 (3%)
Query: 36 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
TVK C C+ R + G I E+R + T S GIAHNKML+K+ SG++KP
Sbjct: 133 TVKAQACDCNCRLR---MIIGSQIAAEMRQGLWNVFSLTSSGGIAHNKMLSKIVSGLHKP 189
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
QT + LL SL ++K+ +G LQ+ +G+TTV +L L+ +
Sbjct: 190 NLQTAIYPEDTLDLLHSLELRKIAGIGSATNNKLQS-VGITTVKELSTLPLAVLKTHFPT 248
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
L+ +GI +V A PKS G SF R +AS + ++ L L RL
Sbjct: 249 PQACTLFQWCKGIDDSDVVAATKPKSIGVEDSF--SRCCTMIAS-KKRISDLIRHLLSRL 305
Query: 216 CSDLEQNKRIAHTLTLH 232
E + + T+ H
Sbjct: 306 VDGCEHPQTVKLTIIKH 322
>gi|365924462|ref|ZP_09447225.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265373|ref|ZP_14767934.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394428158|gb|EJF00745.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 361
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + ++I L+ ++ +T T S GI+HNK LAK+AS +KP T +
Sbjct: 113 LDVTQNKKEIHSPLIIARMLQQEIFSKTGLTSSTGISHNKFLAKMASDYHKPIGTTLIRE 172
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ L LPI+K + +G K + +EL + T DLLK SE +L S+G G +
Sbjct: 173 EDILSFLAPLPIEKFRGVGVKTAEKM-HELNINTGLDLLKKSELELIASFG-KMGEIFYQ 230
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 208
RGI V+ + KS G+ ++F +ALK+ V+ N L
Sbjct: 231 HVRGIDERPVEWKRERKSMGNERTF--AQALKSTTEVEEMFNYLA 273
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|332522339|ref|ZP_08398591.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
gi|332313603|gb|EGJ26588.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
Length = 364
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L V I ++ + KE TCSAGI++NK LAKLAS KP T + + L+
Sbjct: 129 LTSAVKIAKLIQYDIWKELHLTCSAGISYNKFLAKLASDFEKPHGLTLILPDQAQPFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +E+GV DLL SE L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGIKSVEKL-HEMGVYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISYSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+A + KS GS +++
Sbjct: 247 VKANRIRKSIGSERTY 262
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ +E T SAGI+ NK +AK+AS NKP Q TV ++ L+ L +KK
Sbjct: 112 LIAQEIRKRIFEEVGLTASAGISANKFVAKIASDYNKPNGQKTVNPDEIEPFLEKLDVKK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ T DL + S + L+ +G N+G + I RGI V+
Sbjct: 172 FYGV-GKVTAEKMYQLGIFTGYDLKQKSVEYLENHFG-NSGLHYFQIVRGIHNSAVKPNR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ ++F L + ++ L + +EL +R L+++K T+TL
Sbjct: 230 KIKSVGAERTF--GENLSSEIFMEERLQSIAKELEKR----LQKSKISGKTITL 277
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 125 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G ++ LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 185 HGVGPATARRMRT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRP 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
KS G +F + L+T A + L +L ++
Sbjct: 243 RKSLGKEVTF--EQDLRTPAELHAALRELASKV 273
>gi|188025344|ref|ZP_02958315.2| hypothetical protein PROSTU_00018 [Providencia stuartii ATCC 25827]
gi|188023887|gb|EDU61927.1| DNA polymerase IV [Providencia stuartii ATCC 25827]
Length = 359
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI +R Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK
Sbjct: 129 LIAQAIRQQIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSLPLKK 188
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L + +G+ T GD+ + L + G G LW GI V
Sbjct: 189 IPGVGKVTAQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSVNPDR 246
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 226
L KS G ++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 247 LRKSVGVERTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 292
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + + E+R + ET T SAGIA NK LAK+AS KP Q +P
Sbjct: 138 LDVTHNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 197
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V L++LP+ K+ + GK+ LG+ T GDL +F +L +G G L++
Sbjct: 198 HKVMAFLETLPLGKIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYD 255
Query: 164 IARGISGEEVQA 175
+ARG V+A
Sbjct: 256 LARGTDERPVKA 267
>gi|169830932|ref|YP_001716914.1| DNA polymerase IV [Candidatus Desulforudis audaxviator MP104C]
gi|169637776|gb|ACA59282.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
MP104C]
Length = 395
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I L+ ++ +E TCS GI NK+LAK+A+G+ KP T + V L LP++++
Sbjct: 124 IALALKRRIRREVGVTCSVGIGPNKLLAKMAAGLRKPDGLTVLRHEDVPARLWPLPVREL 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L+ LG+ T+GDL F L+ +G G LW A G+ V R L
Sbjct: 184 FGVGPRYEEHLRR-LGIRTIGDLASFPVRVLKMRFGVY-GELLWRCANGVDESPVDPRSL 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ +G PR + ++ + +L ++++ R+ + + + L+L + F+
Sbjct: 242 DRCKSAGHQITLPRDYRRHGEIRVVILELADQVAARVRAGGYAGRTV--VLSLKDAGFR 298
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L LI ++R ++ E T SAGI+ NK +AK+AS NKP Q TV V L+
Sbjct: 121 LPSATLIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPEDVLQFLED 180
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
L I+K + GK+ + G+ T DL S D L++++G +G ++I RGI +
Sbjct: 181 LDIRKFYGV-GKVTAEKMYQKGIFTGKDLKSKSADYLEKNFG-KSGRSYYHIVRGIHNSK 238
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS + ++F L + + L Q+ EE+S+R L+++K T+TL
Sbjct: 239 VKPNRIRKSLAAERTF--RENLSSEIFMLEKLRQIAEEVSKR----LDKSKVAGKTITL 291
>gi|398338012|ref|ZP_10522717.1| DNA polymerase IV [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 362
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++LK T+ T S G+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVTIAKEIRAEILKRTQLTASVGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL + D+L +G G + +
Sbjct: 169 DDVISFIDPLPVSSFHGV-GKVTAQKMEELGIRTGKDLRAKNIDELISHFG-KMGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
I+RG EVQ+ KS G+ +F + + + + L ++ E+ +RL
Sbjct: 227 ISRGEDDREVQSSRERKSLGAETTFEQDKVDRE--DLLYQLREVAVEVEDRL 276
>gi|404396203|ref|ZP_10987998.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
gi|348614689|gb|EGY64228.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
Length = 340
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V + G +
Sbjct: 98 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVA 157
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
LP+ ++ +G L+ LG T GDL + D+LQ+ +G G L ++ RGI
Sbjct: 158 ELPVDRLFGVGKVTAAELRR-LGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHR 215
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L+ L E+L+ R+
Sbjct: 216 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELSVLVEQLAARV 257
>gi|339480167|ref|ZP_08655826.1| DNA repair nucleotidyltransferase/DNA polymerase [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 361
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ G + E+R Q+LKET+ T S G++HNK+LAKL S NKP T + + LD
Sbjct: 125 ILSGATLAAEIRHQILKETQLTSSIGVSHNKLLAKLGSEYNKPNGVTVIDHENQLQFLDY 184
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI + +G K +ELG+ DL + S++ L+ +G G L+ ARG+
Sbjct: 185 LPISAFRGVGKKTKEKF-DELGIENGLDLRQMSQETLKTEFG-KMGERLYWQARGVHFGA 242
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + +S G ++F AL +VQ +L L L++ K I TL +
Sbjct: 243 VEWQRQRQSIGKEETF--DHALHDNNAVQIEFKKLVSS----LIMSLKRQKLIGRTLNI 295
>gi|306834307|ref|ZP_07467424.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|336065017|ref|YP_004559876.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
gi|304423480|gb|EFM26629.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|334283217|dbj|BAK30790.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
Length = 381
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 14/178 (7%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I ++ + +E TCSAG+++NK LAKLAS KP T + + L+ LPI+K
Sbjct: 151 IAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEKLPIEKF 210
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L ++LGV T DLL+ E L + +G G L+ ARGIS V++ +
Sbjct: 211 YGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKSNRI 268
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHA 233
KS GS +++ + + + + E+S +R+ L++N ++ T+ L
Sbjct: 269 RKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLKV 317
>gi|418932215|ref|ZP_13486045.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418991828|ref|ZP_13539487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|424767720|ref|ZP_18195035.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|377711767|gb|EHT35994.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377721523|gb|EHT45654.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|402348809|gb|EJU83783.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|408423947|emb|CCJ11358.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408425936|emb|CCJ13323.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408427924|emb|CCJ15287.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408429913|emb|CCJ27078.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408431899|emb|CCJ19214.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408433894|emb|CCJ21179.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408435886|emb|CCJ23146.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408437869|emb|CCJ25112.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
Length = 346
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 173
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 231
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|108808712|ref|YP_652628.1| DNA polymerase IV [Yersinia pestis Antiqua]
gi|108811029|ref|YP_646796.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|145600117|ref|YP_001164193.1| DNA polymerase IV [Yersinia pestis Pestoides F]
gi|149364926|ref|ZP_01886961.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
gi|161511436|ref|NP_992091.2| DNA polymerase IV [Yersinia pestis biovar Microtus str. 91001]
gi|162421814|ref|YP_001607653.1| DNA polymerase IV [Yersinia pestis Angola]
gi|165926575|ref|ZP_02222407.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
gi|165935841|ref|ZP_02224411.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
gi|166212896|ref|ZP_02238931.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
gi|167421635|ref|ZP_02313388.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423673|ref|ZP_02315426.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167467178|ref|ZP_02331882.1| DNA polymerase IV [Yersinia pestis FV-1]
gi|218930258|ref|YP_002348133.1| DNA polymerase IV [Yersinia pestis CO92]
gi|229838837|ref|ZP_04458996.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896011|ref|ZP_04511181.1| DNA polymerase IV [Yersinia pestis Pestoides A]
gi|229899406|ref|ZP_04514549.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
195]
gi|229901251|ref|ZP_04516373.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|294504948|ref|YP_003569010.1| DNA polymerase IV [Yersinia pestis Z176003]
gi|384127272|ref|YP_005509886.1| DNA polymerase IV [Yersinia pestis D182038]
gi|384138931|ref|YP_005521633.1| DNA polymerase IV [Yersinia pestis A1122]
gi|420548296|ref|ZP_15046116.1| DNA polymerase IV [Yersinia pestis PY-01]
gi|420553652|ref|ZP_15050898.1| DNA polymerase IV [Yersinia pestis PY-02]
gi|420559256|ref|ZP_15055772.1| DNA polymerase IV [Yersinia pestis PY-03]
gi|420564644|ref|ZP_15060606.1| DNA polymerase IV [Yersinia pestis PY-04]
gi|420569691|ref|ZP_15065190.1| DNA polymerase IV [Yersinia pestis PY-05]
gi|420575361|ref|ZP_15070322.1| DNA polymerase IV [Yersinia pestis PY-06]
gi|420580671|ref|ZP_15075150.1| DNA polymerase IV [Yersinia pestis PY-07]
gi|420586015|ref|ZP_15079991.1| DNA polymerase IV [Yersinia pestis PY-08]
gi|420591130|ref|ZP_15084588.1| DNA polymerase IV [Yersinia pestis PY-09]
gi|420596491|ref|ZP_15089408.1| DNA polymerase IV [Yersinia pestis PY-10]
gi|420602178|ref|ZP_15094470.1| DNA polymerase IV [Yersinia pestis PY-11]
gi|420607609|ref|ZP_15099380.1| DNA polymerase IV [Yersinia pestis PY-12]
gi|420613002|ref|ZP_15104216.1| DNA polymerase IV [Yersinia pestis PY-13]
gi|420618382|ref|ZP_15108904.1| impB/mucB/samB family protein [Yersinia pestis PY-14]
gi|420623663|ref|ZP_15113664.1| DNA polymerase IV [Yersinia pestis PY-15]
gi|420628758|ref|ZP_15118288.1| DNA polymerase IV [Yersinia pestis PY-16]
gi|420633882|ref|ZP_15122879.1| DNA polymerase IV [Yersinia pestis PY-19]
gi|420639089|ref|ZP_15127568.1| DNA polymerase IV [Yersinia pestis PY-25]
gi|420644535|ref|ZP_15132533.1| DNA polymerase IV [Yersinia pestis PY-29]
gi|420649846|ref|ZP_15137335.1| DNA polymerase IV [Yersinia pestis PY-32]
gi|420655496|ref|ZP_15142413.1| DNA polymerase IV [Yersinia pestis PY-34]
gi|420660989|ref|ZP_15147329.1| DNA polymerase IV [Yersinia pestis PY-36]
gi|420666281|ref|ZP_15152093.1| DNA polymerase IV [Yersinia pestis PY-42]
gi|420671132|ref|ZP_15156514.1| impB/mucB/samB family protein [Yersinia pestis PY-45]
gi|420676485|ref|ZP_15161380.1| DNA polymerase IV [Yersinia pestis PY-46]
gi|420682109|ref|ZP_15166460.1| DNA polymerase IV [Yersinia pestis PY-47]
gi|420687445|ref|ZP_15171201.1| DNA polymerase IV [Yersinia pestis PY-48]
gi|420692654|ref|ZP_15175773.1| DNA polymerase IV [Yersinia pestis PY-52]
gi|420698427|ref|ZP_15180850.1| DNA polymerase IV [Yersinia pestis PY-53]
gi|420704266|ref|ZP_15185490.1| impB/mucB/samB family protein [Yersinia pestis PY-54]
gi|420709604|ref|ZP_15190235.1| DNA polymerase IV [Yersinia pestis PY-55]
gi|420715084|ref|ZP_15195104.1| DNA polymerase IV [Yersinia pestis PY-56]
gi|420720594|ref|ZP_15199828.1| DNA polymerase IV [Yersinia pestis PY-58]
gi|420726063|ref|ZP_15204643.1| DNA polymerase IV [Yersinia pestis PY-59]
gi|420731652|ref|ZP_15209667.1| DNA polymerase IV [Yersinia pestis PY-60]
gi|420736664|ref|ZP_15214194.1| DNA polymerase IV [Yersinia pestis PY-61]
gi|420742140|ref|ZP_15219115.1| DNA polymerase IV [Yersinia pestis PY-63]
gi|420747868|ref|ZP_15223957.1| DNA polymerase IV [Yersinia pestis PY-64]
gi|420753296|ref|ZP_15228806.1| DNA polymerase IV [Yersinia pestis PY-65]
gi|420759087|ref|ZP_15233462.1| DNA polymerase IV [Yersinia pestis PY-66]
gi|420764360|ref|ZP_15238096.1| DNA polymerase IV [Yersinia pestis PY-71]
gi|420769578|ref|ZP_15242776.1| DNA polymerase IV [Yersinia pestis PY-72]
gi|420774559|ref|ZP_15247286.1| DNA polymerase IV [Yersinia pestis PY-76]
gi|420780190|ref|ZP_15252244.1| DNA polymerase IV [Yersinia pestis PY-88]
gi|420785777|ref|ZP_15257123.1| DNA polymerase IV [Yersinia pestis PY-89]
gi|420790913|ref|ZP_15261741.1| impB/mucB/samB family protein [Yersinia pestis PY-90]
gi|420796437|ref|ZP_15266706.1| DNA polymerase IV [Yersinia pestis PY-91]
gi|420801503|ref|ZP_15271257.1| DNA polymerase IV [Yersinia pestis PY-92]
gi|420806852|ref|ZP_15276103.1| DNA polymerase IV [Yersinia pestis PY-93]
gi|420812220|ref|ZP_15280924.1| impB/mucB/samB family protein [Yersinia pestis PY-94]
gi|420817701|ref|ZP_15285875.1| DNA polymerase IV [Yersinia pestis PY-95]
gi|420823038|ref|ZP_15290664.1| DNA polymerase IV [Yersinia pestis PY-96]
gi|420828117|ref|ZP_15295230.1| DNA polymerase IV [Yersinia pestis PY-98]
gi|420833803|ref|ZP_15300365.1| DNA polymerase IV [Yersinia pestis PY-99]
gi|420838668|ref|ZP_15304761.1| DNA polymerase IV [Yersinia pestis PY-100]
gi|420843863|ref|ZP_15309477.1| DNA polymerase IV [Yersinia pestis PY-101]
gi|420849525|ref|ZP_15314559.1| DNA polymerase IV [Yersinia pestis PY-102]
gi|420855194|ref|ZP_15319357.1| DNA polymerase IV [Yersinia pestis PY-103]
gi|420860383|ref|ZP_15323930.1| DNA polymerase IV [Yersinia pestis PY-113]
gi|421764729|ref|ZP_16201517.1| DNA polymerase IV [Yersinia pestis INS]
gi|22095621|sp|Q8ZBZ9.1|DPO4_YERPE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123245611|sp|Q1C4D9.1|DPO4_YERPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123246681|sp|Q1CLD4.1|DPO4_YERPN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044621|sp|A4TPK8.1|DPO4_YERPP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|108774677|gb|ABG17196.1| DNA-damage-inducible protein P [Yersinia pestis Nepal516]
gi|108780625|gb|ABG14683.1| DNA-damage-inducible protein P [Yersinia pestis Antiqua]
gi|115348869|emb|CAL21825.1| DNA-damage-inducible protein P [Yersinia pestis CO92]
gi|145211813|gb|ABP41220.1| DNA-damage-inducible protein P [Yersinia pestis Pestoides F]
gi|149291339|gb|EDM41413.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
gi|162354629|gb|ABX88577.1| DNA polymerase IV [Yersinia pestis Angola]
gi|165915986|gb|EDR34593.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
gi|165921503|gb|EDR38700.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
gi|166205683|gb|EDR50163.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
gi|166960554|gb|EDR56575.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167057843|gb|EDR67589.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229681180|gb|EEO77274.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|229687808|gb|EEO79881.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
195]
gi|229695203|gb|EEO85250.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700934|gb|EEO88963.1| DNA polymerase IV [Yersinia pestis Pestoides A]
gi|262366936|gb|ACY63493.1| DNA polymerase IV [Yersinia pestis D182038]
gi|294355407|gb|ADE65748.1| DNA polymerase IV [Yersinia pestis Z176003]
gi|342854060|gb|AEL72613.1| DNA polymerase IV [Yersinia pestis A1122]
gi|391423288|gb|EIQ85787.1| DNA polymerase IV [Yersinia pestis PY-01]
gi|391423501|gb|EIQ85976.1| DNA polymerase IV [Yersinia pestis PY-02]
gi|391423731|gb|EIQ86187.1| DNA polymerase IV [Yersinia pestis PY-03]
gi|391438242|gb|EIQ99019.1| DNA polymerase IV [Yersinia pestis PY-04]
gi|391439370|gb|EIR00033.1| DNA polymerase IV [Yersinia pestis PY-05]
gi|391443104|gb|EIR03452.1| DNA polymerase IV [Yersinia pestis PY-06]
gi|391455219|gb|EIR14358.1| DNA polymerase IV [Yersinia pestis PY-07]
gi|391456075|gb|EIR15135.1| DNA polymerase IV [Yersinia pestis PY-08]
gi|391457889|gb|EIR16794.1| DNA polymerase IV [Yersinia pestis PY-09]
gi|391470945|gb|EIR28549.1| DNA polymerase IV [Yersinia pestis PY-10]
gi|391472365|gb|EIR29832.1| DNA polymerase IV [Yersinia pestis PY-11]
gi|391473326|gb|EIR30714.1| DNA polymerase IV [Yersinia pestis PY-12]
gi|391487070|gb|EIR43046.1| DNA polymerase IV [Yersinia pestis PY-13]
gi|391488589|gb|EIR44416.1| DNA polymerase IV [Yersinia pestis PY-15]
gi|391488735|gb|EIR44547.1| impB/mucB/samB family protein [Yersinia pestis PY-14]
gi|391503029|gb|EIR57266.1| DNA polymerase IV [Yersinia pestis PY-16]
gi|391503200|gb|EIR57414.1| DNA polymerase IV [Yersinia pestis PY-19]
gi|391508302|gb|EIR62055.1| DNA polymerase IV [Yersinia pestis PY-25]
gi|391518979|gb|EIR71651.1| DNA polymerase IV [Yersinia pestis PY-29]
gi|391520513|gb|EIR73061.1| DNA polymerase IV [Yersinia pestis PY-34]
gi|391521422|gb|EIR73888.1| DNA polymerase IV [Yersinia pestis PY-32]
gi|391533412|gb|EIR84686.1| DNA polymerase IV [Yersinia pestis PY-36]
gi|391536535|gb|EIR87511.1| DNA polymerase IV [Yersinia pestis PY-42]
gi|391538959|gb|EIR89716.1| impB/mucB/samB family protein [Yersinia pestis PY-45]
gi|391551942|gb|EIS01407.1| DNA polymerase IV [Yersinia pestis PY-46]
gi|391552172|gb|EIS01621.1| DNA polymerase IV [Yersinia pestis PY-47]
gi|391552555|gb|EIS01970.1| DNA polymerase IV [Yersinia pestis PY-48]
gi|391566782|gb|EIS14728.1| DNA polymerase IV [Yersinia pestis PY-52]
gi|391567935|gb|EIS15735.1| DNA polymerase IV [Yersinia pestis PY-53]
gi|391572454|gb|EIS19684.1| impB/mucB/samB family protein [Yersinia pestis PY-54]
gi|391581260|gb|EIS27162.1| DNA polymerase IV [Yersinia pestis PY-55]
gi|391583349|gb|EIS29015.1| DNA polymerase IV [Yersinia pestis PY-56]
gi|391593926|gb|EIS38164.1| DNA polymerase IV [Yersinia pestis PY-58]
gi|391596894|gb|EIS40770.1| DNA polymerase IV [Yersinia pestis PY-60]
gi|391598059|gb|EIS41825.1| DNA polymerase IV [Yersinia pestis PY-59]
gi|391611336|gb|EIS53525.1| DNA polymerase IV [Yersinia pestis PY-61]
gi|391611821|gb|EIS53957.1| DNA polymerase IV [Yersinia pestis PY-63]
gi|391614611|gb|EIS56458.1| DNA polymerase IV [Yersinia pestis PY-64]
gi|391624536|gb|EIS65159.1| DNA polymerase IV [Yersinia pestis PY-65]
gi|391629003|gb|EIS68989.1| DNA polymerase IV [Yersinia pestis PY-66]
gi|391635197|gb|EIS74386.1| DNA polymerase IV [Yersinia pestis PY-71]
gi|391637196|gb|EIS76143.1| DNA polymerase IV [Yersinia pestis PY-72]
gi|391647229|gb|EIS84881.1| DNA polymerase IV [Yersinia pestis PY-76]
gi|391650790|gb|EIS88039.1| DNA polymerase IV [Yersinia pestis PY-88]
gi|391655172|gb|EIS91939.1| DNA polymerase IV [Yersinia pestis PY-89]
gi|391660127|gb|EIS96316.1| impB/mucB/samB family protein [Yersinia pestis PY-90]
gi|391667690|gb|EIT02990.1| DNA polymerase IV [Yersinia pestis PY-91]
gi|391677177|gb|EIT11506.1| DNA polymerase IV [Yersinia pestis PY-93]
gi|391677928|gb|EIT12194.1| DNA polymerase IV [Yersinia pestis PY-92]
gi|391678432|gb|EIT12645.1| impB/mucB/samB family protein [Yersinia pestis PY-94]
gi|391691130|gb|EIT24081.1| DNA polymerase IV [Yersinia pestis PY-95]
gi|391694090|gb|EIT26785.1| DNA polymerase IV [Yersinia pestis PY-96]
gi|391695768|gb|EIT28314.1| DNA polymerase IV [Yersinia pestis PY-98]
gi|391708019|gb|EIT39312.1| DNA polymerase IV [Yersinia pestis PY-99]
gi|391711355|gb|EIT42327.1| DNA polymerase IV [Yersinia pestis PY-100]
gi|391712250|gb|EIT43147.1| DNA polymerase IV [Yersinia pestis PY-101]
gi|391724090|gb|EIT53702.1| DNA polymerase IV [Yersinia pestis PY-102]
gi|391724833|gb|EIT54368.1| DNA polymerase IV [Yersinia pestis PY-103]
gi|391727480|gb|EIT56691.1| DNA polymerase IV [Yersinia pestis PY-113]
gi|411174280|gb|EKS44313.1| DNA polymerase IV [Yersinia pestis INS]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|336394740|ref|ZP_08576139.1| DNA-damage-inducible protein P [Lactobacillus farciminis KCTC 3681]
Length = 337
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 6/182 (3%)
Query: 57 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 116
+ I ++ +++KET TCS GI++NK LAK+AS KP +T + K L +PI+
Sbjct: 97 IKIANYIQQRIVKETNLTCSVGISYNKFLAKMASDYRKPFGRTIILGKYAKEFLKPIPIE 156
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 176
K +G + L +E+ + T DL K +DK + +G G ++ GI V+
Sbjct: 157 KFNGIGKAMQEKL-HEMDIYTGEDLQKLDQDKFLQRFG-KMGYVIYKRVHGIDDAPVEGH 214
Query: 177 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
KS G +++ R L T + L+ L E +S+ L + K + L L S F
Sbjct: 215 RARKSIGRERTY--NRNLVTEEQIYRELDFLAELVSQDLKKKRQHGKTVV--LKLRNSDF 270
Query: 237 KS 238
++
Sbjct: 271 ET 272
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H + L I +R ++L++T T SAGIA NK LAK+AS KP Q +P
Sbjct: 109 LDVTHNKQNLPYASEIAAAIRAEILRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIPP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQ--NELGVTTVGDLLKFSEDKLQESYGFNTGTWL 161
+ L +LP+ K+ +G K +LQ + LG+ T GDL K +L +G G L
Sbjct: 169 PRIAQFLLTLPLGKIPGVGKK---TLQKMHALGLQTAGDLQKMQRGELVNLFG-RWGYRL 224
Query: 162 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
+++ARGI VQ + + + P L + V+H +L++ L + ++
Sbjct: 225 YDLARGIDNRPVQPQRERLQISTEITLPQDLPLSKI--VRH-----LADLAKDLWAQAQR 277
Query: 222 NKRIAHTLTL 231
+ AHTLTL
Sbjct: 278 KQVQAHTLTL 287
>gi|384415915|ref|YP_005625277.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|320016419|gb|ADV99990.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|258408893|ref|ZP_05681175.1| DNA polymerase IV [Staphylococcus aureus A9763]
gi|257840340|gb|EEV64802.1| DNA polymerase IV [Staphylococcus aureus A9763]
Length = 337
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 105 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 164
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 165 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 222
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 223 RKSVGTERTF 232
>gi|161484857|ref|NP_668289.2| DNA polymerase IV [Yersinia pestis KIM10+]
gi|270489441|ref|ZP_06206515.1| DNA polymerase IV [Yersinia pestis KIM D27]
gi|270337945|gb|EFA48722.1| DNA polymerase IV [Yersinia pestis KIM D27]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|354596399|ref|ZP_09014416.1| DNA polymerase IV [Brenneria sp. EniD312]
gi|353674334|gb|EHD20367.1| DNA polymerase IV [Brenneria sp. EniD312]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 18/236 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
L+ E+R + E T SAG+A K LAK+AS +NKP Q +P + + LP+
Sbjct: 119 ATLMAEEIRQAIAAELNLTASAGVAPIKFLAKVASELNKPNGQFVIPPDRMDAFILQLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G L+ E G+ T D+ +S +L ++G G LW GI V
Sbjct: 179 AKIPGVGKVTAKRLE-EKGLLTCADVRHYSLAELLRNFG-KFGRVLWERCHGIDERSVSP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHAS 234
L KS G K+ + HW CE L E+L +LE + KR+ L +
Sbjct: 237 DRLRKSVGVEKTL--------AQDIHHW--HECEGLIEQLYQELELRLKRVKPDLHIARQ 286
Query: 235 AFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 290
K D R+ P+ ++D L Q RE GV+ G H +
Sbjct: 287 GVKLKFDDFRQTTQEHVWPVLN-----KQDLLTLAQQTWRERRDKRGVRLVGLHVT 337
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 54 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLD 111
A ++V ELR +V T+ T SAGIA N MLAK+ S MNKP Q +PFS V +
Sbjct: 225 AIAAVVVRELRKKVFDCTQLTASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERVMTFIR 284
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 168
LP++K+ +G + +L L V T GDL K+ + T WL + G+
Sbjct: 285 ELPVRKIGGIGKVMEKTLNEALDVQTGGDLFD-QRGKIAHLFSGKTAMWLLQTSLGV 340
>gi|166010983|ref|ZP_02231881.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
gi|167399408|ref|ZP_02304932.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|384123416|ref|YP_005506036.1| DNA polymerase IV [Yersinia pestis D106004]
gi|45435409|gb|AAS60968.1| DNA-damage-inducible protein P [Yersinia pestis biovar Microtus
str. 91001]
gi|165989983|gb|EDR42284.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
gi|167051912|gb|EDR63320.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|262363012|gb|ACY59733.1| DNA polymerase IV [Yersinia pestis D106004]
Length = 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 117 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 176
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 177 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 234
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 235 EREISPDRLRKSVGVEKTL 253
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
IV E++ +VLKET T S GI++NK LAKLAS NKP + V +L L + +
Sbjct: 110 IVEEIKYKVLKETGLTMSRGISYNKFLAKLASDWNKPNGIKIITKEMVPDILLPLSVSSV 169
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L N +G+ T+ +L++ ED L + +G +G ++N RGI V
Sbjct: 170 HGIGKKSSQKLNN-IGIYTIKELMRLPEDFLVDFFG-KSGREIYNRIRGIDNRTVNISSE 227
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G ++F K + +Q +L + EL L S Q K I TL + + F++
Sbjct: 228 RKSIGVERTFTNHTKNKEI--LQEYLYKFSLELELSLKSKEMQAKTI--TLKIKDTNFRT 283
>gi|167771592|ref|ZP_02443645.1| hypothetical protein ANACOL_02964 [Anaerotruncus colihominis DSM
17241]
gi|167666232|gb|EDS10362.1| ImpB/MucB/SamB family protein [Anaerotruncus colihominis DSM 17241]
Length = 415
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 51 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
+L G + T++R ++ +E T S G++ NK+ AKL S +NKP T + + K +
Sbjct: 119 ELFGDGPAVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKPDGMTVIAYDGFKEQV 178
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
LP+K + + G+ T G+TT+G L + L+ +G G LW A G+
Sbjct: 179 WPLPVKTLLYV-GRATTGKLKSYGITTIGALAQAPITFLEHRFG-KIGRMLWMFANGLDT 236
Query: 171 EEVQ---ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 227
V A+ L KS G+ + PR L T ++ L LCE +S RL + K +A
Sbjct: 237 SPVSNIGAKSLIKSIGNSTT--APRDLITDQEIKITLYALCESISARLREHSFRCKTVA- 293
Query: 228 TLTLHASAFKSSDSDSRKKFPS 249
LT+ S+ S + K PS
Sbjct: 294 -LTIRDSSLTSFERQLALKRPS 314
>gi|427736430|ref|YP_007055974.1| nucleotidyltransferase/DNA polymerase [Rivularia sp. PCC 7116]
gi|427371471|gb|AFY55427.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rivularia sp. PCC 7116]
Length = 360
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R ++ +ET+ T SAG++ NK LAK+ASG NKP T + + ++ LPI+K +
Sbjct: 133 IRKEIFQETKLTASAGVSINKFLAKMASGANKPNGMTVILPEQAQEFVEKLPIEKFHGI- 191
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
GK+ S +LG+ +L + + L +G G + +NIAR VQ + KS
Sbjct: 192 GKVTASKMKKLGIHNGANLKELKLEFLVRHFG-KAGNYYYNIARAEDNRAVQPNRIRKSI 250
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
G+ SF + L S+ L Q+ L +R LE+++ T+TL
Sbjct: 251 GAENSF--AKDLSDETSILRELEQIALTLQKR----LEKHQTSGRTITL 293
>gi|398356293|ref|YP_006529620.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|399995501|ref|YP_006575739.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|365182348|emb|CCE99198.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|390131540|gb|AFL54920.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 363
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ + T SAGI++NK LAK+AS +NKP Q + + ++ LPIKK
Sbjct: 130 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLPIKKF 189
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + LG+ T DL + S + L E +G +G + + IARGI E++ +
Sbjct: 190 HGVGPATAEKM-HRLGIETGADLKEKSFEFLVEHFG-KSGPYFYGIARGIDNREIKPNRV 247
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 248 RKSVGAEDTF 257
>gi|386309576|ref|YP_006005632.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|418241392|ref|ZP_12867921.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433550652|ref|ZP_20506696.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
gi|318604550|emb|CBY26048.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|351779193|gb|EHB21311.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431789787|emb|CCO69736.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R ++ E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQAIVIELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|218961283|ref|YP_001741058.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans]
gi|167729940|emb|CAO80852.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 353
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
V I ++ ++L++T TCSAG+++NK LAK+ S +NKP T +P +L +LPI
Sbjct: 119 AVKIAKLIKAEILEKTGLTCSAGVSYNKFLAKIGSDLNKPDGLTYIPPEKASEILFALPI 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K +G L+ + G+ DL K+ L G G + + + RGI EV
Sbjct: 179 EKFYGIGKVTSAKLKKK-GINNGADLYKYELKDLIRLLG-KAGHFYYYVVRGIDKREVIT 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
PKS +F + + + L QL E LS RL
Sbjct: 237 EFEPKSLSCETTF--YEDIDNLDYLLIILQQLAERLSNRL 274
>gi|261332129|emb|CBH15122.1| DNA polymerase eta, putative [Trypanosoma brucei gambiense DAL972]
Length = 525
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LLA +V +R ++ E + CSAGIAHNK+LAK S +KP QQT + V ++
Sbjct: 200 LLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAKSISARHKPNQQTLLFPDCVASVMW 259
Query: 112 SLPIKKMKQLGGKLGTSLQNELG---------VTTVGDLLKFSEDKLQESYGFNTGTWLW 162
LP K ++ GGK G ++ G + ++ + KF E Y +
Sbjct: 260 DLPFKSIRGFGGKFGEVVRLACGGKETCREAWLHSLCAMSKFFESVGDAEYAYRR----- 314
Query: 163 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 214
RG +++ R + KS + K+F P + T VQ W+ L ELS R
Sbjct: 315 --LRGYDEGKIRERSISKSLMASKAFSPPSS--TANGVQKWVTVLSGELSAR 362
>gi|257434028|ref|ZP_05610379.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257280954|gb|EEV11098.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
Length = 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 242 RKSVGTEHTF 251
>gi|417331453|ref|ZP_12115694.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353585430|gb|EHC45268.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 298
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 125 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 185 HGVGPATARRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRP 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
KS G +F + L+T A + L +L ++
Sbjct: 243 RKSLGKEVTF--EQDLRTPAELHAALRELASKV 273
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K
Sbjct: 123 LIAKEIRARIKEEIGLNASAGISYNKFLAKTASDINKPNGQAVILPQDAESFLEKLPIEK 182
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ + LG+ DL +FS L + +G +G +NI RGI EVQ
Sbjct: 183 FFGI-GKVTSEKMKSLGIHNGYDLKQFSLQFLTKRFG-KSGLHFYNIVRGIHLSEVQPNR 240
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS + +F + S WL L E+ E L +E++ T+TL
Sbjct: 241 IRKSLSAENTFS-----TDLKSEVEWLAALS-EIFEELKRRVEKSGIKGRTVTL 288
>gi|21957698|gb|AAM84540.1|AE013699_2 damage-inducible protein P; putative tRNA synthetase [Yersinia
pestis KIM10+]
Length = 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 117 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 176
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 177 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 234
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 235 EREISPDRLRKSVGVEKTL 253
>gi|320547508|ref|ZP_08041794.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
gi|320447853|gb|EFW88610.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
Length = 366
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 8/193 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I ++ + +E TCSAG+++NK LAKLAS +KP T V + L
Sbjct: 130 IKSAIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFDKPKGLTLVMPEDAEDFLKE 189
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K +G K L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 190 LPVEKFHGVGKKSVEKL-HQLGVYTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSP 247
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ + KS GS +++ + L A ++ +++ + R+ + L +N +I + L
Sbjct: 248 VKPNRIRKSIGSERTY--GKLLYDDADIKSEISK----NARRVVNSLARNNKIGRIVVLK 301
Query: 233 ASAFKSSDSDSRK 245
S RK
Sbjct: 302 VRYADFSTLTKRK 314
>gi|71746744|ref|XP_822427.1| DNA polymerase eta [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832095|gb|EAN77599.1| DNA polymerase eta, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 525
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LLA +V +R ++ E + CSAGIAHNK+LAK S +KP QQT + V ++
Sbjct: 200 LLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAKSISARHKPNQQTLLFPDCVASVMW 259
Query: 112 SLPIKKMKQLGGKLGTSLQNELG---------VTTVGDLLKFSEDKLQESYGFNTGTWLW 162
LP K ++ GGK G ++ G + ++ + KF E Y +
Sbjct: 260 DLPFKSIRGFGGKFGEVVRLACGGKETCREAWLHSLCAMSKFFESVGDAEYAYRR----- 314
Query: 163 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 214
RG +++ R + KS + K+F P + T VQ W+ L ELS R
Sbjct: 315 --LRGYDEGKIRERSISKSLMASKAFSPPSS--TANGVQKWVTVLSGELSAR 362
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I ++R ++ + T T SAGI+ NK +AK+AS NKP Q T+ V L+ L I+K
Sbjct: 125 VIAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITPEEVIPFLEELEIRK 184
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G + + G+ T L + S + LQE +G +G +NI RGI V+
Sbjct: 185 FHGIGKVTAEKMYLQ-GIFTGAHLKERSLEFLQEHFG-KSGAHYYNIVRGIHHSPVKPDR 242
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS G+ ++F + + ++ L Q+ EE+ +RL + K + TL + S FK
Sbjct: 243 IRKSLGAERTF--SENISSEIFMKERLTQIAEEIEKRLAKNDVAGKTV--TLKIKYSDFK 298
Query: 238 S 238
+
Sbjct: 299 T 299
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 126 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAF 185
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 186 HGVGPATARRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRP 243
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
KS G +F + L+T A + L +L ++
Sbjct: 244 RKSLGKEVTF--EQDLRTPAELHAALRELASKV 274
>gi|289806282|ref|ZP_06536911.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 288
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ +ET T SAGI+ NK LAK+AS NKP Q T+ + + ++ LPI+K
Sbjct: 123 IAREIRGRIYEETGLTASAGISVNKFLAKVASDYNKPNGQKTIHPTQILEFMEELPIEKF 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK+ + +E+ + DL S ++L +G +G + +N+ RGI EV+ +
Sbjct: 183 YGI-GKVTANKMHEMHIFKGADLKNKSLEELIRLFG-KSGNYYYNVVRGIHNSEVKPHRI 240
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
KS ++F L V L + EEL ERL
Sbjct: 241 QKSVAVEETFWD--NLLDEEQVFAQLKTISEELEERLL 276
>gi|255079098|ref|XP_002503129.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
gi|226518395|gb|ACO64387.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
Length = 652
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 49 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 108
R++ L G I E R V T SAGIAHNKMLAKL SG++KP QTT+P
Sbjct: 241 RERRLRVGAAIAAEARDAVRSATGLRMSAGIAHNKMLAKLVSGLHKPDDQTTLPAGVAAK 300
Query: 109 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 168
L+ LP++ + +G +L + GV T DL + + ++ E G G + + A G+
Sbjct: 301 LVSPLPVRALPGVGHGAERTLVHR-GVRTAADLRRVTRSEVCEWLGPRVGRKVHDAAWGV 359
Query: 169 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
EEV + P SF R+ T +SV L + +L R+ + E
Sbjct: 360 DREEVAPKPAPNFVTCEDSF---RSCTTWSSVDAVLAVIAPDLLARMDEEYE 408
>gi|383188934|ref|YP_005199062.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371587192|gb|AEX50922.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 364
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 18/234 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K
Sbjct: 121 LIAAEIRQAIFDEIALTASAGIAPIKFLAKIASDLNKPNGQFVITPEKVGAFLQDLPLSK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G LQ E G+ T GD+ ++ KL + +G G LW +GI E+ +
Sbjct: 181 IPGVGKVTAQRLQ-EQGLFTCGDVQRYDLAKLLKRFG-KFGRVLWERCQGIDEREISSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTLTLHASAF 236
L KS G ++ + W + C L ERL +L R++ L +
Sbjct: 239 LRKSVGVERTL--------AEDIHGW--EECVALIERLYPELHTRLSRVSPDLRIARQGV 288
Query: 237 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 290
K D ++ P+ +ED + + + G GV+ G H +
Sbjct: 289 KLKFHDFQQTTQEHVWPVLN-----KEDLLKVAREAWEKRRGGRGVRLVGLHVT 337
>gi|415836107|ref|ZP_11518536.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|417284255|ref|ZP_12071550.1| DNA polymerase IV [Escherichia coli 3003]
gi|425276150|ref|ZP_18667497.1| DNA polymerase IV [Escherichia coli ARS4.2123]
gi|323191391|gb|EFZ76653.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|386242464|gb|EII84199.1| DNA polymerase IV [Escherichia coli 3003]
gi|408207435|gb|EKI32179.1| DNA polymerase IV [Escherichia coli ARS4.2123]
Length = 351
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +L + K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLSLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|195572629|ref|XP_002104298.1| GD18521 [Drosophila simulans]
gi|194200225|gb|EDX13801.1| GD18521 [Drosophila simulans]
Length = 712
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R LA G I E+R ++ TC AGIA+NK+LAKL NKP QQT +
Sbjct: 130 CDCGCAQR---LAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSNKPNQQTVL 186
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ + + L +K++ +G K L E G+++V L + D +++ +GF T T
Sbjct: 187 VSTYAEQFMRELGDLKRITGIGQK-TQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATR 245
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L ++A G V+ PK+ G + P +++T V+ L + L E++ D
Sbjct: 246 LRDLAFGRDTSSVRPSGKPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGR 302
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 262
I L S KSS ++++ F + CP G +K+Q
Sbjct: 303 VPIAIKVVLRKFDSQKKSSHRETKQANILPSLFKTSMCPGETGVSKVQ 350
>gi|190345515|gb|EDK37413.2| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 7/194 (3%)
Query: 46 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
+D D + G ++ ++R + E +T S GIA NK LAKLA+G NKP QT + +S
Sbjct: 238 SDWDDICVLIGAQVLYKIRKLIYDELSYTTSGGIARNKFLAKLAAGFNKPDNQTIIRSAS 297
Query: 106 VKGLLDSLPIKKMKQLGGKLGTSLQNEL----GVTTVGDLLK-FSEDKLQESYGFNT--G 158
+ L + + +GGK G ++ GV + L + ++ +Q+ Y +
Sbjct: 298 IPNFLTNFQFNDVSGMGGKTGDTVLARFDTPPGVNSFTHLRENYTLQDIQKEYPQDPQFA 357
Query: 159 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
+++I RG + ++ R KS S K+F R +KT+ + WL +L R
Sbjct: 358 QKIYDIVRGDDKQPLRLRTDVKSMMSRKNFIPQRPVKTLFDIFSWLKVYAGDLHNRFIDL 417
Query: 219 LEQNKRIAHTLTLH 232
++N ++ + H
Sbjct: 418 DDENMNLSMSSVSH 431
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 51 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
K +A I E+R ++ + T SAGI++NK LAK+AS +NKP Q + ++ +
Sbjct: 121 KGMAIATEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPNNGPSFV 180
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
++LP+KK +G ++ +LG+ T DL S LQE +G +G + + +ARGI
Sbjct: 181 EALPVKKFHGVGPATAERMR-KLGIETGLDLKSKSLIFLQEHFG-KSGPYFYGVARGIDE 238
Query: 171 EEVQARLLPKSHGSGKSF 188
V+A + KS G+ +F
Sbjct: 239 RRVRADRIRKSVGAEDTF 256
>gi|387126480|ref|YP_006295085.1| DNA polymerase IV [Methylophaga sp. JAM1]
gi|386273542|gb|AFI83440.1| DNA polymerase IV [Methylophaga sp. JAM1]
Length = 362
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D + + LI ++ ++L ET T SAG+++NK LAK+AS M+KP +
Sbjct: 110 LDVTYTESFNGSATLIAKAIKSEILAETGLTASAGVSYNKFLAKIASDMDKPDGLYLIRP 169
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ ++ LPI K +G ++N LGV T DL + S +L E +G +G + +N
Sbjct: 170 EQGQEFVNKLPIGKFHGIGPATEIKMKN-LGVHTGHDLRQKSLTELSERFG-KSGQYYYN 227
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
IAR I V+++ + KS G +F + + S+ LN + +++E++ L ++
Sbjct: 228 IARAIDDRPVRSQRIRKSLGKETTFA-----EDILSIPD-LNNILLDVAEQVLGSLSKHN 281
Query: 224 RIAHTLTL 231
T+T+
Sbjct: 282 MQGRTVTV 289
>gi|195390592|ref|XP_002053952.1| GJ24165 [Drosophila virilis]
gi|194152038|gb|EDW67472.1| GJ24165 [Drosophila virilis]
Length = 749
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 22/232 (9%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R LA G I E+R ++ TC AGIA+NK+LAKL +KP QQT +
Sbjct: 153 CSCGCAQR---LAIGTRIAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVL 209
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ + + L + + +G K T L E GV+TV L + + +++ +GF T T
Sbjct: 210 VSTYAEQFMRELNDLHSVTGIGQKTQTLLL-EAGVSTVEQLQQCDMEFMRKKFGFETATK 268
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L ++A G G V+A G K+ A KT+ SV + L +RL +
Sbjct: 269 LRDLALGRDGSSVRA------TGKPKTISVEDACKTI-SVHTDVTDKFRMLLKRLMEQVA 321
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKK----------FPSKSCPLRYGTAKIQ 262
++ RI + + F S S ++ F + CP G K+Q
Sbjct: 322 EDGRIPIAIKVVLRKFDSQKKTSHRETKQANILPSLFKTSVCPGETGVCKVQ 373
>gi|365853728|ref|ZP_09393993.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
gi|363711886|gb|EHL95592.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
Length = 366
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ ++LK+T+ TCS G+++NK LAK AS KP T + L LPI+K + +G
Sbjct: 133 IQAEILKQTKLTCSVGVSYNKFLAKEASDYAKPFGLTVIEPKDAIEFLKRLPIEKFRGVG 192
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
K + ++LG+ DL+++S+ L + +G G L+ ARGI V+ + KS
Sbjct: 193 KKTVPKM-HDLGINDGADLIQWSQMDLIKHFG-KFGYVLYERARGIDKRPVEYARVRKSV 250
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
G ++F GP Q ++ + ++E + ++++Q K+ TL L
Sbjct: 251 GKERTF-GPE-----LENQSQVDDQLKHIAEMVAAEMQQKKKHGKTLVL 293
>gi|146419760|ref|XP_001485840.1| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 7/194 (3%)
Query: 46 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
+D D + G ++ ++R + E +T S GIA NK LAKLA+G NKP QT + +
Sbjct: 238 SDWDDICVLIGAQVLYKIRKLIYDELSYTTSGGIARNKFLAKLAAGFNKPDNQTIIRLAL 297
Query: 106 VKGLLDSLPIKKMKQLGGKLGTSLQNEL----GVTTVGDLLK-FSEDKLQESYGFNT--G 158
+ L + + +GGK G ++ GV + L + ++ +Q+ Y +
Sbjct: 298 IPNFLTNFQFNDVSGMGGKTGDTVLARFDTPPGVNSFTHLRENYTLQDIQKEYPQDPQFA 357
Query: 159 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
+++I RG + ++ R KS S K+F R +KT+ + WL +L R
Sbjct: 358 QKIYDIVRGDDKQPLRLRTDVKSMMSRKNFIPQRPVKTLFDIFSWLKVYAGDLHNRFIDL 417
Query: 219 LEQNKRIAHTLTLH 232
++N + L H
Sbjct: 418 DDENMNLLMLLVSH 431
>gi|58268086|ref|XP_571199.1| eta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57227433|gb|AAW43892.1| eta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 690
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 83 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 142
++++ L S KP QT + ++V L+ ++ LGGKLG ++ + G TVGD+L
Sbjct: 259 ELMSNLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQQFGAKTVGDML 318
Query: 143 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 202
S D++Q +G W++NI RGI EV R+ KS + KS A+ +
Sbjct: 319 TVSLDEMQRKFG-EESIWVYNILRGIDHSEVTDRVATKSMLASKSIRP--AVTSPQQGHQ 375
Query: 203 WLNQLCEELSERL 215
WL+ L EL+ RL
Sbjct: 376 WLSILAGELNVRL 388
>gi|291399949|ref|XP_002716300.1| PREDICTED: DNA polymerase iota, partial [Oryctolagus cuniculus]
Length = 709
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 195 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHS 254
Query: 113 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L IK+M +G K L+ LG+T+V DL FS L++ G + + ++ G
Sbjct: 255 LNHIKEMPGVGYKTTKRLE-ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNS 313
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S SF + + V+ + +L L R+C Q+ R HT+ L
Sbjct: 314 PVIPSGPPQSFSEEDSF---KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRL 366
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
F S R+ S+ CP+
Sbjct: 367 IIRRFSSGKLCGRE---SRQCPI 386
>gi|291394393|ref|XP_002713588.1| PREDICTED: DNA polymerase iota [Oryctolagus cuniculus]
Length = 733
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 195 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHS 254
Query: 113 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L IK+M +G K L+ LG+T+V DL FS L++ G + + ++ G
Sbjct: 255 LNHIKEMPGVGYKTTKRLE-ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNS 313
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S SF + + V+ + +L L R+C Q+ R HT+ L
Sbjct: 314 PVIPSGPPQSFSEEDSF---KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRL 366
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
F S R+ S+ CP+
Sbjct: 367 IIRRFSSGKLCGRE---SRQCPI 386
>gi|168206793|ref|ZP_02632798.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
gi|170661821|gb|EDT14504.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
Length = 359
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 6/180 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + +LPI K
Sbjct: 124 LMALEIKARIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNLPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS GK ++ + + L+++ E ++E LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIEEMIEILDKIAERVNESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|338175642|ref|YP_004652452.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
gi|336480000|emb|CCB86598.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
Length = 359
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+L+ VLK T TCS GIA NK++AK+AS KP +P L +LPI + +
Sbjct: 128 KLKEAVLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFLATLPIGAIPGI 187
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA-RLLPK 180
G K SL ++ + T+ DL K D L E YG G + + A GI V PK
Sbjct: 188 GSKTEKSLIDD-RLYTIADLQKIDLDTLIERYG-TRGYYFYLAAHGIDKRPVDGEEYFPK 245
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKS 238
S G+ +F A T+ L + EL ++ C L+ Q + +L L S F++
Sbjct: 246 SIGAETTFEADLADSTI------LLETLSELVQKACKRLKKYQTRTRGFSLKLRYSDFRT 299
>gi|321259275|ref|XP_003194358.1| eta DNA polymerase [Cryptococcus gattii WM276]
gi|317460829|gb|ADV22571.1| eta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 689
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 83 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 142
++++ L S KP QT + ++V L+ ++ LGGKLG ++ E TVGD+L
Sbjct: 259 ELMSNLCSAWRKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQEFDAKTVGDML 318
Query: 143 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 202
S D +Q+ +G W++NI RGI EV R+ KS + KS A+ + H
Sbjct: 319 TVSLDAMQKKFG-EESIWVYNILRGIDHSEVTERVSTKSMLASKSIRP--AVTSPQQGYH 375
Query: 203 WLNQLCEELSERL 215
WL+ L EL RL
Sbjct: 376 WLSILAGELKVRL 388
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ + T T SAG+++NK LAKLAS KP +P + + LPI +
Sbjct: 127 IAQEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGPEFVHGLPIGRF 186
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +++ G+ T DL + + + L +G +GT+ WNIARGI EV+ +
Sbjct: 187 HGIGPATAARMESH-GILTGADLARQTLEFLTARFG-KSGTYYWNIARGIDTREVKPNRI 244
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G+ ++ L+ + + L E L++++ R+ T+TL K
Sbjct: 245 RKSIGAENTY--FEDLRDLPAAHEAL----EVLADKVWRHATNAGRVGRTVTL-----KV 293
Query: 239 SDSDSRKKFPSKSCP 253
D R+ ++S P
Sbjct: 294 KYGDFRQITRARSLP 308
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + + E+R + ET T SAGIA NK LAK+AS KP Q +P
Sbjct: 108 LDVTHNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V L++LP+ K+ + GK+ LG+ T GDL +F +L +G G L++
Sbjct: 168 HKVMAFLETLPLGKIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYD 225
Query: 164 IARGISGEEVQA 175
+ARG V+A
Sbjct: 226 LARGTDERPVKA 237
>gi|204926676|ref|ZP_03217878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|452121423|ref|YP_007471671.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|204323341|gb|EDZ08536.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|451910427|gb|AGF82233.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 351
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|336066429|ref|YP_004561287.1| DNA polymerase IV [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334296375|dbj|BAK32246.1| DNA polymerase IV [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 406
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I TE+R ++ E T S G++ NK+ AKL S +NKP T + S VK ++ LP++ +
Sbjct: 125 IATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDGLTILMESHVKSMIWPLPVQDL 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G SL N++G+ T+GDL E++L G G+ L + A G EV
Sbjct: 185 LYVGPSTQKSL-NKMGIRTIGDLACADENQLHTHIG-KMGSLLKSFANGDDTSEVNPHTD 242
Query: 179 P-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
P KS G+G + P+ L ++ V+ L L E +S R C ++E+
Sbjct: 243 PAKSVGNGMT--TPQDLVSIEEVRRVLFVLAESVSSR-CRNIEK 283
>gi|323342769|ref|ZP_08083001.1| DNA polymerase IV [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463881|gb|EFY09075.1| DNA polymerase IV [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 406
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I TE+R ++ E T S G++ NK+ AKL S +NKP T + S VK ++ LP++ +
Sbjct: 125 IATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDGLTILMESHVKSMIWPLPVQDL 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G SL N++G+ T+GDL E++L G G+ L + A G EV
Sbjct: 185 LYVGPSTQKSL-NKMGIRTIGDLACADENQLHTHIG-KMGSLLKSFANGDDTSEVNPHTD 242
Query: 179 P-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 221
P KS G+G + P+ L ++ V+ L L E +S R C ++E+
Sbjct: 243 PAKSVGNGMT--TPQDLVSIEEVRRVLFVLAESVSSR-CRNIEK 283
>gi|332798579|ref|YP_004460078.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|438001559|ref|YP_007271302.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|332696314|gb|AEE90771.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|432178353|emb|CCP25326.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
Length = 396
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D ++L V I +++ + KE + CS G++ NK+LAK+AS M KP T
Sbjct: 107 WL---DVTGCERLFGDSVAIARKIQAAIAKELDLLCSIGVSCNKLLAKMASDMKKPNAIT 163
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ V LL LP+ ++ +G ++ L+ + + T+GDL + ++ L++++G N G+
Sbjct: 164 VLTTEDVPKLLWPLPVNELFGVGRRMAEKLK-RMNIKTIGDLAEAPQEFLEKAFGLN-GS 221
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
+L A GI V + + G S P+ + + + L L E++ R+ +
Sbjct: 222 YLHLWANGIDDSAVNPHSMDDAKSMGHSITLPKDITSFDDAEIVLLFLSEQVGRRVRREN 281
Query: 220 EQNKRIAHTLTLHASAFKS 238
+ + T+TL ++F +
Sbjct: 282 YMGRTV--TVTLRYASFDT 298
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIKKMK 119
ELR ++ T+ T SAGIA N MLAK+ S MNKP Q +PF+ V L LP++K+
Sbjct: 236 ELRQKIFDCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLTFLCDLPVRKIG 295
Query: 120 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI-SGEEVQARLL 178
+G L LGV T G+L K+ + T WL + G+ E Q R
Sbjct: 296 GIGKVTEKILNEALGVHTGGELFN-QRGKIFHLFTEKTAVWLLQTSLGVRERREKQER-- 352
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KSF R ++++ + L C E+ + L DLE+ + A +T +K
Sbjct: 353 -------KSFSRERTFRSLSDPKE-LEAKCLEVCKMLAKDLEKANKAAKNVTF---VYKD 401
Query: 239 SD 240
+D
Sbjct: 402 TD 403
>gi|417450345|ref|ZP_12162896.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353637039|gb|EHC82955.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
Length = 343
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 98 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 154
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 155 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 212
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 213 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 262
Query: 220 EQNKRIA 226
E+ I
Sbjct: 263 ERRLAIV 269
>gi|421113191|ref|ZP_15573639.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
gi|410801366|gb|EKS07536.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
Length = 360
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPVGSFHGV-GKVTAQKMKELGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|161504583|ref|YP_001571695.1| DNA polymerase IV [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|189027678|sp|A9MNS1.1|DPO4_SALAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|160865930|gb|ABX22553.1| hypothetical protein SARI_02697 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 351
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDTPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ + GK+ + +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGV-GKVSAAKLESMGLITCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + ERL +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIERLYPEL 270
Query: 220 EQN 222
E+
Sbjct: 271 ERR 273
>gi|16759308|ref|NP_454925.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16763696|ref|NP_459311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29142919|ref|NP_806261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|161615517|ref|YP_001589482.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167553101|ref|ZP_02346851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167993331|ref|ZP_02574426.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|197263932|ref|ZP_03164006.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|213162131|ref|ZP_03347841.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213425140|ref|ZP_03357890.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213649644|ref|ZP_03379697.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|374979809|ref|ZP_09721141.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378443760|ref|YP_005231392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378448629|ref|YP_005235988.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698281|ref|YP_005180238.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378960717|ref|YP_005218203.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|378982854|ref|YP_005246009.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378987715|ref|YP_005250879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379699532|ref|YP_005241260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383495126|ref|YP_005395815.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|416424584|ref|ZP_11691765.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416430856|ref|ZP_11695200.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416439979|ref|ZP_11700560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416444663|ref|ZP_11703896.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416453868|ref|ZP_11709942.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416458465|ref|ZP_11712984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416464995|ref|ZP_11716575.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416477004|ref|ZP_11721348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416484247|ref|ZP_11724043.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416501678|ref|ZP_11732268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416542219|ref|ZP_11751389.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416576567|ref|ZP_11769149.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416583841|ref|ZP_11773597.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416595190|ref|ZP_11781004.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416596485|ref|ZP_11781377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416605634|ref|ZP_11787066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416610348|ref|ZP_11790020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416620916|ref|ZP_11796019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416632850|ref|ZP_11801564.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416639881|ref|ZP_11804795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416648380|ref|ZP_11809025.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416661634|ref|ZP_11815626.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416671044|ref|ZP_11820533.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416673706|ref|ZP_11821029.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416697864|ref|ZP_11828234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416706698|ref|ZP_11831887.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416713112|ref|ZP_11836754.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416719557|ref|ZP_11841413.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416723694|ref|ZP_11844360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416734275|ref|ZP_11850930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416740195|ref|ZP_11854283.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416745392|ref|ZP_11857324.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416759363|ref|ZP_11864224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416764507|ref|ZP_11868111.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416766916|ref|ZP_11869532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418485151|ref|ZP_13054135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418490188|ref|ZP_13056740.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418493277|ref|ZP_13059745.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418497978|ref|ZP_13064393.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418504273|ref|ZP_13070631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418508095|ref|ZP_13074403.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418514207|ref|ZP_13080418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|418525494|ref|ZP_13091474.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|421884459|ref|ZP_16315674.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422024443|ref|ZP_16370923.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422029466|ref|ZP_16375725.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427545521|ref|ZP_18926234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427561638|ref|ZP_18930997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427600223|ref|ZP_18940314.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427602709|ref|ZP_18940599.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427627117|ref|ZP_18945508.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427650396|ref|ZP_18950263.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427659669|ref|ZP_18955216.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427664787|ref|ZP_18959964.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427695319|ref|ZP_18964870.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|437839681|ref|ZP_20846302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|54036996|sp|P63990.1|DPO4_SALTI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040957|sp|P63989.1|DPO4_SALTY RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027679|sp|A9MY13.1|DPO4_SALPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|25300621|pir||AG0542 hypothetical protein DinP (DNA damage-inducible protein) STY0358
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16418815|gb|AAL19270.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16501599|emb|CAD08783.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29138551|gb|AAO70121.1| hypothetical protein DinP [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161364881|gb|ABX68649.1| hypothetical protein SPAB_03289 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197242187|gb|EDY24807.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|205322378|gb|EDZ10217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205328613|gb|EDZ15377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261245539|emb|CBG23333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267992007|gb|ACY86892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156929|emb|CBW16410.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312911282|dbj|BAJ35256.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224974|gb|EFX50035.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322614606|gb|EFY11535.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620125|gb|EFY16997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623419|gb|EFY20258.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629283|gb|EFY26062.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632003|gb|EFY28757.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637259|gb|EFY33961.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642456|gb|EFY39058.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322646290|gb|EFY42804.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652441|gb|EFY48795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653397|gb|EFY49730.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660455|gb|EFY56691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322664607|gb|EFY60800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669340|gb|EFY65490.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670886|gb|EFY67019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678875|gb|EFY74930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681904|gb|EFY77929.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322688030|gb|EFY83996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323128631|gb|ADX16061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|323194385|gb|EFZ79580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197800|gb|EFZ82932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203404|gb|EFZ88429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323210380|gb|EFZ95272.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323214622|gb|EFZ99373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223178|gb|EGA07521.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323224851|gb|EGA09114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230055|gb|EGA14175.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233793|gb|EGA17882.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238513|gb|EGA22571.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244201|gb|EGA28210.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246361|gb|EGA30344.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251987|gb|EGA35850.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257984|gb|EGA41663.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259919|gb|EGA43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265067|gb|EGA48566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272630|gb|EGA56037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|332987262|gb|AEF06245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|366056129|gb|EHN20455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366065452|gb|EHN29642.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366067037|gb|EHN31193.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366071115|gb|EHN35215.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366073755|gb|EHN37819.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366080027|gb|EHN44008.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366080401|gb|EHN44373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366829374|gb|EHN56250.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372206263|gb|EHP19767.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|374354589|gb|AEZ46350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|379986173|emb|CCF87947.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|380461947|gb|AFD57350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|414023614|gb|EKT07037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414023926|gb|EKT07336.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414025152|gb|EKT08487.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414025463|gb|EKT08787.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414037582|gb|EKT20346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414042252|gb|EKT24790.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414051986|gb|EKT34061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414053392|gb|EKT35392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414057905|gb|EKT39634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414061945|gb|EKT43317.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414067531|gb|EKT47871.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|435297410|gb|ELO73693.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 351
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|194449490|ref|YP_002044297.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|386590192|ref|YP_006086592.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|419727415|ref|ZP_14254383.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419733717|ref|ZP_14260612.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419739357|ref|ZP_14266105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419745492|ref|ZP_14272124.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419750239|ref|ZP_14276704.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421572746|ref|ZP_16018392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421577654|ref|ZP_16023242.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421582244|ref|ZP_16027785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421584356|ref|ZP_16029864.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|194407794|gb|ACF68013.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|381298604|gb|EIC39680.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381298904|gb|EIC39978.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381300997|gb|EIC42053.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381305571|gb|EIC46481.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381307432|gb|EIC48288.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383797236|gb|AFH44318.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|402515681|gb|EJW23095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402516242|gb|EJW23655.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402516572|gb|EJW23983.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402530874|gb|EJW38087.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
Length = 351
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-IGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|417388496|ref|ZP_12152607.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353625495|gb|EHC74281.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 306
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|168240052|ref|ZP_02664984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340115|gb|EDZ26879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
Length = 351
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 108/252 (42%), Gaps = 21/252 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-IGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIAHT-LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 278
E+ I L + K +D ++ PL +ED + E G
Sbjct: 271 ERRLAIVKPDLLIARQGVKLKFNDFQQTTQEHVWPLLN-----KEDLITTARKTWDERRG 325
Query: 279 SFGVKTQGSHYS 290
GV+ G H +
Sbjct: 326 ERGVRLVGLHVT 337
>gi|417324194|ref|ZP_12110519.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353579640|gb|EHC41127.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
Length = 297
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|378827935|ref|YP_005190667.1| DNA polymerase IV [Sinorhizobium fredii HH103]
gi|365180987|emb|CCE97842.1| DNA polymerase IV [Sinorhizobium fredii HH103]
Length = 371
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ + T SAGI++NK LAK+AS +NKP Q + + + ++++P+KK
Sbjct: 138 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGQAFVEAVPVKKF 197
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + LG+ T DL +++ L E +G +G + + IARGI EV+ +
Sbjct: 198 HGVGPATAEKM-HRLGIETGADLKGKTQEFLVEHFG-KSGPYFYGIARGIDNREVKPDRV 255
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 256 RKSVGAEDTF 265
>gi|261364541|ref|ZP_05977424.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
gi|288567106|gb|EFC88666.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
Length = 352
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + + TE+R + E T SAGIA NK LAK+AS KP Q +P
Sbjct: 108 LDVTHNFKNIPYASEVATEIRAAIFAEIGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ L++LP+ K+ + GK+ LG+ T GDL +F +L +G G L++
Sbjct: 168 HKIMAFLETLPLGKIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYD 225
Query: 164 IARGISGEEVQA 175
+ARG V+A
Sbjct: 226 LARGTDERPVKA 237
>gi|418791236|ref|ZP_13346999.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418793736|ref|ZP_13349462.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418799685|ref|ZP_13355351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418869364|ref|ZP_13423800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|392755325|gb|EJA12235.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392763416|gb|EJA20223.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392764003|gb|EJA20809.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392836512|gb|EJA92094.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
Length = 351
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|168232268|ref|ZP_02657326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168238581|ref|ZP_02663639.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194468929|ref|ZP_03074913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194735550|ref|YP_002113339.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197250353|ref|YP_002145295.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|375000050|ref|ZP_09724390.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|416526532|ref|ZP_11742437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416536260|ref|ZP_11748327.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416552950|ref|ZP_11757412.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|440770406|ref|ZP_20949356.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440771964|ref|ZP_20950874.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|194455293|gb|EDX44132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194711052|gb|ACF90273.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197214056|gb|ACH51453.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197288572|gb|EDY27949.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|205333456|gb|EDZ20220.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|353074738|gb|EHB40498.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|363557584|gb|EHL41789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363563486|gb|EHL47560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363565366|gb|EHL49402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|436411550|gb|ELP09499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|436420192|gb|ELP18060.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
Length = 351
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|300788116|ref|YP_003768407.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|384151547|ref|YP_005534363.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|399539999|ref|YP_006552661.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|299797630|gb|ADJ48005.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|340529701|gb|AEK44906.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|398320769|gb|AFO79716.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length = 404
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
++R +V E TCS G+A K +AKLASGM KP VP + L LP+ +
Sbjct: 140 AQIRSRVAAEHGITCSVGVAKVKFVAKLASGMAKPDGMVVVPAAETLAFLHPLPVSALWG 199
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
+G + L+ LG+ T+ D+ F ++L++S G G L+ +A G+ V A K
Sbjct: 200 VGARTEEHLRR-LGLATIADVAAFPPERLKKSLGTAAGEHLYRLAHGVDERSVVAESAEK 258
Query: 181 SHGSGKSF 188
S G+ +F
Sbjct: 259 SIGAEHTF 266
>gi|156041128|ref|XP_001587550.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980]
gi|154695926|gb|EDN95664.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 465
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G IV LR ++ + +TCSAGIA NK LAKL +G KP QQT + +V L +
Sbjct: 232 LNIGAQIVRNLRKEIFESLHYTCSAGIAQNKALAKLGAGFKKPDQQTVIRARAVPFFLST 291
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ ++ L G LG + G ++ DLL + ++ + F T ++
Sbjct: 292 CKMTSIRGLAGVLGVKAKEAFGSNSIPDLLAIPQKEIVAALDFRTASY 339
>gi|20806775|ref|NP_621946.1| DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|254478433|ref|ZP_05091810.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
gi|22095608|sp|P58965.1|DPO4_THETN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|20515235|gb|AAM23550.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacter tengcongensis MB4]
gi|214035604|gb|EEB76301.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
Length = 384
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 19/255 (7%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E++ +V T T S GI++NK LAKLAS NKP + V +L LP+ K+
Sbjct: 119 IALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKV 178
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L++ +G+ TV DLLK ++ L E +G TG ++N RGI V+
Sbjct: 179 HGIGEKSAEKLRS-IGIETVEDLLKLPQENLIELFG-KTGVEIYNRIRGIDERPVETMRE 236
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G K+ L+ + L Q +E SE + +L + + T+T+ K+
Sbjct: 237 IKSIGKEKT------LEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVK---IKT 287
Query: 239 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRIT 295
+D K + +R+ ED + + + L E+ V+ G S+ S +
Sbjct: 288 ADFAVHTKSKTVDKYIRFS-----EDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYE 342
Query: 296 ALSVSASKIVPVLSG 310
LS ++V V+
Sbjct: 343 QLSFLDKRLVKVIKA 357
>gi|334325369|ref|XP_001362838.2| PREDICTED: DNA polymerase iota [Monodelphis domestica]
Length = 738
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+L+KL SG KP QQT + S + L+DS
Sbjct: 195 LLIGSQIAEEMREAIFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLIDS 254
Query: 113 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L IK+M +G K L++ LG+ +V DL FS L++ G + + ++ G
Sbjct: 255 LDHIKQMPGIGFKTTKRLES-LGINSVHDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 313
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S SF + + + + +L L R+C+D R HT+ L
Sbjct: 314 PVTPSGPPQSFSEEDSF---KKCSSEVEAKKKIEELLASLLNRVCND----GRKPHTIRL 366
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
F S +R+ S+ CP+
Sbjct: 367 IIRRFSSDRHFNRE---SRQCPI 386
>gi|123443410|ref|YP_001007383.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|420257437|ref|ZP_14760195.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|189044619|sp|A1JNY3.1|DPO4_YERE8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122090371|emb|CAL13239.1| DNA-damage-inducible protein P [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|404515086|gb|EKA28863.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 352
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQAIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|417346516|ref|ZP_12126349.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417371123|ref|ZP_12141791.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353579501|gb|EHC41021.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353608986|gb|EHC62416.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
Length = 356
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|282889601|ref|ZP_06298142.1| hypothetical protein pah_c002o049 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500524|gb|EFB42802.1| hypothetical protein pah_c002o049 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 271
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+L+ VLK T TCS GIA NK++AK+AS KP +P L +LPI + +
Sbjct: 40 KLKEAVLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFLATLPIGAIPGI 99
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA-RLLPK 180
G K SL ++ + T+ DL K D L E YG G + + A GI V PK
Sbjct: 100 GSKTEKSLIDD-RLYTIADLQKIDLDTLIERYG-TRGYYFYLAAHGIDKRPVDGEEYFPK 157
Query: 181 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKS 238
S G+ +F A T+ L + EL ++ C L+ Q + +L L S F++
Sbjct: 158 SIGAETTFEADLADSTI------LLETLSELVQKACKRLKKYQTRTRGFSLKLRYSDFRT 211
>gi|357975695|ref|ZP_09139666.1| DNA-directed DNA polymerase [Sphingomonas sp. KC8]
Length = 361
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
E+R ++L ET T SAGI++NK LAK+AS NKP Q + + ++ LP+ + +
Sbjct: 129 EIRARILAETGLTASAGISYNKFLAKIASDQNKPNGQCVITPAQGAAFIEHLPVGRFHGV 188
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K L N LG+ T DL + LQ+ +G G W I+RGI V KS
Sbjct: 189 GPKTAEKL-NRLGIFTGADLRRQELGWLQQHFG-KAGHWYHAISRGIDERAVVPDRPRKS 246
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
GS ++ L T A+V+ + + +E+
Sbjct: 247 SGSETTY--SHDLTTPAAVEDGVRAMADEV 274
>gi|417536912|ref|ZP_12189937.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353669430|gb|EHD06335.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 300
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|55823560|ref|YP_142001.1| DNA polymerase IV [Streptococcus thermophilus CNRZ1066]
gi|81559009|sp|Q5LYC2.1|DPO4_STRT1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55739545|gb|AAV63186.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus
CNRZ1066]
Length = 367
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VKPNRVRKSIGSERTY 262
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|399021125|ref|ZP_10723244.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. CF444]
gi|398093109|gb|EJL83499.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. CF444]
Length = 241
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 71 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 130
T +CS GIA NK+LAK+ S + KP T + V + LP +K+ +G K L
Sbjct: 5 TNLSCSIGIAPNKLLAKICSDLEKPNGLTILTMDDVPTRIWPLPARKINGIGPKAAEKL- 63
Query: 131 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 190
LG+ TVGDL + LQE +G + WL N+A+GI V PKS +F
Sbjct: 64 TALGIVTVGDLARADAGLLQEHFGRSYSAWLGNVAQGIDDRPVSTSSEPKSISRETTF-- 121
Query: 191 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
R L + L+ + L ER+ DL + + T+ +
Sbjct: 122 ERDLHARHD-REKLSGIFTALCERVADDLHRKGYLGRTIGI 161
>gi|299066596|emb|CBJ37786.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CMR15]
Length = 362
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVS 179
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 238 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|443309912|ref|ZP_21039589.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Synechocystis sp. PCC 7509]
gi|442780033|gb|ELR90249.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Synechocystis sp. PCC 7509]
Length = 326
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +++ +L ET T SAG++ NK LAK+ASGMNKP T + + +LPI+K
Sbjct: 93 IARQIKAAILAETSLTASAGVSVNKFLAKMASGMNKPNGLTVILPEHAVDFVAALPIEKF 152
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G T + N LG+ T DL ++S+ L +G G + + IAR V+ +
Sbjct: 153 HGIGEVTATKMNN-LGIHTGIDLKQYSQADLVRHFG-KVGHFYYLIARAEDNRIVEPNRI 210
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ SF K + ++ L +L E +++ L LE + + T+TL
Sbjct: 211 RKSIGAETSFT-----KDLDELKIMLLEL-ENIAQTLQHRLENYQALGRTITL 257
>gi|239638048|ref|ZP_04679007.1| DNA polymerase IV [Staphylococcus warneri L37603]
gi|239596331|gb|EEQ78869.1| DNA polymerase IV [Staphylococcus warneri L37603]
Length = 356
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++TE T SAG+++NK LAKLASGMNKP T + +++V +L L I +
Sbjct: 124 IANFIRRDILEQTELTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHDILMGLDIGEF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ + DL E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASEKVMHDNQIFNGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKSTRI 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +R ++ ++T T SAG+A NK LAK+AS KP Q +P V L +LP +K+
Sbjct: 154 VAKTIRAEIFRQTGLTASAGVAPNKFLAKIASDWRKPNGQFVLPPEKVAEFLHTLPPEKI 213
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
+G +Q+ LG+ TVGDLL+F +L +G G L+ +ARGI V+
Sbjct: 214 PGVGKVTRLKMQS-LGIDTVGDLLRFERGELANLFG-KWGYRLYELARGIDNRAVK 267
>gi|205351637|ref|YP_002225438.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|375122418|ref|ZP_09767582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|445131501|ref|ZP_21381799.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|205271418|emb|CAR36226.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326626668|gb|EGE33011.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|444850327|gb|ELX75429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
Length = 351
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEYLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|417355889|ref|ZP_12131585.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|417378884|ref|ZP_12147411.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417472629|ref|ZP_12168274.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417525134|ref|ZP_12184389.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353597694|gb|EHC54333.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|353619144|gb|EHC69627.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353653545|gb|EHC95057.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353670162|gb|EHD06852.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
Length = 356
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 220 EQNKRIA 226
E+ I
Sbjct: 276 ERRLAIV 282
>gi|222153676|ref|YP_002562853.1| DNA polymerase IV [Streptococcus uberis 0140J]
gi|222114489|emb|CAR43359.1| DNA polymerase IV [Streptococcus uberis 0140J]
Length = 364
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V I ++ + +E TCSAG+++NK LAKLAS KP T + V+ L
Sbjct: 129 IKSAVKIAKMIQHDIWQEVHLTCSAGVSYNKFLAKLASDFQKPHGLTLILPDQVEDFLAE 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +ELGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGTKSVEKL-HELGVYTGKDLLEIPEITLIDHFG-RFGFDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VKPNRIRKSIGSERTY 262
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Query: 50 DKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 108
DKL + + I E++ + E T SAG++ NK +AK+AS M+KP T + S ++
Sbjct: 121 DKLGIGSAIDIAMEIKQAIKDELNLTASAGVSINKFVAKVASDMDKPDGLTFIGPSKIER 180
Query: 109 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 168
++ LP++K + GK+ G+ DL K +E +L +G +G + + I RGI
Sbjct: 181 FIEQLPVEKFHGV-GKVTAEKMKIRGLHKGADLKKLTEGELVHLFG-KSGHFFYKIVRGI 238
Query: 169 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 228
VQA KS G+ +F L T + +LC +++ +C+ +EQ++ T
Sbjct: 239 DHRPVQANQETKSIGAEDTFSEDLELLTEMN-----EELC-KIAGTVCNRMEQHRLYGRT 292
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPLR 255
LT+ K SD + S S P+R
Sbjct: 293 LTI---KIKFSDFKQITRSRSFSEPIR 316
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIATCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|213023317|ref|ZP_03337764.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 209
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 7 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 63
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 64 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 121
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 122 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 171
Query: 220 EQNKRIA 226
E+ I
Sbjct: 172 ERRLAIV 178
>gi|417002085|ref|ZP_11941474.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479226|gb|EGC82322.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 344
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Query: 34 KATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 93
+ +V E D D+ KL L+ +V ++T + S GI++NK LAKLAS
Sbjct: 98 QVSVDEAYLVVDTDNPQKLAHI-------LQDKVQRQTGISISVGISYNKFLAKLASDWK 150
Query: 94 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 153
KP T + + +L + I K+ +G K L N++GV+ VGDLLK E+ L +++
Sbjct: 151 KPHGITKINKDDLDKMLPDISIDKVHGIGRKTSQKL-NKIGVSKVGDLLKLDEEYLTDNF 209
Query: 154 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 188
G GT+++++ RG+ +V KS G ++F
Sbjct: 210 G-KQGTYIYHVIRGVDNRKVNPSRKRKSIGKERTF 243
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 61 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 120
E+R ++L+ET T SAGI++NK LAKLAS KP Q VP + ++ LP+K+
Sbjct: 128 VEIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGEAFVEILPVKRFYG 187
Query: 121 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 180
+ G + + + LG+ T DL + S LQ+ +G +G W + I+RG V K
Sbjct: 188 V-GPVTAAKMSRLGIETGEDLRRQSLALLQQHFG-KSGPWYYAISRGEDHRAVNPNRERK 245
Query: 181 SHGSGKSF 188
S GS +F
Sbjct: 246 SSGSETTF 253
>gi|95931101|ref|ZP_01313827.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
gi|95132846|gb|EAT14519.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
Length = 380
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+ ++ +ETE T SAG+++NK LAK+AS +KPA T + + LPI++
Sbjct: 125 IAREILERIHRETELTASAGVSYNKFLAKVASDCHKPAGLTVITPDQASDFIAQLPIRRF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK+ LG+T DLLK+ E +L +G G + + IARGI V A
Sbjct: 185 FGV-GKVTEKKMLRLGITCGADLLKYPETELIRLFG-KQGRFFYRIARGIDERPVVA--- 239
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
H KS L + + + L+E++ L + A+T+TL
Sbjct: 240 ---HRQRKSIGNETTLSEDIRNRDQMLTILSALAEKIEGRLAHYQTSAYTITL 289
>gi|452820346|gb|EME27389.1| DNA polymerase iota subunit [Galdieria sulphuraria]
Length = 525
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
E+R + + + TCS G++++K+L+KLA+ ++KP +QT + V+ L +L ++K+ +
Sbjct: 171 EIRETIKSKLQLTCSGGLSNSKLLSKLAASIHKPDEQTVILPQCVESYLSNLNLRKLPGI 230
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G SL + V+T L ++L E +G G L+NI RGI E V L KS
Sbjct: 231 GSATYQSLVDHFLVSTCEQLRCIPVERLVEVFGSRLGIRLFNICRGIDEESVHDTSLVKS 290
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ F + + V+ +L + E L +RL
Sbjct: 291 ISCEERFSKT---ERWSEVERYLGIVVERLLDRL 321
>gi|405952422|gb|EKC20236.1| DNA polymerase iota [Crassostrea gigas]
Length = 734
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 95/212 (44%), Gaps = 19/212 (8%)
Query: 21 HILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 80
H+ G DS E +C C R + G I E+R + KE TC AGIA
Sbjct: 163 HVFG-------DSNQDSPEDICTCGCYER---ILIGSHIAEEIRAALYKEMGITCCAGIA 212
Query: 81 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVG 139
HNK+L+KL +KP QQTT+ + LP + + +G L E GV T+
Sbjct: 213 HNKLLSKLVGEQHKPNQQTTLFSHHASTFMSKLPKARSIPGVGSATARRLA-EFGVVTMT 271
Query: 140 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 199
DL + + L+ G +T + ++ GI V P++ SF K+ S
Sbjct: 272 DLQQCPLEDLKRELGGSTAVTIKELSEGIDENPVIPYSKPQTLSDEDSF------KSCCS 325
Query: 200 VQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ NQ +EL + L L ++ R+A T+ L
Sbjct: 326 VKEA-NQKIKELVKSLMIRLVEDGRVAGTVRL 356
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V L+ L I+K
Sbjct: 126 LLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLAFLEELEIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ ++G+ T DL S + L++ +G +G + +++ RGI V+
Sbjct: 186 FYGV-GKVTAEKMYKVGIFTGLDLKNKSLEFLEKHFG-KSGAYYYHVVRGIHNSPVKPNR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+PKS G+ ++F + ++S L +L E ++ L L+++K T+TL K
Sbjct: 244 IPKSVGAERTFN-----ENLSSEIFMLERL-ENIANELERRLKKSKIAGKTITL-----K 292
Query: 238 SSDSDSRKKFPSKSCP 253
SD + SK+ P
Sbjct: 293 IKYSDFTLQTRSKTIP 308
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 198
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 199 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 253
>gi|332160678|ref|YP_004297255.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664908|gb|ADZ41552.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330862504|emb|CBX72661.1| DNA polymerase IV [Yersinia enterocolitica W22703]
Length = 352
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQAIAIELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|325849681|ref|ZP_08170884.1| ImpB/MucB/SamB family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480022|gb|EGC83100.1| ImpB/MucB/SamB family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 347
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I +++ QVLK+T S GI++NK LAKLAS NKP + + +L+ L IKK
Sbjct: 116 IIAKKIQNQVLKQTGIGVSIGISYNKFLAKLASDWNKPFGIKEINEDDIPNILEDLDIKK 175
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ LG K L+ ++G+ + DLLK ++ L+ +G G +++ + RG +V+
Sbjct: 176 VHGLGNKSVEKLK-DIGIYKIKDLLKLDQEFLESLFG-KQGRYVYKVIRGEDKRKVETS- 232
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
K G+ F + K + + ++ +E+S ++ +DL+ A+T+ L
Sbjct: 233 -TKRKSIGREFTFRKNTKDMNILYSYI----DEISRKIENDLKAKDIKAYTINL 281
>gi|209547183|ref|YP_002279101.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538427|gb|ACI58361.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 363
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + I E+R ++ + T SAGI++NK LAK+AS +NKP Q +
Sbjct: 115 LDVTHNLKGMEIATEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ +++LP+KK +G + + LG+ T L + S + L E +G +G + +
Sbjct: 175 KNGPAFVEALPVKKFHGVGPATAERM-HRLGIDTGASLKEKSLEFLVEHFG-KSGPYFYG 232
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
IARGI +V+ + KS G+ +F + L T + L L E++ + E N
Sbjct: 233 IARGIDERQVKPNRVRKSVGAEDTF--SQDLHTFEPAREGLQPLI----EKVWAYCEANG 286
Query: 224 RIAHTLTL 231
A T+TL
Sbjct: 287 IGAKTVTL 294
>gi|416510596|ref|ZP_11737194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416520105|ref|ZP_11740182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416558896|ref|ZP_11760418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363549265|gb|EHL33622.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363556044|gb|EHL40261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363576390|gb|EHL60224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
Length = 351
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKILGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 50 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
D +LA V I E+ ++ +ET T SAG+++NK+LAKLAS KP +P
Sbjct: 126 DGILA--VEIAREILDRIHRETRLTASAGVSYNKLLAKLASDWRKPQGLFVIPPKRGLDF 183
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G L + +G+ TV DL ++++L +G G W + +ARGI
Sbjct: 184 LAPLPVGKLHGVGPATVKKL-SAMGIDTVSDLRAMAQERLIRCFG-KAGAWFYEVARGID 241
Query: 170 GEEVQARLLPKSHGSGKSF 188
VQ KS G+ ++F
Sbjct: 242 RRPVQPTRQRKSVGTERTF 260
>gi|444729661|gb|ELW70070.1| DNA polymerase iota [Tupaia chinensis]
Length = 617
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 18/206 (8%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 76 LLIGSHIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDLIHS 135
Query: 113 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L IK+M +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 136 LNHIKEMPGIGYKTAKRLE-ALGIHSVRDLQTFSSKILEKELGISVAQRIQKLSFG---- 190
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVAS---VQHWLNQLCEELSERLCSDLEQNKRIAHT 228
E + ++P G +SF + K +S V+ + +L L R+C Q+ R HT
Sbjct: 191 EDNSPVIPS--GPVQSFSEEDSFKKCSSEVEVKKKIEELLASLLNRVC----QDGRKPHT 244
Query: 229 LTLHASAFKSSDSDSRKKFPSKSCPL 254
+ L + S SR+ S+ CP+
Sbjct: 245 VRLIIRRYSSEKHYSRE---SRQCPI 267
>gi|282882761|ref|ZP_06291368.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
gi|281297422|gb|EFA89911.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
Length = 344
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 22/241 (9%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
E++ +LK+T + S G++ NK LAKLAS NKP + V +L L I+K+ +
Sbjct: 120 EMQDNILKKTGLSVSIGMSTNKFLAKLASDWNKPRGIKIISKDEVPDILMDLDIRKIHGI 179
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K L+N LG+ V DL ED L +G +G ++ RGI EVQ ++ KS
Sbjct: 180 GKKSEDKLRN-LGIDKVCDLYNLEEDFLINLFG-KSGEDIYKRIRGIDDREVQTKIKRKS 237
Query: 182 HGSGKS-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 240
G+ + FP + +++++ E+S+ DL + + TLT+
Sbjct: 238 LGTENTFFPTDNRI----DLENYIKIFSGEVSQ----DLIKRNLLGFTLTIKL------- 282
Query: 241 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRITAL 297
+ + K +KS YG K +ED + REF ++ G S+ S +I L
Sbjct: 283 KNDKFKIRTKSRTYEYGLYK-KEDIYREGLILFREFYNDDKIRLIGLTVSNLSDLKIHQL 341
Query: 298 S 298
+
Sbjct: 342 T 342
>gi|150863740|ref|XP_001382310.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
gi|149384996|gb|ABN64281.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
Length = 733
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 46 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
D D + G +IV ++R + E +T SAGIA NK +AKLA G KP Q + S
Sbjct: 242 GDWDDVCMLIGSMIVLDIRKALYDEMGYTTSAGIASNKQVAKLAGGFKKPDNQCVIRNRS 301
Query: 106 VKGLLDSLPIKKMKQLGGKLGTSLQNEL------GVTTVGDLLKFSEDKLQESYGFNT-- 157
L++ + + +GGK G + +L G++ + + F+ + ++E + +
Sbjct: 302 TYSFLNNFELNDVTSMGGKTGDFVLQKLRVPPDKGISYIRE--NFTLEAIEEEFNDDIPL 359
Query: 158 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 217
++ I RG E+ R+ KS S K+F ++T++ W+ +L R+
Sbjct: 360 AKKIYEIVRGNHRRELVNRMDVKSMMSRKNFLAKHPVETLSDADSWIKVFAGDLYNRMIE 419
Query: 218 DLEQNKRIA 226
E+N R++
Sbjct: 420 LDEENLRLS 428
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
E+R ++L+ T T SAG+++NK LAKLAS KP Q VP + + +LPI + +
Sbjct: 129 EIRARILETTGLTASAGVSYNKFLAKLASDQRKPNGQFVVPPGKGEAFVQTLPIGRFHGV 188
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G ++ LGV T DL + S LQ+ +G +G W + IARG V + KS
Sbjct: 189 GAVTEAKMKR-LGVHTGEDLHRQSLAFLQQHFG-RSGPWYYAIARGEDDRRVNPDRVRKS 246
Query: 182 HGSGKSF 188
GS +F
Sbjct: 247 SGSETTF 253
>gi|359686511|ref|ZP_09256512.1| DNA polymerase IV [Leptospira santarosai str. 2000030832]
Length = 360
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K++AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKLIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LPI + GK+ +LG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPIGSFHGV-GKVTAQKMKKLGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|409408114|ref|ZP_11256558.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum sp. GW103]
gi|386432570|gb|EIJ45397.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum sp. GW103]
Length = 384
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 4/173 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +++ V T TCS G+A NKMLAK++S ++KP T + ++ + LP +K+
Sbjct: 142 VARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDGLTILTPEDIERRIWPLPARKI 201
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L LG+ TV DL + S + L+ +G + WL +A+G+ VQ
Sbjct: 202 NGIGPKAAEKLAA-LGIETVADLARASPELLRAHFGRSYSEWLGRVAQGVDDRPVQTYSE 260
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
PKS +F R L A + L+++ L +L DLE+ + T+ +
Sbjct: 261 PKSISRETTF--ERDLHARAD-RAQLSEIFTALCVKLAGDLERKGYVGRTIGI 310
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|422316729|ref|ZP_16398113.1| DNA polymerase IV [Fusobacterium periodonticum D10]
gi|404590701|gb|EKA93027.1| DNA polymerase IV [Fusobacterium periodonticum D10]
Length = 352
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 10/190 (5%)
Query: 71 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL---GGKLGT 127
T TCS GI NK+ AK+AS +NKP F + K ++ + KK+K + G K
Sbjct: 129 TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKNFIEYISDKKIKIIPGVGRKFSE 186
Query: 128 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 187
L+++ + V D+ K+S D L + YG + G L+ RGI+ +EV+ S G+ ++
Sbjct: 187 ILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVEYEREIHSIGNEET 245
Query: 188 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 247
+ P L+T++ ++ N L E +RL + ++ I T+ + ++FK+ + KF
Sbjct: 246 YSIP--LQTISELEREFNSLFEYTYQRLIKNNVFSQSI--TVKIRYTSFKTYTKSKKLKF 301
Query: 248 PSKSCPLRYG 257
+K Y
Sbjct: 302 ATKDKDFLYN 311
>gi|422022011|ref|ZP_16368520.1| DNA polymerase IV [Providencia sneebia DSM 19967]
gi|414097761|gb|EKT59414.1| DNA polymerase IV [Providencia sneebia DSM 19967]
Length = 351
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI +R Q+ KE + T SAG+A K LAK+AS MNKP Q + ++ + +LP+KK
Sbjct: 121 LIAQAIRQQIFKELQLTASAGVAPIKFLAKIASDMNKPNGQYVITPQNMDEFVRTLPLKK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L ++G+ T D+ + L +S G G LW I +
Sbjct: 181 IPGVGKVTAQKLL-DMGLATCSDVQHYDVVNLIKSMG-KFGQILWERCHAIDERPINPDR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 226
L KS G ++ V + HW L++L +EL RL + + N+RIA
Sbjct: 239 LRKSVGVERTL--------VQDIHHWEDCIPLLDKLYDELEVRL-TKISPNRRIA 284
>gi|424917329|ref|ZP_18340693.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853505|gb|EJB06026.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 363
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + I E+R ++ + T SAGI++NK LAK+AS +NKP Q +
Sbjct: 115 LDVTHNLKGMEIATEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ +++LP+KK +G + + LG+ T L + S + L E +G +G + +
Sbjct: 175 KNGPAFVEALPVKKFHGVGPATAERM-HRLGIDTGASLKEKSLEFLVEHFG-KSGPYFYG 232
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
IARGI +V+ + KS G+ +F + L T + L L E++ + E N
Sbjct: 233 IARGIDERQVKPNRVRKSVGAEDTF--SQDLHTFEPAREGLQPLI----EKVWAYCEANG 286
Query: 224 RIAHTLTL 231
A T+TL
Sbjct: 287 IGAKTVTL 294
>gi|336476258|ref|YP_004615399.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929639|gb|AEH60180.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 361
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 25/235 (10%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D DH AC +I +++ ++ + TCS GIA K +AK+AS NKP T VP +
Sbjct: 123 DYDH-----AC--MIAEQIKKEIFRAEGLTCSIGIAPGKKVAKIASDYNKPDGLTVVPPA 175
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
VK L +P+ K+ +G K L+ E+ + VG L ++ L +G +G ++ I
Sbjct: 176 KVKEFLAPMPVSKIPGIGKKTEQMLR-EMNIYRVGQLAEYDVQALISRFG-KSGIFMKQI 233
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRA-LKTVASVQHWLNQLCEELSERLCSDLEQNK 223
A G+ E++ KS +F A + V SV L LCEE+ + + + +
Sbjct: 234 ANGVDHGEIKQYRESKSISKEDTFEEDTADYRIVESV---LMSLCEEVHRAMKINNFRFR 290
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 278
I TL + S F++ S K P++ + I++ + NL ++EF+G
Sbjct: 291 TI--TLKVRFSDFRTYTRSSTLKCPAEEMDI------IKQHSKNL----IKEFIG 333
>gi|418324714|ref|ZP_12935944.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
gi|365224987|gb|EHM66242.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
Length = 356
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R + ++T+ T SAG+++NK LAKLASGMNKP T + +++V +L +L I + +G
Sbjct: 128 IRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNNLTVIDYNNVHEILMNLNIGGFRGVG 187
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ G+ T DL SE +L +G G L+N ARGI V++ + KS
Sbjct: 188 PTTEEKMHAN-GIYTGKDLYDKSERELIRLFG-KKGHGLYNKARGIDESPVKSERIRKSV 245
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
G+ ++F + + LN++ ELS + L + ++ T+T+ ++
Sbjct: 246 GTERTFA-----TDMNDDEQVLNKIW-ELSTKTAERLSRIQKSGKTVTVKIKTYR 294
>gi|409440154|ref|ZP_11267166.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
gi|408747756|emb|CCM78348.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
Length = 362
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +E+R ++ + T SAGI++NK LAK+AS +NKP Q + + G +++LP++K
Sbjct: 129 IASEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVQKF 188
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + LG+ T DL + + + L E +G +G + + IARGI +V+ +
Sbjct: 189 HGVGPATAEKM-HRLGIDTGADLKEKTLEFLVEHFG-KSGPYFYGIARGIDERQVKPDRV 246
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 247 RKSVGAEDTF 256
>gi|332185220|ref|ZP_08386969.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
gi|332014944|gb|EGI57000.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
Length = 370
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 70 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 129
ET T SAG+++NK +AKLAS NKP +P G + +LP+K+ +G +
Sbjct: 142 ETGLTASAGVSYNKFIAKLASDQNKPDGICVIPPHHGPGFVAALPVKRFHGVGPVTARKM 201
Query: 130 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 189
+ LG+ T DL D L +G + +L+ ARGI V+A+ + KS G+ ++F
Sbjct: 202 E-ALGILTGADLRDQPRDFLHRHFG-SYAEYLYGAARGIDHRPVRAQRVAKSVGAERTF- 258
Query: 190 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+T S + L+ E++ E +E++ I T+TL
Sbjct: 259 -----ETDLSERDALHAALEKVVEAAWIRIERSGAIGRTVTL 295
>gi|17546306|ref|NP_519708.1| DNA polymerase IV [Ralstonia solanacearum GMI1000]
gi|17428603|emb|CAD15289.1| probable dna polymerase iv (pol iv) protein [Ralstonia solanacearum
GMI1000]
Length = 362
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 179
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 238 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|126698476|ref|YP_001087373.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
gi|123174445|sp|Q18A91.1|DPO4_CLOD6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115249913|emb|CAJ67732.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
Length = 365
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 185 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 243 RKSVGAETTLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
>gi|213580624|ref|ZP_03362450.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
Length = 255
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 10 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 66
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 67 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 124
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 125 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 174
Query: 220 EQNKRIA 226
E+ I
Sbjct: 175 ERRLAIV 181
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|387790872|ref|YP_006255937.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
gi|379653705|gb|AFD06761.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
Length = 366
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Query: 44 CDADHRDKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 102
D H DKL + + I +++ + E T SAG++ NK +AK+AS +NKP T +
Sbjct: 114 LDVTH-DKLEIGSAIEIAMQIKKAIKDELNLTASAGVSVNKFVAKIASDINKPDGLTFIG 172
Query: 103 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 162
S ++ ++SL ++K + G++ + + T DL K +E++L +G G + +
Sbjct: 173 PSKIESFMESLAVEKFHGI-GRVTAEKMKRMNLFTGADLKKLTEEQLLLHFG-KPGKFYY 230
Query: 163 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
I RGI EVQ + KS G+ +F P L + + L+++ + +++RL Q
Sbjct: 231 KIVRGIDDREVQPNRVTKSVGAEDTF--PYDLTDLEEMNVELDKIAKTVADRLQR--YQL 286
Query: 223 KRIAHTLTLHASAFK 237
K TL + S FK
Sbjct: 287 KGRTLTLKIKYSDFK 301
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIASNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|22095618|sp|Q8XZ19.2|DPO4_RALSO RecName: Full=DNA polymerase IV; Short=Pol IV
Length = 357
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 115 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 174
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 175 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 232
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 233 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 274
>gi|421733502|ref|ZP_16172606.1| DNA polymerase IV [Bifidobacterium bifidum LMG 13195]
gi|407078538|gb|EKE51340.1| DNA polymerase IV [Bifidobacterium bifidum LMG 13195]
Length = 430
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R +V + TCS G+A NK++AK+AS KP +P + + +P++ + +G
Sbjct: 144 IRQEVASRSHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIG 203
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKS 181
L L E GV TV DL K SE L + G T L+ ARG+ G EV KS
Sbjct: 204 PSLERRLA-EWGVKTVADLAKMSEQTLATAIGSQTMAHGLYMAARGMDGREVTPYTPEKS 262
Query: 182 HGSGKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
S +FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 263 ISSESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 306
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|315125765|ref|YP_004067768.1| DNA polymerase IV [Pseudoalteromonas sp. SM9913]
gi|315014279|gb|ADT67617.1| DNA polymerase IV [Pseudoalteromonas sp. SM9913]
Length = 353
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++LK T T SAGIA K +AK+AS +NKP Q T+ V L++LP+KK
Sbjct: 121 LIAQEIRDEILKATGLTASAGIAPLKFVAKVASDLNKPNGQCTITPDQVWEFLETLPLKK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ LG T GD+ + E L ++G G LWN + G EV+
Sbjct: 181 IPGV-GKVTFEKLKALGFETCGDIRRSDESFLASNFG-KYGHVLWNRSHGKDDREVEVTR 238
Query: 178 LPKSHGSGKSF 188
+ KS G ++F
Sbjct: 239 IRKSVGVERTF 249
>gi|255100011|ref|ZP_05328988.1| DNA polymerase IV [Clostridium difficile QCD-63q42]
gi|255305898|ref|ZP_05350070.1| DNA polymerase IV [Clostridium difficile ATCC 43255]
gi|423090257|ref|ZP_17078565.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
gi|357556932|gb|EHJ38503.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
Length = 365
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 185 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 243 RKSVGAETTLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
>gi|51595246|ref|YP_069437.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 32953]
gi|153950157|ref|YP_001402117.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
gi|170025513|ref|YP_001722018.1| DNA polymerase IV [Yersinia pseudotuberculosis YPIII]
gi|186894264|ref|YP_001871376.1| DNA polymerase IV [Yersinia pseudotuberculosis PB1/+]
gi|81640247|sp|Q66DZ7.1|DPO4_YERPS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044620|sp|A7FLI9.1|DPO4_YERP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|51588528|emb|CAH20136.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Yersinia pseudotuberculosis IP 32953]
gi|152961652|gb|ABS49113.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
gi|169752047|gb|ACA69565.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
gi|186697290|gb|ACC87919.1| UMUC domain protein DNA-repair protein [Yersinia pseudotuberculosis
PB1/+]
Length = 352
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T G++ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGEIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|146317857|ref|YP_001197569.1| DNA polymerase IV [Streptococcus suis 05ZYH33]
gi|145688663|gb|ABP89169.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 05ZYH33]
Length = 337
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 111 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 170
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 171 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 228
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 229 VKVDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 281
>gi|410595093|ref|YP_006951820.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
gi|410518732|gb|AFV72876.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
Length = 364
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKP 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G + L + LGV T DLL SE L + +G G + ARGI+
Sbjct: 189 LPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEVSLIDMFG-RFGYDRYRKARGINASP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 247 VKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|307180994|gb|EFN68768.1| DNA polymerase iota [Camponotus floridanus]
Length = 549
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C CD R L G I +R ++ +E TCSAGIAHNK+LAKLA +NKP QQT V
Sbjct: 130 CPCDCHTR---LMIGAKIAAGIRNRIYEELHLTCSAGIAHNKLLAKLAGSLNKPNQQTLV 186
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
S LL ++ I K+ +G K L + + TV D+ K + L+ G +
Sbjct: 187 FPCSGPMLLSAIGSISKIPGVGQKTMELLLSN-NIKTVDDVRKIPLENLELKIGVDLARR 245
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
L + A GI V+ +S G F +++ VA V+ L L L+E D
Sbjct: 246 LKDNAEGIDETVVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED 300
>gi|452818943|gb|EME26075.1| DNA polymerase kappa subunit [Galdieria sulphuraria]
Length = 537
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 15/230 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP--FSSVKGLLDSLPIK 116
+V+++R + + T TCSAG+A N M+AK+A+ +NKP QT V ++ L+ L ++
Sbjct: 207 VVSKIRQNIFENTGITCSAGVASNTMIAKIATDLNKPNGQTIVQPDMVCIQNFLNPLSVR 266
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 176
K+ + G++ L + L + + D++ L T +L A GI+ +
Sbjct: 267 KIPGV-GRVTEKLLSSLNIFCIQDIIS-HRSVLFHCMRRKTFEFLLQSALGIAPAFIC-- 322
Query: 177 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
S K R K +S++ L ++CE +S+ L DLE A TLTL
Sbjct: 323 ----ESESRKGMSRERTFKPTSSLEE-LRKICESVSKLLADDLEAEDMYAKTLTLK---I 374
Query: 237 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 286
K SD R + +K C Y +I E+ + L + + GV+ G
Sbjct: 375 KCSDFSVRTRAVTK-CFFIYRYEQILENAWKLLLKEMPIEIRLLGVRANG 423
>gi|67010005|ref|NP_001019863.1| DNA polymerase iota [Bos taurus]
gi|66393909|gb|AAY46031.1| DNA polymerase iota [Bos taurus]
Length = 747
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 49 RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
RD L L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S
Sbjct: 201 RDTLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPES 260
Query: 106 VKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+ L+ SL IK+M +G K L+ LG+++V DL F L++ G + + +
Sbjct: 261 SQELIHSLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKL 319
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+ G V P+S SF + + + + +L L R+C Q+ R
Sbjct: 320 SFGEDDSPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGR 372
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
HT+ L + S +R+ S+ CP+
Sbjct: 373 KPHTIRLIIRRYSSEKHYNRE---SRQCPI 399
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|296473688|tpg|DAA15803.1| TPA: DNA polymerase iota [Bos taurus]
Length = 747
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 49 RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
RD L L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S
Sbjct: 201 RDTLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPES 260
Query: 106 VKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+ L+ SL IK+M +G K L+ LG+++V DL F L++ G + + +
Sbjct: 261 SQELIHSLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKL 319
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+ G V P+S SF + + + + +L L R+C Q+ R
Sbjct: 320 SFGEDDSPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGR 372
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
HT+ L + S +R+ S+ CP+
Sbjct: 373 KPHTIRLIIRRYSSEKHYNRE---SRQCPI 399
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 198
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 199 PG-AGKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 253
>gi|395231474|ref|ZP_10409763.1| DNA polymerase IV [Citrobacter sp. A1]
gi|421845641|ref|ZP_16278794.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424731297|ref|ZP_18159882.1| dna polymerase iv [Citrobacter sp. L17]
gi|394714777|gb|EJF20673.1| DNA polymerase IV [Citrobacter sp. A1]
gi|411773176|gb|EKS56747.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422894271|gb|EKU34085.1| dna polymerase iv [Citrobacter sp. L17]
gi|455646713|gb|EMF25740.1| DNA polymerase IV [Citrobacter freundii GTC 09479]
Length = 351
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAGIA K LAK+AS +NKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFTELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFLRTLPLGK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T D+ K+ L + +G G LW ++GI +V
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDERDVNNDR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + W CEE+ ERL +LE+
Sbjct: 239 LRKSVGVERTL--------AEDIHEWAE--CEEIIERLYPELERR 273
>gi|148744927|gb|AAI42235.1| POLI protein [Bos taurus]
Length = 701
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 49 RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
RD L L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S
Sbjct: 155 RDTLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPES 214
Query: 106 VKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+ L+ SL IK+M +G K L+ LG+++V DL F L++ G + + +
Sbjct: 215 SQELIHSLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKL 273
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+ G V P+S SF + + + + +L L R+C Q+ R
Sbjct: 274 SFGEDDSPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGR 326
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
HT+ L + S +R+ S+ CP+
Sbjct: 327 KPHTIRLIIRRYSSEKHYNRE---SRQCPI 353
>gi|385855494|ref|YP_005902007.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
gi|325204435|gb|ADY99888.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
Length = 352
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ + T T SAG+++NK LAKLAS KP +P + + LPI +
Sbjct: 127 IAKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGAEFVQGLPIGRF 186
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G ++ G+ T DL + S D L +G +G + WNI+RGI EV+ +
Sbjct: 187 HGIGPATAARMEAH-GILTGADLARQSLDFLTARFG-KSGAYYWNISRGIDTREVKPDRI 244
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
KS G+ ++ L+ +A+ L L +++
Sbjct: 245 RKSIGAENTY--FEDLRDIAAAHEALAVLADKV 275
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|379705975|ref|YP_005204434.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374682674|gb|AEZ62963.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 363
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
+ I ++ + +E TCSAG+++NK LAKLAS +KP T V + L LPI
Sbjct: 132 AIKIAKMIQYDIWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFLKKLPI 191
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K +G K L +++GV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVRP 249
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS GS +++ + L A ++ +++ + R+ L +N ++ + L
Sbjct: 250 NRIRKSIGSERTY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVVL 299
>gi|238759709|ref|ZP_04620868.1| DNA polymerase IV [Yersinia aldovae ATCC 35236]
gi|238702035|gb|EEP94593.1| DNA polymerase IV [Yersinia aldovae ATCC 35236]
Length = 352
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E T SAGIA K LAK+AS +NKP Q + + L LP+
Sbjct: 119 ATLIAREIRQTIYDELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQILPFLYELPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G LQ ELG+ T GD+ +S+ +L + +G G LW + GI +
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLATCGDVQNYSQAELLKRFG-KFGRVLWERSHGIDERGISP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEQLYVELETRLR 275
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 198
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 199 PG-AGKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 253
>gi|311741548|ref|ZP_07715372.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311303718|gb|EFQ79797.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 462
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 17/231 (7%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
ELR + +ET CS G K AK+ SG KP +P +L L + K+ +
Sbjct: 127 ELRALIREETGLPCSIGAGSGKQFAKIGSGEAKPDGTFVIPAERQLDMLHPLAVNKLWGV 186
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G G L++ +GV T+G L + +++ S G G LW +ARGI EV R + K
Sbjct: 187 GPVTGAKLKS-IGVETIGQLAAMTRKEVEISIGSVVGLQLWQLARGIDDREVAPRAISKQ 245
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 241
+ ++ P+ L+T V + + E RL D R A T+T+ + +D
Sbjct: 246 ISTEHTY--PKDLQTAPEVDAAITRAAEGAHRRLLKD----GRGARTVTVK---LRMADF 296
Query: 242 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG-VKTQGSHYSG 291
S+S L Y T T F+ L + G ++ G YSG
Sbjct: 297 ----HIESRSTTLPYATDDAAVLTAAAFK--LARYPDELGPIRLVGVSYSG 341
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|298675570|ref|YP_003727320.1| DNA-directed DNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298288558|gb|ADI74524.1| DNA-directed DNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 364
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+++ ++ + TCS GIA NK +AK+AS KP T + V+ L LP+ K+ +
Sbjct: 133 QIKDKIYNYEKLTCSIGIAPNKTIAKIASDFKKPDGLTAIKPEEVENFLSPLPVSKIPGV 192
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K +L N LGV T+GDL F L +G +G ++ IA+GI EV+ + KS
Sbjct: 193 GKKTNEALDN-LGVKTIGDLKNFDVQVLIGKFG-KSGLRMYQIAKGIDNREVEEQTEVKS 250
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+F A A ++ + LS+ + + L + K + T+TL
Sbjct: 251 ISKEDTFDEDIADPITAE------EIIDILSDEVHNSLVKKKYLFKTVTL 294
>gi|374623299|ref|ZP_09695812.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
gi|373942413|gb|EHQ52958.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
Length = 383
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
L+ V T TCS GIA NK+LAKL S ++KP T + V + LP+ K+ +
Sbjct: 146 RLKQAVRDATGLTCSIGIAPNKLLAKLCSELDKPDGLTLLTTDDVPTRIWPLPVGKVNGI 205
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K L+ LG+ TVGDL L+E +G G WL ARGI V+ +P+S
Sbjct: 206 GPKAAARLE-ALGILTVGDLAACGPGLLREQFGPTYGAWLHQAARGIDDRPVETVSVPRS 264
Query: 182 HGSGKSFP---GPRALKTVASVQHWLNQLCEELSERL 215
+F PR + A + LC +S+ L
Sbjct: 265 VSRETTFERDLHPR--QDRAELSEIFTALCMRVSQDL 299
>gi|289577475|ref|YP_003476102.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
gi|289527188|gb|ADD01540.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
Length = 389
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I E++ +V + T T SAG+++NK LAKLAS NKP T + + +L LP+ K
Sbjct: 118 VIAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIPDILKPLPVSK 177
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G K L++ +G+ T+GDLLK S++ L E +G G ++ RGI V+
Sbjct: 178 VYGIGEKSEERLKS-MGINTIGDLLKLSQENLVEIFG-KVGVEIYLRIRGIDERPVETMR 235
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G K+ + K + H+ + +SE L
Sbjct: 236 EIKSIGKEKTL--EKDTKDKKLLLHYAKLFSDIISEEL 271
>gi|171779234|ref|ZP_02920205.1| hypothetical protein STRINF_01082 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282290|gb|EDT47717.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 364
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
+ I ++ + +E TCSAG+++NK LAKLAS +KP T V + L LPI
Sbjct: 133 AIKIAKMIQYDIWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFLKKLPI 192
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K +G K L +++GV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 193 EKFHGVGKKSVEKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVRP 250
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ KS GS +++ + L A ++ +++ + R+ L +N ++ + L
Sbjct: 251 NRIRKSIGSERTY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVVL 300
>gi|119469761|ref|XP_001257973.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
gi|119406125|gb|EAW16076.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
Length = 1154
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR V T S GI N +LAK+A KPA Q + SV L+ L ++ +
Sbjct: 510 IAQNLRESVKAATGCDVSVGIGGNILLAKVALRKAKPAGQFQLKPDSVLDLIGDLTVQDL 569
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G LG L+ ELGV V D+ S +KL G TG +W ARGI EV +L
Sbjct: 570 PGVGYSLGAKLE-ELGVKFVKDVRDVSREKLINHLGPKTGLKIWEYARGIDRTEVGNEVL 628
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + ++ G R + + + ++ LCEEL RL +L + K++
Sbjct: 629 RKSVSAEVNW-GIRFVNQTQA-EDFVKSLCEELHRRLSDNLVKGKQL 673
>gi|423081977|ref|ZP_17070572.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|423085581|ref|ZP_17074023.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
gi|357549227|gb|EHJ31074.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|357549498|gb|EHJ31344.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
Length = 366
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 7/187 (3%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D K + + I +++ + +E T SAG+++NK LAK+AS + KP T +
Sbjct: 112 DVTKNKKSIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEE 171
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+ + LD LP+ K +G +L+N LG+ T DL + +L+ + G L+
Sbjct: 172 NAQDFLDKLPVNKFFGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKF 229
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
ARGI V+ + KS G+ + + ++ L++LCEE +C L+ +++
Sbjct: 230 ARGIDDRPVEPNRVRKSVGAETTLSHNLDIDE-EETRNILDELCEE----VCHRLKSSEK 284
Query: 225 IAHTLTL 231
TLTL
Sbjct: 285 FGKTLTL 291
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|254493799|ref|ZP_05106970.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268594856|ref|ZP_06129023.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268596764|ref|ZP_06130931.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268601428|ref|ZP_06135595.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268603758|ref|ZP_06137925.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268682227|ref|ZP_06149089.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291043738|ref|ZP_06569454.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
gi|226512839|gb|EEH62184.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268548245|gb|EEZ43663.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268550552|gb|EEZ45571.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268585559|gb|EEZ50235.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268587889|gb|EEZ52565.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268622511|gb|EEZ54911.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291012201|gb|EFE04190.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
Length = 352
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PG-AGKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 237
>gi|418743619|ref|ZP_13299980.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
gi|410795642|gb|EKR93537.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
Length = 360
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LPI + GK+ +LG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPIGSFHGV-GKVTAQKMKKLGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|417840269|ref|ZP_12486413.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
gi|341949079|gb|EGT75689.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
Length = 355
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 4/171 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H K I E+R + E T SAG+A K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V + +L + K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVSEFIKTLSLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ GI EVQA KS G ++ + T+ LN L +EL RL
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--IENIHTIEQASELLNNLYDELIRRL 277
>gi|297543787|ref|YP_003676089.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841562|gb|ADH60078.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 389
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I E++ +V + T T SAG+++NK LAKLAS NKP T + + +L LP+ K
Sbjct: 118 VIAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIPDILKPLPVSK 177
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G K L++ +G+ T+GDLLK S++ L E +G G ++ RGI V+
Sbjct: 178 VYGIGEKSEERLKS-MGINTIGDLLKLSQENLVEIFG-KVGVEIYLRIRGIDERPVETMR 235
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G K+ + K + H+ + +SE L
Sbjct: 236 EIKSIGKEKTL--EKDTKDKKLLLHYAKLFSDIISEEL 271
>gi|402487090|ref|ZP_10833915.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
gi|401813920|gb|EJT06257.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
Length = 363
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ T T SAGI++NK LAK+ASG NKP Q + + ++ LP+KK
Sbjct: 130 IADEIRAKIKATTGLTASAGISYNKFLAKMASGENKPNGQFVITPKNGPAFVERLPVKKF 189
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + LG+ T DL + + + L E +G +G + IARG+ +V+ +
Sbjct: 190 HGVGPATAEKM-HRLGIETGADLRRMTLEFLVEHFG-KSGPYFHGIARGLDNRQVRPDRV 247
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 248 RKSVGAEDTF 257
>gi|456877106|gb|EMF92144.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. ST188]
Length = 360
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LPI + GK+ +LG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPIGSFHGV-GKVTAQKMKKLGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|344167777|emb|CCA80020.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [blood disease bacterium R229]
Length = 318
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 76 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 135
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 136 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 193
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 194 QVQPSQIRKSVSVEETYATD--LRTLDDCQRELTILVDQLAARV 235
>gi|300814315|ref|ZP_07094587.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511582|gb|EFK38810.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 344
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 22/240 (9%)
Query: 64 RMQ--VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+MQ +LK+T + S G++ NK LAKLAS NKP + V +L L I+K+ +
Sbjct: 120 KMQDNILKKTGLSVSIGMSTNKFLAKLASDWNKPRGIKIITKDEVPDILMDLDIRKIHGI 179
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K L+N LG+ V DL ED L +G +G ++ RGI EVQ ++ KS
Sbjct: 180 GKKSEDKLRN-LGIDKVCDLYNLEEDFLINLFG-KSGEDIYKRIRGIDDREVQTKIKRKS 237
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 241
G+ +F P + V +++++N E+S+ DL + + TLT+
Sbjct: 238 LGTENTF-FPTDNRRV--LENYINIFSVEVSQ----DLIKRNLLGFTLTIKL-------K 283
Query: 242 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRITALS 298
+ + K +KS YG K +ED REF ++ G S+ S +I L+
Sbjct: 284 NDKFKIRTKSRTYEYGLYK-KEDIHREGLILFREFYNDDKIRLIGLTVSNLSDLKIHQLT 342
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R +L ET T SAG+++NK LAKLAS KP Q +P + + + +LP+
Sbjct: 126 IAEEIRAAILHETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEAFVANLPVNAF 185
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 186 HGVGPATAQRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRP 243
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 211
KS G +F + L+T A + L++L ++
Sbjct: 244 RKSLGKEITF--AQDLRTSAELHAALHELAAKV 274
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|423138823|ref|ZP_17126461.1| DNA polymerase IV [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379051377|gb|EHY69268.1| DNA polymerase IV [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 351
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHAWSD--CEAIIEYLYPEL 270
Query: 220 EQN 222
E+
Sbjct: 271 ERR 273
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|417643636|ref|ZP_12293673.1| DNA polymerase IV [Staphylococcus warneri VCU121]
gi|445059261|ref|YP_007384665.1| DNA polymerase IV [Staphylococcus warneri SG1]
gi|330685556|gb|EGG97202.1| DNA polymerase IV [Staphylococcus epidermidis VCU121]
gi|443425318|gb|AGC90221.1| DNA polymerase IV [Staphylococcus warneri SG1]
Length = 356
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++TE T SAG+++NK LAKLASGMNKP T + +++V +L +L I +
Sbjct: 124 IANFIRRDILEQTELTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHDILMNLDIGEF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ + DL E +L +G G L+N RGI EV++ +
Sbjct: 184 PGV-GKASEKVMHDNQIFNGQDLYNKDEFELIRLFG-KRGRGLYNKVRGIDHNEVKSTRI 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|78043703|ref|YP_360472.1| DNA polymerase IV [Carboxydothermus hydrogenoformans Z-2901]
gi|123576024|sp|Q3ABL2.1|DPO4_CARHZ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|77995818|gb|ABB14717.1| DNA polymerase IV - AMBIGUITY [Carboxydothermus hydrogenoformans
Z-2901]
Length = 391
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D KL G I +++ ++ +ETE T S G+A NK LAKLAS +NKP V
Sbjct: 109 LDVTGSQKLFGPGAEIGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVRE 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+V L LP++ + +G K+ L N++G+ TV D + E L++ +G G L+
Sbjct: 169 DNVLDFLAPLPVEMLWGVGEKMKERL-NDMGIKTVQDFWELPEFFLRKKFGV-LGQNLYY 226
Query: 164 IARGISGEEVQARLLPKSHG 183
++RGI EV +PKS G
Sbjct: 227 LSRGIDFREVIPERVPKSLG 246
>gi|418698608|ref|ZP_13259584.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410762394|gb|EKR28556.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 341
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K ++KLAS NKP T V
Sbjct: 99 LDVTFNKKNIPFAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLP 158
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL S D+L + +G G + +
Sbjct: 159 DDVISFIDPLPVSSFHGV-GKVTARKMKELGIYTGKDLRTKSIDELVQHFG-KMGIYYYK 216
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG VQ+ KS G+ +F
Sbjct: 217 ISRGEDERMVQSSRERKSLGAESTF 241
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 37/225 (16%)
Query: 7 PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQ 66
P SLDE +++ E+K G S + W+ +C
Sbjct: 103 PLSLDE-------AYLDVTENKVGMPSATVIASWIRQC---------------------- 133
Query: 67 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 126
+ ++T SAGI+ NK +AK+AS +NKP Q T+P V L+ L IKK +G K
Sbjct: 134 IKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEELDIKKFYGIGKKTA 193
Query: 127 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 186
+ G+ T DL S++ L +++G +G + ++I RGI EV+ + KS + +
Sbjct: 194 EKMYLH-GIFTGMDLKLKSKEYLSDNFG-KSGAYYYDIVRGIQHSEVKPNRIRKSLAAER 251
Query: 187 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+F + + S L +L E ++E + LE++K T+TL
Sbjct: 252 TFR-----ENITSEIFMLEKL-EHIAEEVERRLEKSKVAGKTITL 290
>gi|410450101|ref|ZP_11304144.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
gi|410016110|gb|EKO78199.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
Length = 360
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K E T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRIELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LPI + GK+ ELG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPIGSFHGV-GKVTAQKMKELGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|357237453|ref|ZP_09124794.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
gi|356753643|gb|EHI70746.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
Length = 365
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L V I ++ + KE TCSAG+++NK LAKLAS KP T + L
Sbjct: 129 LKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDYQKPHGLTLILPEDALTFLKE 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI K +G K L+ E+G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIAKFHGVGKKSVIKLE-EMGIFTGADLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+A + KS GS +++ + L V+ +++ LSE L S N++ TL L
Sbjct: 247 VKANRIRKSIGSERTY--GKLLYEEKDVKAEISKNASRLSELLKS----NQKSGKTLVL 299
>gi|170067256|ref|XP_001868410.1| DNA polymerase IV [Culex quinquefasciatus]
gi|167863443|gb|EDS26826.1| DNA polymerase IV [Culex quinquefasciatus]
Length = 647
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C D R L G + E+R + +E C AG+AHNK+LAKL +NK +QT +
Sbjct: 167 CGCGCDRR---LILGTHMAKEIRDCIARELGLKCCAGVAHNKLLAKLVGSVNKQNKQTVL 223
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ L SL +K + +G K L+ E+GV TV DL + S +KL + G
Sbjct: 224 LPNCGSSFLASLGSVKALTGIGEKTAEILE-EVGVKTVRDLQETSVEKLAKRLGLEQAGR 282
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L IA G V+A PKS G S P A+ A + L L + + D
Sbjct: 283 LKEIAFGKDDTPVKATGKPKSVGLEDSCP---AISIRADAEDKFRHLIVRLVKNIAEDGR 339
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRK 245
I T+ H S ++S + ++
Sbjct: 340 IPIAIKVTIRKHDSVRRTSHRECKQ 364
>gi|383816275|ref|ZP_09971676.1| DNA polymerase IV [Serratia sp. M24T3]
gi|383294936|gb|EIC83269.1| DNA polymerase IV [Serratia sp. M24T3]
Length = 352
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 18/234 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ +E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K
Sbjct: 121 LMASEIRQAIFDELNLTASAGIAPIKFLAKIASDLNKPNGQFVITPDKVADFLQDLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L+++ G+ T GD+ ++ L + +G G LW +GI E+ +
Sbjct: 181 IPGVGKVTARKLEDQ-GLMTCGDVQRYDLALLLKRFG-KFGRVLWERCQGIDEREISSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTLTLHASAF 236
L KS G ++ + W + C EL +RL +LE R++ +L +
Sbjct: 239 LRKSVGVERTL--------AEDIHDW--ESCVELIDRLYPELETRLTRVSPSLRIARQGV 288
Query: 237 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 290
K D ++ P+ + D + Q G GV+ G H +
Sbjct: 289 KLKFHDFQQTTQEHVWPVLN-----KADLLKVAQEAWEMRRGGRGVRLVGLHVT 337
>gi|417845577|ref|ZP_12491603.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
gi|341954646|gb|EGT81119.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
Length = 355
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H K I E+R + E T SAG+A K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFNELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V+ + +L + K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVEEFIKTLSLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+ GI EVQA KS G ++ + T+ LN L +EL RL +R
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--IENIHTIEQASALLNNLYQELIRRL-------ER 279
Query: 225 IAHTLTLHASAFK 237
++ + L SAF+
Sbjct: 280 VSRNIPL--SAFR 290
>gi|296877987|ref|ZP_06902006.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
gi|296431055|gb|EFH16883.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
Length = 366
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 126 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEENAQDFLDKLPVNKF 185
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 186 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 243
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 244 RKSVGAETTLSHNLNIDE-EETRNILDELCEE----VCHRLKSSEKFGKTLTL 291
>gi|218780742|ref|YP_002432060.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
gi|254781919|sp|B8FBE8.1|DPO4_DESAA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|218762126|gb|ACL04592.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
Length = 396
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D +L G I +R Q+ T SAGIA NK++AK+AS + KP VP
Sbjct: 109 DVTSSTRLFGSGEEIAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPAD 168
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+ LD LPI ++ +G L + LGV T+ D+ K +++ L ++G N G ++
Sbjct: 169 QTQEFLDPLPISRLWGVGPASRNKLIS-LGVKTIRDVRKLTQEMLSANFGRN-GEVIYAF 226
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
ARG+ V+ KS G +F R + T+ W+ L E ++ R+
Sbjct: 227 ARGMDDRPVEPPGAAKSIGREITF--DRNVYTLEEAYKWMLFLSERVARRM 275
>gi|296449696|ref|ZP_06891466.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
gi|296261420|gb|EFH08245.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
Length = 365
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEENAQDFLDKLPVNKF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 185 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 243 RKSVGAETTLSHNLNIDE-EETRNILDELCEE----VCHRLKSSEKFGKTLTL 290
>gi|378956298|ref|YP_005213785.1| DNA damage-inducible protein [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|438128284|ref|ZP_20873092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|357206909|gb|AET54955.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|434942122|gb|ELL48469.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
Length = 351
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKTPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEYLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>gi|445382141|ref|ZP_21427208.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
gi|445394949|ref|ZP_21428942.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748710|gb|ELW73666.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748845|gb|ELW73795.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
Length = 367
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 189 LPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEMTLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VRPNRVRKSIGSERTY 262
>gi|322783253|gb|EFZ10839.1| hypothetical protein SINV_80489 [Solenopsis invicta]
Length = 577
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R L G I E+R ++ +E TCSAGIAHNK+LAKLA +NKP QQT +
Sbjct: 160 CPCGCHTR---LMIGSKIAAEIRNRIYEELHLTCSAGIAHNKLLAKLAGSLNKPNQQTLI 216
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
S LL ++ + K+ +G K T L + TV DL + + L+ G +
Sbjct: 217 FPCSGPMLLSTIGSVSKIPGVGQK-TTELLLSNNIRTVDDLRRLPLENLELKIGVDLARR 275
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
L + A GI V+ +S G F +++ VA V+ L L L+E D
Sbjct: 276 LKDNAEGIDDTVVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED 330
>gi|254974524|ref|ZP_05270996.1| DNA polymerase IV [Clostridium difficile QCD-66c26]
gi|255313647|ref|ZP_05355230.1| DNA polymerase IV [Clostridium difficile QCD-76w55]
gi|255516331|ref|ZP_05384007.1| DNA polymerase IV [Clostridium difficile QCD-97b34]
gi|255649431|ref|ZP_05396333.1| DNA polymerase IV [Clostridium difficile QCD-37x79]
gi|260682597|ref|YP_003213882.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260686197|ref|YP_003217330.1| DNA polymerase IV [Clostridium difficile R20291]
gi|306519510|ref|ZP_07405857.1| DNA polymerase IV [Clostridium difficile QCD-32g58]
gi|384360178|ref|YP_006198030.1| DNA polymerase IV [Clostridium difficile BI1]
gi|260208760|emb|CBA61621.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260212213|emb|CBE02909.1| DNA polymerase IV [Clostridium difficile R20291]
Length = 365
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 185 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 243 RKSVGAETTLSHNLDIDE-EETRNILDELCEE----VCHRLKSSEKFGKTLTL 290
>gi|372268863|ref|ZP_09504911.1| DNA-directed DNA polymerase [Alteromonas sp. S89]
Length = 304
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R +V ++ T SAG+A NK LAK+AS KP T + ++V+ + LPI
Sbjct: 63 ATLIAQEIRARVQQDLGITISAGVAPNKFLAKIASDWQKPDGLTVIHPNAVEDFVLRLPI 122
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
KK+ +G +Q + G+ T DL ++S+ +L + YG G L+ + RGI +V
Sbjct: 123 KKIHGVGRVTAEKMQRQ-GIRTCSDLRRYSQIELAQKYG-KFGNRLYQLCRGIDDRKVS- 179
Query: 176 RLLPKSHGSGKSFPGPRALK----TVASVQHWLNQLCEELSERL 215
S G+ KS R + T+ S Q + L L ER+
Sbjct: 180 -----SDGARKSVSVERTFRDDLITLESWQKEMIHLYGRLQERM 218
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPYGLTLILPEDAVGILAS 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSIGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|335419336|ref|ZP_08550391.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
gi|335420991|ref|ZP_08552021.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
gi|334893165|gb|EGM31383.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
gi|334896953|gb|EGM35095.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
Length = 365
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R ++L+ T T SAGIA NK LAK+AS KP Q V V L LPI K+ +G
Sbjct: 137 IRAEILEVTGLTASAGIAPNKFLAKIASDWRKPNGQFVVTPKRVDAFLLPLPIGKVPGVG 196
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
K+ L L V TVGDL F + +L + YG G L+ +ARGI VQ
Sbjct: 197 PKMKEKLAA-LDVHTVGDLRAFEQAELVKRYG-RWGRRLYELARGIDERPVQ 246
>gi|357639281|ref|ZP_09137154.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|418417287|ref|ZP_12990483.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
gi|357587735|gb|EHJ57143.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|410871763|gb|EKS19709.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
Length = 364
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 70 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 129
E TCSAG+++NK LAKLAS KP T V + L +LPI+K +G K L
Sbjct: 146 ELHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDAQEFLKALPIEKFHGVGKKSVEKL 205
Query: 130 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 189
+E+GV T DLL SE L + +G G L+ ARGI V+ + KS GS +++
Sbjct: 206 -HEMGVFTGEDLLNISEMTLIDQFG-CFGYDLFRKARGIHYSPVKPNRIRKSIGSERTY- 262
Query: 190 GPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 231
A + + + E+S ER+ LE+N +I L L
Sbjct: 263 --------AKLLYQDEDVKTEISHNVERVVKTLEKNGKIGKVLVL 299
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|306836469|ref|ZP_07469442.1| DNA-directed DNA polymerase IV [Corynebacterium accolens ATCC
49726]
gi|304567632|gb|EFM43224.1| DNA-directed DNA polymerase IV [Corynebacterium accolens ATCC
49726]
Length = 493
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 17/230 (7%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
LR + +ET CS G K AK+ SG KP +P +L LP+ K+ +G
Sbjct: 160 LRALIREETGLPCSIGAGSGKQFAKIGSGEAKPDGTYVIPADKQLEMLHPLPVGKLWGVG 219
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
L+ +GV T+G L ++ +++ S G G LW +A+GI EV R + K
Sbjct: 220 PVTEAKLKG-IGVETIGALAAMTQKEVEISIGSVVGLQLWQLAQGIDDREVAPRAISKQI 278
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 242
+ ++ P+ L TVA V + + E RL D + + T+ L + F
Sbjct: 279 STEHTY--PKDLLTVADVDAAITRAAEGAHRRLLKDGRGVRTV--TVKLRMADF------ 328
Query: 243 SRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG-VKTQGSHYSG 291
S+S L Y T ++ T F+ L + G ++ G YSG
Sbjct: 329 ---HIESRSTTLAYATDDLEVLTAAAFK--LARYPDELGPIRLVGVSYSG 373
>gi|456987481|gb|EMG22781.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 285
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K ++KLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL S D+L + +G G + +
Sbjct: 169 DDVISFIDPLPVSSFHGV-GKVTARKMKELGIYTGKDLRTKSIDELVQHFG-KMGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG VQ+ KS G+ +F
Sbjct: 227 ISRGEDERMVQSSRERKSLGAESTF 251
>gi|440229635|ref|YP_007343428.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Serratia marcescens FGI94]
gi|440051340|gb|AGB81243.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Serratia marcescens FGI94]
Length = 354
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS +NKP Q +P + V L LP+ K
Sbjct: 121 LIAEEIRQAIFDELQLTASAGVAPIKFLAKIASDLNKPNGQYVIPPAQVGAFLQQLPLGK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L+ ELG+ T D+ ++ L + +G G LW ++GI +V +
Sbjct: 181 IPGVGKVTAKRLE-ELGLHTCADVQRYDLAALLKRFG-KFGRVLWERSQGIDERQVSSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL-SERLCSDLE 220
L KS G ++ A + W CE L ++L +LE
Sbjct: 239 LRKSVGVERTL--------AADIHDWAE--CEALIVDKLYPELE 272
>gi|418669590|ref|ZP_13230970.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|421120235|ref|ZP_15580547.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. Brem
329]
gi|410346725|gb|EKO97668.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. Brem
329]
gi|410754665|gb|EKR16314.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 362
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K ++KLAS NKP T V
Sbjct: 109 LDVTFNKKNIPYAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL S D+L + +G G + +
Sbjct: 169 DDVISFIDPLPVSSFHGV-GKVTARKMKELGIYTGKDLRTKSIDELVQHFG-KMGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG VQ+ KS G+ +F
Sbjct: 227 ISRGEDERMVQSSRERKSLGAENTF 251
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PG-AGKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 237
>gi|408491441|ref|YP_006867810.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
gi|408468716|gb|AFU69060.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
Length = 365
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 19/229 (8%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ E+R ++ T SAGI+ NK +AK+AS +NKP Q T+P V L++L I+K
Sbjct: 126 ILAREIREKIKDRTGLNASAGISINKFIAKIASDINKPNGQKTIPPEDVIDFLETLDIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ LG+ T DL + + LQ+ +G +G +N+ RG+ +V+
Sbjct: 186 FHGV-GKVTQEKMYGLGIFTGVDLKLKTLEYLQDHFG-KSGLHYFNVVRGVHLSDVKPSR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS G+ ++F K ++S + L +L E+++E + L+ ++ T+TL K
Sbjct: 244 IRKSLGAERTFS-----KNISSEIYMLEKL-EDIAEEVERRLKGSRVAGKTITLK---LK 294
Query: 238 SSDSDSRKKFPSKSCPLRY---GTAKIQEDTFN-LFQAGLREFLGSFGV 282
+SD + + ++S L++ A I E+T LFQ +++ + G+
Sbjct: 295 TSDFNIQ----TRSKTLKFFISSKALIMEETKALLFQEPIKDSIRLLGI 339
>gi|238764545|ref|ZP_04625492.1| DNA polymerase IV [Yersinia kristensenii ATCC 33638]
gi|238697247|gb|EEP90017.1| DNA polymerase IV [Yersinia kristensenii ATCC 33638]
Length = 352
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQSIAMELNLTASAGIAPVKFLAKIASDLNKPNGQYVITPDKVLPFLHDLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G LQ ELG+ T D+ + + +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQHYPQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVERTL--------AEDIHDW--ESCELLIEKLYIELETRLR 275
>gi|294827665|ref|NP_710684.2| DNA polymerase IV [Leptospira interrogans serovar Lai str. 56601]
gi|386072896|ref|YP_005987213.1| DNA polymerase IV [Leptospira interrogans serovar Lai str. IPAV]
gi|418690513|ref|ZP_13251626.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. FPW2026]
gi|300669635|sp|Q8F8Q2.2|DPO4_LEPIN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|293385508|gb|AAN47702.2| DNA polymerase IV [Leptospira interrogans serovar Lai str. 56601]
gi|353456685|gb|AER01230.1| DNA polymerase IV [Leptospira interrogans serovar Lai str. IPAV]
gi|400360318|gb|EJP16293.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. FPW2026]
Length = 362
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K ++KLAS NKP T V
Sbjct: 109 LDVTFNKKNIPYAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL S D+L + +G G + +
Sbjct: 169 DDVISFIDPLPVSSFHGV-GKVTARKMKELGIYTGKDLRTKSIDELVQHFG-KMGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG VQ+ KS G+ +F
Sbjct: 227 ISRGEDERMVQSSRERKSLGAESTF 251
>gi|91774364|ref|YP_544120.1| DNA-directed DNA polymerase [Methylobacillus flagellatus KT]
gi|91708351|gb|ABE48279.1| DNA-directed DNA polymerase [Methylobacillus flagellatus KT]
Length = 385
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ L+ V + T TCS GIA NK+LAK+AS ++KP T + + + LP +K+
Sbjct: 146 LAQRLKAAVQEATGLTCSIGIATNKLLAKIASDLDKPDGLTIIDEQAFHTRIWPLPARKI 205
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K T L+ +LG+ T+ DL LQE++G + WL +ARG V
Sbjct: 206 NGIGPKAATKLE-KLGIHTIADLAMVDLALLQENFGQSYAHWLMRVARGQDDRPVVTTST 264
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
PKS +F R + + L L ER+ +DL+ +T+ +
Sbjct: 265 PKSMSRETTF--ERDMHARQD-KRQLGMAFTSLCERVANDLQHKGYFGYTVGI 314
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSIGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|345305688|ref|XP_001509638.2| PREDICTED: DNA polymerase iota-like [Ornithorhynchus anatinus]
Length = 831
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + T AG+A NK+L+KL SG KP QQT + S + L+ S
Sbjct: 288 LLIGSQIAAEMREAIHSRLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLISS 347
Query: 113 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L IK+M +G K L++ LGV++V DL FS D L++ G + + ++ G
Sbjct: 348 LDHIKQMPGIGFKTTKRLES-LGVSSVHDLQTFSPDILEKELGISVAQRIQKLSFGEDNS 406
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S S R T + + +L L ER+ D R HT+ L
Sbjct: 407 PVTPSGPPQSFSEEDSI---RKCSTEVDAKKKIEELLTNLLERVYKD----GRKPHTIRL 459
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
F + S +R+ S+ CP+
Sbjct: 460 TIRRFSAEKSFNRE---SRQCPI 479
>gi|88801750|ref|ZP_01117278.1| DNA polymerase IV [Polaribacter irgensii 23-P]
gi|88782408|gb|EAR13585.1| DNA polymerase IV [Polaribacter irgensii 23-P]
Length = 360
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 6/179 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ E SAGI+ NK +AK+AS +NKP Q T+ V L +LP+ K
Sbjct: 126 LIAVEIRKRIYDEIGLRASAGISINKFIAKVASDINKPNGQKTINPEEVIEFLAALPVNK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ T+ LG+ T DL K ++L + +G +G ++I RGI V+
Sbjct: 186 FYGV-GKVTTAKMYNLGIFTGNDLKKKPLEELMKLFG-KSGAHYYHIVRGIHNSAVKPNR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 236
+ KS + ++F + + + L Q+ EEL R+ + K I TL + S F
Sbjct: 244 IRKSIAAERTF--SENISSEIFMIERLEQIAEELERRMKKTDTKGKTI--TLKIKYSDF 298
>gi|319892936|ref|YP_004149811.1| DNA polymerase IV [Staphylococcus pseudintermedius HKU10-03]
gi|386318846|ref|YP_006015009.1| DNA-directed DNA polymerase IV [Staphylococcus pseudintermedius
ED99]
gi|317162632|gb|ADV06175.1| DNA polymerase IV [Staphylococcus pseudintermedius HKU10-03]
gi|323464017|gb|ADX76170.1| DNA-directed DNA polymerase IV [Staphylococcus pseudintermedius
ED99]
Length = 356
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + +T+ T SAG+++NK LAKLASGMNKP T + + +V +L L I
Sbjct: 124 IAEYIRRDIYNQTQLTASAGVSYNKFLAKLASGMNKPNGLTVIDYQNVHDILMQLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + G+ DL + SE +L +G G L+ RG EV+A +
Sbjct: 184 PGI-GKASKEKMHAKGIYNGQDLYEKSERELVYLFG-KRGHQLYQRVRGYDDREVKAERI 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
K+ G+ ++F +L T + + Q E LSE++ LE+ + T+T+
Sbjct: 242 RKTVGAERTF----SLDT--NDDEEILQKIEMLSEKIAQRLEKMNQAGRTVTV 288
>gi|440902693|gb|ELR53451.1| DNA polymerase iota, partial [Bos grunniens mutus]
Length = 694
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 49 RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105
RD L L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S
Sbjct: 148 RDMLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPES 207
Query: 106 VKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+ L+ SL IK+M +G K L+ LG+++V DL F L++ G + + +
Sbjct: 208 SQELIHSLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKILEKELGISVAQRIQKL 266
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+ G V P+S SF + + + + +L L R+C Q+ R
Sbjct: 267 SFGEDDSPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGR 319
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
HT+ L + S +R+ S+ CP+
Sbjct: 320 KPHTIRLIIRRYSSEKHYNRE---SRQCPI 346
>gi|417765229|ref|ZP_12413194.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417783875|ref|ZP_12431588.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. C10069]
gi|400352531|gb|EJP04712.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|409952914|gb|EKO07420.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. C10069]
gi|455791044|gb|EMF42876.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar Lora
str. TE 1992]
Length = 362
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K ++KLAS NKP T V
Sbjct: 109 LDVTFNKKNIPYAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL S D+L + +G G + +
Sbjct: 169 DDVISFIDPLPVSSFYGV-GKVTARKMKELGIYTGKDLRTKSIDELVQHFG-KMGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG VQ+ KS G+ +F
Sbjct: 227 ISRGEDERMVQSSRERKSLGAESTF 251
>gi|355712656|gb|AES04422.1| polymerase , eta [Mustela putorius furo]
Length = 417
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 158 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 217
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL
Sbjct: 2 GSWLYAMCRGIEHDPVKPRKLPKTIGCSKNFPGKTALATQEQVQWWLLQLAHELEERLIK 61
Query: 218 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREF 276
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 62 DRNDNDRVATQLAVIIRV----QGDRRLSSTRRCCALTRYDAHKMSRDAFAVIRN----- 112
Query: 277 LGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 318
+ G+KT S +T + + A+K +C+ + F
Sbjct: 113 CNTSGIKTDWSP----PLTMVFLCATKFSTSAPSSCTDITTF 150
>gi|145523365|ref|XP_001447521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415032|emb|CAK80124.1| unnamed protein product [Paramecium tetraurelia]
Length = 521
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 49 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 108
+D LL L+ +R + ET++ CSAGI+ NKMLAKLAS NKP +QT + +
Sbjct: 168 QDHLLRRASLLCQNIRDAIYTETKYKCSAGISFNKMLAKLASATNKPNKQTIILECMLPE 227
Query: 109 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 168
+ ++ I K++ GGK+ +L E G+ TVG S +LQ +G + ++++ RG
Sbjct: 228 CISNIGINKIRGFGGKVQEALL-ESGLKTVGQAQTLSIYELQSLFG-DKAQYIYDKLRGY 285
Query: 169 SGEEVQARLLPKSHGSGKSFPGPRALKTVAS---VQHWLNQLCEELSERLCSDLEQNKRI 225
E V+ + K+ KS + +K +S + L + +++ R+ E + +
Sbjct: 286 DDEIVKKEVDLKN----KSILSLKNIKKTSSREVIIQSLELILHDITMRVTDYYEDSNLV 341
Query: 226 AHTLTLH 232
L +H
Sbjct: 342 PSVLVIH 348
>gi|45658878|ref|YP_002964.1| DNA polymerase IV [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|45602123|gb|AAS71601.1| DNA polymerase IV [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
Length = 364
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K ++KLAS NKP T V
Sbjct: 111 LDVTFNKKNIPFAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLP 170
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL S D+L + +G G + +
Sbjct: 171 DDVISFIDPLPVSSFHGV-GKVTARKMKELGIYTGKDLRTKSIDELVQHFG-KMGIYYYK 228
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG VQ+ KS G+ +F
Sbjct: 229 ISRGEDERMVQSSRERKSLGAESTF 253
>gi|86360880|ref|YP_472767.1| DNA polymerase IV [Rhizobium etli CFN 42]
gi|86284982|gb|ABC94040.1| DNA-directed DNA polymerase protein [Rhizobium etli CFN 42]
Length = 363
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + I E+R ++ T SAGI++NK LAK+AS +NKP Q +
Sbjct: 115 LDVTHNLKGMEIATEIALEIRARIKAITGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ +++LP+KK +G + + LG+ T DL + + L E +G +G + +
Sbjct: 175 RNGPAFVEALPVKKFHGVGPATAEKM-HRLGIDTGADLKGKTLEFLVEHFG-KSGPYFYG 232
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
IARGI +V+ + KS G+ +F
Sbjct: 233 IARGIDERQVKPNRVRKSVGAEDTF 257
>gi|417760761|ref|ZP_12408777.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000624]
gi|417773233|ref|ZP_12421116.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000621]
gi|418675579|ref|ZP_13236869.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000623]
gi|418711471|ref|ZP_13272235.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418724457|ref|ZP_13283266.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
12621]
gi|421085072|ref|ZP_15545927.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. HAI1594]
gi|421105262|ref|ZP_15565851.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|300669634|sp|Q72MY7.2|DPO4_LEPIC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|409943350|gb|EKN88951.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000624]
gi|409961778|gb|EKO25520.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
12621]
gi|410364940|gb|EKP20339.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432465|gb|EKP76821.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. HAI1594]
gi|410576900|gb|EKQ39899.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000621]
gi|410577443|gb|EKQ45314.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000623]
gi|410768392|gb|EKR43641.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|456824472|gb|EMF72909.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456972553|gb|EMG12921.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 362
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K ++KLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ ELG+ T DL S D+L + +G G + +
Sbjct: 169 DDVISFIDPLPVSSFHGV-GKVTARKMKELGIYTGKDLRTKSIDELVQHFG-KMGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG VQ+ KS G+ +F
Sbjct: 227 ISRGEDERMVQSSRERKSLGAESTF 251
>gi|373458216|ref|ZP_09549983.1| DNA polymerase IV [Caldithrix abyssi DSM 13497]
gi|371719880|gb|EHO41651.1| DNA polymerase IV [Caldithrix abyssi DSM 13497]
Length = 406
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 15/200 (7%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E++ +V + + S GI NK++A++ASG+ KP VP + L LP+ +
Sbjct: 125 VAEEIKAEVWRRVGVSLSVGIGSNKVIARIASGLKKPGGVVEVPAGKEREFLAGLPVDAL 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G L +LG+ VG L + + +++ +G N G +W+ ARG V A++
Sbjct: 185 PGIGPMAREKL-FDLGIFKVGQLARLPKGIMEQLFGKN-GIKIWHFARGEDDRPVAAKIF 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
PK SF A + V+ L LCE + ++L S+ LT A A K
Sbjct: 243 PKQISRETSFEEDTA--DLELVRGTLQYLCERIGKKLRSE---------ELTCRALAIKI 291
Query: 239 SDSDSRKKFPSKSCPLRYGT 258
SD KF + S L + T
Sbjct: 292 KYSDF--KFHTASARLPFAT 309
>gi|417412383|gb|JAA52580.1| Putative dna polymerase iota/dna damage inducible protein, partial
[Desmodus rotundus]
Length = 703
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 98/211 (46%), Gaps = 14/211 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D HR L+ G + E+R + T AG+A NK+LAKL SG+ KP QQT +
Sbjct: 155 DVLHRRLLV--GSQMAAEMREAMCDRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPE 212
Query: 105 SVKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
S + L+ SL IKKM +G K L+ LGV++V DL FS L++ G + +
Sbjct: 213 SSQDLIHSLKHIKKMPGIGYKTARRLE-ALGVSSVQDLQTFSSKVLEKELGISVAQRIQK 271
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
++ G V LP+S SF + + + + +L L R+C Q+
Sbjct: 272 LSFGEDNSPVTPSGLPQSFSEEDSF---KKCSSEVEAKSKIEELLASLLNRVC----QDG 324
Query: 224 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
R HT+ L S R+ S+ CP+
Sbjct: 325 RKPHTVRLTIRRCSSERHCGRE---SRQCPV 352
>gi|417842070|ref|ZP_12488165.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
gi|341947850|gb|EGT74491.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
Length = 355
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 4/171 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H K I E+R + E T SAG+A K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V+ + +L + K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVEEFIKTLSLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ GI EVQA KS G ++ + TV LN L +EL RL
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--IENIHTVEQALALLNNLYDELIRRL 277
>gi|329119433|ref|ZP_08248118.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464366|gb|EGF10666.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
Length = 358
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L ET T SAGIA NK LAK+AS +KP Q ++P ++ L +LP+ K+
Sbjct: 123 IARLIRADILAETGLTASAGIAPNKFLAKIASDWHKPDGQFSLPPQKIEAFLAALPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ + LG+ T GDL + +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLQKMHRLGLKTAGDLRRMERGELANLFG-KWGYRLYDLARGIDNRPVKA 237
>gi|421887936|ref|ZP_16319060.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
gi|378966697|emb|CCF95808.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
Length = 362
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPQQVDAFVA 179
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 238 PVQPSQIRKSVSVEETYATD--LRTLDDCQRELTVLVDQLAARV 279
>gi|310288038|ref|YP_003939297.1| DNA polymerase IV [Bifidobacterium bifidum S17]
gi|309251975|gb|ADO53723.1| DNA polymerase IV [Bifidobacterium bifidum S17]
Length = 430
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 10/171 (5%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R +V TCS G+A NK++AK+AS KP +P + + +P++ + +G
Sbjct: 144 IRQEVASRFHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIG 203
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKS 181
L L E GV TV DL K SE L + G T L+ ARG+ G V KS
Sbjct: 204 PSLERRLA-EWGVKTVADLAKMSEQTLTTAVGSQTMAHGLYMAARGMDGRAVTPYTPEKS 262
Query: 182 HGSGKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS +FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 263 IGSESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 306
>gi|421540704|ref|ZP_15986846.1| DNA polymerase IV [Neisseria meningitidis 93004]
gi|402318254|gb|EJU53778.1| DNA polymerase IV [Neisseria meningitidis 93004]
Length = 352
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + + E+R + ET T SAGIA NK LAK+AS KP Q +P
Sbjct: 108 LDVTHNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V L++LP+ K+ + GK+ LG+ T GDL +F +L +G G L++
Sbjct: 168 HKVMAFLETLPLGKIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYD 225
Query: 164 IARGISGEEVQA 175
+ RG V+A
Sbjct: 226 LVRGTDERPVKA 237
>gi|325270034|ref|ZP_08136642.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
gi|324987619|gb|EGC19594.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
Length = 364
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E++ ++L T T SAG+++NK+LAK++S M KP TV
Sbjct: 106 LDVTENKKGMELAVDIAREIKQKILDRTSLTASAGVSYNKLLAKISSDMRKPDGLFTVHP 165
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
G + SLP++K+ +G K + +++GV T G L + S L + +G G ++
Sbjct: 166 DRALGFIGSLPVEKLWGIGPKTAKRM-HDMGVFTGGQLRQVSRRHLVQVFG-KMGHVYYD 223
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRAL--KTVASVQHWLNQLCEELSE 213
+RGI V A KS G ++F + K + + H + +L E L+
Sbjct: 224 FSRGIDNRRVVAFHERKSVGCERTFLEDIHVESKIIIELYHIVLELVERLAR 275
>gi|110803706|ref|YP_698855.1| DNA polymerase IV [Clostridium perfringens SM101]
gi|123047351|sp|Q0SSQ2.1|DPO4_CLOPS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110684207|gb|ABG87577.1| DNA polymerase IV [Clostridium perfringens SM101]
Length = 359
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E++ ++ KE T SAG++ NK LAK+AS KP T + + K + LPI K
Sbjct: 124 LIALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRKLPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +GV DLL FSE +L G + G L+ ARGI +V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLGFSEKELIGILG-DRGKILYEFARGIDNRQVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS GK ++ + + L+++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIEEMIEILDKIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V L++L I+K
Sbjct: 126 LIAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPNGQKTVNPEDVLPFLEALDIRK 185
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ T DL + + L +G +G + +++ RG+ EV+
Sbjct: 186 FHGV-GKVTAEKMYQLGIFTGTDLKSKTIEFLSTHFG-KSGGYYYHVVRGVHTSEVKPNR 243
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ KS + ++F L + + L + EE+S RL
Sbjct: 244 IRKSLAAERTF--SENLSSEIFMLEKLQHIAEEVSRRL 279
>gi|339624645|ref|ZP_08660434.1| nucleotidyltransferase/DNA polymerase for DNA repair
[Fructobacillus fructosus KCTC 3544]
Length = 364
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +LR ++ +ET+ TCS G+++NK+LAKL S +KP T +P + + +LPIK
Sbjct: 131 LAAQLRHRIWQETQLTCSVGVSYNKVLAKLGSEHHKPNGVTVIPHELAQDFVLNLPIKDF 190
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ +G K + ++GVT DL S D+L+ +G + G L+ AR V+ R +
Sbjct: 191 RGVGKKTLEKFE-KMGVTDGRDLYAMSLDELRVQFG-SFGDVLYWQARATHFSPVKDRSV 248
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
+S G +F AL + V+ + L+E++ ++++ K + TLT+ +
Sbjct: 249 RQSVGKESTF--ELALHDRSEVE----MTFKTLAEKVVLNMKKKKLLGRTLTV---KIRD 299
Query: 239 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 290
D ++ K +++ P A + +F + +F ++ G +S
Sbjct: 300 DDFKTQTKGMTQAVPFELDAAFLARQAMLIFDEA---YPDNFSIRLLGLTFS 348
>gi|328780415|ref|XP_003249798.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Apis
mellifera]
Length = 564
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 35 ATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 94
A+ +E C C A L I E+R ++ K+ TCSAGIAHNK+LAKL ++K
Sbjct: 152 ASEEECPCGCHAR-----LIIASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHK 206
Query: 95 PAQQTTVPFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 153
P QQT + S LL ++ + K+ +G K T L + T+ DL K S + L+
Sbjct: 207 PNQQTLIFPCSAPMLLSNIGSVSKIPGVGQK-TTQLLMSNNIKTIDDLRKTSLETLEMKI 265
Query: 154 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
G + L + A GI V+ +S G F +++ VA V+ L L L+E
Sbjct: 266 GIDLARKLKDNAEGIDETVVKPTGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTE 322
Query: 214 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
D +A LT+ F S S R+ ++ C L
Sbjct: 323 LAMED--GRIPVAMRLTVRKHDFNKSSSGKRE---TRQCAL 358
>gi|167038401|ref|YP_001665979.1| DNA polymerase IV [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038865|ref|YP_001661850.1| DNA polymerase IV [Thermoanaerobacter sp. X514]
gi|256751141|ref|ZP_05492023.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913550|ref|ZP_07130867.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307723435|ref|YP_003903186.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|320116805|ref|YP_004186964.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853105|gb|ABY91514.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
gi|166857235|gb|ABY95643.1| DNA-directed DNA polymerase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256750047|gb|EEU63069.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300890235|gb|EFK85380.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307580496|gb|ADN53895.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|319929896|gb|ADV80581.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 389
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 16/211 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I E++ +V + T T SAG+++NK LAKLAS NKP + + +L LP+ K
Sbjct: 118 IIALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIPDILKPLPVSK 177
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G K L++ +G+ T+GDLLK S++ L E +G G ++ RGI V+
Sbjct: 178 VYGIGQKSEERLKS-MGINTIGDLLKLSQENLVEIFG-KVGVEIYLRIRGIDERPVETMR 235
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G K+ L+ + L + + S+ + +L + + A T+T+ K
Sbjct: 236 EIKSIGKEKT------LEKDTKDKKLLLRYAKLFSDIISEELFRERLYARTVTVK---IK 286
Query: 238 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNL 268
+SD K + + +R G ED +++
Sbjct: 287 TSDFTVHTKSKTLNKYIRLG-----EDIYDV 312
>gi|195330788|ref|XP_002032085.1| GM23708 [Drosophila sechellia]
gi|194121028|gb|EDW43071.1| GM23708 [Drosophila sechellia]
Length = 735
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R LA G I E+R ++ TC AGIA+NK+LAKL +KP QQT +
Sbjct: 153 CDCGCAQR---LAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVL 209
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ + + L +K++ +G K L E G+++V L + D +++ +GF T T
Sbjct: 210 VSTYAEQFMRELGDLKRITGIGQK-TQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATR 268
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L ++A G V+ PK+ G + P +++T V+ L + L E++ D
Sbjct: 269 LRDLAFGRDTSSVRPSGKPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGR 325
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 262
I L S KSS ++++ F + CP G +K+Q
Sbjct: 326 VPIAIKVVLRKFDSQKKSSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|389842113|ref|YP_006344197.1| DNA polymerase IV [Cronobacter sakazakii ES15]
gi|387852589|gb|AFK00687.1| DNA polymerase IV [Cronobacter sakazakii ES15]
Length = 356
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H L+ E+R + E + T SAGIA K LAK+AS +NKP Q +
Sbjct: 113 DVTHSPHCYGSATLMAKEIRQTIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPE 172
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V G L +LP+ K+ +G L++ LG+ T D+ K L + +G G LW
Sbjct: 173 EVPGFLRTLPLGKIPGVGKVTAAKLES-LGLRTCEDVQKSDLAALLKRFG-KFGRVLWER 230
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
++GI E+ + KS G ++ + W CE + ERL +LE+
Sbjct: 231 SQGIDDREISSDRQRKSVGVERTL--------AEDIHEWAE--CEAIVERLYPELERR 278
>gi|357235923|ref|ZP_09123266.1| DNA polymerase IV [Streptococcus criceti HS-6]
gi|356883905|gb|EHI74105.1| DNA polymerase IV [Streptococcus criceti HS-6]
Length = 365
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + +++ + +E + TCSAG+++NK LAKLAS +KP T + + L
Sbjct: 129 IKSAVKLAKMIQLDIWQEVQLTCSAGVSYNKFLAKLASDYDKPHGLTLILPDEAEDFLKG 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K + GK +ELGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFYGV-GKQSVKRLHELGVYTGQDLLEIPEMTLIDHFG-RFGYDLYRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VKPNRVRKSIGSERTY 262
>gi|327312331|ref|YP_004327768.1| DNA polymerase IV [Prevotella denticola F0289]
gi|326945721|gb|AEA21606.1| DNA polymerase IV [Prevotella denticola F0289]
Length = 359
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D K + V I E++ ++L T T SAGI++NK+LAK++S M KP TV
Sbjct: 107 DVTENKKGMDLAVDIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVHPD 166
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
G + SLP++K+ +G K + +++GV T G L + S L + +G G ++
Sbjct: 167 RALGFVGSLPVEKLWGVGPKTAKRM-HDMGVFTGGQLRQVSRRHLVQVFG-KMGNIYYDF 224
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRAL--KTVASVQHWLNQLCEELSE 213
+RGI V A KS G ++F + K + + H + +L E L+
Sbjct: 225 SRGIDNRPVVAVHERKSVGCERTFLEDLHVGSKIIIELYHIVLELVERLAR 275
>gi|422002069|ref|ZP_16349308.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
gi|417259281|gb|EKT88659.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
Length = 360
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNMPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ +LG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPVGSFHGV-GKVTAQKMKKLGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|388567220|ref|ZP_10153657.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
gi|388265603|gb|EIK91156.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
Length = 423
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
G ++ ++ + T TCS G+A NK+LAK+AS NKP + V ++ L+ LP
Sbjct: 161 GRVLARLIQKSIFDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVMPEDLQRLIWPLPC 220
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K+ +G K LQ+ G+ T+GDL D L ++G + G WL +A G V
Sbjct: 221 RKVNGVGPKADARLQSH-GIHTIGDLAAREPDWLVANFGKSYGAWLHEVAWGRDDRPVVT 279
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
P +F R L V + L + EL E++ SDL++ +A T+ +
Sbjct: 280 ESEPVGMSRETTF--ERDLHAVHD-RAELGAILTELCEQVASDLQRKGYLARTIGI 332
>gi|325103858|ref|YP_004273512.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
gi|324972706|gb|ADY51690.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
Length = 366
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I +++ ++ E + T SAGI+ +K +AK+AS KP T + S + +++
Sbjct: 124 IGSAIDIAKKIKQEIKDELDLTASAGISTSKFIAKIASDFQKPDGLTFIGPSKIVPFIEA 183
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K + GK+ + +LG+ DL K+ ++ L + +G +G + + I RGI
Sbjct: 184 LPIEKFFGV-GKVTAAKMKKLGIFNGADLKKWKQNDLTKQFG-KSGKFFYEIVRGIDNRS 241
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS G+ +F + ++ LN+ ++LSER+ L + T+TL
Sbjct: 242 VKPNRISKSVGAEDTFEN-----DIDDIE-ILNEELQKLSERVSRRLNDKEFKGKTMTL 294
>gi|418753975|ref|ZP_13310210.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
gi|409965705|gb|EKO33567.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
Length = 360
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E+R ++ K TE T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V +D LP+ + GK+ +LG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPVGSFHGV-GKVTAQKMKKLGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 6/185 (3%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ + I +++ + E + T SAG++ NK +AK+AS MNKP T +P V+ ++S
Sbjct: 119 IGSAIGIAKQIKAAIRDELQLTASAGVSINKFVAKIASDMNKPDGLTFIPPDKVEAFMES 178
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP+ K + GK+ N L + T DL K +E +L +G G++ + I RGI
Sbjct: 179 LPVNKFHGV-GKVTAEKMNTLNLFTGADLKKLTEVELVRLFG-KPGSFYYKIVRGIDDRP 236
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ KS + +F L ++ L++L ++ RL + K I TL +
Sbjct: 237 VEPNRETKSISAEDTFLND--LDNPVEMKEQLDRLAAVVTNRLQQYELKGKTI--TLKIR 292
Query: 233 ASAFK 237
S FK
Sbjct: 293 YSDFK 297
>gi|390944951|ref|YP_006408712.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
gi|390418379|gb|AFL85957.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
Length = 360
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E+R ++ +T SAGI++NK LAK+AS +NKP Q + + L+ LPI+K
Sbjct: 123 LLAKEIRAKIKSQTGLNASAGISYNKFLAKIASDINKPNGQAVILPKEAEAFLEKLPIEK 182
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ + G+ DL ++S L + +G +G +NI RGI EVQ
Sbjct: 183 FFGI-GKVTAEKMKKFGIHQGKDLKEYSLQFLTKKFG-KSGLHFYNIVRGIHMSEVQPNR 240
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS + +F + L T + L + EEL R +E+ + T+TL
Sbjct: 241 ERKSISAENTF--EKDLPTQVEWEEALKGVFEELMRR----IEKTRIKGRTITL 288
>gi|345016684|ref|YP_004819037.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032027|gb|AEM77753.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
Length = 389
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I E++ +V + T T SAG+++NK LAKLAS NKP + + +L LP+ K
Sbjct: 118 IIALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIPDILKPLPVSK 177
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G K L+ +G+ T+ DLLK S++ L E +G G ++N RGI V+
Sbjct: 178 VYGIGEKSEQKLKA-MGINTIDDLLKLSQESLIEIFG-KLGLEIYNRIRGIDERPVETMR 235
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G K+ + K + H++ + +SE L + + A T+T+
Sbjct: 236 EIKSIGKEKTL--EKDTKDKKLLLHYVKLFSDIISEELV----RERLYARTVTV 283
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +L +G G L+N ARGI V++ +
Sbjct: 184 PGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRI 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 242 RKSVGTERTFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|186471995|ref|YP_001859337.1| DNA-directed DNA polymerase [Burkholderia phymatum STM815]
gi|184194327|gb|ACC72291.1| DNA-directed DNA polymerase [Burkholderia phymatum STM815]
Length = 384
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 10/176 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I + ++ V T TCS +A NK+LAK+ S ++KP T + + + L +K+
Sbjct: 143 IGSRIKEAVRAATGLTCSICVAPNKLLAKIGSELDKPDGLTILTPEDIPSRIWPLAARKI 202
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L LG+ TVGDL + D LQ ++G TWL ++ARGI V
Sbjct: 203 NGIGPKASERLAT-LGINTVGDLAHAAPDLLQSNFGLKYATWLTHVARGIDERPVVVESE 261
Query: 179 PKSHGSGKSFP---GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
PKS +F PR + ++ +LC ++E DL++ + HT+ +
Sbjct: 262 PKSMSRETTFERDLHPRHDR--PALSESFTRLCVRVAE----DLQRKGYVGHTIGI 311
>gi|298246786|ref|ZP_06970591.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
gi|297549445|gb|EFH83311.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
Length = 362
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 2/173 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H + + E++ ++ + T+ T SAG+++NK +AKLAS KP T +
Sbjct: 111 LDVTHNKFNIPSATHVAREIKQRIYEHTQLTASAGVSYNKFIAKLASDYKKPDGLTVITP 170
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
L+SLPI+K +G + Q E G+ T DL SE++L+E + G+ +
Sbjct: 171 QQASRFLESLPIQKFFGVGRVTASRFQ-EHGIHTGADLKSLSEERLRELFQ-ERGSMFYR 228
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
RG V+ + KS G + AL A V L L E++ RL
Sbjct: 229 YVRGEDERSVEPIRVRKSVGKETTLAEDLALAEHAEVIRILTDLAEKVERRLV 281
>gi|385784018|ref|YP_005760191.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|418413694|ref|ZP_12986910.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339894274|emb|CCB53543.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|410877332|gb|EKS25224.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 359
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +L +G G L+N ARGI V++ +
Sbjct: 184 PGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRI 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 242 RKSVGTERTFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|238795607|ref|ZP_04639122.1| DNA polymerase IV [Yersinia mollaretii ATCC 43969]
gi|238720726|gb|EEQ12527.1| DNA polymerase IV [Yersinia mollaretii ATCC 43969]
Length = 352
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 53 LAC---GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
L C LI E+R + E T SAGIA K LAK+AS +NKP Q + V
Sbjct: 113 LVCSGSATLIAQEIRQSIADELHLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ E+G+ T D+ + + +L + +G G LW + GI
Sbjct: 173 LHDLPLSKIPGVGKVTAKRLQ-EVGLVTCSDVQNYPQAELLKRFG-KFGHVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
E+ L KS G ++ + W + CE L E+L ++LE R
Sbjct: 231 EREISPDRLRKSVGVERTL--------AEDIHDWDS--CESLIEQLYAELETRLR 275
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|365848138|ref|ZP_09388617.1| DNA polymerase IV [Yokenella regensburgei ATCC 43003]
gi|364571339|gb|EHM48930.1| DNA polymerase IV [Yokenella regensburgei ATCC 43003]
Length = 351
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L L+ E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +
Sbjct: 116 LGSATLMAQEIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPAFLKT 175
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LP+ K+ + GK+ + +G+ T D+ K L + +G G LW ++GI E
Sbjct: 176 LPLAKIPGV-GKVSAAKLESMGLRTCEDVQKSDLAMLLKRFG-KFGRVLWERSQGIDERE 233
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
+ + L KS G ++ + + W CE + ERL +LE+
Sbjct: 234 ISSERLRKSVGVERTL--------IEDIHDWAE--CEAIIERLYPELERR 273
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +L +G G L+N ARGI V++ +
Sbjct: 184 PGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRI 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 242 RKSVGTERTFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|421531833|ref|ZP_15978210.1| DNA polymerase IV, partial [Streptococcus agalactiae STIR-CD-17]
gi|403642934|gb|EJZ03734.1| DNA polymerase IV, partial [Streptococcus agalactiae STIR-CD-17]
Length = 253
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 28 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVG 87
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LGV T DLL SE L + +G G + ARGI+ V+ + KS
Sbjct: 88 KRSVEKL-HALGVYTGEDLLSLSEVSLIDMFG-RFGYDRYRKARGINASPVKPDRVRKSI 145
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 146 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 188
>gi|281351226|gb|EFB26810.1| hypothetical protein PANDA_002636 [Ailuropoda melanoleuca]
Length = 701
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + + + L+ S
Sbjct: 159 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVLIQS 218
Query: 113 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L +++M +G K L+ LG+++V DL FS L++ G + + ++ G
Sbjct: 219 LSHVREMPGIGYKTAKRLE-ALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 277
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 278 PVTPSGPPQSFSEEDSF---KKCSSEVEAKNKVEELLASLLNRVC----QDGRKPHTIRL 330
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
+ S + SR+ S+ CP+
Sbjct: 331 VIRRYSSENHCSRE---SRQCPI 350
>gi|303312081|ref|XP_003066052.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105714|gb|EER23907.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 1128
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR V ++T S GI N + AKLA KPA Q + +V + L ++++
Sbjct: 485 IAQTLRDSVKQKTGCDVSVGIGGNILQAKLALREAKPAGQFQLKPEAVLEFIGELTVQQL 544
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGV V D+ + S ++L S G TG LW+ ARGI +V +
Sbjct: 545 PGVAYSLGAKLE-ELGVKFVKDIRELSRERLTSSLGPKTGAKLWDYARGIDNADV-GDVA 602
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 233
P+ S + G R + T A V+ ++ LC+EL RL + + K++ + A
Sbjct: 603 PRKSVSAEINWGIRFV-TQAQVEEFVQSLCDELHRRLMENGVKGKQLTMRIMRRA 656
>gi|93117309|gb|ABE99572.1| DinB [Neisseria meningitidis]
Length = 335
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|399516084|ref|ZP_10757708.1| DNA polymerase IV [Leuconostoc pseudomesenteroides 4882]
gi|398649178|emb|CCJ65735.1| DNA polymerase IV [Leuconostoc pseudomesenteroides 4882]
Length = 361
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
G + E+R Q+LKET T S G++HNK+LAKL S NKP T + + LD L I
Sbjct: 128 GATLAAEIRHQILKETHLTSSIGVSHNKLLAKLGSEYNKPNGVTVINHENQLQFLDCLSI 187
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ +G K ++LG+T +L + S ++L+ +G G L+ ARG+ V+
Sbjct: 188 SAFRGVGKKTKEKF-DKLGITNGLELRQMSREELKTEFG-KMGEHLYWQARGVHFGAVEW 245
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ +S G ++F RAL+ +VQ +L L + + K + TL +
Sbjct: 246 QRQRQSVGKEETF--DRALRETNAVQIEFKKLVNS----LVMSMNRQKIVGRTLNI 295
>gi|384263521|ref|YP_005418710.1| Nucleotidyltransferase/DNA polymerase [Rhodospirillum photometricum
DSM 122]
gi|378404624|emb|CCG09740.1| Nucleotidyltransferase/DNA polymerase [Rhodospirillum photometricum
DSM 122]
Length = 349
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R ++ + T SAGI++ K LAK+AS +NKP Q +P + + LP+KK +G
Sbjct: 141 IRQRIREVTGLNASAGISYCKFLAKMASDLNKPNGQAVIPPARGPQFVAQLPVKKFHGIG 200
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+++ LG+ T DL S + L+ +G +G W + I+RGI V+ KS
Sbjct: 201 PATAAKMEH-LGILTGADLRAHSIEFLRAHFG-KSGGWYYQISRGIDDRPVEPHRERKSI 258
Query: 183 GSGKSFP 189
G+ +FP
Sbjct: 259 GAEDTFP 265
>gi|157147182|ref|YP_001454501.1| DNA polymerase IV [Citrobacter koseri ATCC BAA-895]
gi|189027658|sp|A8AKQ2.1|DPO4_CITK8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157084387|gb|ABV14065.1| hypothetical protein CKO_02960 [Citrobacter koseri ATCC BAA-895]
Length = 351
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAGIA K LAK+AS +NKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFLKTLPLGK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T D+ K+ L + +G G LW ++GI +V
Sbjct: 181 IPGV-GKVSAARLETMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDERDVNNER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + W CE + ERL +LE+
Sbjct: 239 LRKSIGVERTL--------AEDIHEWAE--CEAIIERLYPELERR 273
>gi|55821632|ref|YP_140074.1| DNA polymerase IV [Streptococcus thermophilus LMG 18311]
gi|81560203|sp|Q5M2Y5.1|DPO4_STRT2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55737617|gb|AAV61259.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus LMG
18311]
Length = 367
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 189 LPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VKPNRVRKSIGSERTY 262
>gi|386087258|ref|YP_006003132.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|386345357|ref|YP_006041521.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387910359|ref|YP_006340665.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
gi|312278971|gb|ADQ63628.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|339278818|emb|CCC20566.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387575294|gb|AFJ84000.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
Length = 367
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 189 LPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VKPNRVRKSIGSERTY 262
>gi|404406098|ref|ZP_10997682.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes sp. JC136]
Length = 353
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 4/159 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E++ ++ ET T SAGI+ NKMLAK+AS KP +P + + LP+++
Sbjct: 117 LVAREIKARIRAETGLTASAGISVNKMLAKIASDYRKPDGLFVIPPDRIDAFVAELPVER 176
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ G++ + LG+ T DL ++ E +L +G G + ARGI V
Sbjct: 177 FFGI-GEVTAEKMHALGIRTGADLRQWEELELVRHFG-KAGRSYYGYARGIDPRPVVPNR 234
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
+ KS G+ +F A + V + L Q+CEE+ RL
Sbjct: 235 IRKSLGAETTFEADTADREVLLGE--LEQVCEEVWRRLV 271
>gi|374596002|ref|ZP_09669006.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
gi|373870641|gb|EHQ02639.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
Length = 349
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L+ L ++K
Sbjct: 112 LIAREIREKIKNKTGLNASAGISVNKFIAKIASDINKPNGQKTINPEDVLEFLEKLQVRK 171
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ GK+ +LG+ DL + S + L E++G +G +N+ RGI EV+
Sbjct: 172 FHGV-GKVTAEKMYQLGIFNGFDLKQKSLEFLIENFG-KSGLHYYNVVRGIHLSEVKPNR 229
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
+ KS G+ ++F T S + ++ + + ++E + L+++K T+TL K
Sbjct: 230 IRKSLGAERTFD------TNISSEIFMLERLQNIAEEIERRLQKSKVAGKTVTL-----K 278
Query: 238 SSDSDSRKKFPSKSCP 253
SD + SK+ P
Sbjct: 279 IKYSDFTQHTRSKTLP 294
>gi|187929043|ref|YP_001899530.1| DNA polymerase IV [Ralstonia pickettii 12J]
gi|187725933|gb|ACD27098.1| DNA-directed DNA polymerase [Ralstonia pickettii 12J]
Length = 357
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V + +
Sbjct: 115 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDAFVA 174
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
LP+ ++ + GK+ + LG T GDL + D+LQ+ +G G L ++ RGI
Sbjct: 175 ELPVDRLFGV-GKVTAAKLRRLGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHR 232
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+VQ + KS +++ L+T+ Q L L E+L+ R+
Sbjct: 233 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELIILVEQLAARV 274
>gi|116493014|ref|YP_804749.1| nucleotidyltransferase/DNA polymerase for DNA repair [Pediococcus
pentosaceus ATCC 25745]
gi|116103164|gb|ABJ68307.1| Nucleotidyltransferase/DNA polymerase for DNA repair [Pediococcus
pentosaceus ATCC 25745]
Length = 374
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K L VLI E++ + ET+ TCS GI++NK LAK+AS +KP +
Sbjct: 123 LDVSEDKKGLGDAVLIAHEIQKVIFNETQLTCSTGISYNKFLAKMASEYSKPVGVAIIEK 182
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V L ++PI++ + +G K + +ELGV DL+K SE+ L +G G L+
Sbjct: 183 DDVAEFLKNIPIERFRGVGKKTVPKM-HELGVFQGADLIKMSENDLIHYFG-KFGYTLFR 240
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
RG V+ KS G +++ + L T V+ L + + L + + K
Sbjct: 241 WVRGQDDRPVEYLRERKSIGKEETY--GKLLTTEMEVEERLRVIAKNLFRAVLKRQKHGK 298
Query: 224 RIAHTL 229
I L
Sbjct: 299 TIVLKL 304
>gi|161528150|ref|YP_001581976.1| DNA-directed DNA polymerase [Nitrosopumilus maritimus SCM1]
gi|226738238|sp|A9A3A9.1|DPO4_NITMS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|160339451|gb|ABX12538.1| DNA-directed DNA polymerase [Nitrosopumilus maritimus SCM1]
Length = 364
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+++ + ++T+ +CS GI+ NK+++K+AS KP T V V+G L+SL I+ + +
Sbjct: 134 QIKNSIREKTKLSCSIGISPNKLISKIASDFQKPDGLTIVSPEKVEGFLESLKIRDIPGI 193
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K E+ + T+GD+ + L + +G +GT+++N RGI E V+ R
Sbjct: 194 GKKTEQRF-TEMNLETIGDVKRLDVFTLNKEFGRKSGTYIYNAVRGIDDELVKEREPSIQ 252
Query: 182 HG 183
HG
Sbjct: 253 HG 254
>gi|119899076|ref|YP_934289.1| DNA polymerase IV [Azoarcus sp. BH72]
gi|119671489|emb|CAL95402.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
Length = 357
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D+ L+ E+R ++ E T SAGIA NK LAK+AS NKP Q V
Sbjct: 108 DVSGVDRCKGSATLMAQEIRARIRAEVGITASAGIAPNKFLAKVASDWNKPDGQFVVRPD 167
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V + +LP+KK+ + GK+ + N LGV T GDL ++ L +G + G L +
Sbjct: 168 EVAAFVAALPVKKIFGV-GKVTAARLNRLGVHTCGDLRPWTLAALTREFG-SFGASLHRL 225
Query: 165 ARGISGEEVQARLLPKS 181
RGI EV+ + KS
Sbjct: 226 CRGIDEREVKPDRVRKS 242
>gi|93117307|gb|ABE99571.1| DinB [Neisseria meningitidis]
Length = 329
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 117 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 176
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 177 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 231
>gi|326389369|ref|ZP_08210937.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392939169|ref|ZP_10304813.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
gi|325994732|gb|EGD53156.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392290919|gb|EIV99362.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
Length = 389
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
+I E++ +V + T T SAG+++NK LAKLAS NKP + + +L LP+ K
Sbjct: 118 IIALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIPDILKPLPVSK 177
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G K L+ +G+ T+ DLLK S++ L E +G G ++N RGI V+
Sbjct: 178 VYGIGEKSEQKLK-AMGINTIDDLLKLSQESLIEIFG-KLGLEIYNRIRGIDERPVETMR 235
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G K+ + K + H++ + +SE L + + A T+T+
Sbjct: 236 EIKSIGKEKTL--EKDTKDKKLLLHYVKLFSDIISEELV----RERLYARTVTV 283
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +L +G G L+N ARGI V++ +
Sbjct: 184 PGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRI 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 237
KS G+ ++F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 242 RKSVGTERTFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|301757741|ref|XP_002914721.1| PREDICTED: DNA polymerase iota-like [Ailuropoda melanoleuca]
Length = 770
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + + + L+ S
Sbjct: 228 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVLIQS 287
Query: 113 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L +++M +G K L+ LG+++V DL FS L++ G + + ++ G
Sbjct: 288 LSHVREMPGIGYKTAKRLE-ALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 346
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 347 PVTPSGPPQSFSEEDSF---KKCSSEVEAKNKVEELLASLLNRVC----QDGRKPHTIRL 399
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
+ S + SR+ S+ CP+
Sbjct: 400 VIRRYSSENHCSRE---SRQCPI 419
>gi|93117315|gb|ABE99575.1| DinB [Neisseria meningitidis]
gi|93117317|gb|ABE99576.1| DinB [Neisseria meningitidis]
Length = 336
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|93117305|gb|ABE99570.1| DinB [Neisseria meningitidis H44/76]
Length = 335
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|373856739|ref|ZP_09599483.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
gi|372453718|gb|EHP27185.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
Length = 433
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 67 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 126
+LKE + CS GIA NK LAK+AS M KP T + + +L + +M +G K
Sbjct: 138 LLKELDIPCSIGIAPNKFLAKMASDMKKPLGITILRKRDISSVLWPMEAGEMHGVGKKTA 197
Query: 127 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 186
L LG+ T+GDL K ++ +L+ G N G L + A G+ V P+S K
Sbjct: 198 EKLA-PLGILTIGDLAKANDIQLKALLGIN-GLRLKDRANGVDKRTVN----PESVYDFK 251
Query: 187 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
S L S QH L Q+ E L E++ L++ K +A T+++
Sbjct: 252 SIGNSTTLAKDVSNQHLLFQVIEGLVEKVTQRLKRKKVLAQTISV 296
>gi|116628345|ref|YP_820964.1| DNA polymerase IV [Streptococcus thermophilus LMD-9]
gi|122267060|sp|Q03J54.1|DPO4_STRTD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116101622|gb|ABJ66768.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus thermophilus LMD-9]
Length = 367
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 189 LPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VKPNRVRKSIGSERTY 262
>gi|320040029|gb|EFW21963.1| DNA polymerase 4 [Coccidioides posadasii str. Silveira]
Length = 1128
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR V ++T S GI N + AKLA KPA Q + +V + L ++++
Sbjct: 485 IAQTLRDSVKQKTGCDVSVGIGGNILQAKLALREAKPAGQFQLKPEAVLEFIGELTVQQL 544
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGV V D+ + S ++L S G TG LW+ ARGI +V +
Sbjct: 545 PGVACSLGAKLE-ELGVKFVKDIRELSRERLTSSLGPKTGAKLWDYARGIDNADV-GDVA 602
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 233
P+ S + G R + T A V+ ++ LC+EL RL + + K++ + A
Sbjct: 603 PRKSVSAEINWGIRFV-TQAQVEEFVQSLCDELHRRLMENGVKGKQLTMRIMRRA 656
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + LI E+R ++ ET T SAG++ NK LAK+AS +NKP +
Sbjct: 106 LDVTENKKNMTSATLIAQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPNGIKVITP 165
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
L+ L ++K +G + N +G+ T GDL + SE L +G G + +
Sbjct: 166 EEAIAFLEQLAVEKFHGVGKVTARKMHN-MGIYTGGDLKQRSEADLVRFFG-KAGRYYYR 223
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
I R EV + KS G+ ++F + V+ + N+L +L+E + +++ +
Sbjct: 224 IVRAEDNREVNPHRIRKSIGAERTFN-----EDVSDPEIMKNKLT-DLAEGVHRYMDKTQ 277
Query: 224 RIAHTLTL 231
T+TL
Sbjct: 278 NFGRTVTL 285
>gi|406659771|ref|ZP_11067909.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
gi|405577880|gb|EKB52028.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
Length = 364
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I ++ + +E TCSAG+++NK LAKLAS KP T V + L +LPI+K
Sbjct: 135 IAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYEKPHGLTLVLPEDAQNFLAALPIEKF 194
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K +L N +GV DLL+ SE +L + +G G L+ ARGIS V+ +
Sbjct: 195 HGVGKKSVETL-NAMGVYKGADLLELSEMQLIDQFG-RFGYDLYRKARGISLSPVKPDRI 252
Query: 179 PKSHGSGKSF 188
KS GS +++
Sbjct: 253 RKSIGSERTY 262
>gi|419839102|ref|ZP_14362520.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
gi|386909813|gb|EIJ74477.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
Length = 355
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 4/171 (2%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H K I E+R + E T SAG+A K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V + +L + K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVSEFIKTLSLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
+ GI EVQA KS G ++ + T+ LN L +EL RL
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--VENIHTIEQASALLNNLYDELIRRL 277
>gi|313889773|ref|ZP_07823415.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|416852396|ref|ZP_11909541.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
gi|313121818|gb|EFR44915.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|356739885|gb|EHI65117.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
Length = 364
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L V I ++ + KE TCSAG+++NK LAKLAS KP T + + L+
Sbjct: 129 LTSAVKIAKLIQYDIWKELHLTCSAGVSYNKFLAKLASDFEKPHGLTLILPDQAQPFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +E+G+ DLL SE L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGIKSVEKL-HEMGIYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISSSP 246
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V+ + KS GS +++ + L T A V+ + + ++R+ S L+++ + + L
Sbjct: 247 VKPDRIRKSIGSERTY--SKLLYTEADVKAEIAK----HAQRVVSTLDKSHKRGKIVIL 299
>gi|397166941|ref|ZP_10490384.1| DNA polymerase IV [Enterobacter radicincitans DSM 16656]
gi|396091087|gb|EJI88654.1| DNA polymerase IV [Enterobacter radicincitans DSM 16656]
Length = 351
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E+R + ET+ T SAG+A K LAK+AS +NKP Q + + V L +LP+ K
Sbjct: 121 LMAQEIRQTIFNETQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPQFLRTLPLSK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + LG+ T D+ + L + +G G LW ++GI E+ +
Sbjct: 181 IPGV-GKVSAAKLETLGLRTCEDVQRSDLAMLLKRFG-KFGRILWERSQGIDEREISSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW + CE + E L +LE+
Sbjct: 239 LRKSVGVERTLAD--------DIHHW--EECEAIIEHLYPELERR 273
>gi|419706767|ref|ZP_14234277.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
gi|383283489|gb|EIC81443.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
Length = 368
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VRPNRIRKSIGSERTY 262
>gi|344269856|ref|XP_003406763.1| PREDICTED: DNA polymerase iota [Loxodonta africana]
Length = 713
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 178 LLVGSQIAAEIREAIYNKLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDLIHS 237
Query: 113 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
L IK++ +G K L+ LG+++V DL FS L++ G + + ++ G
Sbjct: 238 LNHIKEIPGIGYKTSKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDTS 296
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
V P+S SF + + + + +L + L R+C Q+ R HT+ L
Sbjct: 297 PVTPSGPPQSFSEEDSF---KKCSSEDEAKQKIAELLDSLFNRVC----QDGRKPHTVRL 349
Query: 232 HASAFKSSDSDSRKKFPSKSCPL 254
+ S SR+ S+ CP+
Sbjct: 350 IIRRYSSEKHYSRE---SRQCPV 369
>gi|168056469|ref|XP_001780242.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668296|gb|EDQ54906.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1843
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 23/260 (8%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I + +R Q+ + T T SAG++ NK+LA+LA+ KP + S V+G +D L ++ +
Sbjct: 668 IASVIRSQIFEATRCTASAGVSKNKLLARLATRKAKPNGLYYIAPSEVEGFMDELAVEDL 727
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFS--------------EDKLQESYGFNTGTWLWNI 164
+G L L++ + DLL+ S +D LQ +G TG LW+
Sbjct: 728 PGVGWTLKEKLKSH-NLHKCSDLLRVSKHYNVAEIKFVSLRQDFLQREFGVKTGDMLWSY 786
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
ARGI EVQ + KS G+ ++ G R L +L L E++ RL + + +
Sbjct: 787 ARGIDTREVQQAQIRKSIGAEVNW-GVRFL-VPEDAHRFLVTLSTEVATRLQTAAVKGR- 843
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGV 282
T+TL K + K C R T D+ + ++ SF
Sbjct: 844 ---TITLKVKRRKEGSGEPSKFMGCGVCDNFSRSETVGYATDSQEILLRVAKQLFNSFAF 900
Query: 283 KTQGSHYSGWRITALSVSAS 302
+ G ++T L S
Sbjct: 901 DVRDVRGVGLQVTRLEAVGS 920
>gi|424877038|ref|ZP_18300697.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164641|gb|EJC64694.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 364
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ T T SAGI++NK LAK+AS NKP Q + + ++ LP+KK
Sbjct: 130 IAAEIRARIKSTTGLTASAGISYNKFLAKMASDQNKPNGQFVITPKNGPAFVERLPVKKF 189
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + + LG+ T DL + + D L E +G +G + + IARGI V+ +
Sbjct: 190 HGVGPATAEKM-HRLGIDTGADLKEKTLDFLVEHFG-KSGPYFYGIARGIDNRLVKPDRV 247
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 248 RKSVGAEDTF 257
>gi|443686513|gb|ELT89764.1| hypothetical protein CAPTEDRAFT_151315 [Capitella teleta]
Length = 674
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIK 116
+V E+R ++ +T+ T SAGIA N MLAK+ S NKP Q +PF+ +V + LP++
Sbjct: 257 VVQEIRFRIEVKTQLTASAGIAPNMMLAKVCSDFNKPNGQYLIPFNRQAVMDFVKDLPVR 316
Query: 117 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 176
K+ + G++ S+ +GV T DL + L + Y + + ++ G+ VQ
Sbjct: 317 KVCGI-GRVSCSMLGAMGVVTCSDLFR-KRGLLLKLYSAISFNYFLRVSAGVGSTSVQRG 374
Query: 177 LLPKSHGSGKSFPGPRALKTVASVQH--WLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 234
KS + ++F A + L C EL E L DL++ T+TL
Sbjct: 375 DDRKSMSTERTF---------AEINRPAELFAKCYELCEALVEDLKKENLKGKTITLKIK 425
Query: 235 AFK 237
K
Sbjct: 426 TIK 428
>gi|225869213|ref|YP_002745161.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
gi|225702489|emb|CAX00406.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
Length = 367
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 72 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 131
+ TCSAG+++NK LAKLAS KP T V L+ LPI+K +G + L +
Sbjct: 148 QLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPIEKFHGVGKRTVERL-H 206
Query: 132 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 191
E+GV T DLL+ E L + +G G L+ ARGIS V+ + KS S +++
Sbjct: 207 EMGVYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKPNRMRKSISSERTY--A 263
Query: 192 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP--S 249
+ L A ++ L++ + R+ LE NK++ + L + R P +
Sbjct: 264 KLLYQEADIKVELSK----NARRVADLLEANKKLGRIIVLKVRYADFTTLTKRVSLPELT 319
Query: 250 KSCPLRYGTAKIQEDTFNLFQAGLR 274
+ L A+ D+ QAG+R
Sbjct: 320 RDARLIDQVARELFDSLEEHQAGIR 344
>gi|145502699|ref|XP_001437327.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404477|emb|CAK69930.1| unnamed protein product [Paramecium tetraurelia]
Length = 509
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 7/196 (3%)
Query: 41 LCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 96
+C +D++ D + ++ ++R V KET++ CSAGI+ NKML+KLAS NKP
Sbjct: 156 MCAIPSDYQLTEQDIQIMKASILCQQIRDAVYKETQYKCSAGISFNKMLSKLASSTNKPN 215
Query: 97 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 156
+QT + + + IKK++ GGK+ S + T+G + S +L+ + +
Sbjct: 216 KQTIILECMLPECIAQFNIKKIRGFGGKIKHSFVKS-EIQTIGQAQQLSLSQLEMLFA-D 273
Query: 157 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
++++ RG EEV+ + + H S S + + ++ L + +L+ R+
Sbjct: 274 KAQYVYDKLRGYDNEEVK-KDSERKHKSILSLKNIKKTFSRDTINQSLELIIHDLTMRVT 332
Query: 217 SDLEQNKRIAHTLTLH 232
E + + + LH
Sbjct: 333 DYYEDSNLVPSVVVLH 348
>gi|333977691|ref|YP_004515636.1| DNA polymerase IV [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821172|gb|AEG13835.1| DNA polymerase IV [Desulfotomaculum kuznetsovii DSM 6115]
Length = 421
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Query: 51 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 110
KLL V I L+ ++ +E TCS GI NK+LAK+A+ + KP T + F V L
Sbjct: 116 KLLGSPVEIAHRLKARIRQEVGITCSVGIGPNKLLAKMAAELQKPDGLTQLTFEDVPRRL 175
Query: 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
LP++++ +G + L+ +L + T+GDL F D L+ +G G LW ARGI
Sbjct: 176 WPLPVRELFGVGPRYEEHLR-KLNIHTIGDLANFPVDVLKRRFG-AYGEALWFCARGIDH 233
Query: 171 EEVQARLLPKSHGSGKSFPGPR 192
V L + G+ PR
Sbjct: 234 SPVDPGSLKQVKSIGQQITLPR 255
>gi|121635137|ref|YP_975382.1| DNA polymerase IV [Neisseria meningitidis FAM18]
gi|385340339|ref|YP_005894211.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|416178473|ref|ZP_11610615.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|416192460|ref|ZP_11616642.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|416203316|ref|ZP_11620044.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|421542743|ref|ZP_15988849.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|433467593|ref|ZP_20425047.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|433492845|ref|ZP_20449935.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|433494972|ref|ZP_20452039.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|433497141|ref|ZP_20454176.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|433499204|ref|ZP_20456211.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|433501175|ref|ZP_20458160.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|433503328|ref|ZP_20460288.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
gi|189027672|sp|A1KUQ3.1|DPO4_NEIMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120866843|emb|CAM10601.1| impB/mucB/samB family protein [Neisseria meningitidis FAM18]
gi|325132193|gb|EGC54889.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|325138126|gb|EGC60699.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|325142626|gb|EGC65017.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|325198583|gb|ADY94039.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|402316662|gb|EJU52204.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|432202427|gb|ELK58491.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|432227708|gb|ELK83416.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|432229620|gb|ELK85305.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|432233226|gb|ELK88858.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|432233631|gb|ELK89257.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|432235148|gb|ELK90765.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|432239638|gb|ELK95186.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
Length = 352
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|407462177|ref|YP_006773494.1| DNA-directed DNA polymerase [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045799|gb|AFS80552.1| DNA-directed DNA polymerase [Candidatus Nitrosopumilus koreensis
AR1]
Length = 364
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 62 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 121
+++ + ++T+ +CS GI+ NK+++K+AS KP T V ++ L+SL I+ + +
Sbjct: 134 QIKNSIREKTKLSCSIGISPNKLISKIASDFQKPDGLTVVSSEKIEQFLESLKIRDIPGI 193
Query: 122 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 181
G K E+ T+GDL K L + +G +GT+++N RGI E V+ R
Sbjct: 194 GKKTEQRFA-EMNFETIGDLKKLDVFTLNKEFGRKSGTFIYNAVRGIDNEPVKKREPSIQ 252
Query: 182 HGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
H GK + K + L +LC+E+ E
Sbjct: 253 H--GKIVTLKKDSKDYTFLLENLLELCKEVHE 282
>gi|161870317|ref|YP_001599487.1| DNA polymerase IV [Neisseria meningitidis 053442]
gi|161595870|gb|ABX73530.1| putative DNA-damage inducible protein P [Neisseria meningitidis
053442]
Length = 342
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 113 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 172
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 173 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 227
>gi|294669256|ref|ZP_06734336.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308888|gb|EFE50131.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 354
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L ET T SAG+A NK LAK+AS NKP Q +P V+ L LP+ K+
Sbjct: 123 IARSIRADILAETGLTASAGVAPNKFLAKIASDWNKPNGQFVLPPQKVEAFLTGLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ TVGDL + S +L +G G L ++A GI V+A
Sbjct: 183 PGV-GKVTRQKMQRLGMNTVGDLRRHSPGELANLFG-KWGYRLHDLAYGIDNRPVKA 237
>gi|254670271|emb|CBA05549.1| DNA polymerase IV [Neisseria meningitidis alpha153]
Length = 400
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 171 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 230
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 231 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 285
>gi|304387164|ref|ZP_07369408.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
gi|304338768|gb|EFM04878.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
Length = 342
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 113 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 172
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 173 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 227
>gi|227499298|ref|ZP_03929410.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
gi|227218649|gb|EEI83883.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
Length = 344
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
L+ +V K+T + S GI++NK LAKLAS KP T + + L + I K+ +G
Sbjct: 120 LQNKVFKDTGISISVGISYNKFLAKLASDWKKPHGITMIGEDDLDKFLPEISINKVHGIG 179
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
K L N++G+ V DLLK + L +++G G +++ + RG+ V L KS
Sbjct: 180 KKTSERL-NKIGIYKVKDLLKLDREYLLDNFG-KQGAYIYQVIRGVDKRAVNPNRLRKSI 237
Query: 183 GSGKSFP-GPRALKTVASVQHWLNQLCEE 210
G ++F + LK + S L++L E+
Sbjct: 238 GKERTFTQNTKELKILDSYLRNLSELIED 266
>gi|126178330|ref|YP_001046295.1| DNA-directed DNA polymerase [Methanoculleus marisnigri JR1]
gi|226738237|sp|A3CSG3.1|DPO4_METMJ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|125861124|gb|ABN56313.1| DNA-directed DNA polymerase [Methanoculleus marisnigri JR1]
Length = 360
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ +V +ET TCS G+A K +AK+AS KP T V V G L SLP+ ++ +G
Sbjct: 132 IKREVREETGLTCSVGVAPGKAVAKIASDFQKPDGLTIVRPDEVAGFLASLPVGRIPGIG 191
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
K G L+ + G+ TVGDL + ++ G +G + ++ARGI EVQ R KS
Sbjct: 192 KKTGEDLR-QAGILTVGDLARRDVQEVIARLG-RSGVRVHHLARGIDDGEVQGREGCKSI 249
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
+F A V + L +L ++++E L +D
Sbjct: 250 SRETTFEADTADPPV--LAGTLAELADDVAETLRAD 283
>gi|298368851|ref|ZP_06980169.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
gi|298282854|gb|EFI24341.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
Length = 352
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ ++R ++L ET T SAGIA NK LAK+AS KP Q +P L++LP+ K+
Sbjct: 123 VAEKIRAEILAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKAAAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
+ GK+ LG+ T GDL +F +L +G G L+++ARG+ V+
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNLFG-RYGYRLYDLARGVDERPVK 236
>gi|194904125|ref|XP_001981005.1| GG23702 [Drosophila erecta]
gi|190652708|gb|EDV49963.1| GG23702 [Drosophila erecta]
Length = 737
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R LA G + E+R ++ TC AGIA+NK+LAKL +KP QQT +
Sbjct: 153 CDCGCAQR---LAIGTRVAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVL 209
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ + + L +K++ +G K L E G+++V L + D +++ +GF T T
Sbjct: 210 VSTYAEQFMRELGDLKRITGIGQK-TQCLLLEAGMSSVEQLQQCDMDIMRKKFGFETATR 268
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L ++A G V+ PK+ G + P +++T V+ L + L E++ D
Sbjct: 269 LRDLAFGRDTSSVRPTGKPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGR 325
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 262
I L S KSS ++++ F + CP G +K+Q
Sbjct: 326 VPIAIKVVLRKFDSQKKSSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|421565721|ref|ZP_16011491.1| DNA polymerase IV [Neisseria meningitidis NM3081]
gi|402343298|gb|EJU78447.1| DNA polymerase IV [Neisseria meningitidis NM3081]
Length = 352
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|427827542|ref|ZP_18994574.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
gi|316984579|gb|EFV63544.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
Length = 342
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 113 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 172
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 173 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 227
>gi|421894550|ref|ZP_16325038.1| ImpB/MucB/SamB family protein [Pediococcus pentosaceus IE-3]
gi|385272640|emb|CCG90410.1| ImpB/MucB/SamB family protein [Pediococcus pentosaceus IE-3]
Length = 374
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K L VLI E++ + ET+ TCS GI++NK LAK+AS +KP +
Sbjct: 123 LDVSEDKKGLGDAVLIAHEIQKVIFNETQLTCSTGISYNKFLAKMASEYSKPVGVAIIEK 182
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V L ++PI++ + +G K + +ELGV DL+K SE+ L +G G L+
Sbjct: 183 DDVAEFLKNIPIERFRGVGKKTVPKM-HELGVFQGADLIKMSENDLIHYFG-KFGYTLFR 240
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
RG V+ KS G +++ + L T V+ L + + L + + K
Sbjct: 241 WVRGQDDRPVEYLRERKSIGKEETY--GKLLTTEMEVEERLRVIAKNLLRAVLKRQKHGK 298
Query: 224 RIAHTL 229
I L
Sbjct: 299 TIVLKL 304
>gi|352516889|ref|YP_004886206.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
gi|348600996|dbj|BAK94042.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
Length = 378
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
+ I ++ + +E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 137 AIKIAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYQKPRGLTVVTPDEAVEFLRDLPI 196
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K +G K + +ELG+ T DL + SE +L + +G G L+ RGI VQ
Sbjct: 197 EKFHGVGKKTVPKM-HELGIYTGNDLYQKSEMELIQIFG-KMGYSLYRKVRGIHNSPVQV 254
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQL---CEELSERLCSDLEQNKRIAHTLTLH 232
KS G +++ K + S Q L+QL E+++E L + + K + L L
Sbjct: 255 TRERKSVGRERTYG-----KALTSEQECLSQLRIMAEQVTESLKKEQKHGKTVV--LKLR 307
Query: 233 ASAFKS 238
S F++
Sbjct: 308 YSDFET 313
>gi|385852932|ref|YP_005899446.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|416196178|ref|ZP_11618024.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|433465393|ref|ZP_20422874.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|433490777|ref|ZP_20447897.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|433505380|ref|ZP_20462318.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|433507449|ref|ZP_20464355.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
gi|325140607|gb|EGC63127.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|325199936|gb|ADY95391.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|432202592|gb|ELK58651.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|432226697|gb|ELK82421.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|432240672|gb|ELK96206.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|432240723|gb|ELK96256.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
Length = 352
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|418622447|ref|ZP_13185198.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU123]
gi|374826837|gb|EHR90717.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU123]
Length = 309
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + + T T SAG+++NK LAKLASGMNKP T + +++V +L L I
Sbjct: 124 IANYIRRDIYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + ++ + T DL E +L +G G L+N ARGI EV+A +
Sbjct: 184 PGVGK--ASKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRV 240
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G+ ++F T + + + ELS + L + ++ T+T+ ++
Sbjct: 241 RKSVGTERTFS------TDVNDDDVILRKIRELSGKTAERLNKIQKSGKTVTVKIKTYQY 294
Query: 239 SDSDSRKKF 247
+KKF
Sbjct: 295 ETISKQKKF 303
>gi|254805229|ref|YP_003083450.1| DNA polymerase IV [Neisseria meningitidis alpha14]
gi|421568021|ref|ZP_16013752.1| DNA polymerase IV [Neisseria meningitidis NM3001]
gi|254668771|emb|CBA06675.1| DNA-damage-inducible protein p [Neisseria meningitidis alpha14]
gi|254672331|emb|CBA05492.1| DNA polymerase IV [Neisseria meningitidis alpha275]
gi|402342966|gb|EJU78122.1| DNA polymerase IV [Neisseria meningitidis NM3001]
Length = 352
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|409201309|ref|ZP_11229512.1| DNA polymerase IV [Pseudoalteromonas flavipulchra JG1]
Length = 374
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI ++R + ET T SAGIA K LAK+AS NKP Q +P V +D+LP+KK
Sbjct: 143 LIAEQIRADIFAETGLTASAGIAPIKFLAKIASDENKPNGQCVIPPHQVSAFIDALPLKK 202
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ +G+ D+ SE +L++S+G G LW +GI V+
Sbjct: 203 IPGV-GKVTQQRLLAMGLEYGRDIKALSETQLRQSFG-KFGAVLWRRCQGIDERRVETDR 260
Query: 178 LPKSHGSGKSF 188
+ KS G +F
Sbjct: 261 VRKSIGVETTF 271
>gi|121998646|ref|YP_001003433.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
gi|254781922|sp|A1WY69.1|DPO4_HALHL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|121590051|gb|ABM62631.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
Length = 356
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R ++ +ET T SAG+++NK+LAKLAS KP VP + + PI+++ +G
Sbjct: 128 IRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGPAYVAAQPIRRLHGVG 187
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
L+ LG+ VGDLL + L G GT L + ARGI V+ R KS
Sbjct: 188 PATAARLER-LGIRQVGDLLDWELADLHVFLGNRAGT-LHDAARGIDHRPVRPRRSRKSI 245
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
G+ ++F + + + L L +++ R LE ++ +A T+TL
Sbjct: 246 GAERTFGD--DTRDLGEIHQRLAPLITKVATR----LEHHELVARTVTL 288
>gi|238784453|ref|ZP_04628462.1| DNA polymerase IV [Yersinia bercovieri ATCC 43970]
gi|238714622|gb|EEQ06625.1| DNA polymerase IV [Yersinia bercovieri ATCC 43970]
Length = 352
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 53 LAC---GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LAC LI E+R + E T SAGIA K LAK+AS +NKP Q + +
Sbjct: 113 LACSGSATLIAQEIRQSIADELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQILPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ E+G+ T D+ + + +L + +G G LW + GI
Sbjct: 173 LHDLPLSKIPGVGKVTAKRLQ-EVGLVTCSDVQNYPQAELLKRFG-KFGHVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+V L KS G ++ + W + CE L E+L +LE R
Sbjct: 231 ERDVSPDRLRKSVGVERTL--------AEDIHDW--ESCESLIEQLYIELETRLR 275
>gi|322373597|ref|ZP_08048133.1| DNA polymerase IV [Streptococcus sp. C150]
gi|321278639|gb|EFX55708.1| DNA polymerase IV [Streptococcus sp. C150]
Length = 365
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VRPNRVRKSIGSERTY 262
>gi|417842649|ref|ZP_12488730.1| DNA polymerase IV [Haemophilus haemolyticus M21127]
gi|341951208|gb|EGT77785.1| DNA polymerase IV [Haemophilus haemolyticus M21127]
Length = 355
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 13/193 (6%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H K I E+R + E T SAG+A K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V + +L + K+ + GK+ + ++G+ T ++ F + L +G G +W+
Sbjct: 171 EVSEFIKTLSLNKIPGV-GKVTSQRLLDMGLETCANIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
+ GI EVQA KS G ++ + T+ LN L +EL RL KR
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--LENIHTIEQASELLNNLYQELIRRL-------KR 279
Query: 225 IAHTLTLHASAFK 237
+A + L S+F+
Sbjct: 280 VAPNIPL--SSFR 290
>gi|337280537|ref|YP_004620009.1| DNA polymerase IV [Ramlibacter tataouinensis TTB310]
gi|334731614|gb|AEG93990.1| Candidate DNA polymerase IV [Ramlibacter tataouinensis TTB310]
Length = 409
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
G ++ ++ + + T TCS G+A NK++AK+AS NKP + V V+ L+ LP+
Sbjct: 153 GRVLARLIQKAIFERTALTCSIGVAPNKLIAKMASEFNKPNGISVVHGEDVQRLIWPLPV 212
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K+ +G K L + LG+T +GD+ + L +G + G WL + A G V
Sbjct: 213 RKINGIGPKAEAKL-HRLGLTAIGDIAAREREWLVGHFGKSNGAWLHDAAWGRDDRPVVT 271
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
P S +F R L V + L + +L ER+ DL++ + T+ +
Sbjct: 272 ESEPVSMSRETTF--ERDLHAVRD-RAELGAIFTDLCERVAGDLQRKGYVGRTIGI 324
>gi|227503298|ref|ZP_03933347.1| DNA polymerase IV [Corynebacterium accolens ATCC 49725]
gi|227075801|gb|EEI13764.1| DNA polymerase IV [Corynebacterium accolens ATCC 49725]
Length = 493
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 17/230 (7%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
LR + +ET CS G K AK+ SG KP +P +L LP+ K+ +G
Sbjct: 160 LRALIREETGLPCSIGAGSGKQFAKIGSGEAKPDGTYVIPADKQLEMLHPLPVGKLWGVG 219
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
L+ +GV T+G L ++ +++ S G G LW +A+GI EV R + K
Sbjct: 220 PVTEAKLKG-IGVETIGALAAMTQKEVEISIGSVVGLQLWQLAQGIDDREVAPRAISKQI 278
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 242
+ ++ P+ L TV V + + E RL D R A T+T+ + +D
Sbjct: 279 STEHTY--PKDLLTVPDVDAAITRAAEGAHRRLLKD----GRGARTVTVK---LRMADF- 328
Query: 243 SRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG-VKTQGSHYSG 291
S+S L Y T ++ T F+ L + G ++ G YSG
Sbjct: 329 ---HIESRSTTLAYATDDLEVLTAAAFK--LARYPDELGPIRLVGVSYSG 373
>gi|327404453|ref|YP_004345291.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
gi|327319961|gb|AEA44453.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
Length = 370
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + L+ E+R ++ +E SAGI+ NK AK+AS +NKP Q TV
Sbjct: 121 LDVTTNKKGIQSATLLAKEIRERIYQEVGLRASAGISINKFTAKVASDVNKPNGQLTVIP 180
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
V+ L+ LPI + +G T ++ ELGV T DL + S D L + +G G +N
Sbjct: 181 EEVETFLEKLPIDRFFGIGKVTATKMK-ELGVRTGKDLKQKSIDFLNQHFG-KQGLHFYN 238
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
I RGI +V+ + KS ++
Sbjct: 239 IVRGIQYSKVKPNRIRKSFAVEHTY 263
>gi|410658983|ref|YP_006911354.1| DNA polymerase IV [Dehalobacter sp. DCA]
gi|410661970|ref|YP_006914341.1| DNA polymerase IV [Dehalobacter sp. CF]
gi|409021338|gb|AFV03369.1| DNA polymerase IV [Dehalobacter sp. DCA]
gi|409024326|gb|AFV06356.1| DNA polymerase IV [Dehalobacter sp. CF]
Length = 387
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I ++ ++ +E T S G+A NK LAK+AS + KP VP V+ LD L ++++
Sbjct: 128 IAVLIKQRIRQELGLTASVGLAPNKFLAKIASDLQKPNGFVVVPPDKVQEFLDPLEVERV 187
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L +EL V TV DL E L + +G G L+ +ARGI V+ +
Sbjct: 188 WGVGIKTAEQL-HELRVRTVKDLRSLDESALSKRFGV-MGKRLYELARGIDNRSVETERM 245
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G +F L +A V +L E L D+ + R H+L K+
Sbjct: 246 TKSVGRETTF-----LSDIADVDVLEKELLE-----LAVDVGRRMR-KHSLKAKTITLKA 294
Query: 239 SDSDSRKKFPSKSCP 253
D R S + P
Sbjct: 295 RYPDFRTLSRSSTLP 309
>gi|189424136|ref|YP_001951313.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
gi|189420395|gb|ACD94793.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
Length = 409
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D H L I +L+ ++ +E TCS GIA NK+LAKLAS M KP T +
Sbjct: 108 DVTHSRALFGSAETIAHQLKARIRQELGLTCSVGIAPNKLLAKLASDMQKPDGLTVIAPD 167
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
+K +L+S+ I + +G KL L N LG+ + G L +F E+ L +G G L +
Sbjct: 168 QIKAVLESVTIGDLCGIGKKLERRL-NLLGIKSCGQLGRFPEELLSRKFGI-IGPRLREM 225
Query: 165 ARGISGEEVQARLLPKSHGS-GKSFPGPRALKTVASVQHWLNQLCEELSER 214
+GI V A + S G S + + T + +L QL E + R
Sbjct: 226 GQGIDDSPVLATEGDEQVKSVGHSMTLHKDIDTRQDILRYLLQLAEMVGRR 276
>gi|302765499|ref|XP_002966170.1| hypothetical protein SELMODRAFT_407478 [Selaginella moellendorffii]
gi|300165590|gb|EFJ32197.1| hypothetical protein SELMODRAFT_407478 [Selaginella moellendorffii]
Length = 629
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I + +R ++ + T T SAGI+ N +LA+LA+ KP Q + + + +LP++++
Sbjct: 374 IASAIRREIFEATRCTASAGISANILLARLATKKAKPNGQFQIHLQEAEEFMMNLPVEEL 433
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G L L + L + T DL + + L++ +G TG L+N ARGI +VQA
Sbjct: 434 PGVGWVLREKL-HALKLFTCSDLRLLTSETLRKHFGAKTGETLYNHARGIDHRKVQAPQE 492
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G+ ++ G R T A Q++L L EE++ RL
Sbjct: 493 KKSIGAEVNW-GVR-FSTPADAQNFLVTLSEEVASRL 527
>gi|228477003|ref|ZP_04061641.1| DNA polymerase IV [Streptococcus salivarius SK126]
gi|228251022|gb|EEK10193.1| DNA polymerase IV [Streptococcus salivarius SK126]
Length = 368
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+
Sbjct: 129 IKSAVKVAKLIQYNIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VRPNRVRKSIGSERTY 262
>gi|190894484|ref|YP_001984777.1| DNA polymerase IV [Rhizobium etli CIAT 652]
gi|190700145|gb|ACE94227.1| DNA-directed DNA polymerase protein [Rhizobium etli CIAT 652]
Length = 362
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D H K + I E+R ++ + T SAGI++NK LAK+AS +NKP Q +
Sbjct: 114 LDVTHNLKGMEIATEIALEIRAKIKQATGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ +++LP+KK +G + + LG+ T DL + + L E +G +G +
Sbjct: 174 KNGPAFVEALPVKKFHGVGPATADKM-HRLGIDTGADLKGKTLEFLVEHFG-KSGPYFHG 231
Query: 164 IARGISGEEVQARLLPKSHGSGKSF 188
IARGI +V+ + KS G+ +F
Sbjct: 232 IARGIDERQVKPNRVRKSVGAEDTF 256
>gi|126435694|ref|YP_001071385.1| DNA polymerase IV [Mycobacterium sp. JLS]
gi|126235494|gb|ABN98894.1| DNA-directed DNA polymerase [Mycobacterium sp. JLS]
Length = 452
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
LR +VL+ET S G K +AK+ASG+ KP V + + LLDSL ++K+ +
Sbjct: 127 LRARVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLWGI- 185
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
G + + LG+ T+G L SE ++ + G G L +ARGI V R K
Sbjct: 186 GPVAEDRLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDDRPVAERAEAKQI 245
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+ +FP L T+ V+ + + + RL D R A T+T+
Sbjct: 246 SAESTFPA--DLITLDQVREAIGPIADHAHRRLAKD----GRGARTVTV 288
>gi|225869835|ref|YP_002745782.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
gi|225699239|emb|CAW92538.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
Length = 367
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Query: 72 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 131
+ TCSAG+++NK LAKLAS KP T V L+ LPI+K +G + L +
Sbjct: 148 QLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPIEKFHGVGKRTVERL-H 206
Query: 132 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 191
E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS S +++
Sbjct: 207 EMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKPNRMRKSISSERTY--A 263
Query: 192 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 251
+ L A ++ L++ + R+ LE NK++ + L + R P +
Sbjct: 264 KLLYQEADIKAELSK----HARRVADLLEANKKLGRIIVLKVRYADFTTLTKRVSLPELT 319
Query: 252 CPLRYGTAKIQE--DTFNLFQAGLR 274
R +E D+ QAG+R
Sbjct: 320 RDARIIDQVARELFDSLEEHQAGIR 344
>gi|409044729|gb|EKM54210.1| hypothetical protein PHACADRAFT_145933 [Phanerochaete carnosa
HHB-10118-sp]
Length = 589
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 60 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSVKGLLDSLPIKK 117
V +R V +ET+ T SAGIA NK+LAK+ S NKP Q + F ++VK + L I+K
Sbjct: 220 VRGMRETVFRETKLTVSAGIAPNKVLAKICSDRNKPNGQFALDFTPAAVKAFMHDLSIRK 279
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLL--KFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ + G++ L + +G+ T GD+ + + + + +G + +L GI+ VQ
Sbjct: 280 IPGV-GRVNERLLDSVGIQTCGDIYTHRATLALMDKYFGLH---FLLQTYLGIASNVVQ- 334
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
P KS R T++S + L +L EE++ L DLE+ T+TL
Sbjct: 335 ---PGQREERKSIGAERTFHTISSKEDILRKL-EEVAAELNEDLERTGWTGKTVTL 386
>gi|71653214|ref|XP_815248.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70880290|gb|EAN93397.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 3/172 (1%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
LL +V +LR ++ +E + CSAGIAHNK+LAK S +KP QQT + V +
Sbjct: 200 LLGAASRVVWKLREKIYQELCYDCSAGIAHNKILAKSISSRHKPNQQTLLLPDRVASAVW 259
Query: 112 SLPIKKMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 170
P + + GGK G S+ G D +KLQ G + GT+ + R
Sbjct: 260 DAPYQSIHGFGGKFGESVCRACGNAELFRDAWLVPLEKLQSVLGVDDGTYAFYRLRCHGK 319
Query: 171 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
E++Q + + K+ + KSF P + + ++ W+ L EL R E N
Sbjct: 320 EKIQEQSVTKTLMASKSFSPPTS--SSEGLRKWITVLSSELCARYKEFCETN 369
>gi|350566930|ref|ZP_08935549.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
gi|348660650|gb|EGY77359.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
Length = 349
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 29/249 (11%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +++ +V T T S GI++NK LAKLAS NKP + + V +L L IKK+
Sbjct: 119 VAKQIKNEVKDRTGLTVSCGISYNKFLAKLASDWNKPDGLKVISKNDVPDILLPLDIKKV 178
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
LG K L+N +G+ TV D+ + + L++ +G G ++ RGI V ++
Sbjct: 179 HGLGRKSQEKLRN-IGINTVEDMFQLDLEFLEKIFG-KMGYEIYQRIRGIDNRAVNSQRS 236
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G ++FP R + LN+L + S L DL TLTL F
Sbjct: 237 RKSLGVERTFPDTRDKYIL------LNRLI-QYSVELSKDLSSKNLGFKTLTLKLKTFDF 289
Query: 239 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 298
+ K + + + D + L F +HY G ++ +
Sbjct: 290 KINTHSKTY-----------SHVINDKQEIENLALELF---------NTHYKGEKLRLMG 329
Query: 299 VSASKIVPV 307
+SAS + P+
Sbjct: 330 ISASNLQPL 338
>gi|37525206|ref|NP_928550.1| DNA polymerase IV [Photorhabdus luminescens subsp. laumondii TTO1]
gi|81572650|sp|Q7N7B6.1|DPO4_PHOLL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|36784633|emb|CAE13533.1| DNA polymerase IV (DNA-damage-inducible protein P) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 351
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAGIA K LAK+AS +NKP Q +P V + LP++K
Sbjct: 121 LIAQEIRQSIFDELQLTASAGIAPVKFLAKIASDINKPNGQYVIPPDRVADFIKVLPLRK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G + L N +G+ T D+ K+ L + G G LW+ GI V
Sbjct: 181 IPGVGKVMVQRLAN-MGLETCSDVQKYDVIVLVKQLG-KFGQVLWDRCHGIDERLVNPDR 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + W + C EL E L +LE+
Sbjct: 239 LRKSIGVERTL--------ARDIHQW--EQCTELIESLYLELEKR 273
>gi|300703898|ref|YP_003745500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum CFBP2957]
gi|299071561|emb|CBJ42885.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CFBP2957]
Length = 362
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPQQVDAFVA 179
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ + KS +++ L+T+ + L L ++L+ R+
Sbjct: 238 PVQPSQIRKSVSVEETYAT--DLRTLDDCRRELTVLVDQLAARV 279
>gi|258574661|ref|XP_002541512.1| MUS42 protein [Uncinocarpus reesii 1704]
gi|237901778|gb|EEP76179.1| MUS42 protein [Uncinocarpus reesii 1704]
Length = 1135
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I LR + ++T S GI N + AKLA KPA Q + +V + ++++
Sbjct: 489 IAQGLRDSIKRKTGCDVSVGIGGNILQAKLALRKAKPAGQFQLKPDAVLDFIGEFTVQQL 548
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ LG L+ ELGV V D+ + S+++L +S G TG LW+ ARGI EV +
Sbjct: 549 PGVAYSLGGKLE-ELGVKYVKDIRELSKERLIQSLGPKTGAKLWDYARGIDNAEV-GDVA 606
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 233
P+ S + G R + T A + ++ LC+EL RL + + K++ + A
Sbjct: 607 PRKSVSAEINWGIRFV-TQAQAEEFVQSLCDELHRRLVENGVKGKQLTMRIMRRA 660
>gi|392542511|ref|ZP_10289648.1| DNA polymerase IV [Pseudoalteromonas piscicida JCM 20779]
Length = 374
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI ++R ++ ET T SAGIA K LAK+AS NKP Q +P V +D+LP+KK
Sbjct: 143 LIAEQIRADIVAETGLTASAGIAPIKFLAKIASDENKPNGQCVIPPHQVSAFIDALPLKK 202
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ +G+ D+ SE +L++S+G G LW +GI V+
Sbjct: 203 IPGV-GKVTQQRLLAMGLEYGRDIKALSEIQLRQSFG-KFGAVLWRRCQGIDERRVETDR 260
Query: 178 LPKSHGSGKSF 188
+ KS G +F
Sbjct: 261 VRKSIGVETTF 271
>gi|380025132|ref|XP_003696333.1| PREDICTED: DNA polymerase iota-like [Apis florea]
Length = 566
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 97/214 (45%), Gaps = 13/214 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R L I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QQT +
Sbjct: 157 CPCGCHAR---LIIASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHKPNQQTLI 213
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
S LL ++ I K+ +G K T L + T+ DL K + L+ G +
Sbjct: 214 FPCSAPMLLSNIGSISKIPGVGQK-TTQLLMSNNIKTIDDLRKTPLETLEMKIGIDLARK 272
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L + A GI V+ +S G F +++ VA V+ L L L+E D
Sbjct: 273 LKDNAEGIDETVVKPTGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED-- 327
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 254
+A LT+ F S S R+ ++ C L
Sbjct: 328 GRIPVAMRLTVRKHDFNKSSSGKRE---TRQCAL 358
>gi|207742975|ref|YP_002259367.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum IPO1609]
gi|206594371|emb|CAQ61298.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum IPO1609]
Length = 357
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 115 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 174
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 175 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHR 232
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ + KS +++ L+T+ + L L ++L+ R+
Sbjct: 233 PVQPSQIRKSVSVEETYATD--LRTLDDCRRELTVLVDQLAARV 274
>gi|171057625|ref|YP_001789974.1| DNA-directed DNA polymerase [Leptothrix cholodnii SP-6]
gi|170775070|gb|ACB33209.1| DNA-directed DNA polymerase [Leptothrix cholodnii SP-6]
Length = 436
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ EL+ V + T +CS G+A NK+LAK+ S ++KP T V V + LP++++
Sbjct: 151 LAQELKNNVRRATGLSCSVGLAPNKLLAKICSDLDKPDGLTVVMAEDVASRIWPLPVRRI 210
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L++ LGV T+G+L + S L + +G + G WL A G V
Sbjct: 211 HGVGPKASARLES-LGVHTIGELARQSPAWLSDHFGAHHGEWLLAAAHGQDDRPVVTESE 269
Query: 179 PKSHGSGKSFP---GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHA 233
P S +F PR + + L ++ +L ER+ DL + + T + L
Sbjct: 270 PVSMSRETTFERDLHPRTDRAL------LGRIFTDLCERVGDDLRRKGYVGRTIGIKLRF 323
Query: 234 SAFKSSDSDSRKKFPS 249
F++ D P+
Sbjct: 324 DDFRTVTRDHTVALPT 339
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +R ++L+ET T SAG+A NK LAK+AS +KP + + V L LP++K+
Sbjct: 125 VARSIRSEILQETRLTASAGVAPNKFLAKIASDWDKPDGLFVIKPAQVLAFLQPLPVRKV 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
+G + L+ LGV TVGDL + + +L+ +G G L +++GI EVQ
Sbjct: 185 PGVGKVMQARLE-ALGVHTVGDLARHTAVELEHHFG-RYGIRLHELSQGIDRREVQ 238
>gi|416187210|ref|ZP_11614132.1| DNA polymerase IV, partial [Neisseria meningitidis M0579]
gi|325136557|gb|EGC59160.1| DNA polymerase IV [Neisseria meningitidis M0579]
Length = 264
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 35 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 94
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+ GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 95 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 149
>gi|452751626|ref|ZP_21951371.1| DNA polymerase IV [alpha proteobacterium JLT2015]
gi|451960845|gb|EMD83256.1| DNA polymerase IV [alpha proteobacterium JLT2015]
Length = 362
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++L T T SAG+++NK LAKLAS NKP + + LP+K+
Sbjct: 125 IAREIRAEILSTTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRPHEGAAFVAGLPVKRF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G ++ G+ T DL S + LQ ++G + + + ARGI V+A +
Sbjct: 185 HGVGPVTAAKMER-FGIRTGADLAAKSREWLQGNFG-RSADYYYGAARGIDHRPVRASRV 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
KS G+ ++F +T A + L + E + ER+
Sbjct: 243 RKSIGAERTF--SEDFRTRADLLAALEPVIEAVWERI 277
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 6/184 (3%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ +I + +R ++ ++T SAGI+ NK +AK+AS +NKP Q T+P V L+
Sbjct: 120 MPSATVIASWIRQRIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEE 179
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
L I+K +G K + G+ T D+ S++ L +++G +G + ++I RGI E
Sbjct: 180 LDIRKFYGIGKKTAEKMYLH-GIFTGMDMKMKSKEYLSDNFG-KSGAYYYDIVRGIQYSE 237
Query: 173 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 232
V+ + KS + ++F + + + L+ + EE+ +RL K I TL +
Sbjct: 238 VRPNRIRKSLAAERTF--SENITSEIFMLEKLDIIAEEVEKRLAKSQVAGKTI--TLKIK 293
Query: 233 ASAF 236
S F
Sbjct: 294 YSDF 297
>gi|211065519|ref|NP_001122409.2| polymerase (DNA directed) iota [Nasonia vitripennis]
Length = 635
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 8/178 (4%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R LA I ++R ++L E TCSAGIAHNK+LAKL +NKP QQT V
Sbjct: 182 CPCGCHTR---LAVASSIAMDMRSKILNELGLTCSAGIAHNKLLAKLGGAVNKPNQQTVV 238
Query: 102 -PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
P S+ L + K+ +G + SL + TV D+ K ++LQ G
Sbjct: 239 YPCSAASLLSSLGSVSKIPGVGRRTAESLTAN-NILTVDDVRKTPLERLQVKIGKELARK 297
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 218
+ + A GI V+ P+S G F + + V V+ L+ L L+E D
Sbjct: 298 IKDYAEGIDDTPVKPSGRPQSIGLEDGF---KKVSLVDEVESRLSALLRRLTELAAED 352
>gi|387131110|ref|YP_006294000.1| DNA polymerase IV [Methylophaga sp. JAM7]
gi|386272399|gb|AFJ03313.1| DNA polymerase IV [Methylophaga sp. JAM7]
Length = 362
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI ++ +LKET T SAG+++NK LAK+AS M+KP + + +++LP+ K
Sbjct: 124 LIAKAIKRDILKETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRPERGEKFVETLPVGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G ++ +LG+ T DL + +L E +G G + +NIAR I V++
Sbjct: 184 FHGIGPATEAKMK-QLGIETGLDLRNKTLAQLTERFG-KAGHYYFNIARAIDERPVRSSR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G +F + + SV +L +L+E + L + K A T+T+
Sbjct: 242 TRKSLGKETTFA-----QDITSVTELTTKLL-DLAEIVLESLAKQKLNARTVTV 289
>gi|194746257|ref|XP_001955597.1| GF18848 [Drosophila ananassae]
gi|190628634|gb|EDV44158.1| GF18848 [Drosophila ananassae]
Length = 732
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R LA G I E+R ++ TC AGI++NK+LAKL +KP QQT +
Sbjct: 153 CDCGCAQR---LAIGSRIAQEIREELKLRLGITCCAGISYNKLLAKLVGSSHKPNQQTVL 209
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ + + L +K++ +G K L E G++TV L + D +++ +GF T T
Sbjct: 210 VSTYAEQFMRDLGDLKRITGIGQK-TQCLLLEAGMSTVEQLQQCDMDVMRKKFGFETATR 268
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L ++A G V+ PK+ G S P +++T V+ L + L E++ D
Sbjct: 269 LRDLAFGRDTGLVRPTGKPKTIGMEDSC-KPISVRT--DVEERFRMLLKRLVEQVSEDGR 325
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 262
I L S KSS ++++ F + CP G +K+Q
Sbjct: 326 IPISIKVVLRKFDSQKKSSHRETKQANILPSLFKTSVCPGETGVSKVQ 373
>gi|83745844|ref|ZP_00942901.1| DNA polymerase IV [Ralstonia solanacearum UW551]
gi|83727534|gb|EAP74655.1| DNA polymerase IV [Ralstonia solanacearum UW551]
Length = 362
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 179
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ + KS +++ L+T+ + L L ++L+ R+
Sbjct: 238 PVQPSQIRKSVSVEETYATD--LRTLDDCRRELTVLVDQLAARV 279
>gi|421898125|ref|ZP_16328492.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
gi|206589331|emb|CAQ36293.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
Length = 357
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 115 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 174
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 175 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHR 232
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ + KS +++ L+T+ + L L ++L+ R+
Sbjct: 233 PVQPSQIRKSVSVEETYATD--LRTLDDCRRELTVLVDQLAARV 274
>gi|332286231|ref|YP_004418142.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
gi|330430184|gb|AEC21518.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
Length = 387
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ V + T +CS GI+ NK+L+K+AS ++KP T + ++ + LP+ K+ +G
Sbjct: 150 IKQAVFQATGLSCSIGISPNKLLSKIASELDKPDGITIIGPGDLEARIWPLPVSKVNGIG 209
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
K T L G+ T+ +L + LQ +G + WL N+ARGI V PKS
Sbjct: 210 PKANTRLAAA-GINTIAELAAAPPELLQSLFGLSYAQWLMNVARGIDNRPVVTYSEPKSI 268
Query: 183 GSGKSFPGPRAL-----KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+F R L + V SVQ QLCE+L DL + + T+ +
Sbjct: 269 SRETTF--ERDLHVQHDRKVLSVQFL--QLCEQLE----GDLLRKGYVGRTIGI 314
>gi|187920545|ref|YP_001889577.1| DNA-directed DNA polymerase [Burkholderia phytofirmans PsJN]
gi|187718983|gb|ACD20206.1| DNA-directed DNA polymerase [Burkholderia phytofirmans PsJN]
Length = 381
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +L+ V + T TCS GIA NK+LAKL S + KP T + ++ + + KK+
Sbjct: 142 IARKLKSAVFEATNLTCSVGIAPNKLLAKLCSDIQKPDGITILRLEDLQARIWPMAAKKI 201
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L LG+TT+G++ SE L E +G + G WL ++ G+ V
Sbjct: 202 NGIGPKANAKL-TSLGITTIGEIAACSEQWLIEQFGRSYGAWLHRVSHGLDDRPVVTHSE 260
Query: 179 PKSHGSGKSFPGPRALKTVASVQHW--LNQLCEELSERLCSDLEQNKRIAHTLTL 231
P S +F + + +V+H L L E++ DL++ +A + +
Sbjct: 261 PVSMSRETTFE-----QDLHAVRHRQELGTAFTRLCEQVALDLQRKGYLARRIGI 310
>gi|345882594|ref|ZP_08834057.1| DNA polymerase IV [Prevotella sp. C561]
gi|345044625|gb|EGW48656.1| DNA polymerase IV [Prevotella sp. C561]
Length = 358
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 44 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 103
D K + V I E++ ++L+ T T SAGI+ NK+LAK+AS M KP TV
Sbjct: 98 LDVTDNKKGIELAVDIAKEIKQKILERTSLTASAGISFNKLLAKIASDMRKPNGIFTVHP 157
Query: 104 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 163
+ SLP++K+ +G K + +E+GV T L + S + L + +G G ++
Sbjct: 158 DRALDFIGSLPVEKLWGVGPKTANRM-HEMGVFTGAQLRRISCEHLVQVFG-KMGRVYYD 215
Query: 164 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 223
+RGI V KS G ++F + T ++ L + EL ER +E+
Sbjct: 216 FSRGIDNRPVVVAYERKSVGCERTFLEDLHIDTKIIIE--LYHIVLELVER----IERKD 269
Query: 224 RIAHTLTL 231
TLTL
Sbjct: 270 FRGRTLTL 277
>gi|313892314|ref|ZP_07825907.1| putative DNA polymerase IV [Dialister microaerophilus UPII 345-E]
gi|313119452|gb|EFR42651.1| putative DNA polymerase IV [Dialister microaerophilus UPII 345-E]
Length = 409
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 9/182 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
+R ++ ++ T S GIA NK LAK+AS MNKP T +P+ K + LP++ + +G
Sbjct: 126 IRNEIKEKLHLTASVGIAPNKFLAKIASDMNKPDGLTIIPYGKEKETIAPLPVRALWGVG 185
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+L + G T+GD+ K + D+ + G N G L+ +A+G+ EV A PKS
Sbjct: 186 RVTEKTLLKQ-GYKTIGDIQKENYDRFCKKTG-NIGKNLYLLAQGVDNREVTAEQAPKSI 243
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 242
G ++ K ++ L C+ +++R L + K A T+TL F+S +
Sbjct: 244 GDETTYAYDIFEK--EDIERKLIIHCDIVAQR----LREKKMSARTITLRVR-FESFKTI 296
Query: 243 SR 244
+R
Sbjct: 297 TR 298
>gi|195499016|ref|XP_002096768.1| GE25854 [Drosophila yakuba]
gi|194182869|gb|EDW96480.1| GE25854 [Drosophila yakuba]
Length = 737
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 42 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 101
C C R LA G I E+R ++ TC AGIA+NK+LAKL +KP QQT +
Sbjct: 153 CDCGCAQR---LAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVL 209
Query: 102 PFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 160
+ + + L +K++ +G K L E G++++ L + D +++ +GF T T
Sbjct: 210 VSTYAEQFMRELGDLKRVTGIGQK-TQCLLLEAGMSSIEQLQQCDMDVMRKKFGFETATR 268
Query: 161 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 220
L ++A G V+ PK+ G + P +++T V+ L + L E++ D
Sbjct: 269 LRDLAFGRDTSSVRPTGKPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGR 325
Query: 221 QNKRIAHTLTLHASAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 262
I L S K+S ++++ F + CP G +K+Q
Sbjct: 326 VPIAIKVVLRKFDSQKKTSHRETKQANILPSLFKTSVCPGETGVSKVQ 373
>gi|67526903|ref|XP_661513.1| hypothetical protein AN3909.2 [Aspergillus nidulans FGSC A4]
gi|40740028|gb|EAA59218.1| hypothetical protein AN3909.2 [Aspergillus nidulans FGSC A4]
gi|259481519|tpe|CBF75115.1| TPA: deoxycytidyl transferase (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 1139
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ +LR + +ET S GI N + AK+A KPA Q + +V + LP++ +
Sbjct: 477 VAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGELPVQNL 536
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G L L++ LGV V D+ S +KL S G TG L + ARGI EV +
Sbjct: 537 PGVGYSLSAKLED-LGVKIVKDIRDLSREKLSSSLGPKTGAKLADYARGIDRTEVGNEVT 595
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 225
KS + ++ G R + T + ++ LCEEL RL +L + +++
Sbjct: 596 RKSVSAEVNW-GIRFV-TQDQAEDFMRSLCEELHRRLVENLMKGQQL 640
>gi|429743284|ref|ZP_19276854.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
gi|429165943|gb|EKY07963.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
Length = 360
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R + ET T SAGIA NK LAK+AS NKP Q ++P + L +LP+ K+
Sbjct: 123 IARLIRADIRSETGLTASAGIAANKFLAKIASDWNKPDGQFSLPPQKSEAFLATLPLGKI 182
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 174
+ GK+ + LG++T GDL +FS +L +G G L+++ARG V+
Sbjct: 183 PGV-GKVTLQKMHRLGLSTAGDLRRFSRGELANLFG-KWGYRLYDLARGTDNRPVK 236
>gi|386333331|ref|YP_006029500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
gi|334195778|gb|AEG68963.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
Length = 362
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 52 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 111
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 179
Query: 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 171
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 172 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
VQ + KS +++ L+T+ + L L ++L+ R+
Sbjct: 238 PVQPSQIRKSVSVEETYATD--LRTLDDCRRELTVLVDQLAARV 279
>gi|387784781|ref|YP_006070864.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
gi|338745663|emb|CCB96029.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
Length = 369
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VRPNRVRKSIGSERTY 262
>gi|431797762|ref|YP_007224666.1| nucleotidyltransferase/DNA polymerase [Echinicola vietnamensis DSM
17526]
gi|430788527|gb|AGA78656.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Echinicola vietnamensis DSM 17526]
Length = 398
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 34 KATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 93
K+++ E+ D D+ C + ELR +++KET S G++ NK ++K+A+G
Sbjct: 103 KSSIDEFYI--DYSGMDRFFGC-FKMAHELRQKIIKETGLPISLGLSENKTVSKVATGEA 159
Query: 94 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 153
KP + VP+ S K L L I+K+ +G K SL +GV + L ++ L+ ++
Sbjct: 160 KPNNEKEVPYGSEKPFLAPLSIRKIPMIGEKTAHSLYG-MGVKKIQTLQTMPQELLESAF 218
Query: 154 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 213
G N G LWN A GI ++ ++P S S + T+ L ++E
Sbjct: 219 GKN-GKLLWNKANGID----KSLVVPYSEAKSISTENTFSQDTIDV--KMLEATLVAMTE 271
Query: 214 RLCSDLEQNKRIAHTLTLHASA-FKSSDSDS 243
+L + L +N H LT AS + SD D+
Sbjct: 272 QLATKLRKN----HQLTCCASVKIRYSDFDT 298
>gi|340399531|ref|YP_004728556.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
gi|338743524|emb|CCB94034.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
Length = 368
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LPI
Sbjct: 132 AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPI 191
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISNSPVRP 249
Query: 176 RLLPKSHGSGKSF 188
+ KS GS +++
Sbjct: 250 NRVRKSIGSERTY 262
>gi|147781854|emb|CAN67721.1| hypothetical protein VITISV_006020 [Vitis vinifera]
Length = 500
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ + +R ++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK
Sbjct: 367 LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKA 426
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 173
+ +G L L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 427 LPGIGHVLEEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVV 481
>gi|418936247|ref|ZP_13489976.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
gi|375056985|gb|EHS53180.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
Length = 359
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++LP+KK
Sbjct: 126 IALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKKF 185
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G ++ G+ T DL S LQ+ +G +G + + IARGI V+ +
Sbjct: 186 HGVGPATAERMKQH-GIETGLDLKSKSLAFLQQHFG-KSGPYFYGIARGIDERRVRPDRI 243
Query: 179 PKSHGSGKSF 188
KS G+ +F
Sbjct: 244 RKSVGAEDTF 253
>gi|339998282|ref|YP_004729165.1| hypothetical protein SBG_0256 [Salmonella bongori NCTC 12419]
gi|339511643|emb|CCC29352.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella bongori NCTC 12419]
Length = 351
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ V L +LP+ K+ + GK+ + +G+ T GD+ + L + +G G
Sbjct: 163 VITPDDVPDFLKTLPLVKIPGV-GKVSAAKLESMGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 ILWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHKWSD--CESIIEHLYPEL 270
Query: 220 EQN 222
E+
Sbjct: 271 ERR 273
>gi|424778602|ref|ZP_18205549.1| DNA-directed DNA polymerase [Alcaligenes sp. HPC1271]
gi|422886604|gb|EKU29019.1| DNA-directed DNA polymerase [Alcaligenes sp. HPC1271]
Length = 389
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 7/226 (3%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
+ ++R V + T TCS GI NK+L+K+AS +NKP + V + L + K+
Sbjct: 148 LAEQIRQAVNQATGLTCSVGITPNKLLSKIASELNKPNGACVLTMDDVPTRIWPLAVGKI 207
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L E+G+ +G+L +KLQE +G WL +A+G +
Sbjct: 208 NGIGPKSVVKL-TEMGIQKIGELAATPAEKLQEQFGLRYAQWLMAVAQGQDERPLSTDRT 266
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
PKS +F R L V + L+ + E L E+L DL ++ A T+ + K
Sbjct: 267 PKSISRETTF--ERDLH-VRMDRSRLSAVLESLCEKLEQDLRKSAMCAQTIGIK---LKF 320
Query: 239 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKT 284
D + + S P+ A + NL +A L L GVK
Sbjct: 321 EDFKTVTRDLSLPAPVLAADAILAAARQNLKRAVLDRRLRLLGVKA 366
>gi|359687051|ref|ZP_09257052.1| DNA polymerase IV [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751085|ref|ZP_13307371.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
gi|418757063|ref|ZP_13313251.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384116734|gb|EIE02991.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404273688|gb|EJZ41008.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
Length = 367
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 6/192 (3%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D K + + E+R ++ +ET+ T SAG++ NK LAK+A+ NKP T V
Sbjct: 109 DVTQNKKNIPYATQVAKEIREKIFEETQLTASAGVSINKFLAKIATDQNKPNGMTIVRPE 168
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
V+ ++SL + + GK+ + LG+ DL + S + L +++G +G W + +
Sbjct: 169 QVEKFIESLDVSVFPGI-GKVTLKKMHALGIKKGKDLKEKSLEMLDQNFG-KSGRWFYAV 226
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RG+ V+ KS G+ +F + L+ + + L+ + EEL RL K
Sbjct: 227 CRGLDDRPVEPFRERKSLGAESTF--AKDLENSSEIFRELSDIAEELERRLLQKPFPGKT 284
Query: 225 IAHTLTLHASAF 236
I TL + S F
Sbjct: 285 I--TLKVKFSDF 294
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,375,102,921
Number of Sequences: 23463169
Number of extensions: 391417240
Number of successful extensions: 936150
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3788
Number of HSP's successfully gapped in prelim test: 2452
Number of HSP's that attempted gapping in prelim test: 923270
Number of HSP's gapped (non-prelim): 10188
length of query: 591
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 443
effective length of database: 8,886,646,355
effective search space: 3936784335265
effective search space used: 3936784335265
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 80 (35.4 bits)