BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007746
(591 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1
Length = 713
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 39 EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 95
+WL D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP
Sbjct: 173 QWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKP 232
Query: 96 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155
+QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 233 NRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE 292
Query: 156 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 293 KNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 352
Query: 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 270
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 353 TKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1
Length = 694
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 150/279 (53%), Gaps = 14/279 (5%)
Query: 45 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104
D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 181 DPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 240
Query: 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 164
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+ +
Sbjct: 241 SVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAM 300
Query: 165 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 301 CRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDNDR 360
Query: 225 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 283
+A L + D R + C L RY K+ +D F A +R + G++
Sbjct: 361 VATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQ 411
Query: 284 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 322
T+ S +T L + A+K C+ + F D
Sbjct: 412 TEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 446
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eso1 PE=1 SV=1
Length = 872
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 47 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 106
D D L IV E+R + + ++TCSAG++ N ML+KL S NKP +QT + +++
Sbjct: 210 DWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNAI 269
Query: 107 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166
+ L SL I ++ LGGK G + N LG ++ D+ S D L + G G +WN+
Sbjct: 270 QDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCH 329
Query: 167 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
GI E+ ++ KS S K+F + +K+ +W +L R +LE +R
Sbjct: 330 GIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASDLRSRFL-ELEGMRR 385
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
++ + +R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+
Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGT 551
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ +G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 552 LPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQ 610
Query: 178 LPKSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 233
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 611 ESKSIGAEVNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKI 664
Query: 234 SAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 291
K + K C R T D + Q ++ GSF + + G
Sbjct: 665 KKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVG 724
Query: 292 WRITAL 297
+++ L
Sbjct: 725 LQVSKL 730
>sp|P58963|DPO4_ESCFE DNA polymerase IV (Fragment) OS=Escherichia fergusonii GN=dinB PE=3
SV=1
Length = 331
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 110 LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAK 169
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 170 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 227
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 228 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 262
>sp|Q83M86|DPO4_SHIFL DNA polymerase IV OS=Shigella flexneri GN=dinB PE=3 SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q1RFU0|DPO4_ECOUT DNA polymerase IV OS=Escherichia coli (strain UTI89 / UPEC) GN=dinB
PE=3 SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q0TL85|DPO4_ECOL5 DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A1A7U2|DPO4_ECOK1 DNA polymerase IV OS=Escherichia coli O1:K1 / APEC GN=dinB PE=3
SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q3Z5A4|DPO4_SHISS DNA polymerase IV OS=Shigella sonnei (strain Ss046) GN=dinB PE=3
SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q47155|DPO4_ECOLI DNA polymerase IV OS=Escherichia coli (strain K12) GN=dinB PE=1
SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B1J100|DPO4_ECOLC DNA polymerase IV OS=Escherichia coli (strain ATCC 8739 / DSM 1576
/ Crooks) GN=dinB PE=3 SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B2U3S3|DPO4_SHIB3 DNA polymerase IV OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=dinB PE=3 SV=1
Length = 354
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 124 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 184 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 242 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 276
>sp|A7ZHZ2|DPO4_ECO24 DNA polymerase IV OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=dinB PE=3 SV=1
Length = 351
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|P59477|DPO4_ECOL6 DNA polymerase IV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q32J17|DPO4_SHIDS DNA polymerase IV OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=dinB PE=3 SV=1
Length = 351
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZWJ6|DPO4_ECOHS DNA polymerase IV OS=Escherichia coli O9:H4 (strain HS) GN=dinB
PE=3 SV=1
Length = 351
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q5PF76|DPO4_SALPA DNA polymerase IV OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=dinB PE=3 SV=1
Length = 351
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>sp|Q0TQ38|DPO4_CLOP1 DNA polymerase IV OS=Clostridium perfringens (strain ATCC 13124 /
NCTC 8237 / Type A) GN=dinB PE=3 SV=1
Length = 359
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 216
+ KS GK ++ + + L ++ E +SE LC
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLC 278
>sp|Q57SU1|DPO4_SALCH DNA polymerase IV OS=Salmonella choleraesuis (strain SC-B67)
GN=dinB PE=3 SV=1
Length = 351
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q8X7Q1|DPO4_ECO57 DNA polymerase IV OS=Escherichia coli O157:H7 GN=dinB PE=3 SV=1
Length = 351
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 58 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 117
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 180
Query: 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 177
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 178 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 222
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q6GFG2|DPO4_STAAR DNA polymerase IV OS=Staphylococcus aureus (strain MRSA252) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>sp|Q2YU32|DPO4_STAAB DNA polymerase IV OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=dinB PE=3 SV=1
Length = 328
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q8DXW9|DPO4_STRA5 DNA polymerase IV OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=dinB PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 139 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVG 198
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LGV T DLL SE L + +G G L+ ARGI+ V+ + KS
Sbjct: 199 KRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSI 256
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 257 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q8E3I8|DPO4_STRA3 DNA polymerase IV OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=dinB PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 139 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVG 198
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LGV T DLL SE L + +G G L+ ARGI+ V+ + KS
Sbjct: 199 KRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSI 256
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 257 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q3JZG9|DPO4_STRA1 DNA polymerase IV OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=dinB PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 63 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 122
++ + + TCSAGI++NK LAKLAS KP T + + L LPI+K +G
Sbjct: 139 IQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVG 198
Query: 123 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 182
+ L + LGV T DLL SE L + +G G L+ ARGI+ V+ + KS
Sbjct: 199 KRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSI 256
Query: 183 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 257 GSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q67QM6|DPO4_SYMTH DNA polymerase IV OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=dinB PE=3 SV=1
Length = 361
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
V + EL+ + E T SAG+++ K LAKLAS M KP T + + + LL +LP+
Sbjct: 117 AVRVARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPV 176
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
+K+ +G +L + LG+ T GDLL + D L++ +G L +ARGI V
Sbjct: 177 RKLWGVGPASEQAL-HALGIYTCGDLLAYDPDTLRKHFG-KRADELILLARGIDPRPVVP 234
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G +FP + + +L++L E ++ L +L + A T+T+
Sbjct: 235 YREAKSIGEENTFP------VDQTDREYLSRLLERYADNLAEELRRQGLYARTVTV 284
>sp|A5IU61|DPO4_STAA9 DNA polymerase IV OS=Staphylococcus aureus (strain JH9) GN=dinB
PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A6U2Z9|DPO4_STAA2 DNA polymerase IV OS=Staphylococcus aureus (strain JH1) GN=dinB
PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|P63992|DPO4_STAAN DNA polymerase IV OS=Staphylococcus aureus (strain N315) GN=dinB
PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|P63991|DPO4_STAAM DNA polymerase IV OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=dinB PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A7X420|DPO4_STAA1 DNA polymerase IV OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=dinB PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 179 PKSHGSGKSF 188
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A4TPK8|DPO4_YERPP DNA polymerase IV OS=Yersinia pestis (strain Pestoides F) GN=dinB
PE=3 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>sp|Q1CLD4|DPO4_YERPN DNA polymerase IV OS=Yersinia pestis bv. Antiqua (strain Nepal516)
GN=dinB PE=3 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>sp|Q8ZBZ9|DPO4_YERPE DNA polymerase IV OS=Yersinia pestis GN=dinB PE=3 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>sp|Q1C4D9|DPO4_YERPA DNA polymerase IV OS=Yersinia pestis bv. Antiqua (strain Antiqua)
GN=dinB PE=3 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 53 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 109
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 170 GEEVQARLLPKSHGSGKSF 188
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a)
GN=dinB PE=3 SV=1
Length = 364
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRV 183
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>sp|A9MNS1|DPO4_SALAR DNA polymerase IV OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=dinB PE=3 SV=1
Length = 351
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDTPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ + GK+ + +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGV-GKVSAAKLESMGLITCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + ERL +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIERLYPEL 270
Query: 220 EQN 222
E+
Sbjct: 271 ERR 273
>sp|P63989|DPO4_SALTY DNA polymerase IV OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=dinB PE=3 SV=1
Length = 351
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>sp|P63990|DPO4_SALTI DNA polymerase IV OS=Salmonella typhi GN=dinB PE=3 SV=1
Length = 351
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>sp|A9MY13|DPO4_SALPB DNA polymerase IV OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=dinB PE=3 SV=1
Length = 351
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 40 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 99
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 100 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 159
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 160 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 219
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 220 EQNKRIA 226
E+ I
Sbjct: 271 ERRLAIV 277
>sp|A1JNY3|DPO4_YERE8 DNA polymerase IV OS=Yersinia enterocolitica serotype O:8 / biotype
1B (strain 8081) GN=dinB PE=3 SV=1
Length = 352
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 56 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 115
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQAIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPL 178
Query: 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 175
K+ +G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 176 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 224
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>sp|P58965|DPO4_THETN DNA polymerase IV OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=dinB PE=3 SV=1
Length = 384
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 19/255 (7%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I E++ +V T T S GI++NK LAKLAS NKP + V +L LP+ K+
Sbjct: 119 IALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKV 178
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G K L++ +G+ TV DLLK ++ L E +G TG ++N RGI V+
Sbjct: 179 HGIGEKSAEKLRS-IGIETVEDLLKLPQENLIELFG-KTGVEIYNRIRGIDERPVETMRE 236
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 238
KS G K+ L+ + L Q +E SE + +L + + T+T+ K+
Sbjct: 237 IKSIGKEKT------LEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVK---IKT 287
Query: 239 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRIT 295
+D K + +R+ ED + + + L E+ V+ G S+ S +
Sbjct: 288 ADFAVHTKSKTVDKYIRFS-----EDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYE 342
Query: 296 ALSVSASKIVPVLSG 310
LS ++V V+
Sbjct: 343 QLSFLDKRLVKVIKA 357
>sp|Q5LYC2|DPO4_STRT1 DNA polymerase IV OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=dinB PE=3 SV=1
Length = 367
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 53 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 112
+ V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+
Sbjct: 129 IKSAVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFLEK 188
Query: 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 172
LPI+K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSP 246
Query: 173 VQARLLPKSHGSGKSF 188
V+ + KS GS +++
Sbjct: 247 VKPNRVRKSIGSERTY 262
>sp|Q18A91|DPO4_CLOD6 DNA polymerase IV OS=Clostridium difficile (strain 630) GN=dinB
PE=3 SV=1
Length = 365
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 59 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 118
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184
Query: 119 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 178
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 185 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 242
Query: 179 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 243 RKSVGAETTLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,027,673
Number of Sequences: 539616
Number of extensions: 9403382
Number of successful extensions: 22402
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 21724
Number of HSP's gapped (non-prelim): 460
length of query: 591
length of database: 191,569,459
effective HSP length: 123
effective length of query: 468
effective length of database: 125,196,691
effective search space: 58592051388
effective search space used: 58592051388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)