Query 007746
Match_columns 591
No_of_seqs 267 out of 1679
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gqc_A DNA repair protein REV1 100.0 8.9E-48 3E-52 422.5 21.0 261 27-308 230-499 (504)
2 1jx4_A DNA polymerase IV (fami 100.0 5.7E-48 1.9E-52 406.4 18.5 259 26-319 93-351 (352)
3 3bq0_A POL IV, DBH, DNA polyme 100.0 1.1E-47 3.7E-52 404.6 19.3 258 26-319 93-353 (354)
4 4f4y_A POL IV, DNA polymerase 100.0 1E-47 3.5E-52 406.8 18.6 260 26-320 93-354 (362)
5 3osn_A DNA polymerase IOTA; ho 100.0 5.4E-47 1.8E-51 408.7 21.5 262 27-308 115-417 (420)
6 4dez_A POL IV 1, DNA polymeras 100.0 1.3E-47 4.6E-52 404.1 11.4 251 26-307 95-346 (356)
7 3pzp_A DNA polymerase kappa; D 100.0 3.1E-45 1.1E-49 404.0 21.8 234 51-308 273-509 (517)
8 4ecq_A DNA polymerase ETA; tra 100.0 3.3E-45 1.1E-49 396.3 20.8 237 57-306 197-434 (435)
9 2aq4_A DNA repair protein REV1 100.0 7.1E-45 2.4E-49 393.4 18.6 257 29-306 154-433 (434)
10 3mfi_A DNA polymerase ETA; DNA 100.0 8.7E-45 3E-49 400.6 18.5 237 55-308 247-517 (520)
11 1t94_A Polymerase (DNA directe 100.0 1.9E-45 6.5E-50 400.4 12.4 230 55-308 222-453 (459)
12 1im4_A DBH; DNA polymerase PAL 100.0 2.7E-29 9.3E-34 249.3 6.7 123 26-151 98-221 (221)
13 1unn_C POL IV, DNA polymerase 99.2 2.5E-11 8.6E-16 108.0 7.8 99 180-307 5-106 (115)
14 1wcn_A Transcription elongatio 96.3 0.0026 9E-08 51.9 3.6 53 114-167 8-62 (70)
15 2a1j_A DNA repair endonuclease 96.3 0.0068 2.3E-07 48.3 5.8 51 115-167 6-57 (63)
16 2kwv_A RAD30 homolog B, DNA po 95.6 0.0056 1.9E-07 45.8 2.3 21 544-564 14-34 (48)
17 1z00_B DNA repair endonuclease 95.0 0.019 6.5E-07 48.5 4.2 51 115-167 20-71 (84)
18 3bqs_A Uncharacterized protein 94.5 0.024 8.2E-07 48.8 3.6 35 114-149 5-39 (93)
19 3mab_A Uncharacterized protein 94.2 0.04 1.4E-06 47.4 4.3 34 114-148 5-38 (93)
20 1b22_A DNA repair protein RAD5 92.5 0.062 2.1E-06 47.9 2.8 56 112-168 22-81 (114)
21 1z3e_B DNA-directed RNA polyme 92.1 0.17 5.7E-06 41.6 4.7 53 111-165 7-61 (73)
22 2a1j_B DNA excision repair pro 91.9 0.2 7E-06 42.1 5.3 51 115-167 34-86 (91)
23 1kft_A UVRC, excinuclease ABC 91.8 0.11 3.7E-06 42.5 3.3 51 113-165 24-76 (78)
24 1z00_A DNA excision repair pro 91.7 0.18 6.3E-06 42.1 4.7 51 115-167 21-73 (89)
25 3gfk_B DNA-directed RNA polyme 90.8 0.17 5.9E-06 42.2 3.6 54 108-163 11-66 (79)
26 2khu_A Immunoglobulin G-bindin 89.3 0.14 4.6E-06 44.3 1.8 29 545-573 67-96 (108)
27 1vq8_Y 50S ribosomal protein L 89.1 0.073 2.5E-06 53.2 0.0 53 113-166 15-69 (241)
28 3k4g_A DNA-directed RNA polyme 88.9 0.53 1.8E-05 39.8 5.1 54 111-166 10-65 (86)
29 2va8_A SSO2462, SKI2-type heli 87.8 0.29 9.9E-06 55.1 3.7 52 113-166 657-708 (715)
30 2nrt_A Uvrabc system protein C 87.5 0.53 1.8E-05 46.4 4.9 50 113-164 168-218 (220)
31 2kz3_A Putative uncharacterize 87.3 1.4 4.9E-05 36.9 6.8 44 112-156 3-46 (83)
32 1pzn_A RAD51, DNA repair and r 86.1 0.99 3.4E-05 46.8 6.4 54 112-166 34-89 (349)
33 1ci4_A Protein (barrier-TO-aut 85.8 0.51 1.8E-05 40.1 3.3 33 110-143 15-47 (89)
34 3im1_A Protein SNU246, PRE-mRN 85.7 0.92 3.1E-05 46.7 5.9 61 113-174 157-219 (328)
35 2i1q_A DNA repair and recombin 85.3 0.97 3.3E-05 45.7 5.7 54 113-167 3-58 (322)
36 2p6r_A Afuhel308 helicase; pro 84.6 0.43 1.5E-05 53.7 3.0 52 113-166 632-683 (702)
37 2q0z_X Protein Pro2281; SEC63, 84.2 1.3 4.6E-05 45.7 6.3 60 113-173 161-222 (339)
38 1coo_A RNA polymerase alpha su 84.0 0.61 2.1E-05 40.4 3.0 52 113-166 24-77 (98)
39 1x2i_A HEF helicase/nuclease; 82.8 1.1 3.8E-05 35.4 4.0 51 115-167 16-68 (75)
40 2zj8_A DNA helicase, putative 80.9 1.3 4.3E-05 50.1 4.9 53 113-166 646-700 (720)
41 1ixr_A Holliday junction DNA h 76.8 1.1 3.9E-05 43.0 2.5 55 114-168 73-130 (191)
42 1gm5_A RECG; helicase, replica 74.2 1.4 4.8E-05 50.9 2.8 31 113-144 115-145 (780)
43 3lda_A DNA repair protein RAD5 73.0 3.9 0.00013 43.4 5.7 57 109-166 77-137 (400)
44 2bgw_A XPF endonuclease; hydro 71.9 3 0.0001 40.2 4.2 50 115-166 164-215 (219)
45 2fmp_A DNA polymerase beta; nu 71.1 2.1 7.2E-05 44.5 3.0 65 54-144 64-128 (335)
46 1cuk_A RUVA protein; DNA repai 69.5 2.6 8.8E-05 40.9 3.0 55 114-168 74-131 (203)
47 1dgs_A DNA ligase; AMP complex 68.7 3.8 0.00013 46.5 4.6 51 114-164 442-494 (667)
48 2z43_A DNA repair and recombin 68.5 1 3.5E-05 45.9 0.0 42 113-155 12-53 (324)
49 2owo_A DNA ligase; protein-DNA 66.8 4.7 0.00016 45.8 4.9 52 113-164 446-499 (671)
50 2bcq_A DNA polymerase lambda; 64.4 3.8 0.00013 42.6 3.3 28 116-144 99-126 (335)
51 2e8m_A Epidermal growth factor 64.1 9.2 0.00031 33.1 5.0 52 103-166 36-87 (99)
52 3ai4_A Yeast enhanced green fl 63.5 2 6.8E-05 43.5 1.0 24 544-567 249-273 (283)
53 3c65_A Uvrabc system protein C 62.9 1.5 5.3E-05 43.3 0.0 52 112-165 172-224 (226)
54 2ihm_A POL MU, DNA polymerase 60.8 4.7 0.00016 42.3 3.3 28 115-143 104-131 (360)
55 1u9l_A Transcription elongatio 60.3 9.3 0.00032 30.8 4.2 48 118-166 11-60 (70)
56 2duy_A Competence protein come 59.9 5.7 0.0002 31.7 2.9 30 115-144 29-58 (75)
57 1jms_A Terminal deoxynucleotid 59.4 5.2 0.00018 42.3 3.3 28 115-143 123-150 (381)
58 2w9m_A Polymerase X; SAXS, DNA 55.9 4 0.00014 45.3 1.8 29 115-144 99-127 (578)
59 4glx_A DNA ligase; inhibitor, 53.8 11 0.00037 42.2 4.8 51 115-166 448-501 (586)
60 4f92_B U5 small nuclear ribonu 53.5 8.7 0.0003 48.1 4.4 60 113-173 1557-1618(1724)
61 3sei_A Caskin-1; SAM domain, p 51.2 11 0.00037 34.6 3.6 76 69-156 48-123 (149)
62 2ztd_A Holliday junction ATP-d 51.1 11 0.00037 36.8 3.8 52 118-169 93-147 (212)
63 4gfj_A Topoisomerase V; helix- 49.8 13 0.00045 40.0 4.4 50 115-169 470-519 (685)
64 1v5w_A DMC1, meiotic recombina 46.1 4.2 0.00015 41.8 0.0 52 114-166 26-81 (343)
65 3b0x_A DNA polymerase beta fam 45.3 7.9 0.00027 42.8 2.0 62 102-170 117-179 (575)
66 1wwu_A Hypothetical protein FL 44.7 25 0.00085 30.4 4.6 53 103-166 26-78 (99)
67 2bcq_A DNA polymerase lambda; 37.1 15 0.00053 37.9 2.5 52 115-171 59-120 (335)
68 3b0x_A DNA polymerase beta fam 36.4 18 0.00062 40.0 3.1 53 115-167 95-150 (575)
69 2edu_A Kinesin-like protein KI 34.2 23 0.0008 29.7 2.8 29 116-144 43-75 (98)
70 3vdp_A Recombination protein R 34.1 23 0.00077 34.6 3.0 16 115-130 28-43 (212)
71 3arc_U Photosystem II 12 kDa e 31.9 29 0.00098 29.7 3.0 30 115-144 28-57 (97)
72 2w9m_A Polymerase X; SAXS, DNA 31.8 16 0.00054 40.6 1.6 77 78-169 104-181 (578)
73 3r8n_M 30S ribosomal protein S 31.1 30 0.001 30.5 3.1 36 115-150 18-53 (114)
74 3u5c_S 40S ribosomal protein S 29.5 30 0.001 31.9 2.8 40 113-152 30-72 (146)
75 2ihm_A POL MU, DNA polymerase 29.4 36 0.0012 35.5 3.9 55 115-171 63-126 (360)
76 4f92_B U5 small nuclear ribonu 28.9 49 0.0017 41.5 5.5 61 112-174 725-786 (1724)
77 2owo_A DNA ligase; protein-DNA 28.3 43 0.0015 38.0 4.4 13 55-67 432-444 (671)
78 1vdd_A Recombination protein R 28.1 31 0.0011 34.0 2.8 16 115-130 14-29 (228)
79 1jms_A Terminal deoxynucleotid 26.0 45 0.0015 35.1 3.9 55 115-171 82-145 (381)
80 2xzm_M RPS18E; ribosome, trans 26.0 35 0.0012 31.8 2.6 41 114-154 31-74 (155)
81 3iz6_M 40S ribosomal protein S 25.9 38 0.0013 31.4 2.8 36 115-150 30-68 (152)
82 1s5l_U Photosystem II 12 kDa e 25.2 45 0.0015 30.3 3.1 40 99-145 55-95 (134)
83 2fmp_A DNA polymerase beta; nu 25.2 39 0.0013 34.9 3.1 55 115-171 59-122 (335)
84 3tvk_A DGC, diguanylate cyclas 24.0 29 0.001 32.3 1.8 46 32-81 77-130 (179)
85 2vqe_M 30S ribosomal protein S 23.1 33 0.0011 30.8 1.8 29 115-143 19-50 (126)
86 1dgs_A DNA ligase; AMP complex 22.2 71 0.0024 36.2 4.7 55 106-165 503-559 (667)
87 3j20_O 30S ribosomal protein S 22.0 36 0.0012 31.4 1.9 39 115-153 25-66 (148)
88 3idw_A Actin cytoskeleton-regu 21.7 22 0.00076 29.0 0.4 36 527-562 12-47 (72)
89 3h7h_A Transcription elongatio 21.3 44 0.0015 29.8 2.3 28 537-564 71-106 (120)
90 3c1y_A DNA integrity scanning 21.2 52 0.0018 34.8 3.1 47 115-163 317-365 (377)
91 2a6h_A DNA-directed RNA polyme 20.6 21 0.00072 36.8 0.0 48 112-161 253-302 (315)
92 3lu0_A DNA-directed RNA polyme 20.3 22 0.00074 37.0 0.0 46 113-160 255-302 (329)
No 1
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=8.9e-48 Score=422.51 Aligned_cols=261 Identities=21% Similarity=0.267 Sum_probs=237.9
Q ss_pred cCCCCCCccchhhhhhcCCCCchhhhcc-hHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEecccc
Q 007746 27 SKDGNDSKATVKEWLCRCDADHRDKLLA-CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105 (591)
Q Consensus 27 ~~~~~~~~ySIDE~fl~lDvt~~~~l~~-~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~ 105 (591)
.+.+..++|||||+|+ |+|++.++|+ ++..+|++||++|+++||||||||||+||+|||||++++||+|+++|++++
T Consensus 230 ~~tp~VE~~SiDEafL--Dvtg~~~l~g~~~~~la~~Ir~~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~~ 307 (504)
T 3gqc_A 230 SYTHNIEAVSCDEALV--DITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEE 307 (504)
T ss_dssp TTCSCEEEEETTEEEE--ECHHHHHHHCCCHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGGG
T ss_pred HhCCeEEEecCCeEEE--eccchHhhcCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHHH
Confidence 6788899999999998 9999999997 889999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccccCCcccccc
Q 007746 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 185 (591)
Q Consensus 106 v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~e 185 (591)
+.+||+++||++|||||++++++|+ .+||+|++||+.++...|+++||+..|.+||+.|+|+|+++|.+..++|||+.+
T Consensus 308 ~~~~L~~LPV~~l~GIG~~t~~kL~-~lGI~TigDLa~~~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e 386 (504)
T 3gqc_A 308 VDDFIRGQLVTNLPGVGHSMESKLA-SLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAE 386 (504)
T ss_dssp HHHHHHHSBGGGSTTCCHHHHHHHH-HTTCCBHHHHTTSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEE
T ss_pred HHHHHhcCChhHhhCcCHHHHHHHH-HcCCCcHHHHHhccHHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeee
Confidence 9999999999999999999999996 999999999999999999999997679999999999999999988889999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeecc------cCCCCCCC--CcCceeeeCCCc
Q 007746 186 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK------SSDSDSRK--KFPSKSCPLRYG 257 (591)
Q Consensus 186 ~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLtL~ir~~~------~~~f~s~~--~~~SrS~~L~~~ 257 (591)
++|+ .++.+.+++..+|..|+++|+.||++ .++.+++|+|+|++.. +++|..++ ...+++.+|+.|
T Consensus 387 ~tf~--~d~~~~~~l~~~L~~La~~l~~rLr~----~~~~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~p 460 (504)
T 3gqc_A 387 INYG--IRFTQPKEAEAFLLSLSEEIQRRLEA----TGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQA 460 (504)
T ss_dssp ECSS--CCCCSHHHHHHHHHHHHHHHHHHHHH----TTEEEEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEE
T ss_pred eccC--CCCCCHHHHHHHHHHHHHHHHHHHHH----cCCceeEEEEEEEEecccccccccccccCCCcccceeEeecCCC
Confidence 9999 78999999999999999999999997 7999999999998742 12343222 236889999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccccccCCCCCCcceeEEEEEecCCeecC
Q 007746 258 TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 308 (591)
Q Consensus 258 T~~i~~da~~L~~aal~ll~~~~~~~~~~~~~~g~~iR~lGVsls~L~~~~ 308 (591)
|+ ++..|+++|+++|.+++ ..+.+||+|||++++|.+..
T Consensus 461 T~----d~~~I~~~A~~Ll~~~~--------~~~~~vRllGV~~s~L~~~~ 499 (504)
T 3gqc_A 461 TD----NAKIIGKAMLNMFHTMK--------LNISDMRGVGIHVNQLVPTN 499 (504)
T ss_dssp EC----CHHHHHHHHHHHHHTSC--------CCGGGEEEEEEEEEEEEECC
T ss_pred cC----CHHHHHHHHHHHHHHhc--------CCCCCeEEEEEEEcCcccCC
Confidence 94 88889999999998754 34679999999999998863
No 2
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=5.7e-48 Score=406.41 Aligned_cols=259 Identities=22% Similarity=0.297 Sum_probs=229.5
Q ss_pred ccCCCCCCccchhhhhhcCCCCchhhhcchHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEecccc
Q 007746 26 ESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105 (591)
Q Consensus 26 ~~~~~~~~~ySIDE~fl~lDvt~~~~l~~~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~ 105 (591)
..+.+..++|||||+|+ |+|++.++|+++..+|++||++|+++||||||||||+||+|||||++++||+|++++++++
T Consensus 93 ~~~tp~ve~~SiDE~~l--Dvt~~~~~~~~~~~~a~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~ 170 (352)
T 1jx4_A 93 REYSEKIEIASIDEAYL--DISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEE 170 (352)
T ss_dssp TTTCSCEEEEETTEEEE--ECTTTCSSHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHHH
T ss_pred HHhCCCeEEecCceEEE--eccCcccccccHHHHHHHHHHHHHHHHCCcEEEEEcCCHHHHHHHhccCCCCCEEEECHHH
Confidence 46888899999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccccCCcccccc
Q 007746 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 185 (591)
Q Consensus 106 v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~e 185 (591)
+.+||+++||++|||||++++++|+ .+||+|++||++++...|+++||+..|.++|++|+|+|+++|.+.. +|||+++
T Consensus 171 ~~~~L~~lpv~~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~ 248 (352)
T 1jx4_A 171 VKRLIRELDIADVPGIGNITAEKLK-KLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRI 248 (352)
T ss_dssp HHHHHHHSBGGGSTTCCHHHHHHHH-TTTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEE
T ss_pred HHHHHHhCCCCcccccCHHHHHHHH-HcCCchHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCCCCccCCC-CceEEee
Confidence 9999999999999999999999996 9999999999999999999999984399999999999999999888 9999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcchhhHHHH
Q 007746 186 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 265 (591)
Q Consensus 186 ~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T~~i~~da 265 (591)
++|+ .++.+.+++..+|..|+++|+.||++ . .+++|+|++++. +|.. .+++.+++.||+ ++
T Consensus 249 ~tf~--~~~~~~~~l~~~l~~l~~~l~~rL~~-----~-~~~~v~l~l~~~---~~~~----~~~~~~l~~pt~----~~ 309 (352)
T 1jx4_A 249 VTMK--RNSRNLEEIKPYLFRAIEESYYKLDK-----R-IPKAIHVVAVTE---DLDI----VSRGRTFPHGIS----KE 309 (352)
T ss_dssp EEEE--EEECCHHHHHHHHHHHHHHHHHHHTT-----C-CEEEEEEEEEET---TSCE----EEEEEECSSCCC----HH
T ss_pred eecC--CCCCCHHHHHHHHHHHHHHHHHHHHH-----h-cCCEEEEEEEEC---CCCc----ceeEEecCCCCC----CH
Confidence 9999 78999999999999999999999996 3 999999999984 3433 588899999984 77
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCcceeEEEEEecCCeecCCCccccccccc
Q 007746 266 FNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 319 (591)
Q Consensus 266 ~~L~~aal~ll~~~~~~~~~~~~~~g~~iR~lGVsls~L~~~~~g~~sq~~LF~ 319 (591)
..|++ +.++|.+.+. ..+.+||++||++++|.+. ..|.+||+
T Consensus 310 ~~l~~-a~~ll~~~~~-------~~~~~vr~lgv~~~~l~~~----~~q~~LF~ 351 (352)
T 1jx4_A 310 TAYSE-SVKLLQKILE-------EDERKIRRIGVRFSKFIEA----IGLDKFFD 351 (352)
T ss_dssp HHHHH-HHHHHHHHHH-------HCCSCEEEEEEEEEEEC--------------
T ss_pred HHHHH-HHHHHHHHHh-------cCCCCEEEEEEEEeCCCCc----cccccccc
Confidence 78888 8888877541 0367999999999999875 34788885
No 3
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=1.1e-47 Score=404.60 Aligned_cols=258 Identities=20% Similarity=0.302 Sum_probs=229.4
Q ss_pred ccCCCCCCccchhhhhhcCCCCchhh-hcchHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccc
Q 007746 26 ESKDGNDSKATVKEWLCRCDADHRDK-LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104 (591)
Q Consensus 26 ~~~~~~~~~ySIDE~fl~lDvt~~~~-l~~~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~ 104 (591)
..+.+..++|||||+|+ |+|++.+ +|+++..+|++||++|+++||||||||||+||+|||||++++||+|+++++++
T Consensus 93 ~~~tp~ve~~SiDE~~l--Dvt~~~~~~~~~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~ 170 (354)
T 3bq0_A 93 NKHADKIEVASIDEAYL--DVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT 170 (354)
T ss_dssp HTTCSEEEEEETTEEEE--ECTTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSSCEEECCGG
T ss_pred HHhCCCEEEecCCeeEE--ecCcchhhccCCHHHHHHHHHHHHHHHHCCcEEeeeccCHHHHHHHhccCCCCCEEEECHH
Confidence 36888899999999998 9999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccccCCccccc
Q 007746 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 184 (591)
Q Consensus 105 ~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~ 184 (591)
++.+||+++||++|||||++++++|+ .+||+|+|||++++...|+++||+..|.++|++|+|+|+++|.+.. +|||++
T Consensus 171 ~~~~~L~~lpv~~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~ 248 (354)
T 3bq0_A 171 EVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGR 248 (354)
T ss_dssp GHHHHHHHCBSTTSTTCCHHHHHHHT-TTTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEE
T ss_pred HHHHHHHhCCcccccCcCHHHHHHHH-HcCCccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEE
Confidence 99999999999999999999999996 9999999999999999999999984399999999999999999888 999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcchhhHHH
Q 007746 185 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQED 264 (591)
Q Consensus 185 e~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T~~i~~d 264 (591)
+++|+ .++.+.+++..+|..|+++|+.||++ .+++|+|++++. +|.. .+++.+++.||+ +
T Consensus 249 ~~tf~--~~~~~~~~l~~~l~~l~~~l~~rL~~-------~~~~v~l~~~~~---~~~~----~~~~~~l~~pt~----~ 308 (354)
T 3bq0_A 249 YLTLP--YNTRDVKVILPYLKKAINEAYNKVNG-------IPMRITVIAIME---DLDI----LSKGKKFKHGIS----I 308 (354)
T ss_dssp EEEEE--EEECCHHHHHHHHHHHHHHHHTTTSS-------EEEEEEEEEEET---TSCE----EEEEEECSSCCC----H
T ss_pred eEeCC--CCCCCHHHHHHHHHHHHHHHHHHHHh-------hCCEEEEEEEeC---CCCc----ceEEEECCCccC----C
Confidence 99998 78999999999999999999999972 899999999984 3433 578899999984 7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCc-c-eeEEEEEecCCeecCCCccccccccc
Q 007746 265 TFNLFQAGLREFLGSFGVKTQGSHYSGW-R-ITALSVSASKIVPVLSGTCSIMKYFN 319 (591)
Q Consensus 265 a~~L~~aal~ll~~~~~~~~~~~~~~g~-~-iR~lGVsls~L~~~~~g~~sq~~LF~ 319 (591)
+..|++ +..+|.+.+ ..+. + ||++||++++|.+. ...|.+||+
T Consensus 309 ~~~i~~-~~~ll~~~~--------~~~~~~~vr~lgv~~~~l~~~---~~~q~~LF~ 353 (354)
T 3bq0_A 309 DNAYKV-AEDLLRELL--------VRDKRRNVRRIGVKLDNIIIN---KTNLSDFFD 353 (354)
T ss_dssp HHHHHH-HHHHHHHHT--------TSCSSCCEEEEEEEEEEEECC------------
T ss_pred HHHHHH-HHHHHHHHh--------ccCCCCceEEEEEEEecCCCC---Ccccccccc
Confidence 788999 888888764 2345 8 99999999999876 246788985
No 4
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=1e-47 Score=406.83 Aligned_cols=260 Identities=20% Similarity=0.313 Sum_probs=228.5
Q ss_pred ccCCCCCCccchhhhhhcCCCCchhh-hcchHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccc
Q 007746 26 ESKDGNDSKATVKEWLCRCDADHRDK-LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104 (591)
Q Consensus 26 ~~~~~~~~~ySIDE~fl~lDvt~~~~-l~~~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~ 104 (591)
..+++..++|||||+|+ |+|++.+ +|+++..+|++||++|+++||||||||||+||+|||||++++||+|+++++++
T Consensus 93 ~~~tp~ve~~SiDEa~L--Dvt~~~~~~~~~~~~~a~~ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~ 170 (362)
T 4f4y_A 93 NKHADKIEVASIDEAYL--DVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT 170 (362)
T ss_dssp HTTCSEEEEEETTEEEE--ECTTTTTTCHHHHHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHHTSCSSCEEECCTT
T ss_pred HHhCCCEEEecCceEEE--ecCCccccccCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhcccCCCEEEECHH
Confidence 46888899999999998 9999888 89999999999999999999999999999999999999999999999999999
Q ss_pred cHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccccCCccccc
Q 007746 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 184 (591)
Q Consensus 105 ~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~ 184 (591)
++.+||+++||++|||||++++++|+ .+||+|++||++++...|+++||.+.|.+||++|+|+|+++|.+..+ |||+.
T Consensus 171 ~~~~~L~~lpv~~l~GiG~~~~~~L~-~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~ 248 (362)
T 4f4y_A 171 EVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGR 248 (362)
T ss_dssp THHHHHHTCBSTTSTTCCSTTHHHHH-HTTCCBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEE
T ss_pred HHHHHHHhCChhhccCCCHHHHHHHH-HcCCChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEE
Confidence 99999999999999999999999996 99999999999999999999999448999999999999999998877 99999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcchhhHHH
Q 007746 185 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQED 264 (591)
Q Consensus 185 e~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T~~i~~d 264 (591)
+++|+ .++.+.+++..+|..|+++|+.||++ .+++|+|++++. +|.. .+++.+++.| + +
T Consensus 249 ~~tf~--~~~~~~~~l~~~l~~l~~~l~~rLr~-------~~~~v~l~i~~~---~~~~----~t~s~~l~~p-~----d 307 (362)
T 4f4y_A 249 YLTLP--YNTRDVKVILPYLKKAINEAYNKVNG-------IPMRITVIAIME---DLDI----LSKGKKFKHG-I----S 307 (362)
T ss_dssp EEEEE--EEECCHHHHHHHHHHHHHHHHHHCSS-------EEEEEEEEEEET---TSCE----EEEEEECSSC-C----C
T ss_pred EEecC--CCCCCHHHHHHHHHHHHHHHHHHHHh-------CCCEEEEEEEEC---CCcE----EEEEEECCCC-C----C
Confidence 99999 78999999999999999999999982 899999999984 4443 4788888877 5 6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCcc-eeEEEEEecCCeecCCCcccccccccC
Q 007746 265 TFNLFQAGLREFLGSFGVKTQGSHYSGWR-ITALSVSASKIVPVLSGTCSIMKYFNG 320 (591)
Q Consensus 265 a~~L~~aal~ll~~~~~~~~~~~~~~g~~-iR~lGVsls~L~~~~~g~~sq~~LF~~ 320 (591)
+..|++++.++|.+++. ..+.+ ||++||++++|.+. ...|.++|+.
T Consensus 308 ~~~i~~~a~~ll~~~~~-------~~~~~~vr~lGV~~~~L~~~---~~~q~~~~~~ 354 (362)
T 4f4y_A 308 IDNAYKVAEDLLRELLV-------RDKRRNVRRIGVKLDNIIIN---KTNLSDFFDI 354 (362)
T ss_dssp HHHHHHHHHHHHHHHTT-------SSCSCCEEEEEEEEEEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHh-------hcCCccEEEEEEEEeccccC---Cccccccccc
Confidence 67899999999887651 14678 99999999999876 3568888874
No 5
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=5.4e-47 Score=408.67 Aligned_cols=262 Identities=24% Similarity=0.322 Sum_probs=227.3
Q ss_pred cCCCCCCccchhhhhhcCCCCchhh-------------------hcch---------------HHHHHHHHHHHHHHHhC
Q 007746 27 SKDGNDSKATVKEWLCRCDADHRDK-------------------LLAC---------------GVLIVTELRMQVLKETE 72 (591)
Q Consensus 27 ~~~~~~~~ySIDE~fl~lDvt~~~~-------------------l~~~---------------~~~lA~~IR~~I~~etG 72 (591)
.+.+..++|||||+|+ |+|++.+ +|+. +..+|++||++|+++||
T Consensus 115 ~~tp~ve~~SiDE~fL--Dvt~~~~~~l~~~~~~~~~~~~~~g~l~g~~~~~~~~~~~~~l~~~~~la~~Ir~~I~~~~G 192 (420)
T 3osn_A 115 EFSPVVERLGFDENFV--DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLG 192 (420)
T ss_dssp HHCSCEEEETTTEEEE--ECHHHHHHHHHHSCSSSGGGCCCCSEEGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCeEEecCCEEEE--ECcccchhhccccccccccccccccccccccccccccchhhcchHHHHHHHHHHHHHHHHHC
Confidence 5678889999999998 9998753 4543 57999999999999999
Q ss_pred CeEEEEecCCHHHHHHhccCCCCCCEEEeccccHHhhcccCC-CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHH
Q 007746 73 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 151 (591)
Q Consensus 73 Lt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~v~~fL~~LP-I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k 151 (591)
||||||||+||+|||||++++||+|++++.++++.+||+++| |++|||||++++++|+ .+||+|+|||+.++...|++
T Consensus 193 lt~svGIa~nk~LAKlAs~~~KP~g~~vl~~~~~~~~L~~Lppv~~l~GIG~~t~~~L~-~lGI~TigdLa~~~~~~L~~ 271 (420)
T 3osn_A 193 LTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEK 271 (420)
T ss_dssp CCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHHHHHCSSGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHH
T ss_pred CcEEEEEeCCHHHHHHhhhhcCCCCeEEecHHHHHHhhccCccHHHccCCCHHHHHHHH-HhCCCcHHHHhhCCHHHHHH
Confidence 999999999999999999999999999999999999999997 9999999999999996 99999999999999999999
Q ss_pred HhCcchHHHHHHHHcCCCCCccccccCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEE
Q 007746 152 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 231 (591)
Q Consensus 152 ~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~e~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLtL 231 (591)
+||+..|.+||++|+|+|+++|.+..++|||+.+++|+ ++.+.+++..+|..|+++|+.||++ .++.+++|+|
T Consensus 272 ~fG~~~g~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf~---~~~~~~~~~~~l~~La~~l~~rLr~----~~~~~~tv~l 344 (420)
T 3osn_A 272 ELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFK---KCSSEVEAKNKIEELLASLLNRVCQ----DGRKPHTVRL 344 (420)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCCCCSCSEEEEEEECS---SCCCSSSHHHHHHHHHHHHHHHHHH----HCSCEEEEEE
T ss_pred HhCchHHHHHHHHhcCCCccccCCCCCCCceeeeeeCC---CCCCHHHHHHHHHHHHHHHHHHHHH----cCCcccEEEE
Confidence 99986799999999999999999888899999999997 3788899999999999999999998 6899999999
Q ss_pred EEeecc-cCCCCCCCCcCceeeeCCCcch-h----hHHHHHHHHHHHHHHHhhhccccccCCCCCCcceeEEEEEecCCe
Q 007746 232 HASAFK-SSDSDSRKKFPSKSCPLRYGTA-K----IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 305 (591)
Q Consensus 232 ~ir~~~-~~~f~s~~~~~SrS~~L~~~T~-~----i~~da~~L~~aal~ll~~~~~~~~~~~~~~g~~iR~lGVsls~L~ 305 (591)
+++++. ...| ...+++++++.++. . -++.+.+|+++++++|.+++. ...+++||+|||++++|.
T Consensus 345 ~ir~~~~~~~~----~~~sr~~~l~~~~~~~l~~~~t~~~~~i~~~a~~Lf~~~~~------~~~~~~iRllgv~~~~l~ 414 (420)
T 3osn_A 345 IIRRYSSEKHY----GRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVN------VKMPFHLTLLSVCFCNLK 414 (420)
T ss_dssp EEEEECSSCCC----CCEEEEEECCTTTCCC-----CTTHHHHHHHHHHHHHHHSC------SSSCCEEEEEEEEEEEEC
T ss_pred EEEeCCCCCCC----ceeEEEEECCCccccccccCCCchHHHHHHHHHHHHHHhhc------ccCCcceeEEEEEEeCcc
Confidence 999641 1122 23589999987621 0 124677899999999998763 123456999999999998
Q ss_pred ecC
Q 007746 306 PVL 308 (591)
Q Consensus 306 ~~~ 308 (591)
+.+
T Consensus 415 ~~~ 417 (420)
T 3osn_A 415 ALN 417 (420)
T ss_dssp ---
T ss_pred cCc
Confidence 764
No 6
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.3e-47 Score=404.14 Aligned_cols=251 Identities=22% Similarity=0.255 Sum_probs=137.3
Q ss_pred ccCCCCCCccchhhhhhcCCCCchhhhcchHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEecccc
Q 007746 26 ESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 105 (591)
Q Consensus 26 ~~~~~~~~~ySIDE~fl~lDvt~~~~l~~~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~ 105 (591)
..+.+..++|||||+|+ |+++.. ++.+..+|++||++|+++||||||||||+||+|||||++++||+|++++++++
T Consensus 95 ~~~~p~ve~~SiDEafl--d~t~~~--~~~~~~~a~~ir~~i~~~~gl~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~~ 170 (356)
T 4dez_A 95 RDLGHPLEVWGWDEAYL--GADLPD--ESDPVEVAERIRTVVAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEAN 170 (356)
T ss_dssp HTTSSCEEEETTTEEEE--EEECCT--TCCHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCTTT
T ss_pred hhcCCceeecCcchhhe--eccccc--CCCHHHHHHHHHHHHHHHhCCccccchhccHHHHHHHHHHhhhcCcccccchh
Confidence 46888899999999998 777654 46788999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccc-cCCccccc
Q 007746 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGS 184 (591)
Q Consensus 106 v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~-~~~KSIs~ 184 (591)
+.+||+++||++|||||++++++|+ .+||+|++||++++...|+++||.+.|.+||++|+|+|+++|.+. ..+|||++
T Consensus 171 ~~~~L~~lpv~~l~GiG~~~~~~L~-~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~ 249 (356)
T 4dez_A 171 WMTVMGDRPPDALWGVGPKTTKKLA-AMGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSH 249 (356)
T ss_dssp HHHHHTTSCGGGSTTCCHHHHHHHH-HTTCCSHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCC----------
T ss_pred hhhhhhcCcHHHHcCCchhHHHHHH-HcCCCeecccccCCHHHHHHHhCChHHHHHHHHHcCCCcccccccccccccccc
Confidence 9999999999999999999999996 999999999999999999999997689999999999999999875 46899999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcchhhHHH
Q 007746 185 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQED 264 (591)
Q Consensus 185 e~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T~~i~~d 264 (591)
++||+ .++.+.+++..+|..|+++++.||++ +++.+++|+|++++. +|.+ .+++.+|+.||+ +
T Consensus 250 ~~tf~--~~~~~~~~l~~~l~~la~~~~~rLr~----~~~~~~~l~v~ir~~---~f~~----~t~~~~l~~pt~----d 312 (356)
T 4dez_A 250 VVTFP--QDLTERREMDSAVRDLALQTLAEIVE----QGRIVTRVAVTVRTS---TFYT----RTKIRKLPAPST----D 312 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCC--CcCCCHHHHHHHHHHHHHHHHHHHHH----cCCceeEEEEEEEeC---CCeE----EEEEEECCcccC----C
Confidence 99999 78999999999999999999999997 689999999999974 4533 578889999994 7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCcceeEEEEEecCCeec
Q 007746 265 TFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 307 (591)
Q Consensus 265 a~~L~~aal~ll~~~~~~~~~~~~~~g~~iR~lGVsls~L~~~ 307 (591)
+..|+++|+.+|.+.+ .+.+||+|||++++|.+.
T Consensus 313 ~~~i~~~a~~ll~~~~---------~~~~vRliGV~ls~l~d~ 346 (356)
T 4dez_A 313 AGQIVDTALAVLDQFE---------LDRPVRLLGVRLELAMDD 346 (356)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHhcc---------CCCCEEEEEEEECCCCCC
Confidence 8889999998887543 467899999999999764
No 7
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=3.1e-45 Score=404.05 Aligned_cols=234 Identities=21% Similarity=0.300 Sum_probs=207.9
Q ss_pred hhcc-hHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccc--cHHhhcccCCCCcccCCcHHHHH
Q 007746 51 KLLA-CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIKKMKQLGGKLGT 127 (591)
Q Consensus 51 ~l~~-~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~--~v~~fL~~LPI~kL~GIG~k~~~ 127 (591)
++|+ .+..+|++||++|+++||||||||||+||+||||||+++||+||++|.++ ++.+||+++||++|||||+++++
T Consensus 273 ~lfg~~~~~ia~~IR~~I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~ 352 (517)
T 3pzp_A 273 VVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEK 352 (517)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHH
Confidence 4566 47899999999999999999999999999999999999999999999875 68999999999999999999999
Q ss_pred HHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccccCCcccccccccCCCCCCCCHHHHHHHHHHH
Q 007746 128 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 207 (591)
Q Consensus 128 kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~e~tF~~~~~i~~~eel~~~L~~L 207 (591)
+|. .+||+||+||++++ ..|+++||+..+.++|+.|+|+|+++|.+..++|||+.++||+ . +.+.+++..+|..|
T Consensus 353 ~L~-~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~--~-~~~~e~l~~~l~~L 427 (517)
T 3pzp_A 353 MLK-ALGIITCTELYQQR-ALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFS--E-INKAEEQYSLCQEL 427 (517)
T ss_dssp HHH-HTTCCBHHHHHHHH-HHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEE--E-ECCHHHHHHHHHHH
T ss_pred HHH-HhCCCcHHHHHhhH-HHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccceeEEEcc--c-ccCHHHHHHHHHHH
Confidence 996 99999999999984 7899999986678899999999999999888999999999998 4 88999999999999
Q ss_pred HHHHHHHHHHHHhhcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcchhhHHHHHHHHHHHHHHHhhhccccccCC
Q 007746 208 CEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 287 (591)
Q Consensus 208 aeeLa~RLr~~l~~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T~~i~~da~~L~~aal~ll~~~~~~~~~~~ 287 (591)
+++|+.||++ +++.+++|+|++++. +|.. .+++++++.+|+ ++.+|++.|.++|...+...
T Consensus 428 a~~l~~rLr~----~~~~~~~vtlklk~~---~f~~----~tr~~tl~~~t~----~~~~i~~~a~~Ll~~~~~~~---- 488 (517)
T 3pzp_A 428 CSELAQDLQK----ERLKGRTVTIKLKNV---NFEV----KTRASTVSSVVS----TAEEIFAIAKELLKTEIDAD---- 488 (517)
T ss_dssp HHHHHHHHHT----TTCCBSCEEEEEEET---TSCE----EEECCCCSSCBC----SHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHH----cCCceeEEEEEEEec---CCce----eeEEEeCCCCCC----CHHHHHHHHHHHHHHHhhhc----
Confidence 9999999997 799999999999984 4443 588999999984 77889999999887764200
Q ss_pred CCCCcceeEEEEEecCCeecC
Q 007746 288 HYSGWRITALSVSASKIVPVL 308 (591)
Q Consensus 288 ~~~g~~iR~lGVsls~L~~~~ 308 (591)
...+.+||++||++++|.+..
T Consensus 489 ~~~~~~iRllGV~~s~l~~~~ 509 (517)
T 3pzp_A 489 FPHPLRLRLMGVRISSFPNEE 509 (517)
T ss_dssp TTSCCCEEEEEEEECCCCCCC
T ss_pred cCCCCcEEEEEEEecCCcChh
Confidence 013567999999999998764
No 8
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=3.3e-45 Score=396.30 Aligned_cols=237 Identities=39% Similarity=0.627 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccccHHhhcccCCCCcccCCcHHHHHH-HHHhcCC
Q 007746 57 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS-LQNELGV 135 (591)
Q Consensus 57 ~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~v~~fL~~LPI~kL~GIG~k~~~k-L~~~lGI 135 (591)
..+|++||++|+++||||||||||+||+|||||++++||+|+++++++++.+||+++||++|||||++++++ |+ .+||
T Consensus 197 ~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~~~~~~~L~~lpv~~l~GiG~~~~~~lL~-~lGI 275 (435)
T 4ecq_A 197 AVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIE-ILGI 275 (435)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEECCGGGHHHHHHTCBGGGSTTCSSHHHHHHHH-HHTC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEEEehhHHHHHHhhCCHHHhcCCCHHHHHHHHH-HcCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999877 65 9999
Q ss_pred CcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccccCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 007746 136 TTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 215 (591)
Q Consensus 136 ~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~e~tF~~~~~i~~~eel~~~L~~LaeeLa~RL 215 (591)
+|+|||++++...|+++||.+.|.+||+.|+|+|+++|.+..++|||+++++|+.+.++.+.+++..+|..|+++|+.||
T Consensus 276 ~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rL 355 (435)
T 4ecq_A 276 EYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL 355 (435)
T ss_dssp CBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995589999999999999999988889999999999932148999999999999999999999
Q ss_pred HHHHhhcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcchhhHHHHHHHHHHHHHHHhhhccccccCCCCCCccee
Q 007746 216 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 295 (591)
Q Consensus 216 r~~l~~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T~~i~~da~~L~~aal~ll~~~~~~~~~~~~~~g~~iR 295 (591)
+++..++++.|++|+|++++.....+ ...+|+++|+.+ ++..|++.|+.+|.+.+....+ ..-..+||
T Consensus 356 r~~~~~~~~~~~~l~v~ir~~~~~~~----~~~~R~~~l~~~------~~~~i~~~a~~L~~~~~~~~~~--~~~~~pir 423 (435)
T 4ecq_A 356 TKDRNDNDRVATQLVVSIRVQGDKRL----SSLRRCCALTRY------DAHKMSHDAFTVIKNCNTSGIQ--TEWSPPLT 423 (435)
T ss_dssp HHHHHHHSEEEEEEEEEEEETTCCSS----CSEEEEEECCSC------CHHHHHHHHHHHHGGGCCCSST--TEEEEEEE
T ss_pred HhhhhhcCceEEEEEEEEEeCCCCCC----ceeEEeccCCCC------CHHHHHHHHHHHHHHHhhcccc--ccCCCCee
Confidence 98544458999999999998533222 236899999864 3457888888888876632111 01135799
Q ss_pred EEEEEecCCee
Q 007746 296 ALSVSASKIVP 306 (591)
Q Consensus 296 ~lGVsls~L~~ 306 (591)
.|||++++|++
T Consensus 424 ~lgvs~s~f~~ 434 (435)
T 4ecq_A 424 MLFLCATKFSA 434 (435)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEeeccc
Confidence 99999999976
No 9
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=7.1e-45 Score=393.43 Aligned_cols=257 Identities=19% Similarity=0.178 Sum_probs=223.0
Q ss_pred CCCCCccchhhhhhcCC--CCchhhh-cchHHHHHHHHHHHHHHHh-CCeEEEEecCCHHHHHHhccCCCCCCEEEeccc
Q 007746 29 DGNDSKATVKEWLCRCD--ADHRDKL-LACGVLIVTELRMQVLKET-EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104 (591)
Q Consensus 29 ~~~~~~ySIDE~fl~lD--vt~~~~l-~~~~~~lA~~IR~~I~~et-GLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~ 104 (591)
.+..++|||||+|+ | +|++.++ ++.+..+|++||++|+++| |||||||||+||+|||||++++||+|+++++++
T Consensus 154 t~~ve~~SiDEafl--D~~vt~~~~~~~~~~~~la~~Ir~~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l~~~ 231 (434)
T 2aq4_A 154 FNLILPISIDEAVC--VRIIPDNIHNTNTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKS 231 (434)
T ss_dssp CSEEEEEETTEEEE--EEEECC------CHHHHHHHHHHHHHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECCCGG
T ss_pred CCCEEEEcCceeEE--cCcCccchhhcCCCHHHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEECCh
Confidence 56788999999998 7 9998776 5789999999999999999 899999999999999999999999999999998
Q ss_pred cH-HhhcccCCCCcccCCcHHHHHHHHHh--cCCCcHHHHhhc-CHHHHHHHhCcchHHHHHHHHcCCCCCccc-----c
Q 007746 105 SV-KGLLDSLPIKKMKQLGGKLGTSLQNE--LGVTTVGDLLKF-SEDKLQESYGFNTGTWLWNIARGISGEEVQ-----A 175 (591)
Q Consensus 105 ~v-~~fL~~LPI~kL~GIG~k~~~kL~~~--lGI~TigDLa~~-~~~~L~k~FG~~~G~~L~~~arGid~~~V~-----~ 175 (591)
++ .+||+++||++|||||++++++|+ . +||+|++||+++ +...|+++||.+.|.++|++|+|+|+++|. +
T Consensus 232 ~~~~~~l~~lpv~~l~GiG~~~~~~L~-~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ 310 (434)
T 2aq4_A 232 NLSEEFWSSFKLDDLPGVGHSTLSRLE-STFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDP 310 (434)
T ss_dssp GCCHHHHTTCCGGGSTTCCHHHHHHHH-HHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHHHCH
T ss_pred hhHHHHhhcCCcccccCcCHHHHHHHH-HhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccccCc
Confidence 87 799999999999999999999996 8 899999999999 999999999965899999999999999986 3
Q ss_pred c--cCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeecc-cCCCCCCC-------
Q 007746 176 R--LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK-SSDSDSRK------- 245 (591)
Q Consensus 176 ~--~~~KSIs~e~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLtL~ir~~~-~~~f~s~~------- 245 (591)
. .++|||+.+++|+ .++.+.+++..+|..|+++|+.||++ +++.+++|+|++++.. ++++...+
T Consensus 311 ~~~~~~ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rLr~----~~~~~~~v~l~l~~r~~~~~~~~~ky~g~gd~ 384 (434)
T 2aq4_A 311 KEVLQRKSLSIDINWG--IRFKNITQVDLFIERGCQYLLEKLNE----INKTTSQITLKLMRRCKDAPIEPPKYMGMGRC 384 (434)
T ss_dssp HHHHSCCCEEEEECSS--CCCSSHHHHHHHHHHHHHHHHHHHHH----TTEEEEEEEEEEEEECTTSCSSCSSTTCCCSE
T ss_pred ccCCCCceeEEEEECC--CCCCCHHHHHHHHHHHHHHHHHHHHH----cCCcceEEEEEEEEecCCCCcccccccCCCCc
Confidence 2 4789999999998 78999999999999999999999997 7999999999998532 12221111
Q ss_pred CcCceeeeCCCcchhhHHHHHHHHHHHHHHHhhhccccccCCCCCCcceeEEEEEecCCee
Q 007746 246 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 306 (591)
Q Consensus 246 ~~~SrS~~L~~~T~~i~~da~~L~~aal~ll~~~~~~~~~~~~~~g~~iR~lGVsls~L~~ 306 (591)
...+++++++.||+ ++..|++++..+|...+ ..+.+||+|||++++|.+
T Consensus 385 ~~~s~s~~l~~pt~----~~~~i~~~a~~ll~~~~--------~~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 385 DSFSRSSRLGIPTN----EFGIIATEMKSLYRTLG--------CPPMELRGLALQFNKLVD 433 (434)
T ss_dssp EEEEEEEEEEEEEC----CHHHHHHHHHHHHHHHT--------CCGGGEEEEEEEEEEEEE
T ss_pred ccceEEeecCCCcC----CHHHHHHHHHHHHHHhc--------CCCCCEEEEEEEEeCccc
Confidence 13578889998884 77889999999888753 246799999999999875
No 10
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=8.7e-45 Score=400.57 Aligned_cols=237 Identities=24% Similarity=0.352 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccccHHhhccc--CCCCcccCCcHHHHHHHHHh
Q 007746 55 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS--LPIKKMKQLGGKLGTSLQNE 132 (591)
Q Consensus 55 ~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~v~~fL~~--LPI~kL~GIG~k~~~kL~~~ 132 (591)
.+..+|++||++|+++||||||||||+||+||||||+++||+|+++|+++++.+||++ +||++|||||++++++|. .
T Consensus 247 ~~~~ia~~IR~~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~~~~~fL~~~~lPV~~l~GIG~~t~~~L~-~ 325 (520)
T 3mfi_A 247 LGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELI-D 325 (520)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGGGHHHHHTSSSCCGGGSTTCSSHHHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChHHHHHHhhccCCcHHHhcCCCHHHHHHHH-H
Confidence 3789999999999999999999999999999999999999999999999999999998 999999999999999997 7
Q ss_pred c-CC---CcH-----------HHHhhcCHHHHHHHhCc------------chHHHHHHHHcCCCCCccccccCCcccccc
Q 007746 133 L-GV---TTV-----------GDLLKFSEDKLQESYGF------------NTGTWLWNIARGISGEEVQARLLPKSHGSG 185 (591)
Q Consensus 133 l-GI---~Ti-----------gDLa~~~~~~L~k~FG~------------~~G~~L~~~arGid~~~V~~~~~~KSIs~e 185 (591)
+ || +|+ +||+.++...|+++||. ..|.+||++|+|+|+++|.+..++|||+++
T Consensus 326 llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~arGid~~~V~~~~~~KSi~~~ 405 (520)
T 3mfi_A 326 VLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSN 405 (520)
T ss_dssp HTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTTTCCCCCCCCCCSCSCEEEE
T ss_pred hcCCCcccchhhhhhccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhCCCCCCCCCCCCCCCceeeE
Confidence 7 99 665 88888888999999994 489999999999999999998899999999
Q ss_pred cccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh--hcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcc--hh
Q 007746 186 KSFPGPR-ALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGT--AK 260 (591)
Q Consensus 186 ~tF~~~~-~i~~~eel~~~L~~LaeeLa~RLr~~l~--~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T--~~ 260 (591)
++|+ . ++.+.+++..+|..|+++|+.||++... .+++.|++|+|++++. +|.+ .+++.+|+.|| +
T Consensus 406 ~tf~--~~~i~~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~---df~~----~trs~~l~~pt~~~- 475 (520)
T 3mfi_A 406 KNLR--GKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTK---SYEV----YRKSGPVAYKGINF- 475 (520)
T ss_dssp EECC--TTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECT---TCCE----EEEEEECCCCCGGG-
T ss_pred EEcC--CCCcCCHHHHHHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeC---CCCc----ceEEEECCCCCccC-
Confidence 9998 5 4899999999999999999999997411 1258999999999984 4543 58899999988 4
Q ss_pred hHHHHHHHHHHHHHHHhhhccccccCCCCCCcceeEEEEEecCCeecC
Q 007746 261 IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 308 (591)
Q Consensus 261 i~~da~~L~~aal~ll~~~~~~~~~~~~~~g~~iR~lGVsls~L~~~~ 308 (591)
++.+|+++|.++|..++.. .+...+.+||+|||++++|....
T Consensus 476 ---~~~~I~~~a~~Ll~~~~~~---~~~~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 476 ---QSHELLKVGIKFVTDLDIK---GKNKSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH---TTTSSCSSCSEEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHHHHHhhh---cccccCCceeEEEEEEeCCEecC
Confidence 6778999999998877621 00112589999999999998753
No 11
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=1.9e-45 Score=400.39 Aligned_cols=230 Identities=21% Similarity=0.300 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEecc--ccHHhhcccCCCCcccCCcHHHHHHHHHh
Q 007746 55 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGKLGTSLQNE 132 (591)
Q Consensus 55 ~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~--~~v~~fL~~LPI~kL~GIG~k~~~kL~~~ 132 (591)
.+..+|++||++|+++||||||||||+||+|||||++++|||||++|.+ +++.+||+++||++|||||++++++|. .
T Consensus 222 ~~~~la~~IR~~I~~~~Glt~S~GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L~-~ 300 (459)
T 1t94_A 222 SAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLK-A 300 (459)
T ss_dssp SHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHhCCeEEEeecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHHH-H
Confidence 5899999999999999999999999999999999999999999999988 479999999999999999999999996 9
Q ss_pred cCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCCCCccccccCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHH
Q 007746 133 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 212 (591)
Q Consensus 133 lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid~~~V~~~~~~KSIs~e~tF~~~~~i~~~eel~~~L~~LaeeLa 212 (591)
+||+|++||++++ ..|+++||...|.+||+.|+|+|+++|.+..++|||+++++|+ . +.+.+++..+|..|+++|+
T Consensus 301 lGI~T~gdL~~~~-~~L~~~fG~~~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~--~-~~~~~~l~~~l~~L~~~l~ 376 (459)
T 1t94_A 301 LGIITCTELYQQR-ALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFS--E-INKAEEQYSLCQELCSELA 376 (459)
T ss_dssp TTCCBHHHHHHTH-HHHHHHSCHHHHHHHHHHHTTCCCSCC---C--CCEEEEEEEE--E-ECCHHHHHHHHHHHHSSTT
T ss_pred cCCCcHHHHHhhH-HHHHHHhChHhHHHHHHHHcCCCCcccCCCCCCcceeeeeecC--C-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999985 7899999986799999999999999999888899999999998 5 8999999999999999999
Q ss_pred HHHHHHHhhcCceeeEEEEEEeecccCCCCCCCCcCceeeeCCCcchhhHHHHHHHHHHHHHHHhhhccccccCCCCCCc
Q 007746 213 ERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW 292 (591)
Q Consensus 213 ~RLr~~l~~~~~~a~tLtL~ir~~~~~~f~s~~~~~SrS~~L~~~T~~i~~da~~L~~aal~ll~~~~~~~~~~~~~~g~ 292 (591)
.||++ +++.+++|+|++++. +|.. .+++++++.+|+ ++..|++.+.++|.+.+.. ....++
T Consensus 377 ~rL~~----~~~~~~~vtl~l~~~---~~~~----~srs~~l~~~t~----~~~~i~~~a~~ll~~~~~~----~~~~~~ 437 (459)
T 1t94_A 377 QDLQK----ERLKGRTVTIKLKNV---NFEV----KTRASTVSSVVS----TAEEIFAIAKELLKTEIDA----DFPHPL 437 (459)
T ss_dssp CCCC-------CCCSCEEEEEEET---TCCE----EEECC-CCCCCC----C--CHHHHHHHHHHHHHSS----STTSCC
T ss_pred HHHHH----hCCCcceEEEEEEEC---CCce----eeEEEECCCccC----CHHHHHHHHHHHHHHHHhh----ccCCCC
Confidence 99987 689999999999984 3433 478899998884 6677888888888876520 011366
Q ss_pred ceeEEEEEecCCeecC
Q 007746 293 RITALSVSASKIVPVL 308 (591)
Q Consensus 293 ~iR~lGVsls~L~~~~ 308 (591)
+||++||++++|.+..
T Consensus 438 ~ir~lGv~~~~l~~~~ 453 (459)
T 1t94_A 438 RLRLMGVRISSFPNEE 453 (459)
T ss_dssp CEEEEEEEECC-----
T ss_pred cEEEEEEEEccCcCcc
Confidence 8999999999998764
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=99.95 E-value=2.7e-29 Score=249.31 Aligned_cols=123 Identities=23% Similarity=0.420 Sum_probs=108.4
Q ss_pred ccCCCCCCccchhhhhhcCCCCchhh-hcchHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccc
Q 007746 26 ESKDGNDSKATVKEWLCRCDADHRDK-LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 104 (591)
Q Consensus 26 ~~~~~~~~~ySIDE~fl~lDvt~~~~-l~~~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~ 104 (591)
..+.+..+.|||||+|+ |+|++.+ +|+++..+|++||++|+++||||||||||+||+|||||++++||+|+++++++
T Consensus 98 ~~~tp~ve~~siDE~~l--Dvt~~~~~l~~~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~ 175 (221)
T 1im4_A 98 NKHADKIEVASIDEAYL--DVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT 175 (221)
T ss_dssp HTTCSEEEEEETTEEEE--ECTTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGG
T ss_pred HHhCCceEEecCCeEEE--EecchhhhccCCHHHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHH
Confidence 36788899999999998 9999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHH
Q 007746 105 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 151 (591)
Q Consensus 105 ~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k 151 (591)
++.+||+++||++|||||++++++|+ .+||+|++||+++|...|++
T Consensus 176 ~~~~~L~~lpv~~l~giG~~~~~~L~-~~Gi~TigdL~~~~~~~L~~ 221 (221)
T 1im4_A 176 EVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEK 221 (221)
T ss_dssp GHHHHHHTCBGGGSTTCCHHHHHHHH-HTTCCBTTC-----------
T ss_pred HHHHHHHhCCcccccCCCHHHHHHHH-HcCCCcHHHHHCCCHHHhhC
Confidence 99999999999999999999999996 99999999999999888763
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.20 E-value=2.5e-11 Score=107.96 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=83.2
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEE---EEEeecccCCCCCCCCcCceeeeCCC
Q 007746 180 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT---LHASAFKSSDSDSRKKFPSKSCPLRY 256 (591)
Q Consensus 180 KSIs~e~tF~~~~~i~~~eel~~~L~~LaeeLa~RLr~~l~~~~~~a~tLt---L~ir~~~~~~f~s~~~~~SrS~~L~~ 256 (591)
.-+|.++||+ .++.+.+++..+|..||++++.||++ .+ .+++|+ |+|+|. +|.+ .+++.+ .
T Consensus 5 ~~~g~e~Tf~--~d~~~~~~l~~~l~~l~~~v~~rLr~----~~-~~~tV~k~~vkir~~---dF~~----~trs~t--~ 68 (115)
T 1unn_C 5 HHVGVERTMA--EDIHHWSECEAIIERLYPELERRLAK----VK-PDLLIARQGVKLKFD---DFQQ----TTQEHV--W 68 (115)
T ss_dssp CEEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHHHH----HC-TTCBCSEEEEEEEET---TSCE----EEEEEE--C
T ss_pred CCCccceECC--CCCCCHHHHHHHHHHHHHHHHHHHHh----hC-CCCeEEEeEEEEEEC---CCCe----EEeccc--c
Confidence 3579999999 79999999999999999999999997 57 999999 999984 5544 466666 5
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccccccCCCCCCcceeEEEEEecCCeec
Q 007746 257 GTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 307 (591)
Q Consensus 257 ~T~~i~~da~~L~~aal~ll~~~~~~~~~~~~~~g~~iR~lGVsls~L~~~ 307 (591)
||+ ++.+|+++|.++|...+ .+.+||++||++++|.+.
T Consensus 69 pt~----~~~~i~~~a~~Ll~~~~---------~~~~vRllGV~ls~L~~~ 106 (115)
T 1unn_C 69 PRL----NKADLIATARKTWDERR---------GGRGVRLVGLHVTLLDPQ 106 (115)
T ss_dssp SBC----CHHHHHHHHHHHHHHHC---------TTCCEEEEEEEEECCCCC
T ss_pred CcC----CHHHHHHHHHHHHHhhh---------cCCCEEEEEEEEeCCCCC
Confidence 674 67789999998887653 478999999999999765
No 14
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=96.28 E-value=0.0026 Score=51.90 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=45.6
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhC--cchHHHHHHHHcC
Q 007746 114 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG--FNTGTWLWNIARG 167 (591)
Q Consensus 114 PI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG--~~~G~~L~~~arG 167 (591)
+|.+|+|||..++.+|. ..||+|+.||+.++...|....| ...+..|+..||.
T Consensus 8 ~l~~L~Gi~~~~~~kL~-e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLA-ARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSSTTCCHHHHHHHH-TTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 35577899999999996 99999999999999999999888 3457788888874
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.26 E-value=0.0068 Score=48.29 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=45.0
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcch-HHHHHHHHcC
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARG 167 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~-G~~L~~~arG 167 (591)
+.+|||||.+..++|.+. +.++.+|..++.+.|.+..|... |+.+|..++.
T Consensus 6 L~~IpGIG~kr~~~LL~~--Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHH--VKNIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHTSTTCCHHHHHHHHHH--CSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHHH--cCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 457899999999999644 45999999999999999999988 9999999874
No 16
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=95.57 E-value=0.0056 Score=45.77 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=18.8
Q ss_pred ccCCccccccCChHHHHHHHH
Q 007746 544 EEIDPSVIDELPKEIQDEIQA 564 (591)
Q Consensus 544 ~~id~~~~~el~~ei~~e~~~ 564 (591)
+.||+.|+.+||.+||.||-+
T Consensus 14 ~~VD~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 14 EGVDQEVFKQLPADIQEEILS 34 (48)
T ss_dssp TTCCGGGTTTSCHHHHHHHTT
T ss_pred CCCCHHHHHHCcHHHHHHHHh
Confidence 569999999999999999843
No 17
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=95.04 E-value=0.019 Score=48.46 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=45.2
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcch-HHHHHHHHcC
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARG 167 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~-G~~L~~~arG 167 (591)
+.+|||||.+..++|. -.+.++.+|..++.+.|.+.+|... |..+|..++.
T Consensus 20 L~~IpGIG~kr~~~LL--~~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLM--HHVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHTCSSCCHHHHHHHH--HHSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHTS
T ss_pred HHhCCCCCHHHHHHHH--HHcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHHh
Confidence 4578999999999996 4567999999999999999999988 9999999973
No 18
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.51 E-value=0.024 Score=48.78 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHH
Q 007746 114 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 149 (591)
Q Consensus 114 PI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L 149 (591)
.+++||+||+++++.|. ..||+|+.||.......+
T Consensus 5 ~L~~LPNiG~~~e~~L~-~vGI~s~e~L~~~Ga~~a 39 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHH
Confidence 57899999999999996 999999999998866543
No 19
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.19 E-value=0.04 Score=47.37 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHH
Q 007746 114 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 148 (591)
Q Consensus 114 PI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~ 148 (591)
.+++||+||.++++.|. ..||+|+.||..+....
T Consensus 5 ~L~dLPNig~~~e~~L~-~~GI~t~~~Lr~~Ga~~ 38 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKE 38 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHCHHH
T ss_pred HHhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHH
Confidence 47899999999999996 99999999999987654
No 20
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=92.50 E-value=0.062 Score=47.86 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=47.2
Q ss_pred cCCCCccc--CCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhC--cchHHHHHHHHcCC
Q 007746 112 SLPIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG--FNTGTWLWNIARGI 168 (591)
Q Consensus 112 ~LPI~kL~--GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG--~~~G~~L~~~arGi 168 (591)
++||.+|. |||....++|. ..|++|+.+|+..+...|...-| ...+..+...|+-.
T Consensus 22 ~~~I~~L~~~GIg~~~i~kL~-eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKKLE-EAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHHHH-TTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCCHHHHHHHH-HcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 35888888 99999999996 99999999999999999987755 34577888888754
No 21
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=92.08 E-value=0.17 Score=41.60 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=43.3
Q ss_pred ccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHH
Q 007746 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 165 (591)
Q Consensus 111 ~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~a 165 (591)
...||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+.-..+...+
T Consensus 7 l~~~Ie~L-~LS~Ra~NcLk-ragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L 61 (73)
T 1z3e_B 7 LEMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKL 61 (73)
T ss_dssp HTCBGGGS-CCBHHHHHHHH-HTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hcCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 34889998 79999999996 999999999999999998766 8876555554444
No 22
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.91 E-value=0.2 Score=42.08 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=42.7
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHcC
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIARG 167 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~arG 167 (591)
+..++|||.+++++|.+.+| ++.+|...+.+.|.+. +|.+.+..++..+..
T Consensus 34 L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 55789999999999986676 7899999999999888 787778888777653
No 23
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=91.78 E-value=0.11 Score=42.48 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=40.7
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHH
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 165 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~a 165 (591)
..+..++|||++++++|.+.+| ++.+|...+.+.|.+. +|.+.+..++...
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 3467899999999999986666 7999999999999887 6666666666544
No 24
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=91.72 E-value=0.18 Score=42.07 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=42.9
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHcC
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIARG 167 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~arG 167 (591)
+..++|||.+++++|.+.+| ++.+|...+.+.|.+. +|.+.+..++..+..
T Consensus 21 L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 56789999999999986665 7999999999999888 777778888877764
No 25
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=90.84 E-value=0.17 Score=42.22 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=43.1
Q ss_pred hhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHH
Q 007746 108 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWN 163 (591)
Q Consensus 108 ~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~ 163 (591)
.-+-..||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+....+..
T Consensus 11 ~~~l~~~Ie~L-~LS~Ra~NcLk-~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 11 EKVLEMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp CCGGGCBGGGS-CCBHHHHHHHH-HTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred HHHhcCcHHHh-CCCHHHHHHHH-HhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 34557899998 89999999996 999999999999999988655 77655444443
No 26
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=89.32 E-value=0.14 Score=44.28 Aligned_cols=29 Identities=41% Similarity=0.793 Sum_probs=21.6
Q ss_pred cCCccccccCChHHHHHH-HHhhCCCCCCC
Q 007746 545 EIDPSVIDELPKEIQDEI-QAWLRPSKRPH 573 (591)
Q Consensus 545 ~id~~~~~el~~ei~~e~-~~~~~~~~~~~ 573 (591)
+|||.|+.|||+|+|+|+ ..|=|..--++
T Consensus 67 ~VDP~VFyeLP~eVQ~ELla~Wr~~~~~~~ 96 (108)
T 2khu_A 67 DIDPQVFYELPEAVQKELLAEWKRTGSDFH 96 (108)
T ss_dssp TCCHHHHTTSCHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHccHHHHHHHHHHHHHhCCCCC
Confidence 899999999999999996 45866544433
No 27
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=89.13 E-value=0.073 Score=53.21 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 166 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~ar 166 (591)
..+.+|+|||++++.+|. ..||.++.+|...+...|.+. ||.+.++.++..+.
T Consensus 15 ~~L~~IpGIGpk~a~~Ll-~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLR-EAGFESVEDVRGADQSALADVSGIGNALAARIKADVG 69 (241)
T ss_dssp --------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 467789999999999997 569999999999999999888 77777777655443
No 28
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=88.88 E-value=0.53 Score=39.85 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=43.4
Q ss_pred ccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHc
Q 007746 111 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 166 (591)
Q Consensus 111 ~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~ar 166 (591)
-..||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+....+...+.
T Consensus 10 l~~~I~~L-~LSvRa~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 65 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLX-AEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLA 65 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHH
Confidence 35688888 79999999996 999999999999999888654 88766555555443
No 29
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.78 E-value=0.29 Score=55.11 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=46.4
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~ar 166 (591)
+|+..+||||+..+++|. ..||+|+.||+ ++++.|.+.+|.+.|..++..+.
T Consensus 657 ~~L~qlp~i~~~rar~L~-~~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~~~~ 708 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY-NNGIKELGDVV-MNPDKVKNLLGQKLGEKVVQEAA 708 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH-HTTCCSHHHHH-HCHHHHHHHHCHHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH-HcCCCCHHHHh-CCHHHHHHHhChhHHHHHHHHHH
Confidence 477789999999999996 99999999999 99999999998778888887554
No 30
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=87.49 E-value=0.53 Score=46.41 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=44.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCc-chHHHHHHH
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNI 164 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~-~~G~~L~~~ 164 (591)
.++..|+|||.+++++|.+.|| ++..|..++.+.|.+.+|. +.++.++..
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 4678899999999999987777 8999999999999999998 888888765
No 31
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=87.30 E-value=1.4 Score=36.88 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=39.2
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcc
Q 007746 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 156 (591)
Q Consensus 112 ~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~ 156 (591)
.+.++..||+-.-+.++|+ +-||+|+.|+...++.+|.+..|..
T Consensus 3 ~l~~~~~p~Lse~~~~~L~-~~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 3 VLRVGLCPGLTEEMIQLLR-SHRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp CCCTTSSTTCCHHHHHHHH-HTTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred ccccccCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHhCCC
Confidence 4556667999999999997 9999999999999999999999963
No 32
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.12 E-value=0.99 Score=46.84 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=44.2
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcc--hHHHHHHHHc
Q 007746 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 166 (591)
Q Consensus 112 ~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~--~G~~L~~~ar 166 (591)
..+|.+|+|||..+.++|+ ..||+|+.+++..+...|.+.-|.. .+..+...++
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~-~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLR-EAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cccHHHcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 3589999999999999996 9999999999999999999888852 2445555544
No 33
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=85.83 E-value=0.51 Score=40.14 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.3
Q ss_pred cccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 007746 110 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 143 (591)
Q Consensus 110 L~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~ 143 (591)
|..-+|.+|||||+.++++|. .-||.+..+|..
T Consensus 15 mgeK~V~evpGIG~~~~~~L~-~~Gf~kAy~lLG 47 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLE-ERGFDKAYVVLG 47 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHH-HcCccHHHHHHH
Confidence 334689999999999999996 999999887765
No 34
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=85.73 E-value=0.92 Score=46.66 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=51.7
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCc--chHHHHHHHHcCCCCCccc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGISGEEVQ 174 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~--~~G~~L~~~arGid~~~V~ 174 (591)
.|+..|||||+..+++|. ..||.|+.||.+++.+.+...+|. ..|..++..++....-.|.
T Consensus 157 ~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~ 219 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK-EINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELT 219 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE
T ss_pred CceeCCCCCCHHHHHHHH-hCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEE
Confidence 588999999999999996 999999999999999999988774 2577888888877665553
No 35
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.25 E-value=0.97 Score=45.73 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=43.6
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcc--hHHHHHHHHcC
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARG 167 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~--~G~~L~~~arG 167 (591)
.+|.+|+||+..++++|+ ..||+|+.||+..+...|.+.-|.. .+..+...|+-
T Consensus 3 ~~~~~l~gi~~~~~~kL~-~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLV-EAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp --CTTSTTCCHHHHHHHH-HHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 368889999999999997 9999999999999999998877753 35556666653
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=84.57 E-value=0.43 Score=53.72 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=48.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~ar 166 (591)
+|+..|||||+..+++|. ..||+|+.||+.++ ..|.+.+|.+.|..++..++
T Consensus 632 ~~L~qlp~v~~~~ar~l~-~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLY-NAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHH-TTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHH-HcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC
Confidence 467789999999999996 99999999999999 99999999888999999998
No 37
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=84.18 E-value=1.3 Score=45.68 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=49.8
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCc--chHHHHHHHHcCCCCCcc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGISGEEV 173 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~--~~G~~L~~~arGid~~~V 173 (591)
.|+..|||||...+++|. ..||.|+.||.+++.+.+...+|. ..+..++..++-...-.|
T Consensus 161 ~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v 222 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 222 (339)
T ss_dssp CGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEE
T ss_pred CceecCCCCCHHHHHHHH-hcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEE
Confidence 588999999999999996 999999999999999999888873 235677788877655444
No 38
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=84.00 E-value=0.61 Score=40.44 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=43.2
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 166 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~ar 166 (591)
.||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+....+...+.
T Consensus 24 ~~Ie~L-~LSvRs~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 77 (98)
T 1coo_A 24 RPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 77 (98)
T ss_dssp SBGGGG-TCCTTTHHHHH-TTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHH
Confidence 889998 78889999996 999999999999999988655 88876665655553
No 39
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=82.85 E-value=1.1 Score=35.41 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHcC
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIARG 167 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~arG 167 (591)
+..++|||.+++.+|.+.+ .++.+|...+.+.|... +|.+.+..++.....
T Consensus 16 L~~i~giG~~~a~~Ll~~f--gs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 5778999999999997555 56889999999999877 676667777666543
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=80.92 E-value=1.3 Score=50.06 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=42.8
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 166 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~ar 166 (591)
+|+..|||||+..+++|. ..||+|+.||+.++.+.+... +|.+....+...++
T Consensus 646 ~~L~qlp~v~~~rar~L~-~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALY-NSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp GGGTTSTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred hhhhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 688899999999999996 999999999999999999877 55444444444444
No 41
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=76.77 E-value=1.1 Score=43.03 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=45.0
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHH-HHhhcCHHHHHHH--hCcchHHHHHHHHcCC
Q 007746 114 PIKKMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGI 168 (591)
Q Consensus 114 PI~kL~GIG~k~~~kL~~~lGI~Tig-DLa~~~~~~L~k~--FG~~~G~~L~~~arGi 168 (591)
-+..++|||++++.+|.+.+|-.++- .+...+.+.|.+. .|.+.+++++..+++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 34569999999999998777876655 4777899999988 7888899999999865
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=74.24 E-value=1.4 Score=50.86 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=28.6
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 144 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~ 144 (591)
.||..++|||++.+++|. ++||+|++||...
T Consensus 115 ~~~~~l~gvg~~~~~~l~-~lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLK-KLGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHHHH-TTTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHHHH-HCCCCcHHHHHhh
Confidence 489999999999999996 9999999999864
No 43
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.00 E-value=3.9 Score=43.40 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=45.2
Q ss_pred hcccCCCCcccC--CcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcch--HHHHHHHHc
Q 007746 109 LLDSLPIKKMKQ--LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT--GTWLWNIAR 166 (591)
Q Consensus 109 fL~~LPI~kL~G--IG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~--G~~L~~~ar 166 (591)
.-..+||.+|.+ |+..+.++|. ..||+|+.+|+..+...|.+..|... +..+...++
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~-~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLR-ESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccCccCHHHHHhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334578999976 7899999996 99999999999999999999988632 344555444
No 44
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=71.94 E-value=3 Score=40.16 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=41.5
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHHc
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 166 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~ar 166 (591)
+..++|||.+++.+|.+.+| ++.+|...+.+.|... +|.+.+..++...+
T Consensus 164 L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHh
Confidence 45789999999999986655 5899999999999888 77777888887765
No 45
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=71.14 E-value=2.1 Score=44.47 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccccHHhhcccCCCCcccCCcHHHHHHHHHhc
Q 007746 54 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 133 (591)
Q Consensus 54 ~~~~~lA~~IR~~I~~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~v~~fL~~LPI~kL~GIG~k~~~kL~~~l 133 (591)
|.+..+|..|++-+. || .-..|..+-.+. .+..+..| .+|||||.+++++|. ..
T Consensus 64 GIG~~~A~kI~E~l~--tG--------~~~~le~l~~~~---------~~~~l~~l------~~V~GiGpk~a~~l~-~~ 117 (335)
T 2fmp_A 64 GVGTKIAEKIDEFLA--TG--------KLRKLEKIRQDD---------TSSSINFL------TRVSGIGPSAARKFV-DE 117 (335)
T ss_dssp TCCHHHHHHHHHHHH--HS--------SCHHHHHHHHCH---------HHHHHHHH------TTSTTCCHHHHHHHH-HT
T ss_pred CCcHHHHHHHHHHHH--hC--------CcHHHHHHHccc---------chhHHHHH------hCCCCCCHHHHHHHH-Hc
Confidence 345677777777662 43 224444443221 12334444 459999999999997 55
Q ss_pred CCCcHHHHhhc
Q 007746 134 GVTTVGDLLKF 144 (591)
Q Consensus 134 GI~TigDLa~~ 144 (591)
||.|+.||...
T Consensus 118 Gi~tledL~~a 128 (335)
T 2fmp_A 118 GIKTLEDLRKN 128 (335)
T ss_dssp TCCSHHHHHTC
T ss_pred CCCCHHHHHHh
Confidence 99999999974
No 46
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=69.54 E-value=2.6 Score=40.89 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=44.7
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHH-HHhhcCHHHHHHH--hCcchHHHHHHHHcCC
Q 007746 114 PIKKMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGI 168 (591)
Q Consensus 114 PI~kL~GIG~k~~~kL~~~lGI~Tig-DLa~~~~~~L~k~--FG~~~G~~L~~~arGi 168 (591)
-+..++|||++++.+|.+.+|-.++- .+...+.+.|.+. .|.+.+++++..+++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~k 131 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDR 131 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 34569999999999998667776654 5778899999998 7888899999988753
No 47
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=68.73 E-value=3.8 Score=46.53 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=41.6
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHH
Q 007746 114 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNI 164 (591)
Q Consensus 114 PI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~ 164 (591)
..-+|.|+|.++.++|.+..+|.++.||..+..+.|... ||.+.+..|+..
T Consensus 442 ~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~a 494 (667)
T 1dgs_A 442 KAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQ 494 (667)
T ss_dssp TSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHH
T ss_pred cccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHH
Confidence 445789999999999986778999999999987777654 887777776654
No 48
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.47 E-value=1 Score=45.86 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 155 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~ 155 (591)
.||.+|+||+..+.++|+ ..||+|+.+++..+...|.+..|.
T Consensus 12 ~~~~~l~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~g~ 53 (324)
T 2z43_A 12 KTINDLPGISQTVINKLI-EAGYSSLETLAVASPQDLSVAAGI 53 (324)
T ss_dssp -------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHhhCC
Confidence 488999999999999996 999999999999998888877664
No 49
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=66.80 E-value=4.7 Score=45.83 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=42.4
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHH
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNI 164 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~ 164 (591)
-..-+|+|+|.++.++|.+..+|+++.||..+..+.|... ||.+.+..|+..
T Consensus 446 r~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 446 RRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNA 499 (671)
T ss_dssp TTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHH
Confidence 3455789999999999986677999999999998888764 887777777654
No 50
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=64.40 E-value=3.8 Score=42.59 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=24.8
Q ss_pred CcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 007746 116 KKMKQLGGKLGTSLQNELGVTTVGDLLKF 144 (591)
Q Consensus 116 ~kL~GIG~k~~~kL~~~lGI~TigDLa~~ 144 (591)
.+|||||.+++++|. ..||.|+.||...
T Consensus 99 ~~v~GiG~k~a~~l~-~~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWY-QQGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHH-HTTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHH-HcCCCCHHHHHHH
Confidence 479999999999997 5699999999864
No 51
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.07 E-value=9.2 Score=33.11 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=41.6
Q ss_pred cccHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHc
Q 007746 103 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166 (591)
Q Consensus 103 ~~~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~ar 166 (591)
++++..||. -.|+...+. +.||+.|-.||..++.++|+..+| .|.+||..+.
T Consensus 36 p~EV~~WL~------~kgFS~~tv----~~Lg~ltGaqLl~Ltk~eL~~vCg--EG~RlysqL~ 87 (99)
T 2e8m_A 36 PEDVKTWLQ------SKGFNPVTV----NSLGVLNGAQLFSLNKDELRTVCP--EGARVYSQIT 87 (99)
T ss_dssp TTHHHHHHH------HHTCCHHHH----HHTSSSCHHHHHHCCHHHHHHHCT--THHHHHHHHH
T ss_pred HHHHHHHHH------HcCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCC--chHHHHHHHH
Confidence 567777775 356765554 478999999999999999999999 4899998764
No 52
>3ai4_A Yeast enhanced green fluorescent protein, DNA POL IOTA; UBM, ubiquitin-binding motif, GFP, fusion, fluorescent prote replication; HET: CR2; 1.60A {Aequorea victoria} PDB: 2kwu_A* 2ktf_B* 2l0g_A*
Probab=63.55 E-value=2 Score=43.49 Aligned_cols=24 Identities=50% Similarity=0.945 Sum_probs=19.8
Q ss_pred ccCCccccccCChHHHHHHH-HhhC
Q 007746 544 EEIDPSVIDELPKEIQDEIQ-AWLR 567 (591)
Q Consensus 544 ~~id~~~~~el~~ei~~e~~-~~~~ 567 (591)
-++||.|+.|||+|.|+|+- .|=|
T Consensus 249 ~~vd~~vf~~lp~~vq~el~~~w~~ 273 (283)
T 3ai4_A 249 PDIDPQVFYELPEEVQKELMAEWER 273 (283)
T ss_dssp TTSCHHHHTTSCHHHHHHTTGGGC-
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHh
Confidence 36999999999999999974 5655
No 53
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=62.94 E-value=1.5 Score=43.29 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH-hCcchHHHHHHHH
Q 007746 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES-YGFNTGTWLWNIA 165 (591)
Q Consensus 112 ~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~-FG~~~G~~L~~~a 165 (591)
..++..|+|||.+++++|.+. ..++..|..++.+.|.+. +|.+.++.++...
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~--FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~f 224 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY--FGSVKKMKEATVEELQRANIPRAVAEKIYEKL 224 (226)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH--hCCHHHHHhCCHHHHHHcCCCHHHHHHHHHHh
Confidence 356889999999999999744 457888899999999888 5555566665543
No 54
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.77 E-value=4.7 Score=42.25 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.5
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLK 143 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~ 143 (591)
+.+|||||.+++++|- ..||.|+.||..
T Consensus 104 l~~I~GvG~kta~~l~-~~Gi~tledL~~ 131 (360)
T 2ihm_A 104 FTQVFGVGVKTANRWY-QEGLRTLDELRE 131 (360)
T ss_dssp HHTSTTCCHHHHHHHH-HTTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHH-HcCCCCHHHHHh
Confidence 3469999999999997 559999999984
No 55
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=60.35 E-value=9.3 Score=30.83 Aligned_cols=48 Identities=25% Similarity=0.201 Sum_probs=37.9
Q ss_pred ccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhC--cchHHHHHHHHc
Q 007746 118 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG--FNTGTWLWNIAR 166 (591)
Q Consensus 118 L~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG--~~~G~~L~~~ar 166 (591)
..||+...+.+|. .-|++|+.+++..|...|...=| ...+..|...|+
T Consensus 11 ~lgI~e~~a~~L~-~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 11 YLDIDEDFATVLV-EEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHTCCHHHHHHHH-HTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHH-HcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 4599999999996 99999999999999999977655 334555555544
No 56
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=59.87 E-value=5.7 Score=31.73 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 144 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~ 144 (591)
+..++|||.++++++.+..++.++.||...
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v 58 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKV 58 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGS
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhC
Confidence 345799999999999866677788887754
No 57
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=59.38 E-value=5.2 Score=42.33 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.6
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLK 143 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~ 143 (591)
+.+|||||.+++++|- ..||.|+.||..
T Consensus 123 l~~I~GvGpk~a~~ly-~~Gi~tledL~~ 150 (381)
T 1jms_A 123 FTSVFGVGLKTAEKWF-RMGFRTLSKIQS 150 (381)
T ss_dssp HHTSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred HHccCCCCHHHHHHHH-HcCCCcHHHHHh
Confidence 4469999999999997 559999999994
No 58
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=55.88 E-value=4 Score=45.31 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 144 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~ 144 (591)
+.+|||||++++.+|- .-||.|+.||...
T Consensus 99 L~~v~GVGpk~A~~i~-~~G~~s~edL~~a 127 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLW-LAGIDSLERLREA 127 (578)
T ss_dssp HTTSTTCCHHHHHHHH-HTTCCSHHHHHHH
T ss_pred HhCCCCcCHHHHHHHH-HcCCCCHHHHHHH
Confidence 4679999999999997 5599999999974
No 59
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=53.82 E-value=11 Score=42.17 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=42.3
Q ss_pred CCcccCCcHHHHHHHHHhcC-CCcHHHHhhcCHHHHHH--HhCcchHHHHHHHHc
Q 007746 115 IKKMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQE--SYGFNTGTWLWNIAR 166 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lG-I~TigDLa~~~~~~L~k--~FG~~~G~~L~~~ar 166 (591)
--+|.|+|.++.++|- ..| |+++.||..++.+.|.. .||.+.+..|++...
T Consensus 448 amdI~GlG~~~i~~L~-~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe 501 (586)
T 4glx_A 448 AMDVDGMGDKIIDQLV-EKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALE 501 (586)
T ss_dssp TTCCTTCCHHHHHHHH-HTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHH-hcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHH
Confidence 3467899999999997 777 69999999999999876 488878887776543
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=53.45 E-value=8.7 Score=48.15 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCc--chHHHHHHHHcCCCCCcc
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGISGEEV 173 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~--~~G~~L~~~arGid~~~V 173 (591)
.|+..|||||+..+++|. ..||+|+.||+.++.+.+.+.++. ..+..+.+.++....-.|
T Consensus 1557 ~~L~qip~i~~~~ar~l~-~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~~ 1618 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 1618 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHH-HHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCCEEE
T ss_pred cCEecCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCCceEE
Confidence 578999999999999996 999999999999999999888764 346667777776554443
No 61
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=51.21 E-value=11 Score=34.57 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=51.0
Q ss_pred HHhCCeEEEEecCCHHHHHHhccCCCCCCEEEeccccHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHH
Q 007746 69 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 148 (591)
Q Consensus 69 ~etGLt~SVGIA~NKlLAKLAS~~aKP~G~~vl~~~~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~ 148 (591)
+++|++. .++-|.+-+-...+.+++..-...|..+.+||..+ |++ +....+. ..||.+...|..++.+.
T Consensus 48 ~~lGIt~---~gHrkkil~ai~~L~~~~~~~~~~p~~v~~WL~~i------gL~-qY~~~F~-~~g~d~~~~l~~lt~~d 116 (149)
T 3sei_A 48 TAIGVTK---PGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMI------GLA-QYYKVLV-DNGYENIDFITDITWED 116 (149)
T ss_dssp HHTTCCS---HHHHHHHHHHHHTCCCCCCSCSSCCSCHHHHHHHT------TCG-GGHHHHH-HTTCCSHHHHTTCCHHH
T ss_pred HHcCCCC---HHHHHHHHHHHHHHHhccccCCCCcccHHHHHHHc------Cch-hhHHHHH-HCCCchHHHHhhCCHHH
Confidence 4566653 24544444444445666543223467899999877 454 5566775 89999999999999999
Q ss_pred HHHHhCcc
Q 007746 149 LQESYGFN 156 (591)
Q Consensus 149 L~k~FG~~ 156 (591)
| +.+|+.
T Consensus 117 L-~~lGI~ 123 (149)
T 3sei_A 117 L-QEIGIT 123 (149)
T ss_dssp H-HHHTCC
T ss_pred H-HHCCCC
Confidence 9 568874
No 62
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=51.13 E-value=11 Score=36.78 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=43.2
Q ss_pred ccCCcHHHHHHHHHhcCCCcHH-HHhhcCHHHHHHH--hCcchHHHHHHHHcCCC
Q 007746 118 MKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGIS 169 (591)
Q Consensus 118 L~GIG~k~~~kL~~~lGI~Tig-DLa~~~~~~L~k~--FG~~~G~~L~~~arGid 169 (591)
++|||++++.++.+.+|..++. .+..-+.+.|.+. .|+++++++...+++.-
T Consensus 93 v~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 93 VSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp STTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred cCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999998778887776 3667788888887 56778999999999864
No 63
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=49.79 E-value=13 Score=39.96 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHcCCC
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 169 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~arGid 169 (591)
|..|+|||+.++++|.+.|| |+.-+..++.+.|+. -|. |..-.+...|..
T Consensus 470 LtAIaGIGp~tAeRLLEkFG--SVe~Vm~AteDELRe-dGI--GekqarrI~gl~ 519 (685)
T 4gfj_A 470 LISIRGIDRERAERLLKKYG--GYSKVREAGVEELRE-DGL--TDAQIRELKGLK 519 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHHT--SHHHHHHSCHHHHHH-TTC--CHHHHHHHHTCH
T ss_pred eeccCCCCHHHHHHHHHHhc--CHHHHHhCCHHHHHH-ccc--cHHHHHHHhhHH
Confidence 45689999999999988888 778888888888855 775 566667777763
No 64
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=46.15 E-value=4.2 Score=41.76 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCccc--CCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcc--hHHHHHHHHc
Q 007746 114 PIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 166 (591)
Q Consensus 114 PI~kL~--GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~--~G~~L~~~ar 166 (591)
||.+|+ ||+..+.++|+ ..||+|+.+|+..+...|.+..|.. .+..+.+.|.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLK-SVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAAN 81 (343)
T ss_dssp ---------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 889998 99999999996 9999999999999998888776642 2344444444
No 65
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=45.25 E-value=7.9 Score=42.85 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=35.9
Q ss_pred ccccHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhh-cCHHHHHHHhCcchHHHHHHHHcCCCC
Q 007746 102 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK-FSEDKLQESYGFNTGTWLWNIARGISG 170 (591)
Q Consensus 102 ~~~~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~-~~~~~L~k~FG~~~G~~L~~~arGid~ 170 (591)
+.+++...+..-.|.++||||+|+++++ .+|+....|+.. ++...... .+..+...+++++.
T Consensus 117 ~~~~l~~a~~~~~l~~~~GiG~k~a~~i--~~~l~~~~~~~~r~~~~e~~~-----~~~~i~~~l~~~~~ 179 (575)
T 3b0x_A 117 SLEKLKAALDRGDLTRLKGFGPKRAERI--REGLALAQAAGKRRPLGAVLS-----LARSLLEAIRALPG 179 (575)
T ss_dssp SHHHHHHHHHHTGGGGSTTCCHHHHHHH--HHHHHHHHHHTCCEEHHHHHH-----HHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHcCCcccCCCCCccHHHHH--HHHHHHHHHhccceeHHHHHH-----HHHHHHHHHHhCCC
Confidence 3445555444444667777777777776 356666666554 34444433 24566677777654
No 66
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=44.75 E-value=25 Score=30.42 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=42.3
Q ss_pred cccHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCcchHHHHHHHHc
Q 007746 103 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 166 (591)
Q Consensus 103 ~~~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~~~G~~L~~~ar 166 (591)
++++..||. -.|++..+. +.||+.|-.||..++.+.|+..+| .-|.+||..+.
T Consensus 26 p~EV~~WL~------~kgFS~~tv----~~Lg~ltGaqLf~Ltk~eL~~vCg-~EG~RlysqL~ 78 (99)
T 1wwu_A 26 PDEVRAWLE------AKAFSPRIV----ENLGILTGPQLFSLNKEELKKVCG-EEGVRVYSQLT 78 (99)
T ss_dssp HHHHHHHHH------HHTCCTTHH----HHTTSSCHHHHHTCCHHHHHHHHT-TTHHHHHHHHH
T ss_pred HHHHHHHHH------HcCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCc-chhHHHHHHHH
Confidence 467777776 346665544 368999999999999999999999 57999998765
No 67
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=37.13 E-value=15 Score=37.95 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=32.6
Q ss_pred CCcccCCcHHHHHHHHHhc----CCCcHHHHhhcCHHHHHHHh------CcchHHHHHHHHcCCCCC
Q 007746 115 IKKMKQLGGKLGTSLQNEL----GVTTVGDLLKFSEDKLQESY------GFNTGTWLWNIARGISGE 171 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~l----GI~TigDLa~~~~~~L~k~F------G~~~G~~L~~~arGid~~ 171 (591)
+.+|||||+++++++. .+ .+..+.+|... .. +.+.| |++++..||+. |+..-
T Consensus 59 l~~lpGIG~~~A~kI~-E~l~tG~~~~le~l~~~-~p-~l~ll~~v~GiG~k~a~~l~~~--Gi~tl 120 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKII-EILESGHLRKLDHISES-VP-VLELFSNIWGAGTKTAQMWYQQ--GFRSL 120 (335)
T ss_dssp HHTSTTCCHHHHHHHH-HHHHSSSCGGGGGCCTT-HH-HHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCccHHHHHHHH-HHHHcCCchHHHHHhhh-hH-HHHHHhcCCCcCHHHHHHHHHc--CCCCH
Confidence 5689999999999997 44 24445555321 12 33344 45667777765 87653
No 68
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=36.42 E-value=18 Score=39.98 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=36.0
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcC-HHHHHHH--hCcchHHHHHHHHcC
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFS-EDKLQES--YGFNTGTWLWNIARG 167 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~-~~~L~k~--FG~~~G~~L~~~arG 167 (591)
+..+||||++++.++...+|+.|+.||...- ...|.+. ||.++++++...+..
T Consensus 95 l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~ 150 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLAL 150 (575)
T ss_dssp HHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHH
Confidence 3468999999999987468999999998742 1223332 566666666444443
No 69
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=34.16 E-value=23 Score=29.72 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=19.9
Q ss_pred CcccCCcHHHHHHHHHhc----CCCcHHHHhhc
Q 007746 116 KKMKQLGGKLGTSLQNEL----GVTTVGDLLKF 144 (591)
Q Consensus 116 ~kL~GIG~k~~~kL~~~l----GI~TigDLa~~ 144 (591)
..|+|||.++++++.+.. .+.++.||..+
T Consensus 43 ~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v 75 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWRELHGPFSQVEDLERV 75 (98)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGS
T ss_pred HHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhC
Confidence 457899998888886433 35667777654
No 70
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=34.05 E-value=23 Score=34.63 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.3
Q ss_pred CCcccCCcHHHHHHHH
Q 007746 115 IKKMKQLGGKLGTSLQ 130 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~ 130 (591)
+++|||||+|+++||.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 5679999999999996
No 71
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=31.87 E-value=29 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.3
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 144 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~ 144 (591)
+..|||||+++++++-+.=++.++.||...
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~~V 57 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVLNI 57 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGGGC
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHHhc
Confidence 445899999999999743347888888865
No 72
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=31.76 E-value=16 Score=40.55 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=53.5
Q ss_pred EecCCHHHHHHhccCCCCCCEEEeccccHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhh-cCHHHHHHHhCcc
Q 007746 78 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK-FSEDKLQESYGFN 156 (591)
Q Consensus 78 GIA~NKlLAKLAS~~aKP~G~~vl~~~~v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~-~~~~~L~k~FG~~ 156 (591)
|||+.+-++-+.. | +.+.+++...+..-.|.+++|||.|+++++. .||.-..++.. ++......
T Consensus 104 GVGpk~A~~i~~~------G--~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~--~~l~~~~~~~~r~~~~e~~~----- 168 (578)
T 2w9m_A 104 GLGPKKIRSLWLA------G--IDSLERLREAAESGELAGLKGFGAKSAATIL--ENVVFLFEARQRQSLRAGLA----- 168 (578)
T ss_dssp TCCHHHHHHHHHT------T--CCSHHHHHHHHHHTTTTTSTTCCHHHHHHHH--HHHHHHHHHCSSEEHHHHHH-----
T ss_pred CcCHHHHHHHHHc------C--CCCHHHHHHHHhhCccccCCCCCHHHHHHHH--HHHHHHHhhcCCeeHHHHHH-----
Confidence 8888666665543 2 2356677776666689999999999999983 66766677665 45554443
Q ss_pred hHHHHHHHHcCCC
Q 007746 157 TGTWLWNIARGIS 169 (591)
Q Consensus 157 ~G~~L~~~arGid 169 (591)
.+..+...+++++
T Consensus 169 ~~~~i~~~l~~~~ 181 (578)
T 2w9m_A 169 VAEELAGALTDLS 181 (578)
T ss_dssp HHHHHHHHTGGGC
T ss_pred HHHHHHHHHHhCC
Confidence 3566778888776
No 73
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=31.11 E-value=30 Score=30.50 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHH
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 150 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~ 150 (591)
++.+.|||..++..+...+||.--.-+-+++.+++.
T Consensus 18 Lt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~ 53 (114)
T 3r8n_M 18 LTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQID 53 (114)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHH
T ss_pred HhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHH
Confidence 578999999999998889999643333333444443
No 74
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=29.53 E-value=30 Score=31.86 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHHH
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQES 152 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~k~ 152 (591)
.-++.|.|||+.++..+...+||. .++||-+-..+.|...
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~ 72 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQI 72 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHH
T ss_pred hhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHH
Confidence 346789999999999988899995 5666554333344433
No 75
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=29.44 E-value=36 Score=35.47 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCcccCCcHHHHHHHHHhc--C-CCcHHHHhh--cC--HHHHHHHhC--cchHHHHHHHHcCCCCC
Q 007746 115 IKKMKQLGGKLGTSLQNEL--G-VTTVGDLLK--FS--EDKLQESYG--FNTGTWLWNIARGISGE 171 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~l--G-I~TigDLa~--~~--~~~L~k~FG--~~~G~~L~~~arGid~~ 171 (591)
+.+|||||.++++++.+-+ | +..+.+|.. .+ ...|.+.+| ++++..||+. |+..-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~--Gi~tl 126 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE--GLRTL 126 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc--CCCCH
Confidence 7889999999999986322 3 344555543 11 234555555 4567777765 87653
No 76
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=28.88 E-value=49 Score=41.50 Aligned_cols=61 Identities=10% Similarity=0.229 Sum_probs=51.1
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhCc-chHHHHHHHHcCCCCCccc
Q 007746 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNIARGISGEEVQ 174 (591)
Q Consensus 112 ~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG~-~~G~~L~~~arGid~~~V~ 174 (591)
..|++.++|||....++|. ..|+ ++.+|.+++...|...++. ..|..+++.++-...-.+.
T Consensus 725 ~~~L~q~~~i~~~~~~~l~-~~~~-~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~ 786 (1724)
T 4f92_B 725 MCPLRQFRKLPEEVVKKIE-KKNF-PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELS 786 (1724)
T ss_dssp SCGGGGSTTSCHHHHHHHH-TSSC-CGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEE
T ss_pred CCceecCCCCCHHHHHHHH-hcCC-CHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEE
Confidence 4689999999999999995 8999 9999999999888777652 3689999999987665544
No 77
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=28.34 E-value=43 Score=38.04 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHH
Q 007746 55 CGVLIVTELRMQV 67 (591)
Q Consensus 55 ~~~~lA~~IR~~I 67 (591)
|++++.++|.--+
T Consensus 432 Cpaq~~~~l~hf~ 444 (671)
T 2owo_A 432 CGAQRKESLKHFV 444 (671)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 5655555555444
No 78
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=28.09 E-value=31 Score=34.03 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.2
Q ss_pred CCcccCCcHHHHHHHH
Q 007746 115 IKKMKQLGGKLGTSLQ 130 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~ 130 (591)
+++|||||+|+++||.
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 4678999999999996
No 79
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=26.02 E-value=45 Score=35.08 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCcccCCcHHHHHHHHHhc--C-CCcHHHHhh-c-C--HHHHHHHhC--cchHHHHHHHHcCCCCC
Q 007746 115 IKKMKQLGGKLGTSLQNEL--G-VTTVGDLLK-F-S--EDKLQESYG--FNTGTWLWNIARGISGE 171 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~l--G-I~TigDLa~-~-~--~~~L~k~FG--~~~G~~L~~~arGid~~ 171 (591)
+.+|||||+++++++.+-+ | +..+.+|.. - + ...|.+.+| ++++..||+. |+..-
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~--Gi~tl 145 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM--GFRTL 145 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc--CCCcH
Confidence 7899999999999997322 3 334444543 1 1 224445554 4567777765 87653
No 80
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=25.97 E-value=35 Score=31.76 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHHHhC
Q 007746 114 PIKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESYG 154 (591)
Q Consensus 114 PI~kL~GIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~k~FG 154 (591)
-++.|.|||+.++..+...+||. .++||-+-....|...+.
T Consensus 31 aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~ 74 (155)
T 2xzm_M 31 ALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIA 74 (155)
T ss_dssp HHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHH
T ss_pred eeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHh
Confidence 35789999999999998899995 466665544444544443
No 81
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.91 E-value=38 Score=31.39 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHH
Q 007746 115 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQ 150 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~ 150 (591)
++.|.|||+.++..+...+||. .++||-+-..+.|.
T Consensus 30 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~ 68 (152)
T 3iz6_M 30 LTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLM 68 (152)
T ss_dssp HTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHH
T ss_pred hhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHH
Confidence 5678999999999988899995 56666543333333
No 82
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=25.18 E-value=45 Score=30.31 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=30.4
Q ss_pred EEeccccHHhhcccCCCCcccCCcHHHHHHHHHhcC-CCcHHHHhhcC
Q 007746 99 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-VTTVGDLLKFS 145 (591)
Q Consensus 99 ~vl~~~~v~~fL~~LPI~kL~GIG~k~~~kL~~~lG-I~TigDLa~~~ 145 (591)
.-|....+.+|. ++||||++.++++- ..| ..++.||.+.+
T Consensus 55 IniNtA~~~eL~------~LpGiGp~~A~~II-~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 55 IDLNNTNIAAFI------QYRGLYPTLAKLIV-KNAPYESVEDVLNIP 95 (134)
T ss_dssp EETTTSCGGGGG------GSTTCTHHHHHHHH-HTCCCSSGGGGGGCT
T ss_pred eeCcccCHHHHH------HCCCCCHHHHHHHH-HcCCCCCHHHHHhCC
Confidence 445556666554 48999999999997 664 88999999863
No 83
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=25.17 E-value=39 Score=34.86 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=33.4
Q ss_pred CCcccCCcHHHHHHHHHhc--C-CCcHHHHhhcC----HHHHHHHhC--cchHHHHHHHHcCCCCC
Q 007746 115 IKKMKQLGGKLGTSLQNEL--G-VTTVGDLLKFS----EDKLQESYG--FNTGTWLWNIARGISGE 171 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~l--G-I~TigDLa~~~----~~~L~k~FG--~~~G~~L~~~arGid~~ 171 (591)
+..|||||+++++++.+-+ | +..+.+|..-+ ...|.+.+| ++++..||+. |+..-
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~--Gi~tl 122 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE--GIKTL 122 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc--CCCCH
Confidence 5789999999999997322 2 33344444332 233444544 4567777765 87653
No 84
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=24.05 E-value=29 Score=32.27 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=30.4
Q ss_pred CCccchhhhhhcCCCCchhhhcchHHHHHHHHHHHHHHH--------hCCeEEEEecC
Q 007746 32 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKE--------TEFTCSAGIAH 81 (591)
Q Consensus 32 ~~~ySIDE~fl~lDvt~~~~l~~~~~~lA~~IR~~I~~e--------tGLt~SVGIA~ 81 (591)
...++=|||.+.+.-... .....++.+|++.|.+. +.+++|+||+.
T Consensus 77 v~R~gGDEF~ill~~~~~----~~~~~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia~ 130 (179)
T 3tvk_A 77 VYRYGGEEFIIIVKAAND----EEACRAGVRICQLVDNHAITHSEGHINITVTAGVSR 130 (179)
T ss_dssp EEECSSSEEEEEEEESSH----HHHHHHHHHHHHHHHHSCEEETTEEECCCEEEEEEE
T ss_pred EEEccCCEEEEEcCCCCH----HHHHHHHHHHHHHHHcCCcccCCceEEEEEEEEEEe
Confidence 455666888764332221 24567888999988652 36899999983
No 85
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=23.06 E-value=33 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCcccCCcHHHHHHHHHhcCCCc---HHHHhh
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTT---VGDLLK 143 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~T---igDLa~ 143 (591)
++.+.|||..++..+...+||.- ++||-+
T Consensus 19 Lt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~ 50 (126)
T 2vqe_M 19 LTYIYGIGKARAKEALEKTGINPATRVKDLTE 50 (126)
T ss_dssp HTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCH
T ss_pred hhccccccHHHHHHHHHHcCCCcccccCcCCH
Confidence 57899999999999988999954 555544
No 86
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=22.23 E-value=71 Score=36.22 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=33.4
Q ss_pred HHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hCcchHHHHHHHH
Q 007746 106 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 165 (591)
Q Consensus 106 v~~fL~~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~--FG~~~G~~L~~~a 165 (591)
+..||..| .++|||.+++++|.+.| .++..|...+.+.|... +|.+.+..++...
T Consensus 503 l~R~L~al---GI~~VG~~~Ak~La~~F--gsl~~l~~As~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 503 LERLLYAL---GLPGVGEVLARNLARRF--GTMDRLLEASLEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp HHHHHHHT---TCSSCCHHHHHHHHHTT--SBHHHHTTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhhHhh---ccCCccHHHHHHHHHHc--CCHHHHHhCCHHHHHhccCcCHHHHHHHHHHH
Confidence 34455444 34677888888885333 46677777777777766 4544455555443
No 87
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.95 E-value=36 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.1
Q ss_pred CCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHHHh
Q 007746 115 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESY 153 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~k~F 153 (591)
++.|.|||+.++..+...+||. .++||-+-..+.|...+
T Consensus 25 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i 66 (148)
T 3j20_O 25 LTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66 (148)
T ss_dssp HHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHH
T ss_pred hhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHH
Confidence 4678999999999998899995 46666554444444443
No 88
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=21.71 E-value=22 Score=28.98 Aligned_cols=36 Identities=11% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCcccccccccccccccccCCccccccCChHHHHHH
Q 007746 527 CGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEI 562 (591)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~id~~~~~el~~ei~~e~ 562 (591)
|+.+.+..-+|+=.|.=+-||.+++.+|-+|+-+++
T Consensus 12 aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~L 47 (72)
T 3idw_A 12 CGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTL 47 (72)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHc
Confidence 666666667889899999999999999999999874
No 89
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.34 E-value=44 Score=29.78 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=23.7
Q ss_pred cccccccccCCc--------cccccCChHHHHHHHH
Q 007746 537 ESWKLRIEEIDP--------SVIDELPKEIQDEIQA 564 (591)
Q Consensus 537 ~~~~~~~~~id~--------~~~~el~~ei~~e~~~ 564 (591)
.+|-=+...||- +|-++||.||++|+..
T Consensus 71 ~SwVAk~~~i~~~vPG~YAlkV~g~lp~~i~~~le~ 106 (120)
T 3h7h_A 71 DSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKS 106 (120)
T ss_dssp GCHHHHHTTCTTSCSEEEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCeEEEEecCcCCHHHHHHHHH
Confidence 477777677776 8999999999999987
No 90
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=21.24 E-value=52 Score=34.79 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=35.6
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhC--cchHHHHHH
Q 007746 115 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG--FNTGTWLWN 163 (591)
Q Consensus 115 I~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k~FG--~~~G~~L~~ 163 (591)
+.++|+||.+++++|-+.|| |+..|..++.+.|.+.=| .+.|..+.+
T Consensus 317 Ls~IPrl~~~iae~Lv~~FG--sLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 317 LKTVARIPLSIGYNVVRMFK--TLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHTSCCCHHHHHHHHHHHC--SHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHhC--CHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 35689999999999976666 899999999999988744 444444433
No 91
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=20.55 E-value=21 Score=36.78 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=0.0
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHH--HHhCcchHHHH
Q 007746 112 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ--ESYGFNTGTWL 161 (591)
Q Consensus 112 ~LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~--k~FG~~~G~~L 161 (591)
.+||.+| .+.-+...-|. +.||+|+|||.+.+.+.|. +-||.+....+
T Consensus 253 ~~~i~~L-~LsvRs~NcLk-~a~I~ti~dL~~~se~~l~~~~n~G~kSl~Ei 302 (315)
T 2a6h_A 253 DLPLEEL-GLSTRVLHSLK-EEGIESVRALLALNLKDLKNIPGIGERSLEEI 302 (315)
T ss_dssp ----------------------------------------------------
T ss_pred cCcHHHc-cCcHHHHHHHH-HcCCcCHHHHhhCCHHHHhcCCCCCcchHHHH
Confidence 3788888 57778888895 9999999999999988874 44887654433
No 92
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=20.25 E-value=22 Score=36.97 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHH--HhCcchHHH
Q 007746 113 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE--SYGFNTGTW 160 (591)
Q Consensus 113 LPI~kL~GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~k--~FG~~~G~~ 160 (591)
.||.+| .+.-+...-|. +.||+|++||.+.+.+.|.+ -||.+....
T Consensus 255 ~~I~eL-eLsvRs~NCLK-ra~I~tv~dL~~~se~dLlki~n~G~kSl~E 302 (329)
T 3lu0_A 255 RPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 (329)
T ss_dssp --------------------------------------------------
T ss_pred hhHHhh-cCCHHHHHHHH-HcCCcCHHHHhhCCHHHHhhCcCCChhhHHH
Confidence 478887 57778888995 99999999999999888744 377654333
Done!