BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007747
(591 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/623 (41%), Positives = 360/623 (57%), Gaps = 72/623 (11%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K E+ N
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTK---EKAKN------ 166
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
+ RG K E + + + +G++ G EN + K ++ K
Sbjct: 167 -------NKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQK 219
Query: 224 GGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------N 272
GK D + PK+K K RVW+ +K LD++ P NG+ N
Sbjct: 220 HGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDIN 278
Query: 273 IEVEAADHGESMMDKEEVFSSDSESEEDEEVGKHNKPDAKK--TGWFSSMFQSIAGKANL 330
+ + G + D D S +DE ++ KP A K G M + + G +L
Sbjct: 279 L-IRGTGPGGQLQD------LDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSL 331
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451
Query: 451 CDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNG 497
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511
Query: 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557
DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LAD
Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 571
Query: 558 SSSPNPQLIDGILLTKFDTIDDK 580
S + P+LIDGI+LTKFDTIDDK
Sbjct: 572 SMAQTPRLIDGIVLTKFDTIDDK 594
>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog
OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
Length = 614
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 257/604 (42%), Positives = 353/604 (58%), Gaps = 55/604 (9%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ ++IFT+GG++LW GN+ S I++LIR +LEER+ A + Y+ A ++
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLA--VQ 56
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQLRKE 119
+ NEL LV+ A++Q+++ L Y+D LA M+ +F E Y D + D DFD +R++
Sbjct: 57 FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116
Query: 120 AEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
AE + + K+ + + N +K S ++ DD R
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQK-------------SKKTVASMIQDDKKPVEKR----- 158
Query: 180 NGHSNVGNVEIEESRVTGVANGKEN-TSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNP 238
V I+E+ + T S + + K +KLR K T S
Sbjct: 159 --------VNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKL-TPTKKTSPSDSKS 209
Query: 239 DPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESMMDKEEVFSS 293
+K KK RVWD +S + LD + P NI E + ++ +V S
Sbjct: 210 SKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESE 269
Query: 294 DSESEEDE----EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK 349
D ED E + + K G S F+ I G + ADL+PAL+ ++D L++K
Sbjct: 270 DEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISK 329
Query: 350 NVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA 409
NVA EIA KLC+SVAASL+GK++ +F I+S V+ A+ E+LVRIL+P+R IDI+RD +
Sbjct: 330 NVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALES 389
Query: 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL 469
K +PY ++F GVNGVGKSTNLAK+ +WL+++ +V++AACDTFR+GAVEQLRTH R L
Sbjct: 390 KRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHL 449
Query: 470 Q-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 516
V ++EKGY KD A +A EAI+ A DVVLVDTAGRMQDNEPLM
Sbjct: 450 NALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLM 509
Query: 517 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576
R+LSKLI +NNPDLVLFVGEALVGN+AVDQL KFNQ LAD SS+ NP +IDGI+LTKFDT
Sbjct: 510 RSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDT 569
Query: 577 IDDK 580
IDDK
Sbjct: 570 IDDK 573
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 253/627 (40%), Positives = 358/627 (57%), Gaps = 77/627 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K + G
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKK 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
DG + E +G+ G EN ++SK +++R
Sbjct: 176 EGSDGPLATSKAAPAEK---------------SGLPVGPENGE------ELSKEEQIRRK 214
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW S + LD++ P +N
Sbjct: 215 REEFIQKHGRGMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPT----TNGA 270
Query: 275 VEAADHGESMMDK-----EEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAG 326
EAA + + + ++ D S +DE +++ KP A K G M + + G
Sbjct: 271 PEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVG 330
Query: 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAM 386
+L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A+
Sbjct: 331 SKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL 390
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
+E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL++ SV
Sbjct: 391 QESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSV 450
Query: 447 MMAACDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEA 493
++AACDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A
Sbjct: 451 LIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFA 510
Query: 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553
G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+
Sbjct: 511 RNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRA 570
Query: 554 LADLSSSPNPQLIDGILLTKFDTIDDK 580
LAD S + P+LIDGI+LTKFDTIDDK
Sbjct: 571 LADHSMAQTPRLIDGIVLTKFDTIDDK 597
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 254/623 (40%), Positives = 357/623 (57%), Gaps = 70/623 (11%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
F +L +EAE +S ++ P K + + K R + G + +
Sbjct: 116 DFLRLLREAE-------ESSKIRAPTTMKKFEDSEKAKKPV-RSMIETRGEKPKEKAKNS 167
Query: 172 NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-------NKG 224
+G K E + + + +G+ G EN ++SK + +R K
Sbjct: 168 KKKGAKKEGSDGPLATSKPVPAEKSGLPVGPEN------GVELSKEELIRRKREEFIQKH 221
Query: 225 GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------NI 273
G+ + + PK+K K RVW+ +K LD++ P NG+ N+
Sbjct: 222 GRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINL 280
Query: 274 EVEAADHGESMMDKEEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAGKANL 330
+ G + D D S +DE +++ KP A K G M + + G +L
Sbjct: 281 -IRGTGSGGQLQDL------DCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSL 333
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453
Query: 451 CDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNG 497
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513
Query: 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557
DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LAD
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 573
Query: 558 SSSPNPQLIDGILLTKFDTIDDK 580
S + P+LIDGI+LTKFDTIDDK
Sbjct: 574 SMAQTPRLIDGIVLTKFDTIDDK 596
>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis
familiaris GN=SRPR PE=2 SV=2
Length = 638
Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/629 (39%), Positives = 357/629 (56%), Gaps = 82/629 (13%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS------------- 107
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEMFRQLRKEAEARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
DF + R+ + ++ RA ++ + S++ KP+ ++ + G+ K + +
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
++D L G + V E+S G+ G EN ++SK + +R
Sbjct: 176 SSDG---------PLATGKA----VPAEKS---GLPAGPEN------GVELSKEELIRRK 213
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW +K LD++ P +
Sbjct: 214 REEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGAPDAA 273
Query: 275 -------VEAADHGESMMDKEEVFSSDSESEEDEEVGKH-NKPDAKK--TGWFSSMFQSI 324
+ G + D D S +DEE ++ +KP A K G M + +
Sbjct: 274 PPEDINLIRGTGPGGQLQDL------DCSSSDDEETAQNASKPSATKGTLGGMFGMLKGL 327
Query: 325 AGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQA 384
G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+
Sbjct: 328 VGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQ 387
Query: 385 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444
A++E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL++
Sbjct: 388 ALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGF 447
Query: 445 SVMMAACDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQ 491
SV++AACDTFR+GAVE +RTH RRL V +FEKGY KD A +A EAI
Sbjct: 448 SVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEAIA 507
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN
Sbjct: 508 FARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFN 567
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDK 580
+ LAD S + P+LIDGI+LTKFDTIDDK
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDK 596
>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha OS=Dictyostelium
discoideum GN=srpr PE=3 SV=1
Length = 615
Score = 322 bits (824), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 160/272 (58%), Positives = 201/272 (73%), Gaps = 3/272 (1%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
AK F F + G +DK DLEP L K L KNVA ++A+K+ +S+ LEGK
Sbjct: 304 AKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGK 363
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
KLA+F ++S+V+ ME+ + RILTP+R+IDILR+V A K +R PY +VF GVNGVGKST
Sbjct: 364 KLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PYSIVFSGVNGVGKST 422
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
NLAKV YWL + M+AACDTFRSGA+EQL+THA RL V +FE+GY KD A VA++AI
Sbjct: 423 NLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSKDAASVAQDAI 482
Query: 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550
A G DVVL+DT GRMQ+NEPLM+ALSKL+ NN DLVLFVGEALVGND VDQL+KF
Sbjct: 483 AFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLFVGEALVGNDGVDQLTKF 542
Query: 551 NQKLADLSSSPNPQL--IDGILLTKFDTIDDK 580
++ L+ L+++ + IDGI+LTKFDTIDDK
Sbjct: 543 DKSLSLLANTTQTHIRTIDGIILTKFDTIDDK 574
>sp|O43032|SRPR_SCHPO Signal recognition particle receptor subunit alpha homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp101 PE=3 SV=1
Length = 547
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 160/261 (61%), Gaps = 15/261 (5%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
I GK L + DL P LK +++ L KNVA IA +LCESV ASL KK+ SF + + V
Sbjct: 251 IGGKY-LKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVN 309
Query: 384 AAMEEALVRILTPRRSIDILRDVHAA-KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442
A + L +ILTP S+D+L + + K + +PY + +GVNGVGKST LAK+AYWLL +
Sbjct: 310 KAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSN 369
Query: 443 KVSVMMAACDTFRSGAVEQLRTHARRLQ------VPIFEKGYEKDPAIVAKEAIQEATRN 496
+++AACDTFRSGA+EQL H + LQ + +F +GY KD + V K A++ A +N
Sbjct: 370 NFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQN 429
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556
DV+L+DTAGR +++ LM +L K D + V EALVG D++ Q F A
Sbjct: 430 SFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDSLAQAKHFQ---AS 486
Query: 557 LSSSPNPQLIDGILLTKFDTI 577
L P +DG +++K DT+
Sbjct: 487 LYHRP----LDGFIISKVDTV 503
Score = 39.7 bits (91), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLL-EERSGLASFNYDSAGAAYTL 59
M++ I +GG++LW K+ + + + L L E+R+ + +D YT+
Sbjct: 1 MIDLFAIVNKGGIVLW--KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDR----YTM 54
Query: 60 KWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKE 119
++ + +VFV V+Q + + Y LL F ++ K D RQ+ E
Sbjct: 55 QYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED--------RQVPNE 106
Query: 120 AEA 122
AE
Sbjct: 107 AEV 109
>sp|P32916|SRPR_YEAST Signal recognition particle receptor subunit alpha homolog
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRP101 PE=1 SV=2
Length = 621
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 211/402 (52%), Gaps = 55/402 (13%)
Query: 218 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEV 275
+KLR+ GKK T N +K + + D+ E +KLDF+ N S + +
Sbjct: 189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVAL 243
Query: 276 EAADHGESMMDKEEVFS------SDSESEEDEEVGKHNKPDAKKTGWFSSMF----QSIA 325
++ + +S D+ E D S +E+ N +AK +G+ S+ F + +
Sbjct: 244 DSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGN--EAKNSGYVSTAFGFLQKHVL 301
Query: 326 GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAA 385
G ++++DL+ L+ L +L+TKNVA E A+ L + V+ L G K A++T + + + +
Sbjct: 302 GNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARES 361
Query: 386 MEEALVRILTPRRSIDILRDVHAAKEQRK------PYVVVFVGVNGVGKSTNLAKVAYWL 439
+ +AL +ILTP S+D+LR++ + + ++ PYV VGVNGVGKSTNL+K+A+WL
Sbjct: 362 LTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWL 421
Query: 440 LQHKVSVMMAACDTFRSGAVEQLRTHARRL----------------------QVPIFEKG 477
LQ+ V++ ACDTFRSGAVEQLR H L V +FE G
Sbjct: 422 LQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFEAG 481
Query: 478 YEKDPAI--VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535
Y + +AK+AI+ + D+VL+DTAGR ++ LM L PD ++ VG
Sbjct: 482 YGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVG 541
Query: 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577
EALVG D+V Q FN + +D +++K DT+
Sbjct: 542 EALVGTDSVQQAKNFNDAFG------KGRNLDFFIISKCDTV 577
>sp|Q57739|FTSY_METJA Signal recognition particle receptor FtsY OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=ftsY PE=3 SV=1
Length = 409
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 147/242 (60%), Gaps = 11/242 (4%)
Query: 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393
D+E L+ L+ L+ +VA E+ EKL E++ L G+K++ + I A++ A+ I
Sbjct: 122 DIEDVLEELEIALLEADVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNI 181
Query: 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453
L+ + IDI + K + KP V+VFVG+NG GK+T +AK+AY L Q SV++AA DT
Sbjct: 182 LSQEK-IDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDT 240
Query: 454 FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE 513
FR+GA+EQL HA+ + V + + D A V +AIQ A G DVVL DTAGR N
Sbjct: 241 FRAGAIEQLEQHAKNVGVKVIKHKPGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNV 300
Query: 514 PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573
LM + K++ + PDLV+FVG+AL GNDAV Q +FN+ + IDGI+LTK
Sbjct: 301 NLMEEIKKVVRVTKPDLVIFVGDALTGNDAVYQAEEFNRAVN----------IDGIILTK 350
Query: 574 FD 575
D
Sbjct: 351 VD 352
>sp|Q8TIN7|FTSY_METAC Signal recognition particle receptor FtsY OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=ftsY PE=3 SV=1
Length = 417
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 150/248 (60%), Gaps = 18/248 (7%)
Query: 330 LDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG--KKLASFTRISSIVQAAME 387
LD DLE L L+ L+ ++A ++E + ESV L G K++ S T IV+AA++
Sbjct: 140 LDNKDLEEPLWELEMGLLESDLALSVSEAIVESVKNQLTGTTKRIGSNT--GEIVEAALK 197
Query: 388 EALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 447
+A++ +++ + D V K + KP +VFVG+NG GK+T+++K+ LL+ SV+
Sbjct: 198 KAILEVVSAN-TFDFDEYV---KNREKPVHIVFVGINGTGKTTSISKITNRLLKSGYSVV 253
Query: 448 MAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507
+AA DTFR+GA++QL HA RL V + + DPA V +A+Q A + D VL DTAG
Sbjct: 254 LAAGDTFRAGAIDQLGIHANRLGVKMIKHQAGADPAAVIYDAVQYAKAHKIDFVLSDTAG 313
Query: 508 RMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567
RM N LM + K+ ++ PDL++FV EA+ GNDAV++ ++FN+ + ID
Sbjct: 314 RMHTNMNLMAQMEKICRVSTPDLIIFVDEAVAGNDAVERAAQFNEAVP----------ID 363
Query: 568 GILLTKFD 575
G +LTK D
Sbjct: 364 GSILTKID 371
>sp|P27414|FTSY_SULAC Signal recognition particle receptor FtsY OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=ftsY PE=3 SV=1
Length = 369
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 156/274 (56%), Gaps = 18/274 (6%)
Query: 302 EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCE 361
+ G+ NK + K+ S F + K + + DL ++ L+ +L+ +V+ E+ EK+ E
Sbjct: 68 QTGQENKQENKR-----SFFDFLKYKT-IKEDDLNDVIEELRFQLLDSDVSYEVTEKILE 121
Query: 362 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421
+ +L GKK++ + IV +++++ ILT + D++ + ++ +KP+V++F
Sbjct: 122 DLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSG--KKPFVIIFF 179
Query: 422 GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481
GVNGVGK+T +AKV L ++ +S ++AA DTFR+ A EQL HA +L+V + Y D
Sbjct: 180 GVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRGKYGAD 239
Query: 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541
PA VA +AI A DVVL+DTAGRM + L+ L +++ + PD + + ++L G+
Sbjct: 240 PASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLRIAKPDFRILILDSLAGS 299
Query: 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
DA++Q F + D ++LTK D
Sbjct: 300 DALEQARHFENNVG----------YDAVILTKVD 323
>sp|D4GYW6|FTSY_HALVD Signal recognition particle receptor FtsY OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=ftsY PE=3 SV=1
Length = 456
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 21/279 (7%)
Query: 297 SEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIA 356
+EEDE+ D+ G GK +++ DLE L L+ L+ +V ++A
Sbjct: 151 TEEDED-------DSSGPGRLRRAAAFATGKVVIEEEDLEDPLWELEMALLQSDVEMQVA 203
Query: 357 EKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416
E++ E++ L G+ +V A+ +AL +++ + D + + E KP
Sbjct: 204 EEILETIREKLIGETRKQVESTGQLVSEALHDALYEVISVGQ-FDFDQRI---AEADKPV 259
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
++F G+NGVGK+T +AK+A + + S ++A DT+R+GA EQ+R HA L +
Sbjct: 260 TLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANGDTYRAGANEQIREHAEALDKKLIAH 319
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536
DPA V + ++ A + D+VL DTAGR+ + LM L K+ + PDL LFV E
Sbjct: 320 EQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHTSNDLMAQLEKIDRVVGPDLTLFVDE 379
Query: 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
A+ G DAV++ +FN A IDG +LTK D
Sbjct: 380 AVAGQDAVERARQFNDAAA----------IDGAILTKAD 408
>sp|Q9HJ93|FTSY_THEAC Signal recognition particle receptor FtsY OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=ftsY PE=3 SV=1
Length = 288
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 31/236 (13%)
Query: 351 VAEEIAEKLCESVAASLEGKKLASFTR----------ISSIVQAAMEEALVRILTPRRSI 400
VA+EI KL E+ + + LAS R + ++ +++ E + P
Sbjct: 23 VADEIPLKLVEADVSLEAAEDLASLVRNKLKEDTTLDPNEVLSSSILE-----MMPEYKF 77
Query: 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE 460
D+L +KP+VV+F+G+NG GK+T + K A++L ++ SV++AA DTFR+GA+E
Sbjct: 78 DVL------NVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSVVIAAADTFRAGAIE 131
Query: 461 QLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALS 520
Q+ R + DP+ VA +AI+ A D VL+DTAGRM N+ L+ +
Sbjct: 132 QISLIGREAGTEVIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTAGRMNTNKNLLDEMK 191
Query: 521 KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576
K+ ++ PDL L V +A+ G D+V+Q F + + DG+++TK DT
Sbjct: 192 KIKRVSKPDLTLLVIDAVSGQDSVNQARMFEENVG----------YDGVIVTKLDT 237
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 143/269 (53%), Gaps = 32/269 (11%)
Query: 320 MFQSIAGKANLDKADLEPALKALK--DRLMTKNVAEEIAEKLCESVAASLEGKKLASFTR 377
MF ++A + LE A K L+ D++ N+ E + E +AA + + + F
Sbjct: 1 MFDALADR-------LEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGF-- 51
Query: 378 ISSIVQAAMEEALVRILTP-RRSIDILRD----------VHAAKEQRKPYVVVFVGVNGV 426
I + Q A+ ++ + P ++ I I+ D V A+ ++ P V++ G+ G
Sbjct: 52 IKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGT 111
Query: 427 GKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486
GK+T AK+A +L + K S +M A D +R A++QL+T +++ VP+F+ G + +P +A
Sbjct: 112 GKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIA 171
Query: 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546
++ +++A G D VL+DTAGR+Q + +M L+++ + PD L V +A+ G +A +
Sbjct: 172 RQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANL 231
Query: 547 LSKFNQKLADLSSSPNPQLIDGILLTKFD 575
F++++ I G +LTK D
Sbjct: 232 THTFHEQIG----------ITGAILTKLD 250
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 134/263 (50%), Gaps = 18/263 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
T +F+++ GK L + D++ K ++ L+ +VA + ++ + V G ++
Sbjct: 7 TERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVI 66
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
S + + E L +L + K + P +++ VG+ G GK+T
Sbjct: 67 DTLDPSQQIIKIVNEELTAVLGSETA-------EIEKSSKIPTIIMMVGLQGAGKTTFAG 119
Query: 434 KVAYWLLQHK-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492
K+A L++ + +M A D +R A++QL+T +++ VP+F+ G E + + + +
Sbjct: 120 KLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQ 179
Query: 493 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552
A N +D VL+DTAGR+Q +E LM L + L NP+ +L V ++++G +A + +FNQ
Sbjct: 180 AKENRNDYVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQ 239
Query: 553 KLADLSSSPNPQLIDGILLTKFD 575
+L + G++LTK D
Sbjct: 240 QLE----------VTGVILTKID 252
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 34/252 (13%)
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQA----AM 386
D+ L+ AL LK L+ +V ++A +L KK+ S T+++ I + A+
Sbjct: 21 DEKALDRALDELKKTLLKNDVHHKVARELL---------KKVESQTKLNGIGKQQFLDAL 71
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
E++L+ IL+ + S Q P VV+ G+ G GK+T AK+A++L V
Sbjct: 72 EKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKV 125
Query: 447 MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI--VAKEAIQEATRNGSDVVLVD 504
++ ACD R AVEQL+ ++ V +F YE++ ++ +A A++ A DV+LVD
Sbjct: 126 LLCACDLQRLAAVEQLKVLGEQVGVEVF---YEENKSVKEIASNALKRAKEAQFDVLLVD 182
Query: 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564
+AGR+ ++ LM+ L ++ + NP VL+V +AL G D V + FN+++
Sbjct: 183 SAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIG--------- 233
Query: 565 LIDGILLTKFDT 576
+ G++L+KFD+
Sbjct: 234 -VSGVVLSKFDS 244
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 135/262 (51%), Gaps = 17/262 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
TG + + + G+ L K ++ ++ ++ L+ +V+ + + +SV+ G +
Sbjct: 82 TGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVI 141
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
+ + + + LV+++ S ++ AK P V++ G+ GVGK+T A
Sbjct: 142 RGVKPDQQLVKIVHDELVKLMGGEVS-----ELQFAKS--GPTVILLAGLQGVGKTTVCA 194
Query: 434 KVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493
K+A +L + S M+ A D +R A++QL ++ VP++ G + PA +AK+ ++EA
Sbjct: 195 KLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEA 254
Query: 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553
+N DVV++DTAGR+Q ++ +M L + NP VL V +A+ G +A ++ FN +
Sbjct: 255 KKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVE 314
Query: 554 LADLSSSPNPQLIDGILLTKFD 575
+ I G +LTK D
Sbjct: 315 IG----------ITGAILTKLD 326
>sp|O67066|FTSY_AQUAE Signal recognition particle receptor FtsY OS=Aquifex aeolicus
(strain VF5) GN=ftsY PE=3 SV=1
Length = 461
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 16/180 (8%)
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
V++FVGVNG GK+T + K+A+ L Q V++ A DTFR+ A+EQL A+R V I +K
Sbjct: 262 VLLFVGVNGSGKTTTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKK 321
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDL 530
DP V E +++A G +VVLVDTAGR+ EPL+ L K+ + P
Sbjct: 322 EEGSDPGAVVYEGMKKAKEEGYEVVLVDTAGRLHTKEPLINELRKIKKVIQKFDKEEPSE 381
Query: 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWSMCREL 590
L V +A G +A+ Q F + + I GI++TK D ++CREL
Sbjct: 382 TLLVIDATTGQNAIQQAKVFKEAVD----------ITGIVVTKLDGSAKGGAVVAICREL 431
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 128/266 (48%), Gaps = 18/266 (6%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S Q ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ I+Q A+ L +IL P + L+ + KP VV+FVG+ G GK+T
Sbjct: 64 DLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLK-------KGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-EKDPAIVAKEA 489
K AY + + DTFR+GA +QL+ +A + ++P + Y E DP +A +
Sbjct: 117 TCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDG 176
Query: 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549
++ + D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ
Sbjct: 177 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQA 236
Query: 550 FNQKLADLSSSPNPQLIDGILLTKFD 575
F Q +A + +++TK D
Sbjct: 237 FRQSVA----------VGAVIVTKMD 252
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 17/261 (6%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G S Q ++ +D+ L L + L+ +V ++ + ++ + LA+
Sbjct: 8 GSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I+Q A+ L +IL P + ++ KP +V+FVG+ G GK+T K
Sbjct: 68 GHNKRRIIQQAVFNELCKILDPGKP-------SFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A + ++
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFK 180
Query: 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ F Q +
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 555 ADLSSSPNPQLIDGILLTKFD 575
A + +++TK D
Sbjct: 241 A----------VGAVIVTKMD 251
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 17/261 (6%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G + Q ++ +D+ L L + L+ +V+ + +++ ++ + + LA+
Sbjct: 8 GRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I++ A+ L ++L P + A ++ K VV+FVG+ G GK+T K
Sbjct: 68 GHNKRRIIEQAIFSELCKMLDPGKP-------AFAPKKAKASVVMFVGLQGAGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFK 180
Query: 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ F Q +
Sbjct: 181 KENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 555 ADLSSSPNPQLIDGILLTKFD 575
A + +++TK D
Sbjct: 241 A----------VGAVIITKMD 251
>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
(strain K12) GN=ftsY PE=1 SV=1
Length = 497
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 16/171 (9%)
Query: 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
E + P+V++ VGVNGVGK+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 348
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 524
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 349 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 408
Query: 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
+ P V+ +A G +AV Q F++ + + GI LTK D
Sbjct: 409 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLD 449
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 130/250 (52%), Gaps = 17/250 (6%)
Query: 326 GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAA 385
G+ + +++++ ALK ++ L+ +V + ++ V G ++ S R
Sbjct: 18 GQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKV 77
Query: 386 MEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 445
+ + LV+++ V A+ + P V++ G+ G GK+T AK+A L + S
Sbjct: 78 VYDELVQVMGETH-------VPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRS 130
Query: 446 VMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505
++ A D +R A++QL T +++ VP+FE G + +P +A++ +++A + G D V+VDT
Sbjct: 131 TLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDT 190
Query: 506 AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565
AGR+Q + +M L+++ P VL V ++++G +A F++++
Sbjct: 191 AGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG---------- 240
Query: 566 IDGILLTKFD 575
I G +LTK D
Sbjct: 241 ITGAILTKLD 250
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 17/265 (6%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ T I+Q A+ L +L P + ++ KP VV+FVG+ G GK+T
Sbjct: 64 TLAAGTNKRRIIQQAVFTELCNMLDPGKP-------AFTPKKGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
K AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGL 176
Query: 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550
+ + SD++++DT+GR + L + ++ PDLV+FV + +G A DQ F
Sbjct: 177 ERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAF 236
Query: 551 NQKLADLSSSPNPQLIDGILLTKFD 575
Q S+S + +++TK D
Sbjct: 237 KQ-----SAS-----VGAVIITKLD 251
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 17/265 (6%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ T I+Q A+ L +L P + ++ KP VV+FVG+ G GK+T
Sbjct: 64 TLAAGTNKRRIIQQAVFTELCNMLDPGKP-------AFTTKKGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
K AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGL 176
Query: 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550
+ + SD++++DT+GR + L + ++ PDLV+FV + +G A DQ F
Sbjct: 177 ERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAF 236
Query: 551 NQKLADLSSSPNPQLIDGILLTKFD 575
Q S+S + +++TK D
Sbjct: 237 KQ-----SAS-----VGAVIITKLD 251
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 17/261 (6%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G + Q + +D+ L L + L+ +V+ + EK+ ++ + LA+
Sbjct: 8 GRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I++ A+ + L R+L P + A ++ KP VV+FVG+ G GK+T K
Sbjct: 68 GHNKRLIIEQAIFKELCRMLDPGKP-------AFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 121 YAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFK 180
Query: 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G A +Q F + +
Sbjct: 181 KEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETV 240
Query: 555 ADLSSSPNPQLIDGILLTKFD 575
+ + +++TK D
Sbjct: 241 S----------VGAVIITKMD 251
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 134/252 (53%), Gaps = 34/252 (13%)
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQA----AM 386
D+ L+ AL LK L+ +V ++A +L KK+ S T+ I + A+
Sbjct: 21 DEKALDRALDELKKTLLKNDVHHKVARELL---------KKVESQTKAGGIGKQQFLDAL 71
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
E++L+ IL+ + S Q P VV+ G+ G GK+T AK+A++L V
Sbjct: 72 EKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKV 125
Query: 447 MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI--VAKEAIQEATRNGSDVVLVD 504
++ ACD R AVEQL+ ++ V +F +E++ ++ +A A++ A DV++VD
Sbjct: 126 LLCACDLQRLAAVEQLKVLGEQVGVEVF---HEENKSVKEIANNALKRAKEAQFDVLIVD 182
Query: 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564
+AGR+ ++ LM+ L ++ + NP VL+V +AL G D V + FN+++
Sbjct: 183 SAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEIG--------- 233
Query: 565 LIDGILLTKFDT 576
+ G++L+KFD+
Sbjct: 234 -VSGVVLSKFDS 244
>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain
168) GN=ffh PE=1 SV=1
Length = 446
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 11/168 (6%)
Query: 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHAR 467
A +R P V++ VG+ G GK+T K+A L + H M+ A D +R A++QL T +
Sbjct: 95 AVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGK 154
Query: 468 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNN 527
+L +P+F G + P +AK+AI++A D V++DTAGR+ + LM L+ + + N
Sbjct: 155 QLDMPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN 214
Query: 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
P+ + V +++ G DAV+ FN++L + G++LTK D
Sbjct: 215 PEEIFLVVDSMTGQDAVNVAKSFNEQLG----------LTGVVLTKLD 252
>sp|P44870|FTSY_HAEIN Signal recognition particle receptor FtsY OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsY PE=3
SV=1
Length = 414
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 19/184 (10%)
Query: 401 DILRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457
DIL V E +KPYV++ VGVNGVGK+T + K+A SVM+AA DTFR+
Sbjct: 192 DILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAA 251
Query: 458 AVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMR 517
AVEQL+ R +P+ + D A V +A+Q A D+++ DTAGR+Q+ LM
Sbjct: 252 AVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMD 311
Query: 518 ALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571
L K++ + P ++ +A G +A+ Q FN+ + + GI L
Sbjct: 312 ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVG----------LTGISL 361
Query: 572 TKFD 575
TK D
Sbjct: 362 TKLD 365
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 19/252 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + + VG+ G GK+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFD 575
+ G++LTK D
Sbjct: 239 --VTGLVLTKLD 248
>sp|Q726P7|FTSY_DESVH Signal recognition particle receptor FtsY OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ftsY
PE=3 SV=1
Length = 488
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474
P VV+ +GVNGVGK+T +AK+AY V++AA DTFR+ A+EQL A+R+ +
Sbjct: 280 PEVVLLIGVNGVGKTTTIAKLAYRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFY 339
Query: 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKL------IYLNNP 528
K DPA VA EA+ +A G D++LVDTAGR+ LM L K+ + P
Sbjct: 340 AKTAGADPAAVAYEAMDKAVSEGYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAP 399
Query: 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
+ V +A G +A+ Q FN+ +D I+LTK D
Sbjct: 400 HRSILVIDATTGQNALSQTKLFNEACG----------VDEIVLTKLD 436
>sp|P51835|FTSY_BACSU Signal recognition particle receptor FtsY OS=Bacillus subtilis
(strain 168) GN=ftsY PE=1 SV=2
Length = 329
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
V++ VGVNGVGK+T + K+A+ + Q SV++AA DTFR+GA+EQL R VP+ ++
Sbjct: 122 VILLVGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQ 181
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDL 530
DPA V +A+ A +DV++ DTAGR+Q+ LM+ L K+ + P
Sbjct: 182 TAGSDPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHE 241
Query: 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
VL +A G +A+ Q +F S + N + GI LTK D
Sbjct: 242 VLLALDATTGQNAMAQAKEF-------SKATN---VTGIALTKLD 276
>sp|Q8CWX8|FTSY_STRMU Signal recognition particle receptor FtsY OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ftsY PE=3
SV=1
Length = 498
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 16/165 (9%)
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
V++FVGVNGVGK+T++ K+AY VM+ A DTFR+GAV QL RR+ VP+
Sbjct: 296 VMLFVGVNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTG 355
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKL------IYLNNPDL 530
DPA V + ++ A D++++DTAGR+Q+ + LM L K+ + + P
Sbjct: 356 PKNADPASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIPDAPHE 415
Query: 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
L +A G +A+ Q +F+ K+ L+ G++LTK D
Sbjct: 416 TLLTLDASTGQNALVQAKEFS-KITPLT---------GLILTKID 450
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 125/241 (51%), Gaps = 17/241 (7%)
Query: 335 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394
L+ LK + L+ +V ++ KL ++V A+++ + + + I+Q ++ L ++L
Sbjct: 27 LQAMLKEICTALLEADVNVKLVGKLRQNVRAAIDFEDMGAGLSKRRIIQTSVFNELCKLL 86
Query: 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454
P + H K V++FVG+ G GK+T K+AY + + DTF
Sbjct: 87 DPGVPV-----WHPTKGHSN--VIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTF 139
Query: 455 RSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEP 514
R+GA +QL+ +A + +VP + E DP ++A+E +++ + +V++VDT+GR + E
Sbjct: 140 RAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFKEDSFEVIIVDTSGRHKQEES 199
Query: 515 LMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574
L + ++ +PD ++FV + +G Q F +K+ D++S +++TK
Sbjct: 200 LFEEMLQVSQAIDPDNIIFVMDGTIGQACESQARAFKEKV-DVAS---------VIVTKL 249
Query: 575 D 575
D
Sbjct: 250 D 250
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare
GN=SRP54-3 PE=2 SV=1
Length = 493
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 126/253 (49%), Gaps = 17/253 (6%)
Query: 323 SIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIV 382
+++ A +D++ L L + LM +V + L ++ ++ + LA+ T I+
Sbjct: 15 AMSSAAVVDESVLRECLNEIARALMQSDVRFKTVCDLQANIRKTVNLEALAAGTNKRRII 74
Query: 383 QAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442
+ ++ + L ++L D + K+ KP VV+FVG+ G GK+T K A++ +
Sbjct: 75 ETSVGKELCKML------DTGKPAFVPKKG-KPNVVMFVGLQGSGKTTTCTKYAHYHQRK 127
Query: 443 KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVL 502
+ DTFR+GA +QL+ +A + ++P + E DP +A E +++ + SD+++
Sbjct: 128 GFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKFRQEKSDLII 187
Query: 503 VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562
+DT+GR L + ++ PDLV+FV + +G A DQ F Q +
Sbjct: 188 IDTSGRHMQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSAS------- 240
Query: 563 PQLIDGILLTKFD 575
+ +++TK D
Sbjct: 241 ---VGAVIVTKLD 250
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFD 575
D++S +++TK D
Sbjct: 241 DVAS---------VIVTKLD 251
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFD 575
D++S +++TK D
Sbjct: 241 DVAS---------VIVTKLD 251
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFD 575
D++S +++TK D
Sbjct: 241 DVAS---------VIVTKLD 251
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFD 575
D++S +++TK D
Sbjct: 241 DVAS---------VIVTKLD 251
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFD 575
D++S +++TK D
Sbjct: 241 DVAS---------VIVTKLD 251
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFD 575
D++S +++TK D
Sbjct: 241 DVAS---------VIVTKLD 251
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFD 575
D++S +++TK D
Sbjct: 241 DVAS---------VIVTKLD 251
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 132/260 (50%), Gaps = 20/260 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
++ + IA +++D+A ++ ++ ++ L+ +V + +L + +LE K A
Sbjct: 10 LANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGI 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + I+I + KP +++ VG+ G GK+T +AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTILLMVGIQGSGKTTTVAKL 120
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
A + + V + DT+R GA QLR R + +F EKD +AKE +
Sbjct: 121 ARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
G D+++VDTAGR ++++ L+ + ++ + +P V+ V + +G A +NQ LA
Sbjct: 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA------YNQALA 234
Query: 556 DLSSSPNPQLIDGILLTKFD 575
++P I I++TK D
Sbjct: 235 FKEATP----IGSIIVTKLD 250
>sp|A9CHH2|FTSY_AGRT5 Signal recognition particle receptor FtsY OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=ftsY PE=3 SV=1
Length = 478
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 143/300 (47%), Gaps = 40/300 (13%)
Query: 291 FSSDSESEEDEEVGKHNKPD---------AKKTGWFSSMFQSIAGKANLDKADLEPALKA 341
FSS E EE V K A+ + ++ ++ K LD E L
Sbjct: 158 FSSAREREEPVPVAPQVKLTWFQRLRAGLARTSSQLTTQISALFTKRKLD----EDTLDE 213
Query: 342 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSID 401
L+D L+ ++ E A ++ ++++ GK + S ++ I+ + + L + P +D
Sbjct: 214 LEDLLIQSDLGVETAMRITGALSSERYGKDV-SGEDVARIMAGEITKVLKPVAKPLE-LD 271
Query: 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 461
+ KP+V++ VGVNG GK+T + K+A L + VM+AA DTFR+ A+EQ
Sbjct: 272 L---------SHKPHVILVVGVNGTGKTTTIGKLAAKLSGSGLKVMLAAGDTFRAAAIEQ 322
Query: 462 LRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 521
L+ A R D A +A +A ++A SDV+++DTAGR+Q+ LM L K
Sbjct: 323 LKIWADRTGSEFIGTKLGADAAGLAYDAYEQARAQKSDVLIIDTAGRLQNKTELMAELEK 382
Query: 522 LIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
++ + + P VL +A G +A++Q+ F N + G+++TK D
Sbjct: 383 IVRVLGKLDPDAPHTVLQTLDATTGQNAMNQVEIFR----------NVAGVSGLIMTKLD 432
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 26/264 (9%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG----KKL 372
S ++I GK L + +++ L+ ++ L+ +VA + + V S G K L
Sbjct: 9 LSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALGEEVNKSL 68
Query: 373 ASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432
IVQ +E+A+ S+++ + P V++ G+ G GK+T++
Sbjct: 69 TPGQEFLKIVQRELEKAMGE---ANESLNL--------ATQPPAVILMAGLQGAGKTTSV 117
Query: 433 AKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491
K+A +L + HK V++ + D +R A++QL T A+ + V F +++P +AK A+
Sbjct: 118 GKLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALA 177
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
+A DV++VDTAGR+ + +M + ++ NP LF +A+ G DA + FN
Sbjct: 178 DAKLKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFN 237
Query: 552 QKLADLSSSPNPQLIDGILLTKFD 575
+ L + G++LTK D
Sbjct: 238 EALP----------LTGVILTKVD 251
>sp|Q9RS67|FTSY_DEIRA Signal recognition particle receptor FtsY OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=ftsY PE=3 SV=1
Length = 317
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 46/300 (15%)
Query: 316 WF-------SSMFQSIAGKANLDKADLEPA------LKALKDRLMTKNVAEEIAEKLCES 362
WF S Q I+G A +++ A ++ L+ L+ +V E++ E
Sbjct: 3 WFDRLRQGLSKTRQQISGTAGPLDQEVQTAFTRIDNIEDLEYALIAADVGRAATEEIIED 62
Query: 363 VAASLEGKKLASFTRISSIVQAAMEEALVRILTPR------RSIDILRDVHAAKEQRKPY 416
+ + EG+ +Q A+ AL L P R + DV +K K +
Sbjct: 63 IRKNGEGR-----------LQDALMRALTLQLEPNARRAQFRELGFSPDVSRSKVDPKGH 111
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
VV+ +GVNGVGK+T +AK+ + ++ SVM AA DTFR+ A QL RL VP+ +
Sbjct: 112 VVMVIGVNGVGKTTTIAKLGQYYMERGQSVMFAAGDTFRAAAGTQLGVWGERLGVPVIQG 171
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDL 530
DPA VA +A G+D++ VDTAGR+ + LM L K+ + P
Sbjct: 172 VDGGDPAAVAFDAAGARKARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAE 231
Query: 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWSMCREL 590
V V +A+ G + + Q KF++ ++P + G+++TK D + REL
Sbjct: 232 VWLVLDAVTGQNGLQQAKKFHE------ATP----LTGVVVTKLDGTAKGGILVPIVREL 281
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 131/250 (52%), Gaps = 22/250 (8%)
Query: 328 ANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAME 387
+ L++ +++ LK ++ L+ +V E A+++ +V G ++ + +
Sbjct: 22 STLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVH 81
Query: 388 EALVRILTPRRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
E LV IL + +DI +KP VV+ VG+ G GK+T K+AY L +
Sbjct: 82 EELVNILGKENAPLDI---------NKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKK 132
Query: 447 MMA-ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505
++ D +R GA+EQL ++ +FEKG ++DP A++A++ A N DVV++DT
Sbjct: 133 VLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG-KQDPVKTAEQALEYAKENNFDVVILDT 191
Query: 506 AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565
AGR+Q ++ LM+ L L +P+ +L V + + G + ++ ++FN KL
Sbjct: 192 AGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKLK---------- 241
Query: 566 IDGILLTKFD 575
+ G+++TK D
Sbjct: 242 LSGVVVTKLD 251
>sp|Q8KA77|FTSY_BUCAP Signal recognition particle receptor FtsY OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=ftsY PE=3 SV=1
Length = 351
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 27/256 (10%)
Query: 342 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSID 401
L+D ++ ++ +++ + K+L + ++ +++ M L R+ P +
Sbjct: 87 LEDTMLLSDIGVHTTDQIISKLINDATHKELKNPEKVYFLLKEHMYSILNRVEKPLKI-- 144
Query: 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 461
P+V++ VG+NG GK+T ++K+A SVM+AA DTFR+ +EQ
Sbjct: 145 ---------SNHTPFVILVVGINGTGKTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQ 195
Query: 462 LRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 521
L+ +R +P+ + DPA VA +A++ A DV+++DTAGR+ + L+ L K
Sbjct: 196 LQILGKRNNIPVISQSSGSDPASVAFDAVKSAISKKIDVLIIDTAGRLHNKLHLLEELKK 255
Query: 522 LIY------LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
++ L+ P ++ + +A G + + Q F++ + + G+++TK D
Sbjct: 256 MVRVIKKLNLSAPHEIMLIIDACNGQNTIKQTEMFHKAIN----------LTGLVITKLD 305
Query: 576 TIDDKHYQWSMCRELL 591
+S+ + L
Sbjct: 306 GTAKGGVIFSLANQFL 321
>sp|Q68VX4|FTSY_RICTY Signal recognition particle receptor FtsY OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=ftsY PE=3 SV=1
Length = 303
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471
+ K +++ GVNGVGK+T + K++ V +AACDTFR+ A+ QL + R
Sbjct: 98 ENKLNIILICGVNGVGKTTTIGKLSALYSAQGKKVAVAACDTFRAAAINQLSSWVDRANA 157
Query: 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------ 525
+ DPA VA AIQE+ + D++ +DTAGR+ +N+ LM LSK++ +
Sbjct: 158 LLITGEVSADPASVAYRAIQESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDE 217
Query: 526 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575
N P + + +A+ G + +Q+ FN D+++ + G+++TK D
Sbjct: 218 NAPTHSILIIDAVTGQNTYNQIEYFN----DVTN------LTGLIITKLD 257
>sp|P75362|FTSY_MYCPN Signal recognition particle receptor FtsY OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ftsY PE=3 SV=1
Length = 348
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 26/244 (10%)
Query: 340 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS 399
++L + L+ ++ A K+C+++ L+ ++++ I I+ +++ +V +
Sbjct: 69 ESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEII---VDKLIVYYIQ---- 121
Query: 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV 459
D L + E K V +FVGVNGVGK+T+LAK+A L + V+M A DTFR+GAV
Sbjct: 122 -DKLFETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAV 180
Query: 460 EQLRTHARRLQVPI-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRA 518
QL A+R+ I E+ PA++ + +Q+ +N D VL DT+GR+Q+ LM
Sbjct: 181 AQLAEWAQRIGCDIVLPNPKEETPAVIFR-GVQQGIQNEYDFVLCDTSGRLQNKTNLMNE 239
Query: 519 LSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572
L K+ + P L V + G + Q FN+ +L+ GI+LT
Sbjct: 240 LKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNE-FTELT---------GIILT 289
Query: 573 KFDT 576
K D+
Sbjct: 290 KMDS 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,933,530
Number of Sequences: 539616
Number of extensions: 9545709
Number of successful extensions: 36824
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 35830
Number of HSP's gapped (non-prelim): 993
length of query: 591
length of database: 191,569,459
effective HSP length: 123
effective length of query: 468
effective length of database: 125,196,691
effective search space: 58592051388
effective search space used: 58592051388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)